Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACVR2B	0	genome.wustl.edu	37	3	38520670	38520670	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	3	38520670	38520670	A	T	SNP	ACVR2B	NM_001106.3	human	genbank	58_37c	+1	reviewed	nonsense	c.718	p.K240*	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMPfam_Activin_recp,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,superfamily_Snake toxin-like	-	no_errors
ANK3	0	genome.wustl.edu	37	10	61833948	61833948	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	10	61833948	61833948	T	C	SNP	ANK3	NM_020987.2	human	genbank	58_37c	-1	reviewed	missense	c.6691	p.N2231D	0.946	NULL	HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMSmart_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like	-	no_errors
ANK3	0	genome.wustl.edu	37	10	61835214	61835214	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	10	61835214	61835214	A	T	SNP	ANK3	NM_020987.2	human	genbank	58_37c	-1	reviewed	missense	c.5425	p.S1809T	1.000	NULL	HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMSmart_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like	-	no_errors
ANKS4B	0	genome.wustl.edu	37	16	21261144	21261144	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	16	21261144	21261144	A	T	SNP	ANKS4B	NM_145865.2	human	genbank	58_37c	+1	validated	missense	c.257	p.N86I	1.000	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_SAM/Pointed domain	-	no_errors
C1orf129	0	genome.wustl.edu	37	1	170940889	170940889	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	1	170940889	170940889	A	G	SNP	C1orf129	NM_025063.2	human	genbank	58_37c	+1	validated	missense	c.481	p.I161V	0.039	NULL	NULL	-	no_errors
C20orf70	0	genome.wustl.edu	37	20	31756984	31756984	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	20	31756984	31756984	C	T	SNP	C20orf70	NM_080574.2	human	genbank	58_37c	+1	validated	silent	c.33	p.C11	0.133	NULL	HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal_perm-incr_a/b_dom	-	no_errors
CCDC144NL	0	genome.wustl.edu	37	17	20768762	20768763	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	17	20768762	20768763	-	C	INS	CCDC144NL	NM_001004306.1	human	genbank	58_37c	-1	provisional	frame_shift_ins	c.632_631	p.K211fs	0.020:0.028	NULL	NULL	-	no_errors
CDK11A	0	genome.wustl.edu	37	1	1638858	1638858	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	1	1638858	1638858	G	A	SNP	CDK11A	NM_024011.2	human	genbank	58_37c	-1	reviewed	missense	c.1235	p.P412L	1.000	superfamily_Protein kinase-like (PK-like)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	-	no_errors
CIDEC	0	genome.wustl.edu	37	3	9911640	9911640	+	Silent	SNP	G	G	A	rs144384365	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	3	9911640	9911640	G	A	SNP	CIDEC	NM_022094.2	human	genbank	58_37c	-1	provisional	silent	c.480	p.N160	0.572	NULL	PatternScan_SERPIN,HMMPfam_CIDE-N,HMMSmart_SM00266,superfamily_CAD  PB1 domains	-	no_errors
CTSL2	0	genome.wustl.edu	37	9	99797047	99797047	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	9	99797047	99797047	G	A	SNP	CTSL2	NM_001333.2	human	genbank	58_37c	-1	reviewed	missense	c.866	p.A289V	0.001	HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,superfamily_SSF54001	PatternScan_THIOL_PROTEASE_CYS,PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN,HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,HMMPfam_Inhibitor_I29,superfamily_SSF54001	-	no_errors
DDX55	0	genome.wustl.edu	37	12	124094511	124094511	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	12	124094511	124094511	C	G	SNP	DDX55	NM_020936.1	human	genbank	58_37c	+1	reviewed	missense	c.577	p.P193A	1.000	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	PatternScan_DEAD_ATP_HELICASE,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DHX9	0	genome.wustl.edu	37	1	182849707	182849707	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	1	182849707	182849707	G	A	SNP	DHX9	NM_001357.4	human	genbank	58_37c	+1	reviewed	missense	c.2588	p.R863H	1.000	HMMPfam_HA2,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_dsrm,HMMSmart_SM00358,HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMPfam_HA2,HMMPfam_DEAD,HMMPfam_DUF1605,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_dsRNA-binding domain-like	-	no_errors
DNMT3A	0	genome.wustl.edu	37	2	25457218	25457218	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	2	25457218	25457218	C	T	SNP	DNMT3A	NM_022552.3	human	genbank	58_37c	-1	reviewed	missense	c.2669	p.G890D	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
ENSG00000211459	0	genome.wustl.edu	37	MT	1574	1574	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	MT	1574	1574	G	A	SNP	ENSG00000211459	ENST00000389680	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000224343	0	genome.wustl.edu	37	6	160132738	160132738	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	6	160132738	160132738	C	T	SNP	ENSG00000224343	ENST00000442642	human	ensembl	58_37c	-1	known	missense	c.269	p.S90N	0.000	NULL	NULL	-	no_start_codon
ENSG00000227717	0	genome.wustl.edu	37	15	28798786	28798786	+	Missense_Mutation	SNP	A	A	T	rs76636283	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	15	28798786	28798786	A	T	SNP	ENSG00000227717	ENST00000440738	human	ensembl	58_37c	+1	known	missense	c.18	p.Q6H	0.008	NULL	NULL	-	no_errors
ENSG00000248706	0	genome.wustl.edu	37	17	77892603	77892604	+	RNA	INS	-	-	T	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	17	77892603	77892604	-	T	INS	ENSG00000248706	ENST00000507040	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors
FAT4	0	genome.wustl.edu	37	4	126320040	126320041	+	Frame_Shift_Del	DEL	TA	TA	-	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	4	126320040	126320041	TA	-	DEL	FAT4	NM_024582.4	human	genbank	58_37c	+1	validated	frame_shift_del	c.5277_5278	p.M1760fs	0.987:1.000	HMMPfam_Cadherin,superfamily_Cadherin-like	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_Cadherin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FRMPD2	0	genome.wustl.edu	37	10	49389016	49389016	+	Missense_Mutation	SNP	T	T	C	rs1346694	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	10	49389016	49389016	T	C	SNP	FRMPD2	NM_001018071.3	human	genbank	58_37c	-1	reviewed	missense	c.2620	p.S874G	0.017	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00750,HMMPfam_FERM_N,HMMPfam_FERM_C,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_PH domain-like,superfamily_Ubiquitin-like	-	no_errors
FUK	0	genome.wustl.edu	37	16	70497609	70497609	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	16	70497609	70497609	A	C	SNP	FUK	NM_145059.2	human	genbank	58_37c	+1	reviewed	missense	c.166	p.S56R	1.000	NULL	HMMPfam_GHMP_kinases_N,HMMPfam_Fucokinase,HMMPfam_GHMP_kinases_C,superfamily_Ribosomal protein S5 domain 2-like,superfamily_GHMP Kinase C-terminal domain	-	no_errors
GPATCH2	0	genome.wustl.edu	37	1	217793197	217793197	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	1	217793197	217793197	T	C	SNP	GPATCH2	NM_018040.2	human	genbank	58_37c	-1	provisional	missense	c.701	p.E234G	1.000	NULL	HMMPfam_G-patch,HMMSmart_SM00443	-	no_errors
GPR98	0	genome.wustl.edu	37	5	89970042	89970042	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	5	89970042	89970042	C	T	SNP	GPR98	NM_032119.3	human	genbank	58_37c	+1	reviewed	missense	c.5101	p.H1701Y	1.000	NULL	HMMPfam_GPS,PatternScan_LIPOYL,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMPfam_EPTP,PatternScan_A_DEAMINASE,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors
IGFBP2	0	genome.wustl.edu	37	2	217525400	217525400	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	2	217525400	217525400	T	C	SNP	IGFBP2	NM_000597.2	human	genbank	58_37c	+1	validated	missense	c.563	p.L188P	1.000	NULL	HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain,HMMPfam_IGFBP,HMMSmart_SM00121,superfamily_Growth factor receptor domain,PatternScan_IGFBP_N_1	-	no_errors
IGHG3	0	genome.wustl.edu	37	14	106234188	106234188	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	14	106234188	106234188	A	G	SNP	IGHG3	ENST00000390550	human	ensembl	58_37c	-1	known	silent	c.1173	p.C391	1.000	NULL	PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
KIAA0430	0	genome.wustl.edu	37	16	15702217	15702217	+	Silent	SNP	T	T	A	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	16	15702217	15702217	T	A	SNP	KIAA0430	NM_014647.3	human	genbank	58_37c	-1	validated	silent	c.4113	p.T1371	0.007	NULL	HMMSmart_SM00360,HMMPfam_DUF537,superfamily_RNA-binding domain RBD	-	no_errors
KIF13B	0	genome.wustl.edu	37	8	28981618	28981618	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	8	28981618	28981618	C	T	SNP	KIF13B	NM_015254.3	human	genbank	58_37c	-1	validated	missense	c.3275	p.R1092H	1.000	NULL	HMMPfam_FHA,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_SMAD/FHA domain,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Cap-Gly domain	-	no_errors
KIF14	0	genome.wustl.edu	37	1	200584501	200584501	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	1	200584501	200584501	C	A	SNP	KIF14	NM_014875.2	human	genbank	58_37c	-1	validated	missense	c.1349	p.G450V	1.000	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540	HMMPfam_FHA,HMMSmart_FHA,HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SMAD_FHA,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540	-	no_errors
L3MBTL	0	genome.wustl.edu	37	20	42161475	42161475	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	20	42161475	42161475	G	A	SNP	L3MBTL	ENST00000445228	human	ensembl	58_37c	+1	known	missense	c.149	p.R50H	0.000	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT	HMMPfam_zf-C2HC,HMMPfam_MBT,HMMSmart_SM00561,superfamily_CCHHC domain,superfamily_Tudor/PWWP/MBT	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
LOC100287031	0	genome.wustl.edu	37	20	42143725	42143725	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	20	42143725	42143725	G	A	SNP	LOC100287031	XM_002343705.1	human	genbank	58_37c	-1	model	missense	c.187	p.R63C	0.386	NULL	NULL	-	no_errors
LOC730005	0	genome.wustl.edu	37	22	30921905	30921905	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	22	30921905	30921905	C	T	SNP	LOC730005	XM_001132040.2	human	genbank	58_37c	-1	model	missense	c.679	p.E227K	0.996	HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C	HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C,HMMPfam_CRAL_TRIO_N,superfamily_Sec14p_like_N,superfamily_SSF101576	-	no_errors
MKI67	0	genome.wustl.edu	37	10	129903220	129903220	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	10	129903220	129903220	T	C	SNP	MKI67	NM_002417.4	human	genbank	58_37c	-1	reviewed	missense	c.6884	p.N2295S	0.000	HMMPfam_K167R	HMMPfam_FHA,HMMSmart_SM00240,superfamily_SMAD/FHA domain,HMMPfam_K167R	-	no_errors
MSI1	0	genome.wustl.edu	37	12	120794783	120794783	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	12	120794783	120794783	G	A	SNP	MSI1	NM_002442.2	human	genbank	58_37c	-1	reviewed	missense	c.574	p.P192S	0.997	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
MYO3A	0	genome.wustl.edu	37	10	26446238	26446238	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	10	26446238	26446238	G	A	SNP	MYO3A	NM_017433.4	human	genbank	58_37c	+1	reviewed	splice_site	c.2794-1	e24-1	1.000	-	-	-	no_errors
NLRP8	0	genome.wustl.edu	37	19	56466488	56466488	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	19	56466488	56466488	C	T	SNP	NLRP8	NM_176811.2	human	genbank	58_37c	+1	provisional	missense	c.1064	p.P355L	0.001	HMMPfam_NACHT	HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NRG1	0	genome.wustl.edu	37	8	32620793	32620793	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	8	32620793	32620793	G	T	SNP	NRG1	NM_013960.3	human	genbank	58_37c	+1	reviewed	missense	c.1326	p.Q442H	1.000	HMMPfam_Neuregulin	HMMPfam_Neuregulin,HMMSmart_IGc2,HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_ig,superfamily_SSF48726,superfamily_SSF57196	-	no_errors
OR5P2	0	genome.wustl.edu	37	11	7818383	7818384	+	In_Frame_Ins	INS	-	-	ATATGGTTACCAGGTAGATGC	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	11	7818383	7818384	-	ATATGGTTACCAGGTAGATGC	INS	OR5P2	NM_153444.1	human	genbank	58_37c	-1	provisional	in_frame_ins	c.107_106	p.36in_frame_insCIYLVTI	0.001:0.001	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR7E91P	0	genome.wustl.edu	37	2	71256356	71256356	+	RNA	SNP	C	C	T	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	2	71256356	71256356	C	T	SNP	OR7E91P	NR_002185.2	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.743	-	-	-	pseudogene
PCDHA1	0	genome.wustl.edu	37	5	140167729	140167729	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	5	140167729	140167729	G	A	SNP	PCDHA1	NM_018900.2	human	genbank	58_37c	+1	reviewed	silent	c.1854	p.A618	0.009	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PSIP1	0	genome.wustl.edu	37	9	15490026	15490026	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	9	15490026	15490026	C	A	SNP	PSIP1	NM_001128217.1	human	genbank	58_37c	-1	validated	missense	c.246	p.W82C	1.000	superfamily_Tudor/PWWP/MBT	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT	-	no_errors
SCRN3	0	genome.wustl.edu	37	2	175292581	175292593	+	Frame_Shift_Del	DEL	TCAAATTTATCAG	TCAAATTTATCAG	-	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	TCAAATTTATCAG	TCAAATTTATCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	2	175292581	175292593	TCAAATTTATCAG	-	DEL	SCRN3	NM_024583.3	human	genbank	58_37c	+1	validated	frame_shift_del	c.1233_1245	p.Y414fs	0.995:0.989:0.991:0.997:1.000:1.000:1.000:1.000:1.000:0.984:0.007:0.000:0.001	NULL	NULL	-	no_errors
SYT8	0	genome.wustl.edu	37	11	1855822	1855822	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	11	1855822	1855822	G	T	SNP	SYT8	NM_138567.3	human	genbank	58_37c	+1	validated	missense	c.21	p.W7C	0.000	NULL	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	-	no_errors
TPTE2	0	genome.wustl.edu	37	13	19999954	19999955	+	Frame_Shift_Ins	INS	-	-	GCGAA	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	13	19999954	19999955	-	GCGAA	INS	TPTE2	ENST00000382977	human	ensembl	58_37c	-1	known	frame_shift_ins	c.961_962	p.R321fs	0.013:0.001	NULL	HMMPfam_PTEN_C2,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
ZNF451	0	genome.wustl.edu	37	6	57012098	57012098	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JE-01A-11D-A13L-09	TCGA-D8-A1JE-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb34512b-2432-4256-968c-d7fdf38f126a	35afe2e2-1bdd-49ce-ba61-8a6f98749a17	6	57012098	57012098	C	A	SNP	ZNF451	NM_001031623.2	human	genbank	58_37c	+1	validated	missense	c.1215	p.S405R	0.977	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
