Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
RPA2	6118	broad.mit.edu	37	1	28233446	28233446	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr1:28233446T>C	uc001bpe.1	-	4	608	c.326A>G	c.(325-327)GAC>GGC	p.D109G	RPA2_uc001bpd.1_Missense_Mutation_p.D117G|RPA2_uc010ofp.1_Missense_Mutation_p.D13G	NM_002946	NP_002937	P15927	RFA2_HUMAN	replication protein A2, 32kDa	109	Asp/Glu-rich (acidic).				cell cycle checkpoint|DNA recombinase assembly|DNA strand elongation involved in DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA gap filling|regulation of double-strand break repair via homologous recombination|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	DNA replication factor A complex|PML body	protein phosphatase binding|single-stranded DNA binding			skin(1)	1		Colorectal(325;0.000147)|Renal(390;0.00357)|Lung NSC(340;0.00588)|all_lung(284;0.00645)|Breast(348;0.0174)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0545)|all_neural(195;0.0557)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0429)|OV - Ovarian serous cystadenocarcinoma(117;3.62e-24)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;1.75e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00294)|STAD - Stomach adenocarcinoma(196;0.00308)|BRCA - Breast invasive adenocarcinoma(304;0.00613)|READ - Rectum adenocarcinoma(331;0.0649)		TACATCTGTGTCAACCCACTG	0.393000								Direct_reversal_of_damage|NER					4	26					0	0	0.000248	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47325354	47325354	+	RNA	SNP	G	A	A	rs4660360	by1000genomes	TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr1:47325354G>A	uc001cqo.1	-	9		c.1214C>T				NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						CATCTGGAAAGGTAATGGGTT	0.438000													7	66					0	0	0.000673	0	0
USP24	23358	broad.mit.edu	37	1	55589156	55589156	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr1:55589156G>C	uc001cyg.3	-	33	3760	c.3760C>G	c.(3760-3762)CTT>GTT	p.L1254V		NM_015306	NP_056121	Q9UPU5	UBP24_HUMAN	ubiquitin specific protease 24	1414					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(6)|kidney(6)|breast(1)	13						CACGTAACAAGAAGAGACAAA	0.493000													2	8					0	0	0.004672	0	0
FLG2	388698	broad.mit.edu	37	1	152325088	152325088	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr1:152325088C>T	uc001ezw.3	-	3	5247	c.5174G>A	c.(5173-5175)GGA>GAA	p.G1725E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1725							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTGGCCAGATCCCCTTCTTCC	0.498000													55	154					0	0	0.003610	0	0
CASQ1	844	broad.mit.edu	37	1	160165743	160165743	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr1:160165743G>C	uc010pja.1	+	6	965	c.708G>C	c.(706-708)ATG>ATC	p.M236I		NM_001231	NP_001222	P31415	CASQ1_HUMAN	calsequestrin 1	236						mitochondrial matrix|sarcoplasmic reticulum lumen|smooth endoplasmic reticulum	calcium ion binding			central_nervous_system(1)	1	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			AGGCCTTCATGGAAGAGCCTG	0.557000													3	65					0	0	0.000248	0	0
RPL13AP6	644511	broad.mit.edu	37	10	112696573	112696573	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr10:112696573T>C	uc010qrh.1	-	1	441	c.419A>G	c.(418-420)CAC>CGC	p.H140R	SHOC2_uc001kzl.3_Intron|SHOC2_uc009xxx.2_Intron|SHOC2_uc010qrg.1_Intron	NR_026715				SubName: Full=cDNA FLJ51256, highly similar to 60S ribosomal protein L13a;												0						GTGAGCCAGGTGCCCCAGATA	0.537000													2	0					0	0	0.004672	0	0
LOC653544	653544	broad.mit.edu	37	10	135491123	135491123	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr10:135491123G>A	uc010qvi.1	+	1	845	c.734G>A	c.(733-735)GGC>GAC	p.G245D		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	245						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCCCACACCGGCGCGTGGGGA	0.786000													4	42					0	0	0.001168	0	0
MALAT1	378938	broad.mit.edu	37	11	65265689	65265689	+	RNA	SNP	A	T	T	rs137885794	by1000genomes	TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr11:65265689A>T	uc010roh.1	+	1		c.457A>T				NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						CCATTCGCTTAGTTGGTCTAC	0.488000													10	23					0	0	0.000673	0	0
PDE2A	5138	broad.mit.edu	37	11	72293497	72293497	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr11:72293497G>C	uc010rrc.1	-	21	2085	c.1842C>G	c.(1840-1842)GAC>GAG	p.D614E	PDE2A_uc001oso.2_Missense_Mutation_p.D593E|PDE2A_uc010rra.1_Missense_Mutation_p.D607E|PDE2A_uc001osn.2_Missense_Mutation_p.D358E|PDE2A_uc010rrb.1_Missense_Mutation_p.D605E|PDE2A_uc010rrd.1_Missense_Mutation_p.D499E	NM_002599	NP_002590	O00408	PDE2A_HUMAN	phosphodiesterase 2A isoform 1	614					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(2)|breast(1)|skin(1)	4			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	CCATGGACGTGTCATCCTCGG	0.512000													31	129					0	0	0.002096	0	0
WBP11	51729	broad.mit.edu	37	12	14947999	14947999	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr12:14947999C>T	uc001rci.2	-	6	588	c.427G>A	c.(427-429)GAT>AAT	p.D143N		NM_016312	NP_057396	Q9Y2W2	WBP11_HUMAN	WW domain binding protein 11	143	Pro-rich.				mRNA processing|RNA splicing|rRNA processing	cytoplasm	single-stranded DNA binding|WW domain binding			ovary(1)|lung(1)	2						TGTGGCATATCTGGCAAAGGA	0.428000													19	220					0	0	0.006122	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21205150	21205150	+	Silent	SNP	T	G	G			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr12:21205150T>G	uc010sin.1	+	9	1311	c.1311T>G	c.(1309-1311)CCT>CCG	p.P437P	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Silent_p.P484P	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	437						membrane	transporter activity				0						ACCTGTCACCTTGTCTAGCAG	0.373000													8	212					0	0	0.004482	0	0
TSPAN11	441631	broad.mit.edu	37	12	31144797	31144797	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr12:31144797G>T	uc010sju.1	+	8	1089	c.709G>T	c.(709-711)GGG>TGG	p.G237W	TSPAN11_uc001rjp.2_Missense_Mutation_p.G237W|TSPAN11_uc010sjv.1_Missense_Mutation_p.G227W	NM_001080509	NP_001073978	A1L157	TSN11_HUMAN	tetraspanin 11	237	Helical; (Potential).					integral to membrane					0	all_lung(12;3.11e-10)|Lung NSC(12;5.24e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					GCAGATCTGCGGGATGGTTCT	0.562000													5	111					3.59834e-05	0.000316795	0.001168	1	0
B4GALNT1	2583	broad.mit.edu	37	12	58022613	58022613	+	Silent	SNP	G	C	C			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr12:58022613G>C	uc001spg.1	-	8	1317	c.885C>G	c.(883-885)CTC>CTG	p.L295L	B4GALNT1_uc010sru.1_Silent_p.L240L|B4GALNT1_uc010srv.1_Silent_p.L262L	NM_001478	NP_001469	Q00973	B4GN1_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 1	295	Lumenal (Potential).				lipid glycosylation	integral to Golgi membrane|membrane fraction	(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase activity				0	Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.109)			TACTGGTGATGAGAGCCCGTA	0.577000													29	162					0	0	0.007291	0	0
CHFR	55743	broad.mit.edu	37	12	133433062	133433062	+	Silent	SNP	T	C	C			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr12:133433062T>C	uc001ulf.2	-	10	1341	c.1257A>G	c.(1255-1257)TCA>TCG	p.S419S	CHFR_uc001ulc.1_RNA|CHFR_uc001ule.2_Silent_p.S407S|CHFR_uc010tbs.1_Silent_p.S419S|CHFR_uc001uld.2_Silent_p.S378S|CHFR_uc010tbt.1_Silent_p.S327S	NM_001161344	NP_001154816	Q96EP1	CHFR_HUMAN	checkpoint with forkhead and ring finger domains	419					cell division|mitosis|mitotic cell cycle checkpoint|modification-dependent protein catabolic process|protein polyubiquitination	PML body	nucleotide binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(1)	1	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.00552)|all_epithelial(31;0.226)		OV - Ovarian serous cystadenocarcinoma(86;2.59e-08)|Epithelial(86;6.38e-07)|all cancers(50;1.56e-05)		ACCTAATGTCTGAGGACTCAC	0.542000													3	73					0	0	0.004672	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	T	T			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr13:115047559C>T	uc001vup.2	+	2	308	c.271C>T	c.(271-273)CTG>TTG	p.L91L	UPF3A_uc010tkn.1_Silent_p.L91L|UPF3A_uc001vuq.2_Silent_p.L91L|UPF3A_uc001vus.2_RNA|UPF3A_uc001vur.2_RNA	NM_023011	NP_075387	Q9H1J1	REN3A_HUMAN	UPF3 regulator of nonsense transcripts homolog A	91	Required for interaction with UPF2.				mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation	cytoplasm|nucleus|plasma membrane	nucleocytoplasmic transporter activity|nucleotide binding|protein binding|RNA binding			skin(1)	1	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0191)|all_epithelial(44;0.00716)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.238)	BRCA - Breast invasive adenocarcinoma(86;0.0886)	OV - Ovarian serous cystadenocarcinoma(48;0.195)|Epithelial(10;0.2)		GCTGCGCCCGCTGCCAGCACA	0.731000													5	5					0	0	0.000602	0	0
PCNX	22990	broad.mit.edu	37	14	71572021	71572021	+	Silent	SNP	G	T	T			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr14:71572021G>T	uc001xmo.2	+	33	6611	c.6165G>T	c.(6163-6165)GGG>GGT	p.G2055G	PCNX_uc010are.1_Silent_p.G1944G|PCNX_uc010arf.1_Silent_p.G843G|PCNX_uc001xmp.2_Silent_p.G139G	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	2055						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		CTGGAGGTGGGACTTCCTGCA	0.493000													23	17					4.54149e-19	4.43288e-18	0.002299	1	0
GAS2L2	246176	broad.mit.edu	37	17	34077157	34077157	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr17:34077157T>G	uc002hjv.1	-	2	594	c.566A>C	c.(565-567)GAC>GCC	p.D189A		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	189					cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CGGCGAGGGGTCGGGCGGGGG	0.741000													7	38					0	0	0.006214	0	0
KRT23	25984	broad.mit.edu	37	17	39092616	39092616	+	Silent	SNP	G	A	A			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr17:39092616G>A	uc002hvm.1	-	2	829	c.240C>T	c.(238-240)AAC>AAT	p.N80N	KRT23_uc010wfl.1_Intron|KRT23_uc010cxf.1_Intron|KRT23_uc010cxg.2_Silent_p.N80N|KRT23_uc002hvn.1_Silent_p.N80N	NM_015515	NP_056330	Q9C075	K1C23_HUMAN	keratin 23	80	Rod.|Coil 1A.					intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)|Ovarian(249;0.15)				CCAGGCGGTCGTTGAGATTCT	0.612000													43	63					0	0	0.003610	0	0
KRTAP1-3	81850	broad.mit.edu	37	17	39191032	39191032	+	Silent	SNP	G	A	A			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr17:39191032G>A	uc002hvv.2	-	1	76	c.42C>T	c.(40-42)TGC>TGT	p.C14C		NM_030966	NP_112228	Q8IUG1	KRA13_HUMAN	keratin associated protein 1-3	14						extracellular region|keratin filament	structural constituent of epidermis				0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			CACTGGTGGAGCAGCTGGGAT	0.577000													14	55					0	0	0.001855	0	0
ALPK2	115701	broad.mit.edu	37	18	56202520	56202520	+	Silent	SNP	C	T	T			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr18:56202520C>T	uc002lhj.3	-	5	5113	c.4899G>A	c.(4897-4899)GAG>GAA	p.E1633E	ALPK2_uc002lhk.1_Silent_p.E964E	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1633							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TTTGAAGCACCTCTATTTTAG	0.448000													28	43					0	0	0.004656	0	0
EIF3G	8666	broad.mit.edu	37	19	10226237	10226237	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr19:10226237G>A	uc002mnd.2	-	10	929	c.865C>T	c.(865-867)CGC>TGC	p.R289C		NM_003755	NP_003746	O75821	EIF3G_HUMAN	eukaryotic translation initiation factor 3,	289	RRM.					cytosol|eukaryotic translation initiation factor 3 complex|nucleus|perinuclear region of cytoplasm	nucleotide binding|protein binding|translation initiation factor activity				0			OV - Ovarian serous cystadenocarcinoma(20;3.53e-09)|Epithelial(33;4.91e-06)|all cancers(31;1.1e-05)			TCCTCGCGGCGGTGGAAGCTG	0.642000													11	39					0	0	0.000978	0	0
SPTBN4	57731	broad.mit.edu	37	19	41003437	41003437	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr19:41003437C>T	uc002ony.2	+	7	796	c.710C>T	c.(709-711)GCC>GTC	p.A237V	SPTBN4_uc002onx.2_Missense_Mutation_p.A237V|SPTBN4_uc002onz.2_Missense_Mutation_p.A237V	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	237	Actin-binding.|CH 2.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			AAGTCCAATGCCAACTACAAC	0.657000													13	62					0	0	0.002450	0	0
CIC	23152	broad.mit.edu	37	19	42793213	42793213	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr19:42793213G>A	uc002otf.1	+	7	1145	c.1105G>A	c.(1105-1107)GAC>AAC	p.D369N		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	369					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				CGGAGAAGTAGACAGTCAGGC	0.667000			T	DUX4	soft tissue sarcoma								14	58					0	0	0.002450	0	0
ZNF45	7596	broad.mit.edu	37	19	44419091	44419092	+	Nonsense_Mutation	DNP	CC	TA	TA			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr19:44419091_44419092CC>TA	uc002oxu.1	-	4	595_596	c.496_497GG>TA	c.(496-498)GGA>TAA	p.G166*	ZNF45_uc002oxw.1_Nonsense_Mutation_p.G166*|ZNF45_uc002oxv.1_Nonsense_Mutation_p.G166*	NM_003425	NP_003416	Q02386	ZNF45_HUMAN	zinc finger protein 45	166	C2H2-type 1; degenerate.				multicellular organismal development	nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						ACAATGTTCTCCTTTGTAGGGT	0.401000													18	49					0	0	0.004672	0	0
ZNF45	7596	broad.mit.edu	37	19	44423036	44423036	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr19:44423036C>G	uc002oxu.1	-	3	320	c.221G>C	c.(220-222)AGA>ACA	p.R74T	ZNF45_uc002oxw.1_Missense_Mutation_p.R74T|ZNF45_uc002oxv.1_Missense_Mutation_p.R74T	NM_003425	NP_003416	Q02386	ZNF45_HUMAN	zinc finger protein 45	74	KRAB.				multicellular organismal development	nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						GGAGTTATCTCTCTGGGTTGC	0.493000													11	36					0	0	0.001855	0	0
VRK3	51231	broad.mit.edu	37	19	50496177	50496177	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr19:50496177C>G	uc002prg.2	-	10	1001	c.903G>C	c.(901-903)GAG>GAC	p.E301D	VRK3_uc002prh.1_Missense_Mutation_p.E301D|VRK3_uc002pri.1_Missense_Mutation_p.E251D|VRK3_uc010ens.2_Missense_Mutation_p.E301D|VRK3_uc010ybl.1_Missense_Mutation_p.E251D|VRK3_uc010ybm.1_Missense_Mutation_p.E70D|VRK3_uc002prj.1_Missense_Mutation_p.E251D|VRK3_uc002prk.1_Missense_Mutation_p.E301D|VRK3_uc010ent.1_Missense_Mutation_p.E57D|VRK3_uc002prl.2_Missense_Mutation_p.E301D|VRK3_uc010ybn.1_Missense_Mutation_p.S279T	NM_016440	NP_057524	Q8IV63	VRK3_HUMAN	vaccinia related kinase 3 isoform 1	301	Protein kinase.					nucleus	ATP binding|protein kinase activity			stomach(1)|skin(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00166)|OV - Ovarian serous cystadenocarcinoma(262;0.00652)		CATGAACATACTCATTCTCAT	0.512000													21	73					0	0	0.001523	0	0
KLK8	11202	broad.mit.edu	37	19	51499342	51499342	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr19:51499342G>C	uc002pur.1	-	6	935	c.756C>G	c.(754-756)ATC>ATG	p.I252M	KLK8_uc002puq.1_Missense_Mutation_p.I297M|KLK8_uc002pus.1_Missense_Mutation_p.I111M|KLK8_uc002put.1_3'UTR|KLK8_uc002puu.1_Missense_Mutation_p.I252M|KLK9_uc002puv.1_RNA	NM_007196	NP_009127	O60259	KLK8_HUMAN	kallikrein 8 isoform 1 preproprotein	252	Peptidase S1.				cell death|keratinocyte proliferation|memory|negative regulation of axon regeneration|negative regulation of myelination|neuron projection morphogenesis|proteolysis|regulation of synapse organization|response to wounding	cytoplasm|extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.0033)|GBM - Glioblastoma multiforme(134;0.00888)		TGATCTTCTTGATCCAGTCCA	0.522000													23	105					0	0	0.003954	0	0
KLK8	11202	broad.mit.edu	37	19	51499375	51499375	+	Silent	SNP	G	C	C			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr19:51499375G>C	uc002pur.1	-	6	902	c.723C>G	c.(721-723)GTC>GTG	p.V241V	KLK8_uc002puq.1_Silent_p.V286V|KLK8_uc002pus.1_Silent_p.V100V|KLK8_uc002put.1_3'UTR|KLK8_uc002puu.1_Silent_p.V241V|KLK9_uc002puv.1_RNA	NM_007196	NP_009127	O60259	KLK8_HUMAN	kallikrein 8 isoform 1 preproprotein	241	Peptidase S1.				cell death|keratinocyte proliferation|memory|negative regulation of axon regeneration|negative regulation of myelination|neuron projection morphogenesis|proteolysis|regulation of synapse organization|response to wounding	cytoplasm|extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.0033)|GBM - Glioblastoma multiforme(134;0.00888)		TGTTGGTATAGACGCCAGGTT	0.537000													20	74					0	0	0.001882	0	0
KLK8	11202	broad.mit.edu	37	19	51499431	51499431	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr19:51499431G>A	uc002pur.1	-	6	846	c.667C>T	c.(667-669)CAG>TAG	p.Q223*	KLK8_uc002puq.1_Nonsense_Mutation_p.Q268*|KLK8_uc002pus.1_Nonsense_Mutation_p.Q82*|KLK8_uc002put.1_3'UTR|KLK8_uc002puu.1_Nonsense_Mutation_p.Q223*|KLK9_uc002puv.1_RNA	NM_007196	NP_009127	O60259	KLK8_HUMAN	kallikrein 8 isoform 1 preproprotein	223	Peptidase S1.				cell death|keratinocyte proliferation|memory|negative regulation of axon regeneration|negative regulation of myelination|neuron projection morphogenesis|proteolysis|regulation of synapse organization|response to wounding	cytoplasm|extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.0033)|GBM - Glioblastoma multiforme(134;0.00888)		GTGATGCCCTGGAGTGCACCA	0.562000													13	53					0	0	0.002450	0	0
ZNF814	730051	broad.mit.edu	37	19	58386284	58386285	+	Missense_Mutation	DNP	TG	CA	CA	rs148592080	by1000genomes	TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr19:58386284_58386285TG>CA	uc002qqo.2	-	3	745_746	c.473_474CA>TG	c.(472-474)GCA>GTG	p.A158V	ZNF814_uc002qqk.2_Intron|ZNF814_uc010yhl.1_Intron	NM_001144989	NP_001138461	B7Z6K7	ZN814_HUMAN	zinc finger protein 814	158				A -> V (in Ref. 1; BAH13293).	regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0						TACACCTCTTTGCAAACAACGC	0.490000													4	29					0	0	0.004672	0	0
SYNJ1	8867	broad.mit.edu	37	21	34037380	34037380	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr21:34037380C>A	uc002yqh.2	-	18	2264	c.2264G>T	c.(2263-2265)GGA>GTA	p.G755V	SYNJ1_uc011ads.1_Missense_Mutation_p.G711V|SYNJ1_uc002yqf.2_Missense_Mutation_p.G716V|SYNJ1_uc002yqg.2_Missense_Mutation_p.G711V|SYNJ1_uc002yqi.2_Missense_Mutation_p.G755V	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	716	Catalytic (Potential).						inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						TAGCATCCTTCCCTGAAAGCA	0.353000													12	15					2.27111e-07	2.12443e-06	0.001368	1	0
DSCAM	1826	broad.mit.edu	37	21	41455872	41455872	+	Silent	SNP	A	C	C			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr21:41455872A>C	uc002yyq.1	-	24	4646	c.4194T>G	c.(4192-4194)TCT>TCG	p.S1398S	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1398	Fibronectin type-III 5.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CAGGGAGCCAAGAAAGGGTGA	0.443000													9	35					0	0	0.000673	0	0
CECR6	27439	broad.mit.edu	37	22	17600670	17600670	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr22:17600670C>T	uc002zmb.2	-	1	1544	c.1348G>A	c.(1348-1350)GCC>ACC	p.A450T	CECR6_uc002zma.2_Missense_Mutation_p.A95T|uc002zmc.2_5'Flank	NM_031890	NP_114096	Q9BXQ6	CECR6_HUMAN	cat eye syndrome chromosome region, candidate 6	450	Poly-Ala.										0		all_epithelial(15;0.0181)|Lung NSC(13;0.109)|all_lung(157;0.132)		Colorectal(9;0.221)		GCCGCTGCGGCCGCGGCGTTG	0.731000													3	2					0	0	0.004672	0	0
SAPS2	9701	broad.mit.edu	37	22	50869699	50869699	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr22:50869699C>A	uc003blb.1	+	12	1645	c.1223C>A	c.(1222-1224)ACA>AAA	p.T408K	SAPS2_uc003bky.1_Missense_Mutation_p.T408K|SAPS2_uc003bkz.1_Missense_Mutation_p.T408K|SAPS2_uc003blc.2_Missense_Mutation_p.T408K|SAPS2_uc003bla.1_Missense_Mutation_p.T409K|SAPS2_uc003bld.1_5'UTR	NM_014678	NP_055493	O75170	PP6R2_HUMAN	SAPS domain family, member 2	408						cytoplasm|intracellular membrane-bounded organelle	protein binding				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.222)		GAGGAGAGGACAGAAGCCAGC	0.577000													14	75					1.05317e-09	1.00611e-08	0.002450	1	0
ZMYND10	51364	broad.mit.edu	37	3	50379244	50379244	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr3:50379244C>G	uc003dag.1	-	10	1264	c.1118G>C	c.(1117-1119)CGA>CCA	p.R373P	RASSF1_uc003dad.1_5'Flank|RASSF1_uc003dae.1_5'Flank|RASSF1_uc010hlk.1_5'Flank|RASSF1_uc003daf.1_5'Flank|RASSF1_uc011bdq.1_5'Flank|ZMYND10_uc010hll.1_Missense_Mutation_p.R368P|ZMYND10_uc003dah.1_Missense_Mutation_p.R294P	NM_015896	NP_056980	O75800	ZMY10_HUMAN	zinc finger, MYND domain-containing 10	373						cytoplasm	protein binding|zinc ion binding			lung(4)|ovary(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		GCCTTACCTTCGCGCCTGCAG	0.632000										TSP Lung(30;0.18)			10	24					0	0	0.000673	0	0
IL17RD	54756	broad.mit.edu	37	3	57132135	57132135	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr3:57132135G>T	uc003dil.2	-	12	1685	c.1596C>A	c.(1594-1596)AAC>AAA	p.N532K	IL17RD_uc003dik.2_Missense_Mutation_p.N508K|IL17RD_uc010hna.2_Missense_Mutation_p.N388K|IL17RD_uc011bex.1_Missense_Mutation_p.N388K	NM_017563	NP_060033	Q8NFM7	I17RD_HUMAN	interleukin 17 receptor D precursor	532	Cytoplasmic (Potential).					Golgi membrane|integral to membrane|plasma membrane	receptor activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0173)|Kidney(284;0.0204)		TCCGGAAGTAGTTCCTTCTGC	0.577000													6	22					0.000157383	0.00135894	0.003080	1	0
NSUN3	63899	broad.mit.edu	37	3	93781971	93781971	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr3:93781971A>G	uc003drl.1	+	1	117	c.1A>G	c.(1-3)ATG>GTG	p.M1V	DHFRL1_uc003dri.2_5'Flank|DHFRL1_uc003drj.2_5'UTR|NSUN3_uc003drk.2_RNA	NM_022072	NP_071355	Q9H649	NSUN3_HUMAN	NOL1/NOP2/Sun domain family, member 3	1							methyltransferase activity			skin(1)	1						CAGCGGGACAATGCTGACCCA	0.582000													71	93					0	0	0.003610	0	0
LOC220729	220729	broad.mit.edu	37	3	197348646	197348646	+	RNA	SNP	T	C	C	rs138265355	by1000genomes	TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr3:197348646T>C	uc011bug.1	-	4		c.445A>G			LOC220729_uc003fxw.2_RNA|LOC220729_uc003fxy.2_RNA|LOC220729_uc010iao.1_Intron					Homo sapiens cDNA FLJ60865 complete cds, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial precursor (EC 1.3.5.1).												0						TGGGCCTGCCTGCCCTTTCCA	0.532000													5	48					0	0	0.001168	0	0
FAT4	79633	broad.mit.edu	37	4	126239466	126239466	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr4:126239466C>G	uc003ifj.3	+	1	1900	c.1900C>G	c.(1900-1902)CTG>GTG	p.L634V		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	634	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GTCCTTCCGTCTGGATCCTGT	0.557000													9	21					0	0	0.004482	0	0
FAT4	79633	broad.mit.edu	37	4	126412858	126412858	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr4:126412858G>A	uc003ifj.3	+	17	14881	c.14881G>A	c.(14881-14883)GAA>AAA	p.E4961K	FAT4_uc011cgp.1_Missense_Mutation_p.E3202K|FAT4_uc003ifi.1_Missense_Mutation_p.E2438K	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4961	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AGCAGCAAATGAAGAAGGCAA	0.408000													7	10					0	0	0.001984	0	0
ARHGAP10	79658	broad.mit.edu	37	4	148944547	148944547	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr4:148944547G>A	uc003ilf.2	+	19	1850	c.1850G>A	c.(1849-1851)TGT>TAT	p.C617Y	ARHGAP10_uc003ilg.2_Missense_Mutation_p.C266Y|ARHGAP10_uc003ilh.2_Missense_Mutation_p.C198Y|ARHGAP10_uc003ili.2_Missense_Mutation_p.C50Y	NM_024605	NP_078881	A1A4S6	RHG10_HUMAN	Rho GTPase activating protein 10	617					apoptosis|filopodium assembly|regulation of apoptosis|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm|plasma membrane	cytoskeletal adaptor activity|SH3 domain binding			skin(2)|pancreas(1)|lung(1)	4	all_hematologic(180;0.151)	Renal(17;0.0166)		GBM - Glioblastoma multiforme(119;0.0423)		TACAATCTTTGTCTGGAGCTG	0.507000													13	30					0	0	0.003163	0	0
NDST1	3340	broad.mit.edu	37	5	149900988	149900988	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr5:149900988G>T	uc003lsk.3	+	2	674	c.172G>T	c.(172-174)GAC>TAC	p.D58Y	NDST1_uc011dcj.1_Missense_Mutation_p.D58Y|NDST1_uc003lsl.2_Missense_Mutation_p.D58Y	NM_001543	NP_001534	P52848	NDST1_HUMAN	N-deacetylase/N-sulfotransferase (heparan	58	Heparan sulfate N-deacetylase 1.|Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process|inflammatory response	Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			breast(1)|skin(1)	2		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGACTGCGGGGACCCGCCGCC	0.652000													12	40					5.50884e-06	5.04789e-05	0.001368	1	0
KCTD20	222658	broad.mit.edu	37	6	36446928	36446928	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr6:36446928C>A	uc003ome.2	+	4	856	c.465C>A	c.(463-465)TTC>TTA	p.F155L	KCTD20_uc011dtm.1_Missense_Mutation_p.F10L|KCTD20_uc011dtn.1_5'UTR|KCTD20_uc010jwk.2_Intron|KCTD20_uc011dto.1_Intron	NM_173562	NP_775833	Q7Z5Y7	KCD20_HUMAN	potassium channel tetramerisation domain	155	BTB.					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)	2						AGTACAACTTCACTCGGCCCA	0.433000													22	41					7.33532e-06	6.58712e-05	0.003954	1	0
HSP90AB1	3326	broad.mit.edu	37	6	44218202	44218202	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr6:44218202A>G	uc003oxa.1	+	6	907	c.823A>G	c.(823-825)AAA>GAA	p.K275E	HSP90AB1_uc011dvr.1_Missense_Mutation_p.K265E|HSP90AB1_uc003oxb.1_Missense_Mutation_p.K275E|HSP90AB1_uc011dvs.1_Missense_Mutation_p.K95E|HSP90AB1_uc003oxc.1_5'UTR	NM_007355	NP_031381	P08238	HS90B_HUMAN	heat shock 90kDa protein 1, beta	275					axon guidance|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of nitric oxide biosynthetic process|protein folding|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to unfolded protein	cytosol|melanosome	ATP binding|nitric-oxide synthase regulator activity|TPR domain binding|unfolded protein binding			lung(3)|breast(1)	4	all_cancers(18;1.7e-05)|all_lung(25;0.00747)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			gatcaaagagaaATACATTGA	0.209000													8	34					0	0	0.003080	0	0
WIPI2	26100	broad.mit.edu	37	7	5270477	5270477	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr7:5270477G>C	uc003snv.2	+	13	1480	c.1264G>C	c.(1264-1266)GAC>CAC	p.D422H	WIPI2_uc003snw.2_Missense_Mutation_p.D411H|WIPI2_uc003snx.2_Missense_Mutation_p.D404H|WIPI2_uc003sny.2_Missense_Mutation_p.D393H|WIPI2_uc010ksv.2_Missense_Mutation_p.D278H|WIPI2_uc003soa.2_Missense_Mutation_p.D352H|WIPI2_uc003sob.2_Missense_Mutation_p.D165H	NM_015610	NP_056425	Q9Y4P8	WIPI2_HUMAN	WD repeat domain, phosphoinositide interacting 2	422					autophagic vacuole assembly	cytosol|PAS complex|pre-autophagosomal structure membrane	phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding			ovary(2)	2		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0925)|OV - Ovarian serous cystadenocarcinoma(56;2.59e-14)		CTACACAGACGACCTGGGTGC	0.607000													11	39					0	0	0.000978	0	0
CCDC129	223075	broad.mit.edu	37	7	31692421	31692421	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr7:31692421A>G	uc003tcj.1	+	14	4106	c.3113A>G	c.(3112-3114)AAG>AGG	p.K1038R	CCDC129_uc011kad.1_Missense_Mutation_p.K1048R|CCDC129_uc003tci.1_Missense_Mutation_p.K889R|CCDC129_uc011kae.1_Intron|CCDC129_uc003tck.1_Missense_Mutation_p.K946R	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	1038											0						GTTGGAGAAAAGGATGCAGAT	0.443000													3	86					0	0	0.004672	0	0
HGF	3082	broad.mit.edu	37	7	81346642	81346642	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr7:81346642C>G	uc003uhl.2	-	11	1476	c.1311G>C	c.(1309-1311)GAG>GAC	p.E437D	HGF_uc003uhm.2_Missense_Mutation_p.E432D	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	437	Kringle 4.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						GGCAGTAATTCTCATTCAGCT	0.443000													11	38					0	0	0.000673	0	0
XIST	7503	broad.mit.edu	37	X	73062205	73062205	+	RNA	SNP	A	T	T			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chrX:73062205A>T	uc004ebm.1	-	1		c.10384T>A				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						AAAATAAAGGATGGCAATCCA	0.458000													3	5					0	0	0.000248	0	0
CEP350	9857	broad.mit.edu	37	1	179955328	179955329	+	Frame_Shift_Ins	INS	-	A	A			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr1:179955328_179955329insA	uc001gnt.2	+	2	395_396	c.12_13insA	c.(10-15)AGCAAAfs	p.S4fs	CEP350_uc001gnr.1_Frame_Shift_Ins_p.Q18fs|CEP350_uc009wxl.2_Frame_Shift_Ins_p.S4fs	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	4_5						centrosome|nucleus|spindle				ovary(4)	4						TGAGGAGCAGCAAATCAAAAGA	0.297													2	4	---	---	---	---					
CD44	960	broad.mit.edu	37	11	35222633	35222634	+	Frame_Shift_Ins	INS	-	ACCAC	ACCAC			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr11:35222633_35222634insACCAC	uc001mvu.2	+	8	1361_1362	c.927_928insACCAC	c.(925-930)TCAACCfs	p.S309fs	CD44_uc001mvv.2_Frame_Shift_Ins_p.S266fs|CD44_uc001mvw.2_Intron|CD44_uc001mvx.2_Intron|CD44_uc001mvy.2_Intron|CD44_uc001mwc.3_Intron|CD44_uc010rer.1_Intron|CD44_uc009ykh.2_Intron|CD44_uc010res.1_Intron|CD44_uc010ret.1_Intron|CD44_uc010reu.1_Intron	NM_000610	NP_000601	P16070	CD44_HUMAN	CD44 antigen isoform 1 precursor	309_310	Extracellular (Potential).|Stem.				cell-cell adhesion|cell-matrix adhesion|interferon-gamma-mediated signaling pathway|negative regulation of apoptosis|negative regulation of DNA damage response, signal transduction by p53 class mediator|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation	cell surface|Golgi apparatus|integral to plasma membrane	collagen binding|hyaluronic acid binding|receptor activity			pancreas(1)	1	all_cancers(35;0.212)|all_lung(20;0.0874)|all_epithelial(35;0.112)	all_hematologic(20;0.107)	STAD - Stomach adenocarcinoma(6;0.00731)		Hyaluronidase(DB00070)	TCACAGTTTCAACCACACCACG	0.455													12	106	---	---	---	---					
DZIP1L	199221	broad.mit.edu	37	3	137783520	137783521	+	Frame_Shift_Ins	INS	-	A	A			TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr3:137783520_137783521insA	uc003erq.2	-	15	2454_2455	c.2091_2092insT	c.(2089-2094)TTTATGfs	p.F697fs		NM_173543	NP_775814	Q8IYY4	DZI1L_HUMAN	DAZ interacting protein 1-like	697_698						intracellular	zinc ion binding			ovary(1)|pancreas(1)	2						GCATTGGGCATAAAAAACAGAC	0.515													78	295	---	---	---	---					
SNAPC4	6621	broad.mit.edu	37	9	139277995	139277997	+	In_Frame_Del	DEL	GCT	-	-	rs35266724		TCGA-D3-A3CC-06A-11D-A19A-08	TCGA-D3-A3CC-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	287a6ff8-a2e4-4d46-874a-46cc88cb5e12	45cc5a5b-c98c-4fbd-ab95-eb1b51ebd565	g.chr9:139277995_139277997delGCT	uc004chh.2	-	15	1633_1635	c.1624_1626delAGC	c.(1624-1626)AGCdel	p.S542del		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	542					snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		CGTCCTCCTCgctgctgctgctg	0.473													3	3	---	---	---	---					
