Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
CHD5	26038	broad.mit.edu	37	1	6172998	6172998	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr1:6172998C>A	uc001amb.1	-	34	5073	c.4973G>T	c.(4972-4974)AGC>ATC	p.S1658I	CHD5_uc001alz.1_Missense_Mutation_p.S515I|CHD5_uc001ama.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1658					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		GTCCCCTCTGCTGTGGATCAA	0.592000													32	65					1.45844e-13	1.99402e-13	1	0
PTCHD2	57540	broad.mit.edu	37	1	11562935	11562935	+	Silent	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr1:11562935C>T	uc001ash.3	+	3	1435	c.1297C>T	c.(1297-1299)CTG>TTG	p.L433L	PTCHD2_uc001asi.1_Silent_p.L433L	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	433	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		CGTGGCCATGCTGGCCAAGCA	0.522000													3	54					0	0	0	0
C1orf64	149563	broad.mit.edu	37	1	16332707	16332707	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr1:16332707C>T	uc001axn.2	+	2	444	c.376C>T	c.(376-378)CCG>TCG	p.P126S		NM_178840	NP_849162	Q8NEQ6	CA064_HUMAN	hypothetical protein LOC149563	126										breast(2)	2		Colorectal(325;0.000435)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;3.25e-07)|COAD - Colon adenocarcinoma(227;2.08e-05)|BRCA - Breast invasive adenocarcinoma(304;9.19e-05)|Kidney(64;0.000165)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.0114)|READ - Rectum adenocarcinoma(331;0.0649)		CCCAGTCAGCCCGCTCTGCCC	0.647000													20	35					0	0	0	0
MST1P2	11209	broad.mit.edu	37	1	16974935	16974935	+	RNA	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr1:16974935C>A	uc010och.1	+	7		c.1395C>A			MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						AGGGCCCTAACCCTGGGGCGG	0.657000													15	50					1.15088e-07	1.3586e-07	1	0
MST1P9	11223	broad.mit.edu	37	1	17085791	17085791	+	Missense_Mutation	SNP	G	A	A	rs2297532	by1000genomes	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr1:17085791G>A	uc010ock.1	-	8	1030	c.1030C>T	c.(1030-1032)CGT>TGT	p.R344C	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'UTR	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						TCTGTACAACGCCGGATCTGG	0.692000													4	21					0	0	0	0
EPHA8	2046	broad.mit.edu	37	1	22927549	22927549	+	Silent	SNP	T	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr1:22927549T>C	uc001bfx.1	+	15	2822	c.2697T>C	c.(2695-2697)CCT>CCC	p.P899P		NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	899	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		TCCGCAGCCCTGAGAGTCTCA	0.647000													3	87					0	0	0	0
NCDN	23154	broad.mit.edu	37	1	36028893	36028893	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr1:36028893G>C	uc001bza.2	+	6	1603	c.1476G>C	c.(1474-1476)AAG>AAC	p.K492N	NCDN_uc001bzb.2_Missense_Mutation_p.K492N|NCDN_uc001bzc.2_Missense_Mutation_p.K475N	NM_001014839	NP_001014839	Q9UBB6	NCDN_HUMAN	neurochondrin isoform 1	492					neuron projection development	cytosol|dendrite|neuronal cell body				large_intestine(2)|pancreas(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TTCTGTGCAAGTATTTCCTGC	0.622000													31	81					0	0	0	0
KIAA0754	643314	broad.mit.edu	37	1	39879476	39879476	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr1:39879476C>G	uc009vvt.1	+	1	4301	c.3539C>G	c.(3538-3540)GCA>GGA	p.A1180G	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc010oiu.1_Intron	NM_015038	NP_055853	O94854	K0754_HUMAN	hypothetical protein LOC643314	1044	Ala-rich.										0	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CCCACCCCAGCAGAATCTGCC	0.662000													16	38					0	0	0	0
C8A	731	broad.mit.edu	37	1	57341807	57341807	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr1:57341807G>A	uc001cyo.2	+	4	521	c.389G>A	c.(388-390)TGT>TAT	p.C130Y		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	130	LDL-receptor class A.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						GAGGACGACTGTGAAGATGTC	0.542000													16	38					0	0	0	0
ST6GALNAC3	256435	broad.mit.edu	37	1	76779616	76779616	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr1:76779616C>A	uc001dhh.2	+	2	308	c.145C>A	c.(145-147)CCA>ACA	p.P49T	ST6GALNAC3_uc001dhg.3_Missense_Mutation_p.P49T|ST6GALNAC3_uc010orh.1_Intron	NM_152996	NP_694541	Q8NDV1	SIA7C_HUMAN	sialyltransferase 7C isoform 1	49	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			ovary(3)|skin(2)	5						AAAGTGGATACCATTCTCCTA	0.453000													32	62					2.08457e-15	2.95009e-15	1	0
SYDE2	84144	broad.mit.edu	37	1	85647842	85647842	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr1:85647842C>T	uc009wcm.2	-	3	2532	c.2483G>A	c.(2482-2484)GGA>GAA	p.G828E	SYDE2_uc001dku.3_Missense_Mutation_p.G828E	NM_032184	NP_115560	Q5VT97	SYDE2_HUMAN	synapse defective 1, Rho GTPase, homolog 2	828	Rho-GAP.				activation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	Rho GTPase activator activity			ovary(1)|central_nervous_system(1)	2				all cancers(265;0.0126)|Epithelial(280;0.0336)		CACCATCAGTCCTATATTTTC	0.348000													3	16					0	0	0	0
COL11A1	1301	broad.mit.edu	37	1	103354187	103354187	+	Splice_Site	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr1:103354187C>A	uc001dul.2	-	62	4873	c.4555_splice	c.e62-1	p.G1519_splice	COL11A1_uc001duk.2_Splice_Site_p.G715_splice|COL11A1_uc001dum.2_Splice_Site_p.G1531_splice|COL11A1_uc001dun.2_Splice_Site_p.G1480_splice|COL11A1_uc009weh.2_Splice_Site_p.G1403_splice	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A						collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		CAGCGGGTCCCTGTTAGAAAG	0.423000													14	41					1.3612e-06	1.55383e-06	1	0
COL11A1	1301	broad.mit.edu	37	1	103471395	103471395	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr1:103471395C>A	uc001dul.2	-	18	2162	c.1844G>T	c.(1843-1845)AGG>ATG	p.R615M	COL11A1_uc001duk.2_Translation_Start_Site|COL11A1_uc001dum.2_Missense_Mutation_p.R627M|COL11A1_uc001dun.2_Missense_Mutation_p.R576M|COL11A1_uc009weh.2_Missense_Mutation_p.R499M	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	615	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		GTATCTTACCCTGTGACCTTT	0.289000													26	64					2.12542e-12	2.84172e-12	1	0
KCNT2	343450	broad.mit.edu	37	1	196295982	196295982	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr1:196295982T>C	uc001gtd.1	-	19	2201	c.2141A>G	c.(2140-2142)TAT>TGT	p.Y714C	KCNT2_uc009wyt.1_Intron|KCNT2_uc001gte.1_Missense_Mutation_p.Y664C|KCNT2_uc001gtf.1_Missense_Mutation_p.Y714C|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.Y714C|KCNT2_uc001gth.1_Missense_Mutation_p.Y235C	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	714	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						TTTGAATCCATAGGCTTTTGC	0.318000													22	55					0	0	0	0
TGFB2	7042	broad.mit.edu	37	1	218614596	218614596	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr1:218614596C>A	uc001hlm.2	+	7	1790	c.1137C>A	c.(1135-1137)TGC>TGA	p.C379*	TGFB2_uc001hln.2_Nonsense_Mutation_p.C407*|TGFB2_uc010pue.1_RNA|TGFB2_uc001hlo.2_RNA	NM_003238	NP_003229	P61812	TGFB2_HUMAN	transforming growth factor, beta 2 isoform 2	379					activation of protein kinase activity|angiogenesis|cardiac epithelial to mesenchymal transition|cardiac muscle cell proliferation|cardioblast differentiation|catagen|cell cycle arrest|cell death|cell growth|cell-cell junction organization|cell-cell signaling|collagen fibril organization|dopamine biosynthetic process|embryonic digestive tract development|eye development|glial cell migration|hair follicle morphogenesis|hemopoiesis|menstrual cycle phase|negative regulation of alkaline phosphatase activity|negative regulation of cell growth|negative regulation of epithelial cell proliferation|negative regulation of immune response|negative regulation of macrophage cytokine production|neuron development|neutrophil chemotaxis|odontogenesis|pathway-restricted SMAD protein phosphorylation|platelet activation|platelet degranulation|positive regulation of cardioblast differentiation|positive regulation of catagen|positive regulation of cell adhesion mediated by integrin|positive regulation of cell cycle|positive regulation of cell division|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of epithelial cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of heart contraction|positive regulation of immune response|positive regulation of integrin biosynthetic process|positive regulation of neuron apoptosis|positive regulation of ossification|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein secretion|positive regulation of stress-activated MAPK cascade|regulation of transforming growth factor-beta2 production|response to hypoxia|response to progesterone stimulus|salivary gland morphogenesis|SMAD protein import into nucleus|somatic stem cell division|transforming growth factor beta receptor signaling pathway	axon|extracellular matrix|extracellular space|neuronal cell body|platelet alpha granule lumen	beta-amyloid binding|cytokine activity|growth factor activity|protein heterodimerization activity|protein homodimerization activity|receptor signaling protein serine/threonine kinase activity|type II transforming growth factor beta receptor binding				0				all cancers(67;0.0459)|OV - Ovarian serous cystadenocarcinoma(81;0.049)|GBM - Glioblastoma multiforme(131;0.0776)		CTTCTCCTTGCTGCGTGTCCC	0.403000													28	59					4.87955e-14	6.70939e-14	1	0
RYR2	6262	broad.mit.edu	37	1	237838057	237838057	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr1:237838057C>A	uc001hyl.1	+	60	8861	c.8741C>A	c.(8740-8742)ACG>AAG	p.T2914K	RYR2_uc010pxz.1_5'UTR	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2914	Modulator (Potential).|Cytoplasmic (By similarity).|4 X approximate repeats.|4.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GAACTGGACACGCCTTCTATT	0.408000													5	16					0.00116845	0.00123478	1	0
LOC100130331	100130331	broad.mit.edu	37	1	238090369	238090369	+	RNA	SNP	C	G	G	rs41308192	by1000genomes	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr1:238090369C>G	uc010pyc.1	+	12		c.1875C>G				NR_027247				Homo sapiens mRNA; cDNA DKFZp434B2115 (from clone DKFZp434B2115).												0						CCAACTGGGACGACATGGAGA	0.607000													13	38					0	0	0	0
C10orf47	254427	broad.mit.edu	37	10	11911812	11911812	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr10:11911812G>T	uc001ikx.2	+	4	869	c.715G>T	c.(715-717)GGC>TGC	p.G239C	uc001iky.1_Intron	NM_153256	NP_694988	Q86WR7	CJ047_HUMAN	hypothetical protein LOC254427	239	Pro-rich.									central_nervous_system(1)	1						TGGAGACCCTGGCCCGGGGCC	0.766000													9	14					3.09899e-07	3.60555e-07	1	0
HSPA14	51182	broad.mit.edu	37	10	14894529	14894529	+	Nonsense_Mutation	SNP	A	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr10:14894529A>T	uc001inf.2	+	8	874	c.733A>T	c.(733-735)AGA>TGA	p.R245*		NM_016299	NP_057383	Q0VDF9	HSP7E_HUMAN	heat shock 70kDa protein 14 isoform 1	245					'de novo' cotranslational protein folding	cytosol	ATP binding|protein binding			ovary(2)|breast(2)|lung(1)	5						TGAGTTCCAAAGGTGAGTGTT	0.358000													30	61					0	0	0	0
SLC39A12	221074	broad.mit.edu	37	10	18331685	18331685	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr10:18331685C>A	uc001ipo.2	+	13	2272	c.1999C>A	c.(1999-2001)CTG>ATG	p.L667M	SLC39A12_uc001ipn.2_Missense_Mutation_p.L630M|SLC39A12_uc001ipp.2_Missense_Mutation_p.L666M|SLC39A12_uc010qck.1_Missense_Mutation_p.L533M	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	667	Helical; (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						GATGTTTCTCCTGCAAAACTT	0.353000													16	61					6.94344e-10	8.70629e-10	1	0
RASGEF1A	221002	broad.mit.edu	37	10	43691705	43691705	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr10:43691705A>T	uc001jap.1	-	13	1514	c.1433T>A	c.(1432-1434)CTG>CAG	p.L478Q	RASGEF1A_uc001jao.1_Missense_Mutation_p.L486Q	NM_145313	NP_660356	Q8N9B8	RGF1A_HUMAN	RasGEF domain family, member 1A	478					cell migration|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	Ras guanyl-nucleotide exchange factor activity				0						GGCTCTGTTCAGAAGGGTGGT	0.597000													27	66					0	0	0	0
RHOBTB1	9886	broad.mit.edu	37	10	62648784	62648784	+	Silent	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr10:62648784C>T	uc001jli.2	-	7	1080	c.642G>A	c.(640-642)CTG>CTA	p.L214L	RHOBTB1_uc001jlh.2_Silent_p.L214L|RHOBTB1_uc001jlj.2_Silent_p.L214L|RHOBTB1_uc001jlk.2_Silent_p.L214L|RHOBTB1_uc009xpe.1_Silent_p.L152L|RHOBTB1_uc001jll.2_5'UTR	NM_014836	NP_055651	O94844	RHBT1_HUMAN	Rho-related BTB domain containing 1	214					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			upper_aerodigestive_tract(1)	1	Prostate(12;0.0112)					TCCAGAATTGCAGGTGCCTGC	0.473000													64	229					0	0	0	0
SFTPA2	729238	broad.mit.edu	37	10	81319105	81319105	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr10:81319105G>T	uc001kal.3	-	3	232	c.135C>A	c.(133-135)GAC>GAA	p.D45E	SFTPA2_uc001kan.3_Missense_Mutation_p.D45E|SFTPA2_uc001kam.2_RNA	NM_006926	NP_008857	Q8IWL1	SFPA2_HUMAN	RecName: Full=Pulmonary surfactant-associated protein A2;          Short=SP-A2;          Short=SP-A;          Short=PSP-A;          Short=PSPA; AltName: Full=Alveolar proteinosis protein; AltName: Full=35 kDa pulmonary surfactant-associated protein; Flags: Precursor;	45	Collagen-like.				cell junction assembly|respiratory gaseous exchange	collagen|extracellular space	sugar binding				0	all_cancers(46;0.197)|Breast(12;0.000326)|Prostate(51;0.00985)|all_epithelial(25;0.0149)		Epithelial(14;0.00957)|all cancers(16;0.0179)|Colorectal(32;0.229)			CATCTCTCCCGTCCCTGCCTG	0.622000									Pulmonary_Fibrosis_Idiopathic				28	142					2.68265e-12	3.56704e-12	1	0
PNLIPRP1	5407	broad.mit.edu	37	10	118357567	118357567	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr10:118357567A>G	uc001lco.1	+	8	721	c.703A>G	c.(703-705)ACG>GCG	p.T235A	PNLIPRP1_uc001lcp.2_Missense_Mutation_p.T235A	NM_006229	NP_006220	P54315	LIPR1_HUMAN	pancreatic lipase-related protein 1 precursor	235					lipid metabolic process		calcium ion binding|triglyceride lipase activity			ovary(1)|breast(1)	2				all cancers(201;0.0161)		AGGTTTTGGAACGAACCAACA	0.463000													23	15					0	0	0	0
TUBGCP2	10844	broad.mit.edu	37	10	135099030	135099030	+	Missense_Mutation	SNP	C	T	T	rs142228780	byFrequency	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr10:135099030C>T	uc001lmg.1	-	12	2182	c.1825G>A	c.(1825-1827)GCG>ACG	p.A609T	TUBGCP2_uc001lmf.1_Missense_Mutation_p.A202T|TUBGCP2_uc010qvc.1_Missense_Mutation_p.A637T|TUBGCP2_uc009ybk.1_Intron|TUBGCP2_uc010qvd.1_Missense_Mutation_p.A479T|TUBGCP2_uc001lmh.1_RNA	NM_006659	NP_006650	Q9BSJ2	GCP2_HUMAN	tubulin, gamma complex associated protein 2	609					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytoplasmic microtubule|cytosol|spindle pole	protein binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.87e-06)|all cancers(32;8.98e-06)|Epithelial(32;1.15e-05)		CCGCTCAGCGCCAGCTCCGTG	0.642000													20	19					0	0	0	0
OR56B1	387748	broad.mit.edu	37	11	5758676	5758676	+	Silent	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr11:5758676C>T	uc001mbt.1	+	1	930	c.930C>T	c.(928-930)GCC>GCT	p.A310A	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005180	NP_001005180	Q8NGI3	O56B1_HUMAN	olfactory receptor, family 56, subfamily B,	310	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.086)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.184)		TTAGGGCAGCCTTCCAAAAGG	0.418000													44	107					0	0	0	0
OR56A1	120796	broad.mit.edu	37	11	6048915	6048915	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr11:6048915G>T	uc010qzw.1	-	1	20	c.20C>A	c.(19-21)TCA>TAA	p.S7*		NM_001001917	NP_001001917	Q8NGH5	O56A1_HUMAN	olfactory receptor, family 56, subfamily A,	7	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GTTGCTGGGTGACGCCATAGG	0.488000													38	101					1.47197e-15	2.09539e-15	1	0
SLC5A12	159963	broad.mit.edu	37	11	26725200	26725200	+	Silent	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr11:26725200G>A	uc001mra.2	-	6	1012	c.699C>T	c.(697-699)CTC>CTT	p.L233L	SLC5A12_uc001mrb.2_RNA|SLC5A12_uc001mrc.3_Silent_p.L233L	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	233	Extracellular (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						TGTGTCGCCTGAGAGGATCTA	0.403000													29	49					0	0	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136945	40136945	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr11:40136945G>C	uc001mxa.1	-	2	2862	c.898C>G	c.(898-900)CAC>GAC	p.H300D	LRRC4C_uc001mxc.1_Missense_Mutation_p.H296D|LRRC4C_uc001mxd.1_Missense_Mutation_p.H296D|LRRC4C_uc001mxb.1_Missense_Mutation_p.H296D	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	300					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				CAAGGGTTGTGATGTAAATGT	0.478000													32	62					0	0	0	0
PRDM11	56981	broad.mit.edu	37	11	45241231	45241231	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr11:45241231G>A	uc001myo.2	+	7	1016	c.767G>A	c.(766-768)CGG>CAG	p.R256Q		NM_020229	NP_064614	Q9NQV5	PRD11_HUMAN	PR domain containing 11	256	SET.									upper_aerodigestive_tract(1)	1						GAGTGGCTGCGGGTCTGGTAC	0.622000													11	29					0	0	0	0
OR4A15	81328	broad.mit.edu	37	11	55136211	55136211	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr11:55136211C>A	uc010rif.1	+	1	852	c.852C>A	c.(850-852)TTC>TTA	p.F284L		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	284	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CCTGTATCTTCTTGTATGCAA	0.408000													51	214					5.39261e-20	8.05563e-20	1	0
POLA2	23649	broad.mit.edu	37	11	65048604	65048604	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr11:65048604C>G	uc001odj.2	+	8	1228	c.886C>G	c.(886-888)CTG>GTG	p.L296V	POLA2_uc010rod.1_Missense_Mutation_p.L88V|POLA2_uc001odk.2_5'UTR	NM_002689	NP_002680	Q14181	DPOA2_HUMAN	DNA-directed DNA polymerase alpha 2	296					DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	nucleoplasm	DNA binding				0					Dacarbazine(DB00851)	GGAATATTCTCTGTTTCCTGG	0.517000													36	122					0	0	0	0
ADRBK1	156	broad.mit.edu	37	11	67051732	67051732	+	Silent	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr11:67051732G>A	uc009yrn.1	+	18	1808	c.1542G>A	c.(1540-1542)TCG>TCA	p.S514S	ADRBK1_uc009yrm.1_Intron	NM_001619	NP_001610	P25098	ARBK1_HUMAN	beta-adrenergic receptor kinase 1	514	AGC-kinase C-terminal.				activation of phospholipase C activity|cardiac muscle contraction|desensitization of G-protein coupled receptor protein signaling pathway|muscarinic acetylcholine receptor signaling pathway|negative regulation of striated muscle contraction|negative regulation of the force of heart contraction by chemical signal|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|positive regulation of catecholamine secretion|tachykinin receptor signaling pathway	cytosol|soluble fraction	alpha-2A adrenergic receptor binding|ATP binding|beta-adrenergic receptor kinase activity|Edg-2 lysophosphatidic acid receptor binding|G-protein coupled receptor kinase activity|signal transducer activity			large_intestine(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)		Adenosine triphosphate(DB00171)	TCACCATCTCGGAGCGGTGGC	0.592000													49	78					0	0	0	0
NCAM1	4684	broad.mit.edu	37	11	113076802	113076802	+	Silent	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr11:113076802C>A	uc009yyq.1	+	5	868	c.174C>A	c.(172-174)ATC>ATA	p.I58I	NCAM1_uc001pno.2_Silent_p.I58I	NM_001076682	NP_001070150	P13591	NCAM1_HUMAN	neural cell adhesion molecule 1 isoform 3	176	Ig-like C2-type 2.|Extracellular (Potential).				axon guidance|interferon-gamma-mediated signaling pathway	anchored to membrane|extracellular region|Golgi membrane|integral to membrane				ovary(1)	1		all_cancers(61;5.82e-19)|all_epithelial(67;6.87e-12)|Melanoma(852;1.99e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;0.00119)|Breast(348;0.0109)|all_neural(223;0.0299)|Medulloblastoma(222;0.0458)|Renal(330;0.198)|Prostate(24;0.207)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.000114)|all cancers(92;0.000467)|OV - Ovarian serous cystadenocarcinoma(223;0.212)		ACCTGCAGATCCGGGGCATCA	0.507000													25	153					5.35356e-11	6.96538e-11	1	0
ZW10	9183	broad.mit.edu	37	11	113639651	113639651	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr11:113639651T>A	uc001poe.2	-	2	181	c.144A>T	c.(142-144)GAA>GAT	p.E48D	ZW10_uc009yyv.2_RNA	NM_004724	NP_004715	O43264	ZW10_HUMAN	centromere/kinetochore protein zw10	48	Interaction with RINT1.|Interaction with ZWINT.|Potential.				cell division|ER to Golgi vesicle-mediated transport|establishment of mitotic spindle orientation|meiosis|mitotic cell cycle checkpoint|mitotic metaphase plate congression|mitotic prometaphase|protein complex assembly|protein localization to kinetochore|protein transport|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|endoplasmic reticulum membrane|kinetochore microtubule|nucleus|spindle pole	centromeric DNA binding|protein binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.84e-16)|all_epithelial(67;1e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000237)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0421)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.94e-06)|Epithelial(105;0.000103)|all cancers(92;0.000786)		TAGGCAGGAATTCACTGTACT	0.403000													62	66					0	0	0	0
CEP164	22897	broad.mit.edu	37	11	117282544	117282544	+	Silent	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr11:117282544G>A	uc001prc.2	+	32	4344	c.4197G>A	c.(4195-4197)TCG>TCA	p.S1399S	CEP164_uc001prb.2_Silent_p.S1394S|CEP164_uc001prf.2_RNA|CEP164_uc009yzp.1_RNA	NM_014956	NP_055771	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	1399					cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		ACTCCCATTCGCAAGTCCCTG	0.582000													5	120					0	0	0	0
NTM	50863	broad.mit.edu	37	11	132016264	132016264	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr11:132016264C>T	uc001qgp.2	+	2	920	c.256C>T	c.(256-258)CCT>TCT	p.P86S	NTM_uc001qgm.2_Missense_Mutation_p.P86S|NTM_uc010sch.1_Missense_Mutation_p.P77S|NTM_uc010sci.1_Missense_Mutation_p.P86S|NTM_uc010scj.1_Missense_Mutation_p.P45S|NTM_uc001qgo.2_Missense_Mutation_p.P86S|NTM_uc001qgq.2_Missense_Mutation_p.P86S	NM_016522	NP_057606	Q9P121	NTRI_HUMAN	neurotrimin isoform 1	86	Ig-like C2-type 1.				cell adhesion|neuron recognition	anchored to membrane|plasma membrane				ovary(4)|central_nervous_system(1)|skin(1)	6						GTGCCTGGATCCTCGCGTGGT	0.572000													21	71					0	0	0	0
DYRK4	8798	broad.mit.edu	37	12	4721873	4721873	+	Missense_Mutation	SNP	C	G	G	rs141423818	by1000genomes	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr12:4721873C>G	uc001qmx.2	+	12	1470	c.1310C>G	c.(1309-1311)TCG>TGG	p.S437W	DYRK4_uc009zeh.1_Missense_Mutation_p.S552W|DYRK4_uc001qmy.1_Missense_Mutation_p.S437W|DYRK4_uc001qmz.1_Missense_Mutation_p.S151W|DYRK4_uc001qna.1_Missense_Mutation_p.S74W|DYRK4_uc010ser.1_Missense_Mutation_p.S74W	NM_003845	NP_003836	Q9NR20	DYRK4_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	437						Golgi apparatus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|skin(1)	3			Colorectal(7;0.103)			TGTCATCACTCGAGCAGAAAA	0.468000													42	49					0	0	0	0
TPI1	7167	broad.mit.edu	37	12	6976735	6976735	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr12:6976735C>T	uc001qrk.2	+	1	43	c.5C>T	c.(4-6)GCG>GTG	p.A2V	TPI1_uc010sfo.1_5'Flank	NM_000365	NP_000356	P60174	TPIS_HUMAN	triosephosphate isomerase 1 isoform 1	2					fatty acid biosynthetic process|gluconeogenesis|glycolysis|pentose-phosphate shunt	cytosol	triose-phosphate isomerase activity				0						AGCGCCATGGCGCCCTCCAGG	0.597000													8	18					0	0	0	0
PRB1	5542	broad.mit.edu	37	12	11506584	11506584	+	Silent	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr12:11506584G>T	uc001qzw.1	-	3	490	c.453C>A	c.(451-453)CCC>CCA	p.P151P	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	212	15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].|8.		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			GAGGAGATCAGGGACTTCGGG	0.612000													142	552					6.51847e-42	1.01772e-41	1	0
ARID2	196528	broad.mit.edu	37	12	46215209	46215209	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr12:46215209G>T	uc001ros.1	+	6	644	c.644G>T	c.(643-645)GGA>GTA	p.G215V	ARID2_uc001ror.2_Missense_Mutation_p.G215V	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	215					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		TTAGCTTTAGGATCCTTTTCC	0.254000													13	56					9.05144e-12	1.19046e-11	1	0
SDR9C7	121214	broad.mit.edu	37	12	57323300	57323300	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr12:57323300T>C	uc010sqw.1	-	3	598	c.598A>G	c.(598-600)ATT>GTT	p.I200V		NM_148897	NP_683695	Q8NEX9	DR9C7_HUMAN	short chain dehydrogenase/reductase family 9C,	200						cytoplasm	binding|oxidoreductase activity			central_nervous_system(1)	1						CCTGGCTCAATGATGCAGACT	0.552000													31	33					0	0	0	0
LRP1	4035	broad.mit.edu	37	12	57550688	57550688	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr12:57550688G>A	uc001snd.2	+	10	2012	c.1546G>A	c.(1546-1548)GGG>AGG	p.G516R		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	516	EGF-like 3.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GGGCAGTGACGGGAAGTCATG	0.657000													3	10					0	0	0	0
RBM19	9904	broad.mit.edu	37	12	114261056	114261056	+	Silent	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr12:114261056G>A	uc009zwi.2	-	24	3000	c.2856C>T	c.(2854-2856)GAC>GAT	p.D952D	RBM19_uc001tvn.3_Silent_p.D952D|RBM19_uc001tvm.2_Silent_p.D952D	NM_001146699	NP_001140171	Q9Y4C8	RBM19_HUMAN	RNA binding motif protein 19	952					multicellular organismal development|positive regulation of embryonic development	chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|RNA binding			skin(3)|ovary(1)|liver(1)|central_nervous_system(1)	6	Medulloblastoma(191;0.163)|all_neural(191;0.178)					GCTCCTCGCTGTCGCTGTCAC	0.637000													16	32					0	0	0	0
GPR109B	8843	broad.mit.edu	37	12	123200755	123200755	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr12:123200755C>T	uc001ucy.3	-	1	685	c.530G>A	c.(529-531)TGC>TAC	p.C177Y	GPR81_uc001ucw.1_Intron	NM_006018	NP_006009	P49019	HCAR3_HUMAN	G protein-coupled receptor 109B	177	Extracellular (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	GAAGCTGATGCACACATTTGC	0.537000													29	53					0	0	0	0
DCLK1	9201	broad.mit.edu	37	13	36700222	36700222	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr13:36700222G>A	uc001uvf.2	-	2	286	c.53C>T	c.(52-54)GCG>GTG	p.A18V		NM_004734	NP_004725	O15075	DCLK1_HUMAN	doublecortin-like kinase 1	18					cell differentiation|central nervous system development|endosome transport|intracellular signal transduction|response to virus	integral to plasma membrane	ATP binding|protein serine/threonine kinase activity|receptor signaling protein activity			stomach(6)|ovary(2)|skin(1)	9		Breast(139;0.0147)|Lung SC(185;0.0685)|Prostate(109;0.122)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.72e-06)|Epithelial(112;4.24e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00159)|OV - Ovarian serous cystadenocarcinoma(117;0.0158)|GBM - Glioblastoma multiforme(144;0.0638)		GTATCTCTGCGCCTTATCCCG	0.622000													25	41					0	0	0	0
SPERT	220082	broad.mit.edu	37	13	46288501	46288501	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr13:46288501G>T	uc001van.1	+	3	1421	c.1341G>T	c.(1339-1341)AGG>AGT	p.R447S	SPERT_uc001vao.2_Missense_Mutation_p.R411S	NM_152719	NP_689932	Q8NA61	SPERT_HUMAN	spermatid associated	447						cytoplasmic membrane-bounded vesicle				central_nervous_system(1)|pancreas(1)	2		Breast(56;0.000819)|Lung NSC(96;0.00227)|Prostate(109;0.00703)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.26e-05)		AGCCTAGCAGGGTCTGAGGCC	0.622000													6	7					3.59834e-05	3.95817e-05	1	0
SLITRK5	26050	broad.mit.edu	37	13	88328994	88328994	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr13:88328994C>A	uc001vln.2	+	2	1570	c.1351C>A	c.(1351-1353)CGC>AGC	p.R451S	SLITRK5_uc010tic.1_Missense_Mutation_p.R210S	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	451	Extracellular (Potential).|LRR 8.					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					GATCCAGGACCGCGCTTTCGG	0.597000													35	21					9.65963e-10	1.20496e-09	1	0
GPC5	2262	broad.mit.edu	37	13	92345880	92345880	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr13:92345880G>C	uc010tif.1	+	3	1131	c.765G>C	c.(763-765)ATG>ATC	p.M255I		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	255						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				TCCTGAAGATGCAATACTGCC	0.552000													30	25					0	0	0	0
GPC5	2262	broad.mit.edu	37	13	93518663	93518663	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr13:93518663G>C	uc010tif.1	+	8	2056	c.1690G>C	c.(1690-1692)GTG>CTG	p.V564L		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	564						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				TCTGATAAGTGTGGTGATGTT	0.433000													55	31					0	0	0	0
FAM155A	728215	broad.mit.edu	37	13	107822853	107822853	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr13:107822853C>A	uc001vql.2	-	3	1885	c.1369G>T	c.(1369-1371)GAG>TAG	p.E457*		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	457						integral to membrane	binding			skin(1)	1						CGTTACTCCTCATTGGTTGAG	0.522000													31	19					2.61193e-14	3.63269e-14	1	0
NPAS3	64067	broad.mit.edu	37	14	34243588	34243588	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr14:34243588C>A	uc001wru.2	+	8	962	c.898C>A	c.(898-900)CAC>AAC	p.H300N	NPAS3_uc001wrs.2_Missense_Mutation_p.H287N|NPAS3_uc001wrt.2_Missense_Mutation_p.H268N|NPAS3_uc001wrv.2_Missense_Mutation_p.H270N	NM_173159	NP_071406	Q8IXF0	NPAS3_HUMAN	neuronal PAS domain protein 3 isoform 3	300					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)|skin(1)	2	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		GTCGCTGTCCCACGGGAGGAC	0.498000													22	73					1.50039e-11	1.96267e-11	1	0
FSCB	84075	broad.mit.edu	37	14	44974135	44974135	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr14:44974135G>A	uc001wvn.2	-	1	2365	c.2056C>T	c.(2056-2058)CCA>TCA	p.P686S		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	686						cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		TCCTCAGCTGGTAGAGACTGA	0.597000													14	16					0	0	0	0
TRIM9	114088	broad.mit.edu	37	14	51464789	51464789	+	Silent	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr14:51464789G>A	uc001wyx.3	-	7	2347	c.1582C>T	c.(1582-1584)CTG>TTG	p.L528L	TRIM9_uc001wyy.2_Silent_p.L524L|TRIM9_uc001wyz.3_Silent_p.L528L	NM_015163	NP_055978	Q9C026	TRIM9_HUMAN	tripartite motif protein 9 isoform 1	528	Fibronectin type-III.				proteasomal ubiquitin-dependent protein catabolic process	cell junction|cytoskeleton|dendrite|synaptic vesicle	protein homodimerization activity|ubiquitin-protein ligase activity|zinc ion binding			skin(2)|lung(1)	3	all_epithelial(31;0.00418)|Breast(41;0.148)					TGGAGGACCAGGGTCTTGCTG	0.552000													13	42					0	0	0	0
HIF1A	3091	broad.mit.edu	37	14	62204929	62204929	+	Silent	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr14:62204929G>A	uc001xfq.2	+	10	1778	c.1374G>A	c.(1372-1374)ACG>ACA	p.T458T	HIF1A_uc001xfr.2_Silent_p.T458T|HIF1A_uc001xfs.2_Silent_p.T459T	NM_001530	NP_001521	Q16665	HIF1A_HUMAN	hypoxia-inducible factor 1, alpha subunit	458	ODD.				cellular response to hypoxia|collagen metabolic process|connective tissue replacement involved in inflammatory response wound healing|elastin metabolic process|epithelial to mesenchymal transition|oxygen homeostasis|positive regulation of chemokine production|positive regulation of epithelial cell migration|positive regulation of hormone biosynthetic process|positive regulation of nitric-oxide synthase activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation vascular endothelial growth factor production|regulation of transcription from RNA polymerase II promoter in response to oxidative stress|regulation of transforming growth factor-beta2 production	cytoplasm|nucleolus|transcription factor complex	histone acetyltransferase binding|Hsp90 protein binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription factor binding|transcription regulatory region DNA binding			kidney(3)|lung(1)	4				OV - Ovarian serous cystadenocarcinoma(108;1.62e-09)|BRCA - Breast invasive adenocarcinoma(234;0.189)		CCGCTGAAACGCCAAAGCCAC	0.403000													49	81					0	0	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72175990	72175990	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr14:72175990G>A	uc001xms.2	+	15	4228	c.3880G>A	c.(3880-3882)GCG>ACG	p.A1294T	SIPA1L1_uc001xmt.2_Missense_Mutation_p.A1273T|SIPA1L1_uc001xmu.2_Missense_Mutation_p.A1273T|SIPA1L1_uc001xmv.2_Missense_Mutation_p.A1294T|SIPA1L1_uc010ttm.1_Missense_Mutation_p.A748T|SIPA1L1_uc001xmw.2_Missense_Mutation_p.A59T	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1294	Ser-rich.				actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		CTCCAGCAATGCGTCAAGTGC	0.483000													17	56					0	0	0	0
EML5	161436	broad.mit.edu	37	14	89088975	89088975	+	Silent	SNP	A	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr14:89088975A>G	uc001xxg.2	-	37	5172	c.4986T>C	c.(4984-4986)GAT>GAC	p.D1662D	EML5_uc001xxf.2_Silent_p.D449D|EML5_uc001xxh.1_Silent_p.D793D|EML5_uc001xxd.2_5'Flank|EML5_uc001xxe.2_5'Flank	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	1654						cytoplasm|microtubule				ovary(3)	3						AACGAACACAATCTGTGGCTT	0.473000													23	55					0	0	0	0
RIN3	79890	broad.mit.edu	37	14	93151468	93151468	+	Silent	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr14:93151468G>A	uc001yap.2	+	9	2756	c.2604G>A	c.(2602-2604)AAG>AAA	p.K868K	RIN3_uc010auk.2_Silent_p.K530K|RIN3_uc001yaq.2_Silent_p.K793K|RIN3_uc001yas.1_Silent_p.K530K	NM_024832	NP_079108	Q8TB24	RIN3_HUMAN	Ras and Rab interactor 3	868					endocytosis|signal transduction	cytoplasmic membrane-bounded vesicle|early endosome	GTPase activator activity|Ras GTPase binding			lung(2)|ovary(1)	3		all_cancers(154;0.0701)				CTCTCAACAAGGCCCGGGCCT	0.662000													10	33					0	0	0	0
SERPINA1	5265	broad.mit.edu	37	14	94845935	94845935	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr14:94845935G>T	uc001ycx.3	-	4	1192	c.931C>A	c.(931-933)CAT>AAT	p.H311N	SERPINA1_uc001ycw.3_RNA|SERPINA1_uc010auw.2_Missense_Mutation_p.H311N|SERPINA1_uc010aux.2_Missense_Mutation_p.H311N|SERPINA1_uc001ycy.3_Missense_Mutation_p.H311N|SERPINA1_uc010auy.2_Missense_Mutation_p.H311N|SERPINA1_uc001ycz.3_Missense_Mutation_p.H311N|SERPINA1_uc010auz.2_Missense_Mutation_p.H311N|SERPINA1_uc010ava.2_Missense_Mutation_p.H311N|SERPINA1_uc001ydb.3_Missense_Mutation_p.H311N|SERPINA1_uc010avb.2_Missense_Mutation_p.H311N|SERPINA1_uc001ydc.3_Missense_Mutation_p.H311N|SERPINA1_uc001yda.1_Missense_Mutation_p.H311N	NM_000295	NP_000286	P01009	A1AT_HUMAN	serine proteinase inhibitor, clade A, member 1	311					acute-phase response|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen|proteinaceous extracellular matrix	protease binding|serine-type endopeptidase inhibitor activity			skin(1)	1		all_cancers(154;0.0649)|all_epithelial(191;0.223)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)	Alpha-1-proteinase inhibitor(DB00058)	TTGGGTAAATGTAAGCTGGCA	0.493000									Alpha-1-Antitrypsin_Deficiency				30	80					5.60225e-13	7.61654e-13	1	0
SERPINA5	5104	broad.mit.edu	37	14	95054055	95054055	+	Missense_Mutation	SNP	A	T	T	rs144727156	byFrequency	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr14:95054055A>T	uc001ydm.2	+	3	566	c.356A>T	c.(355-357)AAC>ATC	p.N119I	SERPINA5_uc010ave.2_Missense_Mutation_p.N119I|SERPINA5_uc001ydn.1_Missense_Mutation_p.N119I	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	119					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	CAGGAACTCAACCAGCCCAGA	0.567000													11	22					0	0	0	0
SNORD114-28	767609	broad.mit.edu	37	14	101454501	101454501	+	5'Flank	SNP	T	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr14:101454501T>A	uc001yjs.2	+						SNORD114-27_uc001yjr.2_RNA|SNORD114-29_uc001yjt.1_5'Flank	NR_003221				Homo sapiens small nucleolar RNA, C/D box 114-28 (SNORD114-28), non-coding RNA.												0						AGAATCCTGGTTCAGTGTTGA	0.333000													16	30					0	0	0	0
APBA2	321	broad.mit.edu	37	15	29346999	29346999	+	Silent	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr15:29346999C>T	uc001zck.2	+	3	1119	c.912C>T	c.(910-912)ACC>ACT	p.T304T	APBA2_uc010azj.2_Silent_p.T304T|APBA2_uc010uat.1_Silent_p.T304T|APBA2_uc001zcl.2_Silent_p.T304T|APBA2_uc010uas.1_Silent_p.T304T	NM_005503	NP_005494	Q99767	APBA2_HUMAN	amyloid beta A4 precursor protein-binding,	304					nervous system development|protein transport		protein binding				0		all_lung(180;1.73e-12)|Breast(32;2.89e-05)|Colorectal(260;0.234)		all cancers(64;7.44e-11)|Epithelial(43;5.74e-10)|GBM - Glioblastoma multiforme(186;0.026)|BRCA - Breast invasive adenocarcinoma(123;0.0286)|Lung(196;0.24)		AGCCCAAGACCAGGACCCCAG	0.677000													5	24					0	0	0	0
VPS13C	54832	broad.mit.edu	37	15	62167104	62167104	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr15:62167104C>A	uc002agz.2	-	77	10459	c.10385G>T	c.(10384-10386)GGA>GTA	p.G3462V	VPS13C_uc002aha.2_Missense_Mutation_p.G3419V|VPS13C_uc002ahb.1_Missense_Mutation_p.G3462V|VPS13C_uc002ahc.1_Missense_Mutation_p.G3419V	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	3462					protein localization					ovary(2)	2						GCTTCTCACTCCAATCACTAA	0.299000													13	18					1.96292e-10	2.4741e-10	1	0
Unknown	0	broad.mit.edu	37	15	102304772	102304772	+	5'Flank	SNP	T	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr15:102304772T>C	uc002cbx.1	-						uc002ccc.1_5'Flank|uc002ccf.3_RNA|uc002ccg.3_5'Flank|uc010uth.1_5'Flank|uc002cci.2_5'Flank|uc002ccj.2_5'Flank|uc002cck.2_5'Flank|uc002ccl.1_5'Flank|uc002ccm.1_5'Flank					DQ582460																		CACAGCGGCGTGACGAGACTC	0.587000													3	9					0	0	0	0
GPR139	124274	broad.mit.edu	37	16	20043388	20043388	+	Missense_Mutation	SNP	C	G	G	rs140063049	byFrequency	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr16:20043388C>G	uc002dgu.1	-	2	893	c.731G>C	c.(730-732)CGC>CCC	p.R244P	GPR139_uc010vaw.1_Missense_Mutation_p.R151P	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	244	Helical; Name=6; (Potential).					integral to membrane|plasma membrane				ovary(2)	2						CATGATGATGCGGGGGGCCCA	0.542000													27	59					0	0	0	0
DCUN1D3	123879	broad.mit.edu	37	16	20873495	20873496	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr16:20873495_20873496GG>TT	uc002dhz.2	-	2	506_507	c.365_366CC>AA	c.(364-366)CCC>CAA	p.P122Q	ERI2_uc002dht.3_Intron	NM_173475	NP_775746	Q8IWE4	DCNL3_HUMAN	DCN1, defective in cullin neddylation 1, domain	122	DCUN1.				negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|positive regulation of apoptosis|response to gamma radiation|response to UV-C	perinuclear region of cytoplasm				ovary(2)	2				GBM - Glioblastoma multiforme(48;0.249)		GAAATTCTGTGGGGTCAACACA	0.485000													31	90					0	0	0	0
Unknown	0	broad.mit.edu	37	16	33020772	33020772	+	IGR	SNP	A	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr16:33020772A>C								SLC6A10P (124309 upstream) : MIR1826 (944736 downstream)																							GCCAGGCTCCAGGGAAGGGAC	0.562000													110	310					0	0	0	0
N4BP1	9683	broad.mit.edu	37	16	48595684	48595684	+	Silent	SNP	A	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr16:48595684A>G	uc002efp.2	-	2	1107	c.870T>C	c.(868-870)TCT>TCC	p.S290S		NM_153029	NP_694574	O75113	N4BP1_HUMAN	Nedd4 binding protein 1	290					negative regulation of proteasomal ubiquitin-dependent protein catabolic process|negative regulation of protein ubiquitination	nucleolus|PML body					0		all_cancers(37;0.179)|all_lung(18;0.11)				GCCTTTCTTCAGAATCAGAAA	0.408000													19	46					0	0	0	0
SLC12A4	6560	broad.mit.edu	37	16	67984561	67984561	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr16:67984561C>T	uc002euz.2	-	11	1591	c.1450G>A	c.(1450-1452)GAC>AAC	p.D484N	SLC12A4_uc010ceu.2_Missense_Mutation_p.D478N|SLC12A4_uc010vkh.1_Missense_Mutation_p.D453N|SLC12A4_uc010vki.1_Missense_Mutation_p.D484N|SLC12A4_uc010vkj.1_Missense_Mutation_p.D486N|SLC12A4_uc002eva.2_Missense_Mutation_p.D484N|SLC12A4_uc002evb.2_Intron	NM_005072	NP_005063	Q9UP95	S12A4_HUMAN	solute carrier family 12, member 4 isoform a	484	Cytoplasmic (Potential).				cell volume homeostasis|potassium ion transport|sodium ion transport	integral to plasma membrane|membrane fraction	potassium:chloride symporter activity			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	ACTCACTTGTCCCGGAGAACC	0.632000													3	15					0	0	0	0
ATP2C2	9914	broad.mit.edu	37	16	84492912	84492912	+	Silent	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr16:84492912C>T	uc002fhx.2	+	23	2342	c.2253C>T	c.(2251-2253)ACC>ACT	p.T751T	ATP2C2_uc010chj.2_Silent_p.T751T|ATP2C2_uc002fhy.2_Silent_p.T768T|ATP2C2_uc002fhz.2_Silent_p.T600T|ATP2C2_uc002fia.2_5'Flank	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	751	Helical; Name=6; (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						CTCTGTCCACCGTGTTCAACC	0.642000													26	73					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7577142	7577143	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr17:7577142_7577143CC>AA	uc002gim.2	-	8	989_990	c.795_796GG>TT	c.(793-798)CTGGGA>CTTTGA	p.G266*	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Nonsense_Mutation_p.G266*|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Nonsense_Mutation_p.G134*|TP53_uc010cng.1_Nonsense_Mutation_p.G134*|TP53_uc002gii.1_Nonsense_Mutation_p.G134*|TP53_uc010cnh.1_Nonsense_Mutation_p.G266*|TP53_uc010cni.1_Nonsense_Mutation_p.G266*|TP53_uc002gij.2_Nonsense_Mutation_p.G266*	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	266	|Interaction with E4F1.|Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		G -> R (in sporadic cancers; somatic mutation).|G -> V (in sporadic cancers; somatic mutation).|G -> E (in sporadic cancers; somatic mutation).|G -> A (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.G266E(45)|p.G266R(42)|p.G266V(31)|p.G266*(12)|p.0?(7)|p.G266fs*79(5)|p.?(3)|p.G262_F270delGNLLGRNSF(2)|p.G266A(2)|p.G266G(2)|p.G262_S269delGNLLGRNS(2)|p.G266_E271delGRNSFE(2)|p.L265L(2)|p.G266T(1)|p.G266_N268delGRN(1)|p.E258fs*71(1)|p.G266fs*9(1)|p.G262fs*2(1)|p.L265_R267delLGR(1)|p.L265_K305del41(1)|p.G266fs*4(1)|p.L265P(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CTGTTCCGTCCCAGTAGATTAC	0.520000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			8	13					0	0	0	0
ARHGEF15	22899	broad.mit.edu	37	17	8215500	8215500	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr17:8215500G>A	uc002glc.2	+	2	264	c.143G>A	c.(142-144)CGA>CAA	p.R48Q	ARHGEF15_uc002glb.1_Missense_Mutation_p.R48Q|ARHGEF15_uc002gld.2_Missense_Mutation_p.R48Q|ARHGEF15_uc010vuw.1_Missense_Mutation_p.R48Q	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15	48	Pro-rich.				negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						GAACTACCCCGAAACTCCAAT	0.632000													50	97					0	0	0	0
MYH1	4619	broad.mit.edu	37	17	10402040	10402040	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr17:10402040G>T	uc002gmo.2	-	30	4178	c.4084C>A	c.(4084-4086)CAG>AAG	p.Q1362K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1362	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						ATTGCTCTCTGTAGCTCGGCC	0.592000													41	85					4.14481e-20	6.23008e-20	1	0
MYO15A	51168	broad.mit.edu	37	17	18067125	18067125	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr17:18067125T>A	uc010vxh.1	+	59	10098	c.9760T>A	c.(9760-9762)TAT>AAT	p.Y3254N	MYO15A_uc010vxi.1_Missense_Mutation_p.Y518N|MYO15A_uc010vxk.1_5'UTR|MYO15A_uc010vxl.1_Missense_Mutation_p.Y243N|MYO15A_uc002gsl.2_Missense_Mutation_p.Y261N|MYO15A_uc010vxm.1_Missense_Mutation_p.Y176N|MYO15A_uc002gsm.1_Missense_Mutation_p.Y176N|MYO15A_uc010cpv.2_RNA	NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	3254	Tail.|FERM.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CTTCAATGAATATGTTATCTT	0.463000													7	17					0	0	0	0
Unknown	0	broad.mit.edu	37	17	21730864	21730864	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr17:21730864C>A	uc002gyy.3	+	2	291	c.166C>A	c.(166-168)CTT>ATT	p.L56I						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		TGGCCGCAGTCTTTCTGACTA	0.512000													26	41					3.6726e-16	5.2903e-16	1	0
PSMD11	5717	broad.mit.edu	37	17	30801833	30801833	+	Silent	SNP	A	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr17:30801833A>G	uc010cta.1	+	8	880	c.840A>G	c.(838-840)GCA>GCG	p.A280A	PSMD11_uc010wbz.1_Silent_p.A280A|PSMD11_uc002hhm.2_Silent_p.A280A	NM_002815	NP_002806	O00231	PSD11_HUMAN	proteasome 26S non-ATPase subunit 11	280	PCI.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome complex	protein binding			ovary(1)	1		Breast(31;0.159)|Ovarian(249;0.182)	BRCA - Breast invasive adenocarcinoma(9;0.109)			TTCGGTATGCAGGGAGGCAGG	0.488000													3	47					0	0	0	0
IMP5	162540	broad.mit.edu	37	17	43922823	43922823	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr17:43922823A>T	uc010wka.1	+	1	551	c.551A>T	c.(550-552)GAC>GTC	p.D184V	LOC100128977_uc010wjz.1_Intron	NM_175882	NP_787078	Q8IUH8	IMP5_HUMAN	intramembrane protease 5 precursor	184	Extracellular (Potential).					integral to membrane	aspartic-type endopeptidase activity			pancreas(2)	2	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.148)		CCCATCATCGACTACAACATG	0.637000													37	86					0	0	0	0
MED13	9969	broad.mit.edu	37	17	60028197	60028197	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr17:60028197G>T	uc002izo.2	-	28	6357	c.6280C>A	c.(6280-6282)CTT>ATT	p.L2094I		NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	2094					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						TTAAGAAAAAGGGGACACTGA	0.413000													4	72					0.00024832	0.000267082	1	0
TBC1D3P2	440452	broad.mit.edu	37	17	60342256	60342257	+	RNA	DNP	AG	TT	TT			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr17:60342256_60342257AG>TT	uc010woz.1	-	14		c.1872_1873CT>AA				NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						ATGTCTCTCGAGCTGCACTCTT	0.485000													27	59					0	0	0	0
TAF4B	6875	broad.mit.edu	37	18	23873435	23873435	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr18:23873435C>T	uc002kvu.3	+	9	2261	c.1772C>T	c.(1771-1773)TCA>TTA	p.S591L	TAF4B_uc002kvs.3_RNA|TAF4B_uc002kvt.3_Missense_Mutation_p.S596L	NM_005640	NP_005631	Q92750	TAF4B_HUMAN	TAF4b RNA polymerase II, TATA box binding	591					transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleolus|transcription factor TFIID complex	DNA binding|NF-kappaB binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)|skin(1)	3	all_cancers(21;0.00151)|Lung NSC(5;0.000401)|all_lung(6;0.00115)|Ovarian(20;0.124)		Epithelial(2;9.57e-07)|all cancers(3;5.15e-06)|OV - Ovarian serous cystadenocarcinoma(3;1.96e-05)|LUSC - Lung squamous cell carcinoma(2;0.00594)|Lung(2;0.0267)			AAAATTCTGTCACTTCAAGCA	0.289000													9	13					0	0	0	0
TAF4B	6875	broad.mit.edu	37	18	23873440	23873440	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr18:23873440C>T	uc002kvu.3	+	9	2266	c.1777C>T	c.(1777-1779)CAA>TAA	p.Q593*	TAF4B_uc002kvs.3_RNA|TAF4B_uc002kvt.3_Nonsense_Mutation_p.Q598*	NM_005640	NP_005631	Q92750	TAF4B_HUMAN	TAF4b RNA polymerase II, TATA box binding	593					transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleolus|transcription factor TFIID complex	DNA binding|NF-kappaB binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)|skin(1)	3	all_cancers(21;0.00151)|Lung NSC(5;0.000401)|all_lung(6;0.00115)|Ovarian(20;0.124)		Epithelial(2;9.57e-07)|all cancers(3;5.15e-06)|OV - Ovarian serous cystadenocarcinoma(3;1.96e-05)|LUSC - Lung squamous cell carcinoma(2;0.00594)|Lung(2;0.0267)			TCTGTCACTTCAAGCATCTCC	0.284000													10	14					0	0	0	0
CDH19	28513	broad.mit.edu	37	18	64172320	64172320	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr18:64172320C>G	uc002lkc.1	-	12	2186	c.2048G>C	c.(2047-2049)AGG>ACG	p.R683T	CDH19_uc010dql.1_RNA|CDH19_uc010xey.1_3'UTR	NM_021153	NP_066976	Q9H159	CAD19_HUMAN	cadherin 19, type 2 preproprotein	683	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2		Esophageal squamous(42;0.0132)				CAAAGACTGCCTGTATAGGCT	0.483000													47	56					0	0	0	0
MARCH2	51257	broad.mit.edu	37	19	8486776	8486776	+	Missense_Mutation	SNP	G	A	A	rs141281179		TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr19:8486776G>A	uc002mjv.2	+	3	493	c.52G>A	c.(52-54)GGC>AGC	p.G18S	MARCH2_uc002mjw.2_Missense_Mutation_p.G18S|MARCH2_uc002mjx.2_Missense_Mutation_p.G18S	NM_016496	NP_057580	Q9P0N8	MARH2_HUMAN	membrane-associated ring finger (C3HC4) 2	18					endocytosis	cytoplasmic vesicle|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						TGACTGCTCCGGCAGCCCTGC	0.677000													22	67					0	0	0	0
OR7G2	390882	broad.mit.edu	37	19	9213869	9213869	+	Silent	SNP	C	T	T	rs141362700		TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr19:9213869C>T	uc010xkk.1	-	1	114	c.114G>A	c.(112-114)CTG>CTA	p.L38L		NM_001005193	NP_001005193	Q8NG99	OR7G2_HUMAN	olfactory receptor, family 7, subfamily G,	17	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GATCCTCTATCAGTCCCAGGA	0.458000													20	42					0	0	0	0
RGL3	57139	broad.mit.edu	37	19	11510580	11510580	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr19:11510580G>T	uc002mrp.2	-	16	1761	c.1697C>A	c.(1696-1698)CCT>CAT	p.P566H	RGL3_uc002mrn.2_Missense_Mutation_p.P330H|RGL3_uc002mrm.2_Missense_Mutation_p.P330H|RGL3_uc002mro.2_Missense_Mutation_p.P572H	NM_001035223	NP_001030300	Q3MIN7	RGL3_HUMAN	ral guanine nucleotide dissociation	566	Pro-rich.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular				ovary(1)	1						ACTGCCAGCAGGAGCATCTCT	0.667000													22	37					7.41877e-09	9.06739e-09	1	0
TMEM59L	25789	broad.mit.edu	37	19	18729276	18729276	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr19:18729276G>C	uc002njy.3	+	7	961	c.874G>C	c.(874-876)GCG>CCG	p.A292P		NM_012109	NP_036241	Q9UK28	TM59L_HUMAN	brain-specific membrane-anchored protein	292						Golgi membrane|integral to membrane|membrane fraction				ovary(2)|skin(2)	4						CCTGGTGACCGCGCCTGGCCA	0.667000													3	14					0	0	0	0
APLP1	333	broad.mit.edu	37	19	36362583	36362583	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr19:36362583C>T	uc002oce.2	+	5	745	c.607C>T	c.(607-609)CGT>TGT	p.R203C	APLP1_uc010xsz.1_Missense_Mutation_p.R164C|APLP1_uc002ocf.2_Missense_Mutation_p.R203C|APLP1_uc002ocg.2_Missense_Mutation_p.R106C|APLP1_uc010xta.1_Missense_Mutation_p.R197C	NM_005166	NP_005157	P51693	APLP1_HUMAN	amyloid precursor-like protein 1 isoform 2	203	Extracellular (Potential).				apoptosis|cell adhesion|cellular response to norepinephrine stimulus|endocytosis|negative regulation of cAMP biosynthetic process|nervous system development|organ morphogenesis	basement membrane|integral to membrane|perinuclear region of cytoplasm|plasma membrane	alpha-2A adrenergic receptor binding|alpha-2B adrenergic receptor binding|alpha-2C adrenergic receptor binding|heparin binding|identical protein binding|metal ion binding			ovary(2)	2	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGATCGGTTCCGTGGTGTGGA	0.637000													23	26					0	0	0	0
Unknown	0	broad.mit.edu	37	19	39292310	39292310	+	IGR	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr19:39292310C>A								LGALS7B (9917 upstream) : LGALS4 (2 downstream)																							GAGACACACACTCATGAGACA	0.378000													10	13					0.00621372	0.00642615	1	0
SIGLEC12	89858	broad.mit.edu	37	19	52000164	52000164	+	Missense_Mutation	SNP	G	T	T	rs145034575		TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr19:52000164G>T	uc002pwx.1	-	7	1625	c.1569C>A	c.(1567-1569)GAC>GAA	p.D523E	SIGLEC12_uc002pww.1_Missense_Mutation_p.D405E|SIGLEC12_uc010eoy.1_Missense_Mutation_p.D250E	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	523	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CAGCGTTTGCGTCCTCCATGC	0.577000													27	34					3.65163e-15	5.10806e-15	1	0
DPRX	503834	broad.mit.edu	37	19	54135364	54135364	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr19:54135364C>A	uc002qcf.1	+	1	55	c.4C>A	c.(4-6)CCA>ACA	p.P2T		NM_001012728	NP_001012746	A6NFQ7	DPRX_HUMAN	divergent-paired related homeobox	2						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.013)		TTAGAAGATGCCAGGCTCAGA	0.498000													36	49					1.07637e-12	1.44711e-12	1	0
RNASEH1	246243	broad.mit.edu	37	2	3598055	3598055	+	Silent	SNP	G	A	A	rs139176330		TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:3598055G>A	uc002qxt.2	-	4	507	c.417C>T	c.(415-417)TTC>TTT	p.F139F	RNASEH1_uc002qxs.2_Silent_p.F22F	NM_002936	NP_002927	O60930	RNH1_HUMAN	ribonuclease H1	139	RNase H.				RNA catabolic process	cytoplasm	magnesium ion binding|ribonuclease H activity|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)			OV - Ovarian serous cystadenocarcinoma(76;0.0713)|Epithelial(75;0.167)|all cancers(51;0.22)		AGACGACGACGAAGTCTCCTG	0.493000													4	123					0	0	0	0
VIT	5212	broad.mit.edu	37	2	37035846	37035846	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:37035846G>C	uc002rpl.2	+	15	1842	c.1621G>C	c.(1621-1623)GAG>CAG	p.E541Q	VIT_uc002rpm.2_Missense_Mutation_p.E519Q|VIT_uc010ezv.2_Missense_Mutation_p.E497Q|VIT_uc010ezw.2_Missense_Mutation_p.E498Q	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	526	VWFA 2.					proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				CAAAGAGTTTGAGATTTCCGA	0.582000													26	52					0	0	0	0
HEATR5B	54497	broad.mit.edu	37	2	37232867	37232867	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:37232867C>A	uc002rpp.1	-	30	4909	c.4813G>T	c.(4813-4815)GAG>TAG	p.E1605*	HEATR5B_uc010ezy.1_Nonsense_Mutation_p.E189*	NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	1605							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				ATGGGCTCCTCAGGTCTAGGG	0.408000													15	30					0.000308642	0.000330493	1	0
ZFP36L2	678	broad.mit.edu	37	2	43451842	43451842	+	Silent	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:43451842C>A	uc002rsv.3	-	2	1392	c.1101G>T	c.(1099-1101)CCG>CCT	p.P367P	LOC100129726_uc010ynx.1_5'Flank	NM_006887	NP_008818	P47974	TISD_HUMAN	zinc finger protein 36, C3H type-like 2	367					cell proliferation	nucleus	DNA binding|RNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Acute lymphoblastic leukemia(82;0.00323)|all_hematologic(82;0.00824)				TGCTGAGCTCCGGACCGAAGG	0.532000													9	16					0.00621372	0.00642615	1	0
EIF2AK3	9451	broad.mit.edu	37	2	88874652	88874652	+	Silent	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:88874652G>A	uc002stc.3	-	13	2551	c.2349C>T	c.(2347-2349)CAC>CAT	p.H783H		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	783	Cytoplasmic (Potential).|Protein kinase.				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						GTTCAAAGGAGTGCCCCTCAT	0.453000													109	204					0	0	0	0
CNGA3	1261	broad.mit.edu	37	2	99012576	99012576	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:99012576C>A	uc002syt.2	+	8	1360	c.943C>A	c.(943-945)CAC>AAC	p.H315N	CNGA3_uc002syu.2_Missense_Mutation_p.H297N|CNGA3_uc010fij.2_Missense_Mutation_p.H319N	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	315	Helical; (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						CATCATCATCCACTGGAATGC	0.478000													89	88					7.2861e-57	1.14496e-56	1	0
MAP4K4	9448	broad.mit.edu	37	2	102475479	102475479	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:102475479G>C	uc002tbg.2	+	14	1472	c.1417G>C	c.(1417-1419)GAA>CAA	p.E473Q	MAP4K4_uc002tbc.2_Missense_Mutation_p.E473Q|MAP4K4_uc002tbd.2_Missense_Mutation_p.E473Q|MAP4K4_uc002tbe.2_Missense_Mutation_p.E473Q|MAP4K4_uc002tbf.2_Missense_Mutation_p.E473Q|MAP4K4_uc010yvy.1_Missense_Mutation_p.E473Q|MAP4K4_uc002tbh.2_Missense_Mutation_p.E473Q|MAP4K4_uc002tbi.2_Missense_Mutation_p.E326Q|MAP4K4_uc010yvz.1_Missense_Mutation_p.E453Q|MAP4K4_uc002tbk.2_5'UTR|MAP4K4_uc002tbj.1_Missense_Mutation_p.E369Q	NM_145687	NP_663720	O95819	M4K4_HUMAN	mitogen-activated protein kinase kinase kinase	473					intracellular protein kinase cascade|regulation of JNK cascade|response to stress	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			stomach(1)|lung(1)|central_nervous_system(1)|skin(1)	4						GCGACAGCTAGAAGAGGAGCA	0.502000													27	165					0	0	0	0
IL1A	3552	broad.mit.edu	37	2	113535595	113535595	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:113535595G>A	uc002tig.2	-	6	1544	c.584C>T	c.(583-585)GCC>GTC	p.A195V		NM_000575	NP_000566	P01583	IL1A_HUMAN	interleukin 1, alpha proprotein	195					anti-apoptosis|apoptosis|cell proliferation|cellular response to heat|cytokine-mediated signaling pathway|fever generation|immune response|negative regulation of cell proliferation|positive regulation of angiogenesis|positive regulation of cell division|positive regulation of cytokine secretion|positive regulation of interleukin-2 biosynthetic process|positive regulation of mitosis|positive regulation vascular endothelial growth factor production|response to copper ion	cytosol|extracellular space	copper ion binding|cytokine activity|interleukin-1 receptor binding			lung(1)	1						TTCATCTTGGGCAGTCACATA	0.388000													14	58					0	0	0	0
ZRANB3	84083	broad.mit.edu	37	2	136107559	136107559	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:136107559C>A	uc002tum.2	-	5	703	c.586G>T	c.(586-588)GAA>TAA	p.E196*	ZRANB3_uc002tuk.2_5'UTR|ZRANB3_uc002tul.2_Nonsense_Mutation_p.E196*|ZRANB3_uc002tun.1_Nonsense_Mutation_p.E136*	NM_032143	NP_115519	Q5FWF4	ZRAB3_HUMAN	zinc finger, RAN-binding domain containing 3	196	Helicase ATP-binding.					intracellular	ATP binding|DNA binding|endonuclease activity|helicase activity|zinc ion binding			lung(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.135)		AATACCTCTTCAGGCCTTCCT	0.408000													11	36					4.3838e-07	5.07598e-07	1	0
MBD5	55777	broad.mit.edu	37	2	149247953	149247953	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:149247953C>A	uc002twm.3	+	12	5041	c.4053C>A	c.(4051-4053)AGC>AGA	p.S1351R	MBD5_uc010zbs.1_Intron|MBD5_uc010fns.2_Missense_Mutation_p.S1351R|MBD5_uc002two.2_Missense_Mutation_p.S609R|MBD5_uc002twp.2_Missense_Mutation_p.S401R	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	1351						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		GTGTGCCTAGCCCTTCAGATG	0.408000													21	47					1.01871e-10	1.30438e-10	1	0
SLC4A10	57282	broad.mit.edu	37	2	162751316	162751316	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:162751316C>G	uc002ubx.3	+	11	1506	c.1322C>G	c.(1321-1323)CCC>CGC	p.P441R	SLC4A10_uc010fpa.1_Missense_Mutation_p.P453R|SLC4A10_uc010zcr.1_RNA|SLC4A10_uc002uby.3_Missense_Mutation_p.P411R|SLC4A10_uc010zcs.1_Missense_Mutation_p.P422R	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	441	Cytoplasmic (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						ATAGAGCCTCCCAAAAATGTT	0.328000													18	57					0	0	0	0
G6PC2	57818	broad.mit.edu	37	2	169764237	169764237	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:169764237C>A	uc002uem.2	+	5	808	c.716C>A	c.(715-717)GCC>GAC	p.A239D	G6PC2_uc002uen.2_3'UTR|G6PC2_uc010fpv.2_Missense_Mutation_p.A123D	NM_021176	NP_066999	Q9NQR9	G6PC2_HUMAN	islet-specific glucose-6-phosphatase-related	239	Lumenal (Potential).				gluconeogenesis|glucose homeostasis|glucose transport|regulation of insulin secretion|transmembrane transport	endoplasmic reticulum membrane|integral to membrane	glucose-6-phosphatase activity			pancreas(1)	1						GTGCCCATAGCCAAAAAGTGG	0.512000													30	59					8.16721e-17	1.19064e-16	1	0
LRP2	4036	broad.mit.edu	37	2	170129512	170129512	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:170129512C>A	uc002ues.2	-	15	2254	c.2041G>T	c.(2041-2043)GAT>TAT	p.D681Y	LRP2_uc010zdf.1_Missense_Mutation_p.D612Y	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	681	EGF-like 3.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CCATCATTATCTGTTCTGTGG	0.463000													48	116					8.00217e-19	1.18805e-18	1	0
MYO3B	140469	broad.mit.edu	37	2	171259494	171259494	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:171259494G>A	uc002ufy.2	+	19	2409	c.2266G>A	c.(2266-2268)GCT>ACT	p.A756T	MYO3B_uc002ufv.2_Missense_Mutation_p.A743T|MYO3B_uc010fqb.1_Missense_Mutation_p.A743T|MYO3B_uc002ufz.2_Missense_Mutation_p.A756T|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	756	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						GCATGTTTTTGCTCTTGAGCA	0.398000													5	31					0	0	0	0
ZNF385B	151126	broad.mit.edu	37	2	180409678	180409678	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:180409678G>A	uc002unn.3	-	4	876	c.272C>T	c.(271-273)ACT>ATT	p.T91I	ZNF385B_uc002unj.2_5'UTR|ZNF385B_uc002unk.2_RNA|ZNF385B_uc002unl.2_5'UTR|ZNF385B_uc002unm.2_Missense_Mutation_p.T15I	NM_152520	NP_689733	Q569K4	Z385B_HUMAN	zinc finger protein 385B isoform 1	91						nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			Epithelial(96;0.174)|OV - Ovarian serous cystadenocarcinoma(117;0.201)			AGGAAGGGTAGTAGTGTGGCA	0.448000													37	88					0	0	0	0
ITGA4	3676	broad.mit.edu	37	2	182395331	182395331	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:182395331G>C	uc002unu.2	+	24	3382	c.2619G>C	c.(2617-2619)TTG>TTC	p.L873F	ITGA4_uc002unv.2_Missense_Mutation_p.L118F	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	873	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	TGCAGACCTTGAAAGGCATAG	0.413000													23	48					0	0	0	0
COL3A1	1281	broad.mit.edu	37	2	189849935	189849935	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:189849935C>A	uc002uqj.1	+	3	412	c.295C>A	c.(295-297)CCT>ACT	p.P99T		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	99					axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	TACTCGCCCTCCTAATGGTCA	0.343000													22	36					6.32553e-13	8.55183e-13	1	0
GTF3C3	9330	broad.mit.edu	37	2	197640813	197640813	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:197640813C>G	uc002uts.2	-	12	1706	c.1616G>C	c.(1615-1617)CGT>CCT	p.R539P	GTF3C3_uc010zgu.1_Missense_Mutation_p.R510P	NM_012086	NP_036218	Q9Y5Q9	TF3C3_HUMAN	general transcription factor IIIC, polypeptide	539						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(3)|breast(3)|pancreas(1)	7						CAGAGTAGAACGATGAAGCAA	0.323000													23	51					0	0	0	0
ABI2	10152	broad.mit.edu	37	2	204255845	204255845	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:204255845T>A	uc002vaa.2	+	5	792	c.557T>A	c.(556-558)ATG>AAG	p.M186K	ABI2_uc010zig.1_RNA|ABI2_uc002uzz.2_Missense_Mutation_p.M180K|ABI2_uc010zih.1_Intron|ABI2_uc010zii.1_Missense_Mutation_p.M180K|ABI2_uc010zij.1_Missense_Mutation_p.M124K|ABI2_uc002vab.2_Missense_Mutation_p.M135K|ABI2_uc010zik.1_Missense_Mutation_p.M21K|ABI2_uc010zil.1_Missense_Mutation_p.M21K|ABI2_uc010zim.1_Missense_Mutation_p.M21K|ABI2_uc002vac.2_Missense_Mutation_p.M21K	NM_005759	NP_005750	Q9NYB9	ABI2_HUMAN	abl interactor 2	186	Pro-rich.				actin polymerization or depolymerization|cell migration|peptidyl-tyrosine phosphorylation	cytoskeleton|cytosol|filopodium|lamellipodium	cytoskeletal adaptor activity|DNA binding|kinase binding|proline-rich region binding|SH3 domain binding|ubiquitin protein ligase binding				0						AGTCCCCCTATGTCAGGGAAA	0.388000													5	22					0	0	0	0
ERBB4	2066	broad.mit.edu	37	2	212530075	212530075	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:212530075T>A	uc002veg.1	-	15	1942	c.1844A>T	c.(1843-1845)CAC>CTC	p.H615L	ERBB4_uc002veh.1_Missense_Mutation_p.H615L|ERBB4_uc010zji.1_Missense_Mutation_p.H615L|ERBB4_uc010zjj.1_Missense_Mutation_p.H615L|ERBB4_uc010fut.1_Missense_Mutation_p.H615L	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	615	Extracellular (Potential).|Cys-rich.				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		ATGGCATGGGTGGCACTCCCG	0.473000										TSP Lung(8;0.080)			14	43					0	0	0	0
SPAG16	79582	broad.mit.edu	37	2	214794821	214794821	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:214794821T>C	uc002veq.2	+	12	1444	c.1352T>C	c.(1351-1353)GTG>GCG	p.V451A	SPAG16_uc010fuz.1_Missense_Mutation_p.V302A|SPAG16_uc002ver.2_Missense_Mutation_p.V397A|SPAG16_uc010zjk.1_Missense_Mutation_p.V357A	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1	451	WD 3.				cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		GGCAATTTTGTGGCTTCCTCC	0.423000													28	41					0	0	0	0
CUL3	8452	broad.mit.edu	37	2	225368493	225368493	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:225368493A>C	uc002vny.2	-	9	1637	c.1253T>G	c.(1252-1254)CTT>CGT	p.L418R	CUL3_uc010zls.1_Missense_Mutation_p.L352R|CUL3_uc010fwy.1_Missense_Mutation_p.L424R	NM_003590	NP_003581	Q13618	CUL3_HUMAN	cullin 3	418					cell cycle arrest|cell migration|cyclin catabolic process|cytokinesis|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|mitotic anaphase|negative regulation of Rho protein signal transduction|positive regulation of cell proliferation|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|Golgi apparatus|nucleus|polar microtubule	ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|kidney(1)	4		all_lung(227;0.00877)|Lung NSC(271;0.011)|Renal(207;0.0112)|all_hematologic(139;0.138)		Epithelial(121;1.58e-11)|all cancers(144;1.43e-08)|Lung(261;0.00863)|LUSC - Lung squamous cell carcinoma(224;0.00902)		AAACCTAAAAAGGACCATTGC	0.303000													4	13					0	0	0	0
DOCK10	55619	broad.mit.edu	37	2	225717743	225717743	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:225717743G>T	uc010fwz.1	-	17	2224	c.1985C>A	c.(1984-1986)ACA>AAA	p.T662K	DOCK10_uc002vob.2_Missense_Mutation_p.T656K	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	662							GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		ACAATACTTTGTTGAATCGTA	0.368000													22	38					1.28384e-07	1.5082e-07	1	0
COL6A3	1293	broad.mit.edu	37	2	238249123	238249123	+	Silent	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:238249123G>A	uc002vwl.2	-	38	8721	c.8436C>T	c.(8434-8436)TTC>TTT	p.F2812F	COL6A3_uc002vwo.2_Silent_p.F2606F|COL6A3_uc010znj.1_Silent_p.F2205F|COL6A3_uc002vwj.2_Silent_p.F193F	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2812	VWFA 12.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		ACAGCCTCCCGAAGCGCATCA	0.547000													20	35					0	0	0	0
COL6A3	1293	broad.mit.edu	37	2	238283189	238283189	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:238283189G>T	uc002vwl.2	-	8	3830	c.3545C>A	c.(3544-3546)CCG>CAG	p.P1182Q	COL6A3_uc002vwo.2_Missense_Mutation_p.P976Q|COL6A3_uc010znj.1_Missense_Mutation_p.P575Q|COL6A3_uc002vwq.2_Missense_Mutation_p.P976Q|COL6A3_uc002vwr.2_Missense_Mutation_p.P775Q	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1182	Nonhelical region.|VWFA 6.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GGCAAAGTCCGGGATGAAGGA	0.622000													23	39					3.8784e-16	5.55369e-16	1	0
SIGLEC1	6614	broad.mit.edu	37	20	3679898	3679898	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr20:3679898G>C	uc002wja.2	-	7	1737	c.1737C>G	c.(1735-1737)GAC>GAG	p.D579E	SIGLEC1_uc002wiz.3_Missense_Mutation_p.D579E	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	579	Ig-like C2-type 5.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						CACTGTGGCCGTCCCGGGCCC	0.692000													7	15					0	0	0	0
MAVS	57506	broad.mit.edu	37	20	3845384	3845384	+	Silent	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr20:3845384C>T	uc002wjw.3	+	6	1276	c.1107C>T	c.(1105-1107)CTC>CTT	p.L369L	MAVS_uc002wjx.3_Silent_p.L228L|MAVS_uc002wjy.3_Silent_p.L67L	NM_020746	NP_065797	Q7Z434	MAVS_HUMAN	virus-induced signaling adapter	369	Cytoplasmic (Probable).				activation of innate immune response|cellular response to exogenous dsRNA|defense response to bacterium|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of chemokine (C-C motif) ligand 5 production|positive regulation of defense response to virus by host|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interleukin-8 production|positive regulation of IP-10 production|positive regulation of protein import into nucleus, translocation|positive regulation of protein phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription factor import into nucleus|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|positive regulation of type I interferon-mediated signaling pathway|response to virus	integral to membrane|mitochondrial outer membrane	CARD domain binding|protein kinase binding|signal transducer activity				0						GCATGGTGCTCACCAAGGTGT	0.592000													25	63					0	0	0	0
FRG1B	284802	broad.mit.edu	37	20	29628283	29628283	+	Silent	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr20:29628283G>C	uc010ztl.1	+	3	227	c.195G>C	c.(193-195)GGG>GGC	p.G65G	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Silent_p.G17G					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATGAAGCAGGGGACATAGAAG	0.378000													3	33					0	0	0	0
C20orf4	25980	broad.mit.edu	37	20	34828211	34828211	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr20:34828211A>T	uc002xfc.1	+	2	514	c.421A>T	c.(421-423)AGC>TGC	p.S141C	C20orf4_uc002xfd.1_Missense_Mutation_p.S141C|C20orf4_uc002xfe.1_Missense_Mutation_p.S141C	NM_015511	NP_056326	Q9Y312	CT004_HUMAN	hypothetical protein LOC25980	141											0	Breast(12;0.0162)	Myeloproliferative disorder(115;0.0393)				CAACTTCATCAGCGAAGCCAC	0.567000													78	81					0	0	0	0
PTPN1	5770	broad.mit.edu	37	20	49196356	49196356	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr20:49196356C>G	uc002xvl.2	+	8	1155	c.981C>G	c.(979-981)TTC>TTG	p.F327L	PTPN1_uc010zys.1_Missense_Mutation_p.F254L	NM_002827	NP_002818	P18031	PTN1_HUMAN	protein tyrosine phosphatase, non-receptor type	327					blood coagulation|interferon-gamma-mediated signaling pathway|negative regulation of insulin receptor signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytosol|endoplasmic reticulum membrane	protein tyrosine phosphatase activity|zinc ion binding				0		Lung NSC(126;0.163)			Clodronate(DB00720)|Tiludronate(DB01133)	GCAGGGAGTTCTTCCCAAATC	0.572000											OREG0026029	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	125					0	0	0	0
Unknown	0	broad.mit.edu	37	21	10862797	10862797	+	IGR	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr21:10862797G>T								None (None upstream) : TPTE (43946 downstream)																							CTGAGGTGAAGAAGCCTGGGG	0.572000													55	146					1.17673e-23	1.80233e-23	1	0
LIPI	149998	broad.mit.edu	37	21	15561702	15561702	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr21:15561702C>A	uc002yjm.2	-	2	158	c.148G>T	c.(148-150)GTA>TTA	p.V50L	LIPI_uc010gkw.1_5'UTR	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	29					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		GAATCCTTTACACTTAGCTGA	0.358000													22	36					1.22574e-08	1.4906e-08	1	0
NCAM2	4685	broad.mit.edu	37	21	22696776	22696776	+	Silent	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr21:22696776C>T	uc002yld.1	+	6	942	c.693C>T	c.(691-693)TCC>TCT	p.S231S	NCAM2_uc011acb.1_Silent_p.S89S|NCAM2_uc011acc.1_Silent_p.S256S	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	231	Ig-like C2-type 3.|Extracellular (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		TGACATTTTCCTGCAGGGCCT	0.493000													17	56					0	0	0	0
KRTAP11-1	337880	broad.mit.edu	37	21	32253791	32253791	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr21:32253791C>A	uc002yov.2	-	1	84	c.53G>T	c.(52-54)CGC>CTC	p.R18L		NM_175858	NP_787054	Q8IUC1	KR111_HUMAN	keratin associated protein 11-1	18						keratin filament	structural molecule activity			pancreas(1)	1						AACAATGCAGCGTCCTCCAAT	0.547000													34	59					2.48696e-23	3.76152e-23	1	0
FTCD	10841	broad.mit.edu	37	21	47570433	47570433	+	Missense_Mutation	SNP	G	C	C	rs149667449	byFrequency	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr21:47570433G>C	uc002zif.2	-	6	687	c.643C>G	c.(643-645)CGT>GGT	p.R215G	FTCD_uc002zig.2_Missense_Mutation_p.R215G|FTCD_uc002zih.2_Missense_Mutation_p.R215G|FTCD_uc010gqf.2_Missense_Mutation_p.R215G|FTCD_uc010gqg.1_Missense_Mutation_p.R84G	NM_006657	NP_006648	O95954	FTCD_HUMAN	formiminotransferase cyclodeaminase	215	Formiminotransferase C-subdomain (By similarity).				folic acid-containing compound metabolic process|histidine catabolic process	centriole|cytosol|Golgi apparatus	folic acid binding|formimidoyltetrahydrofolate cyclodeaminase activity|glutamate formimidoyltransferase activity			pancreas(1)|skin(1)	2	Breast(49;0.214)			Colorectal(79;0.235)	L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Tetrahydrofolic acid(DB00116)	TTCTTCAGACGTCCTGGCTGC	0.577000													16	46					0	0	0	0
THAP7	80764	broad.mit.edu	37	22	21354710	21354710	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr22:21354710C>T	uc002ztr.1	-	5	419	c.389G>A	c.(388-390)GGC>GAC	p.G130D	THAP7_uc002zts.1_Missense_Mutation_p.G130D|FLJ39582_uc002ztt.1_5'Flank|FLJ39582_uc002ztu.1_5'Flank|FLJ39582_uc002ztv.2_5'Flank	NM_001008695	NP_001008695	Q9BT49	THAP7_HUMAN	THAP domain containing 7 isoform 2	130					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck	C2H2 zinc finger domain binding|DNA binding|metal ion binding|protein N-terminus binding				0	all_cancers(11;1.83e-25)|all_epithelial(7;9.19e-23)|Lung NSC(8;3.06e-15)|all_lung(8;5.05e-14)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)			GGGCCCTCGGCCCTCGGAGCA	0.622000													3	8					0	0	0	0
LOC96610	96610	broad.mit.edu	37	22	23162156	23162156	+	RNA	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr22:23162156C>A	uc011aim.1	+	283		c.12932C>A								Parts of antibodies, mostly variable regions.												0						TCTCTGGCTCCAACTCGGGGA	0.597000													17	58					1.5739e-10	2.00465e-10	1	0
CABIN1	23523	broad.mit.edu	37	22	24515613	24515613	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr22:24515613A>G	uc002zzi.1	+	28	4707	c.4580A>G	c.(4579-4581)TAT>TGT	p.Y1527C	CABIN1_uc002zzj.1_Missense_Mutation_p.Y1448C|CABIN1_uc002zzl.1_Missense_Mutation_p.Y1527C	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	1527					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						CCCCAGCACTATAAGAGTCTC	0.647000													80	141					0	0	0	0
ASPHD2	57168	broad.mit.edu	37	22	26838460	26838460	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr22:26838460G>C	uc003acg.2	+	3	1319	c.922G>C	c.(922-924)GGG>CGG	p.G308R		NM_020437	NP_065170	Q6ICH7	ASPH2_HUMAN	aspartate beta-hydroxylase domain containing 2	308	Lumenal (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity			ovary(1)	1						GCTGGTGGTGGGGGGAGAGCC	0.552000													51	140					0	0	0	0
LARGE	9215	broad.mit.edu	37	22	33733754	33733754	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr22:33733754C>A	uc003and.3	-	11	1744	c.1165G>T	c.(1165-1167)GTG>TTG	p.V389L	LARGE_uc011amd.1_Missense_Mutation_p.V188L|LARGE_uc003ane.3_Missense_Mutation_p.V389L|LARGE_uc010gwp.2_Intron|LARGE_uc011ame.1_Missense_Mutation_p.V321L|LARGE_uc011amf.1_Missense_Mutation_p.V389L|LARGE_uc010gwq.1_RNA	NM_004737	NP_004728	O95461	LARGE_HUMAN	like-glycosyltransferase	389	Lumenal (Potential).				glycosphingolipid biosynthetic process|muscle cell homeostasis|N-acetylglucosamine metabolic process|protein glycosylation	integral to Golgi membrane	acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(1;0.219)				TTGTTCTTCACCCGGAGCTTC	0.557000													11	27					0.000151284	0.000163441	1	0
MYH9	4627	broad.mit.edu	37	22	36689419	36689419	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr22:36689419C>G	uc003apg.2	-	30	4282	c.4051G>C	c.(4051-4053)GCC>CCC	p.A1351P		NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	1351	Potential.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						TTGTGCTTGGCCTCCTCCTCC	0.652000			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				31	56					0	0	0	0
CYP2D7P1	1564	broad.mit.edu	37	22	42538867	42538867	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr22:42538867G>A	uc003bci.2	-	3	478	c.97C>T	c.(97-99)CGC>TGC	p.R33C	CYP2D7P1_uc003bcg.2_5'Flank|CYP2D7P1_uc003bch.2_5'Flank|CYP2D7P1_uc010gyv.2_Intron|CYP2D7P1_uc010gyw.2_RNA|CYP2D7P1_uc010gyx.1_Missense_Mutation_p.R33C	NR_002570				SubName: Full=Cytochrome P450 2D6;          EC=1.14.14.1;												0						GGCCCATAGCGCGACAGGAAC	0.687000													10	19					0	0	0	0
GADL1	339896	broad.mit.edu	37	3	30875411	30875411	+	Silent	SNP	G	T	T	rs139652704	byFrequency	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr3:30875411G>T	uc003cep.2	-	11	1031	c.984C>A	c.(982-984)GCC>GCA	p.A328A	GADL1_uc003ceq.1_Silent_p.A328A	NM_207359	NP_997242	Q6ZQY3	GADL1_HUMAN	glutamate decarboxylase-like 1	328					carboxylic acid metabolic process		carboxy-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	GTGGGTTCCAGGCCACAGAGT	0.448000													15	19					3.52763e-06	3.95225e-06	1	0
CCR2	729230	broad.mit.edu	37	3	46399710	46399710	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr3:46399710G>T	uc003cpn.3	+	2	1177	c.692G>T	c.(691-693)CGG>CTG	p.R231L	CCR2_uc003cpm.3_Missense_Mutation_p.R231L	NM_001123041	NP_001116513	P41597	CCR2_HUMAN	chemokine (C-C motif) receptor 2 isoform A	231	Cytoplasmic (Potential).				astrocyte cell migration|blood vessel remodeling|cellular defense response|chemokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response|interspecies interaction between organisms|JAK-STAT cascade|monocyte extravasation|negative regulation of adenylate cyclase activity|negative regulation of angiogenesis|negative regulation of eosinophil degranulation|negative regulation of type 2 immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of immune complex clearance by monocytes and macrophages|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-2 production|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|positive regulation of T cell extravasation|positive regulation of T-helper 1 type immune response|positive regulation of tumor necrosis factor biosynthetic process|regulation of vascular endothelial growth factor production|T-helper 17 cell chemotaxis	cytosol|dendrite|integral to plasma membrane|perikaryon|perinuclear region of cytoplasm|soluble fraction	C-C chemokine receptor activity|CCR2 chemokine receptor binding|protein homodimerization activity			lung(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0174)|Kidney(197;0.0206)		ACCCTGCTTCGGTGTCGAAAC	0.453000													103	142					1.26289e-39	1.9591e-39	1	0
RNF123	63891	broad.mit.edu	37	3	49738099	49738099	+	Silent	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr3:49738099C>T	uc003cxh.2	+	15	1320	c.1234C>T	c.(1234-1236)CTG>TTG	p.L412L	RNF123_uc010hky.1_Silent_p.L74L|RNF123_uc003cxi.2_RNA	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	412						cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		TATCGCCATCCTGAGGCATGA	0.607000													25	38					0	0	0	0
ACOX2	8309	broad.mit.edu	37	3	58520802	58520802	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr3:58520802C>T	uc003dkl.2	-	2	207	c.32G>A	c.(31-33)GGG>GAG	p.G11E		NM_003500	NP_003491	Q99424	ACOX2_HUMAN	acyl-Coenzyme A oxidase 2	11					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA 24-hydroxylase activity|acyl-CoA dehydrogenase activity|pristanoyl-CoA oxidase activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000194)|Kidney(10;0.00255)|KIRC - Kidney renal clear cell carcinoma(10;0.00268)|OV - Ovarian serous cystadenocarcinoma(275;0.156)		CCAGGTATCCCCCAATGACAC	0.572000													61	106					0	0	0	0
CNTN3	5067	broad.mit.edu	37	3	74350820	74350820	+	Silent	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr3:74350820C>A	uc003dpm.1	-	14	2003	c.1923G>T	c.(1921-1923)GTG>GTT	p.V641V		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	641	Fibronectin type-III 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		TTTGCCAACCCACGGAGAAAG	0.448000													25	19					4.26978e-12	5.64637e-12	1	0
SI	6476	broad.mit.edu	37	3	164758778	164758778	+	Silent	SNP	A	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr3:164758778A>G	uc003fei.2	-	18	2171	c.2109T>C	c.(2107-2109)TTT>TTC	p.F703F		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	703	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	GGGCTTTATAAAACAGAGTGT	0.348000										HNSCC(35;0.089)			27	74					0	0	0	0
SI	6476	broad.mit.edu	37	3	164781266	164781266	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr3:164781266A>G	uc003fei.2	-	8	933	c.871T>C	c.(871-873)TCA>CCA	p.S291P		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	291	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	ACACCGAATGACTTTCCAGAT	0.259000										HNSCC(35;0.089)			8	42					0	0	0	0
PIK3CA	5290	broad.mit.edu	37	3	178951964	178951964	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr3:178951964G>C	uc003fjk.2	+	21	3176	c.3019G>C	c.(3019-3021)GGC>CGC	p.G1007R		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	1007	PI3K/PI4K.		G -> R (in cancer).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.G1007R(6)|p.G1007D(2)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			AATGATGCTTGGCTCTGGAAT	0.378000		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			19	43					0	0	0	0
CCDC39	339829	broad.mit.edu	37	3	180349272	180349272	+	Silent	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr3:180349272G>T	uc010hxe.2	-	14	2098	c.1983C>A	c.(1981-1983)GCC>GCA	p.A661A	CCDC39_uc003fkn.2_RNA	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	661					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			TTACATAATAGGCCTGTGTTT	0.328000													11	40					1.58986e-06	1.79788e-06	1	0
BOD1L	259282	broad.mit.edu	37	4	13602128	13602128	+	Silent	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr4:13602128G>T	uc003gmz.1	-	10	6513	c.6396C>A	c.(6394-6396)GCC>GCA	p.A2132A	BOD1L_uc010idr.1_Silent_p.A1469A	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	2132							DNA binding			ovary(5)|breast(1)	6						CACTTCTGCTGGCAGTGAGTT	0.473000													14	35					1.5842e-08	1.91688e-08	1	0
ATP8A1	10396	broad.mit.edu	37	4	42588439	42588439	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr4:42588439C>A	uc003gwr.2	-	9	881	c.649G>T	c.(649-651)GGC>TGC	p.G217C	ATP8A1_uc003gws.2_Missense_Mutation_p.G217C|ATP8A1_uc011byz.1_Missense_Mutation_p.G217C	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	217	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	TCAATTCTGCCAGAAATCCTC	0.343000													14	35					0.00316338	0.00329973	1	0
LPHN3	23284	broad.mit.edu	37	4	62812713	62812713	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr4:62812713C>G	uc010ihh.2	+	13	2470	c.2297C>G	c.(2296-2298)ACG>AGG	p.T766R	LPHN3_uc003hcq.3_Missense_Mutation_p.T766R|LPHN3_uc003hct.2_Missense_Mutation_p.T159R	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	753	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						AAGTTGGGAACGGAAGCTTTG	0.403000													59	140					0	0	0	0
UGT2B10	7365	broad.mit.edu	37	4	69870669	69870669	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr4:69870669C>A	uc011cao.1	-	9	1517	c.1381G>T	c.(1381-1383)GCT>TCT	p.A461S	UGT2B10_uc011can.1_Missense_Mutation_p.A377S			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	498	Helical; (Potential).				lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						GCCACACAGGCCAGCAGGAAC	0.448000													11	135					3.07112e-06	3.45679e-06	1	0
PROL1	58503	broad.mit.edu	37	4	71275449	71275449	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr4:71275449T>G	uc003hfi.2	+	3	578	c.404T>G	c.(403-405)CTT>CGT	p.L135R		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	135	Pro-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				GCTATTTACCTTCCTATCTCT	0.433000													40	68					0	0	0	0
ADAMTS3	9508	broad.mit.edu	37	4	73175117	73175117	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr4:73175117G>A	uc003hgk.1	-	15	2213	c.2176C>T	c.(2176-2178)CTT>TTT	p.L726F	ADAMTS3_uc003hgl.2_Missense_Mutation_p.L67F	NM_014243	NP_055058	O15072	ATS3_HUMAN	ADAM metallopeptidase with thrombospondin type 1	726	Spacer.				collagen catabolic process|collagen fibril organization|proteolysis	proteinaceous extracellular matrix	heparin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2			Epithelial(6;4.97e-05)|OV - Ovarian serous cystadenocarcinoma(6;5.66e-05)|all cancers(17;0.000486)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			ATCTTACCAAGCTTCCTGGGA	0.408000													18	38					0	0	0	0
FGF5	2250	broad.mit.edu	37	4	81188293	81188293	+	Silent	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr4:81188293G>T	uc003hmd.2	+	1	552	c.315G>T	c.(313-315)CCG>CCT	p.P105P	FGF5_uc003hme.2_Silent_p.P105P	NM_004464	NP_004455	P12034	FGF5_HUMAN	fibroblast growth factor 5 isoform 1 precursor	105					cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	fibroblast growth factor receptor binding|growth factor activity			ovary(1)|breast(1)	2						AGATCTACCCGGATGGCAAAG	0.582000													29	58					3.73988e-18	5.51861e-18	1	0
DNAJB14	79982	broad.mit.edu	37	4	100830007	100830007	+	Silent	SNP	T	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr4:100830007T>C	uc003hvl.2	-	4	649	c.498A>G	c.(496-498)AAA>AAG	p.K166K	DNAJB14_uc003hvk.2_Silent_p.K81K|DNAJB14_uc010ili.2_Silent_p.K99K	NM_001031723	NP_001026893	Q8TBM8	DJB14_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 14	166	J.				protein folding	integral to membrane	heat shock protein binding|unfolded protein binding				0				OV - Ovarian serous cystadenocarcinoma(123;4.59e-09)		GGTCATACTGTTTTCGCTTTT	0.348000													21	40					0	0	0	0
ANK2	287	broad.mit.edu	37	4	114290872	114290872	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr4:114290872C>G	uc003ibe.3	+	43	11621	c.11521C>G	c.(11521-11523)CCG>GCG	p.P3841A	ANK2_uc003ibd.3_Missense_Mutation_p.P1747A|ANK2_uc003ibf.3_Missense_Mutation_p.P1756A|ANK2_uc011cgc.1_Missense_Mutation_p.P932A|ANK2_uc003ibg.3_Missense_Mutation_p.P740A|ANK2_uc003ibh.3_Missense_Mutation_p.P430A|ANK2_uc011cgd.1_Missense_Mutation_p.P1143A	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	3808					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		GGAGAGCTCTCCGCGGAAAAC	0.537000													24	40					0	0	0	0
TRPC3	7222	broad.mit.edu	37	4	122800901	122800901	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr4:122800901C>G	uc003ieg.2	-	12	2830	c.2756G>C	c.(2755-2757)AGA>ACA	p.R919T	TRPC3_uc010inr.2_Missense_Mutation_p.R791T|TRPC3_uc003ief.2_Missense_Mutation_p.R846T|TRPC3_uc011cgl.1_Missense_Mutation_p.R583T	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	834	Extracellular (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						TCATTCACATCTCAGCATGCT	0.363000													14	35					0	0	0	0
FAT4	79633	broad.mit.edu	37	4	126408505	126408505	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr4:126408505G>T	uc003ifj.3	+	16	12822	c.12822G>T	c.(12820-12822)AAG>AAT	p.K4274N	FAT4_uc011cgp.1_Missense_Mutation_p.K2515N|FAT4_uc003ifi.1_Missense_Mutation_p.K1752N	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4274	Laminin G-like 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TACAGATTAAGAATGGCAAAG	0.318000													7	17					0.00198382	0.00207829	1	0
PCDH10	57575	broad.mit.edu	37	4	134073619	134073619	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr4:134073619C>A	uc003iha.2	+	1	3150	c.2324C>A	c.(2323-2325)GCC>GAC	p.A775D	PCDH10_uc003igz.2_Missense_Mutation_p.A775D	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	775	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		GGCCGCCAAGCCCGGGCGCGC	0.592000													13	26					0.00010058	0.000109149	1	0
CTNND2	1501	broad.mit.edu	37	5	10992676	10992676	+	Silent	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr5:10992676G>T	uc003jfa.1	-	19	3343	c.3198C>A	c.(3196-3198)CCC>CCA	p.P1066P	CTNND2_uc010itt.2_Silent_p.P975P|CTNND2_uc011cmy.1_Silent_p.P729P|CTNND2_uc011cmz.1_Silent_p.P633P|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.P658P	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	1066					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						AGCGGTTGTTGGGAGACACGC	0.592000													14	57					3.27435e-08	3.92274e-08	1	0
CTNND2	1501	broad.mit.edu	37	5	11397162	11397162	+	Missense_Mutation	SNP	G	A	A	rs141302945		TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr5:11397162G>A	uc003jfa.1	-	6	738	c.593C>T	c.(592-594)ACG>ATG	p.T198M	CTNND2_uc010itt.2_Missense_Mutation_p.T107M|CTNND2_uc011cmy.1_Intron|CTNND2_uc011cmz.1_Translation_Start_Site|CTNND2_uc010itu.1_Intron	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	198					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						GCTCTGGCCCGTAGCTCGGGC	0.607000													41	106					0	0	0	0
NPR3	4883	broad.mit.edu	37	5	32783095	32783095	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr5:32783095C>G	uc003jhv.2	+	6	1605	c.1387C>G	c.(1387-1389)CGA>GGA	p.R463G	NPR3_uc010iuo.2_Missense_Mutation_p.R247G|NPR3_uc011cnz.1_Missense_Mutation_p.R247G|NPR3_uc003jhu.2_Missense_Mutation_p.R463G	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	463	Extracellular (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	AGATGAAAACCGAATTGTAGA	0.383000													6	19					0	0	0	0
RAI14	26064	broad.mit.edu	37	5	34823148	34823148	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr5:34823148C>T	uc003jir.2	+	15	1397	c.1201C>T	c.(1201-1203)CCT>TCT	p.P401S	RAI14_uc010iur.2_Missense_Mutation_p.P372S|RAI14_uc011coj.1_Missense_Mutation_p.P401S|RAI14_uc003jis.2_Missense_Mutation_p.P404S|RAI14_uc003jit.2_Missense_Mutation_p.P401S|RAI14_uc011cok.1_Missense_Mutation_p.P393S	NM_015577	NP_056392	Q9P0K7	RAI14_HUMAN	retinoic acid induced 14 isoform a	401						cell cortex|cytoskeleton	protein binding			ovary(1)	1	all_lung(31;0.000191)					CCTGGGAAAACCTGGTGAAAC	0.453000													25	53					0	0	0	0
GRIA1	2890	broad.mit.edu	37	5	153056596	153056596	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr5:153056596G>T	uc003lva.3	+	7	1269	c.904G>T	c.(904-906)GAG>TAG	p.E302*	GRIA1_uc003luy.3_Nonsense_Mutation_p.E302*|GRIA1_uc003luz.3_Nonsense_Mutation_p.E207*|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Nonsense_Mutation_p.E222*|GRIA1_uc011dcx.1_Nonsense_Mutation_p.E233*|GRIA1_uc011dcy.1_Nonsense_Mutation_p.E312*|GRIA1_uc011dcz.1_Nonsense_Mutation_p.E312*|GRIA1_uc010jia.1_Nonsense_Mutation_p.E282*	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	302	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GGTGATGGCTGAGGCTTTCCA	0.552000													17	23					1.67942e-08	2.02198e-08	1	0
GRIA1	2890	broad.mit.edu	37	5	153056599	153056599	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr5:153056599G>C	uc003lva.3	+	7	1272	c.907G>C	c.(907-909)GCT>CCT	p.A303P	GRIA1_uc003luy.3_Missense_Mutation_p.A303P|GRIA1_uc003luz.3_Missense_Mutation_p.A208P|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.A223P|GRIA1_uc011dcx.1_Missense_Mutation_p.A234P|GRIA1_uc011dcy.1_Missense_Mutation_p.A313P|GRIA1_uc011dcz.1_Missense_Mutation_p.A313P|GRIA1_uc010jia.1_Missense_Mutation_p.A283P	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	303	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GATGGCTGAGGCTTTCCAGAG	0.562000													15	21					0	0	0	0
RARS	5917	broad.mit.edu	37	5	167921571	167921571	+	Silent	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr5:167921571C>T	uc003lzx.2	+	5	536	c.495C>T	c.(493-495)CAC>CAT	p.H165H	RARS_uc011deo.1_5'UTR	NM_002887	NP_002878	P54136	SYRC_HUMAN	arginyl-tRNA synthetase	165					arginyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	arginine-tRNA ligase activity|ATP binding|protein binding			ovary(2)|skin(1)	3	Renal(175;0.000159)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0208)|all_neural(177;0.0227)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0693)|Epithelial(171;0.131)|OV - Ovarian serous cystadenocarcinoma(192;0.156)		TTAATGTCCACTTAAGAAAGG	0.358000													8	28					0	0	0	0
NSD1	64324	broad.mit.edu	37	5	176687055	176687055	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr5:176687055G>T	uc003mfr.3	+	14	5170	c.5032G>T	c.(5032-5034)GGG>TGG	p.G1678W	NSD1_uc003mft.3_Missense_Mutation_p.G1409W|NSD1_uc003mfs.1_Missense_Mutation_p.G1575W|NSD1_uc011dfx.1_Missense_Mutation_p.G1326W	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	1678					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		CCTGGCTGCTGGGTCAAAGAT	0.488000			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			13	30					1.49906e-05	1.65649e-05	1	0
GCNT2	2651	broad.mit.edu	37	6	10529410	10529410	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr6:10529410C>T	uc010joo.2	+	3	817	c.266C>T	c.(265-267)TCT>TTT	p.S89F	GCNT2_uc010jol.2_Intron|GCNT2_uc010jom.2_Intron|GCNT2_uc010jop.2_Intron|GCNT2_uc003mza.2_Intron|GCNT2_uc003mzc.3_Missense_Mutation_p.S88F|GCNT2_uc010jon.2_Missense_Mutation_p.S88F	NM_145649	NP_663624	Q8N0V5	GNT2A_HUMAN	glucosaminyl (N-acetyl) transferase 2,	89	Lumenal (Potential).					Golgi membrane|integral to membrane	N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(2)	2	Ovarian(93;0.107)|Breast(50;0.148)	all_hematologic(90;0.107)		KIRC - Kidney renal clear cell carcinoma(1;0.099)|Kidney(1;0.119)		GAAACACTCTCTGAAGAAGAG	0.428000													31	43					0	0	0	0
PEX6	5190	broad.mit.edu	37	6	42936617	42936617	+	Silent	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr6:42936617G>A	uc003otf.2	-	6	1567	c.1474C>T	c.(1474-1476)CTG>TTG	p.L492L	PEX6_uc010jya.2_RNA	NM_000287	NP_000278	Q13608	PEX6_HUMAN	peroxisomal biogenesis factor 6	492					protein import into peroxisome matrix, translocation|protein stabilization	cytosol|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)	1			all cancers(41;0.00235)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.0562)			CTCACCTTCAGTAAGTGGAGC	0.587000													29	15					0	0	0	0
COL12A1	1303	broad.mit.edu	37	6	75825753	75825753	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr6:75825753C>T	uc003phs.2	-	48	7706	c.7540G>A	c.(7540-7542)GAT>AAT	p.D2514N	COL12A1_uc003pht.2_Missense_Mutation_p.D1350N	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	2514	Nonhelical region (NC3).				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						GTGTAGCCATCCAAATAAATG	0.328000													4	30					0	0	0	0
ARMC2	84071	broad.mit.edu	37	6	109215694	109215694	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr6:109215694G>T	uc003pss.3	+	6	870	c.696G>T	c.(694-696)AGG>AGT	p.R232S	ARMC2_uc011eao.1_Missense_Mutation_p.R67S	NM_032131	NP_115507	Q8NEN0	ARMC2_HUMAN	armadillo repeat containing 2	232							binding				0		all_cancers(87;1.14e-07)|Acute lymphoblastic leukemia(125;2.3e-10)|all_hematologic(75;3.3e-08)|all_epithelial(87;0.000111)|Colorectal(196;0.03)|all_lung(197;0.11)		Epithelial(106;0.000197)|BRCA - Breast invasive adenocarcinoma(108;0.000236)|all cancers(137;0.000279)|OV - Ovarian serous cystadenocarcinoma(136;0.00434)		GACATGCGAGGGCCTCATCAT	0.488000													22	56					7.41877e-09	9.06739e-09	1	0
RFPL4B	442247	broad.mit.edu	37	6	112671295	112671295	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr6:112671295G>T	uc003pvx.1	+	3	697	c.385G>T	c.(385-387)GAT>TAT	p.D129Y		NM_001013734	NP_001013756	Q6ZWI9	RFPLB_HUMAN	ret finger protein-like 4B	129	B30.2/SPRY.						zinc ion binding				0		all_cancers(87;9.44e-05)|all_hematologic(75;0.000114)|all_epithelial(87;0.00265)|Colorectal(196;0.0209)		all cancers(137;0.0202)|OV - Ovarian serous cystadenocarcinoma(136;0.0477)|Epithelial(106;0.0646)|GBM - Glioblastoma multiforme(226;0.0866)|BRCA - Breast invasive adenocarcinoma(108;0.244)		TCTGACAAAAGATCCCAGGCT	0.557000													22	38					3.5997e-14	4.97787e-14	1	0
RFPL4B	442247	broad.mit.edu	37	6	112671407	112671407	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr6:112671407C>A	uc003pvx.1	+	3	809	c.497C>A	c.(496-498)CCG>CAG	p.P166Q		NM_001013734	NP_001013756	Q6ZWI9	RFPLB_HUMAN	ret finger protein-like 4B	166	B30.2/SPRY.						zinc ion binding				0		all_cancers(87;9.44e-05)|all_hematologic(75;0.000114)|all_epithelial(87;0.00265)|Colorectal(196;0.0209)		all cancers(137;0.0202)|OV - Ovarian serous cystadenocarcinoma(136;0.0477)|Epithelial(106;0.0646)|GBM - Glioblastoma multiforme(226;0.0866)|BRCA - Breast invasive adenocarcinoma(108;0.244)		TGCAAGGAGCCGGCTGACAGA	0.547000													30	67					7.01153e-11	9.02549e-11	1	0
LAMA2	3908	broad.mit.edu	37	6	129723502	129723502	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr6:129723502A>G	uc003qbn.2	+	39	5701	c.5596A>G	c.(5596-5598)ATG>GTG	p.M1866V	LAMA2_uc003qbo.2_Missense_Mutation_p.M1866V	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1866	Domain II and I.|Potential.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		ATTGCCACCTATGTCTGAGGA	0.423000													13	21					0	0	0	0
L3MBTL3	84456	broad.mit.edu	37	6	130378576	130378576	+	Silent	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr6:130378576G>T	uc003qbt.2	+	9	863	c.693G>T	c.(691-693)GCG>GCT	p.A231A	L3MBTL3_uc003qbu.2_Silent_p.A206A	NM_032438	NP_115814	Q96JM7	LMBL3_HUMAN	l(3)mbt-like 3 isoform a	231					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(5)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.0266)|OV - Ovarian serous cystadenocarcinoma(155;0.154)		GAAAGAAAGCGTGGTGCTGGG	0.522000													7	17					1.26484e-09	1.5697e-09	1	0
MAP3K5	4217	broad.mit.edu	37	6	136990474	136990474	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr6:136990474A>G	uc003qhc.2	-	8	1674	c.1313T>C	c.(1312-1314)CTC>CCC	p.L438P	MAP3K5_uc011edk.1_Missense_Mutation_p.L283P|MAP3K5_uc010kgw.1_Missense_Mutation_p.L438P	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	438					activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		TGCCAGGAGGAGGACCGCATA	0.388000													3	96					0	0	0	0
GPER	2852	broad.mit.edu	37	7	1131629	1131629	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr7:1131629G>A	uc010ksd.1	+	2	654	c.265G>A	c.(265-267)GAG>AAG	p.E89K	C7orf50_uc003sju.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron|GPER_uc003sjz.1_Missense_Mutation_p.E89K|GPER_uc003ska.1_Missense_Mutation_p.E89K|GPER_uc003skb.2_Missense_Mutation_p.E89K	NM_001098201	NP_001091671	Q99527	GPER_HUMAN	G protein-coupled receptor 30	89	Cytoplasmic (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;2.32e-16)		CAGCTTCCGCGAGAAGATGAC	0.582000													15	51					0	0	0	0
NPVF	64111	broad.mit.edu	37	7	25266438	25266438	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr7:25266438T>C	uc003sxo.2	-	2	393	c.346A>G	c.(346-348)ATG>GTG	p.M116V		NM_022150	NP_071433	Q9HCQ7	RFRP_HUMAN	neuropeptide VF precursor	116					neuropeptide signaling pathway	extracellular region|membrane	G-protein coupled receptor activity			ovary(1)	1						CTCACCTCCATATTTCTTCCA	0.493000													48	119					0	0	0	0
PDE1C	5137	broad.mit.edu	37	7	32209516	32209516	+	Silent	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr7:32209516C>A	uc003tco.1	-	3	783	c.189G>T	c.(187-189)GGG>GGT	p.G63G		NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	Error:Variant_position_missing_in_Q14123_after_alignment					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			CCTTGACATTCCCTGTGAGCC	0.517000													25	105					3.6726e-16	5.2903e-16	1	0
AMPH	273	broad.mit.edu	37	7	38433765	38433765	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr7:38433765G>A	uc003tgu.2	-	18	1517	c.1448C>T	c.(1447-1449)GCA>GTA	p.A483V	AMPH_uc003tgv.2_Missense_Mutation_p.A441V|AMPH_uc003tgt.2_Missense_Mutation_p.A368V|AMPH_uc003tgw.1_Missense_Mutation_p.A506V|AMPH_uc010kxl.1_RNA	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	483					endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						CCCCTCAGCTGCTGACACCAA	0.587000													55	66					0	0	0	0
IGFBP1	3484	broad.mit.edu	37	7	45928583	45928583	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr7:45928583C>A	uc003tnp.2	+	1	625	c.332C>A	c.(331-333)TCC>TAC	p.S111Y	IGFBP1_uc003tno.3_Missense_Mutation_p.S111Y|IGFBP1_uc010kyn.2_Missense_Mutation_p.S111Y	NM_000596	NP_000587	P08833	IBP1_HUMAN	insulin-like growth factor binding protein 1	111						extracellular space	insulin-like growth factor binding			lung(1)	1						TCTGACGCCTCCGCTCCCCAT	0.478000													4	4					0.00909568	0.00936662	1	0
INTS4L1	285905	broad.mit.edu	37	7	64639752	64639752	+	RNA	SNP	A	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr7:64639752A>T	uc003ttw.2	+	5		c.635A>T				NR_027393				Homo sapiens cDNA FLJ25037 fis, clone CBL03066.												0						TTGATTTCCTAGTTGACATGT	0.443000													6	10					0	0	0	0
GTF2IRD1	9569	broad.mit.edu	37	7	74015431	74015431	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr7:74015431C>G	uc003uaq.2	+	26	3128	c.2735C>G	c.(2734-2736)TCC>TGC	p.S912C	GTF2IRD1_uc010lbq.2_Missense_Mutation_p.S929C|GTF2IRD1_uc003uap.2_Missense_Mutation_p.S897C|GTF2IRD1_uc003uar.1_Missense_Mutation_p.S897C	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	912	Ser-rich.			Missing: Cytoplasmic localization.		nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						AATTCCGTctcctcttcctcc	0.438000													23	27					0	0	0	0
PON1	5444	broad.mit.edu	37	7	94946068	94946068	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr7:94946068T>G	uc003uns.2	-	3	276	c.179A>C	c.(178-180)AAT>ACT	p.N60T	PON1_uc011kih.1_Missense_Mutation_p.N60T	NM_000446	NP_000437	P27169	PON1_HUMAN	paraoxonase 1 precursor	60					aromatic compound catabolic process|carboxylic acid catabolic process|organophosphate catabolic process|phosphatidylcholine metabolic process|positive regulation of binding|positive regulation of cholesterol efflux|positive regulation of transporter activity|response to external stimulus	spherical high-density lipoprotein particle	aryldialkylphosphatase activity|arylesterase activity|calcium ion binding|phospholipid binding|protein homodimerization activity			pancreas(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0031)		Atorvastatin(DB01076)|Cefazolin(DB01327)	AGCCAGTCCATTAGGCAGTAT	0.398000													46	323					0	0	0	0
TECPR1	25851	broad.mit.edu	37	7	97872809	97872809	+	Silent	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr7:97872809C>A	uc003upg.2	-	6	832	c.627G>T	c.(625-627)CTG>CTT	p.L209L	TECPR1_uc003uph.1_Silent_p.L130L	NM_015395	NP_056210	Q7Z6L1	TCPR1_HUMAN	tectonin beta-propeller repeat containing 1	209	TECPR 1.					integral to membrane	protein binding			pancreas(1)	1						CCCACACTGACAGGCGGCCCA	0.647000													84	47					1.51188e-25	2.33041e-25	1	0
MUC17	140453	broad.mit.edu	37	7	100685833	100685833	+	Silent	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr7:100685833C>T	uc003uxp.1	+	3	11189	c.11136C>T	c.(11134-11136)AGC>AGT	p.S3712S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3712	Extracellular (Potential).|59.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CTGAGGGTAGCACCCTTTCAA	0.507000													441	189					0	0	0	0
RELN	5649	broad.mit.edu	37	7	103216153	103216153	+	Splice_Site	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr7:103216153C>A	uc003vca.2	-	29	4306	c.4146_splice	c.e29-1	p.S1382_splice	RELN_uc010liz.2_Splice_Site_p.S1382_splice	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a						axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TCTGGTCTTGCTGTTGGGAAA	0.403000													16	165					5.01169e-05	5.48792e-05	1	0
LAMB1	3912	broad.mit.edu	37	7	107580499	107580499	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr7:107580499G>C	uc003vew.2	-	25	4031	c.3696C>G	c.(3694-3696)GAC>GAG	p.D1232E	LAMB1_uc003vev.2_Missense_Mutation_p.D1256E	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	1232	Potential.|Domain II.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GCGCCAGGATGTCTTTTATCT	0.498000													36	37					0	0	0	0
CADPS2	93664	broad.mit.edu	37	7	122028668	122028668	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr7:122028668C>T	uc010lkp.2	-	22	3296	c.3133G>A	c.(3133-3135)GCC>ACC	p.A1045T	CADPS2_uc011knx.1_Missense_Mutation_p.A420T|CADPS2_uc003vkg.3_Missense_Mutation_p.A699T|CADPS2_uc010lkq.2_Missense_Mutation_p.A999T	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	1045	Interaction with DRD2.|MHD1.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						ATATCACTGGCCATTAGTTTA	0.408000													6	7					0	0	0	0
OR6V1	346517	broad.mit.edu	37	7	142750110	142750110	+	Silent	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr7:142750110C>A	uc011ksv.1	+	1	673	c.673C>A	c.(673-675)CGG>AGG	p.R225R		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					CACTGTGCTGCGGATCCCCTC	0.532000													55	63					2.12129e-23	3.22862e-23	1	0
CEBPD	1052	broad.mit.edu	37	8	48649939	48649939	+	Silent	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr8:48649939C>A	uc003xqh.1	-	1	788	c.744G>T	c.(742-744)CGG>CGT	p.R248R	KIAA0146_uc003xqg.1_Intron	NM_005195	NP_005186	P49716	CEBPD_HUMAN	CCAAT/enhancer binding protein delta	248	Leucine-zipper.				transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(86;0.0782)|Lung NSC(58;0.00363)|all_epithelial(80;0.0042)|all_lung(54;0.00914)				TGAAGAACTGCCGGAGGCCGG	0.687000													11	30					1.58986e-06	1.79788e-06	1	0
ARFGEF1	10565	broad.mit.edu	37	8	68184172	68184172	+	Splice_Site	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr8:68184172C>A	uc003xxo.1	-	10	1728	c.1338_splice	c.e10-1	p.K446_splice		NM_006421	NP_006412	Q9Y6D6	BIG1_HUMAN	brefeldin A-inhibited guanine						exocytosis|regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity|myosin binding			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|kidney(1)	8	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.0043)|OV - Ovarian serous cystadenocarcinoma(28;0.00578)|all cancers(69;0.0173)|BRCA - Breast invasive adenocarcinoma(89;0.206)			TTCATGAGACCTAAAATGTAA	0.318000													12	13					6.40141e-05	6.97811e-05	1	0
INTS8	55656	broad.mit.edu	37	8	95863869	95863869	+	Silent	SNP	A	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr8:95863869A>G	uc003yhb.2	+	13	1722	c.1596A>G	c.(1594-1596)TTA>TTG	p.L532L	INTS8_uc003yha.1_Silent_p.L532L|INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_Silent_p.L359L	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	532					snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					TAATTGAATTACATGGTATGA	0.363000													19	45					0	0	0	0
RIMS2	9699	broad.mit.edu	37	8	105026790	105026790	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr8:105026790G>T	uc003yls.2	+	17	2742	c.2501G>T	c.(2500-2502)GGA>GTA	p.G834V	RIMS2_uc003ylp.2_Missense_Mutation_p.G1094V|RIMS2_uc003ylw.2_Missense_Mutation_p.G908V|RIMS2_uc003ylq.2_Missense_Mutation_p.G908V|RIMS2_uc003ylr.2_Missense_Mutation_p.G933V	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1156					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			CCAGTCGCAGGACGAAGGGGC	0.438000										HNSCC(12;0.0054)			21	26					4.63292e-17	6.79495e-17	1	0
COL22A1	169044	broad.mit.edu	37	8	139890335	139890335	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr8:139890335G>A	uc003yvd.2	-	3	763	c.316C>T	c.(316-318)CGG>TGG	p.R106W		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	106	VWFA.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			GCGAGACGCCGGGCAGCCGCC	0.716000										HNSCC(7;0.00092)			16	4					0	0	0	0
DMRT3	58524	broad.mit.edu	37	9	990980	990980	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr9:990980C>G	uc003zgw.1	+	2	1432	c.1394C>G	c.(1393-1395)TCT>TGT	p.S465C		NM_021240	NP_067063	Q9NQL9	DMRT3_HUMAN	doublesex and mab-3 related transcription factor	465					cell differentiation|multicellular organismal development|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(2)|central_nervous_system(1)	3		all_lung(10;1.39e-08)|Lung NSC(10;1.42e-08)		Lung(218;0.0196)		TCCTCAGACTCTAGAACACTC	0.512000													32	39					0	0	0	0
TRPM6	140803	broad.mit.edu	37	9	77403655	77403655	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr9:77403655C>T	uc004ajl.1	-	20	2780	c.2542G>A	c.(2542-2544)GCG>ACG	p.A848T	TRPM6_uc004ajk.1_Missense_Mutation_p.A843T|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajm.1_Intron	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	848	Helical; (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						GCCAAATACGCCATCTGTGAG	0.532000													6	30					0	0	0	0
FGD3	89846	broad.mit.edu	37	9	95795123	95795123	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr9:95795123C>A	uc004asw.2	+	16	2381	c.1753C>A	c.(1753-1755)CTG>ATG	p.L585M	FGD3_uc004asx.2_Missense_Mutation_p.L585M|FGD3_uc004asz.2_Missense_Mutation_p.L585M|FGD3_uc011luc.1_Missense_Mutation_p.L188M	NM_001083536	NP_001077005	Q5JSP0	FGD3_HUMAN	FYVE, RhoGEF and PH domain containing 3	585	FYVE-type.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(1)|breast(1)	2						AGATTGTTTCCTGACACAGCC	0.637000													42	112					2.45108e-15	3.44861e-15	1	0
TBC1D2	55357	broad.mit.edu	37	9	100963875	100963875	+	Missense_Mutation	SNP	G	T	T	rs148540803	by1000genomes	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr9:100963875G>T	uc011lvb.1	-	11	2523	c.2343C>A	c.(2341-2343)CAC>CAA	p.H781Q	TBC1D2_uc004ayp.2_Missense_Mutation_p.H321Q|TBC1D2_uc004ayq.2_Missense_Mutation_p.H781Q|TBC1D2_uc004ayr.2_Missense_Mutation_p.H563Q|TBC1D2_uc004ayo.3_Missense_Mutation_p.H781Q	NM_018421	NP_060891	Q9BYX2	TBD2A_HUMAN	TBC1 domain family, member 2	781	Rab-GAP TBC.					cell junction|cytoplasmic membrane-bounded vesicle|nucleus	Rab GTPase activator activity			ovary(3)	3		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.55e-37)		GATCCACGTGGTGCTGCCCCA	0.607000													19	54					1.96292e-10	2.4741e-10	1	0
GRIN3A	116443	broad.mit.edu	37	9	104499694	104499694	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr9:104499694C>T	uc004bbp.1	-	1	1169	c.568G>A	c.(568-570)GTG>ATG	p.V190M	GRIN3A_uc004bbq.1_Missense_Mutation_p.V190M	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	190	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	ACCCCTTGCACCACCACGGTA	0.587000													17	45					0	0	0	0
FKTN	2218	broad.mit.edu	37	9	108366711	108366711	+	Silent	SNP	T	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr9:108366711T>A	uc004bcr.2	+	6	801	c.585T>A	c.(583-585)ATT>ATA	p.I195I	FKTN_uc011lvx.1_Silent_p.I195I|FKTN_uc004bcs.2_Silent_p.I195I|FKTN_uc011lvy.1_Silent_p.I195I|FKTN_uc010mtm.2_Silent_p.I63I	NM_001079802	NP_001073270	O75072	FKTN_HUMAN	fukutin	195	Lumenal (Potential).				muscle organ development|negative regulation of cell proliferation|negative regulation of JNK cascade|nervous system development|regulation of protein glycosylation	cis-Golgi network|endoplasmic reticulum|extracellular space|Golgi membrane|integral to membrane|nucleus	transferase activity			breast(2)|ovary(1)	3						AAGAACACATTGACAGGAAAT	0.443000													16	34					0	0	0	0
SVEP1	79987	broad.mit.edu	37	9	113169643	113169643	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr9:113169643C>A	uc010mtz.2	-	38	8574	c.8237G>T	c.(8236-8238)GGA>GTA	p.G2746V	SVEP1_uc010mty.2_Missense_Mutation_p.G672V	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2746	Sushi 22.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TAGAATGTGTCCAGGTTTACA	0.443000													28	65					1.26454e-06	1.45033e-06	1	0
FCN2	2220	broad.mit.edu	37	9	137772670	137772670	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr9:137772670G>T	uc004cfg.1	+	1	13	c.3G>T	c.(1-3)ATG>ATT	p.M1I	FCN2_uc004cfh.1_Missense_Mutation_p.M1I	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	1					complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		CAGAAGAGATGGAGCTGGACA	0.592000													14	29					6.31663e-08	7.53017e-08	1	0
PNPLA7	375775	broad.mit.edu	37	9	140438232	140438232	+	Silent	SNP	A	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr9:140438232A>C	uc004cnf.2	-	4	571	c.234T>G	c.(232-234)ACT>ACG	p.T78T	PNPLA7_uc010ncj.1_Silent_p.T103T	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	78					lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		GGGGCAGGGCAGTGTTCTCCA	0.622000													21	64					0	0	0	0
TSIX	9383	broad.mit.edu	37	X	73048907	73048907	+	RNA	SNP	T	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chrX:73048907T>G	uc004ebn.2	+	1		c.36868T>G			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						ACTTACTTCATTCAGCTATCC	0.458000													29	9					0	0	0	0
BRWD3	254065	broad.mit.edu	37	X	79999656	79999656	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chrX:79999656C>A	uc004edt.2	-	8	951	c.688G>T	c.(688-690)GTT>TTT	p.V230F	BRWD3_uc004edo.2_5'UTR|BRWD3_uc004edp.2_Missense_Mutation_p.V59F|BRWD3_uc004edq.2_5'UTR|BRWD3_uc010nmj.1_5'UTR|BRWD3_uc004edr.2_5'UTR|BRWD3_uc004eds.2_5'UTR|BRWD3_uc004edu.2_5'UTR|BRWD3_uc004edv.2_5'UTR|BRWD3_uc004edw.2_5'UTR|BRWD3_uc004edx.2_5'UTR|BRWD3_uc004edy.2_5'UTR|BRWD3_uc004edz.2_5'UTR|BRWD3_uc004eea.2_5'UTR|BRWD3_uc004eeb.2_Intron	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	230	WD 3.									ovary(4)	4						TCATAGTTAACAGCCATGTCA	0.448000													23	17					6.36457e-07	7.33441e-07	1	0
POU3F4	5456	broad.mit.edu	37	X	82764275	82764275	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chrX:82764275C>T	uc004eeg.2	+	1	1007	c.943C>T	c.(943-945)CTC>TTC	p.L315F		NM_000307	NP_000298	P49335	PO3F4_HUMAN	POU domain, class 3, transcription factor 4	315	Homeobox.				sensory perception of sound	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGCAGACAGCCTCCAGTTGGA	0.557000													11	9					0	0	0	0
DCX	1641	broad.mit.edu	37	X	110653366	110653366	+	Silent	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chrX:110653366C>G	uc004epd.2	-	2	676	c.504G>C	c.(502-504)CTG>CTC	p.L168L	DCX_uc011msv.1_Silent_p.L168L|DCX_uc004epe.2_Silent_p.L87L|DCX_uc004epf.2_Silent_p.L87L|DCX_uc004epg.2_Silent_p.L87L	NM_000555	NP_000546	O43602	DCX_HUMAN	doublecortin isoform a	168	Doublecortin 1.				axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding			central_nervous_system(2)|lung(1)|skin(1)	4						GAGATCGCGTCAGGTCAGCCA	0.527000													51	27					0	0	0	0
FAM70A	55026	broad.mit.edu	37	X	119410744	119410744	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chrX:119410744T>C	uc004eso.3	-	8	970	c.743A>G	c.(742-744)GAC>GGC	p.D248G	FAM70A_uc004esp.3_Missense_Mutation_p.D224G|FAM70A_uc010nqo.2_Intron	NM_017938	NP_060408	Q5JRV8	FA70A_HUMAN	hypothetical protein LOC55026 isoform 1	248						integral to membrane				lung(1)|breast(1)	2						CCTTACCATGTCCTTAAAGCC	0.507000													26	10					0	0	0	0
ODZ1	10178	broad.mit.edu	37	X	123515059	123515059	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chrX:123515059T>C	uc004euj.2	-	31	7569	c.7505A>G	c.(7504-7506)AAT>AGT	p.N2502S	ODZ1_uc011muj.1_Missense_Mutation_p.N2508S|ODZ1_uc010nqy.2_Missense_Mutation_p.N2509S	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	2502	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CCGTCCATCATTGTATCGGGG	0.463000													60	32					0	0	0	0
ATP11C	286410	broad.mit.edu	37	X	138899028	138899028	+	Silent	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chrX:138899028G>A	uc004faz.2	-	4	420	c.321C>T	c.(319-321)ATC>ATT	p.I107I	ATP11C_uc004fba.2_Silent_p.I107I	NM_173694	NP_775965	Q8NB49	AT11C_HUMAN	ATPase, class VI, type 11C isoform a	107	Helical; (Potential).				ATP biosynthetic process	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(5)|large_intestine(3)	8	Acute lymphoblastic leukemia(192;0.000127)					TTACCTGCTTGATGGCTGTAA	0.368000													17	21					0	0	0	0
SPANXN1	494118	broad.mit.edu	37	X	144329127	144329127	+	Silent	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chrX:144329127C>T	uc004fcb.2	+	1	21	c.21C>T	c.(19-21)AGC>AGT	p.S7S		NM_001009614	NP_001009614	Q5VSR9	SPXN1_HUMAN	SPANX-N1 protein	7											0	Acute lymphoblastic leukemia(192;6.56e-05)					CCACTTCAAGCATCAATGGGG	0.363000													46	41					0	0	0	0
CHD5	26038	broad.mit.edu	37	1	6172998	6172998	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr1:6172998C>A	uc001amb.1	-	34	5073	c.4973G>T	c.(4972-4974)AGC>ATC	p.S1658I	CHD5_uc001alz.1_Missense_Mutation_p.S515I|CHD5_uc001ama.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1658					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		GTCCCCTCTGCTGTGGATCAA	0.592000													32	65					1.45844e-13	1.96392e-13	1	0
PTCHD2	57540	broad.mit.edu	37	1	11562935	11562935	+	Silent	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr1:11562935C>T	uc001ash.3	+	3	1435	c.1297C>T	c.(1297-1299)CTG>TTG	p.L433L	PTCHD2_uc001asi.1_Silent_p.L433L	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	433	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		CGTGGCCATGCTGGCCAAGCA	0.522000													3	54					0	0	0	0
C1orf64	149563	broad.mit.edu	37	1	16332707	16332707	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr1:16332707C>T	uc001axn.2	+	2	444	c.376C>T	c.(376-378)CCG>TCG	p.P126S		NM_178840	NP_849162	Q8NEQ6	CA064_HUMAN	hypothetical protein LOC149563	126										breast(2)	2		Colorectal(325;0.000435)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;3.25e-07)|COAD - Colon adenocarcinoma(227;2.08e-05)|BRCA - Breast invasive adenocarcinoma(304;9.19e-05)|Kidney(64;0.000165)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.0114)|READ - Rectum adenocarcinoma(331;0.0649)		CCCAGTCAGCCCGCTCTGCCC	0.647000													20	35					0	0	0	0
MST1P2	11209	broad.mit.edu	37	1	16974243	16974243	+	RNA	SNP	G	C	C	rs142213352	by1000genomes	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr1:16974243G>C	uc009vow.2	+	5		c.1053G>C			MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_Intron|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_Intron|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_Intron|MST1P2_uc001azm.3_Intron					Homo sapiens cDNA FLJ53774 complete cds, moderately similar to Hepatocyte growth factor-like protein precursor.												0						GATCTCAGCTGTCGCTCGGGG	0.652000													3	27					0	0	0	0
MST1P2	11209	broad.mit.edu	37	1	16974935	16974935	+	RNA	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr1:16974935C>A	uc010och.1	+	7		c.1395C>A			MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						AGGGCCCTAACCCTGGGGCGG	0.657000													15	50					1.15088e-07	1.33705e-07	1	0
EPHA8	2046	broad.mit.edu	37	1	22927549	22927549	+	Silent	SNP	T	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr1:22927549T>C	uc001bfx.1	+	15	2822	c.2697T>C	c.(2695-2697)CCT>CCC	p.P899P		NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	899	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		TCCGCAGCCCTGAGAGTCTCA	0.647000													3	87					0	0	0	0
NCDN	23154	broad.mit.edu	37	1	36028893	36028893	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr1:36028893G>C	uc001bza.2	+	6	1603	c.1476G>C	c.(1474-1476)AAG>AAC	p.K492N	NCDN_uc001bzb.2_Missense_Mutation_p.K492N|NCDN_uc001bzc.2_Missense_Mutation_p.K475N	NM_001014839	NP_001014839	Q9UBB6	NCDN_HUMAN	neurochondrin isoform 1	492					neuron projection development	cytosol|dendrite|neuronal cell body				large_intestine(2)|pancreas(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TTCTGTGCAAGTATTTCCTGC	0.622000													31	81					0	0	0	0
KIAA0754	643314	broad.mit.edu	37	1	39879476	39879476	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr1:39879476C>G	uc009vvt.1	+	1	4301	c.3539C>G	c.(3538-3540)GCA>GGA	p.A1180G	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc010oiu.1_Intron	NM_015038	NP_055853	O94854	K0754_HUMAN	hypothetical protein LOC643314	1044	Ala-rich.										0	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CCCACCCCAGCAGAATCTGCC	0.662000													16	38					0	0	0	0
C8A	731	broad.mit.edu	37	1	57341807	57341807	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr1:57341807G>A	uc001cyo.2	+	4	521	c.389G>A	c.(388-390)TGT>TAT	p.C130Y		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	130	LDL-receptor class A.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						GAGGACGACTGTGAAGATGTC	0.542000													16	38					0	0	0	0
ST6GALNAC3	256435	broad.mit.edu	37	1	76779616	76779616	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr1:76779616C>A	uc001dhh.2	+	2	308	c.145C>A	c.(145-147)CCA>ACA	p.P49T	ST6GALNAC3_uc001dhg.3_Missense_Mutation_p.P49T|ST6GALNAC3_uc010orh.1_Intron	NM_152996	NP_694541	Q8NDV1	SIA7C_HUMAN	sialyltransferase 7C isoform 1	49	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			ovary(3)|skin(2)	5						AAAGTGGATACCATTCTCCTA	0.453000													32	62					2.08457e-15	2.90613e-15	1	0
SYDE2	84144	broad.mit.edu	37	1	85647842	85647842	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr1:85647842C>T	uc009wcm.2	-	3	2532	c.2483G>A	c.(2482-2484)GGA>GAA	p.G828E	SYDE2_uc001dku.3_Missense_Mutation_p.G828E	NM_032184	NP_115560	Q5VT97	SYDE2_HUMAN	synapse defective 1, Rho GTPase, homolog 2	828	Rho-GAP.				activation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	Rho GTPase activator activity			ovary(1)|central_nervous_system(1)	2				all cancers(265;0.0126)|Epithelial(280;0.0336)		CACCATCAGTCCTATATTTTC	0.348000													3	16					0	0	0	0
COL11A1	1301	broad.mit.edu	37	1	103354187	103354187	+	Splice_Site	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr1:103354187C>A	uc001dul.2	-	62	4873	c.4555_splice	c.e62-1	p.G1519_splice	COL11A1_uc001duk.2_Splice_Site_p.G715_splice|COL11A1_uc001dum.2_Splice_Site_p.G1531_splice|COL11A1_uc001dun.2_Splice_Site_p.G1480_splice|COL11A1_uc009weh.2_Splice_Site_p.G1403_splice	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A						collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		CAGCGGGTCCCTGTTAGAAAG	0.423000													14	41					1.3612e-06	1.52893e-06	1	0
COL11A1	1301	broad.mit.edu	37	1	103471395	103471395	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr1:103471395C>A	uc001dul.2	-	18	2162	c.1844G>T	c.(1843-1845)AGG>ATG	p.R615M	COL11A1_uc001duk.2_Translation_Start_Site|COL11A1_uc001dum.2_Missense_Mutation_p.R627M|COL11A1_uc001dun.2_Missense_Mutation_p.R576M|COL11A1_uc009weh.2_Missense_Mutation_p.R499M	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	615	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		GTATCTTACCCTGTGACCTTT	0.289000													26	64					2.12542e-12	2.79846e-12	1	0
KCNT2	343450	broad.mit.edu	37	1	196295982	196295982	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr1:196295982T>C	uc001gtd.1	-	19	2201	c.2141A>G	c.(2140-2142)TAT>TGT	p.Y714C	KCNT2_uc009wyt.1_Intron|KCNT2_uc001gte.1_Missense_Mutation_p.Y664C|KCNT2_uc001gtf.1_Missense_Mutation_p.Y714C|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.Y714C|KCNT2_uc001gth.1_Missense_Mutation_p.Y235C	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	714	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						TTTGAATCCATAGGCTTTTGC	0.318000													22	55					0	0	0	0
TGFB2	7042	broad.mit.edu	37	1	218614596	218614596	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr1:218614596C>A	uc001hlm.2	+	7	1790	c.1137C>A	c.(1135-1137)TGC>TGA	p.C379*	TGFB2_uc001hln.2_Nonsense_Mutation_p.C407*|TGFB2_uc010pue.1_RNA|TGFB2_uc001hlo.2_RNA	NM_003238	NP_003229	P61812	TGFB2_HUMAN	transforming growth factor, beta 2 isoform 2	379					activation of protein kinase activity|angiogenesis|cardiac epithelial to mesenchymal transition|cardiac muscle cell proliferation|cardioblast differentiation|catagen|cell cycle arrest|cell death|cell growth|cell-cell junction organization|cell-cell signaling|collagen fibril organization|dopamine biosynthetic process|embryonic digestive tract development|eye development|glial cell migration|hair follicle morphogenesis|hemopoiesis|menstrual cycle phase|negative regulation of alkaline phosphatase activity|negative regulation of cell growth|negative regulation of epithelial cell proliferation|negative regulation of immune response|negative regulation of macrophage cytokine production|neuron development|neutrophil chemotaxis|odontogenesis|pathway-restricted SMAD protein phosphorylation|platelet activation|platelet degranulation|positive regulation of cardioblast differentiation|positive regulation of catagen|positive regulation of cell adhesion mediated by integrin|positive regulation of cell cycle|positive regulation of cell division|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of epithelial cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of heart contraction|positive regulation of immune response|positive regulation of integrin biosynthetic process|positive regulation of neuron apoptosis|positive regulation of ossification|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein secretion|positive regulation of stress-activated MAPK cascade|regulation of transforming growth factor-beta2 production|response to hypoxia|response to progesterone stimulus|salivary gland morphogenesis|SMAD protein import into nucleus|somatic stem cell division|transforming growth factor beta receptor signaling pathway	axon|extracellular matrix|extracellular space|neuronal cell body|platelet alpha granule lumen	beta-amyloid binding|cytokine activity|growth factor activity|protein heterodimerization activity|protein homodimerization activity|receptor signaling protein serine/threonine kinase activity|type II transforming growth factor beta receptor binding				0				all cancers(67;0.0459)|OV - Ovarian serous cystadenocarcinoma(81;0.049)|GBM - Glioblastoma multiforme(131;0.0776)		CTTCTCCTTGCTGCGTGTCCC	0.403000													28	59					4.87955e-14	6.60831e-14	1	0
RYR2	6262	broad.mit.edu	37	1	237838057	237838057	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr1:237838057C>A	uc001hyl.1	+	60	8861	c.8741C>A	c.(8740-8742)ACG>AAG	p.T2914K	RYR2_uc010pxz.1_5'UTR	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2914	Modulator (Potential).|Cytoplasmic (By similarity).|4 X approximate repeats.|4.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GAACTGGACACGCCTTCTATT	0.408000													5	16					0.00116845	0.00123076	1	0
LOC100130331	100130331	broad.mit.edu	37	1	238090369	238090369	+	RNA	SNP	C	G	G	rs41308192	by1000genomes	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr1:238090369C>G	uc010pyc.1	+	12		c.1875C>G				NR_027247				Homo sapiens mRNA; cDNA DKFZp434B2115 (from clone DKFZp434B2115).												0						CCAACTGGGACGACATGGAGA	0.607000													13	38					0	0	0	0
C10orf47	254427	broad.mit.edu	37	10	11911812	11911812	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr10:11911812G>T	uc001ikx.2	+	4	869	c.715G>T	c.(715-717)GGC>TGC	p.G239C	uc001iky.1_Intron	NM_153256	NP_694988	Q86WR7	CJ047_HUMAN	hypothetical protein LOC254427	239	Pro-rich.									central_nervous_system(1)	1						TGGAGACCCTGGCCCGGGGCC	0.766000													9	14					3.09899e-07	3.54811e-07	1	0
HSPA14	51182	broad.mit.edu	37	10	14894529	14894529	+	Nonsense_Mutation	SNP	A	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr10:14894529A>T	uc001inf.2	+	8	874	c.733A>T	c.(733-735)AGA>TGA	p.R245*		NM_016299	NP_057383	Q0VDF9	HSP7E_HUMAN	heat shock 70kDa protein 14 isoform 1	245					'de novo' cotranslational protein folding	cytosol	ATP binding|protein binding			ovary(2)|breast(2)|lung(1)	5						TGAGTTCCAAAGGTGAGTGTT	0.358000													30	61					0	0	0	0
SLC39A12	221074	broad.mit.edu	37	10	18331685	18331685	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr10:18331685C>A	uc001ipo.2	+	13	2272	c.1999C>A	c.(1999-2001)CTG>ATG	p.L667M	SLC39A12_uc001ipn.2_Missense_Mutation_p.L630M|SLC39A12_uc001ipp.2_Missense_Mutation_p.L666M|SLC39A12_uc010qck.1_Missense_Mutation_p.L533M	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	667	Helical; (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						GATGTTTCTCCTGCAAAACTT	0.353000													16	61					6.94344e-10	8.57081e-10	1	0
RASGEF1A	221002	broad.mit.edu	37	10	43691705	43691705	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr10:43691705A>T	uc001jap.1	-	13	1514	c.1433T>A	c.(1432-1434)CTG>CAG	p.L478Q	RASGEF1A_uc001jao.1_Missense_Mutation_p.L486Q	NM_145313	NP_660356	Q8N9B8	RGF1A_HUMAN	RasGEF domain family, member 1A	478					cell migration|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	Ras guanyl-nucleotide exchange factor activity				0						GGCTCTGTTCAGAAGGGTGGT	0.597000													27	66					0	0	0	0
RHOBTB1	9886	broad.mit.edu	37	10	62648784	62648784	+	Silent	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr10:62648784C>T	uc001jli.2	-	7	1080	c.642G>A	c.(640-642)CTG>CTA	p.L214L	RHOBTB1_uc001jlh.2_Silent_p.L214L|RHOBTB1_uc001jlj.2_Silent_p.L214L|RHOBTB1_uc001jlk.2_Silent_p.L214L|RHOBTB1_uc009xpe.1_Silent_p.L152L|RHOBTB1_uc001jll.2_5'UTR	NM_014836	NP_055651	O94844	RHBT1_HUMAN	Rho-related BTB domain containing 1	214					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			upper_aerodigestive_tract(1)	1	Prostate(12;0.0112)					TCCAGAATTGCAGGTGCCTGC	0.473000													64	229					0	0	0	0
SFTPA2	729238	broad.mit.edu	37	10	81319105	81319105	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr10:81319105G>T	uc001kal.3	-	3	232	c.135C>A	c.(133-135)GAC>GAA	p.D45E	SFTPA2_uc001kan.3_Missense_Mutation_p.D45E|SFTPA2_uc001kam.2_RNA	NM_006926	NP_008857	Q8IWL1	SFPA2_HUMAN	RecName: Full=Pulmonary surfactant-associated protein A2;          Short=SP-A2;          Short=SP-A;          Short=PSP-A;          Short=PSPA; AltName: Full=Alveolar proteinosis protein; AltName: Full=35 kDa pulmonary surfactant-associated protein; Flags: Precursor;	45	Collagen-like.				cell junction assembly|respiratory gaseous exchange	collagen|extracellular space	sugar binding				0	all_cancers(46;0.197)|Breast(12;0.000326)|Prostate(51;0.00985)|all_epithelial(25;0.0149)		Epithelial(14;0.00957)|all cancers(16;0.0179)|Colorectal(32;0.229)			CATCTCTCCCGTCCCTGCCTG	0.622000									Pulmonary_Fibrosis_Idiopathic				28	142					2.68265e-12	3.51264e-12	1	0
PNLIPRP1	5407	broad.mit.edu	37	10	118357567	118357567	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr10:118357567A>G	uc001lco.1	+	8	721	c.703A>G	c.(703-705)ACG>GCG	p.T235A	PNLIPRP1_uc001lcp.2_Missense_Mutation_p.T235A	NM_006229	NP_006220	P54315	LIPR1_HUMAN	pancreatic lipase-related protein 1 precursor	235					lipid metabolic process		calcium ion binding|triglyceride lipase activity			ovary(1)|breast(1)	2				all cancers(201;0.0161)		AGGTTTTGGAACGAACCAACA	0.463000													23	15					0	0	0	0
TUBGCP2	10844	broad.mit.edu	37	10	135099030	135099030	+	Missense_Mutation	SNP	C	T	T	rs142228780	byFrequency	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr10:135099030C>T	uc001lmg.1	-	12	2182	c.1825G>A	c.(1825-1827)GCG>ACG	p.A609T	TUBGCP2_uc001lmf.1_Missense_Mutation_p.A202T|TUBGCP2_uc010qvc.1_Missense_Mutation_p.A637T|TUBGCP2_uc009ybk.1_Intron|TUBGCP2_uc010qvd.1_Missense_Mutation_p.A479T|TUBGCP2_uc001lmh.1_RNA	NM_006659	NP_006650	Q9BSJ2	GCP2_HUMAN	tubulin, gamma complex associated protein 2	609					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytoplasmic microtubule|cytosol|spindle pole	protein binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.87e-06)|all cancers(32;8.98e-06)|Epithelial(32;1.15e-05)		CCGCTCAGCGCCAGCTCCGTG	0.642000													20	19					0	0	0	0
OR56B1	387748	broad.mit.edu	37	11	5758676	5758676	+	Silent	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr11:5758676C>T	uc001mbt.1	+	1	930	c.930C>T	c.(928-930)GCC>GCT	p.A310A	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005180	NP_001005180	Q8NGI3	O56B1_HUMAN	olfactory receptor, family 56, subfamily B,	310	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.086)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.184)		TTAGGGCAGCCTTCCAAAAGG	0.418000													44	107					0	0	0	0
OR56A1	120796	broad.mit.edu	37	11	6048915	6048915	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr11:6048915G>T	uc010qzw.1	-	1	20	c.20C>A	c.(19-21)TCA>TAA	p.S7*		NM_001001917	NP_001001917	Q8NGH5	O56A1_HUMAN	olfactory receptor, family 56, subfamily A,	7	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GTTGCTGGGTGACGCCATAGG	0.488000													38	101					1.47197e-15	2.06424e-15	1	0
SLC5A12	159963	broad.mit.edu	37	11	26725200	26725200	+	Silent	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr11:26725200G>A	uc001mra.2	-	6	1012	c.699C>T	c.(697-699)CTC>CTT	p.L233L	SLC5A12_uc001mrb.2_RNA|SLC5A12_uc001mrc.3_Silent_p.L233L	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	233	Extracellular (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						TGTGTCGCCTGAGAGGATCTA	0.403000													29	49					0	0	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136945	40136945	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr11:40136945G>C	uc001mxa.1	-	2	2862	c.898C>G	c.(898-900)CAC>GAC	p.H300D	LRRC4C_uc001mxc.1_Missense_Mutation_p.H296D|LRRC4C_uc001mxd.1_Missense_Mutation_p.H296D|LRRC4C_uc001mxb.1_Missense_Mutation_p.H296D	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	300					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				CAAGGGTTGTGATGTAAATGT	0.478000													32	62					0	0	0	0
PRDM11	56981	broad.mit.edu	37	11	45241231	45241231	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr11:45241231G>A	uc001myo.2	+	7	1016	c.767G>A	c.(766-768)CGG>CAG	p.R256Q		NM_020229	NP_064614	Q9NQV5	PRD11_HUMAN	PR domain containing 11	256	SET.									upper_aerodigestive_tract(1)	1						GAGTGGCTGCGGGTCTGGTAC	0.622000													11	29					0	0	0	0
OR4A15	81328	broad.mit.edu	37	11	55136211	55136211	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr11:55136211C>A	uc010rif.1	+	1	852	c.852C>A	c.(850-852)TTC>TTA	p.F284L		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	284	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CCTGTATCTTCTTGTATGCAA	0.408000													51	214					5.39261e-20	7.93819e-20	1	0
POLA2	23649	broad.mit.edu	37	11	65048604	65048604	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr11:65048604C>G	uc001odj.2	+	8	1228	c.886C>G	c.(886-888)CTG>GTG	p.L296V	POLA2_uc010rod.1_Missense_Mutation_p.L88V|POLA2_uc001odk.2_5'UTR	NM_002689	NP_002680	Q14181	DPOA2_HUMAN	DNA-directed DNA polymerase alpha 2	296					DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	nucleoplasm	DNA binding				0					Dacarbazine(DB00851)	GGAATATTCTCTGTTTCCTGG	0.517000													36	122					0	0	0	0
ADRBK1	156	broad.mit.edu	37	11	67051732	67051732	+	Silent	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr11:67051732G>A	uc009yrn.1	+	18	1808	c.1542G>A	c.(1540-1542)TCG>TCA	p.S514S	ADRBK1_uc009yrm.1_Intron	NM_001619	NP_001610	P25098	ARBK1_HUMAN	beta-adrenergic receptor kinase 1	514	AGC-kinase C-terminal.				activation of phospholipase C activity|cardiac muscle contraction|desensitization of G-protein coupled receptor protein signaling pathway|muscarinic acetylcholine receptor signaling pathway|negative regulation of striated muscle contraction|negative regulation of the force of heart contraction by chemical signal|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|positive regulation of catecholamine secretion|tachykinin receptor signaling pathway	cytosol|soluble fraction	alpha-2A adrenergic receptor binding|ATP binding|beta-adrenergic receptor kinase activity|Edg-2 lysophosphatidic acid receptor binding|G-protein coupled receptor kinase activity|signal transducer activity			large_intestine(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)		Adenosine triphosphate(DB00171)	TCACCATCTCGGAGCGGTGGC	0.592000													49	78					0	0	0	0
NCAM1	4684	broad.mit.edu	37	11	113076802	113076802	+	Silent	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr11:113076802C>A	uc009yyq.1	+	5	868	c.174C>A	c.(172-174)ATC>ATA	p.I58I	NCAM1_uc001pno.2_Silent_p.I58I	NM_001076682	NP_001070150	P13591	NCAM1_HUMAN	neural cell adhesion molecule 1 isoform 3	176	Ig-like C2-type 2.|Extracellular (Potential).				axon guidance|interferon-gamma-mediated signaling pathway	anchored to membrane|extracellular region|Golgi membrane|integral to membrane				ovary(1)	1		all_cancers(61;5.82e-19)|all_epithelial(67;6.87e-12)|Melanoma(852;1.99e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;0.00119)|Breast(348;0.0109)|all_neural(223;0.0299)|Medulloblastoma(222;0.0458)|Renal(330;0.198)|Prostate(24;0.207)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.000114)|all cancers(92;0.000467)|OV - Ovarian serous cystadenocarcinoma(223;0.212)		ACCTGCAGATCCGGGGCATCA	0.507000													25	153					5.35356e-11	6.85834e-11	1	0
ZW10	9183	broad.mit.edu	37	11	113639651	113639651	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr11:113639651T>A	uc001poe.2	-	2	181	c.144A>T	c.(142-144)GAA>GAT	p.E48D	ZW10_uc009yyv.2_RNA	NM_004724	NP_004715	O43264	ZW10_HUMAN	centromere/kinetochore protein zw10	48	Interaction with RINT1.|Interaction with ZWINT.|Potential.				cell division|ER to Golgi vesicle-mediated transport|establishment of mitotic spindle orientation|meiosis|mitotic cell cycle checkpoint|mitotic metaphase plate congression|mitotic prometaphase|protein complex assembly|protein localization to kinetochore|protein transport|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|endoplasmic reticulum membrane|kinetochore microtubule|nucleus|spindle pole	centromeric DNA binding|protein binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.84e-16)|all_epithelial(67;1e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000237)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0421)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.94e-06)|Epithelial(105;0.000103)|all cancers(92;0.000786)		TAGGCAGGAATTCACTGTACT	0.403000													62	66					0	0	0	0
CEP164	22897	broad.mit.edu	37	11	117282544	117282544	+	Silent	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr11:117282544G>A	uc001prc.2	+	32	4344	c.4197G>A	c.(4195-4197)TCG>TCA	p.S1399S	CEP164_uc001prb.2_Silent_p.S1394S|CEP164_uc001prf.2_RNA|CEP164_uc009yzp.1_RNA	NM_014956	NP_055771	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	1399					cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		ACTCCCATTCGCAAGTCCCTG	0.582000													5	120					0	0	0	0
NTM	50863	broad.mit.edu	37	11	132016264	132016264	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr11:132016264C>T	uc001qgp.2	+	2	920	c.256C>T	c.(256-258)CCT>TCT	p.P86S	NTM_uc001qgm.2_Missense_Mutation_p.P86S|NTM_uc010sch.1_Missense_Mutation_p.P77S|NTM_uc010sci.1_Missense_Mutation_p.P86S|NTM_uc010scj.1_Missense_Mutation_p.P45S|NTM_uc001qgo.2_Missense_Mutation_p.P86S|NTM_uc001qgq.2_Missense_Mutation_p.P86S	NM_016522	NP_057606	Q9P121	NTRI_HUMAN	neurotrimin isoform 1	86	Ig-like C2-type 1.				cell adhesion|neuron recognition	anchored to membrane|plasma membrane				ovary(4)|central_nervous_system(1)|skin(1)	6						GTGCCTGGATCCTCGCGTGGT	0.572000													21	71					0	0	0	0
DYRK4	8798	broad.mit.edu	37	12	4721873	4721873	+	Missense_Mutation	SNP	C	G	G	rs141423818	by1000genomes	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr12:4721873C>G	uc001qmx.2	+	12	1470	c.1310C>G	c.(1309-1311)TCG>TGG	p.S437W	DYRK4_uc009zeh.1_Missense_Mutation_p.S552W|DYRK4_uc001qmy.1_Missense_Mutation_p.S437W|DYRK4_uc001qmz.1_Missense_Mutation_p.S151W|DYRK4_uc001qna.1_Missense_Mutation_p.S74W|DYRK4_uc010ser.1_Missense_Mutation_p.S74W	NM_003845	NP_003836	Q9NR20	DYRK4_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	437						Golgi apparatus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|skin(1)	3			Colorectal(7;0.103)			TGTCATCACTCGAGCAGAAAA	0.468000													42	49					0	0	0	0
TPI1	7167	broad.mit.edu	37	12	6976735	6976735	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr12:6976735C>T	uc001qrk.2	+	1	43	c.5C>T	c.(4-6)GCG>GTG	p.A2V	TPI1_uc010sfo.1_5'Flank	NM_000365	NP_000356	P60174	TPIS_HUMAN	triosephosphate isomerase 1 isoform 1	2					fatty acid biosynthetic process|gluconeogenesis|glycolysis|pentose-phosphate shunt	cytosol	triose-phosphate isomerase activity				0						AGCGCCATGGCGCCCTCCAGG	0.597000													8	18					0	0	0	0
PRB1	5542	broad.mit.edu	37	12	11506584	11506584	+	Silent	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr12:11506584G>T	uc001qzw.1	-	3	490	c.453C>A	c.(451-453)CCC>CCA	p.P151P	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	212	15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].|8.		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			GAGGAGATCAGGGACTTCGGG	0.612000													142	552					6.51847e-42	1.00317e-41	1	0
ARID2	196528	broad.mit.edu	37	12	46215209	46215209	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr12:46215209G>T	uc001ros.1	+	6	644	c.644G>T	c.(643-645)GGA>GTA	p.G215V	ARID2_uc001ror.2_Missense_Mutation_p.G215V	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	215					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		TTAGCTTTAGGATCCTTTTCC	0.254000													13	56					9.05144e-12	1.17224e-11	1	0
SDR9C7	121214	broad.mit.edu	37	12	57323300	57323300	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr12:57323300T>C	uc010sqw.1	-	3	598	c.598A>G	c.(598-600)ATT>GTT	p.I200V		NM_148897	NP_683695	Q8NEX9	DR9C7_HUMAN	short chain dehydrogenase/reductase family 9C,	200						cytoplasm	binding|oxidoreductase activity			central_nervous_system(1)	1						CCTGGCTCAATGATGCAGACT	0.552000													31	33					0	0	0	0
LRP1	4035	broad.mit.edu	37	12	57550688	57550688	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr12:57550688G>A	uc001snd.2	+	10	2012	c.1546G>A	c.(1546-1548)GGG>AGG	p.G516R		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	516	EGF-like 3.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GGGCAGTGACGGGAAGTCATG	0.657000													3	10					0	0	0	0
RBM19	9904	broad.mit.edu	37	12	114261056	114261056	+	Silent	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr12:114261056G>A	uc009zwi.2	-	24	3000	c.2856C>T	c.(2854-2856)GAC>GAT	p.D952D	RBM19_uc001tvn.3_Silent_p.D952D|RBM19_uc001tvm.2_Silent_p.D952D	NM_001146699	NP_001140171	Q9Y4C8	RBM19_HUMAN	RNA binding motif protein 19	952					multicellular organismal development|positive regulation of embryonic development	chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|RNA binding			skin(3)|ovary(1)|liver(1)|central_nervous_system(1)	6	Medulloblastoma(191;0.163)|all_neural(191;0.178)					GCTCCTCGCTGTCGCTGTCAC	0.637000													16	32					0	0	0	0
GPR109B	8843	broad.mit.edu	37	12	123200755	123200755	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr12:123200755C>T	uc001ucy.3	-	1	685	c.530G>A	c.(529-531)TGC>TAC	p.C177Y	GPR81_uc001ucw.1_Intron	NM_006018	NP_006009	P49019	HCAR3_HUMAN	G protein-coupled receptor 109B	177	Extracellular (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	GAAGCTGATGCACACATTTGC	0.537000													29	53					0	0	0	0
DCLK1	9201	broad.mit.edu	37	13	36700222	36700222	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr13:36700222G>A	uc001uvf.2	-	2	286	c.53C>T	c.(52-54)GCG>GTG	p.A18V		NM_004734	NP_004725	O15075	DCLK1_HUMAN	doublecortin-like kinase 1	18					cell differentiation|central nervous system development|endosome transport|intracellular signal transduction|response to virus	integral to plasma membrane	ATP binding|protein serine/threonine kinase activity|receptor signaling protein activity			stomach(6)|ovary(2)|skin(1)	9		Breast(139;0.0147)|Lung SC(185;0.0685)|Prostate(109;0.122)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.72e-06)|Epithelial(112;4.24e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00159)|OV - Ovarian serous cystadenocarcinoma(117;0.0158)|GBM - Glioblastoma multiforme(144;0.0638)		GTATCTCTGCGCCTTATCCCG	0.622000													25	41					0	0	0	0
SPERT	220082	broad.mit.edu	37	13	46288501	46288501	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr13:46288501G>T	uc001van.1	+	3	1421	c.1341G>T	c.(1339-1341)AGG>AGT	p.R447S	SPERT_uc001vao.2_Missense_Mutation_p.R411S	NM_152719	NP_689932	Q8NA61	SPERT_HUMAN	spermatid associated	447						cytoplasmic membrane-bounded vesicle				central_nervous_system(1)|pancreas(1)	2		Breast(56;0.000819)|Lung NSC(96;0.00227)|Prostate(109;0.00703)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.26e-05)		AGCCTAGCAGGGTCTGAGGCC	0.622000													6	7					3.59834e-05	3.92998e-05	1	0
SLITRK5	26050	broad.mit.edu	37	13	88328994	88328994	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr13:88328994C>A	uc001vln.2	+	2	1570	c.1351C>A	c.(1351-1353)CGC>AGC	p.R451S	SLITRK5_uc010tic.1_Missense_Mutation_p.R210S	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	451	Extracellular (Potential).|LRR 8.					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					GATCCAGGACCGCGCTTTCGG	0.597000													35	21					9.65963e-10	1.18618e-09	1	0
GPC5	2262	broad.mit.edu	37	13	92345880	92345880	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr13:92345880G>C	uc010tif.1	+	3	1131	c.765G>C	c.(763-765)ATG>ATC	p.M255I		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	255						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				TCCTGAAGATGCAATACTGCC	0.552000													30	25					0	0	0	0
GPC5	2262	broad.mit.edu	37	13	93518663	93518663	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr13:93518663G>C	uc010tif.1	+	8	2056	c.1690G>C	c.(1690-1692)GTG>CTG	p.V564L		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	564						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				TCTGATAAGTGTGGTGATGTT	0.433000													55	31					0	0	0	0
FAM155A	728215	broad.mit.edu	37	13	107822853	107822853	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr13:107822853C>A	uc001vql.2	-	3	1885	c.1369G>T	c.(1369-1371)GAG>TAG	p.E457*		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	457						integral to membrane	binding			skin(1)	1						CGTTACTCCTCATTGGTTGAG	0.522000													31	19					2.61193e-14	3.5782e-14	1	0
NPAS3	64067	broad.mit.edu	37	14	34243588	34243588	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr14:34243588C>A	uc001wru.2	+	8	962	c.898C>A	c.(898-900)CAC>AAC	p.H300N	NPAS3_uc001wrs.2_Missense_Mutation_p.H287N|NPAS3_uc001wrt.2_Missense_Mutation_p.H268N|NPAS3_uc001wrv.2_Missense_Mutation_p.H270N	NM_173159	NP_071406	Q8IXF0	NPAS3_HUMAN	neuronal PAS domain protein 3 isoform 3	300					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)|skin(1)	2	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		GTCGCTGTCCCACGGGAGGAC	0.498000													22	73					1.50039e-11	1.93257e-11	1	0
FSCB	84075	broad.mit.edu	37	14	44974135	44974135	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr14:44974135G>A	uc001wvn.2	-	1	2365	c.2056C>T	c.(2056-2058)CCA>TCA	p.P686S		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	686						cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		TCCTCAGCTGGTAGAGACTGA	0.597000													14	16					0	0	0	0
TRIM9	114088	broad.mit.edu	37	14	51464789	51464789	+	Silent	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr14:51464789G>A	uc001wyx.3	-	7	2347	c.1582C>T	c.(1582-1584)CTG>TTG	p.L528L	TRIM9_uc001wyy.2_Silent_p.L524L|TRIM9_uc001wyz.3_Silent_p.L528L	NM_015163	NP_055978	Q9C026	TRIM9_HUMAN	tripartite motif protein 9 isoform 1	528	Fibronectin type-III.				proteasomal ubiquitin-dependent protein catabolic process	cell junction|cytoskeleton|dendrite|synaptic vesicle	protein homodimerization activity|ubiquitin-protein ligase activity|zinc ion binding			skin(2)|lung(1)	3	all_epithelial(31;0.00418)|Breast(41;0.148)					TGGAGGACCAGGGTCTTGCTG	0.552000													13	42					0	0	0	0
HIF1A	3091	broad.mit.edu	37	14	62204929	62204929	+	Silent	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr14:62204929G>A	uc001xfq.2	+	10	1778	c.1374G>A	c.(1372-1374)ACG>ACA	p.T458T	HIF1A_uc001xfr.2_Silent_p.T458T|HIF1A_uc001xfs.2_Silent_p.T459T	NM_001530	NP_001521	Q16665	HIF1A_HUMAN	hypoxia-inducible factor 1, alpha subunit	458	ODD.				cellular response to hypoxia|collagen metabolic process|connective tissue replacement involved in inflammatory response wound healing|elastin metabolic process|epithelial to mesenchymal transition|oxygen homeostasis|positive regulation of chemokine production|positive regulation of epithelial cell migration|positive regulation of hormone biosynthetic process|positive regulation of nitric-oxide synthase activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation vascular endothelial growth factor production|regulation of transcription from RNA polymerase II promoter in response to oxidative stress|regulation of transforming growth factor-beta2 production	cytoplasm|nucleolus|transcription factor complex	histone acetyltransferase binding|Hsp90 protein binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription factor binding|transcription regulatory region DNA binding			kidney(3)|lung(1)	4				OV - Ovarian serous cystadenocarcinoma(108;1.62e-09)|BRCA - Breast invasive adenocarcinoma(234;0.189)		CCGCTGAAACGCCAAAGCCAC	0.403000													49	81					0	0	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72175990	72175990	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr14:72175990G>A	uc001xms.2	+	15	4228	c.3880G>A	c.(3880-3882)GCG>ACG	p.A1294T	SIPA1L1_uc001xmt.2_Missense_Mutation_p.A1273T|SIPA1L1_uc001xmu.2_Missense_Mutation_p.A1273T|SIPA1L1_uc001xmv.2_Missense_Mutation_p.A1294T|SIPA1L1_uc010ttm.1_Missense_Mutation_p.A748T|SIPA1L1_uc001xmw.2_Missense_Mutation_p.A59T	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1294	Ser-rich.				actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		CTCCAGCAATGCGTCAAGTGC	0.483000													17	56					0	0	0	0
EML5	161436	broad.mit.edu	37	14	89088975	89088975	+	Silent	SNP	A	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr14:89088975A>G	uc001xxg.2	-	37	5172	c.4986T>C	c.(4984-4986)GAT>GAC	p.D1662D	EML5_uc001xxf.2_Silent_p.D449D|EML5_uc001xxh.1_Silent_p.D793D|EML5_uc001xxd.2_5'Flank|EML5_uc001xxe.2_5'Flank	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	1654						cytoplasm|microtubule				ovary(3)	3						AACGAACACAATCTGTGGCTT	0.473000													23	55					0	0	0	0
RIN3	79890	broad.mit.edu	37	14	93151468	93151468	+	Silent	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr14:93151468G>A	uc001yap.2	+	9	2756	c.2604G>A	c.(2602-2604)AAG>AAA	p.K868K	RIN3_uc010auk.2_Silent_p.K530K|RIN3_uc001yaq.2_Silent_p.K793K|RIN3_uc001yas.1_Silent_p.K530K	NM_024832	NP_079108	Q8TB24	RIN3_HUMAN	Ras and Rab interactor 3	868					endocytosis|signal transduction	cytoplasmic membrane-bounded vesicle|early endosome	GTPase activator activity|Ras GTPase binding			lung(2)|ovary(1)	3		all_cancers(154;0.0701)				CTCTCAACAAGGCCCGGGCCT	0.662000													10	33					0	0	0	0
SERPINA1	5265	broad.mit.edu	37	14	94845935	94845935	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr14:94845935G>T	uc001ycx.3	-	4	1192	c.931C>A	c.(931-933)CAT>AAT	p.H311N	SERPINA1_uc001ycw.3_RNA|SERPINA1_uc010auw.2_Missense_Mutation_p.H311N|SERPINA1_uc010aux.2_Missense_Mutation_p.H311N|SERPINA1_uc001ycy.3_Missense_Mutation_p.H311N|SERPINA1_uc010auy.2_Missense_Mutation_p.H311N|SERPINA1_uc001ycz.3_Missense_Mutation_p.H311N|SERPINA1_uc010auz.2_Missense_Mutation_p.H311N|SERPINA1_uc010ava.2_Missense_Mutation_p.H311N|SERPINA1_uc001ydb.3_Missense_Mutation_p.H311N|SERPINA1_uc010avb.2_Missense_Mutation_p.H311N|SERPINA1_uc001ydc.3_Missense_Mutation_p.H311N|SERPINA1_uc001yda.1_Missense_Mutation_p.H311N	NM_000295	NP_000286	P01009	A1AT_HUMAN	serine proteinase inhibitor, clade A, member 1	311					acute-phase response|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen|proteinaceous extracellular matrix	protease binding|serine-type endopeptidase inhibitor activity			skin(1)	1		all_cancers(154;0.0649)|all_epithelial(191;0.223)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)	Alpha-1-proteinase inhibitor(DB00058)	TTGGGTAAATGTAAGCTGGCA	0.493000									Alpha-1-Antitrypsin_Deficiency				30	80					5.60225e-13	7.50132e-13	1	0
SERPINA5	5104	broad.mit.edu	37	14	95054055	95054055	+	Missense_Mutation	SNP	A	T	T	rs144727156	byFrequency	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr14:95054055A>T	uc001ydm.2	+	3	566	c.356A>T	c.(355-357)AAC>ATC	p.N119I	SERPINA5_uc010ave.2_Missense_Mutation_p.N119I|SERPINA5_uc001ydn.1_Missense_Mutation_p.N119I	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	119					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	CAGGAACTCAACCAGCCCAGA	0.567000													11	22					0	0	0	0
SNORD114-28	767609	broad.mit.edu	37	14	101454501	101454501	+	5'Flank	SNP	T	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr14:101454501T>A	uc001yjs.2	+						SNORD114-27_uc001yjr.2_RNA|SNORD114-29_uc001yjt.1_5'Flank	NR_003221				Homo sapiens small nucleolar RNA, C/D box 114-28 (SNORD114-28), non-coding RNA.												0						AGAATCCTGGTTCAGTGTTGA	0.333000													16	30					0	0	0	0
APBA2	321	broad.mit.edu	37	15	29346999	29346999	+	Silent	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr15:29346999C>T	uc001zck.2	+	3	1119	c.912C>T	c.(910-912)ACC>ACT	p.T304T	APBA2_uc010azj.2_Silent_p.T304T|APBA2_uc010uat.1_Silent_p.T304T|APBA2_uc001zcl.2_Silent_p.T304T|APBA2_uc010uas.1_Silent_p.T304T	NM_005503	NP_005494	Q99767	APBA2_HUMAN	amyloid beta A4 precursor protein-binding,	304					nervous system development|protein transport		protein binding				0		all_lung(180;1.73e-12)|Breast(32;2.89e-05)|Colorectal(260;0.234)		all cancers(64;7.44e-11)|Epithelial(43;5.74e-10)|GBM - Glioblastoma multiforme(186;0.026)|BRCA - Breast invasive adenocarcinoma(123;0.0286)|Lung(196;0.24)		AGCCCAAGACCAGGACCCCAG	0.677000													5	24					0	0	0	0
VPS13C	54832	broad.mit.edu	37	15	62167104	62167104	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr15:62167104C>A	uc002agz.2	-	77	10459	c.10385G>T	c.(10384-10386)GGA>GTA	p.G3462V	VPS13C_uc002aha.2_Missense_Mutation_p.G3419V|VPS13C_uc002ahb.1_Missense_Mutation_p.G3462V|VPS13C_uc002ahc.1_Missense_Mutation_p.G3419V	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	3462					protein localization					ovary(2)	2						GCTTCTCACTCCAATCACTAA	0.299000													13	18					1.96292e-10	2.43567e-10	1	0
GPR139	124274	broad.mit.edu	37	16	20043388	20043388	+	Missense_Mutation	SNP	C	G	G	rs140063049	byFrequency	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr16:20043388C>G	uc002dgu.1	-	2	893	c.731G>C	c.(730-732)CGC>CCC	p.R244P	GPR139_uc010vaw.1_Missense_Mutation_p.R151P	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	244	Helical; Name=6; (Potential).					integral to membrane|plasma membrane				ovary(2)	2						CATGATGATGCGGGGGGCCCA	0.542000													27	59					0	0	0	0
DCUN1D3	123879	broad.mit.edu	37	16	20873495	20873496	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr16:20873495_20873496GG>TT	uc002dhz.2	-	2	506_507	c.365_366CC>AA	c.(364-366)CCC>CAA	p.P122Q	ERI2_uc002dht.3_Intron	NM_173475	NP_775746	Q8IWE4	DCNL3_HUMAN	DCN1, defective in cullin neddylation 1, domain	122	DCUN1.				negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|positive regulation of apoptosis|response to gamma radiation|response to UV-C	perinuclear region of cytoplasm				ovary(2)	2				GBM - Glioblastoma multiforme(48;0.249)		GAAATTCTGTGGGGTCAACACA	0.485000													31	90					0	0	0	0
Unknown	0	broad.mit.edu	37	16	33020772	33020772	+	IGR	SNP	A	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr16:33020772A>C								SLC6A10P (124309 upstream) : MIR1826 (944736 downstream)																							GCCAGGCTCCAGGGAAGGGAC	0.562000													110	310					0	0	0	0
N4BP1	9683	broad.mit.edu	37	16	48595684	48595684	+	Silent	SNP	A	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr16:48595684A>G	uc002efp.2	-	2	1107	c.870T>C	c.(868-870)TCT>TCC	p.S290S		NM_153029	NP_694574	O75113	N4BP1_HUMAN	Nedd4 binding protein 1	290					negative regulation of proteasomal ubiquitin-dependent protein catabolic process|negative regulation of protein ubiquitination	nucleolus|PML body					0		all_cancers(37;0.179)|all_lung(18;0.11)				GCCTTTCTTCAGAATCAGAAA	0.408000													19	46					0	0	0	0
SLC12A4	6560	broad.mit.edu	37	16	67984561	67984561	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr16:67984561C>T	uc002euz.2	-	11	1591	c.1450G>A	c.(1450-1452)GAC>AAC	p.D484N	SLC12A4_uc010ceu.2_Missense_Mutation_p.D478N|SLC12A4_uc010vkh.1_Missense_Mutation_p.D453N|SLC12A4_uc010vki.1_Missense_Mutation_p.D484N|SLC12A4_uc010vkj.1_Missense_Mutation_p.D486N|SLC12A4_uc002eva.2_Missense_Mutation_p.D484N|SLC12A4_uc002evb.2_Intron	NM_005072	NP_005063	Q9UP95	S12A4_HUMAN	solute carrier family 12, member 4 isoform a	484	Cytoplasmic (Potential).				cell volume homeostasis|potassium ion transport|sodium ion transport	integral to plasma membrane|membrane fraction	potassium:chloride symporter activity			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	ACTCACTTGTCCCGGAGAACC	0.632000													3	15					0	0	0	0
ATP2C2	9914	broad.mit.edu	37	16	84492912	84492912	+	Silent	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr16:84492912C>T	uc002fhx.2	+	23	2342	c.2253C>T	c.(2251-2253)ACC>ACT	p.T751T	ATP2C2_uc010chj.2_Silent_p.T751T|ATP2C2_uc002fhy.2_Silent_p.T768T|ATP2C2_uc002fhz.2_Silent_p.T600T|ATP2C2_uc002fia.2_5'Flank	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	751	Helical; Name=6; (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						CTCTGTCCACCGTGTTCAACC	0.642000													26	73					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7577142	7577143	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr17:7577142_7577143CC>AA	uc002gim.2	-	8	989_990	c.795_796GG>TT	c.(793-798)CTGGGA>CTTTGA	p.G266*	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Nonsense_Mutation_p.G266*|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Nonsense_Mutation_p.G134*|TP53_uc010cng.1_Nonsense_Mutation_p.G134*|TP53_uc002gii.1_Nonsense_Mutation_p.G134*|TP53_uc010cnh.1_Nonsense_Mutation_p.G266*|TP53_uc010cni.1_Nonsense_Mutation_p.G266*|TP53_uc002gij.2_Nonsense_Mutation_p.G266*	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	266	|Interaction with E4F1.|Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		G -> R (in sporadic cancers; somatic mutation).|G -> V (in sporadic cancers; somatic mutation).|G -> E (in sporadic cancers; somatic mutation).|G -> A (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.G266E(45)|p.G266R(42)|p.G266V(31)|p.G266*(12)|p.0?(7)|p.G266fs*79(5)|p.?(3)|p.G262_F270delGNLLGRNSF(2)|p.G266A(2)|p.G266G(2)|p.G262_S269delGNLLGRNS(2)|p.G266_E271delGRNSFE(2)|p.L265L(2)|p.G266T(1)|p.G266_N268delGRN(1)|p.E258fs*71(1)|p.G266fs*9(1)|p.G262fs*2(1)|p.L265_R267delLGR(1)|p.L265_K305del41(1)|p.G266fs*4(1)|p.L265P(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CTGTTCCGTCCCAGTAGATTAC	0.520000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			8	13					0	0	0	0
ARHGEF15	22899	broad.mit.edu	37	17	8215500	8215500	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr17:8215500G>A	uc002glc.2	+	2	264	c.143G>A	c.(142-144)CGA>CAA	p.R48Q	ARHGEF15_uc002glb.1_Missense_Mutation_p.R48Q|ARHGEF15_uc002gld.2_Missense_Mutation_p.R48Q|ARHGEF15_uc010vuw.1_Missense_Mutation_p.R48Q	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15	48	Pro-rich.				negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						GAACTACCCCGAAACTCCAAT	0.632000													50	97					0	0	0	0
MYH1	4619	broad.mit.edu	37	17	10402040	10402040	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr17:10402040G>T	uc002gmo.2	-	30	4178	c.4084C>A	c.(4084-4086)CAG>AAG	p.Q1362K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1362	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						ATTGCTCTCTGTAGCTCGGCC	0.592000													41	85					4.14481e-20	6.1395e-20	1	0
MYO15A	51168	broad.mit.edu	37	17	18067125	18067125	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr17:18067125T>A	uc010vxh.1	+	59	10098	c.9760T>A	c.(9760-9762)TAT>AAT	p.Y3254N	MYO15A_uc010vxi.1_Missense_Mutation_p.Y518N|MYO15A_uc010vxk.1_5'UTR|MYO15A_uc010vxl.1_Missense_Mutation_p.Y243N|MYO15A_uc002gsl.2_Missense_Mutation_p.Y261N|MYO15A_uc010vxm.1_Missense_Mutation_p.Y176N|MYO15A_uc002gsm.1_Missense_Mutation_p.Y176N|MYO15A_uc010cpv.2_RNA	NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	3254	Tail.|FERM.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CTTCAATGAATATGTTATCTT	0.463000													7	17					0	0	0	0
Unknown	0	broad.mit.edu	37	17	21730864	21730864	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr17:21730864C>A	uc002gyy.3	+	2	291	c.166C>A	c.(166-168)CTT>ATT	p.L56I						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		TGGCCGCAGTCTTTCTGACTA	0.512000													26	41					3.6726e-16	5.21202e-16	1	0
PSMD11	5717	broad.mit.edu	37	17	30801833	30801833	+	Silent	SNP	A	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr17:30801833A>G	uc010cta.1	+	8	880	c.840A>G	c.(838-840)GCA>GCG	p.A280A	PSMD11_uc010wbz.1_Silent_p.A280A|PSMD11_uc002hhm.2_Silent_p.A280A	NM_002815	NP_002806	O00231	PSD11_HUMAN	proteasome 26S non-ATPase subunit 11	280	PCI.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome complex	protein binding			ovary(1)	1		Breast(31;0.159)|Ovarian(249;0.182)	BRCA - Breast invasive adenocarcinoma(9;0.109)			TTCGGTATGCAGGGAGGCAGG	0.488000													3	47					0	0	0	0
IMP5	162540	broad.mit.edu	37	17	43922823	43922823	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr17:43922823A>T	uc010wka.1	+	1	551	c.551A>T	c.(550-552)GAC>GTC	p.D184V	LOC100128977_uc010wjz.1_Intron	NM_175882	NP_787078	Q8IUH8	IMP5_HUMAN	intramembrane protease 5 precursor	184	Extracellular (Potential).					integral to membrane	aspartic-type endopeptidase activity			pancreas(2)	2	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.148)		CCCATCATCGACTACAACATG	0.637000													37	86					0	0	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60342256	60342257	+	RNA	DNP	AG	TT	TT			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr17:60342256_60342257AG>TT	uc010woz.1	-	14		c.1872_1873CT>AA				NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						ATGTCTCTCGAGCTGCACTCTT	0.485000													27	59					0	0	0	0
TAF4B	6875	broad.mit.edu	37	18	23873435	23873435	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr18:23873435C>T	uc002kvu.3	+	9	2261	c.1772C>T	c.(1771-1773)TCA>TTA	p.S591L	TAF4B_uc002kvs.3_RNA|TAF4B_uc002kvt.3_Missense_Mutation_p.S596L	NM_005640	NP_005631	Q92750	TAF4B_HUMAN	TAF4b RNA polymerase II, TATA box binding	591					transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleolus|transcription factor TFIID complex	DNA binding|NF-kappaB binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)|skin(1)	3	all_cancers(21;0.00151)|Lung NSC(5;0.000401)|all_lung(6;0.00115)|Ovarian(20;0.124)		Epithelial(2;9.57e-07)|all cancers(3;5.15e-06)|OV - Ovarian serous cystadenocarcinoma(3;1.96e-05)|LUSC - Lung squamous cell carcinoma(2;0.00594)|Lung(2;0.0267)			AAAATTCTGTCACTTCAAGCA	0.289000													9	13					0	0	0	0
TAF4B	6875	broad.mit.edu	37	18	23873440	23873440	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr18:23873440C>T	uc002kvu.3	+	9	2266	c.1777C>T	c.(1777-1779)CAA>TAA	p.Q593*	TAF4B_uc002kvs.3_RNA|TAF4B_uc002kvt.3_Nonsense_Mutation_p.Q598*	NM_005640	NP_005631	Q92750	TAF4B_HUMAN	TAF4b RNA polymerase II, TATA box binding	593					transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleolus|transcription factor TFIID complex	DNA binding|NF-kappaB binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)|skin(1)	3	all_cancers(21;0.00151)|Lung NSC(5;0.000401)|all_lung(6;0.00115)|Ovarian(20;0.124)		Epithelial(2;9.57e-07)|all cancers(3;5.15e-06)|OV - Ovarian serous cystadenocarcinoma(3;1.96e-05)|LUSC - Lung squamous cell carcinoma(2;0.00594)|Lung(2;0.0267)			TCTGTCACTTCAAGCATCTCC	0.284000													10	14					0	0	0	0
CDH19	28513	broad.mit.edu	37	18	64172320	64172320	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr18:64172320C>G	uc002lkc.1	-	12	2186	c.2048G>C	c.(2047-2049)AGG>ACG	p.R683T	CDH19_uc010dql.1_RNA|CDH19_uc010xey.1_3'UTR	NM_021153	NP_066976	Q9H159	CAD19_HUMAN	cadherin 19, type 2 preproprotein	683	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2		Esophageal squamous(42;0.0132)				CAAAGACTGCCTGTATAGGCT	0.483000													47	56					0	0	0	0
MARCH2	51257	broad.mit.edu	37	19	8486776	8486776	+	Missense_Mutation	SNP	G	A	A	rs141281179		TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr19:8486776G>A	uc002mjv.2	+	3	493	c.52G>A	c.(52-54)GGC>AGC	p.G18S	MARCH2_uc002mjw.2_Missense_Mutation_p.G18S|MARCH2_uc002mjx.2_Missense_Mutation_p.G18S	NM_016496	NP_057580	Q9P0N8	MARH2_HUMAN	membrane-associated ring finger (C3HC4) 2	18					endocytosis	cytoplasmic vesicle|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						TGACTGCTCCGGCAGCCCTGC	0.677000													22	67					0	0	0	0
OR7G2	390882	broad.mit.edu	37	19	9213869	9213869	+	Silent	SNP	C	T	T	rs141362700		TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr19:9213869C>T	uc010xkk.1	-	1	114	c.114G>A	c.(112-114)CTG>CTA	p.L38L		NM_001005193	NP_001005193	Q8NG99	OR7G2_HUMAN	olfactory receptor, family 7, subfamily G,	17	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GATCCTCTATCAGTCCCAGGA	0.458000													20	42					0	0	0	0
RGL3	57139	broad.mit.edu	37	19	11510580	11510580	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr19:11510580G>T	uc002mrp.2	-	16	1761	c.1697C>A	c.(1696-1698)CCT>CAT	p.P566H	RGL3_uc002mrn.2_Missense_Mutation_p.P330H|RGL3_uc002mrm.2_Missense_Mutation_p.P330H|RGL3_uc002mro.2_Missense_Mutation_p.P572H	NM_001035223	NP_001030300	Q3MIN7	RGL3_HUMAN	ral guanine nucleotide dissociation	566	Pro-rich.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular				ovary(1)	1						ACTGCCAGCAGGAGCATCTCT	0.667000													22	37					7.41877e-09	8.92512e-09	1	0
TMEM59L	25789	broad.mit.edu	37	19	18729276	18729276	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr19:18729276G>C	uc002njy.3	+	7	961	c.874G>C	c.(874-876)GCG>CCG	p.A292P		NM_012109	NP_036241	Q9UK28	TM59L_HUMAN	brain-specific membrane-anchored protein	292						Golgi membrane|integral to membrane|membrane fraction				ovary(2)|skin(2)	4						CCTGGTGACCGCGCCTGGCCA	0.667000													3	14					0	0	0	0
APLP1	333	broad.mit.edu	37	19	36362583	36362583	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr19:36362583C>T	uc002oce.2	+	5	745	c.607C>T	c.(607-609)CGT>TGT	p.R203C	APLP1_uc010xsz.1_Missense_Mutation_p.R164C|APLP1_uc002ocf.2_Missense_Mutation_p.R203C|APLP1_uc002ocg.2_Missense_Mutation_p.R106C|APLP1_uc010xta.1_Missense_Mutation_p.R197C	NM_005166	NP_005157	P51693	APLP1_HUMAN	amyloid precursor-like protein 1 isoform 2	203	Extracellular (Potential).				apoptosis|cell adhesion|cellular response to norepinephrine stimulus|endocytosis|negative regulation of cAMP biosynthetic process|nervous system development|organ morphogenesis	basement membrane|integral to membrane|perinuclear region of cytoplasm|plasma membrane	alpha-2A adrenergic receptor binding|alpha-2B adrenergic receptor binding|alpha-2C adrenergic receptor binding|heparin binding|identical protein binding|metal ion binding			ovary(2)	2	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGATCGGTTCCGTGGTGTGGA	0.637000													23	26					0	0	0	0
Unknown	0	broad.mit.edu	37	19	39292310	39292310	+	IGR	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr19:39292310C>A								LGALS7B (9917 upstream) : LGALS4 (2 downstream)																							GAGACACACACTCATGAGACA	0.378000													10	13					0.00621372	0.00640283	1	0
SIGLEC12	89858	broad.mit.edu	37	19	52000164	52000164	+	Missense_Mutation	SNP	G	T	T	rs145034575		TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr19:52000164G>T	uc002pwx.1	-	7	1625	c.1569C>A	c.(1567-1569)GAC>GAA	p.D523E	SIGLEC12_uc002pww.1_Missense_Mutation_p.D405E|SIGLEC12_uc010eoy.1_Missense_Mutation_p.D250E	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	523	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CAGCGTTTGCGTCCTCCATGC	0.577000													27	34					3.65163e-15	5.0316e-15	1	0
DPRX	503834	broad.mit.edu	37	19	54135364	54135364	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr19:54135364C>A	uc002qcf.1	+	1	55	c.4C>A	c.(4-6)CCA>ACA	p.P2T		NM_001012728	NP_001012746	A6NFQ7	DPRX_HUMAN	divergent-paired related homeobox	2						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.013)		TTAGAAGATGCCAGGCTCAGA	0.498000													36	49					1.07637e-12	1.42513e-12	1	0
RNASEH1	246243	broad.mit.edu	37	2	3598055	3598055	+	Silent	SNP	G	A	A	rs139176330		TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:3598055G>A	uc002qxt.2	-	4	507	c.417C>T	c.(415-417)TTC>TTT	p.F139F	RNASEH1_uc002qxs.2_Silent_p.F22F	NM_002936	NP_002927	O60930	RNH1_HUMAN	ribonuclease H1	139	RNase H.				RNA catabolic process	cytoplasm	magnesium ion binding|ribonuclease H activity|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)			OV - Ovarian serous cystadenocarcinoma(76;0.0713)|Epithelial(75;0.167)|all cancers(51;0.22)		AGACGACGACGAAGTCTCCTG	0.493000													4	123					0	0	0	0
VIT	5212	broad.mit.edu	37	2	37035846	37035846	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:37035846G>C	uc002rpl.2	+	15	1842	c.1621G>C	c.(1621-1623)GAG>CAG	p.E541Q	VIT_uc002rpm.2_Missense_Mutation_p.E519Q|VIT_uc010ezv.2_Missense_Mutation_p.E497Q|VIT_uc010ezw.2_Missense_Mutation_p.E498Q	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	526	VWFA 2.					proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				CAAAGAGTTTGAGATTTCCGA	0.582000													26	52					0	0	0	0
HEATR5B	54497	broad.mit.edu	37	2	37232867	37232867	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:37232867C>A	uc002rpp.1	-	30	4909	c.4813G>T	c.(4813-4815)GAG>TAG	p.E1605*	HEATR5B_uc010ezy.1_Nonsense_Mutation_p.E189*	NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	1605							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				ATGGGCTCCTCAGGTCTAGGG	0.408000													15	30					0.000308642	0.000329496	1	0
ZFP36L2	678	broad.mit.edu	37	2	43451842	43451842	+	Silent	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:43451842C>A	uc002rsv.3	-	2	1392	c.1101G>T	c.(1099-1101)CCG>CCT	p.P367P	LOC100129726_uc010ynx.1_5'Flank	NM_006887	NP_008818	P47974	TISD_HUMAN	zinc finger protein 36, C3H type-like 2	367					cell proliferation	nucleus	DNA binding|RNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Acute lymphoblastic leukemia(82;0.00323)|all_hematologic(82;0.00824)				TGCTGAGCTCCGGACCGAAGG	0.532000													9	16					0.00621372	0.00640283	1	0
EIF2AK3	9451	broad.mit.edu	37	2	88874652	88874652	+	Silent	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:88874652G>A	uc002stc.3	-	13	2551	c.2349C>T	c.(2347-2349)CAC>CAT	p.H783H		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	783	Cytoplasmic (Potential).|Protein kinase.				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						GTTCAAAGGAGTGCCCCTCAT	0.453000													109	204					0	0	0	0
CNGA3	1261	broad.mit.edu	37	2	99012576	99012576	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:99012576C>A	uc002syt.2	+	8	1360	c.943C>A	c.(943-945)CAC>AAC	p.H315N	CNGA3_uc002syu.2_Missense_Mutation_p.H297N|CNGA3_uc010fij.2_Missense_Mutation_p.H319N	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	315	Helical; (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						CATCATCATCCACTGGAATGC	0.478000													89	88					7.2861e-57	1.12863e-56	1	0
MAP4K4	9448	broad.mit.edu	37	2	102475479	102475479	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:102475479G>C	uc002tbg.2	+	14	1472	c.1417G>C	c.(1417-1419)GAA>CAA	p.E473Q	MAP4K4_uc002tbc.2_Missense_Mutation_p.E473Q|MAP4K4_uc002tbd.2_Missense_Mutation_p.E473Q|MAP4K4_uc002tbe.2_Missense_Mutation_p.E473Q|MAP4K4_uc002tbf.2_Missense_Mutation_p.E473Q|MAP4K4_uc010yvy.1_Missense_Mutation_p.E473Q|MAP4K4_uc002tbh.2_Missense_Mutation_p.E473Q|MAP4K4_uc002tbi.2_Missense_Mutation_p.E326Q|MAP4K4_uc010yvz.1_Missense_Mutation_p.E453Q|MAP4K4_uc002tbk.2_5'UTR|MAP4K4_uc002tbj.1_Missense_Mutation_p.E369Q	NM_145687	NP_663720	O95819	M4K4_HUMAN	mitogen-activated protein kinase kinase kinase	473					intracellular protein kinase cascade|regulation of JNK cascade|response to stress	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			stomach(1)|lung(1)|central_nervous_system(1)|skin(1)	4						GCGACAGCTAGAAGAGGAGCA	0.502000													27	165					0	0	0	0
IL1A	3552	broad.mit.edu	37	2	113535595	113535595	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:113535595G>A	uc002tig.2	-	6	1544	c.584C>T	c.(583-585)GCC>GTC	p.A195V		NM_000575	NP_000566	P01583	IL1A_HUMAN	interleukin 1, alpha proprotein	195					anti-apoptosis|apoptosis|cell proliferation|cellular response to heat|cytokine-mediated signaling pathway|fever generation|immune response|negative regulation of cell proliferation|positive regulation of angiogenesis|positive regulation of cell division|positive regulation of cytokine secretion|positive regulation of interleukin-2 biosynthetic process|positive regulation of mitosis|positive regulation vascular endothelial growth factor production|response to copper ion	cytosol|extracellular space	copper ion binding|cytokine activity|interleukin-1 receptor binding			lung(1)	1						TTCATCTTGGGCAGTCACATA	0.388000													14	58					0	0	0	0
ZRANB3	84083	broad.mit.edu	37	2	136107559	136107559	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:136107559C>A	uc002tum.2	-	5	703	c.586G>T	c.(586-588)GAA>TAA	p.E196*	ZRANB3_uc002tuk.2_5'UTR|ZRANB3_uc002tul.2_Nonsense_Mutation_p.E196*|ZRANB3_uc002tun.1_Nonsense_Mutation_p.E136*	NM_032143	NP_115519	Q5FWF4	ZRAB3_HUMAN	zinc finger, RAN-binding domain containing 3	196	Helicase ATP-binding.					intracellular	ATP binding|DNA binding|endonuclease activity|helicase activity|zinc ion binding			lung(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.135)		AATACCTCTTCAGGCCTTCCT	0.408000													11	36					4.3838e-07	4.995e-07	1	0
MBD5	55777	broad.mit.edu	37	2	149247953	149247953	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:149247953C>A	uc002twm.3	+	12	5041	c.4053C>A	c.(4051-4053)AGC>AGA	p.S1351R	MBD5_uc010zbs.1_Intron|MBD5_uc010fns.2_Missense_Mutation_p.S1351R|MBD5_uc002two.2_Missense_Mutation_p.S609R|MBD5_uc002twp.2_Missense_Mutation_p.S401R	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	1351						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		GTGTGCCTAGCCCTTCAGATG	0.408000													21	47					1.01871e-10	1.28423e-10	1	0
SLC4A10	57282	broad.mit.edu	37	2	162751316	162751316	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:162751316C>G	uc002ubx.3	+	11	1506	c.1322C>G	c.(1321-1323)CCC>CGC	p.P441R	SLC4A10_uc010fpa.1_Missense_Mutation_p.P453R|SLC4A10_uc010zcr.1_RNA|SLC4A10_uc002uby.3_Missense_Mutation_p.P411R|SLC4A10_uc010zcs.1_Missense_Mutation_p.P422R	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	441	Cytoplasmic (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						ATAGAGCCTCCCAAAAATGTT	0.328000													18	57					0	0	0	0
G6PC2	57818	broad.mit.edu	37	2	169764237	169764237	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:169764237C>A	uc002uem.2	+	5	808	c.716C>A	c.(715-717)GCC>GAC	p.A239D	G6PC2_uc002uen.2_3'UTR|G6PC2_uc010fpv.2_Missense_Mutation_p.A123D	NM_021176	NP_066999	Q9NQR9	G6PC2_HUMAN	islet-specific glucose-6-phosphatase-related	239	Lumenal (Potential).				gluconeogenesis|glucose homeostasis|glucose transport|regulation of insulin secretion|transmembrane transport	endoplasmic reticulum membrane|integral to membrane	glucose-6-phosphatase activity			pancreas(1)	1						GTGCCCATAGCCAAAAAGTGG	0.512000													30	59					8.16721e-17	1.17311e-16	1	0
LRP2	4036	broad.mit.edu	37	2	170129512	170129512	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:170129512C>A	uc002ues.2	-	15	2254	c.2041G>T	c.(2041-2043)GAT>TAT	p.D681Y	LRP2_uc010zdf.1_Missense_Mutation_p.D612Y	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	681	EGF-like 3.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CCATCATTATCTGTTCTGTGG	0.463000													48	116					8.00217e-19	1.17069e-18	1	0
MYO3B	140469	broad.mit.edu	37	2	171259494	171259494	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:171259494G>A	uc002ufy.2	+	19	2409	c.2266G>A	c.(2266-2268)GCT>ACT	p.A756T	MYO3B_uc002ufv.2_Missense_Mutation_p.A743T|MYO3B_uc010fqb.1_Missense_Mutation_p.A743T|MYO3B_uc002ufz.2_Missense_Mutation_p.A756T|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	756	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						GCATGTTTTTGCTCTTGAGCA	0.398000													5	31					0	0	0	0
ZNF385B	151126	broad.mit.edu	37	2	180409678	180409678	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:180409678G>A	uc002unn.3	-	4	876	c.272C>T	c.(271-273)ACT>ATT	p.T91I	ZNF385B_uc002unj.2_5'UTR|ZNF385B_uc002unk.2_RNA|ZNF385B_uc002unl.2_5'UTR|ZNF385B_uc002unm.2_Missense_Mutation_p.T15I	NM_152520	NP_689733	Q569K4	Z385B_HUMAN	zinc finger protein 385B isoform 1	91						nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			Epithelial(96;0.174)|OV - Ovarian serous cystadenocarcinoma(117;0.201)			AGGAAGGGTAGTAGTGTGGCA	0.448000													37	88					0	0	0	0
ITGA4	3676	broad.mit.edu	37	2	182395331	182395331	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:182395331G>C	uc002unu.2	+	24	3382	c.2619G>C	c.(2617-2619)TTG>TTC	p.L873F	ITGA4_uc002unv.2_Missense_Mutation_p.L118F	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	873	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	TGCAGACCTTGAAAGGCATAG	0.413000													23	48					0	0	0	0
COL3A1	1281	broad.mit.edu	37	2	189849935	189849935	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:189849935C>A	uc002uqj.1	+	3	412	c.295C>A	c.(295-297)CCT>ACT	p.P99T		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	99					axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	TACTCGCCCTCCTAATGGTCA	0.343000													22	36					6.32553e-13	8.4222e-13	1	0
GTF3C3	9330	broad.mit.edu	37	2	197640813	197640813	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:197640813C>G	uc002uts.2	-	12	1706	c.1616G>C	c.(1615-1617)CGT>CCT	p.R539P	GTF3C3_uc010zgu.1_Missense_Mutation_p.R510P	NM_012086	NP_036218	Q9Y5Q9	TF3C3_HUMAN	general transcription factor IIIC, polypeptide	539						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(3)|breast(3)|pancreas(1)	7						CAGAGTAGAACGATGAAGCAA	0.323000													23	51					0	0	0	0
ABI2	10152	broad.mit.edu	37	2	204255845	204255845	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:204255845T>A	uc002vaa.2	+	5	792	c.557T>A	c.(556-558)ATG>AAG	p.M186K	ABI2_uc010zig.1_RNA|ABI2_uc002uzz.2_Missense_Mutation_p.M180K|ABI2_uc010zih.1_Intron|ABI2_uc010zii.1_Missense_Mutation_p.M180K|ABI2_uc010zij.1_Missense_Mutation_p.M124K|ABI2_uc002vab.2_Missense_Mutation_p.M135K|ABI2_uc010zik.1_Missense_Mutation_p.M21K|ABI2_uc010zil.1_Missense_Mutation_p.M21K|ABI2_uc010zim.1_Missense_Mutation_p.M21K|ABI2_uc002vac.2_Missense_Mutation_p.M21K	NM_005759	NP_005750	Q9NYB9	ABI2_HUMAN	abl interactor 2	186	Pro-rich.				actin polymerization or depolymerization|cell migration|peptidyl-tyrosine phosphorylation	cytoskeleton|cytosol|filopodium|lamellipodium	cytoskeletal adaptor activity|DNA binding|kinase binding|proline-rich region binding|SH3 domain binding|ubiquitin protein ligase binding				0						AGTCCCCCTATGTCAGGGAAA	0.388000													5	22					0	0	0	0
ERBB4	2066	broad.mit.edu	37	2	212530075	212530075	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:212530075T>A	uc002veg.1	-	15	1942	c.1844A>T	c.(1843-1845)CAC>CTC	p.H615L	ERBB4_uc002veh.1_Missense_Mutation_p.H615L|ERBB4_uc010zji.1_Missense_Mutation_p.H615L|ERBB4_uc010zjj.1_Missense_Mutation_p.H615L|ERBB4_uc010fut.1_Missense_Mutation_p.H615L	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	615	Extracellular (Potential).|Cys-rich.				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		ATGGCATGGGTGGCACTCCCG	0.473000										TSP Lung(8;0.080)			14	43					0	0	0	0
SPAG16	79582	broad.mit.edu	37	2	214794821	214794821	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:214794821T>C	uc002veq.2	+	12	1444	c.1352T>C	c.(1351-1353)GTG>GCG	p.V451A	SPAG16_uc010fuz.1_Missense_Mutation_p.V302A|SPAG16_uc002ver.2_Missense_Mutation_p.V397A|SPAG16_uc010zjk.1_Missense_Mutation_p.V357A	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1	451	WD 3.				cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		GGCAATTTTGTGGCTTCCTCC	0.423000													28	41					0	0	0	0
CUL3	8452	broad.mit.edu	37	2	225368493	225368493	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:225368493A>C	uc002vny.2	-	9	1637	c.1253T>G	c.(1252-1254)CTT>CGT	p.L418R	CUL3_uc010zls.1_Missense_Mutation_p.L352R|CUL3_uc010fwy.1_Missense_Mutation_p.L424R	NM_003590	NP_003581	Q13618	CUL3_HUMAN	cullin 3	418					cell cycle arrest|cell migration|cyclin catabolic process|cytokinesis|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|mitotic anaphase|negative regulation of Rho protein signal transduction|positive regulation of cell proliferation|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|Golgi apparatus|nucleus|polar microtubule	ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|kidney(1)	4		all_lung(227;0.00877)|Lung NSC(271;0.011)|Renal(207;0.0112)|all_hematologic(139;0.138)		Epithelial(121;1.58e-11)|all cancers(144;1.43e-08)|Lung(261;0.00863)|LUSC - Lung squamous cell carcinoma(224;0.00902)		AAACCTAAAAAGGACCATTGC	0.303000													4	13					0	0	0	0
DOCK10	55619	broad.mit.edu	37	2	225717743	225717743	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:225717743G>T	uc010fwz.1	-	17	2224	c.1985C>A	c.(1984-1986)ACA>AAA	p.T662K	DOCK10_uc002vob.2_Missense_Mutation_p.T656K	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	662							GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		ACAATACTTTGTTGAATCGTA	0.368000													22	38					1.28384e-07	1.48424e-07	1	0
COL6A3	1293	broad.mit.edu	37	2	238249123	238249123	+	Silent	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:238249123G>A	uc002vwl.2	-	38	8721	c.8436C>T	c.(8434-8436)TTC>TTT	p.F2812F	COL6A3_uc002vwo.2_Silent_p.F2606F|COL6A3_uc010znj.1_Silent_p.F2205F|COL6A3_uc002vwj.2_Silent_p.F193F	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2812	VWFA 12.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		ACAGCCTCCCGAAGCGCATCA	0.547000													20	35					0	0	0	0
COL6A3	1293	broad.mit.edu	37	2	238283189	238283189	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr2:238283189G>T	uc002vwl.2	-	8	3830	c.3545C>A	c.(3544-3546)CCG>CAG	p.P1182Q	COL6A3_uc002vwo.2_Missense_Mutation_p.P976Q|COL6A3_uc010znj.1_Missense_Mutation_p.P575Q|COL6A3_uc002vwq.2_Missense_Mutation_p.P976Q|COL6A3_uc002vwr.2_Missense_Mutation_p.P775Q	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1182	Nonhelical region.|VWFA 6.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GGCAAAGTCCGGGATGAAGGA	0.622000													23	39					3.8784e-16	5.47132e-16	1	0
SIGLEC1	6614	broad.mit.edu	37	20	3679898	3679898	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr20:3679898G>C	uc002wja.2	-	7	1737	c.1737C>G	c.(1735-1737)GAC>GAG	p.D579E	SIGLEC1_uc002wiz.3_Missense_Mutation_p.D579E	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	579	Ig-like C2-type 5.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						CACTGTGGCCGTCCCGGGCCC	0.692000													7	15					0	0	0	0
MAVS	57506	broad.mit.edu	37	20	3845384	3845384	+	Silent	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr20:3845384C>T	uc002wjw.3	+	6	1276	c.1107C>T	c.(1105-1107)CTC>CTT	p.L369L	MAVS_uc002wjx.3_Silent_p.L228L|MAVS_uc002wjy.3_Silent_p.L67L	NM_020746	NP_065797	Q7Z434	MAVS_HUMAN	virus-induced signaling adapter	369	Cytoplasmic (Probable).				activation of innate immune response|cellular response to exogenous dsRNA|defense response to bacterium|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of chemokine (C-C motif) ligand 5 production|positive regulation of defense response to virus by host|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interleukin-8 production|positive regulation of IP-10 production|positive regulation of protein import into nucleus, translocation|positive regulation of protein phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription factor import into nucleus|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|positive regulation of type I interferon-mediated signaling pathway|response to virus	integral to membrane|mitochondrial outer membrane	CARD domain binding|protein kinase binding|signal transducer activity				0						GCATGGTGCTCACCAAGGTGT	0.592000													25	63					0	0	0	0
C20orf4	25980	broad.mit.edu	37	20	34828211	34828211	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr20:34828211A>T	uc002xfc.1	+	2	514	c.421A>T	c.(421-423)AGC>TGC	p.S141C	C20orf4_uc002xfd.1_Missense_Mutation_p.S141C|C20orf4_uc002xfe.1_Missense_Mutation_p.S141C	NM_015511	NP_056326	Q9Y312	CT004_HUMAN	hypothetical protein LOC25980	141											0	Breast(12;0.0162)	Myeloproliferative disorder(115;0.0393)				CAACTTCATCAGCGAAGCCAC	0.567000													78	81					0	0	0	0
NCOA3	8202	broad.mit.edu	37	20	46279860	46279860	+	Silent	SNP	G	A	A	rs151060280	byFrequency	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr20:46279860G>A	uc002xtk.2	+	20	3991	c.3786G>A	c.(3784-3786)CAG>CAA	p.Q1262Q	NCOA3_uc010ght.1_Silent_p.Q1253Q|NCOA3_uc002xtl.2_Silent_p.Q1258Q|NCOA3_uc002xtm.2_Silent_p.Q1257Q|NCOA3_uc002xtn.2_Silent_p.Q1261Q|NCOA3_uc010zyc.1_Silent_p.Q1057Q	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	1262	Poly-Gln.|Acetyltransferase.				androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						agcagcagcagcagcaacagc	0.308000													5	71					0	0	0	0
PTPN1	5770	broad.mit.edu	37	20	49196356	49196356	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr20:49196356C>G	uc002xvl.2	+	8	1155	c.981C>G	c.(979-981)TTC>TTG	p.F327L	PTPN1_uc010zys.1_Missense_Mutation_p.F254L	NM_002827	NP_002818	P18031	PTN1_HUMAN	protein tyrosine phosphatase, non-receptor type	327					blood coagulation|interferon-gamma-mediated signaling pathway|negative regulation of insulin receptor signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytosol|endoplasmic reticulum membrane	protein tyrosine phosphatase activity|zinc ion binding				0		Lung NSC(126;0.163)			Clodronate(DB00720)|Tiludronate(DB01133)	GCAGGGAGTTCTTCCCAAATC	0.572000											OREG0026029	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	125					0	0	0	0
Unknown	0	broad.mit.edu	37	21	10862797	10862797	+	IGR	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr21:10862797G>T								None (None upstream) : TPTE (43946 downstream)																							CTGAGGTGAAGAAGCCTGGGG	0.572000													55	146					1.17673e-23	1.77634e-23	1	0
LIPI	149998	broad.mit.edu	37	21	15561702	15561702	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr21:15561702C>A	uc002yjm.2	-	2	158	c.148G>T	c.(148-150)GTA>TTA	p.V50L	LIPI_uc010gkw.1_5'UTR	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	29					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		GAATCCTTTACACTTAGCTGA	0.358000													22	36					1.22574e-08	1.46717e-08	1	0
NCAM2	4685	broad.mit.edu	37	21	22696776	22696776	+	Silent	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr21:22696776C>T	uc002yld.1	+	6	942	c.693C>T	c.(691-693)TCC>TCT	p.S231S	NCAM2_uc011acb.1_Silent_p.S89S|NCAM2_uc011acc.1_Silent_p.S256S	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	231	Ig-like C2-type 3.|Extracellular (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		TGACATTTTCCTGCAGGGCCT	0.493000													17	56					0	0	0	0
KRTAP11-1	337880	broad.mit.edu	37	21	32253791	32253791	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr21:32253791C>A	uc002yov.2	-	1	84	c.53G>T	c.(52-54)CGC>CTC	p.R18L		NM_175858	NP_787054	Q8IUC1	KR111_HUMAN	keratin associated protein 11-1	18						keratin filament	structural molecule activity			pancreas(1)	1						AACAATGCAGCGTCCTCCAAT	0.547000													34	59					2.48696e-23	3.70697e-23	1	0
FTCD	10841	broad.mit.edu	37	21	47570433	47570433	+	Missense_Mutation	SNP	G	C	C	rs149667449	byFrequency	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr21:47570433G>C	uc002zif.2	-	6	687	c.643C>G	c.(643-645)CGT>GGT	p.R215G	FTCD_uc002zig.2_Missense_Mutation_p.R215G|FTCD_uc002zih.2_Missense_Mutation_p.R215G|FTCD_uc010gqf.2_Missense_Mutation_p.R215G|FTCD_uc010gqg.1_Missense_Mutation_p.R84G	NM_006657	NP_006648	O95954	FTCD_HUMAN	formiminotransferase cyclodeaminase	215	Formiminotransferase C-subdomain (By similarity).				folic acid-containing compound metabolic process|histidine catabolic process	centriole|cytosol|Golgi apparatus	folic acid binding|formimidoyltetrahydrofolate cyclodeaminase activity|glutamate formimidoyltransferase activity			pancreas(1)|skin(1)	2	Breast(49;0.214)			Colorectal(79;0.235)	L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Tetrahydrofolic acid(DB00116)	TTCTTCAGACGTCCTGGCTGC	0.577000													16	46					0	0	0	0
Unknown	0	broad.mit.edu	37	22	18845990	18845990	+	RNA	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr22:18845990C>T	uc002zoe.2	+	5		c.2352C>T			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		ACCTCCATCCCGTCCTGCGCA	0.582000													3	14					0	0	0	0
Unknown	0	broad.mit.edu	37	22	18845998	18845998	+	RNA	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr22:18845998G>A	uc002zoe.2	+	5		c.2360G>A			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		CCCGTCCTGCGCAGGCCGACA	0.607000													3	14					0	0	0	0
LOC96610	96610	broad.mit.edu	37	22	23162156	23162156	+	RNA	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr22:23162156C>A	uc011aim.1	+	283		c.12932C>A								Parts of antibodies, mostly variable regions.												0						TCTCTGGCTCCAACTCGGGGA	0.597000													17	58					1.5739e-10	1.97362e-10	1	0
CABIN1	23523	broad.mit.edu	37	22	24515613	24515613	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr22:24515613A>G	uc002zzi.1	+	28	4707	c.4580A>G	c.(4579-4581)TAT>TGT	p.Y1527C	CABIN1_uc002zzj.1_Missense_Mutation_p.Y1448C|CABIN1_uc002zzl.1_Missense_Mutation_p.Y1527C	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	1527					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						CCCCAGCACTATAAGAGTCTC	0.647000													80	141					0	0	0	0
ASPHD2	57168	broad.mit.edu	37	22	26838460	26838460	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr22:26838460G>C	uc003acg.2	+	3	1319	c.922G>C	c.(922-924)GGG>CGG	p.G308R		NM_020437	NP_065170	Q6ICH7	ASPH2_HUMAN	aspartate beta-hydroxylase domain containing 2	308	Lumenal (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity			ovary(1)	1						GCTGGTGGTGGGGGGAGAGCC	0.552000													51	140					0	0	0	0
LARGE	9215	broad.mit.edu	37	22	33733754	33733754	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr22:33733754C>A	uc003and.3	-	11	1744	c.1165G>T	c.(1165-1167)GTG>TTG	p.V389L	LARGE_uc011amd.1_Missense_Mutation_p.V188L|LARGE_uc003ane.3_Missense_Mutation_p.V389L|LARGE_uc010gwp.2_Intron|LARGE_uc011ame.1_Missense_Mutation_p.V321L|LARGE_uc011amf.1_Missense_Mutation_p.V389L|LARGE_uc010gwq.1_RNA	NM_004737	NP_004728	O95461	LARGE_HUMAN	like-glycosyltransferase	389	Lumenal (Potential).				glycosphingolipid biosynthetic process|muscle cell homeostasis|N-acetylglucosamine metabolic process|protein glycosylation	integral to Golgi membrane	acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(1;0.219)				TTGTTCTTCACCCGGAGCTTC	0.557000													11	27					0.000151284	0.000162237	1	0
MYH9	4627	broad.mit.edu	37	22	36689419	36689419	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr22:36689419C>G	uc003apg.2	-	30	4282	c.4051G>C	c.(4051-4053)GCC>CCC	p.A1351P		NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	1351	Potential.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						TTGTGCTTGGCCTCCTCCTCC	0.652000			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				31	56					0	0	0	0
CYP2D7P1	1564	broad.mit.edu	37	22	42538867	42538867	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr22:42538867G>A	uc003bci.2	-	3	478	c.97C>T	c.(97-99)CGC>TGC	p.R33C	CYP2D7P1_uc003bcg.2_5'Flank|CYP2D7P1_uc003bch.2_5'Flank|CYP2D7P1_uc010gyv.2_Intron|CYP2D7P1_uc010gyw.2_RNA|CYP2D7P1_uc010gyx.1_Missense_Mutation_p.R33C	NR_002570				SubName: Full=Cytochrome P450 2D6;          EC=1.14.14.1;												0						GGCCCATAGCGCGACAGGAAC	0.687000													10	19					0	0	0	0
GADL1	339896	broad.mit.edu	37	3	30875411	30875411	+	Silent	SNP	G	T	T	rs139652704	byFrequency	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr3:30875411G>T	uc003cep.2	-	11	1031	c.984C>A	c.(982-984)GCC>GCA	p.A328A	GADL1_uc003ceq.1_Silent_p.A328A	NM_207359	NP_997242	Q6ZQY3	GADL1_HUMAN	glutamate decarboxylase-like 1	328					carboxylic acid metabolic process		carboxy-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	GTGGGTTCCAGGCCACAGAGT	0.448000													15	19					3.52763e-06	3.90677e-06	1	0
CCR2	729230	broad.mit.edu	37	3	46399710	46399710	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr3:46399710G>T	uc003cpn.3	+	2	1177	c.692G>T	c.(691-693)CGG>CTG	p.R231L	CCR2_uc003cpm.3_Missense_Mutation_p.R231L	NM_001123041	NP_001116513	P41597	CCR2_HUMAN	chemokine (C-C motif) receptor 2 isoform A	231	Cytoplasmic (Potential).				astrocyte cell migration|blood vessel remodeling|cellular defense response|chemokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response|interspecies interaction between organisms|JAK-STAT cascade|monocyte extravasation|negative regulation of adenylate cyclase activity|negative regulation of angiogenesis|negative regulation of eosinophil degranulation|negative regulation of type 2 immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of immune complex clearance by monocytes and macrophages|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-2 production|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|positive regulation of T cell extravasation|positive regulation of T-helper 1 type immune response|positive regulation of tumor necrosis factor biosynthetic process|regulation of vascular endothelial growth factor production|T-helper 17 cell chemotaxis	cytosol|dendrite|integral to plasma membrane|perikaryon|perinuclear region of cytoplasm|soluble fraction	C-C chemokine receptor activity|CCR2 chemokine receptor binding|protein homodimerization activity			lung(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0174)|Kidney(197;0.0206)		ACCCTGCTTCGGTGTCGAAAC	0.453000													103	142					1.26289e-39	1.931e-39	1	0
RNF123	63891	broad.mit.edu	37	3	49738099	49738099	+	Silent	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr3:49738099C>T	uc003cxh.2	+	15	1320	c.1234C>T	c.(1234-1236)CTG>TTG	p.L412L	RNF123_uc010hky.1_Silent_p.L74L|RNF123_uc003cxi.2_RNA	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	412						cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		TATCGCCATCCTGAGGCATGA	0.607000													25	38					0	0	0	0
ACOX2	8309	broad.mit.edu	37	3	58520802	58520802	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr3:58520802C>T	uc003dkl.2	-	2	207	c.32G>A	c.(31-33)GGG>GAG	p.G11E		NM_003500	NP_003491	Q99424	ACOX2_HUMAN	acyl-Coenzyme A oxidase 2	11					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA 24-hydroxylase activity|acyl-CoA dehydrogenase activity|pristanoyl-CoA oxidase activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000194)|Kidney(10;0.00255)|KIRC - Kidney renal clear cell carcinoma(10;0.00268)|OV - Ovarian serous cystadenocarcinoma(275;0.156)		CCAGGTATCCCCCAATGACAC	0.572000													61	106					0	0	0	0
CNTN3	5067	broad.mit.edu	37	3	74350820	74350820	+	Silent	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr3:74350820C>A	uc003dpm.1	-	14	2003	c.1923G>T	c.(1921-1923)GTG>GTT	p.V641V		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	641	Fibronectin type-III 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		TTTGCCAACCCACGGAGAAAG	0.448000													25	19					4.26978e-12	5.56009e-12	1	0
SI	6476	broad.mit.edu	37	3	164758778	164758778	+	Silent	SNP	A	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr3:164758778A>G	uc003fei.2	-	18	2171	c.2109T>C	c.(2107-2109)TTT>TTC	p.F703F		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	703	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	GGGCTTTATAAAACAGAGTGT	0.348000										HNSCC(35;0.089)			27	74					0	0	0	0
SI	6476	broad.mit.edu	37	3	164781266	164781266	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr3:164781266A>G	uc003fei.2	-	8	933	c.871T>C	c.(871-873)TCA>CCA	p.S291P		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	291	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	ACACCGAATGACTTTCCAGAT	0.259000										HNSCC(35;0.089)			8	42					0	0	0	0
PIK3CA	5290	broad.mit.edu	37	3	178951964	178951964	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr3:178951964G>C	uc003fjk.2	+	21	3176	c.3019G>C	c.(3019-3021)GGC>CGC	p.G1007R		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	1007	PI3K/PI4K.		G -> R (in cancer).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.G1007R(6)|p.G1007D(2)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			AATGATGCTTGGCTCTGGAAT	0.378000		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			19	43					0	0	0	0
CCDC39	339829	broad.mit.edu	37	3	180349272	180349272	+	Silent	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr3:180349272G>T	uc010hxe.2	-	14	2098	c.1983C>A	c.(1981-1983)GCC>GCA	p.A661A	CCDC39_uc003fkn.2_RNA	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	661					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			TTACATAATAGGCCTGTGTTT	0.328000													11	40					1.58986e-06	1.769e-06	1	0
BOD1L	259282	broad.mit.edu	37	4	13602128	13602128	+	Silent	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr4:13602128G>T	uc003gmz.1	-	10	6513	c.6396C>A	c.(6394-6396)GCC>GCA	p.A2132A	BOD1L_uc010idr.1_Silent_p.A1469A	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	2132							DNA binding			ovary(5)|breast(1)	6						CACTTCTGCTGGCAGTGAGTT	0.473000													14	35					1.5842e-08	1.88671e-08	1	0
ATP8A1	10396	broad.mit.edu	37	4	42588439	42588439	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr4:42588439C>A	uc003gwr.2	-	9	881	c.649G>T	c.(649-651)GGC>TGC	p.G217C	ATP8A1_uc003gws.2_Missense_Mutation_p.G217C|ATP8A1_uc011byz.1_Missense_Mutation_p.G217C	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	217	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	TCAATTCTGCCAGAAATCCTC	0.343000													14	35					0.00316338	0.00328825	1	0
LPHN3	23284	broad.mit.edu	37	4	62812713	62812713	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr4:62812713C>G	uc010ihh.2	+	13	2470	c.2297C>G	c.(2296-2298)ACG>AGG	p.T766R	LPHN3_uc003hcq.3_Missense_Mutation_p.T766R|LPHN3_uc003hct.2_Missense_Mutation_p.T159R	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	753	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						AAGTTGGGAACGGAAGCTTTG	0.403000													59	140					0	0	0	0
PROL1	58503	broad.mit.edu	37	4	71275449	71275449	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr4:71275449T>G	uc003hfi.2	+	3	578	c.404T>G	c.(403-405)CTT>CGT	p.L135R		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	135	Pro-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				GCTATTTACCTTCCTATCTCT	0.433000													40	68					0	0	0	0
ADAMTS3	9508	broad.mit.edu	37	4	73175117	73175117	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr4:73175117G>A	uc003hgk.1	-	15	2213	c.2176C>T	c.(2176-2178)CTT>TTT	p.L726F	ADAMTS3_uc003hgl.2_Missense_Mutation_p.L67F	NM_014243	NP_055058	O15072	ATS3_HUMAN	ADAM metallopeptidase with thrombospondin type 1	726	Spacer.				collagen catabolic process|collagen fibril organization|proteolysis	proteinaceous extracellular matrix	heparin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2			Epithelial(6;4.97e-05)|OV - Ovarian serous cystadenocarcinoma(6;5.66e-05)|all cancers(17;0.000486)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			ATCTTACCAAGCTTCCTGGGA	0.408000													18	38					0	0	0	0
FGF5	2250	broad.mit.edu	37	4	81188293	81188293	+	Silent	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr4:81188293G>T	uc003hmd.2	+	1	552	c.315G>T	c.(313-315)CCG>CCT	p.P105P	FGF5_uc003hme.2_Silent_p.P105P	NM_004464	NP_004455	P12034	FGF5_HUMAN	fibroblast growth factor 5 isoform 1 precursor	105					cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	fibroblast growth factor receptor binding|growth factor activity			ovary(1)|breast(1)	2						AGATCTACCCGGATGGCAAAG	0.582000													29	58					3.73988e-18	5.43774e-18	1	0
DNAJB14	79982	broad.mit.edu	37	4	100830007	100830007	+	Silent	SNP	T	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr4:100830007T>C	uc003hvl.2	-	4	649	c.498A>G	c.(496-498)AAA>AAG	p.K166K	DNAJB14_uc003hvk.2_Silent_p.K81K|DNAJB14_uc010ili.2_Silent_p.K99K	NM_001031723	NP_001026893	Q8TBM8	DJB14_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 14	166	J.				protein folding	integral to membrane	heat shock protein binding|unfolded protein binding				0				OV - Ovarian serous cystadenocarcinoma(123;4.59e-09)		GGTCATACTGTTTTCGCTTTT	0.348000													21	40					0	0	0	0
ANK2	287	broad.mit.edu	37	4	114290872	114290872	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr4:114290872C>G	uc003ibe.3	+	43	11621	c.11521C>G	c.(11521-11523)CCG>GCG	p.P3841A	ANK2_uc003ibd.3_Missense_Mutation_p.P1747A|ANK2_uc003ibf.3_Missense_Mutation_p.P1756A|ANK2_uc011cgc.1_Missense_Mutation_p.P932A|ANK2_uc003ibg.3_Missense_Mutation_p.P740A|ANK2_uc003ibh.3_Missense_Mutation_p.P430A|ANK2_uc011cgd.1_Missense_Mutation_p.P1143A	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	3808					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		GGAGAGCTCTCCGCGGAAAAC	0.537000													24	40					0	0	0	0
TRPC3	7222	broad.mit.edu	37	4	122800901	122800901	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr4:122800901C>G	uc003ieg.2	-	12	2830	c.2756G>C	c.(2755-2757)AGA>ACA	p.R919T	TRPC3_uc010inr.2_Missense_Mutation_p.R791T|TRPC3_uc003ief.2_Missense_Mutation_p.R846T|TRPC3_uc011cgl.1_Missense_Mutation_p.R583T	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	834	Extracellular (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						TCATTCACATCTCAGCATGCT	0.363000													14	35					0	0	0	0
FAT4	79633	broad.mit.edu	37	4	126408505	126408505	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr4:126408505G>T	uc003ifj.3	+	16	12822	c.12822G>T	c.(12820-12822)AAG>AAT	p.K4274N	FAT4_uc011cgp.1_Missense_Mutation_p.K2515N|FAT4_uc003ifi.1_Missense_Mutation_p.K1752N	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4274	Laminin G-like 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TACAGATTAAGAATGGCAAAG	0.318000													7	17					0.00198382	0.00207121	1	0
PCDH10	57575	broad.mit.edu	37	4	134073619	134073619	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr4:134073619C>A	uc003iha.2	+	1	3150	c.2324C>A	c.(2323-2325)GCC>GAC	p.A775D	PCDH10_uc003igz.2_Missense_Mutation_p.A775D	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	775	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		GGCCGCCAAGCCCGGGCGCGC	0.592000													13	26					0.00010058	0.000108352	1	0
CTNND2	1501	broad.mit.edu	37	5	10992676	10992676	+	Silent	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr5:10992676G>T	uc003jfa.1	-	19	3343	c.3198C>A	c.(3196-3198)CCC>CCA	p.P1066P	CTNND2_uc010itt.2_Silent_p.P975P|CTNND2_uc011cmy.1_Silent_p.P729P|CTNND2_uc011cmz.1_Silent_p.P633P|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.P658P	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	1066					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						AGCGGTTGTTGGGAGACACGC	0.592000													14	57					3.27435e-08	3.8608e-08	1	0
CTNND2	1501	broad.mit.edu	37	5	11397162	11397162	+	Missense_Mutation	SNP	G	A	A	rs141302945		TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr5:11397162G>A	uc003jfa.1	-	6	738	c.593C>T	c.(592-594)ACG>ATG	p.T198M	CTNND2_uc010itt.2_Missense_Mutation_p.T107M|CTNND2_uc011cmy.1_Intron|CTNND2_uc011cmz.1_Translation_Start_Site|CTNND2_uc010itu.1_Intron	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	198					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						GCTCTGGCCCGTAGCTCGGGC	0.607000													41	106					0	0	0	0
NPR3	4883	broad.mit.edu	37	5	32783095	32783095	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr5:32783095C>G	uc003jhv.2	+	6	1605	c.1387C>G	c.(1387-1389)CGA>GGA	p.R463G	NPR3_uc010iuo.2_Missense_Mutation_p.R247G|NPR3_uc011cnz.1_Missense_Mutation_p.R247G|NPR3_uc003jhu.2_Missense_Mutation_p.R463G	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	463	Extracellular (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	AGATGAAAACCGAATTGTAGA	0.383000													6	19					0	0	0	0
RAI14	26064	broad.mit.edu	37	5	34823148	34823148	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr5:34823148C>T	uc003jir.2	+	15	1397	c.1201C>T	c.(1201-1203)CCT>TCT	p.P401S	RAI14_uc010iur.2_Missense_Mutation_p.P372S|RAI14_uc011coj.1_Missense_Mutation_p.P401S|RAI14_uc003jis.2_Missense_Mutation_p.P404S|RAI14_uc003jit.2_Missense_Mutation_p.P401S|RAI14_uc011cok.1_Missense_Mutation_p.P393S	NM_015577	NP_056392	Q9P0K7	RAI14_HUMAN	retinoic acid induced 14 isoform a	401						cell cortex|cytoskeleton	protein binding			ovary(1)	1	all_lung(31;0.000191)					CCTGGGAAAACCTGGTGAAAC	0.453000													25	53					0	0	0	0
GRIA1	2890	broad.mit.edu	37	5	153056596	153056596	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr5:153056596G>T	uc003lva.3	+	7	1269	c.904G>T	c.(904-906)GAG>TAG	p.E302*	GRIA1_uc003luy.3_Nonsense_Mutation_p.E302*|GRIA1_uc003luz.3_Nonsense_Mutation_p.E207*|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Nonsense_Mutation_p.E222*|GRIA1_uc011dcx.1_Nonsense_Mutation_p.E233*|GRIA1_uc011dcy.1_Nonsense_Mutation_p.E312*|GRIA1_uc011dcz.1_Nonsense_Mutation_p.E312*|GRIA1_uc010jia.1_Nonsense_Mutation_p.E282*	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	302	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GGTGATGGCTGAGGCTTTCCA	0.552000													17	23					1.67942e-08	1.99011e-08	1	0
GRIA1	2890	broad.mit.edu	37	5	153056599	153056599	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr5:153056599G>C	uc003lva.3	+	7	1272	c.907G>C	c.(907-909)GCT>CCT	p.A303P	GRIA1_uc003luy.3_Missense_Mutation_p.A303P|GRIA1_uc003luz.3_Missense_Mutation_p.A208P|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.A223P|GRIA1_uc011dcx.1_Missense_Mutation_p.A234P|GRIA1_uc011dcy.1_Missense_Mutation_p.A313P|GRIA1_uc011dcz.1_Missense_Mutation_p.A313P|GRIA1_uc010jia.1_Missense_Mutation_p.A283P	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	303	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GATGGCTGAGGCTTTCCAGAG	0.562000													15	21					0	0	0	0
RARS	5917	broad.mit.edu	37	5	167921571	167921571	+	Silent	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr5:167921571C>T	uc003lzx.2	+	5	536	c.495C>T	c.(493-495)CAC>CAT	p.H165H	RARS_uc011deo.1_5'UTR	NM_002887	NP_002878	P54136	SYRC_HUMAN	arginyl-tRNA synthetase	165					arginyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	arginine-tRNA ligase activity|ATP binding|protein binding			ovary(2)|skin(1)	3	Renal(175;0.000159)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0208)|all_neural(177;0.0227)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0693)|Epithelial(171;0.131)|OV - Ovarian serous cystadenocarcinoma(192;0.156)		TTAATGTCCACTTAAGAAAGG	0.358000													8	28					0	0	0	0
NSD1	64324	broad.mit.edu	37	5	176687055	176687055	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr5:176687055G>T	uc003mfr.3	+	14	5170	c.5032G>T	c.(5032-5034)GGG>TGG	p.G1678W	NSD1_uc003mft.3_Missense_Mutation_p.G1409W|NSD1_uc003mfs.1_Missense_Mutation_p.G1575W|NSD1_uc011dfx.1_Missense_Mutation_p.G1326W	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	1678					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		CCTGGCTGCTGGGTCAAAGAT	0.488000			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			13	30					1.49906e-05	1.6448e-05	1	0
GCNT2	2651	broad.mit.edu	37	6	10529410	10529410	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr6:10529410C>T	uc010joo.2	+	3	817	c.266C>T	c.(265-267)TCT>TTT	p.S89F	GCNT2_uc010jol.2_Intron|GCNT2_uc010jom.2_Intron|GCNT2_uc010jop.2_Intron|GCNT2_uc003mza.2_Intron|GCNT2_uc003mzc.3_Missense_Mutation_p.S88F|GCNT2_uc010jon.2_Missense_Mutation_p.S88F	NM_145649	NP_663624	Q8N0V5	GNT2A_HUMAN	glucosaminyl (N-acetyl) transferase 2,	89	Lumenal (Potential).					Golgi membrane|integral to membrane	N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(2)	2	Ovarian(93;0.107)|Breast(50;0.148)	all_hematologic(90;0.107)		KIRC - Kidney renal clear cell carcinoma(1;0.099)|Kidney(1;0.119)		GAAACACTCTCTGAAGAAGAG	0.428000													31	43					0	0	0	0
PEX6	5190	broad.mit.edu	37	6	42936617	42936617	+	Silent	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr6:42936617G>A	uc003otf.2	-	6	1567	c.1474C>T	c.(1474-1476)CTG>TTG	p.L492L	PEX6_uc010jya.2_RNA	NM_000287	NP_000278	Q13608	PEX6_HUMAN	peroxisomal biogenesis factor 6	492					protein import into peroxisome matrix, translocation|protein stabilization	cytosol|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)	1			all cancers(41;0.00235)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.0562)			CTCACCTTCAGTAAGTGGAGC	0.587000													29	15					0	0	0	0
COL12A1	1303	broad.mit.edu	37	6	75825753	75825753	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr6:75825753C>T	uc003phs.2	-	48	7706	c.7540G>A	c.(7540-7542)GAT>AAT	p.D2514N	COL12A1_uc003pht.2_Missense_Mutation_p.D1350N	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	2514	Nonhelical region (NC3).				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						GTGTAGCCATCCAAATAAATG	0.328000													4	30					0	0	0	0
ARMC2	84071	broad.mit.edu	37	6	109215694	109215694	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr6:109215694G>T	uc003pss.3	+	6	870	c.696G>T	c.(694-696)AGG>AGT	p.R232S	ARMC2_uc011eao.1_Missense_Mutation_p.R67S	NM_032131	NP_115507	Q8NEN0	ARMC2_HUMAN	armadillo repeat containing 2	232							binding				0		all_cancers(87;1.14e-07)|Acute lymphoblastic leukemia(125;2.3e-10)|all_hematologic(75;3.3e-08)|all_epithelial(87;0.000111)|Colorectal(196;0.03)|all_lung(197;0.11)		Epithelial(106;0.000197)|BRCA - Breast invasive adenocarcinoma(108;0.000236)|all cancers(137;0.000279)|OV - Ovarian serous cystadenocarcinoma(136;0.00434)		GACATGCGAGGGCCTCATCAT	0.488000													22	56					7.41877e-09	8.92512e-09	1	0
RFPL4B	442247	broad.mit.edu	37	6	112671295	112671295	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr6:112671295G>T	uc003pvx.1	+	3	697	c.385G>T	c.(385-387)GAT>TAT	p.D129Y		NM_001013734	NP_001013756	Q6ZWI9	RFPLB_HUMAN	ret finger protein-like 4B	129	B30.2/SPRY.						zinc ion binding				0		all_cancers(87;9.44e-05)|all_hematologic(75;0.000114)|all_epithelial(87;0.00265)|Colorectal(196;0.0209)		all cancers(137;0.0202)|OV - Ovarian serous cystadenocarcinoma(136;0.0477)|Epithelial(106;0.0646)|GBM - Glioblastoma multiforme(226;0.0866)|BRCA - Breast invasive adenocarcinoma(108;0.244)		TCTGACAAAAGATCCCAGGCT	0.557000													22	38					3.5997e-14	4.90304e-14	1	0
RFPL4B	442247	broad.mit.edu	37	6	112671407	112671407	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr6:112671407C>A	uc003pvx.1	+	3	809	c.497C>A	c.(496-498)CCG>CAG	p.P166Q		NM_001013734	NP_001013756	Q6ZWI9	RFPLB_HUMAN	ret finger protein-like 4B	166	B30.2/SPRY.						zinc ion binding				0		all_cancers(87;9.44e-05)|all_hematologic(75;0.000114)|all_epithelial(87;0.00265)|Colorectal(196;0.0209)		all cancers(137;0.0202)|OV - Ovarian serous cystadenocarcinoma(136;0.0477)|Epithelial(106;0.0646)|GBM - Glioblastoma multiforme(226;0.0866)|BRCA - Breast invasive adenocarcinoma(108;0.244)		TGCAAGGAGCCGGCTGACAGA	0.547000													30	67					7.01153e-11	8.88628e-11	1	0
LAMA2	3908	broad.mit.edu	37	6	129723502	129723502	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr6:129723502A>G	uc003qbn.2	+	39	5701	c.5596A>G	c.(5596-5598)ATG>GTG	p.M1866V	LAMA2_uc003qbo.2_Missense_Mutation_p.M1866V	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1866	Domain II and I.|Potential.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		ATTGCCACCTATGTCTGAGGA	0.423000													13	21					0	0	0	0
L3MBTL3	84456	broad.mit.edu	37	6	130378576	130378576	+	Silent	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr6:130378576G>T	uc003qbt.2	+	9	863	c.693G>T	c.(691-693)GCG>GCT	p.A231A	L3MBTL3_uc003qbu.2_Silent_p.A206A	NM_032438	NP_115814	Q96JM7	LMBL3_HUMAN	l(3)mbt-like 3 isoform a	231					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(5)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.0266)|OV - Ovarian serous cystadenocarcinoma(155;0.154)		GAAAGAAAGCGTGGTGCTGGG	0.522000													7	17					1.26484e-09	1.5452e-09	1	0
MAP3K5	4217	broad.mit.edu	37	6	136990474	136990474	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr6:136990474A>G	uc003qhc.2	-	8	1674	c.1313T>C	c.(1312-1314)CTC>CCC	p.L438P	MAP3K5_uc011edk.1_Missense_Mutation_p.L283P|MAP3K5_uc010kgw.1_Missense_Mutation_p.L438P	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	438					activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		TGCCAGGAGGAGGACCGCATA	0.388000													3	96					0	0	0	0
GPER	2852	broad.mit.edu	37	7	1131629	1131629	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr7:1131629G>A	uc010ksd.1	+	2	654	c.265G>A	c.(265-267)GAG>AAG	p.E89K	C7orf50_uc003sju.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron|GPER_uc003sjz.1_Missense_Mutation_p.E89K|GPER_uc003ska.1_Missense_Mutation_p.E89K|GPER_uc003skb.2_Missense_Mutation_p.E89K	NM_001098201	NP_001091671	Q99527	GPER_HUMAN	G protein-coupled receptor 30	89	Cytoplasmic (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;2.32e-16)		CAGCTTCCGCGAGAAGATGAC	0.582000													15	51					0	0	0	0
NPVF	64111	broad.mit.edu	37	7	25266438	25266438	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr7:25266438T>C	uc003sxo.2	-	2	393	c.346A>G	c.(346-348)ATG>GTG	p.M116V		NM_022150	NP_071433	Q9HCQ7	RFRP_HUMAN	neuropeptide VF precursor	116					neuropeptide signaling pathway	extracellular region|membrane	G-protein coupled receptor activity			ovary(1)	1						CTCACCTCCATATTTCTTCCA	0.493000													48	119					0	0	0	0
PDE1C	5137	broad.mit.edu	37	7	32209516	32209516	+	Silent	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr7:32209516C>A	uc003tco.1	-	3	783	c.189G>T	c.(187-189)GGG>GGT	p.G63G		NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	Error:Variant_position_missing_in_Q14123_after_alignment					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			CCTTGACATTCCCTGTGAGCC	0.517000													25	105					3.6726e-16	5.21202e-16	1	0
AMPH	273	broad.mit.edu	37	7	38433765	38433765	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr7:38433765G>A	uc003tgu.2	-	18	1517	c.1448C>T	c.(1447-1449)GCA>GTA	p.A483V	AMPH_uc003tgv.2_Missense_Mutation_p.A441V|AMPH_uc003tgt.2_Missense_Mutation_p.A368V|AMPH_uc003tgw.1_Missense_Mutation_p.A506V|AMPH_uc010kxl.1_RNA	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	483					endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						CCCCTCAGCTGCTGACACCAA	0.587000													55	66					0	0	0	0
IGFBP1	3484	broad.mit.edu	37	7	45928583	45928583	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr7:45928583C>A	uc003tnp.2	+	1	625	c.332C>A	c.(331-333)TCC>TAC	p.S111Y	IGFBP1_uc003tno.3_Missense_Mutation_p.S111Y|IGFBP1_uc010kyn.2_Missense_Mutation_p.S111Y	NM_000596	NP_000587	P08833	IBP1_HUMAN	insulin-like growth factor binding protein 1	111						extracellular space	insulin-like growth factor binding			lung(1)	1						TCTGACGCCTCCGCTCCCCAT	0.478000													4	4					0.00909568	0.00933193	1	0
GTF2IRD1	9569	broad.mit.edu	37	7	74015431	74015431	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr7:74015431C>G	uc003uaq.2	+	26	3128	c.2735C>G	c.(2734-2736)TCC>TGC	p.S912C	GTF2IRD1_uc010lbq.2_Missense_Mutation_p.S929C|GTF2IRD1_uc003uap.2_Missense_Mutation_p.S897C|GTF2IRD1_uc003uar.1_Missense_Mutation_p.S897C	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	912	Ser-rich.			Missing: Cytoplasmic localization.		nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						AATTCCGTctcctcttcctcc	0.438000													23	27					0	0	0	0
PON1	5444	broad.mit.edu	37	7	94946068	94946068	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr7:94946068T>G	uc003uns.2	-	3	276	c.179A>C	c.(178-180)AAT>ACT	p.N60T	PON1_uc011kih.1_Missense_Mutation_p.N60T	NM_000446	NP_000437	P27169	PON1_HUMAN	paraoxonase 1 precursor	60					aromatic compound catabolic process|carboxylic acid catabolic process|organophosphate catabolic process|phosphatidylcholine metabolic process|positive regulation of binding|positive regulation of cholesterol efflux|positive regulation of transporter activity|response to external stimulus	spherical high-density lipoprotein particle	aryldialkylphosphatase activity|arylesterase activity|calcium ion binding|phospholipid binding|protein homodimerization activity			pancreas(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0031)		Atorvastatin(DB01076)|Cefazolin(DB01327)	AGCCAGTCCATTAGGCAGTAT	0.398000													46	323					0	0	0	0
TECPR1	25851	broad.mit.edu	37	7	97872809	97872809	+	Silent	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr7:97872809C>A	uc003upg.2	-	6	832	c.627G>T	c.(625-627)CTG>CTT	p.L209L	TECPR1_uc003uph.1_Silent_p.L130L	NM_015395	NP_056210	Q7Z6L1	TCPR1_HUMAN	tectonin beta-propeller repeat containing 1	209	TECPR 1.					integral to membrane	protein binding			pancreas(1)	1						CCCACACTGACAGGCGGCCCA	0.647000													84	47					1.51188e-25	2.29689e-25	1	0
MUC17	140453	broad.mit.edu	37	7	100685833	100685833	+	Silent	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr7:100685833C>T	uc003uxp.1	+	3	11189	c.11136C>T	c.(11134-11136)AGC>AGT	p.S3712S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3712	Extracellular (Potential).|59.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CTGAGGGTAGCACCCTTTCAA	0.507000													441	189					0	0	0	0
RELN	5649	broad.mit.edu	37	7	103216153	103216153	+	Splice_Site	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr7:103216153C>A	uc003vca.2	-	29	4306	c.4146_splice	c.e29-1	p.S1382_splice	RELN_uc010liz.2_Splice_Site_p.S1382_splice	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a						axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TCTGGTCTTGCTGTTGGGAAA	0.403000													16	165					5.01169e-05	5.44849e-05	1	0
LAMB1	3912	broad.mit.edu	37	7	107580499	107580499	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr7:107580499G>C	uc003vew.2	-	25	4031	c.3696C>G	c.(3694-3696)GAC>GAG	p.D1232E	LAMB1_uc003vev.2_Missense_Mutation_p.D1256E	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	1232	Potential.|Domain II.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GCGCCAGGATGTCTTTTATCT	0.498000													36	37					0	0	0	0
CADPS2	93664	broad.mit.edu	37	7	122028668	122028668	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr7:122028668C>T	uc010lkp.2	-	22	3296	c.3133G>A	c.(3133-3135)GCC>ACC	p.A1045T	CADPS2_uc011knx.1_Missense_Mutation_p.A420T|CADPS2_uc003vkg.3_Missense_Mutation_p.A699T|CADPS2_uc010lkq.2_Missense_Mutation_p.A999T	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	1045	Interaction with DRD2.|MHD1.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						ATATCACTGGCCATTAGTTTA	0.408000													6	7					0	0	0	0
OR6V1	346517	broad.mit.edu	37	7	142750110	142750110	+	Silent	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr7:142750110C>A	uc011ksv.1	+	1	673	c.673C>A	c.(673-675)CGG>AGG	p.R225R		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					CACTGTGCTGCGGATCCCCTC	0.532000													55	63					2.12129e-23	3.18193e-23	1	0
CEBPD	1052	broad.mit.edu	37	8	48649939	48649939	+	Silent	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr8:48649939C>A	uc003xqh.1	-	1	788	c.744G>T	c.(742-744)CGG>CGT	p.R248R	KIAA0146_uc003xqg.1_Intron	NM_005195	NP_005186	P49716	CEBPD_HUMAN	CCAAT/enhancer binding protein delta	248	Leucine-zipper.				transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(86;0.0782)|Lung NSC(58;0.00363)|all_epithelial(80;0.0042)|all_lung(54;0.00914)				TGAAGAACTGCCGGAGGCCGG	0.687000													11	30					1.58986e-06	1.769e-06	1	0
ARFGEF1	10565	broad.mit.edu	37	8	68184172	68184172	+	Splice_Site	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr8:68184172C>A	uc003xxo.1	-	10	1728	c.1338_splice	c.e10-1	p.K446_splice		NM_006421	NP_006412	Q9Y6D6	BIG1_HUMAN	brefeldin A-inhibited guanine						exocytosis|regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity|myosin binding			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|kidney(1)	8	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.0043)|OV - Ovarian serous cystadenocarcinoma(28;0.00578)|all cancers(69;0.0173)|BRCA - Breast invasive adenocarcinoma(89;0.206)			TTCATGAGACCTAAAATGTAA	0.318000													12	13					6.40141e-05	6.92755e-05	1	0
INTS8	55656	broad.mit.edu	37	8	95863869	95863869	+	Silent	SNP	A	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr8:95863869A>G	uc003yhb.2	+	13	1722	c.1596A>G	c.(1594-1596)TTA>TTG	p.L532L	INTS8_uc003yha.1_Silent_p.L532L|INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_Silent_p.L359L	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	532					snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					TAATTGAATTACATGGTATGA	0.363000													19	45					0	0	0	0
RIMS2	9699	broad.mit.edu	37	8	105026790	105026790	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr8:105026790G>T	uc003yls.2	+	17	2742	c.2501G>T	c.(2500-2502)GGA>GTA	p.G834V	RIMS2_uc003ylp.2_Missense_Mutation_p.G1094V|RIMS2_uc003ylw.2_Missense_Mutation_p.G908V|RIMS2_uc003ylq.2_Missense_Mutation_p.G908V|RIMS2_uc003ylr.2_Missense_Mutation_p.G933V	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1156					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			CCAGTCGCAGGACGAAGGGGC	0.438000										HNSCC(12;0.0054)			21	26					4.63292e-17	6.69514e-17	1	0
DMRT3	58524	broad.mit.edu	37	9	990980	990980	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr9:990980C>G	uc003zgw.1	+	2	1432	c.1394C>G	c.(1393-1395)TCT>TGT	p.S465C		NM_021240	NP_067063	Q9NQL9	DMRT3_HUMAN	doublesex and mab-3 related transcription factor	465					cell differentiation|multicellular organismal development|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(2)|central_nervous_system(1)	3		all_lung(10;1.39e-08)|Lung NSC(10;1.42e-08)		Lung(218;0.0196)		TCCTCAGACTCTAGAACACTC	0.512000													32	39					0	0	0	0
Unknown	0	broad.mit.edu	37	9	68413602	68413602	+	RNA	SNP	A	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr9:68413602A>G	uc004aex.2	+	1		c.157A>G								Homo sapiens mRNA; cDNA DKFZp564N0763 (from clone DKFZp564N0763).																		CCTTTTGCTGAAACTCTGGGG	0.602000													2	4					0	0	0	0
TRPM6	140803	broad.mit.edu	37	9	77403655	77403655	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr9:77403655C>T	uc004ajl.1	-	20	2780	c.2542G>A	c.(2542-2544)GCG>ACG	p.A848T	TRPM6_uc004ajk.1_Missense_Mutation_p.A843T|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajm.1_Intron	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	848	Helical; (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						GCCAAATACGCCATCTGTGAG	0.532000													6	30					0	0	0	0
FGD3	89846	broad.mit.edu	37	9	95795123	95795123	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr9:95795123C>A	uc004asw.2	+	16	2381	c.1753C>A	c.(1753-1755)CTG>ATG	p.L585M	FGD3_uc004asx.2_Missense_Mutation_p.L585M|FGD3_uc004asz.2_Missense_Mutation_p.L585M|FGD3_uc011luc.1_Missense_Mutation_p.L188M	NM_001083536	NP_001077005	Q5JSP0	FGD3_HUMAN	FYVE, RhoGEF and PH domain containing 3	585	FYVE-type.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(1)|breast(1)	2						AGATTGTTTCCTGACACAGCC	0.637000													42	112					2.45108e-15	3.39711e-15	1	0
TBC1D2	55357	broad.mit.edu	37	9	100963875	100963875	+	Missense_Mutation	SNP	G	T	T	rs148540803	by1000genomes	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr9:100963875G>T	uc011lvb.1	-	11	2523	c.2343C>A	c.(2341-2343)CAC>CAA	p.H781Q	TBC1D2_uc004ayp.2_Missense_Mutation_p.H321Q|TBC1D2_uc004ayq.2_Missense_Mutation_p.H781Q|TBC1D2_uc004ayr.2_Missense_Mutation_p.H563Q|TBC1D2_uc004ayo.3_Missense_Mutation_p.H781Q	NM_018421	NP_060891	Q9BYX2	TBD2A_HUMAN	TBC1 domain family, member 2	781	Rab-GAP TBC.					cell junction|cytoplasmic membrane-bounded vesicle|nucleus	Rab GTPase activator activity			ovary(3)	3		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.55e-37)		GATCCACGTGGTGCTGCCCCA	0.607000													19	54					1.96292e-10	2.43567e-10	1	0
GRIN3A	116443	broad.mit.edu	37	9	104499694	104499694	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr9:104499694C>T	uc004bbp.1	-	1	1169	c.568G>A	c.(568-570)GTG>ATG	p.V190M	GRIN3A_uc004bbq.1_Missense_Mutation_p.V190M	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	190	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	ACCCCTTGCACCACCACGGTA	0.587000													17	45					0	0	0	0
FKTN	2218	broad.mit.edu	37	9	108366711	108366711	+	Silent	SNP	T	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr9:108366711T>A	uc004bcr.2	+	6	801	c.585T>A	c.(583-585)ATT>ATA	p.I195I	FKTN_uc011lvx.1_Silent_p.I195I|FKTN_uc004bcs.2_Silent_p.I195I|FKTN_uc011lvy.1_Silent_p.I195I|FKTN_uc010mtm.2_Silent_p.I63I	NM_001079802	NP_001073270	O75072	FKTN_HUMAN	fukutin	195	Lumenal (Potential).				muscle organ development|negative regulation of cell proliferation|negative regulation of JNK cascade|nervous system development|regulation of protein glycosylation	cis-Golgi network|endoplasmic reticulum|extracellular space|Golgi membrane|integral to membrane|nucleus	transferase activity			breast(2)|ovary(1)	3						AAGAACACATTGACAGGAAAT	0.443000													16	34					0	0	0	0
SVEP1	79987	broad.mit.edu	37	9	113169643	113169643	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr9:113169643C>A	uc010mtz.2	-	38	8574	c.8237G>T	c.(8236-8238)GGA>GTA	p.G2746V	SVEP1_uc010mty.2_Missense_Mutation_p.G672V	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2746	Sushi 22.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TAGAATGTGTCCAGGTTTACA	0.443000													28	65					1.26454e-06	1.42713e-06	1	0
FCN2	2220	broad.mit.edu	37	9	137772670	137772670	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr9:137772670G>T	uc004cfg.1	+	1	13	c.3G>T	c.(1-3)ATG>ATT	p.M1I	FCN2_uc004cfh.1_Missense_Mutation_p.M1I	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	1					complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		CAGAAGAGATGGAGCTGGACA	0.592000													14	29					6.31663e-08	7.41109e-08	1	0
PNPLA7	375775	broad.mit.edu	37	9	140438232	140438232	+	Silent	SNP	A	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr9:140438232A>C	uc004cnf.2	-	4	571	c.234T>G	c.(232-234)ACT>ACG	p.T78T	PNPLA7_uc010ncj.1_Silent_p.T103T	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	78					lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		GGGGCAGGGCAGTGTTCTCCA	0.622000													21	64					0	0	0	0
TSIX	9383	broad.mit.edu	37	X	73048907	73048907	+	RNA	SNP	T	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chrX:73048907T>G	uc004ebn.2	+	1		c.36868T>G			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						ACTTACTTCATTCAGCTATCC	0.458000													29	9					0	0	0	0
BRWD3	254065	broad.mit.edu	37	X	79999656	79999656	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chrX:79999656C>A	uc004edt.2	-	8	951	c.688G>T	c.(688-690)GTT>TTT	p.V230F	BRWD3_uc004edo.2_5'UTR|BRWD3_uc004edp.2_Missense_Mutation_p.V59F|BRWD3_uc004edq.2_5'UTR|BRWD3_uc010nmj.1_5'UTR|BRWD3_uc004edr.2_5'UTR|BRWD3_uc004eds.2_5'UTR|BRWD3_uc004edu.2_5'UTR|BRWD3_uc004edv.2_5'UTR|BRWD3_uc004edw.2_5'UTR|BRWD3_uc004edx.2_5'UTR|BRWD3_uc004edy.2_5'UTR|BRWD3_uc004edz.2_5'UTR|BRWD3_uc004eea.2_5'UTR|BRWD3_uc004eeb.2_Intron	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	230	WD 3.									ovary(4)	4						TCATAGTTAACAGCCATGTCA	0.448000													23	17					6.36457e-07	7.21724e-07	1	0
POU3F4	5456	broad.mit.edu	37	X	82764275	82764275	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chrX:82764275C>T	uc004eeg.2	+	1	1007	c.943C>T	c.(943-945)CTC>TTC	p.L315F		NM_000307	NP_000298	P49335	PO3F4_HUMAN	POU domain, class 3, transcription factor 4	315	Homeobox.				sensory perception of sound	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGCAGACAGCCTCCAGTTGGA	0.557000													11	9					0	0	0	0
DCX	1641	broad.mit.edu	37	X	110653366	110653366	+	Silent	SNP	C	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chrX:110653366C>G	uc004epd.2	-	2	676	c.504G>C	c.(502-504)CTG>CTC	p.L168L	DCX_uc011msv.1_Silent_p.L168L|DCX_uc004epe.2_Silent_p.L87L|DCX_uc004epf.2_Silent_p.L87L|DCX_uc004epg.2_Silent_p.L87L	NM_000555	NP_000546	O43602	DCX_HUMAN	doublecortin isoform a	168	Doublecortin 1.				axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding			central_nervous_system(2)|lung(1)|skin(1)	4						GAGATCGCGTCAGGTCAGCCA	0.527000													51	27					0	0	0	0
FAM70A	55026	broad.mit.edu	37	X	119410744	119410744	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chrX:119410744T>C	uc004eso.3	-	8	970	c.743A>G	c.(742-744)GAC>GGC	p.D248G	FAM70A_uc004esp.3_Missense_Mutation_p.D224G|FAM70A_uc010nqo.2_Intron	NM_017938	NP_060408	Q5JRV8	FA70A_HUMAN	hypothetical protein LOC55026 isoform 1	248						integral to membrane				lung(1)|breast(1)	2						CCTTACCATGTCCTTAAAGCC	0.507000													26	10					0	0	0	0
ODZ1	10178	broad.mit.edu	37	X	123515059	123515059	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chrX:123515059T>C	uc004euj.2	-	31	7569	c.7505A>G	c.(7504-7506)AAT>AGT	p.N2502S	ODZ1_uc011muj.1_Missense_Mutation_p.N2508S|ODZ1_uc010nqy.2_Missense_Mutation_p.N2509S	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	2502	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CCGTCCATCATTGTATCGGGG	0.463000													60	32					0	0	0	0
ATP11C	286410	broad.mit.edu	37	X	138899028	138899028	+	Silent	SNP	G	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chrX:138899028G>A	uc004faz.2	-	4	420	c.321C>T	c.(319-321)ATC>ATT	p.I107I	ATP11C_uc004fba.2_Silent_p.I107I	NM_173694	NP_775965	Q8NB49	AT11C_HUMAN	ATPase, class VI, type 11C isoform a	107	Helical; (Potential).				ATP biosynthetic process	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(5)|large_intestine(3)	8	Acute lymphoblastic leukemia(192;0.000127)					TTACCTGCTTGATGGCTGTAA	0.368000													17	21					0	0	0	0
SPANXN1	494118	broad.mit.edu	37	X	144329127	144329127	+	Silent	SNP	C	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chrX:144329127C>T	uc004fcb.2	+	1	21	c.21C>T	c.(19-21)AGC>AGT	p.S7S		NM_001009614	NP_001009614	Q5VSR9	SPXN1_HUMAN	SPANX-N1 protein	7											0	Acute lymphoblastic leukemia(192;6.56e-05)					CCACTTCAAGCATCAATGGGG	0.363000													46	41					0	0	0	0
TMEM79	84283	broad.mit.edu	37	1	156261302	156261302	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr1:156261302delG	uc010phi.1	+	4	1294	c.1098delG	c.(1096-1098)GAGfs	p.E366fs	TMEM79_uc001fod.2_Frame_Shift_Del_p.E207fs|TMEM79_uc009wrw.2_Frame_Shift_Del_p.E366fs|C1orf85_uc001fof.3_Intron|C1orf85_uc001fog.1_Intron	NM_032323	NP_115699	Q9BSE2	TMM79_HUMAN	transmembrane protein 79	366						integral to membrane				central_nervous_system(1)	1	Hepatocellular(266;0.158)					TGGAGCCGGAGCGCATGCTCA	0.672													---	---	---							
KBTBD4	55709	broad.mit.edu	37	11	47598968	47598971	+	Frame_Shift_Del	DEL	ATGA	-	-	rs149725159		TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr11:47598968_47598971delATGA	uc001nfx.2	-	2	752_755	c.581_584delTCAT	c.(580-585)ATCATCfs	p.I194fs	NDUFS3_uc001nft.3_Intron|KBTBD4_uc001nfw.1_Frame_Shift_Del_p.I219fs|KBTBD4_uc001nfz.2_Frame_Shift_Del_p.I210fs|KBTBD4_uc001nfy.2_Frame_Shift_Del_p.I194fs|NDUFS3_uc010rhn.1_5'Flank|NDUFS3_uc001nga.2_5'Flank	NM_016506	NP_057590	Q9NVX7	KBTB4_HUMAN	kelch repeat and BTB (POZ) domain containing 4	194_195	BACK.			I -> T (in Ref. 1; BAA91616).						ovary(1)|central_nervous_system(1)	2						CTTACCCGAGATGATATCTGTGAG	0.500													---	---	---							
VPS11	55823	broad.mit.edu	37	11	118949031	118949033	+	In_Frame_Del	DEL	AGA	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr11:118949031_118949033delAGA	uc010ryx.1	+	12	1952_1954	c.1910_1912delAGA	c.(1909-1914)GAGAAG>GAG	p.K638del	VPS11_uc010ryy.1_In_Frame_Del_p.K484del	NM_021729	NP_068375	Q9H270	VPS11_HUMAN	vacuolar protein sorting 11	638					protein transport	endocytic vesicle|HOPS complex|late endosome membrane|lysosomal membrane	nucleotide binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.88e-05)		TGGGCCCACGAGAAGGATCCACA	0.562													---	---	---							
CD27	939	broad.mit.edu	37	12	6559460	6559466	+	Frame_Shift_Del	DEL	TCGGTCG	-	-	rs150578547	byFrequency	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr12:6559460_6559466delTCGGTCG	uc001qod.2	+	3	601_607	c.390_396delTCGGTCG	c.(388-396)GCTCGGTCGfs	p.A130fs	LOC678655_uc001qob.2_Intron|LOC678655_uc001qoc.2_Intron|LOC678655_uc009zel.1_Intron|CD27_uc001qoe.2_5'UTR|LOC678655_uc009zem.1_Intron|LOC678655_uc001qof.2_Intron|TAPBPL_uc001qog.3_5'Flank|TAPBPL_uc001qoh.3_5'Flank|TAPBPL_uc001qoi.1_5'Flank	NM_001242	NP_001233	P26842	CD27_HUMAN	tumor necrosis factor receptor superfamily,	130_132	Extracellular (Potential).|TNFR-Cys 3.				anti-apoptosis|apoptosis|cell surface receptor linked signaling pathway|immunoglobulin mediated immune response|induction of apoptosis|positive regulation of B cell differentiation|positive regulation of JNK cascade|release of cytoplasmic sequestered NF-kappaB	extracellular region|integral to plasma membrane	caspase inhibitor activity|protein binding|transmembrane receptor activity				0						CGCTGACCGCTCGGTCGTCTCAGGCCC	0.585													---	---	---							
DPPA3	359787	broad.mit.edu	37	12	7864234	7864234	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr12:7864234delC	uc001qtf.2	+	1	146	c.68delC	c.(67-69)TCCfs	p.S23fs		NM_199286	NP_954980	Q6W0C5	DPPA3_HUMAN	stella	23						cytoplasm|nucleus					0				Kidney(36;0.0887)		GAAGAAAATTCCCGGGACGAT	0.468													---	---	---							
GTF2H3	2967	broad.mit.edu	37	12	124132650	124132650	+	Frame_Shift_Del	DEL	A	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr12:124132650delA	uc001ufo.1	+	4	367	c.341delA	c.(340-342)GAGfs	p.E114fs	GTF2H3_uc010tau.1_Frame_Shift_Del_p.E73fs	NM_001516	NP_001507	Q13889	TF2H3_HUMAN	general transcription factor IIH, polypeptide 3,	114					mRNA capping|nucleotide-excision repair, DNA damage removal|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	core TFIIH complex|holo TFIIH complex	damaged DNA binding|metal ion binding|protein N-terminus binding|sequence-specific DNA binding transcription factor activity|translation factor activity, nucleic acid binding				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.1e-05)|Epithelial(86;0.000388)|all cancers(50;0.00362)		ATTGTTGAAGAGATTAAAGAT	0.348								NER					---	---	---							
HAGHL	84264	broad.mit.edu	37	16	778954	778955	+	Frame_Shift_Ins	INS	-	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr16:778954_778955insG	uc002cjl.1	+	7	940_941	c.659_660insG	c.(658-660)GTGfs	p.V220fs	CCDC78_uc002cji.3_5'Flank|CCDC78_uc002cjg.2_5'Flank|CCDC78_uc002cjj.3_5'Flank|CCDC78_uc002cjh.2_5'Flank|CCDC78_uc010uuo.1_5'Flank|CCDC78_uc002cjk.2_5'Flank|HAGHL_uc002cjm.1_3'UTR|HAGHL_uc002cjn.1_3'UTR|HAGHL_uc002cjo.1_Intron|HAGHL_uc010uup.1_Intron	NM_207112	NP_996995	Q6PII5	HAGHL_HUMAN	hydroxyacylglutathione hydrolase-like isoform 1	220							hydrolase activity|metal ion binding				0		Hepatocellular(780;0.00335)				GGCTTCGGGGTGGGGGGGGCTC	0.668													---	---	---							
Unknown	0	broad.mit.edu	37	16	13966971	13966973	+	IGR	DEL	TGG	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr16:13966971_13966973delTGG								SHISA9 (632699 upstream) : ERCC4 (47041 downstream)																							gtggtggtgatggtggtggtggt	0.177													---	---	---							
CPNE2	221184	broad.mit.edu	37	16	57144698	57144698	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr16:57144698delC	uc002eks.1	+	2	273	c.44delC	c.(43-45)GCCfs	p.A15fs	CPNE2_uc010cct.1_Frame_Shift_Del_p.A41fs|CPNE2_uc010ccu.1_Frame_Shift_Del_p.A15fs	NM_152727	NP_689940	Q96FN4	CPNE2_HUMAN	copine II	15	C2 1.									central_nervous_system(1)|skin(1)	2		all_neural(199;0.224)				GCGGGGGCAGCCCCCATGGGC	0.642													---	---	---							
Unknown	0	broad.mit.edu	37	17	34236020	34236034	+	RNA	DEL	GCTGTAGTCATCGGG	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr17:34236020_34236034delGCTGTAGTCATCGGG	uc010ctx.1	-	1		c.920_934delCCCGATGACTACAGC								Homo sapiens cDNA FLJ43944 fis, clone TESTI4014392.																		TGGAGGAGGAGCTGTAGTCATCGGGGCTGTAGAAG	0.484													---	---	---							
CPAMD8	27151	broad.mit.edu	37	19	17056421	17056428	+	Frame_Shift_Del	DEL	TCTCCTCA	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr19:17056421_17056428delTCTCCTCA	uc002nfb.2	-	22	2897_2904	c.2865_2872delTGAGGAGA	c.(2863-2874)CCTGAGGAGAATfs	p.P955fs		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	908_911						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						TCGGCGTGATTCTCCTCAGGGTGTTTGC	0.572													---	---	---							
Unknown	0	broad.mit.edu	37	2	64603169	64603171	+	IGR	DEL	CAT	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr2:64603169_64603171delCAT								PELI1 (231564 upstream) : HSPC159 (78156 downstream)																							ccaccaccaccatcaccatcacc	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	21	37388732	37388733	+	IGR	INS	-	T	T			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr21:37388732_37388733insT								RUNX1 (31685 upstream) : SETD4 (18107 downstream)																							CGTGTGGATCATTTTTTTTGTG	0.520													---	---	---							
CDC45	8318	broad.mit.edu	37	22	19504093	19504093	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr22:19504093delC	uc002zpr.2	+	16	1560	c.1484delC	c.(1483-1485)GCCfs	p.A495fs	CDC45_uc011aha.1_Frame_Shift_Del_p.A527fs|CDC45_uc002zps.2_Frame_Shift_Del_p.A495fs|CDC45_uc002zpt.2_Frame_Shift_Del_p.A449fs	NM_003504	NP_003495	O75419	CDC45_HUMAN	CDC45-like	495					DNA replication checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle	centrosome|nucleoplasm	protein binding			lung(1)	1						GTGATGGCTGCCCCCCTGAGC	0.627													---	---	---							
SHANK3	85358	broad.mit.edu	37	22	51159933	51159933	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr22:51159933delG	uc003bne.1	+	22	3720	c.3720delG	c.(3718-3720)CTGfs	p.L1240fs	SHANK3_uc003bnf.1_Frame_Shift_Del_p.L687fs|SHANK3_uc010hbg.1_Frame_Shift_Del_p.L422fs	NM_001080420	NP_001073889	F2Z3L0	F2Z3L0_HUMAN	SH3 and multiple ankyrin repeat domains 3	1240										central_nervous_system(1)	1		all_cancers(38;3.75e-11)|all_epithelial(38;1.82e-09)|Breast(42;0.000448)|all_lung(38;0.000665)|Lung NSC(38;0.0104)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.22)		CCAGCAGGCTGGGGGGGGCCG	0.721													---	---	---							
ADAMTS12	81792	broad.mit.edu	37	5	33614378	33614378	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr5:33614378delC	uc003jia.1	-	16	2655	c.2492delG	c.(2491-2493)GGCfs	p.G831fs	ADAMTS12_uc010iuq.1_Frame_Shift_Del_p.G746fs	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	831	TSP type-1 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						TGTCCAGTGGCCGTACTGCCA	0.502										HNSCC(64;0.19)			---	---	---							
Unknown	0	broad.mit.edu	37	5	163111075	163111075	+	IGR	DEL	T	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr5:163111075delT								MAT2B (164742 upstream) : None (None downstream)																							GTCGCATTTCTTTTTtttttt	0.154													---	---	---							
Unknown	0	broad.mit.edu	37	7	42834926	42834926	+	IGR	DEL	T	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr7:42834926delT								GLI3 (558308 upstream) : C7orf25 (113948 downstream)																							TTAACACAGATAAAGTGGGAA	0.388													---	---	---							
Unknown	0	broad.mit.edu	37	7	57642555	57642555	+	IGR	DEL	T	-	-	rs111344841		TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr7:57642555delT								ZNF716 (109290 upstream) : None (None downstream)																							AAAAACAAGGTTTTATTAACT	0.368													---	---	---							
Unknown	0	broad.mit.edu	37	7	63033298	63033299	+	IGR	INS	-	GCT	GCT			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr7:63033298_63033299insGCT								LOC100287704 (221147 upstream) : ZNF727 (472522 downstream)																							GTCTCCGAgccgctgctgctgc	0.579													---	---	---							
RELN	5649	broad.mit.edu	37	7	103629803	103629804	+	Translation_Start_Site	INS	-	GCCGCC	GCCGCC			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr7:103629803_103629804insGCCGCC	uc003vca.2	-	1					RELN_uc010liz.2_Translation_Start_Site	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a						axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CTGCGCTCCATgccgccgccgc	0.569													---	---	---							
Unknown	0	broad.mit.edu	37	8	60806352	60806352	+	IGR	DEL	G	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr8:60806352delG								TOX (774585 upstream) : CA8 (295071 downstream)																							GATCCAGGTCGGATTTGAGGG	0.512													---	---	---							
ARID3C	138715	broad.mit.edu	37	9	34622436	34622436	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr9:34622436delG	uc011lon.1	-	5	956	c.956delC	c.(955-957)CCAfs	p.P319fs	DCTN3_uc003zuw.1_5'Flank|DCTN3_uc003zux.1_5'Flank	NM_001017363	NP_001017363	A6NKF2	ARI3C_HUMAN	AT rich interactive domain 3C (BRIGHT- like)	319	REKLES.|Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.175)		TCTCTTCTCTGGGGGCTCCTC	0.607													---	---	---							
Unknown	0	broad.mit.edu	37	9	90436742	90436744	+	IGR	DEL	ACA	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr9:90436742_90436744delACA								CTSL3 (34943 upstream) : C9orf79 (60997 downstream)																							CCAGTTAGTGACAACAACAACAA	0.409													---	---	---							
OR13F1	138805	broad.mit.edu	37	9	107267065	107267066	+	Frame_Shift_Ins	INS	-	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	007618bc-1555-4b26-80ba-94678bcefcc8	g.chr9:107267065_107267066insA	uc011lvm.1	+	1	522_523	c.522_523insA	c.(520-525)ATCAATfs	p.I174fs		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	174_175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						ATAGCATCATCAATCATTTCAC	0.480													---	---	---							
Unknown	0	broad.mit.edu	37	1	148855815	148855816	+	IGR	INS	-	G	G			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr1:148855815_148855816insG								NBPF16 (97504 upstream) : LOC645166 (72470 downstream)																							gccgcggcggcgggggggcggg	0.381													---	---	---							
TMEM79	84283	broad.mit.edu	37	1	156261302	156261302	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr1:156261302delG	uc010phi.1	+	4	1294	c.1098delG	c.(1096-1098)GAGfs	p.E366fs	TMEM79_uc001fod.2_Frame_Shift_Del_p.E207fs|TMEM79_uc009wrw.2_Frame_Shift_Del_p.E366fs|C1orf85_uc001fof.3_Intron|C1orf85_uc001fog.1_Intron	NM_032323	NP_115699	Q9BSE2	TMM79_HUMAN	transmembrane protein 79	366						integral to membrane				central_nervous_system(1)	1	Hepatocellular(266;0.158)					TGGAGCCGGAGCGCATGCTCA	0.672													---	---	---							
Unknown	0	broad.mit.edu	37	10	22498484	22498485	+	IGR	INS	-	AGA	AGA	rs140751641	by1000genomes	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr10:22498484_22498485insAGA								DNAJC1 (205834 upstream) : COMMD3 (106814 downstream)																							CAATGCCTATCAGATCACAGCA	0.455													---	---	---							
KBTBD4	55709	broad.mit.edu	37	11	47598968	47598971	+	Frame_Shift_Del	DEL	ATGA	-	-	rs149725159		TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr11:47598968_47598971delATGA	uc001nfx.2	-	2	752_755	c.581_584delTCAT	c.(580-585)ATCATCfs	p.I194fs	NDUFS3_uc001nft.3_Intron|KBTBD4_uc001nfw.1_Frame_Shift_Del_p.I219fs|KBTBD4_uc001nfz.2_Frame_Shift_Del_p.I210fs|KBTBD4_uc001nfy.2_Frame_Shift_Del_p.I194fs|NDUFS3_uc010rhn.1_5'Flank|NDUFS3_uc001nga.2_5'Flank	NM_016506	NP_057590	Q9NVX7	KBTB4_HUMAN	kelch repeat and BTB (POZ) domain containing 4	194_195	BACK.			I -> T (in Ref. 1; BAA91616).						ovary(1)|central_nervous_system(1)	2						CTTACCCGAGATGATATCTGTGAG	0.500													---	---	---							
VPS11	55823	broad.mit.edu	37	11	118949031	118949033	+	In_Frame_Del	DEL	AGA	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr11:118949031_118949033delAGA	uc010ryx.1	+	12	1952_1954	c.1910_1912delAGA	c.(1909-1914)GAGAAG>GAG	p.K638del	VPS11_uc010ryy.1_In_Frame_Del_p.K484del	NM_021729	NP_068375	Q9H270	VPS11_HUMAN	vacuolar protein sorting 11	638					protein transport	endocytic vesicle|HOPS complex|late endosome membrane|lysosomal membrane	nucleotide binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.88e-05)		TGGGCCCACGAGAAGGATCCACA	0.562													---	---	---							
CD27	939	broad.mit.edu	37	12	6559460	6559466	+	Frame_Shift_Del	DEL	TCGGTCG	-	-	rs150578547	byFrequency	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr12:6559460_6559466delTCGGTCG	uc001qod.2	+	3	601_607	c.390_396delTCGGTCG	c.(388-396)GCTCGGTCGfs	p.A130fs	LOC678655_uc001qob.2_Intron|LOC678655_uc001qoc.2_Intron|LOC678655_uc009zel.1_Intron|CD27_uc001qoe.2_5'UTR|LOC678655_uc009zem.1_Intron|LOC678655_uc001qof.2_Intron|TAPBPL_uc001qog.3_5'Flank|TAPBPL_uc001qoh.3_5'Flank|TAPBPL_uc001qoi.1_5'Flank	NM_001242	NP_001233	P26842	CD27_HUMAN	tumor necrosis factor receptor superfamily,	130_132	Extracellular (Potential).|TNFR-Cys 3.				anti-apoptosis|apoptosis|cell surface receptor linked signaling pathway|immunoglobulin mediated immune response|induction of apoptosis|positive regulation of B cell differentiation|positive regulation of JNK cascade|release of cytoplasmic sequestered NF-kappaB	extracellular region|integral to plasma membrane	caspase inhibitor activity|protein binding|transmembrane receptor activity				0						CGCTGACCGCTCGGTCGTCTCAGGCCC	0.585													---	---	---							
DPPA3	359787	broad.mit.edu	37	12	7864234	7864234	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr12:7864234delC	uc001qtf.2	+	1	146	c.68delC	c.(67-69)TCCfs	p.S23fs		NM_199286	NP_954980	Q6W0C5	DPPA3_HUMAN	stella	23						cytoplasm|nucleus					0				Kidney(36;0.0887)		GAAGAAAATTCCCGGGACGAT	0.468													---	---	---							
GTF2H3	2967	broad.mit.edu	37	12	124132650	124132650	+	Frame_Shift_Del	DEL	A	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr12:124132650delA	uc001ufo.1	+	4	367	c.341delA	c.(340-342)GAGfs	p.E114fs	GTF2H3_uc010tau.1_Frame_Shift_Del_p.E73fs	NM_001516	NP_001507	Q13889	TF2H3_HUMAN	general transcription factor IIH, polypeptide 3,	114					mRNA capping|nucleotide-excision repair, DNA damage removal|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	core TFIIH complex|holo TFIIH complex	damaged DNA binding|metal ion binding|protein N-terminus binding|sequence-specific DNA binding transcription factor activity|translation factor activity, nucleic acid binding				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.1e-05)|Epithelial(86;0.000388)|all cancers(50;0.00362)		ATTGTTGAAGAGATTAAAGAT	0.348								NER					---	---	---							
C14orf4	64207	broad.mit.edu	37	14	77493792	77493794	+	In_Frame_Del	DEL	TGT	-	-	rs28718623		TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr14:77493792_77493794delTGT	uc001xsy.2	-	1	1241_1243	c.342_344delACA	c.(340-345)CAACAG>CAG	p.114_115QQ>Q		NM_024496	NP_078772	Q9H1B7	I2BPL_HUMAN	chromosome 14 open reading frame 4	114_115	Poly-Gln.|Potential.					nucleus					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.00347)|KIRC - Kidney renal clear cell carcinoma(182;0.0878)		ctgctgctgctgttgctgctgct	0.266													---	---	---							
CPNE2	221184	broad.mit.edu	37	16	57144698	57144698	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr16:57144698delC	uc002eks.1	+	2	273	c.44delC	c.(43-45)GCCfs	p.A15fs	CPNE2_uc010cct.1_Frame_Shift_Del_p.A41fs|CPNE2_uc010ccu.1_Frame_Shift_Del_p.A15fs	NM_152727	NP_689940	Q96FN4	CPNE2_HUMAN	copine II	15	C2 1.									central_nervous_system(1)|skin(1)	2		all_neural(199;0.224)				GCGGGGGCAGCCCCCATGGGC	0.642													---	---	---							
Unknown	0	broad.mit.edu	37	17	34236020	34236034	+	RNA	DEL	GCTGTAGTCATCGGG	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr17:34236020_34236034delGCTGTAGTCATCGGG	uc010ctx.1	-	1		c.920_934delCCCGATGACTACAGC								Homo sapiens cDNA FLJ43944 fis, clone TESTI4014392.																		TGGAGGAGGAGCTGTAGTCATCGGGGCTGTAGAAG	0.484													---	---	---							
CPAMD8	27151	broad.mit.edu	37	19	17056421	17056428	+	Frame_Shift_Del	DEL	TCTCCTCA	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr19:17056421_17056428delTCTCCTCA	uc002nfb.2	-	22	2897_2904	c.2865_2872delTGAGGAGA	c.(2863-2874)CCTGAGGAGAATfs	p.P955fs		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	908_911						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						TCGGCGTGATTCTCCTCAGGGTGTTTGC	0.572													---	---	---							
CDC45	8318	broad.mit.edu	37	22	19504093	19504093	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr22:19504093delC	uc002zpr.2	+	16	1560	c.1484delC	c.(1483-1485)GCCfs	p.A495fs	CDC45_uc011aha.1_Frame_Shift_Del_p.A527fs|CDC45_uc002zps.2_Frame_Shift_Del_p.A495fs|CDC45_uc002zpt.2_Frame_Shift_Del_p.A449fs	NM_003504	NP_003495	O75419	CDC45_HUMAN	CDC45-like	495					DNA replication checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle	centrosome|nucleoplasm	protein binding			lung(1)	1						GTGATGGCTGCCCCCCTGAGC	0.627													---	---	---							
SHANK3	85358	broad.mit.edu	37	22	51159933	51159933	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr22:51159933delG	uc003bne.1	+	22	3720	c.3720delG	c.(3718-3720)CTGfs	p.L1240fs	SHANK3_uc003bnf.1_Frame_Shift_Del_p.L687fs|SHANK3_uc010hbg.1_Frame_Shift_Del_p.L422fs	NM_001080420	NP_001073889	F2Z3L0	F2Z3L0_HUMAN	SH3 and multiple ankyrin repeat domains 3	1240										central_nervous_system(1)	1		all_cancers(38;3.75e-11)|all_epithelial(38;1.82e-09)|Breast(42;0.000448)|all_lung(38;0.000665)|Lung NSC(38;0.0104)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.22)		CCAGCAGGCTGGGGGGGGCCG	0.721													---	---	---							
Unknown	0	broad.mit.edu	37	4	49236027	49236027	+	IGR	DEL	T	-	-	rs145140129		TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr4:49236027delT								CWH43 (171934 upstream) : None (None downstream)																							CAATGAGCTCTTTGCCAATCA	0.512													---	---	---							
ADAMTS12	81792	broad.mit.edu	37	5	33614378	33614378	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr5:33614378delC	uc003jia.1	-	16	2655	c.2492delG	c.(2491-2493)GGCfs	p.G831fs	ADAMTS12_uc010iuq.1_Frame_Shift_Del_p.G746fs	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	831	TSP type-1 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						TGTCCAGTGGCCGTACTGCCA	0.502										HNSCC(64;0.19)			---	---	---							
Unknown	0	broad.mit.edu	37	5	163111075	163111075	+	IGR	DEL	T	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr5:163111075delT								MAT2B (164742 upstream) : None (None downstream)																							GTCGCATTTCTTTTTtttttt	0.154													---	---	---							
ATXN1	6310	broad.mit.edu	37	6	16327907	16327909	+	In_Frame_Del	DEL	TGA	-	-	rs59310777	by1000genomes	TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr6:16327907_16327909delTGA	uc003nbt.2	-	8	1604_1606	c.633_635delTCA	c.(631-636)CATCAG>CAG	p.H211del	ATXN1_uc010jpi.2_In_Frame_Del_p.H211del|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	211	Poly-Gln.			H -> HQ (in Ref. 1; CAA55793).	cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				ctgctgctgctgatgctgatgct	0.384													---	---	---							
Unknown	0	broad.mit.edu	37	7	42834926	42834926	+	IGR	DEL	T	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr7:42834926delT								GLI3 (558308 upstream) : C7orf25 (113948 downstream)																							TTAACACAGATAAAGTGGGAA	0.388													---	---	---							
Unknown	0	broad.mit.edu	37	7	55745517	55745518	+	IGR	DEL	AA	-	-	rs35333847		TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr7:55745517_55745518delAA								LOC442308 (30875 upstream) : FKBP9L (3250 downstream)																							TAAAACTGTTAAAAAAAAAAAA	0.322													---	---	---							
Unknown	0	broad.mit.edu	37	7	62672242	62672243	+	IGR	DEL	AC	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr7:62672242_62672243delAC								None (None upstream) : LOC643955 (79429 downstream)																							TTTAttttctactttttttttt	0.119													---	---	---							
Unknown	0	broad.mit.edu	37	7	65268568	65268570	+	IGR	DEL	CTT	-	-	rs75342027		TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr7:65268568_65268570delCTT								CCT6P1 (39907 upstream) : VKORC1L1 (69687 downstream)																							CCTCTTTTTCCTTCttttttaaa	0.365													---	---	---							
Unknown	0	broad.mit.edu	37	8	60806352	60806352	+	IGR	DEL	G	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr8:60806352delG								TOX (774585 upstream) : CA8 (295071 downstream)																							GATCCAGGTCGGATTTGAGGG	0.512													---	---	---							
ARID3C	138715	broad.mit.edu	37	9	34622436	34622436	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr9:34622436delG	uc011lon.1	-	5	956	c.956delC	c.(955-957)CCAfs	p.P319fs	DCTN3_uc003zuw.1_5'Flank|DCTN3_uc003zux.1_5'Flank	NM_001017363	NP_001017363	A6NKF2	ARI3C_HUMAN	AT rich interactive domain 3C (BRIGHT- like)	319	REKLES.|Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.175)		TCTCTTCTCTGGGGGCTCCTC	0.607													---	---	---							
OR13F1	138805	broad.mit.edu	37	9	107267065	107267066	+	Frame_Shift_Ins	INS	-	A	A			TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chr9:107267065_107267066insA	uc011lvm.1	+	1	522_523	c.522_523insA	c.(520-525)ATCAATfs	p.I174fs		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	174_175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						ATAGCATCATCAATCATTTCAC	0.480													---	---	---							
Unknown	0	broad.mit.edu	37	Y	28582961	28582962	+	IGR	INS	-	AT	AT	rs4008413		TCGA-CV-6960-01A-41D-2012-08	TCGA-CV-6960-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	750da72e-cabd-4b97-8160-8c4e39272b8b	3789df7b-2376-43c0-b181-5cd5ec3c5328	g.chrY:28582961_28582962insAT								None (None upstream) : None (None downstream)																							AAGTATAAAACAAAAACCTAAA	0.322													---	---	---							
