Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
A2ML1	0	genome.wustl.edu	37	12	8998092	8998092	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	12	8998092	8998092	A	T	SNP	A2ML1	NM_144670.3	human	genbank	58_37c	+1	validated	nonsense	c.1531	p.K511*	0.136	HMMPfam_A2M_N_2	HMMPfam_A2M,HMMPfam_A2M_N,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_recep,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_N_2,HMMPfam_A2M_comp,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN	-	no_errors
ABL1	0	genome.wustl.edu	37	9	133729582	133729582	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	9	133729582	133729582	G	A	SNP	ABL1	NM_007313.2	human	genbank	58_37c	+1	reviewed	missense	c.268	p.D90N	1.000	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_F_actin_bind,HMMSmart_SM00808,PatternScan_PROTEIN_KINASE_ATP,superfamily_SH2 domain	-	no_errors
ACE	0	genome.wustl.edu	37	17	61557814	61557814	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	17	61557814	61557814	G	A	SNP	ACE	NM_000789.2	human	genbank	58_37c	+1	reviewed	missense	c.772	p.V258I	1.000	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_Peptidase_M2,PatternScan_ZINC_PROTEASE,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ADD2	0	genome.wustl.edu	37	2	70905967	70905967	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	2	70905967	70905967	C	T	SNP	ADD2	NM_001617.3	human	genbank	58_37c	-1	reviewed	missense	c.1252	p.A418T	0.055	NULL	HMMPfam_Aldolase_II,superfamily_AraD-like aldolase/epimerase	-	no_errors
AQP7	0	genome.wustl.edu	37	9	33395134	33395135	+	Frame_Shift_Ins	INS	-	-	CC	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	9	33395134	33395135	-	CC	INS	AQP7	NM_001170.1	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.86_85	p.L29fs	0.007:0.000	HMMPfam_MIP	HMMPfam_MIP,PatternScan_MIP,superfamily_MIP	-	no_errors
BZW1	0	genome.wustl.edu	37	2	201682951	201682951	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	2	201682951	201682951	C	T	SNP	BZW1	NM_014670.2	human	genbank	58_37c	+1	validated	silent	c.654	p.L218	0.974	superfamily_ARM-type_fold	HMMPfam_W2,superfamily_ARM-type_fold	-	no_errors
C10orf96	0	genome.wustl.edu	37	10	118100287	118100287	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	10	118100287	118100287	G	C	SNP	C10orf96	NM_198515.2	human	genbank	58_37c	+1	validated	missense	c.207	p.L69F	1.000	NULL	NULL	-	no_errors
CAMSAP1	0	genome.wustl.edu	37	9	138714464	138714464	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	9	138714464	138714464	C	A	SNP	CAMSAP1	NM_015447.3	human	genbank	58_37c	-1	validated	silent	c.2043	p.G681	0.017	NULL	superfamily_PRC-barrel domain,HMMPfam_DUF1781,superfamily_Calponin-homology domain CH-domain	-	no_errors
CHSY3	0	genome.wustl.edu	37	5	129520402	129520402	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	5	129520402	129520402	C	T	SNP	CHSY3	NM_175856.4	human	genbank	58_37c	+1	validated	nonsense	c.1567	p.Q523*	1.000	HMMPfam_CHGN	HMMPfam_CHGN,superfamily_SSF53448	-	no_errors
CRISPLD2	0	genome.wustl.edu	37	16	84888433	84888433	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	16	84888433	84888433	G	A	SNP	CRISPLD2	NM_031476.3	human	genbank	58_37c	+1	validated	missense	c.707	p.R236Q	1.000	NULL	HMMSmart_SM00198,HMMPfam_LCCL,HMMSmart_SM00603,superfamily_LCCL domain,HMMPfam_SCP,superfamily_PR-1-like,PatternScan_CRISP_2	-	no_errors
DDI1	0	genome.wustl.edu	37	11	103907556	103907556	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	11	103907556	103907556	G	A	SNP	DDI1	NM_001001711.2	human	genbank	58_37c	+1	validated	silent	c.6	p.L2	0.967	superfamily_SSF54236	HMMPfam_ubiquitin,HMMSmart_UBQ,superfamily_Pept_Aspartic,HMMPfam_Asp_protease,superfamily_SSF54236	-	no_errors
EIF2C4	0	genome.wustl.edu	37	1	36297703	36297703	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	1	36297703	36297703	G	A	SNP	EIF2C4	NM_017629.2	human	genbank	58_37c	+1	reviewed	missense	c.1162	p.E388K	1.000	NULL	HMMPfam_PAZ,HMMPfam_Piwi,superfamily_Ribonuclease H-like,HMMPfam_DUF1785,superfamily_PAZ domain	-	no_errors
EMCN	0	genome.wustl.edu	37	4	101396227	101396227	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	4	101396227	101396227	G	C	SNP	EMCN	NM_016242.3	human	genbank	58_37c	-1	validated	nonsense	c.227	p.S76*	0.002	HMMPfam_Endomucin	HMMPfam_Endomucin	-	no_errors
ENSG00000249712	0	genome.wustl.edu	37	9	139642157	139642158	+	RNA	INS	-	-	T	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	9	139642157	139642158	-	T	INS	ENSG00000249712	ENST00000512586	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.238:0.252	-	-	-	no_errors
FBXW8	0	genome.wustl.edu	37	12	117387426	117387426	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	12	117387426	117387426	C	T	SNP	FBXW8	NM_153348.2	human	genbank	58_37c	+1	reviewed	missense	c.592	p.R198C	1.000	HMMSmart_SM00320,superfamily_F-box domain	HMMSmart_SM00320,HMMPfam_F-box,HMMSmart_SM00256,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_F-box domain	-	no_errors
FERMT3	0	genome.wustl.edu	37	11	63974872	63974872	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	11	63974872	63974872	C	T	SNP	FERMT3	NM_178443.2	human	genbank	58_37c	+1	reviewed	silent	c.36	p.I12	0.913	NULL	HMMPfam_PH,HMMSmart_SM00233,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_PH domain-like	-	no_errors
HRNR	0	genome.wustl.edu	37	1	152188769	152188769	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	1	152188769	152188769	C	T	SNP	HRNR	NM_001009931.1	human	genbank	58_37c	-1	validated	missense	c.5336	p.S1779N	0.000	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
IBSP	0	genome.wustl.edu	37	4	88723821	88723821	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	4	88723821	88723821	C	T	SNP	IBSP	NM_004967.3	human	genbank	58_37c	+1	reviewed	missense	c.121	p.P41S	1.000	HMMPfam_BSP_II	HMMPfam_BSP_II	-	no_errors
IFI16	0	genome.wustl.edu	37	1	158985687	158985687	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	1	158985687	158985687	G	C	SNP	IFI16	NM_005531.2	human	genbank	58_37c	+1	reviewed	missense	c.291	p.K97N	0.000	NULL	HMMPfam_PAAD_DAPIN,HMMPfam_HIN,superfamily_DEATH_like	-	no_errors
IGKV2D-30	0	genome.wustl.edu	37	2	89976205	89976205	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	2	89976205	89976205	C	G	SNP	IGKV2D-30	ENST00000474213	human	ensembl	58_37c	+1	known	missense	c.76	p.Q26E	1.000	HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_stop_codon
KNDC1	0	genome.wustl.edu	37	10	135025332	135025332	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	10	135025332	135025332	G	C	SNP	KNDC1	NM_152643.6	human	genbank	58_37c	+1	validated	missense	c.4206	p.K1402N	0.987	superfamily_Ras GEF	HMMPfam_RasGEF_N,HMMSmart_SM00229,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,HMMSmart_SM00750	-	no_errors
KRT79	0	genome.wustl.edu	37	12	53227620	53227620	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	12	53227620	53227620	T	C	SNP	KRT79	NM_175834.2	human	genbank	58_37c	-1	reviewed	missense	c.425	p.E142G	1.000	HMMPfam_Filament	superfamily_Prefoldin,HMMPfam_Filament,PatternScan_IF	-	no_errors
KRTAP1-3	0	genome.wustl.edu	37	17	39191003	39191003	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	17	39191003	39191003	C	G	SNP	KRTAP1-3	NM_030966.1	human	genbank	58_37c	-1	reviewed	missense	c.71	p.C24S	1.000	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
LOC100132247	0	genome.wustl.edu	37	16	22545897	22545897	+	Missense_Mutation	SNP	G	G	T	rs143579045	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	16	22545897	22545897	G	T	SNP	LOC100132247	NM_001135865.1	human	genbank	58_37c	+1	validated	missense	c.1593	p.K531N	0.000	HMMPfam_NPIP	HMMPfam_NPIP	-	no_errors
LOC100288993	0	genome.wustl.edu	37	9	69777897	69777897	+	Missense_Mutation	SNP	G	G	T	rs1807418	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	9	69777897	69777897	G	T	SNP	LOC100288993	XM_002342926.1	human	genbank	58_37c	-1	model	missense	c.1960	p.P654T	0.994	NULL	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
LOC342346	0	genome.wustl.edu	37	16	4644390	4644392	+	In_Frame_Del	DEL	AGG	AGG	-	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	16	4644390	4644392	AGG	-	DEL	LOC342346	NM_001145011.1	human	genbank	58_37c	+1	predicted	in_frame_del	c.2906_2908	p.E970in_frame_del	0.000:0.001:0.028	NULL	NULL	-	no_errors
LRP1B	0	genome.wustl.edu	37	2	141806595	141806595	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	2	141806595	141806595	C	T	SNP	LRP1B	NM_018557.2	human	genbank	58_37c	-1	validated	silent	c.1749	p.Q583	1.000	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825	HMMPfam_Ldl_recept_b,HMMSmart_LY,PatternScan_ASX_HYDROXYL,HMMPfam_NHL,HMMSmart_EGF_CA,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,superfamily_SSF57196,superfamily_SSF63825	-	no_errors
LYSMD3	0	genome.wustl.edu	37	5	89814775	89814775	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	5	89814775	89814775	G	C	SNP	LYSMD3	NM_198273.1	human	genbank	58_37c	-1	validated	nonsense	c.782	p.S261*	1.000	NULL	HMMSmart_SM00257,HMMPfam_LysM	-	no_errors
MGEA5	0	genome.wustl.edu	37	10	103563692	103563692	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	10	103563692	103563692	T	A	SNP	MGEA5	NM_012215.3	human	genbank	58_37c	-1	validated	missense	c.836	p.D279V	1.000	HMMPfam_NAGidase	HMMPfam_NAGidase,superfamily_Acyl-CoA N-acyltransferases (Nat)	-	no_errors
MUC16	0	genome.wustl.edu	37	19	9076601	9076601	+	Silent	SNP	T	T	G	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	19	9076601	9076601	T	G	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	silent	c.10845	p.T3615	0.036	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MUC6	0	genome.wustl.edu	37	11	1016406	1016406	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	11	1016406	1016406	G	A	SNP	MUC6	NM_005961.2	human	genbank	58_37c	-1	validated	missense	c.6395	p.S2132F	0.014	NULL	HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,HMMSmart_SM00215,HMMPfam_C8,HMMPfam_TIL	-	no_errors
MYO1E	0	genome.wustl.edu	37	15	59523941	59523941	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	15	59523941	59523941	C	A	SNP	MYO1E	NM_004998.2	human	genbank	58_37c	-1	validated	missense	c.470	p.G157V	1.000	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_TH1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NACC1	0	genome.wustl.edu	37	19	13247176	13247176	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	19	13247176	13247176	C	G	SNP	NACC1	NM_052876.2	human	genbank	58_37c	+1	validated	silent	c.1077	p.L359	1.000	NULL	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMPfam_BEN	-	no_errors
NR3C1	0	genome.wustl.edu	37	5	142680112	142680112	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	5	142680112	142680112	G	A	SNP	NR3C1	NM_001024094.1	human	genbank	58_37c	-1	reviewed	missense	c.1688	p.T563M	0.996	superfamily_Str_ncl_receptor	HMMPfam_Hormone_recep,HMMSmart_HOLI,HMMPfam_GCR,HMMPfam_zf-C4,HMMSmart_ZnF_C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,superfamily_SSF57716	-	no_errors
PLA2G6	0	genome.wustl.edu	37	22	38509509	38509509	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	22	38509509	38509509	C	T	SNP	PLA2G6	NM_003560.2	human	genbank	58_37c	-1	reviewed	silent	c.2187	p.K729	0.997	superfamily_FabD/lysophospholipase-like	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like	-	no_errors
PNRC1	0	genome.wustl.edu	37	6	89793494	89793494	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	6	89793494	89793494	A	C	SNP	PNRC1	NM_006813.2	human	genbank	58_37c	+1	validated	missense	c.563	p.K188T	1.000	NULL	NULL	-	no_errors
RNF213	0	genome.wustl.edu	37	17	78318644	78318644	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	17	78318644	78318644	A	G	SNP	RNF213	ENST00000508628	human	ensembl	58_37c	+1	known	missense	c.6509	p.Y2170C	0.998	NULL	HMMSmart_SM00184,HMMSmart_SM00382,HMMPfam_zf-C3HC4,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_RING/U-box	-	no_errors
SCN5A	0	genome.wustl.edu	37	3	38647465	38647465	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	3	38647465	38647465	C	A	SNP	SCN5A	NM_001099404.1	human	genbank	58_37c	-1	reviewed	nonsense	c.1315	p.E439*	1.000	NULL	HMMPfam_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
SMC4	0	genome.wustl.edu	37	3	160148495	160148497	+	In_Frame_Del	DEL	AGC	AGC	-	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	AGC	AGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	3	160148495	160148497	AGC	-	DEL	SMC4	NM_001002800.1	human	genbank	58_37c	+1	validated	in_frame_del	c.2904_2906	p.A970in_frame_del	0.369:0.991:0.993	HMMPfam_SMC_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SMC_N,superfamily_Prefoldin,HMMPfam_SMC_hinge,superfamily_Smc hinge domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SMC4	0	genome.wustl.edu	37	3	160148940	160148941	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	3	160148940	160148941	AT	-	DEL	SMC4	NM_001002800.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.3061_3062	p.I1021fs	0.993:1.000	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SMC_N,superfamily_Prefoldin,HMMPfam_SMC_hinge,superfamily_Smc hinge domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SYNE1	0	genome.wustl.edu	37	6	152631933	152631933	+	Missense_Mutation	SNP	C	C	T	rs148158986	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	6	152631933	152631933	C	T	SNP	SYNE1	NM_182961.2	human	genbank	58_37c	-1	reviewed	missense	c.16786	p.V5596M	0.965	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMPfam_KASH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat	-	no_errors
TMCO3	0	genome.wustl.edu	37	13	114154394	114154394	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	13	114154394	114154394	A	T	SNP	TMCO3	NM_017905.4	human	genbank	58_37c	+1	validated	missense	c.746	p.Q249L	1.000	NULL	HMMPfam_Na_H_Exchanger	-	no_errors
TP53BP1	0	genome.wustl.edu	37	15	43701236	43701236	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	15	43701236	43701236	T	C	SNP	TP53BP1	NM_001141980.1	human	genbank	58_37c	-1	validated	missense	c.5459	p.Y1820C	1.000	HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT	HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT,HMMPfam_53-BP1_Tudor,superfamily_SSF63748	-	no_errors
VSIG1	0	genome.wustl.edu	37	X	107316026	107316026	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	X	107316026	107316026	G	C	SNP	VSIG1	NM_182607.4	human	genbank	58_37c	+1	reviewed	missense	c.532	p.E178Q	0.923	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
ZNF630	0	genome.wustl.edu	37	X	47926259	47926259	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	X	47926259	47926259	C	T	SNP	ZNF630	NM_001037735.2	human	genbank	58_37c	-1	validated	splice_site	c.15+1	e1+1	0.010	-	-	-	no_errors
ZNF816A	0	genome.wustl.edu	37	19	53453802	53453802	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	19	53453802	53453802	C	A	SNP	ZNF816A	NM_001031665.1	human	genbank	58_37c	-1	validated	missense	c.1226	p.R409I	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF48695,superfamily_SSF57667	-	no_errors
