Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAM12	0	genome.wustl.edu	37	10	127734625	127734625	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	10	127734625	127734625	C	T	SNP	ADAM12	NM_003474.4	human	genbank	58_37c	-1	reviewed	missense	c.2003	p.G668E	1.000	HMMPfam_EGF_2	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,PatternScan_ZINC_PROTEASE,HMMPfam_ADAM_CR,HMMSmart_SM00608,HMMPfam_EGF_2,PatternScan_DISINTEGRIN_1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
AFAP1L1	0	genome.wustl.edu	37	5	148709274	148709274	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	5	148709274	148709274	C	T	SNP	AFAP1L1	NM_152406.2	human	genbank	58_37c	+1	validated	missense	c.1856	p.A619V	1.000	NULL	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
ANGPTL2	0	genome.wustl.edu	37	9	129870656	129870656	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	9	129870656	129870656	C	T	SNP	ANGPTL2	NM_012098.2	human	genbank	58_37c	-1	reviewed	missense	c.355	p.E119K	1.000	NULL	HMMPfam_Fibrinogen_C,HMMSmart_FBG,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen_a/b/g_C	-	no_errors
AOAH	0	genome.wustl.edu	37	7	36552787	36552788	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	7	36552787	36552788	-	G	INS	AOAH	ENST00000431169	human	ensembl	58_37c	-1	known	frame_shift_ins	c.1918_1917	p.Y639fs	0.000:0.000	NULL	HMMPfam_Lipase_GDSL,HMMPfam_SapB_2,HMMSmart_SM00741,superfamily_Saposin,PatternScan_EGF_1	-	no_errors
ATP2B2	0	genome.wustl.edu	37	3	10370591	10370591	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	3	10370591	10370591	G	A	SNP	ATP2B2	NM_001001331.2	human	genbank	58_37c	-1	reviewed	silent	c.3639	p.I1213	1.000	NULL	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
C3	0	genome.wustl.edu	37	19	6711025	6711025	+	Missense_Mutation	SNP	C	C	A	rs146594928	byFrequency	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	19	6711025	6711025	C	A	SNP	C3	NM_000064.2	human	genbank	58_37c	-1	reviewed	missense	c.1452	p.E484D	0.000	HMMPfam_A2M_N_2	HMMPfam_ANATO,HMMSmart_SM00104,PatternScan_ANAPHYLATOXIN_1,HMMPfam_A2M,HMMPfam_A2M_N,superfamily_Terpenoid cyclases/Protein prenyltransferases,superfamily_TIMP-like,HMMPfam_A2M_recep,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_N_2,HMMPfam_A2M_comp,superfamily_Anaphylotoxins (complement system),HMMPfam_NTR,HMMSmart_SM00643,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN	-	no_errors
C3orf79	0	genome.wustl.edu	37	3	153203844	153203844	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	3	153203844	153203844	A	C	SNP	C3orf79	NM_001101337.1	human	genbank	58_37c	+1	provisional	missense	c.173	p.H58P	0.001	NULL	NULL	-	no_errors
CLDN22	0	genome.wustl.edu	37	4	184240759	184240759	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	4	184240759	184240759	G	T	SNP	CLDN22	NM_001111319.1	human	genbank	58_37c	-1	provisional	missense	c.613	p.Q205K	0.011	NULL	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN	-	no_errors
CRIPAK	0	genome.wustl.edu	37	4	1388806	1388807	+	Frame_Shift_Ins	INS	-	-	CA	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	4	1388806	1388807	-	CA	INS	CRIPAK	NM_175918.3	human	genbank	58_37c	+1	validated	frame_shift_ins	c.507_508	p.C171fs	0.000:0.001	HMMSmart_PostSET	HMMSmart_PostSET	-	no_errors
DSPP	0	genome.wustl.edu	37	4	88536553	88536553	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	4	88536553	88536553	C	T	SNP	DSPP	ENST00000432448	human	ensembl	58_37c	+1	known	missense	c.1274	p.T425I	0.998	HMMPfam_Nitroreductase,HMMPfam_COX1,HMMPfam_DUF81,HMMPfam_Peptidase_M20,HMMPfam_CitMHS,HMMPfam_C4dic_mal_tran,HMMPfam_OPT,HMMPfam_TerC,HMMPfam_Na_H_Exchanger,HMMPfam_MFS_1,HMMPfam_DUF2339	HMMPfam_Nitroreductase,HMMPfam_COX1,HMMPfam_DUF81,HMMPfam_Peptidase_M20,HMMPfam_CitMHS,HMMPfam_C4dic_mal_tran,HMMPfam_OPT,HMMPfam_TerC,HMMPfam_Na_H_Exchanger,HMMPfam_MFS_1,HMMPfam_DUF2339	-	no_start_codon:no_stop_codon
ELP4	0	genome.wustl.edu	37	11	31653874	31653874	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	11	31653874	31653874	G	C	SNP	ELP4	NM_019040.3	human	genbank	58_37c	+1	reviewed	missense	c.849	p.K283N	0.559	HMMPfam_PAXNEB	HMMPfam_PAXNEB	-	no_errors
ENSG00000183704	0	genome.wustl.edu	37	Y	13500655	13500655	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	Y	13500655	13500655	C	G	SNP	ENSG00000183704	ENST00000331172	human	ensembl	58_37c	-1	known	missense	c.622	p.A208P	1.000	NULL	NULL	-	no_errors
FAM186A	0	genome.wustl.edu	37	12	50746243	50746243	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	12	50746243	50746243	T	G	SNP	FAM186A	NM_001145475.1	human	genbank	58_37c	-1	provisional	missense	c.4372	p.T1458P	0.000	NULL	NULL	-	no_errors
FBN2	0	genome.wustl.edu	37	5	127597566	127597566	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	5	127597566	127597566	C	T	SNP	FBN2	NM_001999.3	human	genbank	58_37c	-1	reviewed	silent	c.8226	p.G2742	1.000	superfamily_Concanavalin A-like lectins/glucanases	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FOXA1	0	genome.wustl.edu	37	14	38061884	38061890	+	Frame_Shift_Del	DEL	GTTCATG	GTTCATG	-	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	GTTCATG	GTTCATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	14	38061884	38061890	GTTCATG	-	DEL	FOXA1	NM_004496.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.105_99	p.M34fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_Fork_head_N	HMMPfam_Fork_head,HMMSmart_FH,HMMPfam_Fork_head_N,PatternScan_FORK_HEAD_1,PatternScan_FORK_HEAD_2,HMMPfam_HNF_C,superfamily_SSF46785	-	no_errors
HSPD1	0	genome.wustl.edu	37	2	198351864	198351873	+	Frame_Shift_Del	DEL	TCTGCTGTAG	TCTGCTGTAG	-	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	TCTGCTGTAG	TCTGCTGTAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	2	198351864	198351873	TCTGCTGTAG	-	DEL	HSPD1	NM_002156.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1628_1619	p.T540fs	1.000:1.000:0.998:1.000:1.000:1.000:1.000:0.999:0.542:1.000	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase,PatternScan_CHAPERONINS_CPN60,superfamily_SSF52029,superfamily_SSF54849	-	no_errors
IL4R	0	genome.wustl.edu	37	16	27353480	27353480	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	16	27353480	27353480	G	A	SNP	IL4R	NM_000418.2	human	genbank	58_37c	+1	reviewed	missense	c.109	p.D37N	0.271	superfamily_Fibronectin type III,HMMPfam_IL4Ra_N	PatternScan_HEMATOPO_REC_S_F1,superfamily_Fibronectin type III,HMMPfam_IL4Ra_N	-	no_errors
KIAA1211	0	genome.wustl.edu	37	4	57180594	57180595	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	4	57180594	57180595	-	G	INS	KIAA1211	NM_020722.1	human	genbank	58_37c	+1	validated	frame_shift_ins	c.926_927	p.E310fs	0.011:0.002	NULL	NULL	-	no_errors
KIAA1310	0	genome.wustl.edu	37	2	97302834	97302834	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	2	97302834	97302834	T	C	SNP	KIAA1310	NM_001115016.1	human	genbank	58_37c	-1	validated	silent	c.39	p.S13	0.986	NULL	superfamily_SSF53474	-	no_errors
LOC100132738	0	genome.wustl.edu	37	2	3184741	3184741	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	2	3184741	3184741	C	T	SNP	LOC100132738	XM_001714359.2	human	genbank	58_37c	+1	model	missense	c.1415	p.T472M	0.021	NULL	NULL	-	no_errors
LOC100287759	0	genome.wustl.edu	37	9	66454896	66454897	+	Frame_Shift_Ins	INS	-	-	TGTT	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	9	66454896	66454897	-	TGTT	INS	LOC100287759	XM_002342919.1	human	genbank	58_37c	-1	model	frame_shift_ins	c.59_58	p.S20fs	0.052:0.051	NULL	NULL	-	no_errors
LOC646719	0	genome.wustl.edu	37	5	36876282	36876283	+	RNA	INS	-	-	C	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	5	36876282	36876283	-	C	INS	LOC646719	XR_041070.1	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.738:0.845	-	-	-	no_errors
LOC654342	0	genome.wustl.edu	37	2	91843025	91843025	+	Splice_Site	SNP	T	T	C	rs228160	byFrequency	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	2	91843025	91843025	T	C	SNP	LOC654342	NR_027238.1	human	genbank	58_37c	-1	provisional	splice_site	c.NULL	NULL	0.177	-	-	-	pseudogene
LOC729057	0	genome.wustl.edu	37	22	16123194	16123194	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	22	16123194	16123194	G	A	SNP	LOC729057	XR_042044.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.002	-	-	-	no_errors
LRRC4	0	genome.wustl.edu	37	7	127670674	127670674	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	7	127670674	127670674	A	C	SNP	LRRC4	NM_022143.4	human	genbank	58_37c	-1	validated	missense	c.20	p.V7G	1.000	superfamily_L domain-like	HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
LTBP2	0	genome.wustl.edu	37	14	74995708	74995708	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	14	74995708	74995708	C	T	SNP	LTBP2	NM_000428.2	human	genbank	58_37c	-1	reviewed	missense	c.2105	p.G702D	1.000	HMMPfam_TB,superfamily_TB module/8-cys domain	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
MCTP1	0	genome.wustl.edu	37	5	94619756	94619756	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	5	94619756	94619756	C	A	SNP	MCTP1	NM_024717.4	human	genbank	58_37c	-1	validated	missense	c.524	p.R175M	0.319	NULL	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100643088	100643088	+	Missense_Mutation	SNP	A	A	G	rs145334771	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	7	100643088	100643088	A	G	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	missense	c.9673	p.I3225V	0.000	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
MUC21	0	genome.wustl.edu	37	6	30954919	30954919	+	Missense_Mutation	SNP	A	A	G	rs142928377	byFrequency	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	6	30954919	30954919	A	G	SNP	MUC21	NM_001010909.2	human	genbank	58_37c	+1	validated	missense	c.967	p.T323A	0.000	NULL	NULL	-	no_errors
NIPAL2	0	genome.wustl.edu	37	8	99217462	99217463	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	8	99217462	99217463	AC	-	DEL	NIPAL2	NM_024759.1	human	genbank	58_37c	-1	provisional	frame_shift_del	c.668_667	p.V223fs	1.000:1.000	HMMPfam_DUF803	HMMPfam_DUF803,superfamily_SSF103481	-	no_errors
NPAS3	0	genome.wustl.edu	37	14	34269262	34269262	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	14	34269262	34269262	G	A	SNP	NPAS3	NM_173159.2	human	genbank	58_37c	+1	reviewed	silent	c.1710	p.S570	0.991	NULL	HMMSmart_PAS,HMMPfam_HLH,HMMSmart_HLH,HMMSmart_PAC,superfamily_HLH_basic,HMMPfam_PAS_3,HMMPfam_PAS,superfamily_SSF55785	-	no_errors
PHLDB2	0	genome.wustl.edu	37	3	111632438	111632438	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	3	111632438	111632438	G	T	SNP	PHLDB2	NM_001134438.1	human	genbank	58_37c	+1	validated	missense	c.1608	p.R536S	0.991	NULL	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
PPP1CA	0	genome.wustl.edu	37	11	67166579	67166579	+	Silent	SNP	T	T	A	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	11	67166579	67166579	T	A	SNP	PPP1CA	NM_001008709.1	human	genbank	58_37c	-1	reviewed	silent	c.612	p.T204	0.746	HMMPfam_Metallophos,HMMSmart_PP2Ac,superfamily_SSF56300	HMMPfam_Metallophos,HMMSmart_PP2Ac,PatternScan_SER_THR_PHOSPHATASE,superfamily_SSF56300	-	no_errors
PXDN	0	genome.wustl.edu	37	2	1670036	1670036	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	2	1670036	1670036	G	T	SNP	PXDN	NM_012293.1	human	genbank	58_37c	-1	validated	missense	c.1241	p.A414E	1.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_LRR_1,HMMPfam_An_peroxidase,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Heme-dependent peroxidases,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
RBL1	0	genome.wustl.edu	37	20	35689643	35689643	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	20	35689643	35689643	C	T	SNP	RBL1	NM_002895.2	human	genbank	58_37c	-1	reviewed	silent	c.1113	p.L371	1.000	NULL	HMMPfam_RB_B,HMMPfam_RB_A,HMMSmart_SM00385,superfamily_Cyclin-like	-	no_errors
SEMA5B	0	genome.wustl.edu	37	3	122645475	122645475	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	3	122645475	122645475	G	T	SNP	SEMA5B	NM_001031702.2	human	genbank	58_37c	-1	validated	missense	c.900	p.F300L	1.000	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat	-	no_errors
SETD7	0	genome.wustl.edu	37	4	140454468	140454468	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	4	140454468	140454468	T	A	SNP	SETD7	NM_030648.2	human	genbank	58_37c	-1	validated	missense	c.223	p.T75S	1.000	HMMPfam_MORN,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	HMMPfam_SET,HMMSmart_SM00317,HMMPfam_MORN,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,superfamily_SET domain	-	no_errors
SLC22A10	0	genome.wustl.edu	37	11	63071594	63071594	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	11	63071594	63071594	C	T	SNP	SLC22A10	NM_001039752.3	human	genbank	58_37c	+1	validated	missense	c.1300	p.R434C	0.506	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SQRDL	0	genome.wustl.edu	37	15	45954163	45954163	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	15	45954163	45954163	A	C	SNP	SQRDL	NM_021199.2	human	genbank	58_37c	+1	provisional	missense	c.245	p.Y82S	1.000	HMMPfam_Pyr_redox_2,superfamily_SSF51905	HMMPfam_Pyr_redox_2,superfamily_SSF51905	-	no_errors
TPRX1	0	genome.wustl.edu	37	19	48305670	48305670	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	19	48305670	48305670	A	G	SNP	TPRX1	NM_198479.2	human	genbank	58_37c	-1	validated	missense	c.598	p.S200P	0.000	NULL	NULL	-	no_errors
ZMYND8	0	genome.wustl.edu	37	20	45867567	45867569	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-D8-A1XG-01A-11D-A14G-09	TCGA-D8-A1XG-10A-01D-A14G-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800ff536-a1d2-4213-b85e-7780851c6378	8e1c27de-7792-4b53-9e53-7da87ef325f7	20	45867567	45867569	TGC	-	DEL	ZMYND8	ENST00000471951	human	ensembl	58_37c	-1	known	in_frame_del	c.2603_2601	p.Q868in_frame_del	0.997:0.999:0.981	NULL	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Tudor/PWWP/MBT	-	no_errors
