Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ARMC6	0	genome.wustl.edu	37	19	19168318	19168318	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	19	19168318	19168318	C	A	SNP	ARMC6	ENST00000379532	human	ensembl	58_37c	+1	known	nonsense	c.1044	p.C348*	0.087	NULL	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat	-	no_start_codon
BAGE2	0	genome.wustl.edu	37	21	11058322	11058322	+	Missense_Mutation	SNP	C	C	T	rs2951027	byFrequency	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	21	11058322	11058322	C	T	SNP	BAGE2	NM_182482.2	human	genbank	58_37c	-1	validated	missense	c.2	p.R1Q	1.000	NULL	NULL	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region
BEST1	0	genome.wustl.edu	37	11	61727502	61727502	+	Missense_Mutation	SNP	A	A	G	rs147228028	byFrequency	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	11	61727502	61727502	A	G	SNP	BEST1	NM_001139443.1	human	genbank	58_37c	+1	reviewed	missense	c.907	p.T303A	1.000	HMMPfam_Bestrophin	HMMPfam_Bestrophin	-	no_errors
CCDC148	0	genome.wustl.edu	37	2	159170392	159170392	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	2	159170392	159170392	C	G	SNP	CCDC148	NM_138803.3	human	genbank	58_37c	-1	validated	missense	c.779	p.S260T	0.947	NULL	NULL	-	no_errors
CLTA	0	genome.wustl.edu	37	9	36211699	36211699	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	9	36211699	36211699	C	T	SNP	CLTA	NM_007096.3	human	genbank	58_37c	+1	reviewed	silent	c.675	p.S225	1.000	HMMPfam_Clathrin_lg_ch	HMMPfam_Clathrin_lg_ch,PatternScan_CLATHRIN_LIGHT_CHN_1,PatternScan_CLATHRIN_LIGHT_CHN_2	-	no_errors
DMD	0	genome.wustl.edu	37	X	31200885	31200885	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	X	31200885	31200885	A	T	SNP	DMD	NM_004006.2	human	genbank	58_37c	-1	reviewed	missense	c.9944	p.I3315N	1.000	HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1	HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,superfamily_Prefoldin,superfamily_t-snare proteins,HMMPfam_efhand_1,HMMPfam_efhand_2,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
E2F4	0	genome.wustl.edu	37	16	67229794	67229796	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	16	67229794	67229796	CAG	-	DEL	E2F4	NM_001950.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.918_920	p.S310in_frame_del	0.995:0.995:0.995	NULL	HMMPfam_E2F_TDP,superfamily_SSF46785	-	no_errors
ENSG00000210077	0	genome.wustl.edu	37	MT	1623	1623	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	MT	1623	1623	G	A	SNP	ENSG00000210077	ENST00000387342	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000210082	0	genome.wustl.edu	37	MT	2667	2667	+	RNA	SNP	T	T	C	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	MT	2667	2667	T	C	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000231938	0	genome.wustl.edu	37	8	144459231	144459232	+	Frame_Shift_Ins	INS	-	-	GT	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	8	144459231	144459232	-	GT	INS	ENSG00000231938	ENST00000457503	human	ensembl	58_37c	-1	known	frame_shift_ins	c.130_129	p.A43fs	0.000:0.000	NULL	NULL	-	no_start_codon:no_stop_codon
ENSG00000234719	0	genome.wustl.edu	37	16	12021521	12021521	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	16	12021521	12021521	G	A	SNP	ENSG00000234719	ENST00000399147	human	ensembl	58_37c	-1	known	silent	c.852	p.P284	0.007	HMMPfam_NPIP	HMMPfam_NPIP	-	no_errors
ENSG00000235048	0	genome.wustl.edu	37	15	29008642	29008662	+	In_Frame_Del	DEL	CCCCTCCATGGATCACCGGCA	CCCCTCCATGGATCACCGGCA	-	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	CCCCTCCATGGATCACCGGCA	CCCCTCCATGGATCACCGGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	15	29008642	29008662	CCCCTCCATGGATCACCGGCA	-	DEL	ENSG00000235048	ENST00000456510	human	ensembl	58_37c	-1	known	in_frame_del	c.601_581	p.VPVIHGG194in_frame_del	0.997:0.986:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	NULL	-	no_start_codon:no_stop_codon
ENSG00000249648	0	genome.wustl.edu	37	19	24216336	24216337	+	RNA	DEL	CT	CT	-	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	19	24216336	24216337	CT	-	DEL	ENSG00000249648	ENST00000503740	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors
ESPNP	0	genome.wustl.edu	37	1	17034456	17034463	+	RNA	DEL	GCGCGCGT	GCGCGCGT	-	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	GCGCGCGT	GCGCGCGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	1	17034456	17034463	GCGCGCGT	-	DEL	ESPNP	NR_026567.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	1.000:1.000:0.990:0.984:0.981:0.981:0.989:0.998	-	-	-	pseudogene
FAM86B1	0	genome.wustl.edu	37	8	12040786	12040786	+	RNA	SNP	C	C	G	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	8	12040786	12040786	C	G	SNP	FAM86B1	NR_003494.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
FAM90A23	0	genome.wustl.edu	37	8	7437725	7437725	+	Missense_Mutation	SNP	C	C	T	rs80165277	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	8	7437725	7437725	C	T	SNP	FAM90A23	ENST00000435609	human	ensembl	58_37c	-1	known	missense	c.842	p.G281D	0.029	NULL	NULL	-	no_errors
FAT3	0	genome.wustl.edu	37	11	92507249	92507249	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	11	92507249	92507249	G	T	SNP	FAT3	NM_001008781.2	human	genbank	58_37c	+1	validated	missense	c.4238	p.G1413V	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FRG1B	0	genome.wustl.edu	37	20	29628263	29628263	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	20	29628263	29628263	A	G	SNP	FRG1B	ENST00000278882	human	ensembl	58_37c	+1	known	missense	c.265	p.I89V	1.000	superfamily_Actin_crosslink,HMMPfam_FRG1	superfamily_Actin_crosslink,HMMPfam_FRG1	-	no_errors
HERC4	0	genome.wustl.edu	37	10	69695914	69695917	+	Frame_Shift_Del	DEL	TTTG	TTTG	-	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	TTTG	TTTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	10	69695914	69695917	TTTG	-	DEL	HERC4	NM_022079.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.2674_2671	p.Q891fs	1.000:0.985:1.000:1.000	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain	HMMPfam_RCC1,PatternScan_RCC1_2,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,superfamily_RCC1/BLIP-II	-	no_errors
HGC6.3	0	genome.wustl.edu	37	6	168376967	168376968	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	6	168376967	168376968	-	G	INS	HGC6.3	NM_001129895.1	human	genbank	58_37c	-1	predicted	frame_shift_ins	c.366_365	p.Q122fs	0.009:0.005	NULL	NULL	-	no_errors
HPR	0	genome.wustl.edu	37	16	72107693	72107694	+	Frame_Shift_Del	DEL	GT	GT	-	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	16	72107693	72107694	GT	-	DEL	HPR	ENST00000228226	human	ensembl	58_37c	+1	known	frame_shift_del	c.19_20	p.C10fs	0.010:0.011	NULL	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,superfamily_Complement control module/SCR domain	-	no_errors
JMJD6	0	genome.wustl.edu	37	17	74716578	74716578	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	17	74716578	74716578	A	C	SNP	JMJD6	NM_001081461.1	human	genbank	58_37c	-1	reviewed	missense	c.944	p.I315S	1.000	superfamily_Clavaminate synthase-like	HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like	-	no_errors
KIAA1211	0	genome.wustl.edu	37	4	57180576	57180577	+	In_Frame_Ins	INS	-	-	GGAGCGGAGGGAGCGGAG	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	4	57180576	57180577	-	GGAGCGGAGGGAGCGGAG	INS	KIAA1211	NM_020722.1	human	genbank	58_37c	+1	validated	in_frame_ins	c.908_909	p.307in_frame_insERRERR	0.000:0.000	NULL	NULL	-	no_errors
KLK13	0	genome.wustl.edu	37	19	51563338	51563338	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	19	51563338	51563338	A	G	SNP	KLK13	NM_015596.1	human	genbank	58_37c	-1	reviewed	silent	c.252	p.V84	0.997	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
LOC100286979	0	genome.wustl.edu	37	2	87355912	87355912	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	2	87355912	87355912	C	T	SNP	LOC100286979	XR_078255.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.998	-	-	-	pseudogene
LOC100289350	0	genome.wustl.edu	37	2	91955307	91955307	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	2	91955307	91955307	C	T	SNP	LOC100289350	XR_078684.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.201	-	-	-	pseudogene
LOC728666	0	genome.wustl.edu	37	6	126965011	126965011	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	6	126965011	126965011	C	T	SNP	LOC728666	XR_015645.3	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
LZTR1	0	genome.wustl.edu	37	22	21351200	21351201	+	Frame_Shift_Ins	INS	-	-	GGCACTGGACATG	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	22	21351200	21351201	-	GGCACTGGACATG	INS	LZTR1	NM_006767.3	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.2351_2352	p.D788fs	1.000:1.000	superfamily_POZ domain	HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_Kelch_2,HMMPfam_BTB	-	no_errors
MDN1	0	genome.wustl.edu	37	6	90503844	90503844	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	6	90503844	90503844	C	T	SNP	MDN1	NM_014611.1	human	genbank	58_37c	-1	provisional	missense	c.637	p.D213N	1.000	NULL	HMMSmart_SM00327,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_vWA-like	-	no_errors
MERTK	0	genome.wustl.edu	37	2	112740526	112740526	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	2	112740526	112740526	G	T	SNP	MERTK	NM_006343.2	human	genbank	58_37c	+1	reviewed	missense	c.1252	p.V418L	0.955	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
MFSD1	0	genome.wustl.edu	37	3	158543842	158543842	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	3	158543842	158543842	C	T	SNP	MFSD1	NM_022736.2	human	genbank	58_37c	+1	validated	missense	c.1327	p.R443C	0.920	superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
MLL3	0	genome.wustl.edu	37	7	151962208	151962208	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	7	151962208	151962208	G	C	SNP	MLL3	NM_170606.2	human	genbank	58_37c	-1	reviewed	missense	c.1099	p.H367D	1.000	HMMSmart_SM00184,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD	PatternScan_HMGI_Y,HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_ATPASE_ALPHA_BETA,superfamily_SET domain	-	no_errors
MRS2	0	genome.wustl.edu	37	6	24409715	24409715	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	6	24409715	24409715	G	T	SNP	MRS2	NM_020662.2	human	genbank	58_37c	+1	validated	nonsense	c.328	p.E110*	1.000	HMMPfam_CorA	HMMPfam_CorA	-	no_errors
MXRA5	0	genome.wustl.edu	37	X	3238507	3238510	+	Frame_Shift_Del	DEL	AAAG	AAAG	-	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	AAAG	AAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	X	3238507	3238510	AAAG	-	DEL	MXRA5	NM_015419.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.5219_5216	p.S1739fs	0.029:0.022:0.000:0.000	NULL	HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
NBPF10	0	genome.wustl.edu	37	1	145323667	145323667	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	1	145323667	145323667	C	G	SNP	NBPF10	NM_001039703.4	human	genbank	58_37c	+1	provisional	missense	c.3729	p.D1243E	0.002	NULL	HMMPfam_DUF1220	-	no_errors
NFAT5	0	genome.wustl.edu	37	16	69729284	69729284	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	16	69729284	69729284	T	G	SNP	NFAT5	NM_138713.2	human	genbank	58_37c	+1	reviewed	splice_site	c.4650+2	e14+2	1.000	-	-	-	no_errors
PRUNE2	0	genome.wustl.edu	37	9	79324112	79324112	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	9	79324112	79324112	A	T	SNP	PRUNE2	ENST00000426088	human	ensembl	58_37c	-1	known	missense	c.1042	p.S348T	0.344	NULL	HMMSmart_SM00516,superfamily_CRAL/TRIO domain,superfamily_Ferritin-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
PVRL1	0	genome.wustl.edu	37	11	119535677	119535678	+	In_Frame_Ins	INS	-	-	CCT	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	11	119535677	119535678	-	CCT	INS	PVRL1	NM_002855.4	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.1334_1333	p.445in_frame_insE	0.902:0.989	NULL	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin	-	no_errors
RAB27A	0	genome.wustl.edu	37	15	55497761	55497761	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	15	55497761	55497761	G	A	SNP	RAB27A	NM_004580.3	human	genbank	58_37c	-1	reviewed	missense	c.610	p.H204Y	0.857	HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RANBP2	0	genome.wustl.edu	37	2	109367878	109367878	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	2	109367878	109367878	T	G	SNP	RANBP2	NM_006267.4	human	genbank	58_37c	+1	reviewed	missense	c.1432	p.S478A	1.000	NULL	HMMPfam_Ran_BP1,HMMSmart_RanBD,HMMPfam_TPR_1,HMMPfam_zf-RanBP,HMMSmart_ZnF_RBZ,PatternScan_ZF_RANBP2_1,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1,superfamily_CSA_PPIase,superfamily_SSF48452,superfamily_SSF50729	-	no_errors
RPL10	0	genome.wustl.edu	37	X	153628945	153628945	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	X	153628945	153628945	T	C	SNP	RPL10	NM_006013.3	human	genbank	58_37c	+1	reviewed	missense	c.470	p.F157S	1.000	HMMPfam_Ribosomal_L16,superfamily_Ribosomal protein L10e	HMMPfam_Ribosomal_L16,superfamily_Ribosomal protein L10e,PatternScan_RIBOSOMAL_L10E	-	no_errors
SCN9A	0	genome.wustl.edu	37	2	167159671	167159671	+	Missense_Mutation	SNP	C	C	T	rs146758972	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	2	167159671	167159671	C	T	SNP	SCN9A	NM_002977.3	human	genbank	58_37c	-1	reviewed	missense	c.830	p.R277Q	0.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
TBC1D25	0	genome.wustl.edu	37	X	48418750	48418750	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	X	48418750	48418750	T	C	SNP	TBC1D25	NM_002536.2	human	genbank	58_37c	+1	validated	missense	c.1454	p.V485A	0.352	superfamily_Ypt/Rab-GAP domain of gyp1p	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors
THRAP3	0	genome.wustl.edu	37	1	36752151	36752151	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	1	36752151	36752151	A	C	SNP	THRAP3	NM_005119.3	human	genbank	58_37c	+1	validated	missense	c.320	p.Y107S	1.000	NULL	NULL	-	no_errors
TNRC6B	0	genome.wustl.edu	37	22	40697177	40697179	+	In_Frame_Del	DEL	GCA	GCA	-	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	GCA	GCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	22	40697177	40697179	GCA	-	DEL	TNRC6B	NM_015088.2	human	genbank	58_37c	+1	validated	in_frame_del	c.3630_3632	p.Q1214in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_Ago_hook,superfamily_SSF54928	-	no_errors
TP53	0	genome.wustl.edu	37	17	7577514	7577515	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	17	7577514	7577515	-	T	INS	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.767_766	p.T256fs	0.998:1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TRNAU1AP	0	genome.wustl.edu	37	1	28904191	28904192	+	RNA	DEL	GA	GA	-	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	1	28904191	28904192	GA	-	DEL	TRNAU1AP	NR_003109.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.000:0.007	-	-	-	no_errors
TXLNA	0	genome.wustl.edu	37	1	32657943	32657943	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	1	32657943	32657943	T	A	SNP	TXLNA	NM_175852.3	human	genbank	58_37c	+1	validated	missense	c.995	p.L332Q	1.000	HMMPfam_Taxilin	HMMPfam_Taxilin	-	no_errors
ZNF540	0	genome.wustl.edu	37	19	38103247	38103247	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	19	38103247	38103247	G	A	SNP	ZNF540	NM_152606.3	human	genbank	58_37c	+1	validated	missense	c.1066	p.E356K	0.012	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF649	0	genome.wustl.edu	37	19	52394487	52394487	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1N8-01A-11D-A142-09	TCGA-E9-A1N8-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cac57844-0e46-489b-8d94-ceea5788c050	91eb46af-a239-4482-ac32-b4a930aa91c3	19	52394487	52394487	C	G	SNP	ZNF649	NM_023074.3	human	genbank	58_37c	-1	validated	missense	c.902	p.R301T	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
