Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AP1G2	0	genome.wustl.edu	37	14	24028968	24028968	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	14	24028968	24028968	G	A	SNP	AP1G2	NM_003917.2	human	genbank	58_37c	-1	reviewed	missense	c.2348	p.S783L	0.997	superfamily_Clath_adapt	HMMPfam_Adaptin_N,HMMPfam_Alpha_adaptinC2,HMMSmart_Alpha_adaptinC2,superfamily_Clath_adapt,superfamily_ARM-type_fold	-	no_errors
ATP1B4	0	genome.wustl.edu	37	X	119496076	119496076	+	Missense_Mutation	SNP	G	G	A	rs149707237	byFrequency	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	X	119496076	119496076	G	A	SNP	ATP1B4	NM_001142447.2	human	genbank	58_37c	+1	reviewed	missense	c.53	p.R18H	0.023	NULL	HMMPfam_Na_K-ATPase,PatternScan_ATPASE_NA_K_BETA_1,PatternScan_ATPASE_NA_K_BETA_2	-	no_errors
CACNA1F	0	genome.wustl.edu	37	X	49083475	49083475	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	X	49083475	49083475	G	A	SNP	CACNA1F	NM_005183.2	human	genbank	58_37c	-1	reviewed	silent	c.1233	p.A411	0.362	NULL	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CD4	0	genome.wustl.edu	37	12	6926405	6926405	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	12	6926405	6926405	G	T	SNP	CD4	NM_000616.3	human	genbank	58_37c	+1	validated	missense	c.1065	p.E355D	0.001	HMMPfam_C2-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_C2-set,HMMPfam_ig,HMMPfam_CD4-extracel,superfamily_Immunoglobulin	-	no_errors
CDC14A	0	genome.wustl.edu	37	1	100960455	100960455	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	1	100960455	100960455	C	T	SNP	CDC14A	NM_033312.2	human	genbank	58_37c	+1	reviewed	nonsense	c.1219	p.Q407*	1.000	NULL	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
CNBD1	0	genome.wustl.edu	37	8	88365983	88365983	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	8	88365983	88365983	G	A	SNP	CNBD1	NM_173538.2	human	genbank	58_37c	+1	provisional	silent	c.1272	p.E424	0.558	HMMPfam_cNMP_binding,superfamily_cNMP_binding	HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding	-	no_errors
DGKK	0	genome.wustl.edu	37	X	50121599	50121599	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	X	50121599	50121599	G	C	SNP	DGKK	NM_001013742.1	human	genbank	58_37c	-1	validated	missense	c.2953	p.L985V	0.999	HMMPfam_DAGK_acc,HMMSmart_SM00045	HMMPfam_DAGK_acc,HMMSmart_SM00045,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_PH domain-like,superfamily_Cysteine-rich domain	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
DHRS7C	0	genome.wustl.edu	37	17	9674897	9674897	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	17	9674897	9674897	C	A	SNP	DHRS7C	NM_001105571.1	human	genbank	58_37c	-1	validated	missense	c.844	p.A282S	0.997	superfamily_NAD(P)-binding Rossmann-fold domains	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
ENSG00000198886	0	genome.wustl.edu	37	MT	11154	11154	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	MT	11154	11154	T	C	SNP	ENSG00000198886	ENST00000361381	human	ensembl	58_37c	+1	known	missense	c.395	p.I132T	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000247439	0	genome.wustl.edu	37	14	36288987	36288987	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	14	36288987	36288987	C	T	SNP	ENSG00000247439	ENST00000501776	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.070	-	-	-	no_errors
FMNL2	0	genome.wustl.edu	37	2	153417524	153417524	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	2	153417524	153417524	C	T	SNP	FMNL2	NM_052905.3	human	genbank	58_37c	+1	reviewed	missense	c.571	p.R191C	1.000	HMMPfam_Drf_GBD	HMMSmart_FH2,HMMPfam_Drf_FH3,HMMPfam_Drf_GBD,HMMPfam_FH2,superfamily_FH2_actin_bd	-	no_errors
GK2	0	genome.wustl.edu	37	4	80327715	80327715	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	4	80327715	80327715	C	G	SNP	GK2	NM_033214.2	human	genbank	58_37c	-1	validated	missense	c.1640	p.R547T	1.000	NULL	PatternScan_FGGY_KINASES_2,PatternScan_FGGY_KINASES_1,HMMPfam_FGGY_N,HMMPfam_FGGY_C,superfamily_SSF53067	-	no_errors
INTS6	0	genome.wustl.edu	37	13	51961567	51961567	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	13	51961567	51961567	C	A	SNP	INTS6	NM_012141.2	human	genbank	58_37c	-1	reviewed	missense	c.849	p.W283C	1.000	NULL	PatternScan_DEAD_ATP_HELICASE,superfamily_vWA-like	-	no_errors
KCNA4	0	genome.wustl.edu	37	11	30033317	30033317	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	11	30033317	30033317	G	T	SNP	KCNA4	NM_002233.2	human	genbank	58_37c	-1	reviewed	silent	c.909	p.S303	0.999	superfamily_Voltage-gated potassium channels	HMMSmart_SM00225,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,HMMPfam_K_channel_TID,superfamily_Voltage-gated potassium channels	-	no_errors
KIAA0408	0	genome.wustl.edu	37	6	127767979	127767979	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	6	127767979	127767979	C	A	SNP	KIAA0408	NM_014702.4	human	genbank	58_37c	-1	validated	missense	c.1485	p.W495C	0.984	NULL	NULL	-	no_errors
KIAA1731	0	genome.wustl.edu	37	11	93463081	93463081	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	11	93463081	93463081	C	T	SNP	KIAA1731	NM_033395.1	human	genbank	58_37c	+1	validated	missense	c.7613	p.S2538F	0.000	NULL	NULL	-	no_errors
KIF1A	0	genome.wustl.edu	37	2	241708612	241708612	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	2	241708612	241708612	C	T	SNP	KIF1A	NM_004321.4	human	genbank	58_37c	-1	reviewed	missense	c.1408	p.A470T	1.000	NULL	HMMPfam_FHA,HMMSmart_SM00240,HMMPfam_Kinesin,HMMSmart_SM00129,HMMPfam_PH,HMMSmart_SM00233,superfamily_SMAD/FHA domain,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_PH domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LOC390638	0	genome.wustl.edu	37	15	91577269	91577269	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	15	91577269	91577269	C	T	SNP	LOC390638	XM_002343397.1	human	genbank	58_37c	-1	model	missense	c.598	p.E200K	0.444	NULL	NULL	-	no_errors
LOC728377	0	genome.wustl.edu	37	7	143982945	143982945	+	RNA	SNP	C	A	A	rs62484804	byCluster	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	7	143982945	143982945	C	A	SNP	LOC728377	XR_078379.1	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.002	-	-	-	no_errors
LRRC8C	0	genome.wustl.edu	37	1	90179621	90179621	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	1	90179621	90179621	G	A	SNP	LRRC8C	NM_032270.4	human	genbank	58_37c	+1	validated	missense	c.1492	p.V498I	1.000	superfamily_L domain-like	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like	-	no_errors
MAP3K1	0	genome.wustl.edu	37	5	56171058	56171059	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	5	56171058	56171059	-	A	INS	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	frame_shift_ins	c.1886_1887	p.D630fs	1.000:1.000	NULL	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MAP3K1	0	genome.wustl.edu	37	5	56177011	56177014	+	Frame_Shift_Del	DEL	ATAG	ATAG	-	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	ATAG	ATAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	5	56177011	56177014	ATAG	-	DEL	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.2281_2284	p.R763fs	0.994:0.998:0.969:1.000	NULL	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MED23	0	genome.wustl.edu	37	6	131925359	131925359	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	6	131925359	131925359	A	T	SNP	MED23	NM_004830.2	human	genbank	58_37c	-1	reviewed	missense	c.1715	p.V572D	1.000	NULL	NULL	-	no_errors
NAALADL1	0	genome.wustl.edu	37	11	64822123	64822123	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	11	64822123	64822123	C	T	SNP	NAALADL1	NM_005468.2	human	genbank	58_37c	-1	validated	missense	c.691	p.E231K	0.413	HMMPfam_PA,superfamily_Transferrin receptor ectodomain apical domain	HMMPfam_PA,HMMPfam_TFR_dimer,superfamily_Transferrin receptor ectodomain C-terminal domain,HMMPfam_Peptidase_M28,PatternScan_PROTEIN_KINASE_ATP,superfamily_Transferrin receptor ectodomain apical domain,superfamily_Zn-dependent exopeptidases	-	no_errors
OR2T35	0	genome.wustl.edu	37	1	248801953	248801954	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	1	248801953	248801954	-	T	INS	OR2T35	NM_001001827.1	human	genbank	58_37c	-1	provisional	frame_shift_ins	c.607_606	p.C202fs	0.101:0.095	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PLXNA3	0	genome.wustl.edu	37	X	153694159	153694159	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	X	153694159	153694159	G	A	SNP	PLXNA3	NM_017514.3	human	genbank	58_37c	+1	reviewed	missense	c.2501	p.G834D	0.918	HMMPfam_PSI,HMMSmart_PSI	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_IPT,HMMSmart_PSI,superfamily_Rho_GAP,HMMPfam_Plexin_cytopl,superfamily_Ig_E-set,superfamily_Plexin-like_fold	-	no_errors
PTMA	0	genome.wustl.edu	37	2	232576068	232576070	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	2	232576068	232576070	AGA	-	DEL	PTMA	NM_001099285.1	human	genbank	58_37c	+1	validated	in_frame_del	c.56_58	p.K21in_frame_del	1.000:1.000:1.000	HMMPfam_Prothymosin	HMMPfam_Prothymosin	-	no_errors
RYR3	0	genome.wustl.edu	37	15	33944994	33944994	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	15	33944994	33944994	C	T	SNP	RYR3	NM_001036.3	human	genbank	58_37c	+1	validated	silent	c.4218	p.N1406	0.980	HMMPfam_SPRY,HMMSmart_SM00449	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_efhand,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SELPLG	0	genome.wustl.edu	37	12	109017677	109017678	+	In_Frame_Ins	INS	-	-	CCA	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	12	109017677	109017678	-	CCA	INS	SELPLG	ENST00000228463	human	ensembl	58_37c	-1	known	in_frame_ins	c.407_406	p.P136in_frame_insLA	0.004:0.003	NULL	NULL	-	no_errors
TFE3	0	genome.wustl.edu	37	X	48895568	48895568	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	X	48895568	48895568	G	A	SNP	TFE3	NM_006521.4	human	genbank	58_37c	-1	reviewed	silent	c.852	p.P284	0.111	NULL	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	-	no_errors
TRIML1	0	genome.wustl.edu	37	4	189068024	189068024	+	Missense_Mutation	SNP	C	C	T	rs145337493	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	4	189068024	189068024	C	T	SNP	TRIML1	NM_178556.3	human	genbank	58_37c	+1	provisional	missense	c.905	p.S302L	0.998	HMMSmart_PRY	HMMSmart_RING,HMMPfam_SPRY,HMMSmart_PRY,PatternScan_ZF_RING_1,HMMSmart_SPRY,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
TTLL7	0	genome.wustl.edu	37	1	84385515	84385515	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	1	84385515	84385515	C	T	SNP	TTLL7	NM_024686.4	human	genbank	58_37c	-1	validated	missense	c.1367	p.R456Q	1.000	NULL	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
ZNF440	0	genome.wustl.edu	37	19	11942981	11942981	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	19	11942981	11942981	C	T	SNP	ZNF440	NM_152357.2	human	genbank	58_37c	+1	validated	silent	c.990	p.H330	0.081	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF800	0	genome.wustl.edu	37	7	127014790	127014790	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E9-A1R6-01A-11D-A14G-09	TCGA-E9-A1R6-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8a1805d-a43a-4433-a90b-01715e8cc554	760438b7-1942-4d0b-abf0-8b7a3ca51171	7	127014790	127014790	T	C	SNP	ZNF800	ENST00000265827	human	ensembl	58_37c	-1	known	silent	c.600	p.T200	0.997	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
