Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
C1orf57	0	genome.wustl.edu	37	1	233092096	233092096	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	1	233092096	233092096	A	G	SNP	C1orf57	NM_032324.1	human	genbank	58_37c	+1	provisional	silent	c.201	p.L67	0.015	HMMSmart_SM00382,HMMPfam_DUF265,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,HMMPfam_DUF265,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CCDC14	0	genome.wustl.edu	37	3	123663791	123663791	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	3	123663791	123663791	T	C	SNP	CCDC14	NM_022757.4	human	genbank	58_37c	-1	validated	missense	c.1269	p.I423M	0.797	NULL	PatternScan_COPPER_BLUE	-	no_errors
CCDC74A	0	genome.wustl.edu	37	2	132288159	132288159	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	2	132288159	132288159	C	T	SNP	CCDC74A	NM_138770.1	human	genbank	58_37c	+1	provisional	silent	c.303	p.P101	0.638	NULL	NULL	-	no_errors
CCNYL2	0	genome.wustl.edu	37	10	42924561	42924594	+	Frame_Shift_Del	DEL	CACCTTTGCTTGATATGATAATATAGTGCCAAGG	CACCTTTGCTTGATATGATAATATAGTGCCAAGG	-	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	CACCTTTGCTTGATATGATAATATAGTGCCAAGG	CACCTTTGCTTGATATGATAATATAGTGCCAAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	10	42924561	42924594	CACCTTTGCTTGATATGATAATATAGTGCCAAGG	-	DEL	CCNYL2	ENST00000426433	human	ensembl	58_37c	-1	known	frame_shift_del	c.471_438	p.D146fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997:0.995:1.000:1.000:0.999:1.000:0.996:0.996:0.999	HMMSmart_CYCLIN,superfamily_Cyclin_like	HMMSmart_CYCLIN,HMMPfam_Cyclin_N,superfamily_Cyclin_like	-	no_errors
CLEC18C	0	genome.wustl.edu	37	16	70211379	70211379	+	Missense_Mutation	SNP	C	C	T	rs150702800	byFrequency	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	16	70211379	70211379	C	T	SNP	CLEC18C	NM_173619.2	human	genbank	58_37c	+1	validated	missense	c.452	p.T151M	0.997	HMMSmart_SM00198,HMMPfam_SCP,superfamily_PR-1-like	HMMSmart_SM00198,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_SCP,superfamily_PR-1-like,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1	-	no_errors
DCHS1	0	genome.wustl.edu	37	11	6662745	6662746	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	11	6662745	6662746	-	CAG	INS	DCHS1	NM_003737.2	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.100_99	p.33in_frame_insL	1.000:1.000	NULL	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
DMD	0	genome.wustl.edu	37	X	32613970	32613970	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	X	32613970	32613970	T	G	SNP	DMD	NM_004006.2	human	genbank	58_37c	-1	reviewed	missense	c.1506	p.Q502H	0.988	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,superfamily_Prefoldin,superfamily_t-snare proteins,HMMPfam_efhand_1,HMMPfam_efhand_2,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
ENSG00000183704	0	genome.wustl.edu	37	Y	13524639	13524639	+	Missense_Mutation	SNP	C	C	T	rs3955847	by2Hit2Allele	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	Y	13524639	13524639	C	T	SNP	ENSG00000183704	ENST00000331172	human	ensembl	58_37c	-1	known	missense	c.34	p.E12K	1.000	NULL	NULL	-	no_errors
ENSG00000205412	0	genome.wustl.edu	37	3	147884471	147884472	+	Splice_Site	INS	-	-	C	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	3	147884471	147884472	-	C	INS	ENSG00000205412	ENST00000379950	human	ensembl	58_37c	-1	known	splice_site_ins	c.NULL	NULL	0.004:0.003	-	-	-	no_coding_region:pseudogene
ENSG00000211459	0	genome.wustl.edu	37	MT	943	943	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	MT	943	943	G	A	SNP	ENSG00000211459	ENST00000389680	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000224343	0	genome.wustl.edu	37	6	160132556	160132556	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	6	160132556	160132556	T	C	SNP	ENSG00000224343	ENST00000442642	human	ensembl	58_37c	-1	known	missense	c.395	p.Y132C	0.053	NULL	NULL	-	no_start_codon
FAM115C	0	genome.wustl.edu	37	7	143417083	143417083	+	Missense_Mutation	SNP	T	T	C	rs144677924	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	7	143417083	143417083	T	C	SNP	FAM115C	NM_001130025.1	human	genbank	58_37c	+1	validated	missense	c.931	p.C311R	0.002	NULL	NULL	-	no_errors
FAM71E2	0	genome.wustl.edu	37	19	55869880	55869903	+	Splice_Site	DEL	GCTCCTTCATCTCGCCCCATGGCT	GCTCCTTCATCTCGCCCCATGGCT	-	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	GCTCCTTCATCTCGCCCCATGGCT	GCTCCTTCATCTCGCCCCATGGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	19	55869880	55869903	GCTCCTTCATCTCGCCCCATGGCT	-	DEL	FAM71E2	ENST00000326479	human	ensembl	58_37c	-1	known	splice_site_del	c.1277-9_1277-1	e2-1	0.004:0.007:0.009:0.011:0.013:0.015:0.016:0.017:0.017:0.017:0.003:0.001:0.000:0.000:0.001:0.005:0.005:0.003:0.001:0.000:0.000:0.001:0.000:0.000	-	-	-	no_errors
GATA3	0	genome.wustl.edu	37	10	8111543	8111544	+	Frame_Shift_Ins	INS	-	-	TACTGAA	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	10	8111543	8111544	-	TACTGAA	INS	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.1032_1033	p.Y345fs	0.358:1.000	HMMPfam_GATA,HMMSmart_SM00401,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
GLT8D1	0	genome.wustl.edu	37	3	52729291	52729291	+	Silent	SNP	A	A	C	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	3	52729291	52729291	A	C	SNP	GLT8D1	NM_001010983.1	human	genbank	58_37c	-1	reviewed	silent	c.840	p.A280	0.995	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
GOLGA6D	0	genome.wustl.edu	37	15	75580671	75580671	+	Missense_Mutation	SNP	G	G	C	rs76890882	byFrequency	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	15	75580671	75580671	G	C	SNP	GOLGA6D	NM_001145224.1	human	genbank	58_37c	+1	inferred	missense	c.530	p.C177S	0.999	NULL	NULL	-	no_errors
GRAMD4	0	genome.wustl.edu	37	22	47070636	47070636	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	22	47070636	47070636	C	T	SNP	GRAMD4	NM_015124.2	human	genbank	58_37c	+1	validated	silent	c.1467	p.Y489	0.994	HMMPfam_GRAM,HMMSmart_SM00568	HMMPfam_GRAM,HMMSmart_SM00568	-	no_errors
GRM6	0	genome.wustl.edu	37	5	178408703	178408703	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	5	178408703	178408703	C	T	SNP	GRM6	NM_000843.3	human	genbank	58_37c	-1	reviewed	silent	c.2589	p.T863	0.022	NULL	HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_SSF53822	-	no_errors
KIF16B	0	genome.wustl.edu	37	20	16488613	16488613	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	20	16488613	16488613	T	C	SNP	KIF16B	NM_024704.3	human	genbank	58_37c	-1	validated	missense	c.689	p.K230R	1.000	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_FHA,HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_SMAD/FHA domain,PatternScan_KINESIN_MOTOR_DOMAIN1,PatternScan_LECTIN_LEGUME_BETA,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LEKR1	0	genome.wustl.edu	37	3	156710975	156710975	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	3	156710975	156710975	A	G	SNP	LEKR1	NM_001004316.2	human	genbank	58_37c	+1	validated	missense	c.106	p.R36G	0.673	NULL	NULL	-	no_errors
LOC100131851	0	genome.wustl.edu	37	7	39873126	39873127	+	In_Frame_Ins	INS	-	-	GCG	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	7	39873126	39873127	-	GCG	INS	LOC100131851	XM_001717865.2	human	genbank	58_37c	+1	model	in_frame_ins	c.371_372	p.125in_frame_ins	0.002:0.000	NULL	NULL	-	no_errors
LOC96610	0	genome.wustl.edu	37	22	22661474	22661474	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	22	22661474	22661474	C	T	SNP	LOC96610	NR_027293.1	human	genbank	58_37c	+1	reviewed	rna	NULL	NULL	0.997	-	-	-	pseudogene
LRRC10	0	genome.wustl.edu	37	12	70004328	70004328	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	12	70004328	70004328	C	T	SNP	LRRC10	NM_201550.2	human	genbank	58_37c	-1	provisional	silent	c.291	p.L97	0.998	superfamily_SSF52058	HMMPfam_LRR_1,superfamily_SSF52058	-	no_errors
LRRC7	0	genome.wustl.edu	37	1	70397248	70397248	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	1	70397248	70397248	G	A	SNP	LRRC7	NM_020794.2	human	genbank	58_37c	+1	validated	missense	c.592	p.E198K	1.000	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_L domain-like	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_RNI-like,superfamily_L domain-like	-	no_errors
MEF2A	0	genome.wustl.edu	37	15	100252710	100252715	+	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	CAGCAG	CAGCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	15	100252710	100252715	CAGCAG	-	DEL	MEF2A	NM_005587.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1234_1239	p.QQ415in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_SRF-TF,HMMSmart_MADS,PatternScan_MADS_BOX_1,superfamily_TF_MADSbox	-	no_errors
MLL3	0	genome.wustl.edu	37	7	151932961	151932961	+	Nonsense_Mutation	SNP	G	G	A	rs2740236	byHapMap	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	7	151932961	151932961	G	A	SNP	MLL3	NM_170606.2	human	genbank	58_37c	-1	reviewed	nonsense	c.2710	p.R904*	0.982	NULL	PatternScan_HMGI_Y,HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_ATPASE_ALPHA_BETA,superfamily_SET domain	-	no_errors
MPRIP	0	genome.wustl.edu	37	17	17039562	17039564	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	17	17039562	17039564	CAG	-	DEL	MPRIP	NM_015134.2	human	genbank	58_37c	+1	validated	in_frame_del	c.534_536	p.S182in_frame_del	0.998:1.000:1.000	NULL	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	-	no_errors
NCOA3	0	genome.wustl.edu	37	20	46279837	46279839	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	20	46279837	46279839	CAG	-	DEL	NCOA3	NM_181659.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3763_3765	p.Q1258in_frame_del	0.584:0.607:0.598	NULL	HMMSmart_SM00091,HMMPfam_HLH,HMMSmart_SM00353,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_DUF1518,superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_PAS,HMMPfam_Nuc_rec_co-act,HMMPfam_SRC-1,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
NCOR2	0	genome.wustl.edu	37	12	124887058	124887059	+	In_Frame_Ins	INS	-	-	GCT	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	12	124887058	124887059	-	GCT	INS	NCOR2	NM_006312.3	human	genbank	58_37c	-1	validated	in_frame_ins	c.1532_1531	p.511in_frame_insQ	0.999:1.000	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
NEK3	0	genome.wustl.edu	37	13	52725510	52725510	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	13	52725510	52725510	C	A	SNP	NEK3	ENST00000258597	human	ensembl	58_37c	-1	known	missense	c.411	p.Q137H	0.981	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
NEURL4	0	genome.wustl.edu	37	17	7227242	7227242	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	17	7227242	7227242	G	A	SNP	NEURL4	NM_032442.2	human	genbank	58_37c	-1	validated	missense	c.2152	p.R718C	1.000	HMMPfam_Neuralized,HMMSmart_SM00588	HMMPfam_Neuralized,HMMSmart_SM00588	-	no_errors
NLRP5	0	genome.wustl.edu	37	19	56565031	56565031	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	19	56565031	56565031	G	A	SNP	NLRP5	NM_153447.4	human	genbank	58_37c	+1	reviewed	silent	c.3156	p.A1052	0.000	superfamily_SSF52047	HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH_like,superfamily_SSF52047,superfamily_SSF52540	-	no_errors
OR7C2	0	genome.wustl.edu	37	19	15053236	15053236	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	19	15053236	15053236	G	A	SNP	OR7C2	NM_012377.1	human	genbank	58_37c	+1	provisional	silent	c.936	p.E312	0.000	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR7E87P	0	genome.wustl.edu	37	11	71304933	71304935	+	In_Frame_Del	DEL	TCG	TCG	-	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	TCG	TCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	11	71304933	71304935	TCG	-	DEL	OR7E87P	ENST00000329336	human	ensembl	58_37c	+1	known	in_frame_del	c.506_508	p.V170in_frame_del	0.023:0.028:0.021	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,superfamily_SSF81321	-	no_errors
PHLDA1	0	genome.wustl.edu	37	12	76424938	76424940	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	12	76424938	76424940	TGC	-	DEL	PHLDA1	NM_007350.3	human	genbank	58_37c	-1	reviewed	in_frame_del	c.584_582	p.Q198in_frame_del	0.146:0.153:0.155	HMMSmart_PH,superfamily_SSF50729	HMMSmart_PH,superfamily_SSF50729	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1624	p.E542K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PPL	0	genome.wustl.edu	37	16	4933762	4933762	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	16	4933762	4933762	C	T	SNP	PPL	NM_002705.4	human	genbank	58_37c	-1	reviewed	missense	c.4894	p.E1632K	1.000	NULL	HMMPfam_Plectin,HMMSmart_SM00250,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat	-	no_errors
PRKAR1A	0	genome.wustl.edu	37	17	66511555	66511561	+	Frame_Shift_Del	DEL	TACCGCC	TACCGCC	-	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	TACCGCC	TACCGCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	17	66511555	66511561	TACCGCC	-	DEL	PRKAR1A	NM_002734.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.15_21	p.S5fs	0.228:0.196:0.193:0.200:0.347:0.977:0.983	NULL	HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMPfam_RIIa,HMMSmart_SM00394,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cAMP-binding domain-like	-	no_errors
PTK2	0	genome.wustl.edu	37	8	141749152	141749152	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	8	141749152	141749152	C	A	SNP	PTK2	NM_005607.3	human	genbank	58_37c	-1	reviewed	missense	c.1856	p.R619L	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_Focal_AT,superfamily_Focal_AT,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41	-	no_errors
TMC7	0	genome.wustl.edu	37	16	19070770	19070770	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	16	19070770	19070770	G	A	SNP	TMC7	NM_024847.3	human	genbank	58_37c	+1	validated	missense	c.2060	p.G687E	1.000	NULL	HMMPfam_TMC	-	no_errors
VEZF1	0	genome.wustl.edu	37	17	56056604	56056605	+	In_Frame_Ins	INS	-	-	TGC	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	17	56056604	56056605	-	TGC	INS	VEZF1	NM_007146.2	human	genbank	58_37c	-1	validated	in_frame_ins	c.1047_1046	p.353in_frame_insQ	0.934:0.940	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
WBSCR17	0	genome.wustl.edu	37	7	71175847	71175847	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	7	71175847	71175847	G	T	SNP	WBSCR17	NM_022479.1	human	genbank	58_37c	+1	reviewed	silent	c.1602	p.R534	0.927	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
ZNF384	0	genome.wustl.edu	37	12	6777070	6777072	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	12	6777070	6777072	TGC	-	DEL	ZNF384	NM_001135734.1	human	genbank	58_37c	-1	reviewed	in_frame_del	c.1544_1542	p.Q516in_frame_del	0.291:0.350:0.379	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
