Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NOC2L	26155	broad.mit.edu	37	1	892575	892575	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:892575G>A	uc001abz.3	-	3	317	c.258C>T	c.(256-258)TTC>TTT	p.F86F	NOC2L_uc001aby.3_5'UTR|NOC2L_uc009vjq.2_Silent_p.F86F	NM_015658	NP_056473	Q9Y3T9	NOC2L_HUMAN	nucleolar complex associated 2 homolog	86						nucleolus	protein binding			ovary(1)|skin(1)	2	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.86e-38)|OV - Ovarian serous cystadenocarcinoma(86;6.08e-23)|Colorectal(212;0.000161)|COAD - Colon adenocarcinoma(227;0.000194)|BRCA - Breast invasive adenocarcinoma(365;0.000475)|Kidney(185;0.00231)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0344)|Lung(427;0.2)		TCTCCTGCAGGAACTTGTAGA	0.587000													65	4					0	0	0.000781405	0	0
UBE4B	10277	broad.mit.edu	37	1	10218481	10218481	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:10218481C>T	uc001aqs.3	+	22	3707	c.2994C>T	c.(2992-2994)ACC>ACT	p.T998T	UBE4B_uc001aqr.3_Silent_p.T869T|UBE4B_uc010oai.1_RNA|UBE4B_uc010oaj.1_Silent_p.T453T	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	998					apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding			ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		ATATTAGCACCATTTTTAAAA	0.428000													66	6					0	0	0.000781405	0	0
NBPF1	55672	broad.mit.edu	37	1	16921465	16921465	+	Translation_Start_Site	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:16921465G>A	uc009vos.1	-	3	462	c.-426C>T	c.(-428--424)AACGA>AATGA		NBPF1_uc010oce.1_5'Flank	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672							cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		AGTACGATTCGTTTTCTTGTA	0.363000													15	45					0	0	0.00074312	0	0
ECE1	1889	broad.mit.edu	37	1	21563331	21563332	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:21563331_21563332CG>AT	uc001bek.2	-	12	1470_1471	c.1395_1396CG>AT	c.(1393-1398)ACCGAG>ACATAG	p.E466*	ECE1_uc001bem.2_Nonsense_Mutation_p.E450*|ECE1_uc001bej.2_Nonsense_Mutation_p.E454*|ECE1_uc001bei.2_Nonsense_Mutation_p.E463*|ECE1_uc010odl.1_Nonsense_Mutation_p.E466*|ECE1_uc009vqa.1_Nonsense_Mutation_p.E466*	NM_001397	NP_001388	P42892	ECE1_HUMAN	endothelin converting enzyme 1 isoform 1	466	Extracellular (Potential).				bradykinin catabolic process|calcitonin catabolic process|ear development|embryonic digit morphogenesis|endothelin maturation|heart development|positive regulation of receptor recycling|substance P catabolic process	early endosome|external side of plasma membrane|integral to membrane|intrinsic to endosome membrane|membrane fraction|perinuclear region of cytoplasm|plasma membrane|Weibel-Palade body	metal ion binding|metalloendopeptidase activity|protein homodimerization activity			ovary(2)|skin(1)	3		Lung NSC(340;1.14e-05)|all_lung(284;1.23e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00147)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0183)|OV - Ovarian serous cystadenocarcinoma(117;4.83e-27)|COAD - Colon adenocarcinoma(152;1.36e-06)|GBM - Glioblastoma multiforme(114;1.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000162)|STAD - Stomach adenocarcinoma(196;0.00326)|KIRC - Kidney renal clear cell carcinoma(1967;0.00755)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.206)		AGGATGATCTCGGTGGCCTGAG	0.505000													6	154					0	0	6.4e-05	0	0
EPHB2	2048	broad.mit.edu	37	1	23191380	23191380	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:23191380C>T	uc009vqj.1	+	5	1123	c.978C>T	c.(976-978)TCC>TCT	p.S326S	EPHB2_uc001bge.2_Silent_p.S326S|EPHB2_uc001bgf.2_Silent_p.S326S|EPHB2_uc010odu.1_Silent_p.S326S|hsa-mir-4253|MI0015860_5'Flank	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	326	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		CCATCCCCTCCGCGCCCCAGG	0.652000									Hereditary_Prostate_Cancer				25	4					0	0	0.00047179	0	0
ZNF683	257101	broad.mit.edu	37	1	26688454	26688454	+	Silent	SNP	G	A	A	rs146588417	byFrequency	TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:26688454G>A	uc001bmg.1	-	7	1381	c.1263C>T	c.(1261-1263)TCC>TCT	p.S421S	ZNF683_uc001bmh.1_Silent_p.S401S|ZNF683_uc009vsj.1_Silent_p.S401S	NM_173574	NP_775845	Q8IZ20	ZN683_HUMAN	zinc finger protein 683	421					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(24;2.39e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.76e-26)|Colorectal(126;1.38e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|BRCA - Breast invasive adenocarcinoma(304;0.00099)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00793)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.159)|LUSC - Lung squamous cell carcinoma(448;0.233)		GCCGGGCCCCGGAGTGCAGGC	0.647000													27	5					0	0	0.000720815	0	0
AHDC1	27245	broad.mit.edu	37	1	27874405	27874405	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:27874405A>T	uc009vsy.2	-	6	5191	c.4222T>A	c.(4222-4224)TTC>ATC	p.F1408I	AHDC1_uc009vsz.1_Missense_Mutation_p.F1408I	NM_001029882	NP_001025053	Q5TGY3	AHDC1_HUMAN	AT hook, DNA binding motif, containing 1	1408							DNA binding			central_nervous_system(1)	1		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;8.48e-25)|Colorectal(126;9.17e-09)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00192)|BRCA - Breast invasive adenocarcinoma(304;0.00259)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0291)		TCTTCCTTGAAGCCCAGTGTA	0.667000													27	6					0	0	0.000184323	0	0
AK2	204	broad.mit.edu	37	1	33478818	33478818	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:33478818G>A	uc001bwp.1	-	6	726	c.684C>T	c.(682-684)TCC>TCT	p.S228S	uc001bwn.2_Intron|AK2_uc001bwo.1_Silent_p.S228S|AK2_uc010ohq.1_Silent_p.S220S|AK2_uc009vud.1_Silent_p.S186S|AK2_uc010ohr.1_Silent_p.S180S|AK2_uc001bwq.1_Silent_p.S180S	NM_001625	NP_001616	P54819	KAD2_HUMAN	adenylate kinase 2 isoform a	228					nucleobase, nucleoside and nucleotide interconversion	mitochondrial intermembrane space	adenylate kinase activity|ATP binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)				ATGTGGCTTTGGAGAAGGCTG	0.502000													80	12					0	0	0.000781405	0	0
DLGAP3	58512	broad.mit.edu	37	1	35350619	35350619	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:35350619C>T	uc001byc.2	-	6	1960	c.1960G>A	c.(1960-1962)GAG>AAG	p.E654K		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	654					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				GAGTGGAACTCCCTCCGGCTC	0.602000													39	4					0	0	0.000781405	0	0
SFPQ	6421	broad.mit.edu	37	1	35652667	35652667	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:35652667C>G	uc001bys.2	-	9	2014	c.1921G>C	c.(1921-1923)GGT>CGT	p.G641R	SFPQ_uc001byr.2_RNA	NM_005066	NP_005057	P23246	SFPQ_HUMAN	splicing factor proline/glutamine rich	641	Poly-Gly.				alternative nuclear mRNA splicing, via spliceosome|DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix|paraspeckles	DNA binding|nucleotide binding|protein binding|protein binding|RNA binding		SFPQ/TFE3(6)	kidney(4)|soft_tissue(2)|ovary(1)|skin(1)	8		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.196)				GCTTCATAACCTATGCCACCA	0.463000			T	TFE3	papillary renal cell								5	65					0	0	0.000602214	0	0
CYP4B1	1580	broad.mit.edu	37	1	47276620	47276620	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:47276620G>A	uc001cqm.3	+	2	405	c.321G>A	c.(319-321)GGG>GGA	p.G107G	CYP4B1_uc009vyl.1_5'UTR|CYP4B1_uc001cqn.3_Silent_p.G107G|CYP4B1_uc009vym.2_Silent_p.G107G|CYP4B1_uc010omk.1_Intron|CYP4B1_uc010oml.1_5'Flank	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	107					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					ACAGCCGTGGGGGTGAGGAGA	0.567000													14	0					0	0	0.00074312	0	0
DPYD	1806	broad.mit.edu	37	1	97544568	97544568	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:97544568C>T	uc001drv.2	-	23	3179	c.3042G>A	c.(3040-3042)AAG>AAA	p.K1014K		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	1014					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	GTACGCCTCTCTTTGGTTCAT	0.428000													32	9					0	0	0.000953801	0	0
C1orf194	127003	broad.mit.edu	37	1	109650609	109650610	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:109650609_109650610CC>TT	uc009wev.2	-	2	199_200	c.131_132GG>AA	c.(130-132)TGG>TAA	p.W44*	C1orf194_uc001dwp.3_Intron|C1orf194_uc009wew.2_Nonsense_Mutation_p.W32*	NM_001122961	NP_001116433	Q5T5A4	CA194_HUMAN	hypothetical protein LOC127003	44										ovary(1)	1						TGAGCCGACTCCAGGGTTCCTG	0.475000													101	6					0	0	6.4e-05	0	0
KIAA1324	57535	broad.mit.edu	37	1	109714505	109714505	+	Missense_Mutation	SNP	G	C	C	rs149200172	byFrequency	TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:109714505G>C	uc001dwq.2	+	5	621	c.485G>C	c.(484-486)CGG>CCG	p.R162P	KIAA1324_uc009wex.1_Missense_Mutation_p.R162P|KIAA1324_uc009wey.2_Missense_Mutation_p.R162P|KIAA1324_uc010ovg.1_Missense_Mutation_p.R60P	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor	162	Extracellular (Potential).				macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		TGGGTTCCCCGGGGCGACTAC	0.552000													4	270					0	0	0.000602214	0	0
PSRC1	84722	broad.mit.edu	37	1	109824279	109824280	+	Silent	DNP	GG	TT	TT			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:109824279_109824280GG>TT	uc001dxg.2	-	4	602_603	c.480_481CC>AA	c.(478-483)CTCCGG>CTAAGG	p.160_161LR>LR	PSRC1_uc001dxb.2_5'UTR|PSRC1_uc001dxc.2_Silent_p.160_161LR>LR|PSRC1_uc001dxd.2_Silent_p.160_161LR>LR|PSRC1_uc001dxe.2_Silent_p.160_161LR>LR|PSRC1_uc001dxf.2_Silent_p.160_161LR>LR|PSRC1_uc001dxh.2_Silent_p.160_161LR>LR|PSRC1_uc001dxi.2_Silent_p.160_161LR>LR|PSRC1_uc001dxj.2_Silent_p.160_161LR>LR	NM_001032290	NP_001027461	Q6PGN9	PSRC1_HUMAN	proline/serine-rich coiled-coil 1 isoform c	160_161	4 X 4 AA repeats of P-X-X-P.				cell division|microtubule bundle formation|mitotic metaphase plate congression|negative regulation of cell growth|positive regulation of microtubule polymerization|positive regulation of transcription, DNA-dependent|regulation of mitotic spindle organization	cytosol|midbody|spindle pole	microtubule binding				0		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0286)|Lung(183;0.0658)|COAD - Colon adenocarcinoma(174;0.112)|Epithelial(280;0.188)|all cancers(265;0.213)		GATGTAGCCCGGAGAGCCCTGA	0.584000													7	207					0	0	6.4e-05	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458000	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			96	13					0	0	0.000781405	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144952265	144952265	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:144952265C>T	uc001elw.3	-	4	745	c.454G>A	c.(454-456)GAA>AAA	p.E152K	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.E218K|PDE4DIP_uc001emc.1_Missense_Mutation_p.E152K|PDE4DIP_uc001emd.1_Missense_Mutation_p.E152K|PDE4DIP_uc001emg.1_Missense_Mutation_p.E152K|PDE4DIP_uc001emh.2_Missense_Mutation_p.E289K	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	152					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		GGTACATCTTCCCAGTTTTTG	0.537000			T	PDGFRB	MPD								17	86					0	0	0.000409698	0	0
POLR3C	10623	broad.mit.edu	37	1	145601837	145601837	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:145601837C>G	uc001eoh.2	-	6	855	c.694G>C	c.(694-696)GGG>CGG	p.G232R	NBPF10_uc001emp.3_Intron|POLR3C_uc001eog.2_Missense_Mutation_p.G245R|POLR3C_uc001eoi.2_RNA|POLR3C_uc009wix.2_Missense_Mutation_p.G232R	NM_006468	NP_006459	Q9BUI4	RPC3_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	232				KRPKYTTDNKEPIPDDGIYWQA -> RDQNILQITRXPFQM MGFIGRP (in Ref. 1; AAB63675).	innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|regulation of transcription from RNA polymerase III promoter|response to virus	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity			ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)		Epithelial(2;7.55e-13)			CAATAAATCCCATCATCTGGA	0.433000													4	229					0	0	0.000602214	0	0
S100A13	6284	broad.mit.edu	37	1	153598826	153598826	+	Silent	SNP	C	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:153598826C>A	uc001fcf.3	-	2	282	c.123G>T	c.(121-123)CTG>CTT	p.L41L	S100A13_uc001fcg.2_Silent_p.L41L|S100A13_uc009woh.2_Silent_p.L41L|S100A13_uc001fch.2_Silent_p.L41L|S100A13_uc001fci.2_Silent_p.L41L|S100A13_uc001fcj.2_Silent_p.L41L|S100A1_uc001fck.1_5'Flank|S100A1_uc001fcl.1_5'Flank	NM_001024213	NP_001019384	Q99584	S10AD_HUMAN	S100 calcium binding protein A13	41	EF-hand 1.				interleukin-1 alpha secretion|mast cell degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade	cytosol|extracellular space|nucleus|perinuclear region of cytoplasm	calcium ion binding|copper ion binding|fibroblast growth factor 1 binding|lipid binding|protein homodimerization activity|RAGE receptor binding|zinc ion binding				0	all_lung(78;1.84e-32)|Lung NSC(65;6.67e-31)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)		Amlexanox(DB01025)	GCTGGGTAACCAGCTCTTTGA	0.522000													10	279					3.86212e-05	0.000499105	0.000673444	1	0
MUC1	4582	broad.mit.edu	37	1	155161850	155161850	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:155161850C>T	uc010pft.1	-	2	349	c.283G>A	c.(283-285)GGA>AGA	p.G95R	RAG1AP1_uc010pey.1_Intron|MUC1_uc001fhy.2_5'Flank|MUC1_uc001fhz.2_5'Flank|MUC1_uc010pfb.1_Intron|MUC1_uc010pfc.1_Intron|MUC1_uc009wph.2_Intron|MUC1_uc010pfd.1_Intron|MUC1_uc010pfe.1_Intron|MUC1_uc010pff.1_Intron|MUC1_uc009wpi.2_Intron|MUC1_uc010pfg.1_Intron|MUC1_uc010pfh.1_Intron|MUC1_uc010pfi.1_Intron|MUC1_uc010pfj.1_Intron|MUC1_uc010pfk.1_Intron|MUC1_uc010pfl.1_Intron|MUC1_uc001fin.2_Intron|MUC1_uc009wpk.2_Intron|MUC1_uc001fip.2_Intron|MUC1_uc009wqg.2_Intron|MUC1_uc009wpo.2_Intron|MUC1_uc009wps.2_Intron|MUC1_uc009wpt.2_Intron|MUC1_uc001fic.2_Intron|MUC1_uc009wpu.2_Intron|MUC1_uc009wpq.2_Intron|MUC1_uc009wpv.2_Intron|MUC1_uc001fim.2_Intron|MUC1_uc001fib.2_Intron|MUC1_uc009wpw.2_Intron|MUC1_uc001fie.2_Intron|MUC1_uc009wpr.2_Intron|MUC1_uc001fig.2_Intron|MUC1_uc001fif.2_Intron|MUC1_uc009wpx.2_Intron|MUC1_uc001fid.2_Intron|MUC1_uc009wpj.2_Intron|MUC1_uc001fij.2_Intron|MUC1_uc009wpy.2_Intron|MUC1_uc010pfm.1_Intron|MUC1_uc001fiq.2_Intron|MUC1_uc009wpz.2_Intron|MUC1_uc010pfn.1_Intron|MUC1_uc009wqa.2_Intron|MUC1_uc010pfo.1_Intron|MUC1_uc010pfp.1_Intron|MUC1_uc001fii.2_Intron|MUC1_uc001fih.2_Intron|MUC1_uc001fia.2_Intron|MUC1_uc009wqc.2_Intron|MUC1_uc009wqd.2_Intron|MUC1_uc009wqb.2_Intron|MUC1_uc010pfq.1_Intron|MUC1_uc010pfr.1_Intron|MUC1_uc001fit.2_Intron|MUC1_uc009wqe.2_Intron|MUC1_uc001fil.2_Intron|MUC1_uc009wpm.2_Intron|MUC1_uc009wpp.2_Intron|MUC1_uc010pfs.1_Intron|MUC1_uc001fik.2_Intron|MUC1_uc001fio.2_Intron|MUC1_uc009wqf.2_Intron|MUC1_uc009wpl.2_Intron|MUC1_uc009wpn.2_Intron|MUC1_uc001fis.1_Intron|uc009wqh.2_5'Flank|MUC1_uc001fiv.1_Missense_Mutation_p.G104R|MUC1_uc001fiw.1_Missense_Mutation_p.G95R			P15941	MUC1_HUMAN	SubName: Full=MUC1 isoform M13;	95	Extracellular (Potential).|2; approximate.					apical plasma membrane|cell surface|cytoplasm|extracellular region|integral to plasma membrane|nucleus	protein binding			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;5.31e-10)|all cancers(21;2.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			ACATCCTGTCCCCAGGTGGCA	0.677000			T	IGH@	B-NHL								35	3					0	0	0.000409698	0	0
PRCC	5546	broad.mit.edu	37	1	156756574	156756574	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:156756574C>T	uc001fqa.2	+	3	981	c.691C>T	c.(691-693)CCT>TCT	p.P231S	PRCC_uc001fqb.2_Missense_Mutation_p.P231S	NM_005973	NP_005964	Q92733	PRCC_HUMAN	papillary renal cell carcinoma	231					cell cycle|mitotic cell cycle checkpoint	nucleus	protein binding		PRCC/TFE3(25)	kidney(25)|central_nervous_system(2)	27	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CTCTCTTGCCCCTGTTGTGGG	0.587000			T	TFE3	papillary renal 								32	49					0	0	0.000491102	0	0
CD1B	910	broad.mit.edu	37	1	158298032	158298032	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:158298032G>A	uc001frx.2	-	6	1104	c.996C>T	c.(994-996)ATC>ATT	p.I332I	CD1B_uc001frw.2_Silent_p.I170I	NM_001764	NP_001755	P29016	CD1B_HUMAN	CD1B antigen precursor	332	Cytoplasmic (Potential).|Internalization signal.				antigen processing and presentation|immune response	endosome membrane|integral to membrane|lysosomal membrane|plasma membrane	protein binding			ovary(2)	2	all_hematologic(112;0.0378)					TGGCTCATGGGATATTCTGAT	0.279000													8	86					0	0	0.000274275	0	0
LY9	4063	broad.mit.edu	37	1	160788070	160788070	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:160788070G>T	uc001fwu.2	+	6	1455	c.1405G>T	c.(1405-1407)GGG>TGG	p.G469W	LY9_uc001fwv.2_Missense_Mutation_p.G469W|LY9_uc001fww.2_Missense_Mutation_p.G379W|LY9_uc001fwx.2_Missense_Mutation_p.G379W|LY9_uc001fwy.1_Missense_Mutation_p.G281W|LY9_uc001fwz.2_Missense_Mutation_p.G121W	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	469	Helical; (Potential).				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			TCTGTGCGTTGGGATCTTCAG	0.473000													7	115					0.000673444	0.00843851	0.000673444	1	0
FCRLA	84824	broad.mit.edu	37	1	161681011	161681012	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:161681011_161681012CC>TT	uc001gbe.2	+	4	557_558	c.315_316CC>TT	c.(313-318)CTCCAA>CTTTAA	p.Q106*	FCRLA_uc001gbd.2_Nonsense_Mutation_p.Q100*|FCRLA_uc001gbf.2_Intron|FCRLA_uc001gbg.2_Intron|FCRLA_uc009wuo.2_Intron|FCRLA_uc009wup.2_Intron|FCRLA_uc009wuq.2_Intron	NM_032738	NP_116127	Q7L513	FCRLA_HUMAN	Fc receptor-like and mucin-like 1	83	Ig-like C2-type 1.				cell differentiation	cytoplasm|extracellular region					0	all_cancers(52;2.55e-15)|all_hematologic(112;0.0359)		BRCA - Breast invasive adenocarcinoma(70;0.00301)			GGCTGATCCTCCAAGGTCCAGC	0.589000													29	2					0	0	6.4e-05	0	0
ILDR2	387597	broad.mit.edu	37	1	166904624	166904624	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:166904624C>A	uc001gdx.1	-	6	850	c.794G>T	c.(793-795)GGA>GTA	p.G265V		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	265	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						GGGGGCTCCTCCCAAAGGGAC	0.597000													7	85					0.000442599	0.00559229	0.000442599	1	0
RC3H1	149041	broad.mit.edu	37	1	173930261	173930261	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:173930261G>A	uc001gju.3	-	12	2411	c.2324C>T	c.(2323-2325)CCT>CTT	p.P775L	RC3H1_uc010pms.1_Missense_Mutation_p.P775L|RC3H1_uc001gjv.2_Missense_Mutation_p.P775L|RC3H1_uc010pmt.1_Missense_Mutation_p.P775L	NM_172071	NP_742068	Q5TC82	RC3H1_HUMAN	roquin	775	Pro-rich.				cytoplasmic mRNA processing body assembly|negative regulation of activated T cell proliferation|negative regulation of B cell proliferation|negative regulation of germinal center formation|negative regulation of T-helper cell differentiation|nuclear-transcribed mRNA catabolic process|regulation of mRNA stability|regulation of T cell receptor signaling pathway	cytoplasmic mRNA processing body|stress granule	mRNA 3'-UTR binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						AGGTGCAAAAGGAGGTGGAGA	0.413000													100	12					0	0	0.000781405	0	0
ABL2	27	broad.mit.edu	37	1	179079463	179079463	+	Silent	SNP	T	C	C			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:179079463T>C	uc001gmj.3	-	11	2066	c.1779A>G	c.(1777-1779)GAA>GAG	p.E593E	ABL2_uc010pnf.1_Silent_p.E593E|ABL2_uc010png.1_Silent_p.E572E|ABL2_uc010pnh.1_Silent_p.E572E|ABL2_uc001gmg.3_Silent_p.E578E|ABL2_uc001gmi.3_Silent_p.E578E|ABL2_uc001gmh.3_Silent_p.E557E|ABL2_uc010pne.1_Silent_p.E557E	NM_007314	NP_009298	P42684	ABL2_HUMAN	arg tyrosine kinase isoform b	593					axon guidance|cell adhesion|peptidyl-tyrosine phosphorylation|positive regulation of oxidoreductase activity|signal transduction	cytoskeleton|cytosol	ATP binding|magnesium ion binding|manganese ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(8)|breast(3)|ovary(2)|central_nervous_system(1)	14					Adenosine triphosphate(DB00171)|Dasatinib(DB01254)	CTTGTGCCCCTTCAATGTTCT	0.468000			T	ETV6	AML								4	456					0	0	0.000602214	0	0
KCNT2	343450	broad.mit.edu	37	1	196392194	196392194	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:196392194C>T	uc001gtd.1	-	12	1231	c.1171G>A	c.(1171-1173)GAT>AAT	p.D391N	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.D391N|KCNT2_uc001gtf.1_Missense_Mutation_p.D391N|KCNT2_uc001gtg.1_Intron|KCNT2_uc009wyu.2_Missense_Mutation_p.D391N|KCNT2_uc009wyv.1_Missense_Mutation_p.D366N	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	391	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						GATGTCCTATCCACTTCACAA	0.328000													7	3					0	0	0.000157383	0	0
KIF21B	23046	broad.mit.edu	37	1	200973950	200973950	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:200973950G>A	uc001gvs.1	-	6	1161	c.844C>T	c.(844-846)CGG>TGG	p.R282W	KIF21B_uc001gvr.1_Missense_Mutation_p.R282W|KIF21B_uc009wzl.1_Missense_Mutation_p.R282W|KIF21B_uc010ppn.1_Missense_Mutation_p.R282W|KIF21B_uc001gvt.1_Missense_Mutation_p.R65W	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	282	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						GCCCCTGTCCGCTTCAGCCGC	0.602000													30	26					0	0	0.000279167	0	0
SYT2	127833	broad.mit.edu	37	1	202571173	202571173	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:202571173C>T	uc001gye.2	-	6	839	c.646G>A	c.(646-648)GAG>AAG	p.E216K	SYT2_uc010pqb.1_Missense_Mutation_p.E216K|SYT2_uc009xaf.2_Missense_Mutation_p.E46K	NM_001136504	NP_001129976	Q8N9I0	SYT2_HUMAN	synaptotagmin II	216	Phospholipid binding (By similarity).|C2 1.|Cytoplasmic (Potential).				neurotransmitter secretion	cell junction|chromaffin granule membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	protein binding|transporter activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.169)		Botulinum Toxin Type B(DB00042)	CCCCCAAGCTCCTGGTATGGC	0.567000													30	46					0	0	0.000279167	0	0
LAMB3	3914	broad.mit.edu	37	1	209796403	209796403	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:209796403C>A	uc001hhg.2	-	16	2870	c.2480G>T	c.(2479-2481)GGG>GTG	p.G827V	LAMB3_uc009xco.2_Missense_Mutation_p.G827V|LAMB3_uc001hhh.2_Missense_Mutation_p.G827V|LAMB3_uc010psl.1_RNA	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	827	Domain I.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		CAAGAAGGCCCCACCGGCCCT	0.652000													7	80					0.000274275	0.00351444	0.000274275	1	0
USH2A	7399	broad.mit.edu	37	1	215901637	215901637	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:215901637G>A	uc001hku.1	-	61	12188	c.11801C>T	c.(11800-11802)CCT>CTT	p.P3934L		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3934	Fibronectin type-III 24.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GAGTGTGAAAGGCCTCAGGGT	0.478000										HNSCC(13;0.011)			79	7					0	0	0.000781405	0	0
PRSS38	339501	broad.mit.edu	37	1	228003816	228003816	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:228003816G>A	uc001hrh.2	+	2	174	c.174G>A	c.(172-174)GGG>GGA	p.G58G		NM_183062	NP_898885	A1L453	PRS38_HUMAN	marapsin 2 precursor	58					proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)|pancreas(1)	2						GCATGGAGGGGAAAATCCTGG	0.577000													77	7					0	0	0.000781405	0	0
LYST	1130	broad.mit.edu	37	1	235969220	235969220	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:235969220G>A	uc001hxj.2	-	6	3391	c.3216C>T	c.(3214-3216)TCC>TCT	p.S1072S	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Silent_p.S1072S	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	1072					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			CCACATTTATGGAAGAAATAT	0.383000									Chediak-Higashi_syndrome				87	5					0	0	0.000781405	0	0
OR11L1	391189	broad.mit.edu	37	1	248004278	248004278	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:248004278C>T	uc001idn.1	-	1	921	c.921G>A	c.(919-921)AGG>AGA	p.R307R		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			TACCACATTTCCTTCTCATGA	0.383000													55	104					0	0	0.000781405	0	0
OR14C36	127066	broad.mit.edu	37	1	248512755	248512755	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:248512755C>T	uc010pzl.1	+	1	679	c.679C>T	c.(679-681)CCA>TCA	p.P227S		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	227	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GCTCGGGTTTCCAAGAGGAGC	0.507000													55	5					0	0	0.000781405	0	0
LARP4B	23185	broad.mit.edu	37	10	931637	931638	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr10:931637_931638CC>TT	uc001ifs.1	-	1	65_66	c.24_25GG>AA	c.(22-27)AAGGTT>AAAATT	p.V9I		NM_015155	NP_055970	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B	9							nucleotide binding|RNA binding			ovary(2)|central_nervous_system(1)	3						TCAGCCACAACCTTAGCGTCCT	0.515000													22	31					0	0	6.4e-05	0	0
ADARB2	105	broad.mit.edu	37	10	1279705	1279705	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr10:1279705G>A	uc009xhq.2	-	6	1818	c.1444C>T	c.(1444-1446)CAT>TAT	p.H482Y		NM_018702	NP_061172	Q9NS39	RED2_HUMAN	adenosine deaminase, RNA-specific, B2	482	A to I editase.				mRNA processing	mitochondrion|nucleus	adenosine deaminase activity|double-stranded RNA binding|metal ion binding|single-stranded RNA binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(10;0.059)|Colorectal(49;0.0815)		all cancers(11;0.0224)|GBM - Glioblastoma multiforme(2;0.0414)|Epithelial(11;0.165)		ACGTAGAGATGGAAGAGGATG	0.547000													33	39					0	0	0.000339439	0	0
SPAG6	9576	broad.mit.edu	37	10	22678237	22678237	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr10:22678237C>T	uc001iri.2	+	7	1143	c.1001C>T	c.(1000-1002)TCT>TTT	p.S334F	SPAG6_uc001irj.2_Missense_Mutation_p.S334F|SPAG6_uc010qct.1_Missense_Mutation_p.S304F|SPAG6_uc009xkh.2_Missense_Mutation_p.S312F	NM_012443	NP_036575	O75602	SPAG6_HUMAN	sperm associated antigen 6 isoform 1	334	ARM 7.				cell projection organization|spermatid development	axoneme|cilium|cytoplasm|flagellum|microtubule	binding			breast(1)	1						GTCATCATTTCTAAGGTTTGT	0.418000													8	8					0	0	0.000442599	0	0
NRP1	8829	broad.mit.edu	37	10	33515208	33515209	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr10:33515208_33515209CC>TT	uc001iwx.3	-	7	1513_1514	c.990_991GG>AA	c.(988-993)TTGGGC>TTAAGC	p.G331S	NRP1_uc001iwv.3_Missense_Mutation_p.G331S|NRP1_uc009xlz.2_Missense_Mutation_p.G331S|NRP1_uc001iww.3_Missense_Mutation_p.G150S|NRP1_uc001iwy.3_Missense_Mutation_p.G331S|NRP1_uc001iwz.2_Missense_Mutation_p.G331S|NRP1_uc001ixa.2_Missense_Mutation_p.G331S|NRP1_uc001ixb.1_Missense_Mutation_p.G331S|NRP1_uc001ixc.1_Missense_Mutation_p.G331S	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	331	F5/8 type C 1.|Extracellular (Potential).				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	CGCAGAAGGCCCAAGTCTACCT	0.495000													9	23					0	0	6.4e-05	0	0
FZD8	8325	broad.mit.edu	37	10	35928727	35928727	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr10:35928727G>A	uc001iyz.1	-	1	1636	c.1631C>T	c.(1630-1632)GCC>GTC	p.A544V		NM_031866	NP_114072	Q9H461	FZD8_HUMAN	frizzled 8 precursor	544	Helical; Name=6; (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|embryo development|gonad development|T cell differentiation in thymus|vasculature development	cell projection|Golgi apparatus|integral to membrane|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding				0						CACCACCGCGGCGGGCACGGT	0.677000													4	5					0	0	0.000602214	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37422873	37422873	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr10:37422873G>A	uc001iza.1	+	5	578	c.479G>A	c.(478-480)GGA>GAA	p.G160E		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	216	ANK 5.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						GTATGTCATGGATCATCAGAG	0.378000													47	69					0	0	0.000781405	0	0
ZNF33A	7581	broad.mit.edu	37	10	38344791	38344791	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr10:38344791C>T	uc001izh.2	+	5	1914	c.1736C>T	c.(1735-1737)CCC>CTC	p.P579L	ZNF33A_uc001izg.2_Missense_Mutation_p.P580L|ZNF33A_uc010qev.1_Missense_Mutation_p.P586L|ZNF33A_uc001izi.1_Intron	NM_006974	NP_008905	Q06730	ZN33A_HUMAN	zinc finger protein 33A isoform b	579						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(1)	3						GGGGAGAAACCCTACGAATGT	0.388000													17	25					0	0	0.000566183	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	Missense_Mutation	SNP	A	G	G	rs2257765		TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr10:38654432A>G	uc010qex.1	+	5	599	c.524A>G	c.(523-525)AAT>AGT	p.N175S	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Missense_Mutation_p.N173S					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						TCATCTCGCAATGCAAGGAAA	0.453000													5	33					0	0	0.000602214	0	0
A1CF	29974	broad.mit.edu	37	10	52619645	52619645	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr10:52619645G>A	uc001jjj.2	-	3	244	c.56C>T	c.(55-57)GCC>GTC	p.A19V	A1CF_uc010qhn.1_5'UTR|A1CF_uc001jji.2_Missense_Mutation_p.A19V|A1CF_uc001jjh.2_5'UTR|A1CF_uc010qho.1_5'UTR|A1CF_uc009xov.2_Missense_Mutation_p.A19V|A1CF_uc001jjk.1_Missense_Mutation_p.A19V	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	19					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						TGCGCGGAGGGCTGCTTCCTT	0.483000													10	11					0	0	0.00010058	0	0
PCDH15	65217	broad.mit.edu	37	10	55568979	55568979	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr10:55568979C>T	uc010qhs.1	-	37	5241	c.4846G>A	c.(4846-4848)GAA>AAA	p.E1616K	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qht.1_Missense_Mutation_p.E1609K|PCDH15_uc010qhu.1_3'UTR	NM_001142769	NP_001136241	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GACTCTTCTTCACTGTATTCA	0.453000										HNSCC(58;0.16)			12	22					0	0	0.000151284	0	0
SIRT1	23411	broad.mit.edu	37	10	69669084	69669084	+	Silent	SNP	T	C	C			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr10:69669084T>C	uc001jnd.2	+	7	1295	c.1242T>C	c.(1240-1242)TTT>TTC	p.F414F	SIRT1_uc010qis.1_Silent_p.F119F|SIRT1_uc009xpp.2_Silent_p.F222F|SIRT1_uc001jne.2_Silent_p.F111F	NM_012238	NP_036370	Q96EB6	SIRT1_HUMAN	sirtuin 1 isoform a	414	Deacetylase sirtuin-type.				apoptosis|cell aging|cellular response to hydrogen peroxide|cellular response to starvation|chromatin silencing at rDNA|DNA repair|DNA replication|establishment of chromatin silencing|histone H3 deacetylation|interspecies interaction between organisms|maintenance of chromatin silencing|muscle organ development|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of fat cell differentiation|negative regulation of helicase activity|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|peptidyl-lysine acetylation|peptidyl-lysine deacetylation|positive regulation of anti-apoptosis|positive regulation of chromatin silencing|positive regulation of DNA repair|regulation of apoptosis|regulation of cell proliferation|regulation of endodeoxyribonuclease activity|regulation of protein import into nucleus, translocation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|rRNA processing|transcription, DNA-dependent|triglyceride mobilization|white fat cell differentiation	chromatin silencing complex|cytoplasm|nuclear euchromatin|nuclear heterochromatin|nuclear inner membrane|nucleolus|PML body|rDNA heterochromatin	bHLH transcription factor binding|histone binding|HLH domain binding|identical protein binding|mitogen-activated protein kinase binding|NAD+ binding|NAD-dependent histone deacetylase activity (H3-K9 specific)|p53 binding|protein C-terminus binding|transcription corepressor activity|zinc ion binding				0						TTGTGTTTTTTGGTGAAAATT	0.408000													24	32					0	0	0.00047179	0	0
DNAJB12	54788	broad.mit.edu	37	10	74104769	74104769	+	Missense_Mutation	SNP	C	A	A	rs141686379	by1000genomes	TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr10:74104769C>A	uc010qjv.1	-	2	502	c.352G>T	c.(352-354)GGT>TGT	p.G118C	DNAJB12_uc001jsz.2_Missense_Mutation_p.G118C|DNAJB12_uc001jta.2_Missense_Mutation_p.G118C	NM_017626	NP_060096	Q9NXW2	DJB12_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 12	84					protein folding	endoplasmic reticulum|integral to membrane	heat shock protein binding|unfolded protein binding				0						CCAGCTTCACCGTTGGCCGAG	0.612000													8	144					0.000442599	0.00559229	0.000442599	1	0
C10orf11	83938	broad.mit.edu	37	10	77795790	77795790	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr10:77795790C>T	uc001jxi.2	+	2	287	c.72C>T	c.(70-72)TTC>TTT	p.F24F		NM_032024	NP_114413	Q9H2I8	CJ011_HUMAN	chromosome 10 open reading frame 11	24											0	Prostate(51;0.0095)|all_epithelial(25;0.0221)					TGAGCGCATTCAGGAGCCTGG	0.483000											OREG0020279	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	42					0	0	0.00058488	0	0
SH2D4B	387694	broad.mit.edu	37	10	82331187	82331187	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr10:82331187G>A	uc001kck.1	+	3	778	c.348G>A	c.(346-348)TGG>TGA	p.W116*	SH2D4B_uc001kcl.1_Nonsense_Mutation_p.W67*	NM_207372	NP_997255	Q5SQS7	SH24B_HUMAN	SH2 domain containing 4B isoform 1	115	Glu-rich.										0			Colorectal(32;0.229)			CTCTTGGTAGGAGACAGAAGG	0.463000													15	27					0	0	0.000308642	0	0
LDB3	11155	broad.mit.edu	37	10	88439896	88439896	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr10:88439896G>A	uc001kdv.2	+	3	326	c.303G>A	c.(301-303)CCG>CCA	p.P101P	LDB3_uc010qml.1_Silent_p.P101P|LDB3_uc010qmm.1_Silent_p.P101P|LDB3_uc001kdu.2_Silent_p.P101P|LDB3_uc009xsz.2_5'UTR|LDB3_uc001kdr.2_Silent_p.P101P|LDB3_uc009xsy.2_Silent_p.P101P|LDB3_uc001kds.2_Silent_p.P101P|LDB3_uc001kdt.2_RNA	NM_007078	NP_009009	O75112	LDB3_HUMAN	LIM domain binding 3 isoform 1	101						cytoskeleton|perinuclear region of cytoplasm|pseudopodium	zinc ion binding			ovary(1)	1						CCCCTCTGCCGGTGATCCCTC	0.612000													14	21					0	0	0.000308642	0	0
PLCE1	51196	broad.mit.edu	37	10	96066325	96066325	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr10:96066325G>C	uc001kjk.2	+	26	6398	c.5764G>C	c.(5764-5766)GAG>CAG	p.E1922Q	PLCE1_uc010qnx.1_Missense_Mutation_p.E1906Q|PLCE1_uc001kjm.2_Missense_Mutation_p.E1614Q|PLCE1_uc001kjp.2_Missense_Mutation_p.E280Q	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	1922	C2.				activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				CATGTGGAACGAGCAGTTTCT	0.493000													3	87					0	0	6.4e-05	0	0
EXOSC1	51013	broad.mit.edu	37	10	99197027	99197027	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr10:99197027G>A	uc001kni.2	-	7	428	c.402C>T	c.(400-402)TCC>TCT	p.S134S	EXOSC1_uc009xvp.1_RNA	NM_016046	NP_057130	Q9Y3B2	EXOS1_HUMAN	exosomal core protein CSL4	134	S1 motif.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA processing	cytosol|exosome (RNase complex)|nucleolus	protein binding|RNA binding				0		Renal(717;0.000147)|Colorectal(252;0.00205)|Ovarian(717;0.00965)		all cancers(201;8.29e-42)|Epithelial(162;5.7e-33)|BRCA - Breast invasive adenocarcinoma(275;0.000315)|Kidney(138;0.000832)|KIRC - Kidney renal clear cell carcinoma(50;0.00269)|STAD - Stomach adenocarcinoma(243;0.202)		CATCACCTAAGGAGATCTAGT	0.458000													34	39					0	0	0.000491102	0	0
TDRD1	56165	broad.mit.edu	37	10	115963932	115963932	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr10:115963932G>A	uc001lbg.1	+	9	1235	c.1082G>A	c.(1081-1083)AGA>AAA	p.R361K	TDRD1_uc001lbf.2_Missense_Mutation_p.R352K|TDRD1_uc001lbh.1_Missense_Mutation_p.R352K|TDRD1_uc001lbi.1_Missense_Mutation_p.R352K|TDRD1_uc010qsc.1_Intron|TDRD1_uc001lbj.2_Missense_Mutation_p.R70K	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	361	Tudor 1.				DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		CCATTAAACAGAATTTACCAC	0.353000													16	14					0	0	0.000308642	0	0
LOC653544	653544	broad.mit.edu	37	10	135491107	135491107	+	Missense_Mutation	SNP	G	A	A	rs138808999	by1000genomes	TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr10:135491107G>A	uc010qvi.1	+	1	829	c.718G>A	c.(718-720)GCC>ACC	p.A240T		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	240						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CTCGTGGGTCGCCTTCGCCCA	0.771000													6	31					0	0	8.12818e-05	0	0
OR52J3	119679	broad.mit.edu	37	11	5068212	5068212	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr11:5068212C>T	uc010qyv.1	+	1	457	c.457C>T	c.(457-459)CGT>TGT	p.R153C		NM_001001916	NP_001001916	Q8NH60	O52J3_HUMAN	olfactory receptor, family 52, subfamily J,	153	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|lung(1)|skin(1)	3		Medulloblastoma(188;0.00131)|all_neural(188;0.0189)|Breast(177;0.0204)		Epithelial(150;9.29e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.19)		CATTGTAATTCGTCCCGTTTT	0.468000													14	2					0	0	0.000219431	0	0
HBBP1	3044	broad.mit.edu	37	11	5264435	5264435	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr11:5264435G>A	uc001mag.2	-	2	267	c.51C>T	c.(49-51)TTC>TTT	p.F17F		NR_001589				Homo sapiens hemoglobin, beta pseudogene 1 (HBBP1), non-coding RNA.												0						CAGCTTTTCCGAAGGAGATCA	0.498000													22	2					0	0	0.00047179	0	0
OR52E4	390081	broad.mit.edu	37	11	5905551	5905551	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr11:5905551A>C	uc010qzs.1	+	1	29	c.29A>C	c.(28-30)TAT>TCT	p.Y10S	TRIM5_uc001mbq.1_Intron	NM_001005165	NP_001005165	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E,	10	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACCCACTTCTATCCCCCCTTC	0.443000													36	3					0	0	0.000509022	0	0
DCHS1	8642	broad.mit.edu	37	11	6643302	6643302	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr11:6643302G>A	uc001mem.1	-	21	10015	c.9605C>T	c.(9604-9606)CCA>CTA	p.P3202L	TPP1_uc001mek.1_5'Flank|TPP1_uc001mel.1_5'Flank|TPP1_uc010rar.1_5'Flank	NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	3202	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GATGAGGGGTGGTGGGTCGAT	0.632000													4	18					0	0	0.00024832	0	0
OR10A3	26496	broad.mit.edu	37	11	7960755	7960755	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr11:7960755G>A	uc010rbi.1	-	1	313	c.313C>T	c.(313-315)CTT>TTT	p.L105F		NM_001003745	NP_001003745	P58181	O10A3_HUMAN	olfactory receptor, family 10, subfamily A,	105	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CCAAAAAGAAGGATGAAATAC	0.438000													35	5					0	0	0.000692331	0	0
WEE1	7465	broad.mit.edu	37	11	9597474	9597474	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr11:9597474G>T	uc001mhs.2	+	2	869	c.616G>T	c.(616-618)GTT>TTT	p.V206F	WEE1_uc001mht.2_5'UTR|WEE1_uc001mhu.2_5'UTR	NM_003390	NP_003381	P30291	WEE1_HUMAN	WEE1 tyrosine kinase isoform 1	206					blood coagulation|cell cycle checkpoint|cell division|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mitosis|S phase of mitotic cell cycle	nucleoplasm	ATP binding|magnesium ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding|protein serine/threonine kinase activity			central_nervous_system(2)|ovary(1)|breast(1)|skin(1)	5				all cancers(16;4.59e-09)|Epithelial(150;3.15e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0484)		TTCCAGCTCTGTTAAACTCCG	0.393000													37	8					1.15505e-17	1.53196e-16	0.000437636	1	0
MICAL2	9645	broad.mit.edu	37	11	12265580	12265580	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr11:12265580C>T	uc001mjz.2	+	21	2993	c.2705C>T	c.(2704-2706)CCT>CTT	p.P902L	MICAL2_uc010rch.1_Intron|MICAL2_uc001mka.2_Missense_Mutation_p.P902L|MICAL2_uc010rci.1_Missense_Mutation_p.P902L|MICAL2_uc001mkb.2_Intron|MICAL2_uc001mkc.2_Intron|MICAL2_uc001mkd.2_Intron|MICAL2_uc010rcj.1_Intron|MICAL2_uc001mkf.2_RNA	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	902						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		CCTCCATCTCCTCCCTCTCGC	0.468000													144	24					0	0	0.000781405	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18956224	18956224	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr11:18956224G>A	uc001mpg.2	-	1	326	c.108C>T	c.(106-108)ATC>ATT	p.I36I		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	36	Helical; Name=1; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						CAAGGGAAACGATGCACGTCA	0.557000													92	93					0	0	0.000781405	0	0
ABTB2	25841	broad.mit.edu	37	11	34184209	34184209	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr11:34184209C>T	uc001mvl.1	-	10	1804	c.1574G>A	c.(1573-1575)CGG>CAG	p.R525Q		NM_145804	NP_665803	Q8N961	ABTB2_HUMAN	ankyrin repeat and BTB (POZ) domain containing	525							DNA binding			central_nervous_system(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0508)|all_hematologic(20;0.0691)				GGTGCGGGTCCGGCTCAGCCG	0.672000													13	19					0	0	0.00010058	0	0
RAG1	5896	broad.mit.edu	37	11	36595128	36595128	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr11:36595128C>T	uc001mwu.3	+	2	398	c.274C>T	c.(274-276)CAC>TAC	p.H92Y	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	92	Interaction with importin alpha-1.				histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				AAAGAAATTTCACGACAACGA	0.483000									Familial_Hemophagocytic_Lymphohistiocytosis				94	9					0	0	0.000781405	0	0
PRDM11	56981	broad.mit.edu	37	11	45246334	45246334	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr11:45246334C>T	uc001myo.2	+	8	1660	c.1411C>T	c.(1411-1413)CCT>TCT	p.P471S		NM_020229	NP_064614	Q9NQV5	PRD11_HUMAN	PR domain containing 11	471										upper_aerodigestive_tract(1)	1						TGGGAAACTTCCTGAGCCCCC	0.512000													75	11					0	0	0.000781405	0	0
F2	2147	broad.mit.edu	37	11	46748278	46748278	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr11:46748278C>T	uc001ndf.3	+	9	1064	c.1021C>T	c.(1021-1023)CTG>TTG	p.L341L	F2_uc001ndg.3_RNA	NM_000506	NP_000497	P00734	THRB_HUMAN	coagulation factor II preproprotein	341					activation of caspase activity|acute-phase response|blood coagulation, intrinsic pathway|cell surface receptor linked signaling pathway|cytosolic calcium ion homeostasis|fibrinolysis|leukocyte migration|negative regulation of astrocyte differentiation|negative regulation of fibrinolysis|negative regulation of platelet activation|negative regulation of proteolysis|peptidyl-glutamic acid carboxylation|platelet activation|positive regulation of collagen biosynthetic process|positive regulation of protein phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of release of sequestered calcium ion into cytosol|post-translational protein modification|proteolysis|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	cytosol|endoplasmic reticulum lumen|extracellular space|Golgi lumen|plasma membrane|soluble fraction	calcium ion binding|growth factor activity|serine-type endopeptidase activity|thrombospondin receptor activity			ovary(3)	3		all_lung(304;0.000414)|Lung NSC(402;0.0011)		BRCA - Breast invasive adenocarcinoma(625;0.146)	Antihemophilic Factor(DB00025)|Argatroban(DB00278)|Bivalirudin(DB00006)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)|Enoxaparin(DB01225)|Heparin(DB01109)|Lepirudin(DB00001)|Menadione(DB00170)|Proflavine(DB01123)|Simvastatin(DB00641)|Suramin(DB04786)|Warfarin(DB00682)|Ximelagatran(DB04898)	GCTGCGACCTCTGTTCGAGAA	0.612000													29	5					0	0	0.000184323	0	0
OR5J2	282775	broad.mit.edu	37	11	55944282	55944282	+	Silent	SNP	C	G	G			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr11:55944282C>G	uc010rjb.1	+	1	189	c.189C>G	c.(187-189)CTC>CTG	p.L63L		NM_001005492	NP_001005492	Q8NH18	OR5J2_HUMAN	olfactory receptor, family 5, subfamily J,	63	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|large_intestine(1)|breast(1)|pancreas(1)	4	Esophageal squamous(21;0.00693)					ACTTTTTACTCAGCTGTCTTT	0.438000													3	85					0	0	0.00024832	0	0
OR5AR1	219493	broad.mit.edu	37	11	56431231	56431231	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr11:56431231G>A	uc010rjm.1	+	1	70	c.70G>A	c.(70-72)GAG>AAG	p.E24K		NM_001004730	NP_001004730	Q8NGP9	O5AR1_HUMAN	olfactory receptor, family 5, subfamily AR,	24	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCCTCAGATGGAGATCATCTT	0.423000													51	10					0	0	0.000781405	0	0
GLYAT	10249	broad.mit.edu	37	11	58477615	58477615	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr11:58477615G>A	uc001nnb.2	-	6	670	c.515C>T	c.(514-516)TCC>TTC	p.S172F	GLYAT_uc001nnc.2_3'UTR	NM_201648	NP_964011	Q6IB77	GLYAT_HUMAN	glycine-N-acyltransferase isoform a	172					acyl-CoA metabolic process|response to toxin|xenobiotic metabolic process	mitochondrial matrix	glycine N-acyltransferase activity|glycine N-benzoyltransferase activity				0		Breast(21;0.0044)|all_epithelial(135;0.0157)			Glycine(DB00145)	AACATCCATGGATGAGAGTTT	0.398000													15	1					0	0	0.000566183	0	0
MPEG1	219972	broad.mit.edu	37	11	58978743	58978743	+	Silent	SNP	A	G	G			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr11:58978743A>G	uc001nnu.3	-	1	1752	c.1596T>C	c.(1594-1596)TTT>TTC	p.F532F		NM_001039396	NP_001034485	Q2M385	MPEG1_HUMAN	macrophage expressed gene 1 precursor	532	Extracellular (Potential).					integral to membrane				ovary(1)|skin(1)	2		all_epithelial(135;0.125)				CTGTGCAGCTAAAGAACCCGC	0.537000													24	6					0	0	0.000586117	0	0
LRP5	4041	broad.mit.edu	37	11	68197081	68197081	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr11:68197081C>T	uc001ont.2	+	17	3751	c.3676C>T	c.(3676-3678)CAC>TAC	p.H1226Y	LRP5_uc009ysg.2_Missense_Mutation_p.H636Y	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	1226	EGF-like 4.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						TGGCTGCTCCCACATCTGTAT	0.577000													43	9					0	0	0.000781405	0	0
FAT3	120114	broad.mit.edu	37	11	92523303	92523303	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr11:92523303G>A	uc001pdj.3	+	7	4547	c.4530G>A	c.(4528-4530)CGG>CGA	p.R1510R		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1510	Cadherin 14.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GAAAATTCCGGATTGACCCTA	0.493000										TCGA Ovarian(4;0.039)			133	26					0	0	0.000781405	0	0
ROBO4	54538	broad.mit.edu	37	11	124766432	124766432	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr11:124766432C>T	uc001qbg.2	-	3	675	c.535G>A	c.(535-537)GCC>ACC	p.A179T	ROBO4_uc010sas.1_Missense_Mutation_p.A34T|ROBO4_uc001qbh.2_Missense_Mutation_p.A69T|ROBO4_uc001qbi.2_5'Flank|ROBO4_uc010sat.1_5'Flank	NM_019055	NP_061928	Q8WZ75	ROBO4_HUMAN	roundabout homolog 4, magic roundabout	179	Ig-like C2-type 2.				angiogenesis|cell differentiation	integral to membrane	receptor activity			ovary(1)|skin(1)	2	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0301)		GGCTGGAGGGCCAGGGGTTTC	0.632000													44	8					0	0	0.000781405	0	0
NCAPD3	23310	broad.mit.edu	37	11	134050977	134050977	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr11:134050977G>A	uc001qhd.1	-	20	3160	c.2554C>T	c.(2554-2556)CTG>TTG	p.L852L	NCAPD3_uc010scm.1_RNA|NCAPD3_uc009zda.1_RNA	NM_015261	NP_056076	P42695	CNDD3_HUMAN	non-SMC condensin II complex, subunit D3	852					cell division|mitotic chromosome condensation	nuclear centromeric heterochromatin|nuclear condensin complex	methylated histone residue binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	5	all_hematologic(175;0.127)	all_cancers(12;1.68e-21)|all_epithelial(12;5.86e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;8.74e-10)|BRCA - Breast invasive adenocarcinoma(10;1e-08)|all cancers(11;1.46e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00345)|Lung(977;0.227)		CTTACCAACAGGTCTTCGTCC	0.458000													27	3					0	0	0.000279167	0	0
KCNJ8	3764	broad.mit.edu	37	12	21918970	21918970	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr12:21918970C>T	uc001rff.2	-	3	1300	c.962G>A	c.(961-963)GGC>GAC	p.G321D		NM_004982	NP_004973	Q15842	IRK8_HUMAN	potassium inwardly-rectifying channel J8	321	Cytoplasmic (By similarity).					voltage-gated potassium channel complex					0					Levosimendan(DB00922)	AAAGCGGTGGCCCCATTGGAT	0.478000													30	33					0	0	0.00058488	0	0
WNT10B	7480	broad.mit.edu	37	12	49361771	49361771	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr12:49361771G>A	uc001rss.2	-	4	1015	c.669C>T	c.(667-669)ATC>ATT	p.I223I	WNT10B_uc001rst.2_Missense_Mutation_p.S176F	NM_003394	NP_003385	O00744	WN10B_HUMAN	wingless-type MMTV integration site family,	223					axis specification|bone trabecula formation|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|chondrocyte differentiation|female gonad development|hemopoietic stem cell proliferation|midbrain-hindbrain boundary development|myoblast cell differentiation involved in skeletal muscle regeneration|negative regulation of epithelial cell proliferation|negative regulation of fat cell differentiation|neuron differentiation|positive regulation of anagen|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cell proliferation|positive regulation of epithelial cell differentiation|positive regulation of osteoblast differentiation|protein stabilization|regulation of skeletal muscle tissue development|skeletal muscle fiber development|smoothened signaling pathway|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			skin(4)|lung(3)	7						TTCGTGCCTGGATGTCCCGGG	0.542000													7	11					0	0	8.12818e-05	0	0
GPD1	2819	broad.mit.edu	37	12	50500638	50500639	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr12:50500638_50500639CC>TT	uc001rvz.2	+	5	583_584	c.550_551CC>TT	c.(550-552)CCA>TTA	p.P184L	GPD1_uc001rwa.2_Missense_Mutation_p.P161L	NM_005276	NP_005267	P21695	GPDA_HUMAN	glycerol-3-phosphate dehydrogenase 1 (soluble)	184					glycerol-3-phosphate catabolic process|triglyceride biosynthetic process	cytosol|glycerol-3-phosphate dehydrogenase complex	glycerol-3-phosphate dehydrogenase|protein homodimerization activity				0					NADH(DB00157)	GATGCAGACACCAAACTTCCGT	0.530000													18	22					0	0	6.4e-05	0	0
KRT72	140807	broad.mit.edu	37	12	52994945	52994945	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr12:52994945G>A	uc001sar.2	-	1	378	c.292C>T	c.(292-294)CCT>TCT	p.P98S	KRT72_uc001saq.2_Missense_Mutation_p.P98S|KRT72_uc010sns.1_Missense_Mutation_p.P98S|KRT72_uc010snt.1_5'UTR	NM_001146225	NP_001139697	Q14CN4	K2C72_HUMAN	keratin 72 isoform 1	98	Head.					keratin filament	structural molecule activity			ovary(5)|pancreas(1)	6				BRCA - Breast invasive adenocarcinoma(357;0.195)		GTGACCTGAGGGATGCCCCCG	0.731000													6	9					0	0	8.12818e-05	0	0
ITGA5	3678	broad.mit.edu	37	12	54793535	54793535	+	Missense_Mutation	SNP	G	T	T	rs142652896		TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr12:54793535G>T	uc001sga.2	-	27	2803	c.2735C>A	c.(2734-2736)CCG>CAG	p.P912Q		NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	912	Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						CTCAGCCTCCGGGCATTTCTA	0.547000											OREG0021897	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	56					0.000602214	0.0075879	0.000602214	1	0
OR6C65	403282	broad.mit.edu	37	12	55795165	55795165	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr12:55795165C>T	uc010spl.1	+	1	853	c.853C>T	c.(853-855)CCC>TCC	p.P285S		NM_001005518	NP_001005518	A6NJZ3	O6C65_HUMAN	olfactory receptor, family 6, subfamily C,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TATGTTGAATCCCTTTATTTA	0.353000													20	19					0	0	0.000295444	0	0
OR6C76	390326	broad.mit.edu	37	12	55820290	55820290	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr12:55820290G>A	uc010spm.1	+	1	253	c.253G>A	c.(253-255)GGG>AGG	p.G85R		NM_001005183	NP_001005183	A6NM76	O6C76_HUMAN	olfactory receptor, family 6, subfamily C,	85	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CATTCTAACAGGGGACAAATC	0.408000													35	36					0	0	0.000228196	0	0
MYO1A	4640	broad.mit.edu	37	12	57422623	57422623	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr12:57422623G>A	uc001smw.3	-	28	3291	c.3048C>T	c.(3046-3048)GTC>GTT	p.V1016V	MYO1A_uc010sqz.1_Silent_p.V854V|MYO1A_uc009zpd.2_Silent_p.V1016V	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	1016					sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						GGCCCTGGACGACCTTGACAG	0.562000													22	27					0	0	0.000295444	0	0
XPOT	11260	broad.mit.edu	37	12	64821849	64821849	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr12:64821849C>T	uc001ssb.2	+	16	2112	c.1686C>T	c.(1684-1686)TTC>TTT	p.F562F		NM_007235	NP_009166	O43592	XPOT_HUMAN	tRNA exportin	562	Necessary for tRNA-binding, cytoplasmic localization and nuclear export.				intracellular protein transport|tRNA export from nucleus	cytoplasm|nucleoplasm	protein transporter activity|tRNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(28;0.0404)		TGAATCCTTTCATTGAGGATA	0.318000													17	25					0	0	0.000958276	0	0
GLIPR1	11010	broad.mit.edu	37	12	75875797	75875797	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr12:75875797G>A	uc001sxs.2	+	2	506	c.358G>A	c.(358-360)GAA>AAA	p.E120K	GLIPR1_uc009zsb.1_Missense_Mutation_p.E120K	NM_006851	NP_006842	P48060	GLIP1_HUMAN	GLI pathogenesis-related 1 precursor	120					cellular lipid metabolic process	extracellular region|integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3						CTGGTATGACGAAATCCAGGA	0.453000													14	45					0	0	0.000219431	0	0
ZDHHC17	23390	broad.mit.edu	37	12	77222236	77222236	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr12:77222236G>A	uc001syk.1	+	10	1270	c.1107G>A	c.(1105-1107)TGG>TGA	p.W369*		NM_015336	NP_056151	Q8IUH5	ZDH17_HUMAN	huntingtin interacting protein 14	369	Helical; (Potential).				lipoprotein transport|positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi-associated vesicle membrane|integral to membrane	magnesium ion transmembrane transporter activity|protein binding|protein-cysteine S-palmitoleyltransferase activity|signal transducer activity|zinc ion binding				0						CCAAATTCTGGATGTATGTGA	0.318000													114	158					0	0	0.000781405	0	0
GALNT4	8693	broad.mit.edu	37	12	89917923	89917924	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr12:89917923_89917924GG>AA	uc001tbd.2	-	1	612_613	c.403_404CC>TT	c.(403-405)CCT>TTT	p.P135F	POC1B_uc001tba.2_Intron|POC1B_uc001tbb.2_Intron|POC1B_uc001tbc.2_Intron|POC1B_uc010sun.1_Intron|GALNT4_uc001tbe.2_Missense_Mutation_p.P132F|GALNT4_uc010suo.1_Intron	NM_003774	NP_003765	Q8N4A0	GALT4_HUMAN	polypeptide N-acetylgalactosaminyltransferase 4	135	Lumenal (Potential).|Catalytic subdomain A.				carbohydrate metabolic process	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0						AGAGGTGGTAGGAAGTGTCCTA	0.406000											OREG0022018	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	29					0	0	6.4e-05	0	0
ANKS1B	56899	broad.mit.edu	37	12	100166721	100166721	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr12:100166721C>T	uc001tge.1	-	8	1524	c.1107G>A	c.(1105-1107)GGG>GGA	p.G369G	ANKS1B_uc001tgf.1_Intron|ANKS1B_uc009ztt.1_Silent_p.G335G	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	369						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		TTCCATTTTTCCCAAGTTCTT	0.408000													28	50					0	0	0.000491102	0	0
STAB2	55576	broad.mit.edu	37	12	104123987	104123987	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr12:104123987C>T	uc001tjw.2	+	49	5362	c.5176C>T	c.(5176-5178)CCC>TCC	p.P1726S	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1726	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						ATTGCTATCTCCCAAAAATTT	0.358000													41	67					0	0	0.000319135	0	0
WSCD2	9671	broad.mit.edu	37	12	108589838	108589838	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr12:108589838C>T	uc001tms.2	+	2	973	c.229C>T	c.(229-231)CGG>TGG	p.R77W	WSCD2_uc001tmt.2_Missense_Mutation_p.R77W	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	77						integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						CAGAGGTTTCCGGGACACAGG	0.617000													62	50					0	0	0.000781405	0	0
SVOP	55530	broad.mit.edu	37	12	109306351	109306351	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr12:109306351C>T	uc010sxh.1	-	15	1779	c.1607G>A	c.(1606-1608)GGT>GAT	p.G536D		NM_018711	NP_061181	Q8N4V2	SVOP_HUMAN	SV2 related protein	536	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	ion transmembrane transporter activity				0						AACACCTGCACCGTGCATTCC	0.627000													47	75					0	0	0.000781405	0	0
UBE3B	89910	broad.mit.edu	37	12	109962272	109962272	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr12:109962272C>T	uc001top.2	+	23	3135	c.2532C>T	c.(2530-2532)GGC>GGT	p.G844G	UBE3B_uc001toq.2_Silent_p.G844G|UBE3B_uc001tos.2_Silent_p.G271G|UBE3B_uc001too.1_RNA|UBE3B_uc009zvj.1_Silent_p.G844G	NM_130466	NP_569733	Q7Z3V4	UBE3B_HUMAN	ubiquitin protein ligase E3B	844	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			ovary(2)|lung(2)	4						CTGACCTGGGCCTGACGCTGT	0.567000													18	29					0	0	0.000375601	0	0
RNF17	56163	broad.mit.edu	37	13	25338397	25338397	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr13:25338397G>A	uc001upr.2	+	1	97	c.56G>A	c.(55-57)GGG>GAG	p.G19E	RNF17_uc010tdd.1_5'UTR|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.G19E|RNF17_uc001ups.2_5'UTR|RNF17_uc001upq.1_Missense_Mutation_p.G19E	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	19					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		CAGCGAATGGGGAGGAAGAGT	0.612000													16	3					0	0	0.000308642	0	0
FLT3	2322	broad.mit.edu	37	13	28608112	28608112	+	Silent	SNP	T	C	C	rs140784892		TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr13:28608112T>C	uc001urw.2	-	15	1936	c.1854A>G	c.(1852-1854)TCA>TCG	p.S618S	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Silent_p.S618S	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	618	Protein kinase.|ATP (By similarity).|Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity	p.G617_S618ins21(1)		haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	CAAAAGCACCTGATCCTAGTA	0.403000			Mis|O		AML|ALL								117	41					0	0	0.000781405	0	0
FAM124A	220108	broad.mit.edu	37	13	51825617	51825617	+	Silent	SNP	T	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr13:51825617T>A	uc001vfg.1	+	3	245	c.114T>A	c.(112-114)GTT>GTA	p.V38V	FAM124A_uc001vfe.2_Silent_p.V38V|FAM124A_uc001vff.1_Silent_p.V74V	NM_145019	NP_659456	Q86V42	F124A_HUMAN	hypothetical protein LOC220108	38										central_nervous_system(1)	1		Acute lymphoblastic leukemia(7;0.000334)|Breast(56;0.00156)|Prostate(109;0.00538)|Lung NSC(96;0.0216)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;4.25e-07)		AGCTTTCCGTTGAAGAGGCGC	0.517000													7	66					0	0	0.000673444	0	0
PCDH8	5100	broad.mit.edu	37	13	53418908	53418909	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr13:53418908_53418909CC>TT	uc001vhi.2	-	3	3202_3203	c.2999_3000GG>AA	c.(2998-3000)AGG>AAA	p.R1000K	PCDH8_uc001vhj.2_Missense_Mutation_p.R903K	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	1000	Cytoplasmic (Potential).				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		AGTAATTGTCCCTGCGCAGAGG	0.579000													5	34					0	0	6.4e-05	0	0
SLITRK5	26050	broad.mit.edu	37	13	88329698	88329698	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr13:88329698C>T	uc001vln.2	+	2	2274	c.2055C>T	c.(2053-2055)TTC>TTT	p.F685F	SLITRK5_uc010tic.1_Silent_p.F444F	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	685	Helical; (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					CCGGGCTCTTCGTGCTGGTCA	0.592000													38	8					0	0	0.000270559	0	0
TFDP1	7027	broad.mit.edu	37	13	114288278	114288278	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr13:114288278C>T	uc001vtw.2	+	7	760	c.548C>T	c.(547-549)TCC>TTC	p.S183F	TFDP1_uc010tkd.1_Missense_Mutation_p.S88F|TFDP1_uc010tke.1_Missense_Mutation_p.S88F|TFDP1_uc001vty.3_Missense_Mutation_p.S183F|TFDP1_uc001vtx.2_Missense_Mutation_p.S63F|TFDP1_uc010agx.2_Missense_Mutation_p.S183F	NM_007111	NP_009042	Q14186	TFDP1_HUMAN	transcription factor Dp-1	183	Potential.|DEF box.				cell proliferation|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|regulation of transcription from RNA polymerase II promoter	transcription factor complex	DNA binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding			lung(4)|ovary(2)|skin(1)	7	Lung NSC(43;0.0113)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.132)|all_epithelial(44;0.0731)|all_lung(25;0.149)|Breast(118;0.153)	all cancers(43;0.0576)			AACATCATCTCCAAGGAGAAG	0.502000										TSP Lung(29;0.18)			9	73					0	0	0.000442599	0	0
OR4K13	390433	broad.mit.edu	37	14	20502103	20502103	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr14:20502103G>A	uc010tkz.1	-	1	815	c.815C>T	c.(814-816)TCT>TTT	p.S272F		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	272	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		GTAAAACACAGAAAGAATTTT	0.363000													18	14					0	0	0.000566183	0	0
FLJ10357	55701	broad.mit.edu	37	14	21543272	21543272	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr14:21543272C>T	uc001vzp.2	+	3	1412	c.1383C>T	c.(1381-1383)GCC>GCT	p.A461A	FLJ10357_uc001vzn.1_Silent_p.A461A|FLJ10357_uc001vzo.1_Intron|FLJ10357_uc010aij.2_RNA|FLJ10357_uc010tln.1_Intron	NM_018071	NP_060541	Q8TER5	ARH40_HUMAN	hypothetical protein LOC55701	461					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;5.79e-11)|Epithelial(56;8.35e-09)|all cancers(55;4.23e-08)	GBM - Glioblastoma multiforme(265;0.0197)		TCTCTGAAGCCTGTGGGCCTA	0.577000													14	24					0	0	0.000219431	0	0
OR5AU1	390445	broad.mit.edu	37	14	21623315	21623315	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr14:21623315G>A	uc010tlp.1	-	1	870	c.870C>T	c.(868-870)TCC>TCT	p.S290S		NM_001004731	NP_001004731	Q8NGC0	O5AU1_HUMAN	olfactory receptor, family 5, subfamily AU,	290	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(95;0.00238)		Epithelial(56;6.88e-07)|all cancers(55;6.02e-06)	GBM - Glioblastoma multiforme(265;0.0192)		ATGCACAGGTGGAAAATGCCT	0.517000													10	16					0	0	0.000442599	0	0
LRRC16B	90668	broad.mit.edu	37	14	24525553	24525553	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr14:24525553C>T	uc001wlj.2	+	11	973	c.816C>T	c.(814-816)AGC>AGT	p.S272S		NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	272										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		AGAACGGGAGCTGTGTGCTGC	0.617000													5	11					0	0	8.12818e-05	0	0
C14orf101	54916	broad.mit.edu	37	14	57075923	57075923	+	Missense_Mutation	SNP	C	G	G	rs140983222		TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr14:57075923C>G	uc001xcm.2	+	6	858	c.736C>G	c.(736-738)CGG>GGG	p.R246G	C14orf101_uc001xcj.2_RNA|C14orf101_uc001xck.2_Missense_Mutation_p.R246G|C14orf101_uc010aot.1_Missense_Mutation_p.R246G|C14orf101_uc001xcl.1_RNA|C14orf101_uc001xcn.2_RNA|C14orf101_uc010trf.1_5'UTR	NM_017799	NP_060269	Q9NX78	CN101_HUMAN	hypothetical protein LOC54916	246						integral to membrane				breast(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(311;0.226)		TAATCACGCCCGGTGGACCTG	0.483000													4	167					0	0	0.000602214	0	0
HSPA2	3306	broad.mit.edu	37	14	65008605	65008605	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr14:65008605C>T	uc001xhj.2	+	2	1114	c.1038C>T	c.(1036-1038)ATC>ATT	p.I346I	HSPA2_uc001xhk.3_Silent_p.I346I	NM_021979	NP_068814	P54652	HSP72_HUMAN	heat shock 70kDa protein 2	346					response to unfolded protein|spermatid development	cell surface	ATP binding|unfolded protein binding			skin(1)	1				all cancers(60;0.00515)|OV - Ovarian serous cystadenocarcinoma(108;0.00584)|BRCA - Breast invasive adenocarcinoma(234;0.045)		CCACTCGTATCCCCAAGATCC	0.642000													19	21					0	0	0.000958276	0	0
LTBP2	4053	broad.mit.edu	37	14	75016658	75016658	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr14:75016658G>A	uc001xqa.2	-	8	2084	c.1697C>T	c.(1696-1698)CCT>CTT	p.P566L		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	566	TB 1.				protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		CTCCAGCAGAGGGTTGGCACA	0.627000													8	15					0	0	0.000442599	0	0
ZC3H14	79882	broad.mit.edu	37	14	89068387	89068387	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr14:89068387G>A	uc001xww.2	+	11	1699	c.1474G>A	c.(1474-1476)GAT>AAT	p.D492N	ZC3H14_uc010twd.1_Missense_Mutation_p.D492N|ZC3H14_uc010twe.1_Missense_Mutation_p.D492N|ZC3H14_uc001xwx.2_Intron|ZC3H14_uc010twf.1_Intron|ZC3H14_uc001xwy.2_Intron|ZC3H14_uc010twg.1_Intron|ZC3H14_uc001xxa.2_Missense_Mutation_p.D37N|ZC3H14_uc001xxc.2_Intron|ZC3H14_uc001xxb.2_Intron	NM_024824	NP_079100	Q6PJT7	ZC3HE_HUMAN	zinc finger CCCH-type containing 14 isoform 1	492						cytoplasm|cytoplasm|nuclear speck	protein binding|RNA binding|zinc ion binding			ovary(2)|skin(1)	3						GAAGACTGCAGATTCCCTTCG	0.428000													19	121					0	0	0.000375601	0	0
C14orf102	55051	broad.mit.edu	37	14	90770317	90770317	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr14:90770317G>A	uc001xyi.1	-	5	998	c.967C>T	c.(967-969)CGG>TGG	p.R323W	C14orf102_uc010atp.1_5'UTR|C14orf102_uc001xyj.1_Missense_Mutation_p.R92W	NM_017970	NP_060440	Q9H7Z3	CN102_HUMAN	hypothetical protein LOC55051 isoform 1	323	HAT 1.|Potential.						protein binding			ovary(2)|lung(1)	3		all_cancers(154;0.118)		COAD - Colon adenocarcinoma(157;0.218)		TGCGTATCCCGAGGATTCTCC	0.517000													40	29					0	0	0.000374591	0	0
ADAM6	8755	broad.mit.edu	37	14	106877770	106877770	+	RNA	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr14:106877770C>T	uc010tyt.1	-	277		c.11329G>A			uc010tyu.1_Nonsense_Mutation_p.W61*					Parts of antibodies, mostly variable regions.												0						ACTCCCAATCCACTCCAGCCC	0.562000													17	41					0	0	0.000422831	0	0
MTMR15	22909	broad.mit.edu	37	15	31218059	31218059	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr15:31218059G>C	uc001zff.2	+	10	2696	c.2405G>C	c.(2404-2406)GGG>GCG	p.G802A	MTMR15_uc001zfe.2_Missense_Mutation_p.G407A	NM_014967	NP_055782	Q9Y2M0	FAN1_HUMAN	myotubularin related protein 15 isoform a	802					double-strand break repair via homologous recombination|nucleotide-excision repair, DNA incision	nucleus	5'-3' exonuclease activity|5'-flap endonuclease activity|DNA binding|magnesium ion binding|phosphodiesterase I activity|ubiquitin binding				0		all_lung(180;2.23e-09)		all cancers(64;4.72e-15)|Epithelial(43;5.4e-11)|GBM - Glioblastoma multiforme(186;0.000136)|BRCA - Breast invasive adenocarcinoma(123;0.00402)|Lung(196;0.168)		ATGGAGGCCGGGGAGGCCGCT	0.577000								Direct_reversal_of_damage|Editing_and_processing_nucleases					4	120					0	0	0.00024832	0	0
RASGRP1	10125	broad.mit.edu	37	15	38793488	38793488	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr15:38793488C>T	uc001zke.3	-	13	1717	c.1539G>A	c.(1537-1539)AGG>AGA	p.R513R	RASGRP1_uc010bbe.2_Intron|RASGRP1_uc010bbf.2_Silent_p.R340R|RASGRP1_uc010bbg.2_Silent_p.R340R|RASGRP1_uc001zkd.3_Silent_p.R478R	NM_005739	NP_005730	O95267	GRP1_HUMAN	RAS guanyl releasing protein 1 isoform a	513	EF-hand 2.|2 (Potential).				cell differentiation|platelet activation|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|lipid binding|protein binding			large_intestine(1)|ovary(1)	2		all_cancers(109;6.38e-17)|all_epithelial(112;5.51e-15)|Lung NSC(122;2.12e-11)|all_lung(180;5.63e-10)|Melanoma(134;0.0574)		GBM - Glioblastoma multiforme(113;1.97e-07)|BRCA - Breast invasive adenocarcinoma(123;0.00248)		TGAGGCCTTCCCTGCCGGCAG	0.522000													14	23					0	0	0.000566183	0	0
DISP2	85455	broad.mit.edu	37	15	40660891	40660892	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr15:40660891_40660892GG>AA	uc001zlk.1	+	8	2667_2668	c.2578_2579GG>AA	c.(2578-2580)GGC>AAC	p.G860N		NM_033510	NP_277045	A7MBM2	DISP2_HUMAN	dispatched B	860					smoothened signaling pathway	integral to membrane				ovary(2)	2		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.39e-06)|Colorectal(105;0.0114)|READ - Rectum adenocarcinoma(2;0.0649)|BRCA - Breast invasive adenocarcinoma(123;0.0798)|Lung(196;0.15)|LUAD - Lung adenocarcinoma(183;0.247)		CCTCTGCTGCGGCCACTCGGAC	0.673000													10	11					0	0	6.4e-05	0	0
TGM7	116179	broad.mit.edu	37	15	43571423	43571423	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr15:43571423C>T	uc001zrf.1	-	11	1736	c.1731G>A	c.(1729-1731)ACG>ACA	p.T577T		NM_052955	NP_443187	Q96PF1	TGM7_HUMAN	transglutaminase 7	577					peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)	2		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.14e-07)	L-Glutamine(DB00130)	GCTTTTCGTCCGTTAGCTTGT	0.527000													13	16					0	0	0.000151284	0	0
FRMD5	84978	broad.mit.edu	37	15	44202087	44202087	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr15:44202087G>A	uc001ztl.2	-	5	597	c.420C>T	c.(418-420)ATC>ATT	p.I140I	FRMD5_uc001ztj.1_5'UTR|FRMD5_uc001ztk.1_Silent_p.I51I|FRMD5_uc001ztm.2_5'UTR|FRMD5_uc001ztn.2_5'UTR	NM_032892	NP_116281	Q7Z6J6	FRMD5_HUMAN	FERM domain containing 5 isoform 2	140	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(109;2.29e-15)|all_epithelial(112;9.98e-13)|Lung NSC(122;4.89e-08)|all_lung(180;5.08e-07)|Melanoma(134;0.0275)		all cancers(107;8.63e-20)|GBM - Glioblastoma multiforme(94;3.63e-06)		TACCTTGAAGGATGTAAGCTG	0.403000													27	29					0	0	0.000409698	0	0
TLN2	83660	broad.mit.edu	37	15	62949974	62949974	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr15:62949974G>C	uc002alb.3	+	6	665	c.665G>C	c.(664-666)CGG>CCG	p.R222P		NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	222	FERM.				cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						TTTCAGGCACGGGATGACATC	0.512000													3	52					0	0	0.00024832	0	0
NOX5	79400	broad.mit.edu	37	15	69340211	69340211	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr15:69340211C>T	uc002ars.1	+	13	1879	c.1859C>T	c.(1858-1860)TCC>TTC	p.S620F	NOX5_uc002arp.1_Missense_Mutation_p.S602F|NOX5_uc002arq.1_Missense_Mutation_p.S574F|NOX5_uc010bid.1_Missense_Mutation_p.S585F|NOX5_uc002arr.1_Missense_Mutation_p.S592F|NOX5_uc010bie.1_Missense_Mutation_p.S420F|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	620	Extracellular (Potential).				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						TGCCAGCACTCCTGGATCGAA	0.542000													26	40					0	0	0.000279167	0	0
Unknown	0	broad.mit.edu	37	15	73192369	73192369	+	RNA	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr15:73192369C>T	uc002avl.1	-	1		c.323G>A								full-length cDNA clone CS0DI007YP06 of Placenta Cot 25-normalized of Homo sapiens (human).																		CAGACATTTTCAAAGTTGTCA	0.423000													7	13					0	0	8.12818e-05	0	0
CCDC33	80125	broad.mit.edu	37	15	74536355	74536355	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr15:74536355C>T	uc002axo.2	+	2	445	c.51C>T	c.(49-51)ATC>ATT	p.I17I		NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	220							protein binding			ovary(3)|skin(2)	5						AGCCCCTGATCGCCTCCCAGA	0.468000													18	35					0	0	0.000375601	0	0
C15orf17	57184	broad.mit.edu	37	15	75197022	75197022	+	Missense_Mutation	SNP	C	G	G	rs138545501		TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr15:75197022C>G	uc002azh.3	-	4	733	c.412G>C	c.(412-414)GGG>CGG	p.G138R	C15orf17_uc010bkh.2_Missense_Mutation_p.G52R|C15orf17_uc002azg.2_Missense_Mutation_p.G138R|C15orf17_uc002azf.2_Missense_Mutation_p.G138R	NM_020447	NP_065180	Q5XKK7	CO017_HUMAN	hypothetical protein LOC57184	138							cytochrome-c oxidase activity				0						GATGAATACCCGGAGGAGTAT	0.552000													3	77					0	0	6.4e-05	0	0
SCAMP5	192683	broad.mit.edu	37	15	75310824	75310824	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr15:75310824C>T	uc002azk.1	+	6	623	c.461C>T	c.(460-462)CCC>CTC	p.P154L	SCAMP5_uc002azl.1_Missense_Mutation_p.P154L|SCAMP5_uc002azm.1_Missense_Mutation_p.P154L|SCAMP5_uc002azn.1_Missense_Mutation_p.P162L|SCAMP5_uc010uly.1_Missense_Mutation_p.P83L	NM_138967	NP_620417	Q8TAC9	SCAM5_HUMAN	secretory carrier membrane protein 5	154	Helical; (Potential).				exocytosis|negative regulation of endocytosis|positive regulation of calcium ion-dependent exocytosis|positive regulation of cytokine secretion|protein transport|response to endoplasmic reticulum stress	cell junction|integral to membrane|recycling endosome membrane|synaptic vesicle membrane|trans-Golgi network membrane	protein binding			ovary(1)	1						ATGCTAATTCCCACTGTCATG	0.582000													59	102					0	0	0.000781405	0	0
TBC1D2B	23102	broad.mit.edu	37	15	78317818	78317818	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr15:78317818G>A	uc002bcy.3	-	5	869	c.869C>T	c.(868-870)CCC>CTC	p.P290L	TBC1D2B_uc010bla.2_Missense_Mutation_p.P290L	NM_144572	NP_653173	Q9UPU7	TBD2B_HUMAN	TBC1 domain family, member 2B isoform a	290						intracellular	protein binding|Rab GTPase activator activity			ovary(1)|large_intestine(1)|breast(1)	3						AAAATCAAAGGGGAATCCTGA	0.299000													13	13					0	0	0.000422831	0	0
ZNF592	9640	broad.mit.edu	37	15	85326620	85326620	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr15:85326620C>T	uc002bld.2	+	4	1050	c.714C>T	c.(712-714)TTC>TTT	p.F238F	ZNF592_uc010upb.1_RNA	NM_014630	NP_055445	Q92610	ZN592_HUMAN	zinc finger protein 592	238					cell death|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(2)	6			BRCA - Breast invasive adenocarcinoma(143;0.0587)			CTCGATTCTTCGGGGAAGCTT	0.582000													43	64					0	0	0.000781405	0	0
IGF1R	3480	broad.mit.edu	37	15	99454591	99454591	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr15:99454591C>T	uc002bul.2	+	7	1560	c.1510C>T	c.(1510-1512)CGC>TGC	p.R504C	IGF1R_uc010urq.1_Missense_Mutation_p.R504C|IGF1R_uc010bon.2_Missense_Mutation_p.R504C|IGF1R_uc010urr.1_5'UTR	NM_000875	NP_000866	P08069	IGF1R_HUMAN	insulin-like growth factor 1 receptor precursor	504	Fibronectin type-III 1.				anti-apoptosis|immune response|insulin receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of DNA replication|protein autophosphorylation|protein tetramerization	microsome	ATP binding|identical protein binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor receptor activity|metal ion binding|phosphatidylinositol 3-kinase binding			lung(3)|kidney(3)|ovary(1)|central_nervous_system(1)	8	all_cancers(4;4.17e-14)|all_epithelial(3;4.34e-15)|Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		Epithelial(2;1.94e-12)|all cancers(5;6.83e-11)|BRCA - Breast invasive adenocarcinoma(2;2.88e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00261)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Mecasermin(DB01277)	GTCGAAGAATCGCATCATCAT	0.512000													18	23					0	0	0.000566183	0	0
LRRK1	79705	broad.mit.edu	37	15	101565040	101565040	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr15:101565040C>T	uc002bwr.2	+	16	2419	c.2100C>T	c.(2098-2100)ATC>ATT	p.I700I	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	700	Roc.				small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			TCTGGGACATCGGGGGACCGG	0.587000													36	57					0	0	0.000270559	0	0
RHOT2	89941	broad.mit.edu	37	16	720261	720261	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr16:720261C>T	uc002cip.2	+	7	409	c.342C>T	c.(340-342)ATC>ATT	p.I114I	RHOT2_uc002ciq.2_Intron|RHOT2_uc010bqy.2_5'Flank	NM_138769	NP_620124	Q8IXI1	MIRO2_HUMAN	ras homolog gene family, member T2	114	Miro 1.|Mitochondrial intermembrane (Potential).				apoptosis|cellular homeostasis|mitochondrion transport along microtubule|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to mitochondrial outer membrane|plasma membrane	calcium ion binding|GTP binding|GTPase activity|protein binding			pancreas(1)	1		Hepatocellular(780;0.0218)				TGCCCATCATCCTAGTGGGCA	0.642000													22	20					0	0	0.00047179	0	0
ABCA3	21	broad.mit.edu	37	16	2329039	2329039	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr16:2329039C>T	uc002cpy.1	-	29	5164	c.4452G>A	c.(4450-4452)CGG>CGA	p.R1484R	ABCA3_uc010bsk.1_Silent_p.R1426R	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	1484	ABC transporter 2.				response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				CAGGGATGCCCCGGAGCCGAG	0.652000													14	24					0	0	0.000422831	0	0
NLRC3	197358	broad.mit.edu	37	16	3614107	3614107	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr16:3614107C>T	uc010btn.2	-	5	1242	c.831G>A	c.(829-831)GGG>GGA	p.G277G		NM_178844	NP_849172	Q7RTR2	NLRC3_HUMAN	NOD3 protein	277	NACHT.				I-kappaB kinase/NF-kappaB cascade|negative regulation of NF-kappaB transcription factor activity|T cell activation	cytoplasm	ATP binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						CCACCAGGCCCCCTGGGATCT	0.597000													15	19					0	0	0.000422831	0	0
CORO7	79585	broad.mit.edu	37	16	4414791	4414791	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr16:4414791G>A	uc002cwh.3	-	12	1149	c.1029C>T	c.(1027-1029)TAC>TAT	p.Y343Y	CORO7_uc002cwe.2_RNA|CORO7_uc002cwf.2_Silent_p.Y343Y|CORO7_uc002cwg.3_Silent_p.Y123Y|CORO7_uc010uxh.1_Silent_p.Y325Y|CORO7_uc010uxi.1_Silent_p.Y258Y|CORO7_uc002cwi.1_Silent_p.Y123Y|CORO7_uc010uxj.1_RNA|CORO7_uc010btp.1_Silent_p.Y123Y	NM_024535	NP_078811	P57737	CORO7_HUMAN	coronin 7	343						cytoplasmic membrane-bounded vesicle|cytosol|Golgi membrane|integral to membrane of membrane fraction|soluble fraction					0						GGGGCACATGGTAGCCGATGG	0.701000													6	6					0	0	3.59834e-05	0	0
XYLT1	64131	broad.mit.edu	37	16	17202607	17202607	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr16:17202607C>T	uc002dfa.2	-	12	2910	c.2825G>A	c.(2824-2826)AGC>AAC	p.S942N		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	942	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						GGGGTCAGGGCTGAAGGAGCT	0.652000													5	11					0	0	0.000602214	0	0
PDZD9	255762	broad.mit.edu	37	16	21995727	21995728	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr16:21995727_21995728GG>AA	uc002dka.1	-	5	786_787	c.469_470CC>TT	c.(469-471)CCT>TTT	p.P157F		NM_173806	NP_776167	Q8IXQ8	PDZD9_HUMAN	hypothetical protein LOC255762	219										pancreas(1)	1						GTATGGAGAAGGGGCCCTCACT	0.431000													58	103					0	0	6.4e-05	0	0
C16orf92	146378	broad.mit.edu	37	16	30034974	30034974	+	Silent	SNP	A	C	C			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr16:30034974A>C	uc002dvs.2	+	2	78	c.57A>C	c.(55-57)CCA>CCC	p.P19P	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|C16orf92_uc002dvr.2_Intron	NM_001109660	NP_001103130	Q96LL3	CP092_HUMAN	hypothetical protein LOC146378 isoform 2	19						integral to membrane					0						ACAGGGTCCCAAGTCAGCTTC	0.592000													5	12					0	0	3.59834e-05	0	0
NUDT21	11051	broad.mit.edu	37	16	56473653	56473653	+	Silent	SNP	C	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr16:56473653C>A	uc002eja.2	-	4	534	c.387G>T	c.(385-387)CTG>CTT	p.L129L	NUDT21_uc002eiz.2_Silent_p.L54L	NM_007006	NP_008937	O43809	CPSF5_HUMAN	cleavage and polyadenylation specific factor 5	129	Nudix hydrolase.|Nudix box.|Necessary for interactions with PAPOLA and PABPN1.|Necessary for RNA-binding.				mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|protein tetramerization|termination of RNA polymerase II transcription	centrosome|mRNA cleavage factor complex|paraspeckles	AU-rich element binding|histone deacetylase binding|hydrolase activity|mRNA binding|protein homodimerization activity				0						CCTGACGACCCAGTATCTGTC	0.403000													8	154					2.17888e-05	0.000284005	0.000442599	1	0
PDPR	55066	broad.mit.edu	37	16	70176252	70176252	+	Silent	SNP	T	C	C			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr16:70176252T>C	uc002eyf.1	+	12	2388	c.1431T>C	c.(1429-1431)CAT>CAC	p.H477H	CLEC18C_uc002exy.2_Intron|PDPR_uc010vlr.1_Silent_p.H377H|PDPR_uc002eyg.1_Silent_p.H205H	NM_017990	NP_060460	Q8NCN5	PDPR_HUMAN	pyruvate dehydrogenase phosphatase regulatory	477					glycine catabolic process|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	aminomethyltransferase activity|oxidoreductase activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.124)		TGGAGAAACATGGATTTGAGA	0.483000													20	71					0	0	0.000375601	0	0
ATMIN	23300	broad.mit.edu	37	16	81077159	81077159	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr16:81077159C>T	uc002ffz.1	+	4	1074	c.1056C>T	c.(1054-1056)ATC>ATT	p.I352I	ATMIN_uc002fga.2_Silent_p.I194I|ATMIN_uc010vnn.1_Silent_p.I123I|ATMIN_uc002fgb.1_Silent_p.I194I	NM_015251	NP_056066	O43313	ATMIN_HUMAN	ATM interactor	352	Required for formation of RAD51 foci.				response to DNA damage stimulus	nucleus	zinc ion binding				0						GAACCCTGATCCTCGGCCTAG	0.512000													21	28					0	0	0.000229342	0	0
PLCG2	5336	broad.mit.edu	37	16	81942029	81942029	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr16:81942029C>T	uc002fgt.2	+	17	1718	c.1566C>T	c.(1564-1566)CCC>CCT	p.P522P	PLCG2_uc010chg.1_Silent_p.P522P	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	522					intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						AGGATATACCCCCTACAGAAC	0.542000													13	19					0	0	0.000422831	0	0
USP6	9098	broad.mit.edu	37	17	5058771	5058771	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr17:5058771G>A	uc002gau.1	+	31	4928	c.2698G>A	c.(2698-2700)GGA>AGA	p.G900R	USP6_uc002gav.1_Missense_Mutation_p.G900R|USP6_uc010ckz.1_Missense_Mutation_p.G583R	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	900					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						CAGCCTCTTTGGAATGCCATT	0.473000			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								22	95					0	0	0.000878237	0	0
DNAH2	146754	broad.mit.edu	37	17	7681746	7681746	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr17:7681746G>A	uc002giu.1	+	34	5514	c.5500G>A	c.(5500-5502)GAC>AAC	p.D1834N		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1834	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TGAGGGCCTGGACTACAAGTC	0.567000													16	5					0	0	0.000566183	0	0
KDM6B	23135	broad.mit.edu	37	17	7750590	7750591	+	Missense_Mutation	DNP	CC	TT	TT	rs35821012		TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr17:7750590_7750591CC>TT	uc002giw.1	+	10	1453_1454	c.1077_1078CC>TT	c.(1075-1080)GACCTT>GATTTT	p.L360F	KDM6B_uc002gix.2_5'Flank	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	360	Pro-rich.				inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|pancreas(1)	2						CCGGAAGTGACCTTAGAGAGAG	0.708000													21	86					0	0	6.4e-05	0	0
USP43	124739	broad.mit.edu	37	17	9615335	9615335	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr17:9615335C>T	uc010cod.2	+	14	2221	c.2221C>T	c.(2221-2223)CAC>TAC	p.H741Y	USP43_uc002gma.3_Missense_Mutation_p.H430Y|USP43_uc010vva.1_Missense_Mutation_p.H736Y|USP43_uc010coe.2_Missense_Mutation_p.H538Y|USP43_uc002gmc.3_Missense_Mutation_p.H253Y	NM_153210	NP_694942	Q70EL4	UBP43_HUMAN	ubiquitin specific protease 43	741					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GCTCGGGAGCCACGCTGGCAG	0.632000													6	7					0	0	8.12818e-05	0	0
DNAH9	1770	broad.mit.edu	37	17	11845635	11845635	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr17:11845635G>A	uc002gne.2	+	67	12744	c.12676G>A	c.(12676-12678)GAA>AAA	p.E4226K	DNAH9_uc010coo.2_Missense_Mutation_p.E3444K|DNAH9_uc002gnf.2_Missense_Mutation_p.E538K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	4226					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GGCACTTCTGGAAGAAATATT	0.498000													16	100					0	0	0.000958276	0	0
MYO15A	51168	broad.mit.edu	37	17	18023310	18023310	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr17:18023310A>G	uc010vxh.1	+	2	1534	c.1196A>G	c.(1195-1197)TAT>TGT	p.Y399C		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	399	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					GAGGTGCCCTATTTTTACCCG	0.622000													10	28					0	0	0.000151284	0	0
SLC13A2	9058	broad.mit.edu	37	17	26821044	26821044	+	Silent	SNP	C	G	G			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr17:26821044C>G	uc002hbh.2	+	8	1174	c.1107C>G	c.(1105-1107)TCC>TCG	p.S369S	SLC13A2_uc010wal.1_3'UTR|SLC13A2_uc010wam.1_Silent_p.S325S|SLC13A2_uc010wan.1_Silent_p.S418S|SLC13A2_uc010wao.1_Silent_p.S326S|SLC13A2_uc002hbi.2_Silent_p.S298S	NM_003984	NP_003975	Q13183	S13A2_HUMAN	solute carrier family 13, member 2 isoform b	369						integral to plasma membrane|membrane fraction	low affinity sodium:dicarboxylate symporter activity				0	all_lung(13;0.000871)|Lung NSC(42;0.0027)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)	Succinic acid(DB00139)	GCATGGTGTCCGATGGGACAG	0.617000													3	44					0	0	0.00024832	0	0
TLCD1	116238	broad.mit.edu	37	17	27051766	27051766	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr17:27051766C>G	uc002hco.2	-	4	621	c.506G>C	c.(505-507)CGG>CCG	p.R169P	TLCD1_uc010waw.1_Missense_Mutation_p.R122P	NM_138463	NP_612472	Q96CP7	TLCD1_HUMAN	TLC domain containing 1 isoform 1	169	TLC.					integral to membrane					0	Lung NSC(42;0.00431)					CTTGTTAACCCGGTAGAGGAG	0.498000													4	132					0	0	3.59834e-05	0	0
NF1	4763	broad.mit.edu	37	17	29664384	29664384	+	Splice_Site	SNP	A	G	G			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr17:29664384A>G	uc002hgg.2	+	43	6761	c.6428_splice	c.e43-2	p.E2143_splice	NF1_uc002hgh.2_Splice_Site_p.E2122_splice|NF1_uc010cso.2_Splice_Site_p.E331_splice|NF1_uc010wbt.1_5'Flank|NF1_uc010wbu.1_5'Flank	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1						actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		ATTCTCTTACAGAAGAGACCA	0.318000			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			21	15					0	0	0.000229342	0	0
C17orf66	256957	broad.mit.edu	37	17	34190533	34190533	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr17:34190533C>T	uc002hke.1	-	7	747	c.598G>A	c.(598-600)GAG>AAG	p.E200K	C17orf66_uc010wck.1_RNA|C17orf66_uc010wcl.1_Missense_Mutation_p.E160K|C17orf66_uc010wcm.1_Missense_Mutation_p.E166K	NM_152781	NP_689994	A2RTY3	CQ066_HUMAN	hypothetical protein LOC256957	200							binding			breast(2)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0184)		CGGTAGGCCTCGTACTTCACT	0.408000													13	45					0	0	0.000308642	0	0
STARD3	10948	broad.mit.edu	37	17	37818531	37818531	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr17:37818531C>T	uc002hsd.2	+	14	1291	c.1167C>T	c.(1165-1167)ATC>ATT	p.I389I	STARD3_uc010weh.1_RNA|STARD3_uc002hse.2_Silent_p.I371I|STARD3_uc010wei.1_Silent_p.I389I|STARD3_uc002hsf.2_Silent_p.I255I|STARD3_uc002hsg.2_Silent_p.I222I	NM_006804	NP_006795	Q14849	STAR3_HUMAN	StAR-related lipid transfer (START) domain	389	START.|Cytoplasmic (Potential).				cholesterol metabolic process|mitochondrial transport|steroid biosynthetic process	integral to membrane|late endosome membrane	cholesterol binding|cholesterol transporter activity				0	Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|BRCA - Breast invasive adenocarcinoma(8;1.04e-44)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			GGGGCTTCATCGTGCTCAAGT	0.587000													11	8					0	0	0.000151284	0	0
CNTNAP1	8506	broad.mit.edu	37	17	40839022	40839022	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr17:40839022C>T	uc002iay.2	+	7	1218	c.1002C>T	c.(1000-1002)ATC>ATT	p.I334I	CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	334	Laminin G-like 1.|Extracellular (Potential).				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		GCGTCAACATCGCAGACCTGG	0.597000													14	48					0	0	0.000422831	0	0
RUNDC1	146923	broad.mit.edu	37	17	41143452	41143452	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr17:41143452C>T	uc002ici.1	+	5	1573	c.1561C>T	c.(1561-1563)CAC>TAC	p.H521Y	RUNDC1_uc010whi.1_Missense_Mutation_p.H291Y	NM_173079	NP_775102	Q96C34	RUND1_HUMAN	RUN domain containing 1	521	RUN.										0		Breast(137;0.00499)		BRCA - Breast invasive adenocarcinoma(366;0.161)		GACAGCCATCCACATGGTGCT	0.557000													19	27					0	0	0.000958276	0	0
EFTUD2	9343	broad.mit.edu	37	17	42942341	42942341	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr17:42942341G>A	uc002ihn.2	-	14	1503	c.1242C>T	c.(1240-1242)CCC>CCT	p.P414P	EFTUD2_uc010wje.1_Silent_p.P379P|EFTUD2_uc010wjf.1_Silent_p.P404P	NM_004247	NP_004238	Q15029	U5S1_HUMAN	elongation factor Tu GTP binding domain	414						Cajal body|catalytic step 2 spliceosome|cytoplasm|nuclear speck	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(33;0.109)				GCCTGAGCAAGGGGCGGATGT	0.562000											OREG0024466	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	43	95					0	0	0.000781405	0	0
TBX4	9496	broad.mit.edu	37	17	59557523	59557523	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr17:59557523G>A	uc002izi.2	+	7	909	c.864G>A	c.(862-864)CCG>CCA	p.P288P	TBX4_uc010ddo.2_Silent_p.P288P|TBX4_uc010woy.1_Silent_p.P288P	NM_018488	NP_060958	P57082	TBX4_HUMAN	T-box 4	288					leg morphogenesis|skeletal system morphogenesis	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						CAGCCACACCGGACGTGGGCC	0.637000													57	39					0	0	0.000781405	0	0
ARSG	22901	broad.mit.edu	37	17	66352868	66352868	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr17:66352868T>G	uc002jhc.2	+	6	1423	c.627T>G	c.(625-627)ATT>ATG	p.I209M	ARSG_uc002jhb.1_Missense_Mutation_p.I45M	NM_014960	NP_055775	Q96EG1	ARSG_HUMAN	Arylsulfatase G precursor	209					sulfur compound metabolic process	endoplasmic reticulum|extracellular space|lysosome	arylsulfatase activity|metal ion binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(8;5.34e-07)|LUSC - Lung squamous cell carcinoma(166;0.24)			ACCTCAACATTGTGGAGCAGC	0.512000													17	35					0	0	0.00074312	0	0
DSC3	1825	broad.mit.edu	37	18	28576991	28576991	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr18:28576991G>A	uc002kwj.3	-	15	2414	c.2259C>T	c.(2257-2259)ACC>ACT	p.T753T	DSC3_uc002kwi.3_Silent_p.T753T	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	753	Cytoplasmic (Potential).				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			TGGTAGTTTGGGTCATAAATC	0.388000													14	20					0	0	0.000422831	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555130	44555130	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr18:44555130C>T	uc010xdb.1	-	1	1320	c.1084G>A	c.(1084-1086)GTT>ATT	p.V362I	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	362	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						GGTTCAAGAACCGAGTAGGGG	0.617000													13	492					0	0	0.000422831	0	0
SERPINB11	89778	broad.mit.edu	37	18	61390362	61390362	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr18:61390362C>T	uc002ljk.3	+	9	970	c.908C>T	c.(907-909)TCT>TTT	p.S303F	SERPINB11_uc010xes.1_Missense_Mutation_p.S128F|SERPINB11_uc010dqd.2_Intron|SERPINB11_uc002ljj.3_Missense_Mutation_p.S189F|SERPINB11_uc010dqe.2_Missense_Mutation_p.S102F|SERPINB11_uc010dqf.2_Missense_Mutation_p.S101F	NM_080475	NP_536723	Q96P15	SPB11_HUMAN	serpin peptidase inhibitor, clade B, member 11	303					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			breast(1)	1		Esophageal squamous(42;0.129)				CTGTTAAAATCTCTAGGGGTG	0.418000													3	5					0	0	0.000602214	0	0
PRSSL1	400668	broad.mit.edu	37	19	686951	686951	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr19:686951C>T	uc002lpl.1	-	4	650	c.619G>A	c.(619-621)GAC>AAC	p.D207N	PRSSL1_uc010xfs.1_Missense_Mutation_p.D206N	NM_214710	NP_999875	Q6UWY2	PRS57_HUMAN	protease, serine-like 1 precursor	207	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0		all_epithelial(18;2.19e-21)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGTGGCTGTCCCCACTGCGG	0.557000													14	13					0	0	0.000219431	0	0
MUC16	94025	broad.mit.edu	37	19	9073131	9073131	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr19:9073131G>A	uc002mkp.2	-	3	14519	c.14315C>T	c.(14314-14316)CCT>CTT	p.P4772L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4774	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CATAGAAACAGGAGAGGAGGT	0.483000													16	28					0	0	0.000308642	0	0
MUC16	94025	broad.mit.edu	37	19	9077387	9077387	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr19:9077387C>T	uc002mkp.2	-	3	10263	c.10059G>A	c.(10057-10059)GGG>GGA	p.G3353G		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3354	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCCCTGTGGTCCCTCCAGTAG	0.483000													41	48					0	0	0.000509022	0	0
OR7G3	390883	broad.mit.edu	37	19	9237442	9237442	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr19:9237442A>G	uc010xkl.1	-	1	185	c.185T>C	c.(184-186)CTC>CCC	p.L62P		NM_001001958	NP_001001958	Q8NG95	OR7G3_HUMAN	olfactory receptor, family 7, subfamily G,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GATAGAGAGGAGGAAGTACAT	0.537000													34	38					0	0	0.000814825	0	0
OR7D2	162998	broad.mit.edu	37	19	9297187	9297187	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr19:9297187C>T	uc002mkz.1	+	1	918	c.730C>T	c.(730-732)CAC>TAC	p.H244Y		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	244	Helical; Name=6; (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						CTGTGGGTCTCACCTCTCCGT	0.478000													17	31					0	0	0.000566183	0	0
OR7D4	125958	broad.mit.edu	37	19	9324991	9324991	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr19:9324991G>A	uc002mla.1	-	1	523	c.523C>T	c.(523-525)CCG>TCG	p.P175S		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						AAGAAATGCGGAATCTCAGTG	0.507000													19	31					0	0	0.000229342	0	0
COL5A3	50509	broad.mit.edu	37	19	10103516	10103517	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr19:10103516_10103517GG>AA	uc002mmq.1	-	21	1920_1921	c.1834_1835CC>TT	c.(1834-1836)CCC>TTC	p.P612F		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	612	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			GCGACCCGTGGGGCCAGGAGAG	0.455000													12	12					0	0	6.4e-05	0	0
ZNF763	284390	broad.mit.edu	37	19	12087920	12087920	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr19:12087920C>T	uc002msw.2	+	2	226	c.71C>T	c.(70-72)TCG>TTG	p.S24L	ZNF763_uc010xmf.1_Missense_Mutation_p.S44L|ZNF763_uc002msv.2_Missense_Mutation_p.S27L|ZNF763_uc010xmg.1_Intron	NM_001012753	NP_001012771	Q0D2J5	ZN763_HUMAN	zinc finger protein 763	24	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						CTGGATATTTCGCAGAGGAAA	0.493000													56	56					0	0	0.000781405	0	0
FFAR2	2867	broad.mit.edu	37	19	35941380	35941380	+	Missense_Mutation	SNP	G	T	T	rs150050074		TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr19:35941380G>T	uc002nzg.2	+	2	844	c.764G>T	c.(763-765)CGG>CTG	p.R255L	FFAR2_uc010eea.2_Missense_Mutation_p.R255L	NM_005306	NP_005297	O15552	FFAR2_HUMAN	free fatty acid receptor 2	255	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity|lipid binding			central_nervous_system(1)	1	all_lung(56;1.89e-08)|Lung NSC(56;2.9e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			CCCTGGTGGCGGTCAATAGCC	0.572000													6	41					3.59834e-05	0.000467681	3.59834e-05	1	0
ATP4A	495	broad.mit.edu	37	19	36050767	36050767	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr19:36050767C>T	uc002oal.1	-	7	1025	c.996G>A	c.(994-996)ATG>ATA	p.M332I	ATP4A_uc010eee.1_5'Flank	NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	332	Helical; (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	TGAAGAAGACCATGGCCCGCA	0.597000													14	14					0	0	0.000219431	0	0
RYR1	6261	broad.mit.edu	37	19	39071075	39071075	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr19:39071075C>T	uc002oit.2	+	101	14707	c.14577C>T	c.(14575-14577)TTC>TTT	p.F4859F	RYR1_uc002oiu.2_Silent_p.F4854F	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	4859					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CCTTCAACTTCTTCCGCAAGT	0.552000													10	39					0	0	6.40141e-05	0	0
LTBP4	8425	broad.mit.edu	37	19	41128911	41128912	+	Missense_Mutation	DNP	CT	TC	TC			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr19:41128911_41128912CT>TC	uc002ooh.1	+	28	3742_3743	c.3742_3743CT>TC	c.(3742-3744)CTG>TCG	p.L1248S	LTBP4_uc002oog.1_Missense_Mutation_p.L1211S|LTBP4_uc002ooi.1_Missense_Mutation_p.L1181S|LTBP4_uc002ooj.1_Missense_Mutation_p.L121S|LTBP4_uc002ook.1_Missense_Mutation_p.L382S|LTBP4_uc002ool.1_Missense_Mutation_p.L260S|LTBP4_uc010xvp.1_Intron	NM_001042544	NP_001036009	Q8N2S1	LTBP4_HUMAN	latent transforming growth factor beta binding	1248					growth hormone secretion|multicellular organismal development|protein folding|regulation of cell differentiation|regulation of cell growth|regulation of proteolysis|regulation of transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|glycosaminoglycan binding|integrin binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			central_nervous_system(1)	1			Lung(22;0.000158)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CAGTGGAGACCTGAGCCTCCGG	0.525000													8	6					0	0	6.4e-05	0	0
EXOSC5	56915	broad.mit.edu	37	19	41903196	41903196	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr19:41903196G>A	uc002oqo.2	-	1	61	c.38C>T	c.(37-39)GCT>GTT	p.A13V	CYP2F1_uc010xvw.1_Intron|BCKDHA_uc002oqm.3_Intron|BCKDHA_uc002oqp.1_5'Flank|BCKDHA_uc002oqq.2_5'Flank|BCKDHA_uc002oqr.2_5'Flank|BCKDHA_uc010xvz.1_5'Flank	NM_020158	NP_064543	Q9NQT4	EXOS5_HUMAN	exosome component Rrp46	13					DNA deamination|exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA processing	cytosol|exosome (RNase complex)|nucleolus|transcriptionally active chromatin	3'-5'-exoribonuclease activity|protein binding|RNA binding				0						TCCATTTTCAGCACGGATTTT	0.647000													25	54					0	0	0.000878237	0	0
NOVA2	4858	broad.mit.edu	37	19	46444131	46444131	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr19:46444131T>C	uc002pdv.2	-	4	517	c.469A>G	c.(469-471)ATG>GTG	p.M157V		NM_002516	NP_002507	Q9UNW9	NOVA2_HUMAN	neuro-oncological ventral antigen 2	157	KH 2.					nucleus	RNA binding				0		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00245)|GBM - Glioblastoma multiforme(486;0.0782)|Epithelial(262;0.179)		GACTGTTCCATCACGGCTTTC	0.652000													9	13					0	0	6.40141e-05	0	0
TMEM143	55260	broad.mit.edu	37	19	48848429	48848429	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr19:48848429C>T	uc002pix.1	-	4	561	c.552G>A	c.(550-552)CAG>CAA	p.Q184Q	TMEM143_uc002piw.1_RNA|TMEM143_uc002piy.1_Silent_p.Q149Q|TMEM143_uc010xzn.1_Intron|TMEM143_uc010elw.1_Intron|TMEM143_uc010xzo.1_5'UTR|TMEM143_uc010xzp.1_Intron|TMEM143_uc010xzq.1_Intron	NM_018273	NP_060743	Q96AN5	TM143_HUMAN	transmembrane protein 143	184						integral to membrane|mitochondrion					0		all_epithelial(76;9.64e-05)|all_lung(116;0.000147)|Lung NSC(112;0.000251)|Prostate(7;0.0187)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000149)|all cancers(93;0.000198)|Epithelial(262;0.0151)|GBM - Glioblastoma multiforme(486;0.0157)		GGACCTCATCCTGAGGGTGGT	0.637000													15	15					0	0	0.00074312	0	0
PRR12	57479	broad.mit.edu	37	19	50099552	50099552	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr19:50099552C>T	uc002poo.3	+	4	1960	c.1960C>T	c.(1960-1962)CGG>TGG	p.R654W		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		CAGCCCTCCTCGGACCTCAGG	0.706000													4	4					0	0	0.00024832	0	0
ZNF616	90317	broad.mit.edu	37	19	52618538	52618538	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr19:52618538G>A	uc002pym.2	-	4	2162	c.1879C>T	c.(1879-1881)CAT>TAT	p.H627Y	ZNF616_uc002pyn.2_RNA	NM_178523	NP_848618	Q08AN1	ZN616_HUMAN	zinc finger protein 616	627	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00392)|OV - Ovarian serous cystadenocarcinoma(262;0.0189)		TCTCCGGTATGAATTCTCTGA	0.433000													16	25					0	0	0.000422831	0	0
MIR522	574495	broad.mit.edu	37	19	54254478	54254478	+	RNA	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr19:54254478C>T	hsa-mir-522|MI0003177	+			c.14C>T			MIR519A1_hsa-mir-519a-1|MI0003178_5'Flank|MIR527_hsa-mir-527|MI0003179_5'Flank																	0						CAGGCTGTGTCCCTCTAGAGG	0.413000													57	85					0	0	0.000781405	0	0
NLRP9	338321	broad.mit.edu	37	19	56249681	56249681	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr19:56249681C>T	uc002qly.2	-	1	88	c.60G>A	c.(58-60)AAG>AAA	p.K20K		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	20	DAPIN.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		AAAACTCTTCCTTTCTGAGCT	0.453000													64	87					0	0	0.000781405	0	0
PEG3	5178	broad.mit.edu	37	19	57326841	57326841	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr19:57326841A>C	uc002qnu.2	-	7	3320	c.2969T>G	c.(2968-2970)ATT>AGT	p.I990S	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.I961S|PEG3_uc002qnv.2_Missense_Mutation_p.I990S|PEG3_uc002qnw.2_Missense_Mutation_p.I866S|PEG3_uc002qnx.2_Missense_Mutation_p.I864S|PEG3_uc010etr.2_Missense_Mutation_p.I990S	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	990	C2H2-type 5.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		CCTATCATGAATCTTCTGGTG	0.502000													4	65					0	0	0.000602214	0	0
NOL10	79954	broad.mit.edu	37	2	10807351	10807351	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr2:10807351G>A	uc002raq.2	-	8	709	c.584C>T	c.(583-585)ACC>ATC	p.T195I	NOL10_uc010yje.1_Missense_Mutation_p.T169I|NOL10_uc010yjf.1_Missense_Mutation_p.T145I|NOL10_uc002rap.2_Missense_Mutation_p.T195I|NOL10_uc002rar.2_Missense_Mutation_p.T45I	NM_024894	NP_079170	Q9BSC4	NOL10_HUMAN	nucleolar protein 10	195	WD 2.					nucleolus					0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.172)|OV - Ovarian serous cystadenocarcinoma(76;0.207)		TACCTCTATGGTTCCTGTGGC	0.323000													6	8					0	0	0.000157383	0	0
NBAS	51594	broad.mit.edu	37	2	15567905	15567905	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr2:15567905A>G	uc002rcc.1	-	22	2379	c.2353T>C	c.(2353-2355)TCC>CCC	p.S785P	NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	785										ovary(2)|liver(1)|skin(1)	4						ATCATCAGGGAGTCACCGTTA	0.403000													4	16					0	0	0.000602214	0	0
C2orf44	80304	broad.mit.edu	37	2	24261446	24261446	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr2:24261446C>T	uc002rep.2	-	2	1050	c.919G>A	c.(919-921)GAC>AAC	p.D307N	C2orf44_uc010eya.2_Missense_Mutation_p.D307N	NM_025203	NP_079479	Q9H6R7	CB044_HUMAN	hypothetical protein LOC80304 isoform 1	307							protein binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GTCAAGTAGTCCTTTTTTCTT	0.378000													29	29					0	0	0.000147802	0	0
SFRS7	6432	broad.mit.edu	37	2	38977228	38977228	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr2:38977228G>A	uc002rqz.2	-	2	375	c.137C>T	c.(136-138)CCT>CTT	p.P46L	SFRS7_uc002rra.2_RNA|SFRS7_uc010ynp.1_Missense_Mutation_p.P46L|GEMIN6_uc002rrb.2_5'Flank	NM_001031684	NP_001026854	Q16629	SRSF7_HUMAN	splicing factor, arginine/serine-rich 7	46	RRM.				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	nucleotide binding|protein binding|RNA binding|zinc ion binding				0		all_hematologic(82;0.248)				AAATCCTGGAGGATTTCTCGC	0.428000													43	52					0	0	0.000437636	0	0
FSHR	2492	broad.mit.edu	37	2	49381553	49381554	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr2:49381553_49381554CC>TT	uc002rww.2	-	1	77_78	c.3_4GG>AA	c.(1-6)ATGGCC>ATAACC	p.1_2MA>IT	FSHR_uc002rwx.2_Missense_Mutation_p.1_2MA>IT|FSHR_uc010fbn.2_Missense_Mutation_p.1_2MA>IT|FSHR_uc010fbo.1_RNA	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	1_2					female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	AGGAGCAGGGCCATAATTATGC	0.485000									Gonadal_Dysgenesis_46_XX				6	6					0	0	6.4e-05	0	0
SMEK2	57223	broad.mit.edu	37	2	55826001	55826001	+	Missense_Mutation	SNP	G	T	T	rs143951318		TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr2:55826001G>T	uc002rzc.2	-	4	847	c.472C>A	c.(472-474)CGT>AGT	p.R158S	SMEK2_uc002rzb.2_Missense_Mutation_p.R158S|SMEK2_uc002rzd.2_Missense_Mutation_p.R158S|SMEK2_uc002rza.2_Missense_Mutation_p.R34S	NM_001122964	NP_001116436	Q5MIZ7	P4R3B_HUMAN	SMEK homolog 2, suppressor of mek1 isoform 1	158						microtubule organizing center|nucleus	protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			TTTTCCCTACGGATAGGTGAG	0.433000													7	125					0.000157383	0.00202235	0.000157383	1	0
SEMA4C	54910	broad.mit.edu	37	2	97529814	97529814	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr2:97529814G>A	uc002sxh.3	-	11	1339	c.1179C>T	c.(1177-1179)TTC>TTT	p.F393F	SEMA4C_uc002sxf.3_5'Flank|SEMA4C_uc002sxe.2_5'Flank|SEMA4C_uc002sxg.3_Silent_p.F446F	NM_017789	NP_060259	Q9C0C4	SEM4C_HUMAN	semaphorin 4C precursor	393	Extracellular (Potential).|Dominant negative effect on myogenic differentiation (By similarity).|Sema.				muscle cell differentiation|nervous system development|positive regulation of stress-activated MAPK cascade	cell junction|integral to membrane|postsynaptic density|postsynaptic membrane|synaptic vesicle membrane	receptor activity			skin(2)	2						GCTTCTTGACGAAGTTGAGGA	0.647000													11	14					0	0	0.00010058	0	0
SMPD4	55627	broad.mit.edu	37	2	130910948	130910948	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr2:130910948G>A	uc002tqq.1	-	18	2606	c.2086C>T	c.(2086-2088)CCC>TCC	p.P696S	SMPD4_uc002tqo.1_Missense_Mutation_p.P228S|SMPD4_uc002tqp.1_Missense_Mutation_p.P435S|SMPD4_uc010yzy.1_Missense_Mutation_p.P445S|SMPD4_uc010yzz.1_Missense_Mutation_p.P360S|SMPD4_uc002tqr.1_Missense_Mutation_p.P667S|SMPD4_uc002tqs.1_Missense_Mutation_p.P564S|SMPD4_uc002tqt.1_Missense_Mutation_p.P545S|SMPD4_uc010zaa.1_Missense_Mutation_p.P554S|SMPD4_uc010zab.1_Missense_Mutation_p.P594S|SMPD4_uc010zac.1_Missense_Mutation_p.P437S|SMPD4_uc010zad.1_Missense_Mutation_p.P332S	NM_017951	NP_060421	Q9NXE4	NSMA3_HUMAN	sphingomyelin phosphodiesterase 4 isoform 2	657					sphingomyelin catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|trans-Golgi network	metal ion binding|protein binding|sphingomyelin phosphodiesterase activity|sphingomyelin phosphodiesterase D activity				0	Colorectal(110;0.1)				Phosphatidylserine(DB00144)	ATGCAGTCGGGGAGTTGCTTT	0.627000													17	25					0	0	0.000566183	0	0
LYPD1	116372	broad.mit.edu	37	2	133426022	133426022	+	Silent	SNP	C	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr2:133426022C>A	uc002ttn.2	-	2	1117	c.141G>T	c.(139-141)ACG>ACT	p.T47T	LYPD1_uc002ttm.3_Silent_p.T63T|LYPD1_uc002tto.2_5'UTR	NM_144586	NP_653187	Q8N2G4	LYPD1_HUMAN	LY6/PLAUR domain containing 1 isoform a	47	UPAR/Ly6.					anchored to membrane|plasma membrane					0						GAACGTTCACCGTGCAATTCA	0.547000													6	50					0.000442599	0.00559229	0.000442599	1	0
ACVR1	90	broad.mit.edu	37	2	158617533	158617533	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr2:158617533G>A	uc002tzm.3	-	10	1462	c.1123C>T	c.(1123-1125)CGT>TGT	p.R375C	ACVR1_uc002tzn.3_Missense_Mutation_p.R375C|ACVR1_uc010fog.2_Missense_Mutation_p.R375C	NM_001111067	NP_001104537	Q04771	ACVR1_HUMAN	activin A receptor, type I precursor	375	Cytoplasmic (Potential).|Protein kinase.		R -> P (in FOP; variant phenotype).		BMP signaling pathway|G1/S transition of mitotic cell cycle|negative regulation of activin receptor signaling pathway|negative regulation of apoptosis|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	activin receptor complex	activin binding|ATP binding|follistatin binding|metal ion binding|protein homodimerization activity|SMAD binding|transforming growth factor beta binding			ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.104)	Adenosine triphosphate(DB00171)	GTGCCCACACGGGGATTGTTC	0.483000													12	12					0	0	0.000308642	0	0
KIAA1715	80856	broad.mit.edu	37	2	176812232	176812233	+	Missense_Mutation	DNP	GG	AA	AA	rs147224445	by1000genomes	TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr2:176812232_176812233GG>AA	uc002ukc.1	-	9	874_875	c.681_682CC>TT	c.(679-684)TCCCCT>TCTTCT	p.P228S	KIAA1715_uc010zer.1_Missense_Mutation_p.P228S|KIAA1715_uc010fqw.1_Missense_Mutation_p.P294S|KIAA1715_uc010zes.1_Missense_Mutation_p.P230S|KIAA1715_uc002ukd.1_Missense_Mutation_p.P105S|KIAA1715_uc010zet.1_RNA	NM_030650	NP_085153	Q9C0E8	LNP_HUMAN	Lunapark	228	Cytoplasmic (Potential).|Pro-rich.					integral to membrane	protein binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0793)			GAAGTAGCAGGGGATCCAAGAT	0.455000													20	25					0	0	6.4e-05	0	0
TTN	7273	broad.mit.edu	37	2	179616174	179616174	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr2:179616174C>A	uc002unb.2	-	46	11177	c.10953G>T	c.(10951-10953)AAG>AAT	p.K3651N	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	9496							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCATCATTCCCTTTTGTTCCA	0.348000													18	25					1.01871e-10	1.34328e-09	0.000132079	1	0
SDPR	8436	broad.mit.edu	37	2	192700881	192700881	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr2:192700881C>T	uc002utb.2	-	2	1376	c.1046G>A	c.(1045-1047)GGG>GAG	p.G349E		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	349						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	TGCAATTTCCCCTTCCACCAG	0.562000													46	38					0	0	0.000781405	0	0
ALS2CR11	151254	broad.mit.edu	37	2	202446936	202446936	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr2:202446936G>A	uc002uye.2	-	5	569	c.521C>T	c.(520-522)CCC>CTC	p.P174L	ALS2CR11_uc002uyf.2_Missense_Mutation_p.P174L|ALS2CR11_uc010fti.2_Missense_Mutation_p.P174L	NM_152525	NP_689738	Q53TS8	AL2SA_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	174										large_intestine(1)|ovary(1)|skin(1)	3						ATAACGTCTGGGAACCTCAAT	0.289000													62	87					0	0	0.000781405	0	0
ZNF142	7701	broad.mit.edu	37	2	219507642	219507642	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr2:219507642G>A	uc002vin.2	-	8	4033	c.3597C>T	c.(3595-3597)CCC>CCT	p.P1199P	ZNF142_uc002vil.2_Silent_p.P1160P|ZNF142_uc010fvt.2_Silent_p.P1036P|ZNF142_uc002vim.2_Silent_p.P1036P	NM_001105537	NP_001099007	P52746	ZN142_HUMAN	zinc finger protein 142	1199					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;5.21e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		GGCACTGATGGGGCTTCACCC	0.622000													19	13					0	0	0.00074312	0	0
DOCK10	55619	broad.mit.edu	37	2	225630519	225630519	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr2:225630519C>T	uc010fwz.1	-	56	6719	c.6480G>A	c.(6478-6480)GTG>GTA	p.V2160V	DOCK10_uc002vob.2_Silent_p.V2154V|DOCK10_uc002voa.2_Missense_Mutation_p.G842R	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	2160							GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		AGGTTTGGTCCACTCCGCGCT	0.488000													18	11					0	0	0.000132079	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882461	228882461	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr2:228882461G>A	uc002vpq.2	-	7	3156	c.3109C>T	c.(3109-3111)CTT>TTT	p.L1037F	SPHKAP_uc002vpp.2_Missense_Mutation_p.L1037F|SPHKAP_uc010zlx.1_Missense_Mutation_p.L1037F	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1037						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TTGGCAAAAAGATTGACAGAA	0.502000													50	49					0	0	0.000781405	0	0
FASTKD5	60493	broad.mit.edu	37	20	3129453	3129453	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr20:3129453G>A	uc002whz.2	-	2	575	c.264C>T	c.(262-264)GCC>GCT	p.A88A	uc002whv.1_Intron|UBOX5_uc002whw.2_Intron|UBOX5_uc002whx.2_Intron|UBOX5_uc002why.1_Intron	NM_021826	NP_068598	Q7L8L6	FAKD5_HUMAN	FAST kinase domains 5	88					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity				0						GCAATGTACTGGCCTTAGAGG	0.473000													34	48					0	0	0.000953801	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3686463	3686463	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr20:3686463C>T	uc002wja.2	-	3	634	c.634G>A	c.(634-636)GGC>AGC	p.G212S	SIGLEC1_uc002wiz.3_Missense_Mutation_p.G212S|SIGLEC1_uc002wjc.2_Missense_Mutation_p.G123S	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	212	Ig-like C2-type 1.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						AGGATCCGGCCGTGGTCCTGC	0.622000													54	57					0	0	0.000781405	0	0
KIF16B	55614	broad.mit.edu	37	20	16355038	16355038	+	Nonsense_Mutation	SNP	G	A	A	rs141670446		TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr20:16355038G>A	uc002wpg.1	-	20	3372	c.3214C>T	c.(3214-3216)CAG>TAG	p.Q1072*	KIF16B_uc002wpe.1_Nonsense_Mutation_p.Q454*|KIF16B_uc002wpf.1_Nonsense_Mutation_p.Q454*|KIF16B_uc010gch.1_Intron|KIF16B_uc010gci.1_Nonsense_Mutation_p.Q1072*	NM_024704	NP_078980	Q96L93	KI16B_HUMAN	kinesin-like motor protein C20orf23	1072	Potential.				cell communication|early endosome to late endosome transport|endoderm development|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|formation of primary germ layer|Golgi to endosome transport|microtubule-based movement|receptor catabolic process|regulation of receptor recycling	early endosome membrane|microtubule	ATP binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|plus-end-directed microtubule motor activity			skin(2)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|ovary(1)|kidney(1)	8						TTCAGCTGCTGGATTTCATAT	0.318000													57	68					0	0	0.000781405	0	0
KIF16B	55614	broad.mit.edu	37	20	16360709	16360709	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr20:16360709G>A	uc002wpg.1	-	19	2096	c.1938C>T	c.(1936-1938)ATC>ATT	p.I646I	KIF16B_uc002wpe.1_Silent_p.I28I|KIF16B_uc002wpf.1_Silent_p.I28I|KIF16B_uc010gch.1_Silent_p.I646I|KIF16B_uc010gci.1_Silent_p.I646I|KIF16B_uc010gcj.1_Silent_p.I657I	NM_024704	NP_078980	Q96L93	KI16B_HUMAN	kinesin-like motor protein C20orf23	646	Glu-rich.|Potential.				cell communication|early endosome to late endosome transport|endoderm development|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|formation of primary germ layer|Golgi to endosome transport|microtubule-based movement|receptor catabolic process|regulation of receptor recycling	early endosome membrane|microtubule	ATP binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|plus-end-directed microtubule motor activity			skin(2)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|ovary(1)|kidney(1)	8						GGAGCTGCACGATTTCTGTCT	0.502000													73	93					0	0	0.000781405	0	0
ZNF335	63925	broad.mit.edu	37	20	44587939	44587939	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr20:44587939G>A	uc002xqw.2	-	15	2277	c.2154C>T	c.(2152-2154)TCC>TCT	p.S718S	ZNF335_uc010zxk.1_Silent_p.S563S	NM_022095	NP_071378	Q9H4Z2	ZN335_HUMAN	zinc finger protein 335	718					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|ovary(1)	4		Myeloproliferative disorder(115;0.0122)				GGCGACGGCGGGAGGGGGGCT	0.657000													28	27					0	0	0.000147802	0	0
DOPEY2	9980	broad.mit.edu	37	21	37600017	37600017	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr21:37600017C>T	uc002yvg.2	+	13	1586	c.1507C>T	c.(1507-1509)CCT>TCT	p.P503S	DOPEY2_uc011aeb.1_Missense_Mutation_p.P503S	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	503					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						CCAGTATCTCCCTCAGGTGCT	0.478000													25	28					0	0	0.000878237	0	0
DYRK1A	1859	broad.mit.edu	37	21	38884820	38884820	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr21:38884820G>A	uc002ywk.2	+	11	2353	c.2278G>A	c.(2278-2280)GTA>ATA	p.V760I	DYRK1A_uc002ywi.2_3'UTR|DYRK1A_uc002ywj.2_Missense_Mutation_p.V751I|DYRK1A_uc002ywl.2_3'UTR|DYRK1A_uc002ywm.2_3'UTR|DYRK1A_uc011aei.1_Missense_Mutation_p.V521I	NM_001396	NP_001387	Q13627	DYR1A_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	760					nervous system development|peptidyl-tyrosine phosphorylation|protein autophosphorylation	nuclear speck	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding|protein self-association|protein serine/threonine kinase activity			ovary(2)|lung(1)|breast(1)	4						ACAGAGTCCTGTAGCTAGCTC	0.423000													36	42					0	0	0.000319135	0	0
DSCR10	259234	broad.mit.edu	37	21	39580553	39580553	+	RNA	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr21:39580553G>A	uc010gnt.1	+	3		c.675G>A				NR_027695				Homo sapiens DSCR10 mRNA, complete cds.												0						GTTTGCCATCGAAGGAAAACC	0.403000													96	17					0	0	0.000781405	0	0
DSCAM	1826	broad.mit.edu	37	21	41559187	41559187	+	Splice_Site	SNP	C	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr21:41559187C>A	uc002yyq.1	-	14	3103	c.2651_splice	c.e14-1	p.E884_splice	DSCAM_uc002yyr.1_Splice_Site	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform						cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TCTGGGGGCTCTGTGCCATCA	0.478000													15	2					9.16793e-09	1.20538e-07	0.000566183	1	0
ABCG1	9619	broad.mit.edu	37	21	43708082	43708082	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr21:43708082C>T	uc002zaq.2	+	9	1163	c.1057C>T	c.(1057-1059)CAC>TAC	p.H353Y	ABCG1_uc002zan.2_Missense_Mutation_p.H355Y|ABCG1_uc002zam.2_Missense_Mutation_p.H331Y|ABCG1_uc002zao.2_Missense_Mutation_p.H350Y|ABCG1_uc002zap.2_Missense_Mutation_p.H353Y|ABCG1_uc002zar.2_Missense_Mutation_p.H364Y|ABCG1_uc011aev.1_Missense_Mutation_p.H364Y|ABCG1_uc010gpb.1_5'UTR	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	353	Cytoplasmic (Potential).				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	TGACTCAGACCACAAGAGAGA	0.552000													37	15					0	0	0.000814825	0	0
GAB4	128954	broad.mit.edu	37	22	17472893	17472893	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr22:17472893C>T	uc002zlw.2	-	2	456	c.348G>A	c.(346-348)CAG>CAA	p.Q116Q	GAB4_uc010gqs.1_Silent_p.Q116Q	NM_001037814	NP_001032903	Q2WGN9	GAB4_HUMAN	GRB2-associated binding protein family, member	116	PH.									large_intestine(1)|ovary(1)	2		all_epithelial(15;0.112)|Lung NSC(13;0.248)				TATAGCCCTTCTGAATCTCCT	0.498000													66	92					0	0	0.000781405	0	0
IL17RA	23765	broad.mit.edu	37	22	17583071	17583071	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr22:17583071C>T	uc002zly.2	+	7	774	c.641C>T	c.(640-642)GCC>GTC	p.A214V	IL17RA_uc010gqt.2_Missense_Mutation_p.A214V	NM_014339	NP_055154	Q96F46	I17RA_HUMAN	interleukin 17A receptor precursor	214	Extracellular (Potential).				fibroblast activation|positive regulation of interleukin-23 production	integral to plasma membrane	interleukin-17 receptor activity			skin(2)	2		all_epithelial(15;0.0181)|Lung NSC(13;0.109)|all_lung(157;0.132)		Colorectal(9;0.241)		ACCCTGGAGGCCCACCAGCTG	0.587000													21	34					0	0	0.000295444	0	0
LZTR1	8216	broad.mit.edu	37	22	21343934	21343934	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr22:21343934T>G	uc002zto.2	+	7	717	c.614T>G	c.(613-615)ATT>AGT	p.I205S	LZTR1_uc002ztn.2_Missense_Mutation_p.I164S|LZTR1_uc011ahy.1_Missense_Mutation_p.I186S|LZTR1_uc010gsr.1_Missense_Mutation_p.I76S	NM_006767	NP_006758	Q8N653	LZTR1_HUMAN	leucine-zipper-like transcription regulator 1	205	Kelch 3.				anatomical structure morphogenesis		sequence-specific DNA binding transcription factor activity			ovary(2)|lung(2)	4	all_cancers(11;1.83e-25)|all_epithelial(7;9.19e-23)|Lung NSC(8;3.06e-15)|all_lung(8;5.05e-14)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)			ATGTGGACAATTGGCCTCCAG	0.378000													11	8					0	0	0.00010058	0	0
RGL4	266747	broad.mit.edu	37	22	24034331	24034331	+	Silent	SNP	G	A	A	rs148535347	byFrequency	TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr22:24034331G>A	uc002zxn.2	+	1	1284	c.114G>A	c.(112-114)ACG>ACA	p.T38T	LOC91316_uc002zxh.3_RNA|LOC91316_uc002zxi.3_RNA|LOC91316_uc002zxk.3_Intron|LOC91316_uc010gua.2_Intron|LOC91316_uc002zxl.3_Intron|LOC91316_uc011aiz.1_Intron|LOC91316_uc002zxm.3_Intron|RGL4_uc002zxo.2_Silent_p.T38T|RGL4_uc002zxp.1_5'UTR|RGL4_uc002zxq.2_5'UTR	NM_153615	NP_705843	Q8IZJ4	RGDSR_HUMAN	ral guanine nucleotide dissociation	38					small GTPase mediated signal transduction	cytoplasmic membrane-bounded vesicle	guanyl-nucleotide exchange factor activity			ovary(1)	1						CAGGGCGCACGAGGGTCTGTA	0.602000													20	25					0	0	0.000175454	0	0
MFNG	4242	broad.mit.edu	37	22	37876786	37876786	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr22:37876786G>A	uc003ass.1	-	2	447	c.277C>T	c.(277-279)CCA>TCA	p.P93S	MFNG_uc011ani.1_Intron|MFNG_uc011anj.1_Intron|CARD10_uc003ast.1_RNA	NM_002405	NP_002396	O00587	MFNG_HUMAN	O-fucosylpeptide	93	Lumenal (Potential).				pattern specification process	extracellular space|integral to Golgi membrane	O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity			lung(1)	1	Melanoma(58;0.0574)					CCTTTGTCTGGGCTGTCGGTG	0.612000													11	14					0	0	0.000673444	0	0
TCF20	6942	broad.mit.edu	37	22	42608868	42608868	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr22:42608868G>A	uc003bcj.1	-	1	2578	c.2444C>T	c.(2443-2445)CCC>CTC	p.P815L	TCF20_uc003bck.1_Missense_Mutation_p.P815L|TCF20_uc003bnt.2_Missense_Mutation_p.P815L	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	815					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						GCCCCAGTGGGGATTTTCTAA	0.443000													23	29					0	0	0.000375601	0	0
FAM19A5	25817	broad.mit.edu	37	22	49103657	49103657	+	Splice_Site	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr22:49103657G>A	uc003bim.3	+	3	507	c.390_splice	c.e3+1	p.T130_splice	FAM19A5_uc003bio.3_Splice_Site_p.T123_splice	NM_001082967	NP_001076436	Q7Z5A7	F19A5_HUMAN	family with sequence similarity 19 (chemokine							extracellular region|integral to membrane				large_intestine(1)	1		all_cancers(38;2.95e-11)|all_epithelial(38;3.07e-10)|all_lung(38;2.89e-05)|Breast(42;0.000396)|Lung NSC(38;0.000471)|Ovarian(80;0.00934)|Lung SC(80;0.195)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0227)|BRCA - Breast invasive adenocarcinoma(115;0.119)		GACCACCACGGTATGTGGCCC	0.657000													28	30					0	0	0.000409698	0	0
ACR	49	broad.mit.edu	37	22	51178259	51178259	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr22:51178259G>A	uc003bnh.3	+	3	431	c.419G>A	c.(418-420)GGA>GAA	p.G140E	uc003bng.2_5'Flank|ACR_uc010hbh.1_Missense_Mutation_p.G140E	NM_001097	NP_001088	P10323	ACRO_HUMAN	acrosin precursor	140	Peptidase S1.				acrosome matrix dispersal|activation of adenylate cyclase activity	acrosomal matrix|protein complex	amidase activity|copper ion binding|DNA binding|drug binding|fucose binding|mannose binding|protein binding|serine-type endopeptidase activity|zinc ion binding				0		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;1.1e-06)|LUAD - Lung adenocarcinoma(64;0.247)		GCGACAGAGGGAAATGACATT	0.507000													42	34					0	0	0.000781405	0	0
LRRN1	57633	broad.mit.edu	37	3	3886938	3886938	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:3886938G>A	uc003bpt.3	+	2	1374	c.613G>A	c.(613-615)GGA>AGA	p.G205R	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	205	Extracellular (Potential).|LRR 6.					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		CCCTGTGATTGGAATTCTGGA	0.418000													45	48					0	0	0.000781405	0	0
GRM7	2917	broad.mit.edu	37	3	7620310	7620310	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:7620310C>T	uc003bqm.2	+	8	1991	c.1717C>T	c.(1717-1719)CGA>TGA	p.R573*	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Nonsense_Mutation_p.R573*|GRM7_uc003bql.2_Nonsense_Mutation_p.R573*|GRM7_uc003bqn.1_Nonsense_Mutation_p.R156*|GRM7_uc010hch.1_Nonsense_Mutation_p.R84*	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	573	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	CAATGAAAATCGAACCGGATG	0.522000													18	24					0	0	0.000132079	0	0
HRH1	3269	broad.mit.edu	37	3	11301037	11301037	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:11301037C>T	uc010hdr.2	+	2	656	c.314C>T	c.(313-315)TCC>TTC	p.S105F	HRH1_uc010hds.2_Missense_Mutation_p.S105F|HRH1_uc010hdt.2_Missense_Mutation_p.S105F|HRH1_uc003bwb.3_Missense_Mutation_p.S105F	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	105	Helical; Name=3; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	TTTTGGCTTTCCATGGACTAT	0.542000													58	92					0	0	0.000781405	0	0
GALNTL2	117248	broad.mit.edu	37	3	16216975	16216975	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:16216975G>A	uc003car.3	+	1	792	c.317G>A	c.(316-318)AGG>AAG	p.R106K	GALNTL2_uc003caq.3_Intron	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	106	Lumenal (Potential).					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						CAGGCCAGAAGGAACCAGAGC	0.622000													7	12					0	0	0.000673444	0	0
ZNF385D	79750	broad.mit.edu	37	3	21606113	21606113	+	Nonsense_Mutation	SNP	T	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:21606113T>A	uc003cce.2	-	3	637	c.229A>T	c.(229-231)AAG>TAG	p.K77*	ZNF385D_uc010hfb.1_RNA	NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	77						nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						ATGATTTGCTTTCTTCGGTGG	0.323000													22	34					0	0	0.000586117	0	0
SEC22C	9117	broad.mit.edu	37	3	42610483	42610483	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:42610483G>A	uc003clj.2	-	2	174	c.56C>T	c.(55-57)TCA>TTA	p.S19L	SEC22C_uc003clh.2_Missense_Mutation_p.S19L|SEC22C_uc011azo.1_5'UTR|SEC22C_uc010hic.2_Missense_Mutation_p.S19L|SEC22C_uc003cli.2_Missense_Mutation_p.S19L	NM_032970	NP_116752	Q9BRL7	SC22C_HUMAN	SEC22 vesicle trafficking protein homolog C	19	Longin.|Cytoplasmic (Potential).				ER to Golgi vesicle-mediated transport|protein transport	endoplasmic reticulum membrane|integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.222)		AGTAGAGGCTGAGAGGGGCAG	0.512000													10	21					0	0	0.000442599	0	0
BSN	8927	broad.mit.edu	37	3	49699732	49699732	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:49699732C>T	uc003cxe.3	+	6	10568	c.10454C>T	c.(10453-10455)TCC>TTC	p.S3485F		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	3485					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		AAGCCCTCATCCCTAAGTATG	0.652000													11	8					0	0	0.000673444	0	0
CAMKV	79012	broad.mit.edu	37	3	49898722	49898722	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:49898722C>T	uc003cxt.1	-	6	646	c.453G>A	c.(451-453)CTG>CTA	p.L151L	CAMKV_uc011bcy.1_Silent_p.L76L|CAMKV_uc003cxv.1_Silent_p.L151L|CAMKV_uc003cxw.1_5'UTR|CAMKV_uc003cxx.1_5'UTR|CAMKV_uc003cxu.2_Silent_p.L151L|CAMKV_uc011bcz.1_Silent_p.L114L|CAMKV_uc011bda.1_Silent_p.L108L|CAMKV_uc011bdb.1_RNA	NM_024046	NP_076951	Q8NCB2	CAMKV_HUMAN	CaM kinase-like vesicle-associated	151	Protein kinase.					cytoplasmic vesicle membrane|plasma membrane	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|large_intestine(2)|central_nervous_system(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		TGTAGTAAACCAGGTTCTCCA	0.547000													16	31					0	0	0.000132079	0	0
BAP1	8314	broad.mit.edu	37	3	52436850	52436850	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:52436850A>G	uc003ddx.2	-	15	2043	c.1928T>C	c.(1927-1929)ATT>ACT	p.I643T	BAP1_uc003ddw.2_RNA|BAP1_uc010hmg.2_RNA|BAP1_uc010hmh.2_RNA	NM_004656	NP_004647	Q92560	BAP1_HUMAN	BRCA1 associated protein-1	643	Potential.|Interaction with BRCA1.				monoubiquitinated histone H2A deubiquitination|negative regulation of cell proliferation|protein K48-linked deubiquitination|regulation of cell cycle|regulation of cell growth|ubiquitin-dependent protein catabolic process	cytoplasm|nucleolus|PR-DUB complex	chromatin binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			pleura(32)|eye(28)|lung(2)|ovary(2)|breast(1)	65				BRCA - Breast invasive adenocarcinoma(193;1.72e-05)|Kidney(197;0.0018)|KIRC - Kidney renal clear cell carcinoma(197;0.00203)|OV - Ovarian serous cystadenocarcinoma(275;0.0277)		ATAGTTTGCAATCTCAGCCTC	0.567000			N|Mis|F|S|O		uveal melanoma|breast|NSCLC								35	47					0	0	0.000781405	0	0
ITIH1	3697	broad.mit.edu	37	3	52812485	52812485	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:52812485G>A	uc003dfs.2	+	3	292	c.268G>A	c.(268-270)GAA>AAA	p.E90K	ITIH1_uc010hmn.1_RNA	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	90	VIT.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		CTTCGACCTGGAAATCCCCAA	0.552000													28	43					0	0	0.000491102	0	0
GUCA1C	9626	broad.mit.edu	37	3	108627012	108627012	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:108627012G>A	uc003dxj.2	-	4	555	c.487C>T	c.(487-489)CAG>TAG	p.Q163*	GUCA1C_uc003dxk.2_Missense_Mutation_p.S176L	NM_005459	NP_005450	O95843	GUC1C_HUMAN	guanylate cyclase activator 1C	163	EF-hand 4.				signal transduction|visual perception		calcium ion binding|calcium sensitive guanylate cyclase activator activity				0						AGGAGATCCTGATCTTTTGCC	0.413000													22	25					0	0	0.000375601	0	0
UPK1B	7348	broad.mit.edu	37	3	118909871	118909871	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:118909871C>A	uc003ecc.2	+	5	477	c.388C>A	c.(388-390)CAA>AAA	p.Q130K	UPK1B_uc011bix.1_Missense_Mutation_p.Q50K|UPK1B_uc003ecd.2_Missense_Mutation_p.Q122K	NM_006952	NP_008883	O75841	UPK1B_HUMAN	uroplakin 1B	130	Extracellular (Potential).				epithelial cell differentiation	integral to membrane	structural molecule activity				0				GBM - Glioblastoma multiforme(114;0.222)		AGAGAGGTACCAAAACAACAG	0.483000													8	178					7.48243e-07	9.78107e-06	0.000442599	1	0
TMEM39A	55254	broad.mit.edu	37	3	119165876	119165876	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:119165876G>A	uc003eck.1	-	5	927	c.564C>T	c.(562-564)TTC>TTT	p.F188F	TMEM39A_uc003ecl.1_Silent_p.F36F	NM_018266	NP_060736	Q9NV64	TM39A_HUMAN	transmembrane protein 39A	188	Helical; (Potential).					integral to membrane				ovary(1)|breast(1)	2				GBM - Glioblastoma multiforme(114;0.244)		GGTAGCCAAGGAAAAGGAGAT	0.393000													20	15					0	0	0.000295444	0	0
FBXO40	51725	broad.mit.edu	37	3	121340930	121340930	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:121340930G>A	uc003eeg.2	+	3	864	c.654G>A	c.(652-654)TGG>TGA	p.W218*		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	218					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		TTGGCCAGTGGGAAAATATTT	0.463000													13	42					0	0	0.000422831	0	0
SLC15A2	6565	broad.mit.edu	37	3	121658303	121658303	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:121658303C>T	uc003eep.2	+	20	2022	c.1869C>T	c.(1867-1869)GTC>GTT	p.V623V	SLC15A2_uc011bjn.1_Silent_p.V592V	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	623	Helical; (Potential).				protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	CTGGGGAGGTCATGTTCTCTG	0.428000													20	50					0	0	0.000132079	0	0
FAM162A	26355	broad.mit.edu	37	3	122121620	122121620	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:122121620G>C	uc003eez.2	+	2	138	c.48G>C	c.(46-48)AGG>AGC	p.R16S	FAM162A_uc011bjq.1_Missense_Mutation_p.R16S	NM_014367	NP_055182	Q96A26	F162A_HUMAN	growth and transformation-dependent protein	16						integral to membrane				ovary(1)	1						GCTGTTTTAGGTTATGTGAAA	0.353000													15	30					0	0	0.00074312	0	0
PIK3R4	30849	broad.mit.edu	37	3	130405201	130405201	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:130405201G>A	uc003enj.2	-	15	3910	c.3329C>T	c.(3328-3330)TCT>TTT	p.S1110F		NM_014602	NP_055417	Q99570	PI3R4_HUMAN	phosphoinositide-3-kinase, regulatory subunit 4	1110	WD 3.				fibroblast growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway	cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|breast(2)|skin(2)|stomach(1)|central_nervous_system(1)|kidney(1)	12						GGCAAGAACAGACTGTGCTCC	0.468000													11	21					0	0	0.00010058	0	0
TF	7018	broad.mit.edu	37	3	133494371	133494371	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:133494371G>A	uc003epu.1	+	20	3510	c.1782G>A	c.(1780-1782)GCG>GCA	p.A594A	TF_uc011blt.1_Silent_p.A467A|TF_uc003epw.1_Intron|TF_uc003epv.1_Silent_p.A594A	NM_001063	NP_001054	P02787	TRFE_HUMAN	transferrin precursor	594	Transferrin-like 2.				cellular iron ion homeostasis|platelet activation|platelet degranulation|transferrin transport|transmembrane transport	apical plasma membrane|basal plasma membrane|coated pit|early endosome|endocytic vesicle|endosome membrane|extracellular region|late endosome|perinuclear region of cytoplasm|recycling endosome|stored secretory granule	ferric iron binding			ovary(1)|skin(1)	2					Aluminium(DB01370)|Bismuth(DB01402)|Iron Dextran(DB00893)	AGGAGTATGCGAACTGCCACC	0.498000													39	61					0	0	0.000589545	0	0
RBP2	5948	broad.mit.edu	37	3	139173626	139173626	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:139173626C>T	uc003eth.2	-	3	350	c.299G>A	c.(298-300)GGG>GAG	p.G100E		NM_004164	NP_004155	P50120	RET2_HUMAN	retinol binding protein 2, cellular	100					epidermis development|retinoid metabolic process|steroid metabolic process|vitamin A metabolic process	cytosol	retinal binding|retinol binding|transporter activity			skin(1)	1					Vitamin A(DB00162)	CTCCTTCTCCCCCTTTTGCAC	0.517000													29	49					0	0	0.000814825	0	0
HLTF	6596	broad.mit.edu	37	3	148759427	148759427	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:148759427C>T	uc003ewq.1	-	20	2444	c.2226G>A	c.(2224-2226)AAG>AAA	p.K742K	HLTF_uc003ewr.1_Silent_p.K742K|HLTF_uc003ews.1_Silent_p.K741K|HLTF_uc010hve.1_Silent_p.K741K	NM_139048	NP_620636	Q14527	HLTF_HUMAN	helicase-like transcription factor	742					chromatin modification|transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			TTATTAACTTCTTTCTCAGTT	0.343000													37	60					0	0	0.000319135	0	0
AADACL2	344752	broad.mit.edu	37	3	151475314	151475314	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:151475314C>T	uc003ezc.2	+	5	1258	c.1138C>T	c.(1138-1140)CCA>TCA	p.P380S	AADACL2_uc010hvn.2_Missense_Mutation_p.P167S	NM_207365	NP_997248	Q6P093	ADCL2_HUMAN	arylacetamide deacetylase-like 2 precursor	380						extracellular region|integral to membrane	carboxylesterase activity				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			CATGACTTCACCATTTTATTT	0.338000													26	36					0	0	0.000720815	0	0
DHX36	170506	broad.mit.edu	37	3	154027597	154027597	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:154027597T>G	uc003ezy.3	-	5	739	c.658A>C	c.(658-660)ATT>CTT	p.I220L	DHX36_uc010hvq.2_Missense_Mutation_p.I220L|DHX36_uc003ezz.3_Missense_Mutation_p.I220L	NM_020865	NP_065916	Q9H2U1	DHX36_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 36	220	Helicase ATP-binding.					cytoplasm|nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			TGGTTATCAATTAAATTTACC	0.308000													9	10					0	0	0.000673444	0	0
SLITRK3	22865	broad.mit.edu	37	3	164907975	164907975	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:164907975C>T	uc003fej.3	-	2	1088	c.644G>A	c.(643-645)GGA>GAA	p.G215E	SLITRK3_uc003fek.2_Missense_Mutation_p.G215E	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	215	Extracellular (Potential).|LRR 6.					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						ATCTAGCATTCCTCGGTAAAA	0.423000										HNSCC(40;0.11)			31	37					0	0	0.000491102	0	0
ZBBX	79740	broad.mit.edu	37	3	167000284	167000284	+	Splice_Site	SNP	C	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:167000284C>A	uc003fep.2	-	19	2203	c.1880_splice	c.e19-1	p.G627_splice	ZBBX_uc011bpc.1_Splice_Site_p.G666_splice|ZBBX_uc003feq.2_Splice_Site_p.G598_splice	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing							intracellular	zinc ion binding			ovary(2)	2						GATTTCTGACCTAAAATTAAA	0.338000													9	154					0.000442599	0.00559229	0.000442599	1	0
EHHADH	1962	broad.mit.edu	37	3	184910256	184910256	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:184910256C>T	uc003fpf.2	-	7	1957	c.1930G>A	c.(1930-1932)GAG>AAG	p.E644K	EHHADH_uc011brs.1_Missense_Mutation_p.E548K	NM_001966	NP_001957	Q08426	ECHP_HUMAN	enoyl-Coenzyme A, hydratase/3-hydroxyacyl	644						peroxisome	3-hydroxyacyl-CoA dehydrogenase activity|coenzyme binding|dodecenoyl-CoA delta-isomerase activity|enoyl-CoA hydratase activity			ovary(3)	3	all_cancers(143;4.04e-11)|Ovarian(172;0.0339)|Breast(254;0.247)		Epithelial(37;1.98e-32)|OV - Ovarian serous cystadenocarcinoma(80;5.55e-21)		NADH(DB00157)	TCAATGTGCTCTGGGCTAGCA	0.478000													31	45					0	0	0.000814825	0	0
LPP	4026	broad.mit.edu	37	3	188327486	188327486	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:188327486C>T	uc003frs.1	+	6	1213	c.967C>T	c.(967-969)CCA>TCA	p.P323S	LPP_uc011bsg.1_Intron|LPP_uc011bsi.1_Missense_Mutation_p.P323S|LPP_uc003frt.2_Missense_Mutation_p.P323S|LPP_uc011bsj.1_Missense_Mutation_p.P160S	NM_005578	NP_005569	Q93052	LPP_HUMAN	LIM domain containing preferred translocation	323	Pro-rich.				cell adhesion	cytoplasm|focal adhesion|nucleus	protein binding|zinc ion binding		HMGA2/LPP(161)	soft_tissue(134)|bone(27)|lung(2)|ovary(1)|breast(1)	165	all_cancers(143;1.37e-09)|all_hematologic(3;0.0429)|Ovarian(172;0.088)	all_lung(153;0.00139)|Lung NSC(153;0.00202)		GBM - Glioblastoma multiforme(93;0.00602)		ACAAGGTCACCCAAATACCTG	0.542000			T	HMGA2|MLL|C12orf9	lipoma|leukemia								13	14					0	0	0.000308642	0	0
ATP13A4	84239	broad.mit.edu	37	3	193210912	193210912	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr3:193210912C>T	uc003ftd.2	-	4	527	c.419G>A	c.(418-420)TGG>TAG	p.W140*	ATP13A4_uc003fte.1_Nonsense_Mutation_p.W140*|ATP13A4_uc011bsr.1_5'UTR	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	140	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		TAAGTAGTTCCAAACATATCT	0.333000													29	43					0	0	0.000953801	0	0
SH3TC1	54436	broad.mit.edu	37	4	8220074	8220074	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr4:8220074G>A	uc003gkv.3	+	8	1017	c.916G>A	c.(916-918)GCT>ACT	p.A306T	SH3TC1_uc003gkw.3_Missense_Mutation_p.A230T|SH3TC1_uc003gkx.3_RNA	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	306	SH3.						binding			large_intestine(2)|pancreas(1)	3						CCCGCTGATGGGTAAGTGTTT	0.577000													20	8					0	0	0.000295444	0	0
ACOX3	8310	broad.mit.edu	37	4	8417696	8417696	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr4:8417696G>A	uc010idk.2	-	3	320	c.175C>T	c.(175-177)CCT>TCT	p.P59S	ACOX3_uc003glc.3_Missense_Mutation_p.P59S|ACOX3_uc003gld.3_Missense_Mutation_p.P59S|ACOX3_uc003gle.1_5'UTR	NM_003501	NP_003492	O15254	ACOX3_HUMAN	acyl-Coenzyme A oxidase 3 isoform a	59					bile acid metabolic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|pristanoyl-CoA oxidase activity			central_nervous_system(1)	1						GCGAAAAGAGGGTCATTCTCA	0.478000													11	51					0	0	0.00010058	0	0
FBXL5	26234	broad.mit.edu	37	4	15627231	15627231	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr4:15627231A>C	uc003goc.1	-	9	1597	c.1494T>G	c.(1492-1494)CAT>CAG	p.H498Q	FBXL5_uc010idw.1_Missense_Mutation_p.H411Q|FBXL5_uc003gob.1_Missense_Mutation_p.H372Q|FBXL5_uc010idx.1_Missense_Mutation_p.H497Q|FBXL5_uc003god.1_Missense_Mutation_p.H481Q|FBXL5_uc010idy.1_Missense_Mutation_p.H498Q	NM_012161	NP_036293	Q9UKA1	FBXL5_HUMAN	F-box and leucine-rich repeat protein 5 isoform	498	LRR 4.				iron ion homeostasis|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm|SCF ubiquitin ligase complex	iron ion binding|protein binding|ubiquitin-protein ligase activity				0						CAACATTTCTATGTCTCCATT	0.388000													52	37					0	0	0.000781405	0	0
PDGFRA	5156	broad.mit.edu	37	4	55139894	55139894	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr4:55139894C>T	uc003han.3	+	10	1886	c.1555C>T	c.(1555-1557)CCC>TCC	p.P519S	PDGFRA_uc003haa.2_Intron|PDGFRA_uc010igq.1_Missense_Mutation_p.P413S|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	519	Extracellular (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	GCTGGTGGCTCCCAGTGAGTT	0.547000			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			25	4					0	0	0.000878237	0	0
UGT2B4	7363	broad.mit.edu	37	4	70359506	70359506	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr4:70359506G>A	uc003hek.3	-	2	822	c.775C>T	c.(775-777)CGA>TGA	p.R259*	UGT2B4_uc011cap.1_Nonsense_Mutation_p.R123*|UGT2B4_uc003hel.3_Nonsense_Mutation_p.R259*	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	259					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						CAGTAGTTTCGAATAAGCCAT	0.413000													27	5					0	0	0.000878237	0	0
UNC5C	8633	broad.mit.edu	37	4	96171773	96171773	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr4:96171773G>A	uc003htp.1	-	5	794	c.640C>T	c.(640-642)CGG>TGG	p.R214W	UNC5C_uc010ilc.1_Missense_Mutation_p.R214W|UNC5C_uc003htq.2_Missense_Mutation_p.R214W	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	214	Extracellular (Potential).|Ig-like C2-type.				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		TAAAAATTCCGATCTTCAACG	0.383000													46	52					0	0	0.000781405	0	0
ZFR	51663	broad.mit.edu	37	5	32397366	32397367	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr5:32397366_32397367CC>AA	uc003jhr.1	-	10	1871_1872	c.1791_1792GG>TT	c.(1789-1794)AAGGAG>AATTAG	p.597_598KE>N*	MIR579_hsa-mir-579|MI0003586_5'Flank	NM_016107	NP_057191	Q96KR1	ZFR_HUMAN	zinc finger RNA binding protein	597_598					multicellular organismal development	chromosome|cytoplasm|nucleus	DNA binding|RNA binding|zinc ion binding				0				STAD - Stomach adenocarcinoma(35;0.19)		AAGTGCATCTCCTTAGCATTGG	0.337000													10	161					0	0	6.4e-05	0	0
SEPP1	6414	broad.mit.edu	37	5	42808366	42808366	+	RNA	SNP	T	C	C			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr5:42808366T>C	uc011cps.1	-	3		c.278A>G			SEPP1_uc011cpt.1_RNA|SEPP1_uc011cpu.1_RNA|SEPP1_uc011cpv.1_RNA|SEPP1_uc003jna.2_RNA			P49908	SEPP1_HUMAN	Homo sapiens cDNA FLJ37321 fis, clone BRAMY2018122.						response to oxidative stress	extracellular region	selenium binding				0						AGGCTGGGGGTTGCTTACATA	0.532000													32	4					0	0	0.000491102	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64766717	64766717	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr5:64766717C>T	uc003jtp.2	-	3	1164	c.350G>A	c.(349-351)GGG>GAG	p.G117E	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_5'UTR	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	117					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		TCCATCTTTCCCCCAATATTC	0.358000													54	7					0	0	0.000781405	0	0
CRHBP	1393	broad.mit.edu	37	5	76249874	76249874	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr5:76249874C>T	uc003ker.2	+	3	476	c.196C>T	c.(196-198)CTC>TTC	p.L66F	CRHBP_uc010izx.2_Missense_Mutation_p.L66F	NM_001882	NP_001873	P24387	CRHBP_HUMAN	corticotropin releasing hormone binding protein	66					female pregnancy|learning or memory|signal transduction	soluble fraction					0		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;2.17e-51)|Epithelial(54;8.79e-46)|all cancers(79;2.49e-41)		CATGCTGAGCCTCCAGGGCCA	0.687000													138	22					0	0	0.000781405	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111541138	111541139	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr5:111541138_111541139CC>AA	uc003kpv.1	-	14	1515_1516	c.1241_1242GG>TT	c.(1240-1242)TGG>TTT	p.W414F	EPB41L4A_uc003kpp.1_Missense_Mutation_p.W41F	NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	414						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		CATTTTCTTCCCACGGTGCATG	0.351000													11	361					0	0	6.4e-05	0	0
PCDHB2	56133	broad.mit.edu	37	5	140474589	140474589	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr5:140474589G>A	uc003lil.2	+	1	353	c.215G>A	c.(214-216)GGA>GAA	p.G72E	PCDHB2_uc003lim.1_Intron	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	72	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTTTCCAAAGGAAAAAAAATG	0.522000													61	7					0	0	0.000781405	0	0
PCDHGA12	26025	broad.mit.edu	37	5	140812560	140812560	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr5:140812560G>C	uc003lkt.1	+	1	2403	c.2234G>C	c.(2233-2235)GGG>GCG	p.G745A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc011dba.1_Missense_Mutation_p.G745A	NM_003735	NP_003726	O60330	PCDGC_HUMAN	protocadherin gamma subfamily A, 12 isoform 1	745	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCGTGGACGGGGTGCAGGCT	0.642000													4	77					0	0	0.000602214	0	0
SH3RF2	153769	broad.mit.edu	37	5	145439717	145439717	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr5:145439717C>A	uc003lnt.2	+	9	2082	c.1844C>A	c.(1843-1845)CCA>CAA	p.P615Q	SH3RF2_uc011dbl.1_Missense_Mutation_p.P615Q|SH3RF2_uc011dbm.1_Missense_Mutation_p.P100Q|SH3RF2_uc003lnu.2_Missense_Mutation_p.P106Q|SH3RF2_uc011dbn.1_Missense_Mutation_p.P106Q|SH3RF2_uc011dbo.1_Missense_Mutation_p.P72Q	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	615							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GAGCCTCTGCCAAAACCGCCC	0.552000													22	43					8.24728e-16	1.09066e-14	0.000720815	1	0
RBM27	54439	broad.mit.edu	37	5	145613065	145613065	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr5:145613065T>G	uc003lnz.3	+	7	1069	c.903T>G	c.(901-903)GAT>GAG	p.D301E	RBM27_uc003lny.2_Missense_Mutation_p.D301E	NM_018989	NP_061862	Q9P2N5	RBM27_HUMAN	RNA binding motif protein 27	301	C3H1-type.				mRNA processing	cytoplasm|nuclear speck	nucleotide binding|RNA binding|zinc ion binding			central_nervous_system(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ATGGAAATGATCCCCTAGTTG	0.423000													158	26					0	0	0.000781405	0	0
GRIA1	2890	broad.mit.edu	37	5	153190584	153190584	+	Splice_Site	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr5:153190584G>A	uc003lva.3	+	16	2886	c.2521_splice	c.e16-1	p.G841_splice	GRIA1_uc003luy.3_Splice_Site_p.G841_splice|GRIA1_uc003luz.3_Splice_Site_p.G746_splice|GRIA1_uc011dcv.1_Splice_Site|GRIA1_uc011dcw.1_Splice_Site_p.G761_splice|GRIA1_uc011dcx.1_Splice_Site_p.G772_splice|GRIA1_uc011dcy.1_Splice_Site_p.G851_splice|GRIA1_uc011dcz.1_Splice_Site_p.G851_splice	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform						synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CTCCTGAAAAGGGTTTTTGTT	0.557000													34	8					0	0	0.00058488	0	0
FAM114A2	10827	broad.mit.edu	37	5	153374484	153374484	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr5:153374484G>A	uc003lvb.2	-	13	1966	c.1378C>T	c.(1378-1380)CTA>TTA	p.L460L	FAM114A2_uc003lvc.2_Silent_p.L460L|FAM114A2_uc003lvd.2_Silent_p.L460L|FAM114A2_uc003lve.2_Silent_p.L276L|FAM114A2_uc011dda.1_Silent_p.L390L	NM_018691	NP_061161	Q9NRY5	F1142_HUMAN	hypothetical protein LOC10827	460							purine nucleotide binding				0						CTAACCTCTAGAAATACTGCA	0.328000													55	4					0	0	0.000781405	0	0
DOCK2	1794	broad.mit.edu	37	5	169494644	169494644	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr5:169494644G>A	uc003maf.2	+	45	4678	c.4598G>A	c.(4597-4599)GGG>GAG	p.G1533E	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.G1025E|DOCK2_uc003mah.2_Missense_Mutation_p.G89E	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1533	DHR-2.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CTCCTGAACGGGATTGTGGAC	0.532000													70	7					0	0	0.000781405	0	0
HIST1H1B	3009	broad.mit.edu	37	6	27834907	27834907	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr6:27834907G>A	uc003njx.2	-	1	453	c.401C>T	c.(400-402)CCC>CTC	p.P134L		NM_005322	NP_005313	P16401	H15_HUMAN	histone cluster 1, H1b	134					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(2)|lung(1)	3						GGCCCCCGCGGGCTTCTTAGC	0.617000													132	19					0	0	0.000781405	0	0
DDR1	780	broad.mit.edu	37	6	30859856	30859856	+	Missense_Mutation	SNP	G	T	T	rs112944019		TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr6:30859856G>T	uc003nrr.2	+	8	1002	c.743G>T	c.(742-744)CGG>CTG	p.R248L	DDR1_uc010jse.2_Missense_Mutation_p.R248L|DDR1_uc003nrq.2_Missense_Mutation_p.R248L|DDR1_uc003nrs.2_Missense_Mutation_p.R248L|DDR1_uc003nrt.2_Missense_Mutation_p.R248L|DDR1_uc011dms.1_Missense_Mutation_p.R266L|DDR1_uc003nru.2_Missense_Mutation_p.R248L|DDR1_uc011dmu.1_Missense_Mutation_p.G215W|DDR1_uc003nrv.2_Missense_Mutation_p.R248L|DDR1_uc003nrw.1_Missense_Mutation_p.R47L|DDR1_uc003nry.1_5'Flank|DDR1_uc003nrx.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	248	Extracellular (Potential).				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	CAGGAGCTGCGGGTCTGGCCA	0.577000													7	78					3.86212e-05	0.000499105	0.000673444	1	0
ANKS1A	23294	broad.mit.edu	37	6	34950958	34950958	+	Missense_Mutation	SNP	C	A	A	rs74871455		TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr6:34950958C>A	uc003ojx.3	+	6	1019	c.877C>A	c.(877-879)CAA>AAA	p.Q293K	ANKS1A_uc011dss.1_Missense_Mutation_p.Q293K|ANKS1A_uc011dst.1_5'UTR|ANKS1A_uc010jvp.1_5'UTR	NM_015245	NP_056060	Q92625	ANS1A_HUMAN	ankyrin repeat and sterile alpha motif domain	293						cytoplasm	protein binding			ovary(3)|upper_aerodigestive_tract(1)	4						ACTGCCTTCTCAAAAGAGCCA	0.478000													10	193					0.000673444	0.00843851	0.000673444	1	0
KCNK5	8645	broad.mit.edu	37	6	39158965	39158965	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr6:39158965C>T	uc003oon.2	-	5	1565	c.1201G>A	c.(1201-1203)GAA>AAA	p.E401K		NM_003740	NP_003731	O95279	KCNK5_HUMAN	potassium channel, subfamily K, member 5	401					excretion	integral to plasma membrane	potassium channel activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						GGCTCGCATTCCTCGCTGATG	0.627000													33	4					0	0	0.000692331	0	0
DSE	29940	broad.mit.edu	37	6	116752185	116752185	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr6:116752185C>T	uc003pws.2	+	4	933	c.739C>T	c.(739-741)CTC>TTC	p.L247F	DSE_uc011ebg.1_Missense_Mutation_p.L266F|DSE_uc003pwt.2_Missense_Mutation_p.L247F|DSE_uc003pwu.2_5'Flank	NM_001080976	NP_001074445	Q9UL01	DSE_HUMAN	dermatan sulfate epimerase precursor	247					dermatan sulfate biosynthetic process	endoplasmic reticulum|Golgi apparatus|integral to membrane	chondroitin-glucuronate 5-epimerase activity			ovary(1)	1		all_cancers(87;0.00019)|all_epithelial(87;0.000416)|Ovarian(999;0.133)|Colorectal(196;0.234)		Epithelial(106;0.00915)|OV - Ovarian serous cystadenocarcinoma(136;0.0149)|GBM - Glioblastoma multiforme(226;0.0189)|all cancers(137;0.0262)		TCTGGTCTTGCTCAGGGAGGT	0.463000													28	5					0	0	0.000227799	0	0
ENPP1	5167	broad.mit.edu	37	6	132206095	132206095	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr6:132206095C>T	uc011ecf.1	+	23	2356	c.2336C>T	c.(2335-2337)ACC>ATC	p.T779I		NM_006208	NP_006199	P22413	ENPP1_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	779	Nuclease.|Extracellular (Potential).				3'-phosphoadenosine 5'-phosphosulfate metabolic process|biomineral tissue development|cellular phosphate ion homeostasis|cellular response to insulin stimulus|generation of precursor metabolites and energy|immune response|inorganic diphosphate transport|negative regulation of cell growth|negative regulation of fat cell differentiation|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of protein autophosphorylation|nucleoside triphosphate catabolic process|phosphate metabolic process|sequestering of triglyceride|water-soluble vitamin metabolic process	basolateral plasma membrane|cell surface|extracellular space|integral to membrane	ATP binding|insulin receptor binding|metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|protein homodimerization activity|scavenger receptor activity			upper_aerodigestive_tract(2)|ovary(2)	4	Breast(56;0.0505)			GBM - Glioblastoma multiforme(226;0.0216)|OV - Ovarian serous cystadenocarcinoma(155;0.022)	Amifostine(DB01143)|Ribavirin(DB00811)	TTTCATGACACCCTACTGCGA	0.393000													22	6					0	0	0.000720815	0	0
MAP7	9053	broad.mit.edu	37	6	136667071	136667072	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr6:136667071_136667072GG>AA	uc003qgz.2	-	17	2407_2408	c.2161_2162CC>TT	c.(2161-2163)CCA>TTA	p.P721L	MAP7_uc011edf.1_Missense_Mutation_p.P706L|MAP7_uc011edg.1_Missense_Mutation_p.P751L|MAP7_uc010kgu.2_Missense_Mutation_p.P743L|MAP7_uc011edh.1_Missense_Mutation_p.P706L|MAP7_uc010kgv.2_Missense_Mutation_p.P743L|MAP7_uc010kgs.2_Missense_Mutation_p.P575L|MAP7_uc011edi.1_Missense_Mutation_p.P575L|MAP7_uc010kgq.1_Missense_Mutation_p.P627L|MAP7_uc003qha.1_Missense_Mutation_p.P684L	NM_003980	NP_003971	Q14244	MAP7_HUMAN	microtubule-associated protein 7	721					establishment or maintenance of cell polarity|microtubule cytoskeleton organization|protein localization in plasma membrane|response to osmotic stress	basolateral plasma membrane|microtubule|microtubule associated complex|nucleus|perinuclear region of cytoplasm	receptor binding|structural molecule activity				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00199)|OV - Ovarian serous cystadenocarcinoma(155;0.00643)		GGCCAAAATTGGATTCAAAGGA	0.436000													12	3					0	0	6.4e-05	0	0
MAP3K5	4217	broad.mit.edu	37	6	136944008	136944008	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr6:136944008C>T	uc003qhc.2	-	15	2489	c.2128G>A	c.(2128-2130)GAA>AAA	p.E710K	MAP3K5_uc011edj.1_Intron|MAP3K5_uc011edk.1_Missense_Mutation_p.E555K	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	710	Protein kinase.				activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		TCTGGGATTTCCTTAATAGCA	0.393000													89	26					0	0	0.000781405	0	0
FBXO30	84085	broad.mit.edu	37	6	146127255	146127255	+	Missense_Mutation	SNP	C	T	T	rs147203065		TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr6:146127255C>T	uc003qla.2	-	2	486	c.287G>A	c.(286-288)CGA>CAA	p.R96Q	uc003qky.1_Intron	NM_032145	NP_115521	Q8TB52	FBX30_HUMAN	F-box only protein 30	96	TRAF-type.						ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Ovarian(120;0.0776)		OV - Ovarian serous cystadenocarcinoma(155;1.95e-07)|GBM - Glioblastoma multiforme(68;0.0149)		AACTGGCCATCGATTCCATTC	0.433000													9	23					0	0	0.000673444	0	0
PLG	5340	broad.mit.edu	37	6	161123349	161123349	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr6:161123349G>A	uc003qtm.3	+	1	76	c.13G>A	c.(13-15)GAA>AAA	p.E5K		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	5					extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	GGAACATAAGGAAGTGGTTCT	0.363000													38	17					0	0	0.000781405	0	0
FBXL18	80028	broad.mit.edu	37	7	5540613	5540613	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr7:5540613C>T	uc003soo.2	-	3	1381	c.1287G>A	c.(1285-1287)GCG>GCA	p.A429A	FBXL18_uc003son.3_Silent_p.A429A	NM_024963	NP_079239	Q96ME1	FXL18_HUMAN	F-box and leucine-rich repeat protein 18	429										central_nervous_system(2)|ovary(1)	3		Ovarian(82;0.0607)		UCEC - Uterine corpus endometrioid carcinoma (126;0.181)|OV - Ovarian serous cystadenocarcinoma(56;3.64e-13)		cggcgcgcggcgcggAGTCAG	0.557000													5	9					0	0	0.000602214	0	0
CREB5	9586	broad.mit.edu	37	7	28848877	28848877	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr7:28848877G>A	uc003szq.2	+	9	1490	c.1100G>A	c.(1099-1101)CGA>CAA	p.R367Q	CREB5_uc003szo.2_Missense_Mutation_p.R334Q|CREB5_uc003szr.2_Missense_Mutation_p.R360Q|CREB5_uc003szs.2_Missense_Mutation_p.R228Q	NM_182898	NP_878901	Q02930	CREB5_HUMAN	cAMP responsive element binding protein 5	367					positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						GGGCGCCGGCGAAGGGTGGTA	0.632000													92	105					0	0	0.000781405	0	0
IGFBP1	3484	broad.mit.edu	37	7	45930178	45930178	+	Silent	SNP	G	T	T	rs142789241		TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr7:45930178G>T	uc003tnp.2	+	2	674	c.381G>T	c.(379-381)ACG>ACT	p.T127T	IGFBP1_uc003tno.3_Silent_p.T127T|IGFBP1_uc010kyn.2_Silent_p.T127T	NM_000596	NP_000587	P08833	IBP1_HUMAN	insulin-like growth factor binding protein 1	127						extracellular space	insulin-like growth factor binding			lung(1)	1						CAGAGAGCACGGAGATAACTG	0.552000													6	63					0.000157383	0.00202235	0.000157383	1	0
ZNF107	51427	broad.mit.edu	37	7	64167466	64167466	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr7:64167466C>T	uc003ttd.2	+	7	1570	c.784C>T	c.(784-786)CAT>TAT	p.H262Y	ZNF107_uc003tte.2_Missense_Mutation_p.H262Y	NM_016220	NP_057304	Q9UII5	ZN107_HUMAN	zinc finger protein 107	262	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(55;0.00948)|all_lung(88;0.0249)				TCTTACTAACCATAAGAGAAT	0.358000													14	19					0	0	0.000219431	0	0
ZNF117	51351	broad.mit.edu	37	7	64438953	64438953	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr7:64438953G>A	uc003ttr.2	-	4	2281	c.996C>T	c.(994-996)CCC>CCT	p.P332P		NM_015852	NP_056936	Q03924	ZN117_HUMAN	zinc finger protein 117	332						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1		Lung NSC(55;0.0295)|all_lung(88;0.0691)				CACATTTGTAGGGTTTCTCTC	0.358000													11	18					0	0	0.00010058	0	0
WBSCR17	64409	broad.mit.edu	37	7	71175764	71175764	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr7:71175764G>A	uc003tvy.2	+	10	1519	c.1519G>A	c.(1519-1521)GAA>AAA	p.E507K	WBSCR17_uc003tvz.2_Missense_Mutation_p.E206K	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	507	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				CTACACCAAGGAAGGCTTCCT	0.632000													36	21					0	0	0.000680045	0	0
POM121	9883	broad.mit.edu	37	7	72418883	72418884	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr7:72418883_72418884CC>TT	uc010lam.1	+	16	3915_3916	c.2874_2875CC>TT	c.(2872-2877)CACCAG>CATTAG	p.Q959*	NSUN5P2_uc003twl.2_RNA|NSUN5P2_uc003twm.2_3'UTR|NSUN5P2_uc003twn.2_3'UTR|NSUN5P2_uc003two.2_3'UTR|NSUN5P2_uc003twq.2_3'UTR|NSUN5P2_uc010lan.1_3'UTR|NSUN5P2_uc003twp.2_3'UTR	NM_172020	NP_742017	Q96HA1	P121A_HUMAN	nuclear pore membrane protein 121	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore					0		Lung NSC(55;0.163)				CTTTTGCTCACCAGCAAGAACA	0.475000													27	22					0	0	6.4e-05	0	0
CACNA2D1	781	broad.mit.edu	37	7	81600048	81600048	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr7:81600048C>T	uc003uhr.1	-	27	2403	c.2147G>A	c.(2146-2148)GGA>GAA	p.G716E	CACNA2D1_uc011kgy.1_5'UTR	NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	728	Extracellular (Potential).					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	TGCTTTCACTCCCTTGCTGAA	0.338000													17	23					0	0	0.000958276	0	0
PCLO	27445	broad.mit.edu	37	7	82453683	82453683	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr7:82453683C>A	uc003uhx.2	-	19	14754	c.14465G>T	c.(14464-14466)TGG>TTG	p.W4822L	PCLO_uc003uhv.2_Missense_Mutation_p.W4822L|PCLO_uc003uht.1_Missense_Mutation_p.W264L|PCLO_uc003uhu.1_Missense_Mutation_p.W243L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4684					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GAGAGGATACCACCTTGGAGT	0.388000													19	30					2.98393e-07	3.91188e-06	0.000375601	1	0
PCLO	27445	broad.mit.edu	37	7	82763974	82763974	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr7:82763974C>T	uc003uhx.2	-	3	3181	c.2892G>A	c.(2890-2892)ATG>ATA	p.M964I	PCLO_uc003uhv.2_Missense_Mutation_p.M964I	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	910	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGGCTTGTTTCATTGGGGCCC	0.507000													7	13					0	0	0.000157383	0	0
C7orf63	79846	broad.mit.edu	37	7	89903330	89903330	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr7:89903330T>C	uc010lep.2	+	9	1141	c.890T>C	c.(889-891)TTT>TCT	p.F297S	C7orf63_uc003ukf.2_RNA|C7orf63_uc003ukg.2_Intron|C7orf63_uc011khj.1_Missense_Mutation_p.F279S	NM_001039706	NP_001034795	A5D8W1	CG063_HUMAN	hypothetical protein LOC79846 isoform 1	297							binding			ovary(1)	1						AAAAATCTGTTTATGAGAGGT	0.244000													3	44					0	0	6.4e-05	0	0
FLNC	2318	broad.mit.edu	37	7	128487841	128487841	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr7:128487841G>C	uc003vnz.3	+	25	4588	c.4379G>C	c.(4378-4380)CGG>CCG	p.R1460P	FLNC_uc003voa.3_Missense_Mutation_p.R1460P	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1460	Filamin 13.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GTCAGGGCCCGGGTTCCTCAG	0.667000													3	41					0	0	6.4e-05	0	0
CHRM2	1129	broad.mit.edu	37	7	136700449	136700449	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr7:136700449G>A	uc003vtf.1	+	4	1460	c.837G>A	c.(835-837)GAG>GAA	p.E279E	CHRM2_uc003vtg.1_Silent_p.E279E|CHRM2_uc003vtj.1_Silent_p.E279E|CHRM2_uc003vtk.1_Silent_p.E279E|CHRM2_uc003vtl.1_Silent_p.E279E|CHRM2_uc003vtm.1_Silent_p.E279E|CHRM2_uc003vti.1_Silent_p.E279E|CHRM2_uc003vto.1_Silent_p.E279E|CHRM2_uc003vtn.1_Silent_p.E279E|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	279	Cytoplasmic (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	AGGGAGAGGAGAAGGAGAGCT	0.498000													7	6					0	0	0.000157383	0	0
Unknown	0	broad.mit.edu	37	7	142499083	142499083	+	RNA	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr7:142499083C>T	uc011ksh.1	+	3		c.462C>T			uc011ksi.1_RNA|uc003vzw.1_RNA|uc010loj.1_RNA|uc003wad.2_RNA|uc003wag.1_3'UTR|uc003wbe.3_RNA|uc003wbf.3_RNA|uc003wbg.3_RNA|uc003wbh.3_Silent_p.I166I|uc003wbi.3_RNA|uc003wbj.3_RNA|uc003wbm.3_RNA|uc003wbn.3_RNA|uc010los.2_RNA					Homo sapiens mRNA for T-cell receptor beta chain, partial cds, clone:TCRVB.3.																		TCACCCAGATCGTCAGCGCCG	0.597000													14	72					0	0	0.000958276	0	0
TAS2R41	259287	broad.mit.edu	37	7	143175155	143175155	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr7:143175155G>A	uc003wdc.1	+	1	190	c.190G>A	c.(190-192)GTG>ATG	p.V64M	uc003wda.2_Intron	NM_176883	NP_795364	P59536	T2R41_HUMAN	taste receptor, type 2, member 41	64	Extracellular (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			pancreas(1)|skin(1)	2	Melanoma(164;0.15)					GGTTGGGACGGTGCACAACTT	0.572000													34	40					0	0	0.000191422	0	0
OR2A5	393046	broad.mit.edu	37	7	143747652	143747652	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr7:143747652G>A	uc011ktw.1	+	1	158	c.158G>A	c.(157-159)AGA>AAA	p.R53K		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	53	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					CTGGACTCCAGACTGCACACC	0.512000													17	24					0	0	0.000958276	0	0
CSMD1	64478	broad.mit.edu	37	8	3165304	3165304	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr8:3165304C>T	uc011kwk.1	-	25	4256	c.3866G>A	c.(3865-3867)CGA>CAA	p.R1289Q	CSMD1_uc011kwj.1_Missense_Mutation_p.R681Q|CSMD1_uc003wqe.2_Missense_Mutation_p.R445Q	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1289	Extracellular (Potential).|CUB 8.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GGACAATATTCGTCCTGATGT	0.478000													48	4					0	0	0.000781405	0	0
HMBOX1	79618	broad.mit.edu	37	8	28837649	28837649	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr8:28837649C>T	uc003xhd.3	+	4	904	c.562C>T	c.(562-564)CAA>TAA	p.Q188*	HMBOX1_uc010lvd.2_Nonsense_Mutation_p.Q188*|HMBOX1_uc003xhc.3_Nonsense_Mutation_p.Q188*|HMBOX1_uc010lve.2_RNA|HMBOX1_uc003xhe.2_Nonsense_Mutation_p.Q188*|HMBOX1_uc011lay.1_Nonsense_Mutation_p.Q188*|HMBOX1_uc003xhf.2_Nonsense_Mutation_p.Q176*|HMBOX1_uc003xhg.2_Nonsense_Mutation_p.Q176*	NM_001135726	NP_001129198	Q6NT76	HMBX1_HUMAN	homeobox containing 1	188					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Ovarian(32;0.0192)		KIRC - Kidney renal clear cell carcinoma(542;0.135)|Kidney(114;0.161)		GAGGATTTCCCAAGCAGTTGT	0.428000													150	27					0	0	0.000781405	0	0
UNC5D	137970	broad.mit.edu	37	8	35544076	35544076	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr8:35544076G>A	uc003xjr.1	+	7	1261	c.933G>A	c.(931-933)TGG>TGA	p.W311*	UNC5D_uc003xjs.1_Nonsense_Mutation_p.W306*|UNC5D_uc003xjt.1_Nonsense_Mutation_p.W80*	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	311	Extracellular (Potential).|TSP type-1 2.				apoptosis|axon guidance	integral to membrane	receptor activity	p.E311E(1)		upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		ATGGGAGCTGGGAAGTGTGGA	0.507000													34	6					0	0	0.000509022	0	0
GPR124	25960	broad.mit.edu	37	8	37690619	37690619	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr8:37690619A>C	uc003xkj.2	+	9	1552	c.1189A>C	c.(1189-1191)ACC>CCC	p.T397P	GPR124_uc010lvy.2_Missense_Mutation_p.T397P	NM_032777	NP_116166	Q96PE1	GP124_HUMAN	G protein-coupled receptor 124 precursor	397	Extracellular (Potential).				central nervous system development|endothelial cell migration|neuropeptide signaling pathway|regulation of angiogenesis|regulation of chemotaxis|sprouting angiogenesis	integral to membrane|plasma membrane	G-protein coupled receptor activity			large_intestine(2)|ovary(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)			TGCCCCGGGCACCCGAGCCTC	0.677000													7	22					0	0	0.000219431	0	0
ANK1	286	broad.mit.edu	37	8	41554043	41554043	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr8:41554043C>T	uc003xok.2	-	26	2882	c.2798G>A	c.(2797-2799)GGC>GAC	p.G933D	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Missense_Mutation_p.G249D|ANK1_uc003xoi.2_Missense_Mutation_p.G933D|ANK1_uc003xoj.2_Missense_Mutation_p.G933D|ANK1_uc003xol.2_Missense_Mutation_p.G933D|ANK1_uc003xom.2_Missense_Mutation_p.G974D	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	933	ZU5.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			CACTCGCAGGCCGTTGTGGCG	0.662000													13	2					0	0	0.000308642	0	0
LYN	4067	broad.mit.edu	37	8	56864528	56864528	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr8:56864528G>C	uc003xsk.3	+	7	773	c.491G>C	c.(490-492)AGC>ACC	p.S164T	LYN_uc003xsl.3_Missense_Mutation_p.S143T	NM_002350	NP_002341	P07948	LYN_HUMAN	Yamaguchi sarcoma viral (v-yes-1) oncogene	164	SH2.				erythrocyte differentiation|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of cellular component movement|positive regulation of stress-activated protein kinase signaling cascade|positive regulation of tyrosine phosphorylation of STAT protein|response to DNA damage stimulus|T cell costimulation	cytosol|Golgi apparatus|membrane raft|nucleus|perinuclear region of cytoplasm	ATP binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|receptor signaling protein tyrosine kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_lung(136;0.0555)|Lung NSC(129;0.0726)|all_epithelial(80;0.0772)	Epithelial(17;0.000834)|all cancers(17;0.00598)			CCCATAGGAAGCTTCTCTCTG	0.373000													74	15					0	0	0.000781405	0	0
SDR16C5	195814	broad.mit.edu	37	8	57224797	57224797	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr8:57224797G>A	uc003xsy.1	-	3	1022	c.384C>T	c.(382-384)ATC>ATT	p.I128I	SDR16C5_uc010lyk.1_Silent_p.I128I|SDR16C5_uc010lyl.1_Intron	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	128					detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TGCCTGTTACGATTCCGGCAT	0.378000													72	12					0	0	0.000781405	0	0
CHD7	55636	broad.mit.edu	37	8	61765709	61765709	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr8:61765709C>T	uc003xue.2	+	31	6902	c.6425C>T	c.(6424-6426)TCC>TTC	p.S2142F		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2142					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			AATACATCTTCCTTGAACCCA	0.463000													28	2					0	0	0.000279167	0	0
VPS13B	157680	broad.mit.edu	37	8	100866132	100866132	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr8:100866132G>A	uc003yiv.2	+	56	10701	c.10590G>A	c.(10588-10590)CGG>CGA	p.R3530R	VPS13B_uc003yiw.2_Silent_p.R3505R	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	3530					protein transport			p.R3530W(1)		ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			AACCTGCTCGGTTATACGTGG	0.413000													104	11					0	0	0.000781405	0	0
ADCY8	114	broad.mit.edu	37	8	131812710	131812710	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr8:131812710G>A	uc003ytd.3	-	15	3278	c.3022C>T	c.(3022-3024)CTG>TTG	p.L1008L	ADCY8_uc010mds.2_Silent_p.L877L	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	1008	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			AGCAAGCGCAGGCATTCCACT	0.443000										HNSCC(32;0.087)			86	14					0	0	0.000781405	0	0
ADCY8	114	broad.mit.edu	37	8	131861907	131861908	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr8:131861907_131861908GG>AA	uc003ytd.3	-	10	2608_2609	c.2352_2353CC>TT	c.(2350-2355)GCCCGG>GCTTGG	p.R785W	ADCY8_uc010mds.2_Intron	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	785					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			ATGACGTTCCGGGCCAAATAGG	0.465000										HNSCC(32;0.087)			23	3					0	0	6.4e-05	0	0
FAM135B	51059	broad.mit.edu	37	8	139165247	139165247	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr8:139165247G>A	uc003yuy.2	-	13	1642	c.1471C>T	c.(1471-1473)CAT>TAT	p.H491Y	FAM135B_uc003yux.2_Missense_Mutation_p.H392Y|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.H53Y|FAM135B_uc003yvb.2_Missense_Mutation_p.H53Y	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	491										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			ATGTCCATATGATTTTGTGTG	0.418000										HNSCC(54;0.14)			28	5					0	0	0.000781405	0	0
ZNF251	90987	broad.mit.edu	37	8	145947433	145947433	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr8:145947433G>A	uc003zdv.3	-	5	1868	c.1612C>T	c.(1612-1614)CCC>TCC	p.P538S		NM_138367	NP_612376	Q9BRH9	ZN251_HUMAN	zinc finger protein 251	538					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;7.54e-38)|all cancers(56;6.19e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.198)		TCTCCAGTGGGAATCTGTCCA	0.483000													90	15					0	0	0.000781405	0	0
KCNV2	169522	broad.mit.edu	37	9	2718835	2718835	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr9:2718835G>A	uc003zho.1	+	1	1310	c.1096G>A	c.(1096-1098)GTG>ATG	p.V366M		NM_133497	NP_598004	Q8TDN2	KCNV2_HUMAN	potassium channel, subfamily V, member 2	366	Extracellular (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(50;0.0257)		CGGCCAGACGGTGGGCAGCGT	0.672000													18	2					0	0	0.000229342	0	0
UBAP2	55833	broad.mit.edu	37	9	33922684	33922684	+	Splice_Site	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr9:33922684C>T	uc003ztq.1	-	28	3377	c.3264_splice	c.e28+1	p.Q1088_splice	UBAP2_uc011loc.1_Splice_Site_p.Q997_splice|UBAP2_uc011lod.1_Splice_Site_p.Q821_splice|UBAP2_uc011loe.1_Splice_Site_p.Q843_splice|UBAP2_uc003ztn.1_Splice_Site_p.Q327_splice|UBAP2_uc003zto.1_Splice_Site_p.Q327_splice|UBAP2_uc003ztp.1_Splice_Site_p.Q327_splice	NM_018449	NP_060919	Q5T6F2	UBAP2_HUMAN	ubiquitin associated protein 2											ovary(3)	3			LUSC - Lung squamous cell carcinoma(29;0.00575)	GBM - Glioblastoma multiforme(74;0.168)		ACTGTACTCACCTGTGCATCC	0.622000													11	2					0	0	6.40141e-05	0	0
Unknown	0	broad.mit.edu	37	9	38586238	38586238	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr9:38586238C>T	uc004abf.1	-	4	1253	c.1220G>A	c.(1219-1221)GGA>GAA	p.G407E	uc004abg.3_Missense_Mutation_p.G730E					RecName: Full=Ankyrin repeat domain-containing protein 18B;																		ATTTAAGTCTCCATGGCAACT	0.259000													16	0					0	0	0.000175454	0	0
GNA14	9630	broad.mit.edu	37	9	80043925	80043925	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr9:80043925C>T	uc004aku.2	-	5	1144	c.621G>A	c.(619-621)TCG>TCA	p.S207S		NM_004297	NP_004288	O95837	GNA14_HUMAN	G alpha 14	207					activation of phospholipase C activity by dopamine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation	heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			ovary(2)	2						TCCGTCTTTCCGATCGTTGGC	0.453000													62	88					0	0	0.000781405	0	0
ANKS6	203286	broad.mit.edu	37	9	101536204	101536204	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr9:101536204C>T	uc004ayu.2	-	9	1797	c.1776G>A	c.(1774-1776)CAG>CAA	p.Q592Q	ANKS6_uc004ayt.2_Silent_p.Q291Q|ANKS6_uc004ayv.1_Silent_p.Q54Q|ANKS6_uc004ayw.1_Silent_p.Q174Q|ANKS6_uc004ayx.1_RNA|ANKS6_uc004ayy.1_RNA	NM_173551	NP_775822	Q68DC2	ANKS6_HUMAN	ankyrin repeat and sterile alpha motif domain	592										ovary(2)	2		Acute lymphoblastic leukemia(62;0.0527)				TGCTGGCTCTCTGGGGCAGCG	0.597000													12	16					0	0	0.000219431	0	0
OR13F1	138805	broad.mit.edu	37	9	107266590	107266590	+	Missense_Mutation	SNP	G	A	A	rs138844331		TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr9:107266590G>A	uc011lvm.1	+	1	47	c.47G>A	c.(46-48)GGA>GAA	p.G16E		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.G16V(1)|p.G16E(1)		large_intestine(1)|ovary(1)|skin(1)	3						TTCTTCCTGGGATTTTTTCAC	0.403000													17	38					0	0	0.00074312	0	0
TLR4	7099	broad.mit.edu	37	9	120475528	120475528	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr9:120475528C>T	uc004bjz.2	+	3	1413	c.1122C>T	c.(1120-1122)AGC>AGT	p.S374S	TLR4_uc004bka.2_Silent_p.S334S|TLR4_uc004bkb.2_Silent_p.S174S	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	374	LRR 11.|Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						ATCTACCAAGCCTTGAGTTTC	0.388000													8	9					0	0	0.000274275	0	0
GOLGA1	2800	broad.mit.edu	37	9	127700878	127700878	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr9:127700878C>T	uc004bpc.2	-	3	455	c.113G>A	c.(112-114)GGA>GAA	p.G38E	GOLGA1_uc010mwt.1_Missense_Mutation_p.G38E	NM_002077	NP_002068	Q92805	GOGA1_HUMAN	golgin 97	38						Golgi cisterna membrane				ovary(1)	1						TGAGTCAGCTCCCATTGAGGC	0.403000													23	29					0	0	0.00047179	0	0
NUP214	8021	broad.mit.edu	37	9	134016001	134016001	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr9:134016001C>T	uc004cag.2	+	11	1309	c.1198C>T	c.(1198-1200)CCA>TCA	p.P400S	NUP214_uc004cah.2_Missense_Mutation_p.P400S|NUP214_uc004caf.1_Missense_Mutation_p.P400S	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	400					carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		TGTGCTTTGTCCATTTTATAT	0.383000			T	DEK|SET|ABL1	AML|T-ALL								39	59					0	0	0.000319135	0	0
TLR7	51284	broad.mit.edu	37	X	12905811	12905811	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chrX:12905811G>A	uc004cvc.2	+	3	2323	c.2184G>A	c.(2182-2184)CTG>CTA	p.L728L		NM_016562	NP_057646	Q9NYK1	TLR7_HUMAN	toll-like receptor 7 precursor	728	LRR 25.|Extracellular (Potential).				cellular response to mechanical stimulus|defense response to virus|I-kappaB phosphorylation|inflammatory response|innate immune response|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus	early phagosome|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosome|plasma membrane	double-stranded RNA binding|single-stranded RNA binding|siRNA binding|transmembrane receptor activity			ovary(2)|lung(2)|breast(1)	5					Imiquimod(DB00724)	TCAAGAATCTGATTCTTAAGA	0.418000													41	56					0	0	0.000781405	0	0
BMX	660	broad.mit.edu	37	X	15540570	15540570	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chrX:15540570C>T	uc004cww.2	+	7	800	c.612C>T	c.(610-612)TCC>TCT	p.S204S	BMX_uc004cwx.3_Silent_p.S204S|BMX_uc004cwy.3_Silent_p.S204S	NM_203281	NP_975010	P51813	BMX_HUMAN	BMX non-receptor tyrosine kinase	204					cellular component disassembly involved in apoptosis|intracellular signal transduction|mesoderm development	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding|signal transducer activity			lung(3)|ovary(2)	5	Hepatocellular(33;0.183)					ACTATGGCTCCCAGCCACCAT	0.443000													28	27					0	0	0.000184323	0	0
SCML2	10389	broad.mit.edu	37	X	18276320	18276320	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chrX:18276320G>A	uc004cyl.2	-	10	1274	c.1117C>T	c.(1117-1119)CCC>TCC	p.P373S	SCML2_uc004cyk.3_RNA|SCML2_uc010nfd.1_Missense_Mutation_p.P373S|SCML2_uc011miz.1_Missense_Mutation_p.P307S|SCML2_uc010nfc.2_Missense_Mutation_p.P109S	NM_006089	NP_006080	Q9UQR0	SCML2_HUMAN	sex comb on midleg-like 2	373					anatomical structure morphogenesis	PcG protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0	Hepatocellular(33;0.183)					ATTCTCTTGGGATCCAGATGA	0.478000													21	44					0	0	0.000375601	0	0
DCAF8L2	347442	broad.mit.edu	37	X	27765849	27765849	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chrX:27765849C>T	uc011mjy.1	+	1	924	c.837C>T	c.(835-837)TTC>TTT	p.F279F		NM_001136533	NP_001130005			DDB1 and CUL4 associated factor 8-like 2											central_nervous_system(1)|pancreas(1)	2						AGGCCAAGTTCCTTCCTAACT	0.478000													10	11					0	0	0.000673444	0	0
MAGEB10	139422	broad.mit.edu	37	X	27840402	27840402	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chrX:27840402C>T	uc004dbw.2	+	3	1206	c.979C>T	c.(979-981)CGC>TGC	p.R327C		NM_182506	NP_872312	Q96LZ2	MAGBA_HUMAN	melanoma antigen family B, 10	327										lung(1)|breast(1)|central_nervous_system(1)	3						AGCCAAGGCTCGCGTTAGTGC	0.483000													11	16					0	0	0.000219431	0	0
SYTL5	94122	broad.mit.edu	37	X	37979716	37979716	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chrX:37979716C>A	uc004ddu.2	+	15	2236	c.1702C>A	c.(1702-1704)CAA>AAA	p.Q568K	SYTL5_uc004ddv.2_Missense_Mutation_p.Q568K|SYTL5_uc004ddx.2_Missense_Mutation_p.Q590K	NM_001163335	NP_001156807	Q8TDW5	SYTL5_HUMAN	synaptotagmin-like 5 isoform 1	568					intracellular protein transport	membrane	metal ion binding|Rab GTPase binding			skin(1)	1						AGAACAACTCCAAGGTAGAGT	0.398000													7	63					0.000442599	0.00559229	0.000442599	1	0
DDX3X	1654	broad.mit.edu	37	X	41206955	41206955	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chrX:41206955G>T	uc004dfe.2	+	17	2827	c.1972G>T	c.(1972-1974)GAC>TAC	p.D658Y	DDX3X_uc004dff.2_Missense_Mutation_p.D657Y|DDX3X_uc011mkq.1_Missense_Mutation_p.D642Y|DDX3X_uc011mkr.1_Missense_Mutation_p.D528Y|DDX3X_uc011mks.1_Missense_Mutation_p.D135Y|DDX3X_uc004dfg.2_RNA	NM_001356	NP_001347	O00571	DDX3X_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3	658	Gly/Ser-rich.				interspecies interaction between organisms	cytoplasm|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding|RNA binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6						CCAGGGGGTTGACTGGTGGGG	0.428000										HNSCC(61;0.18)			29	51					3.67414e-24	4.88736e-23	0.000409698	1	0
MAGIX	79917	broad.mit.edu	37	X	49021239	49021239	+	Silent	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chrX:49021239G>A	uc010nin.1	+	4	365	c.318G>A	c.(316-318)TTG>TTA	p.L106L	MAGIX_uc010nio.1_Intron|MAGIX_uc004dmt.2_Intron|MAGIX_uc004dmu.2_Silent_p.L47L|MAGIX_uc004dmw.2_Intron	NM_024859	NP_079135	Q9H6Y5	MAGIX_HUMAN	MAGI family member, X-linked isoform a	106											0						CTCCCCAATTGATCCAGGGTA	0.542000													48	75					0	0	0.000781405	0	0
HUWE1	10075	broad.mit.edu	37	X	53576138	53576139	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chrX:53576138_53576139GT>AA	uc004dsp.2	-	67	10218_10219	c.9816_9817AC>TT	c.(9814-9819)CTACAC>CTTTAC	p.H3273Y	HUWE1_uc004dsn.2_Missense_Mutation_p.H2081Y	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	3273					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						TCCATCTTGTGTAGCAGGTCCA	0.500000													45	40					0	0	6.4e-05	0	0
PAGE2	203569	broad.mit.edu	37	X	55116953	55116953	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chrX:55116953G>A	uc004duf.1	+	3	157	c.103G>A	c.(103-105)GAA>AAA	p.E35K		NM_207339	NP_997222	Q7Z2X7	GGEE2_HUMAN	P antigen family, member 2	35										ovary(2)	2						GCCCACTGAGGAAAAACGTCA	0.418000													18	14					0	0	0.000229342	0	0
ZMAT1	84460	broad.mit.edu	37	X	101139401	101139401	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chrX:101139401G>A	uc004eim.2	-	2	3983	c.485C>T	c.(484-486)TCT>TTT	p.S162F	ZMAT1_uc011mrl.1_Missense_Mutation_p.S333F|ZMAT1_uc004ein.2_Missense_Mutation_p.S162F|ZMAT1_uc011mrm.1_Missense_Mutation_p.S162F	NM_032441	NP_115817	Q5H9K5	ZMAT1_HUMAN	zinc finger, matrin type 1 isoform 3	162						nucleus	zinc ion binding			ovary(1)	1						AGTATCCACAGAGTTCTCTCT	0.413000													20	8					0	0	0.000295444	0	0
SERPINA7	6906	broad.mit.edu	37	X	105277518	105277518	+	Silent	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chrX:105277518C>T	uc004eme.1	-	4	1237	c.1221G>A	c.(1219-1221)GGG>GGA	p.G407G	SERPINA7_uc010npd.2_Silent_p.G407G	NM_000354	NP_000345	P05543	THBG_HUMAN	serine (or cysteine) proteinase inhibitor, clade	407					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity				0					Levothyroxine(DB00451)|Liothyronine(DB00279)	TCACAACTTTCCCTAGAAAGA	0.388000													54	7					0	0	0.000781405	0	0
ENOX2	10495	broad.mit.edu	37	X	129804005	129804005	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chrX:129804005G>A	uc004evw.2	-	8	1133	c.715C>T	c.(715-717)CCA>TCA	p.P239S	ENOX2_uc004evx.2_Missense_Mutation_p.P210S|ENOX2_uc004evy.2_Missense_Mutation_p.P210S|ENOX2_uc004evv.2_Missense_Mutation_p.P66S	NM_182314	NP_872114	Q16206	ENOX2_HUMAN	ecto-NOX disulfide-thiol exchanger 2 isoform b	239					cell growth|electron transport chain|regulation of growth|transport|ultradian rhythm	cytosol|external side of plasma membrane|extracellular space	nucleic acid binding|nucleotide binding|protein disulfide oxidoreductase activity			ovary(1)	1						GGTGGAGATGGTGGACGCAAT	0.453000													22	35					0	0	0.000586117	0	0
USP26	83844	broad.mit.edu	37	X	132160163	132160163	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chrX:132160163G>A	uc010nrm.1	-	6	2556	c.2086C>T	c.(2086-2088)CCA>TCA	p.P696S	USP26_uc011mvf.1_Missense_Mutation_p.P696S	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	696					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					TTTCGTTTTGGATTTTCGGGC	0.383000													18	26					0	0	0.00074312	0	0
FAM127B	26071	broad.mit.edu	37	X	134186036	134186036	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chrX:134186036C>T	uc004eyf.2	-	1	186	c.103G>A	c.(103-105)GGA>AGA	p.G35R	FAM127B_uc004eyg.3_Missense_Mutation_p.G35R	NM_001078172	NP_001071640	Q9BWD3	F127B_HUMAN	family with sequence similarity 127, member B	35											0	Acute lymphoblastic leukemia(192;0.000127)					TCGGTATCTCCGTCAAACGTC	0.642000													25	40					0	0	0.000279167	0	0
GABRQ	55879	broad.mit.edu	37	X	151818324	151818324	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chrX:151818324G>A	uc004ffp.1	+	6	750	c.730G>A	c.(730-732)GAG>AAG	p.E244K		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	244	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TACTAGCAAGGAGGTGTATTT	0.498000													32	45					0	0	0.000228196	0	0
GPR88	54112	broad.mit.edu	37	1	101004950	101004950	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:101004950delC	uc001dth.2	+	2	832	c.428delC	c.(427-429)ACCfs	p.T143fs		NM_022049	NP_071332	Q9GZN0	GPR88_HUMAN	G-protein coupled receptor 88	143	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_epithelial(167;1.19e-05)|all_lung(203;0.00159)|Lung NSC(277;0.00171)		Epithelial(280;0.0372)|all cancers(265;0.0558)|COAD - Colon adenocarcinoma(174;0.141)|Colorectal(144;0.156)|Lung(183;0.189)		CTGCTCATCACCCGGGCGCCC	0.721													2	4	---	---	---	---					
RIT1	6016	broad.mit.edu	37	1	155870237	155870237	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr1:155870237delT	uc001fmh.1	-	6	789	c.602delA	c.(601-603)AACfs	p.N201fs	RIT1_uc010pgr.1_Frame_Shift_Del_p.N165fs	NM_006912	NP_008843	Q92963	RIT1_HUMAN	Ras-like without CAAX 1	201					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			breast(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;1.79e-05)			CCATACACTGTTTTTGGGCTT	0.413													7	751	---	---	---	---					
BAZ2A	11176	broad.mit.edu	37	12	57005698	57005698	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr12:57005698delA	uc001slq.1	-	6	1668	c.1474delT	c.(1474-1476)TCCfs	p.S492fs	BAZ2A_uc001slp.1_Frame_Shift_Del_p.S490fs|BAZ2A_uc009zow.1_Frame_Shift_Del_p.S460fs	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A	492					chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|zinc ion binding				0						GCTTTTGGGGATGTCACTGAA	0.537													10	9	---	---	---	---					
CHD8	57680	broad.mit.edu	37	14	21884031	21884031	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr14:21884031delT	uc001was.1	-	6	1009	c.915delA	c.(913-915)AAAfs	p.K305fs	CHD8_uc001war.1_Frame_Shift_Del_p.K201fs	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	584					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		CCTCTGTATATTTTTTTCGCT	0.398													7	302	---	---	---	---					
BLM	641	broad.mit.edu	37	15	91293015	91293015	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr15:91293015delC	uc002bpr.2	+	3	614	c.517delC	c.(517-519)CCCfs	p.P173fs	BLM_uc010uqh.1_Frame_Shift_Del_p.P173fs|BLM_uc010uqi.1_5'UTR|BLM_uc010bnx.2_Frame_Shift_Del_p.P173fs	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	173					double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			TGTTACACCACCCCAAAGTCA	0.343			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				7	530	---	---	---	---					
MYBBP1A	10514	broad.mit.edu	37	17	4453361	4453362	+	In_Frame_Ins	INS	-	GAT	GAT			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr17:4453361_4453362insGAT	uc002fyb.3	-	9	1372_1373	c.1310_1311insATC	c.(1309-1311)TCG>TCATCG	p.437_437S>SS	MYBBP1A_uc002fxz.3_In_Frame_Ins_p.437_437S>SS	NM_014520	NP_055335	Q9BQG0	MBB1A_HUMAN	MYB binding protein 1a isoform 2	437	Interaction with MYB (By similarity).				nucleocytoplasmic transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NLS-dependent protein nuclear import complex|nucleolus	DNA binding|DNA-directed DNA polymerase activity|transcription factor binding			ovary(1)|skin(1)	2						ACATGTGGAGCGATGAATCCTG	0.589													36	86	---	---	---	---					
MEGF8	1954	broad.mit.edu	37	19	42862308	42862309	+	Frame_Shift_Ins	INS	-	CT	CT			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr19:42862308_42862309insCT	uc002otl.3	+	28	5458_5459	c.4823_4824insCT	c.(4822-4824)CACfs	p.H1608fs	MEGF8_uc002otm.3_Frame_Shift_Ins_p.H1216fs	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	1675	Extracellular (Potential).|Kelch 9.					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				CTCTATGGTCACTCTGCTGTCT	0.653													2	4	---	---	---	---					
ZNF841	284371	broad.mit.edu	37	19	52569243	52569243	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr19:52569243delC	uc002pyl.1	-	5	2096	c.1544delG	c.(1543-1545)GGCfs	p.G515fs	ZNF841_uc010ydh.1_Frame_Shift_Del_p.G631fs|ZNF841_uc010epk.1_Intron	NM_001136499	NP_001129971	Q6ZN19	ZN841_HUMAN	zinc finger protein 841	515	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAAGACCTTGCCGCATTCGTT	0.423													44	131	---	---	---	---					
SLC4A10	57282	broad.mit.edu	37	2	162807241	162807241	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr2:162807241delA	uc002ubx.3	+	19	2608	c.2424delA	c.(2422-2424)CCAfs	p.P808fs	SLC4A10_uc002uby.3_Frame_Shift_Del_p.P778fs|SLC4A10_uc010zcs.1_Frame_Shift_Del_p.P789fs	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	808	Extracellular (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						CTTTAGGTCCAAACCCATGGT	0.388													2	4	---	---	---	---					
FAM116B	414918	broad.mit.edu	37	22	50754836	50754836	+	Frame_Shift_Del	DEL	G	-	-	rs146906468	by1000genomes	TCGA-BF-A1PZ-01A-11D-A19A-08	TCGA-BF-A1PZ-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ef799ed-a9fa-4328-95d3-265699e16339	a8458b1d-3040-455b-ae7a-b1ac22b9f2b6	g.chr22:50754836delG	uc011aru.1	-	7	594	c.522delC	c.(520-522)CCCfs	p.P174fs	FAM116B_uc011arv.1_Frame_Shift_Del_p.P174fs	NM_001001794	NP_001001794	Q8NEG7	F116B_HUMAN	family with sequence similarity 116, member B	174											0		all_cancers(38;4.34e-09)|all_epithelial(38;3.03e-08)|all_lung(38;0.00141)|Breast(42;0.00387)|Lung NSC(38;0.0199)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CAAAGTACTCGGGGGCGATGA	0.637													2	4	---	---	---	---					
