Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ARID1A	0	genome.wustl.edu	37	1	27087886	27087892	+	Frame_Shift_Del	DEL	CCACCTC	CCACCTC	-	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	CCACCTC	CCACCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	1	27087886	27087892	CCACCTC	-	DEL	ARID1A	NM_006015.4	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.2173_2179	p.P725fs	1.000:1.000:1.000:1.000:1.000:0.997:1.000	NULL	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like	-	no_errors
ARID1A	0	genome.wustl.edu	37	1	27087894	27087899	+	In_Frame_Del	DEL	GCCACC	GCCACC	-	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	GCCACC	GCCACC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	1	27087894	27087899	GCCACC	-	DEL	ARID1A	NM_006015.4	human	genbank	58_37c	+1	reviewed	in_frame_del	c.2181_2186	p.PP728in_frame_del	1.000:1.000:1.000:0.539:0.995:1.000	NULL	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like	-	no_errors
C1orf112	0	genome.wustl.edu	37	1	169770068	169770068	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	1	169770068	169770068	C	A	SNP	C1orf112	NM_018186.2	human	genbank	58_37c	+1	predicted	missense	c.22	p.H8N	0.997	NULL	NULL	-	no_errors
CCDC136	0	genome.wustl.edu	37	7	128455958	128455958	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	7	128455958	128455958	C	T	SNP	CCDC136	ENST00000494552	human	ensembl	58_37c	+1	known	missense	c.2966	p.T989I	0.976	NULL	superfamily_Prefoldin,superfamily_Spectrin repeat	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CCDC19	0	genome.wustl.edu	37	1	159858227	159858227	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	1	159858227	159858227	C	A	SNP	CCDC19	NM_012337.2	human	genbank	58_37c	-1	validated	missense	c.332	p.R111L	0.954	NULL	NULL	-	no_errors
CDK3	0	genome.wustl.edu	37	17	73998015	73998015	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	17	73998015	73998015	G	A	SNP	CDK3	NM_001258.2	human	genbank	58_37c	+1	validated	silent	c.177	p.K59	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CWC27	0	genome.wustl.edu	37	5	64081367	64081367	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	5	64081367	64081367	C	T	SNP	CWC27	NM_005869.2	human	genbank	58_37c	+1	validated	silent	c.456	p.D152	0.588	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like	HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1,superfamily_Cyclophilin-like	-	no_errors
DICER1	0	genome.wustl.edu	37	14	95562728	95562728	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	14	95562728	95562728	C	T	SNP	DICER1	NM_030621.3	human	genbank	58_37c	-1	reviewed	missense	c.4529	p.C1510Y	1.000	HMMPfam_Ribonuclease_3,HMMSmart_RIBOc,superfamily_RNase_III	HMMPfam_Ribonuclease_3,HMMSmart_RIBOc,PatternScan_RNASE_3_1,superfamily_RNase_III,HMMPfam_dsrm,HMMSmart_DSRM,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_PAZ,HMMPfam_dsRNA_bind,HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF101690,superfamily_SSF52540,superfamily_SSF54768	-	no_errors
DMRTB1	0	genome.wustl.edu	37	1	53927225	53927225	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	1	53927225	53927225	G	A	SNP	DMRTB1	NM_033067.1	human	genbank	58_37c	+1	provisional	silent	c.657	p.P219	0.000	NULL	HMMPfam_DM,HMMSmart_DM,PatternScan_DM_1,superfamily_DM_DNA_bd	-	no_errors
ENSG00000197735	0	genome.wustl.edu	37	10	134237249	134237250	+	Frame_Shift_Ins	INS	-	-	TGTG	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	10	134237249	134237250	-	TGTG	INS	ENSG00000197735	ENST00000354756	human	ensembl	58_37c	-1	known	frame_shift_ins	c.392_391	p.S131fs	0.024:0.028	NULL	NULL	-	no_start_codon:no_stop_codon
ENSG00000206252	0	genome.wustl.edu	37	22	16157827	16157827	+	Missense_Mutation	SNP	C	G	G	rs62227388	byFrequency	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	22	16157827	16157827	C	G	SNP	ENSG00000206252	ENST00000383146	human	ensembl	58_37c	-1	known	missense	c.112	p.E38Q	0.044	NULL	NULL	-	no_errors
ENSG00000245156	0	genome.wustl.edu	37	11	66039726	66039726	+	RNA	SNP	G	G	T	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	11	66039726	66039726	G	T	SNP	ENSG00000245156	ENST00000501708	human	ensembl	58_37c	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
ENSG00000248683	0	genome.wustl.edu	37	17	18575303	18575303	+	RNA	SNP	T	T	A	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	17	18575303	18575303	T	A	SNP	ENSG00000248683	ENST00000507743	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors
EXOSC7	0	genome.wustl.edu	37	3	45030632	45030632	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	3	45030632	45030632	G	A	SNP	EXOSC7	NM_015004.3	human	genbank	58_37c	+1	validated	missense	c.58	p.E20K	1.000	NULL	HMMPfam_RNase_PH,HMMPfam_RNase_PH_C,superfamily_Ribosomal protein S5 domain 2-like	-	no_errors
FAM122B	0	genome.wustl.edu	37	X	133923130	133923130	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	X	133923130	133923130	A	G	SNP	FAM122B	NM_145284.5	human	genbank	58_37c	-1	validated	silent	c.261	p.D87	1.000	NULL	NULL	-	no_errors
FAM188B	0	genome.wustl.edu	37	7	30876302	30876302	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	7	30876302	30876302	A	G	SNP	FAM188B	NM_032222.2	human	genbank	58_37c	+1	validated	silent	c.1161	p.E387	0.988	NULL	NULL	-	no_errors
FURIN	0	genome.wustl.edu	37	15	91422703	91422703	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	15	91422703	91422703	G	A	SNP	FURIN	NM_002569.2	human	genbank	58_37c	+1	reviewed	silent	c.1083	p.T361	0.481	HMMPfam_Peptidase_S8,superfamily_Pept_S8_S53	HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Pept_S8_S53,HMMPfam_P_proprotein,HMMSmart_FU,superfamily_Gal_bind_like,superfamily_Prot_inh_propept,superfamily_Grow_fac_recept	-	no_errors
HEG1	0	genome.wustl.edu	37	3	124739694	124739694	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	3	124739694	124739694	T	G	SNP	HEG1	NM_020733.1	human	genbank	58_37c	-1	validated	missense	c.1194	p.E398D	0.075	NULL	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
IRF7	0	genome.wustl.edu	37	11	615281	615281	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	11	615281	615281	G	A	SNP	IRF7	NM_004031.2	human	genbank	58_37c	-1	reviewed	missense	c.38	p.S13F	0.000	NULL	"HMMPfam_IRF,HMMSmart_SM00348,superfamily_SMAD/FHA domain,HMMPfam_IRF-3,PatternScan_IRF,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
KLC2	0	genome.wustl.edu	37	11	66033219	66033219	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	11	66033219	66033219	C	T	SNP	KLC2	NM_001134775.1	human	genbank	58_37c	+1	validated	silent	c.1428	p.S476	0.992	NULL	HMMPfam_TPR_1,HMMPfam_Rab5-bind,PatternScan_KINESIN_LIGHT,HMMSmart_TPR,superfamily_SSF48452	-	no_errors
LOC100288282	0	genome.wustl.edu	37	15	101098984	101098984	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	15	101098984	101098984	G	A	SNP	LOC100288282	XM_002343387.1	human	genbank	58_37c	+1	model	missense	c.44	p.R15H	0.970	NULL	NULL	-	no_errors
LOC100288649	0	genome.wustl.edu	37	1	89524918	89524918	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	1	89524918	89524918	C	T	SNP	LOC100288649	XM_002342055.1	human	genbank	58_37c	+1	model	nonsense	c.61	p.Q21*	0.000	NULL	NULL	-	no_errors
LOC339240	0	genome.wustl.edu	37	17	18327131	18327131	+	RNA	SNP	A	G	G	rs2608235	byCluster	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	17	18327131	18327131	A	G	SNP	LOC339240	NR_001443.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.022	-	-	-	pseudogene
LOC389722	0	genome.wustl.edu	37	9	43876040	43876040	+	Missense_Mutation	SNP	C	C	A	rs80251176	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	9	43876040	43876040	C	A	SNP	LOC389722	XM_002342910.1	human	genbank	58_37c	+1	model	missense	c.2132	p.S711Y	0.997	superfamily_Concanavalin A-like lectins/glucanases	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_SM00282,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_GLYCO_HORMONE_BETA_1	-	no_errors
LOC642131	0	genome.wustl.edu	37	15	22473090	22473090	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	15	22473090	22473090	G	T	SNP	LOC642131	XM_001716834.1	human	genbank	58_37c	-1	model	missense	c.202	p.P68T	0.862	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
LOC645382	0	genome.wustl.edu	37	1	13413973	13413973	+	Missense_Mutation	SNP	A	A	G	rs16850103	byCluster	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	1	13413973	13413973	A	G	SNP	LOC645382	XM_002342051.1	human	genbank	58_37c	+1	model	missense	c.772	p.T258A	0.000	superfamily_RNI-like	superfamily_RNI-like	-	no_errors
LOC728054	0	genome.wustl.edu	37	16	90232893	90232893	+	RNA	SNP	C	A	A	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	16	90232893	90232893	C	A	SNP	LOC728054	XR_078660.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.933	-	-	-	pseudogene
LONRF3	0	genome.wustl.edu	37	X	118140133	118140133	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	X	118140133	118140133	A	G	SNP	LONRF3	NM_001031855.1	human	genbank	58_37c	+1	reviewed	missense	c.1465	p.K489E	1.000	HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_TPR-like,superfamily_RING/U-box	HMMPfam_TPR_1,HMMSmart_SM00184,HMMPfam_LON,HMMSmart_SM00464,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,HMMSmart_SM00028,superfamily_TPR-like,superfamily_RING/U-box	-	no_errors
MAGED1	0	genome.wustl.edu	37	X	51638615	51638615	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	X	51638615	51638615	A	T	SNP	MAGED1	NM_001005333.1	human	genbank	58_37c	+1	reviewed	missense	c.680	p.D227V	0.939	NULL	HMMPfam_MAGE	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100643088	100643088	+	Missense_Mutation	SNP	A	A	G	rs145334771	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	7	100643088	100643088	A	G	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	missense	c.9673	p.I3225V	0.000	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
NEB	0	genome.wustl.edu	37	2	152483718	152483718	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	2	152483718	152483718	T	C	SNP	NEB	NM_004543.4	human	genbank	58_37c	-1	reviewed	missense	c.9416	p.N3139S	0.958	HMMPfam_Nebulin,HMMSmart_SM00227	HMMPfam_Nebulin,HMMSmart_SM00227,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	-	no_errors
OR2L1P	0	genome.wustl.edu	37	1	248154420	248154420	+	RNA	SNP	T	T	C	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	1	248154420	248154420	T	C	SNP	OR2L1P	NR_002145.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.999	-	-	-	pseudogene
OSBPL9	0	genome.wustl.edu	37	1	52222005	52222005	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	1	52222005	52222005	C	T	SNP	OSBPL9	NM_024586.3	human	genbank	58_37c	+1	reviewed	missense	c.557	p.A186V	1.000	NULL	HMMPfam_Oxysterol_BP,HMMPfam_PH,HMMSmart_SM00233,PatternScan_OSBP,superfamily_PH domain-like	-	no_errors
PCSK5	0	genome.wustl.edu	37	9	78790192	78790192	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	9	78790192	78790192	C	G	SNP	PCSK5	ENST00000376767	human	ensembl	58_37c	+1	known	missense	c.2047	p.R683G	0.006	NULL	HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Pept_S8_S53,HMMPfam_P_proprotein,superfamily_Gal_bind_like,superfamily_Prot_inh_propept	-	no_errors
PKD1	0	genome.wustl.edu	37	16	2143858	2143858	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	16	2143858	2143858	C	A	SNP	PKD1	NM_001009944.2	human	genbank	58_37c	-1	reviewed	missense	c.10775	p.S3592I	0.995	NULL	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMPfam_LRR_1,HMMPfam_REJ,HMMPfam_WSC,HMMSmart_SM00369,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel,HMMSmart_SM00321,superfamily_C-type lectin-like,superfamily_L domain-like	-	no_errors
PPFIA1	0	genome.wustl.edu	37	11	70224272	70224272	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	11	70224272	70224272	C	T	SNP	PPFIA1	NM_003626.2	human	genbank	58_37c	+1	reviewed	missense	c.3521	p.S1174F	1.000	NULL	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2	-	no_errors
PTEN	0	genome.wustl.edu	37	10	89624272	89624273	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	10	89624272	89624273	-	A	INS	PTEN	ENST00000371953	human	ensembl	58_37c	+1	known	frame_shift_ins	c.46_47	p.Y16fs	1.000:1.000	superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
PTPRB	0	genome.wustl.edu	37	12	70928673	70928673	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	12	70928673	70928673	C	A	SNP	PTPRB	NM_001109754.1	human	genbank	58_37c	-1	reviewed	silent	c.6144	p.L2048	0.998	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_Ricin_B_lectin,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Ricin B-like lectins,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RAB1B	0	genome.wustl.edu	37	11	66039643	66039643	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	11	66039643	66039643	G	A	SNP	RAB1B	NM_030981.2	human	genbank	58_37c	+1	validated	missense	c.103	p.E35K	1.000	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMSmart_SM00177,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00176,PatternScan_SIGMA54_INTERACT_1,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMSmart_SM00177,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SCN8A	0	genome.wustl.edu	37	12	52188168	52188168	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	12	52188168	52188168	G	A	SNP	SCN8A	NM_014191.2	human	genbank	58_37c	+1	reviewed	missense	c.4538	p.G1513E	1.000	superfamily_Voltage-gated potassium channels	HMMPfam_IQ,HMMSmart_SM00015,PatternScan_ODR_DC_2_1,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
SLC17A2	0	genome.wustl.edu	37	6	25921519	25921520	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	6	25921519	25921520	-	T	INS	SLC17A2	NM_005835.2	human	genbank	58_37c	-1	validated	frame_shift_ins	c.362_361	p.M121fs	0.956:0.558	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	-	no_errors
SLC25A43	0	genome.wustl.edu	37	X	118586830	118586830	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	X	118586830	118586830	A	C	SNP	SLC25A43	ENST00000336249	human	ensembl	58_37c	+1	known	missense	c.655	p.S219R	0.999	NULL	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors
SPATA13	0	genome.wustl.edu	37	13	24860370	24860370	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	13	24860370	24860370	G	T	SNP	SPATA13	NM_153023.2	human	genbank	58_37c	+1	validated	missense	c.445	p.V149L	0.962	superfamily_SH3-domain	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),PatternScan_PROTAMINE_P1,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
TECTA	0	genome.wustl.edu	37	11	120996488	120996488	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	11	120996488	120996488	G	A	SNP	TECTA	NM_005422.2	human	genbank	58_37c	+1	reviewed	missense	c.1681	p.G561S	1.000	HMMPfam_C8	PatternScan_FA58C_2,HMMPfam_Zona_pellucida,HMMSmart_SM00241,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMPfam_NIDO,HMMSmart_SM00539,HMMSmart_SM00181,HMMSmart_SM00215,PatternScan_EGF_2,HMMPfam_C8,PatternScan_ZP_1,HMMPfam_TIL,superfamily_EGF/Laminin	-	no_errors
TRAF7	0	genome.wustl.edu	37	16	2225153	2225153	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	16	2225153	2225153	T	C	SNP	TRAF7	NM_032271.2	human	genbank	58_37c	+1	validated	splice_site	c.1386+2	e14+2	1.000	-	-	-	no_errors
VPS13C	0	genome.wustl.edu	37	15	62283988	62283988	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	15	62283988	62283988	C	T	SNP	VPS13C	NM_020821.1	human	genbank	58_37c	-1	validated	missense	c.1367	p.G456E	1.000	NULL	HMMPfam_DUF1162	-	no_errors
WFDC2	0	genome.wustl.edu	37	20	44108628	44108628	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	20	44108628	44108628	C	T	SNP	WFDC2	NM_006103.3	human	genbank	58_37c	+1	reviewed	silent	c.270	p.L90	0.032	HMMPfam_WAP,HMMSmart_SM00217,superfamily_Elafin-like	HMMPfam_WAP,HMMSmart_SM00217,superfamily_Elafin-like,PatternScan_4_DISULFIDE_CORE	-	no_errors
ZNF236	0	genome.wustl.edu	37	18	74625749	74625749	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JI-01A-11D-A13L-09	TCGA-D8-A1JI-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c6a885b-0452-492c-8829-13ba4b2ac455	011f9e39-3f8f-48df-b392-ab2963cfde84	18	74625749	74625749	C	T	SNP	ZNF236	NM_007345.3	human	genbank	58_37c	+1	validated	nonsense	c.2950	p.Q984*	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
