Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SCNN1D	6339	broad.mit.edu	37	1	1221555	1221555	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:1221555C>T	uc001adu.1	+	6	940	c.316C>T	c.(316-318)CTC>TTC	p.L106F	SCNN1D_uc001adt.1_Missense_Mutation_p.L270F|SCNN1D_uc001adw.2_Missense_Mutation_p.L172F|SCNN1D_uc001adx.2_5'UTR|SCNN1D_uc001adv.2_Missense_Mutation_p.L106F	NM_002978	NP_002969			sodium channel, nonvoltage-gated 1, delta												0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;3.01e-35)|OV - Ovarian serous cystadenocarcinoma(86;2.46e-21)|Colorectal(212;0.000157)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00229)|BRCA - Breast invasive adenocarcinoma(365;0.00251)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.034)|Lung(427;0.199)		GCTGGGGCTCCTCTTTGAGCG	0.692													6	8					0	0	0.004482	0	0
PRDM16	63976	broad.mit.edu	37	1	3328323	3328323	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:3328323C>T	uc001akf.2	+	9	1642	c.1562C>T	c.(1561-1563)TCC>TTC	p.S521F	PRDM16_uc001akc.2_Missense_Mutation_p.S521F|PRDM16_uc001akd.2_Missense_Mutation_p.S521F|PRDM16_uc001ake.2_Missense_Mutation_p.S521F|PRDM16_uc009vlh.2_Missense_Mutation_p.S222F	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	521	Pro-rich.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		TTCCCTCCATCCTTGTACCCC	0.687			T	EVI1	MDS|AML								75	127					0	0	0.003610	0	0
MAD2L2	10459	broad.mit.edu	37	1	11736152	11736152	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:11736152G>A	uc001asp.2	-	6	566	c.378C>T	c.(376-378)TTC>TTT	p.F126F	MAD2L2_uc009vnc.2_Silent_p.F126F|MAD2L2_uc001asq.3_Silent_p.F126F	NM_006341	NP_006332	Q9UI95	MD2L2_HUMAN	MAD2 homolog	126	Mediates interaction with REV1 and REV3L and homodimerization.|HORMA.				cell division|DNA damage response, signal transduction resulting in transcription|double-strand break repair|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of mitotic anaphase-promoting complex activity|positive regulation of peptidyl-serine phosphorylation|positive regulation of transcription, DNA-dependent|regulation of cell growth|transcription, DNA-dependent	cytoplasm|nucleoplasm|spindle|zeta DNA polymerase complex	JUN kinase binding				0	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.04e-06)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|Kidney(185;0.000733)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCTTCAGGATGAAGGCCCGGA	0.607								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					20	46					0	0	0.010504	0	0
LOC440563	440563	broad.mit.edu	37	1	13183350	13183350	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:13183350G>A	uc010obg.1	-	1	618	c.523C>T	c.(523-525)CTG>TTG	p.L175L		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	175						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						TCTCCTTTCAGCTTTCCAGAC	0.463													49	608					0	0	0.003610	0	0
ESPNP	284729	broad.mit.edu	37	1	17033884	17033884	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:17033884C>T	uc001azn.1	-	4	595	c.481G>A	c.(481-483)GAG>AAG	p.E161K	ESPNP_uc010ocj.1_3'UTR	NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						ACTTCCAGCTCCGCGCCGTTC	0.721													5	7					0	0	0.001984	0	0
TAS1R2	80834	broad.mit.edu	37	1	19180908	19180908	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:19180908C>T	uc001bba.1	-	3	1057	c.1056G>A	c.(1054-1056)AGG>AGA	p.R352R		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	352	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	TCTGGCTGGTCCTGCTGAGGG	0.632													11	18					0	0	0.000978	0	0
UBR4	23352	broad.mit.edu	37	1	19443892	19443892	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:19443892G>A	uc001bbi.2	-	73	10650	c.10646C>T	c.(10645-10647)TCC>TTC	p.S3549F	UBR4_uc001bbj.1_5'UTR	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	3549					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		CACTTTAATGGAAGACAGCTT	0.423													46	77					0	0	0.003610	0	0
LUZP1	7798	broad.mit.edu	37	1	23417851	23417851	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:23417851G>A	uc001bgk.2	-	4	3288	c.2904C>T	c.(2902-2904)TCC>TCT	p.S968S	LUZP1_uc010odv.1_Silent_p.S968S|LUZP1_uc001bgl.2_Silent_p.S968S|LUZP1_uc001bgm.1_Silent_p.S968S	NM_033631	NP_361013	Q86V48	LUZP1_HUMAN	leucine zipper protein 1	968						nucleus					0		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Ovarian(437;0.00373)|Breast(348;0.00815)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;4.88e-27)|Colorectal(126;8.36e-08)|COAD - Colon adenocarcinoma(152;4.31e-06)|GBM - Glioblastoma multiforme(114;8.64e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00112)|KIRC - Kidney renal clear cell carcinoma(1967;0.00176)|STAD - Stomach adenocarcinoma(196;0.0146)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.0967)|LUSC - Lung squamous cell carcinoma(448;0.199)		CAAAAAGGCAGGACCTGGGCT	0.542													10	28					0	0	0.001368	0	0
TRIT1	54802	broad.mit.edu	37	1	40310296	40310296	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:40310296G>A	uc010oiz.1	-	9	1037	c.1023C>T	c.(1021-1023)GTC>GTT	p.V341V	TRIT1_uc001cec.3_RNA|TRIT1_uc001ced.3_Silent_p.V37V|TRIT1_uc001cee.3_RNA|TRIT1_uc001cef.3_RNA|TRIT1_uc001ceg.3_Silent_p.V95V|TRIT1_uc001ceh.3_Silent_p.V95V|TRIT1_uc009vvv.2_Silent_p.V174V|TRIT1_uc001cei.3_Silent_p.V95V|TRIT1_uc001ceq.2_Silent_p.V37V|TRIT1_uc001cek.2_Silent_p.V37V|TRIT1_uc009vvx.2_RNA|TRIT1_uc001cel.2_Intron|TRIT1_uc001cem.2_Silent_p.V259V|TRIT1_uc001cen.2_Silent_p.V95V|TRIT1_uc001ceo.2_Silent_p.V95V|TRIT1_uc001cep.2_Silent_p.V95V	NM_017646	NP_060116	Q9H3H1	MOD5_HUMAN	tRNA isopentenyltransferase 1 precursor	341					tRNA processing	mitochondrion	ATP binding|metal ion binding|tRNA dimethylallyltransferase activity			ovary(1)	1	all_cancers(7;4.55e-14)|all_lung(5;1.23e-16)|all_epithelial(6;2.17e-16)|Lung NSC(20;7.03e-07)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;3.29e-18)|Epithelial(16;3.07e-17)|all cancers(16;6.21e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			AGACAGGGGGGACAATGGGAC	0.468													21	48					0	0	0.003330	0	0
LEPRE1	64175	broad.mit.edu	37	1	43224650	43224650	+	Silent	SNP	A	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:43224650A>G	uc001chv.2	-	4	926	c.813T>C	c.(811-813)CAT>CAC	p.H271H	LEPRE1_uc001chw.2_Silent_p.H271H|LEPRE1_uc001chx.3_Silent_p.H271H	NM_022356	NP_071751	Q32P28	P3H1_HUMAN	leprecan 1 isoform 1	271					negative regulation of cell proliferation	endoplasmic reticulum|proteinaceous extracellular matrix	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			ovary(3)|lung(1)	4	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)			L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	CCTGGATGTAATGATCTGAAA	0.408													31	41					0	0	0.006230	0	0
SLC2A1	6513	broad.mit.edu	37	1	43396774	43396774	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:43396774G>A	uc001cik.2	-	3	743	c.218C>T	c.(217-219)TCT>TTT	p.S73F		NM_006516	NP_006507	P11166	GTR1_HUMAN	solute carrier family 2 (facilitated glucose	73	Helical; Name=2; (Potential).				carbohydrate metabolic process|energy reserve metabolic process|regulation of insulin secretion|water-soluble vitamin metabolic process	integral to membrane|melanosome|membrane fraction|midbody	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			central_nervous_system(2)|pancreas(2)|ovary(1)	5	Ovarian(52;0.00579)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0122)			Etomidate(DB00292)	GCCCCCAACAGAAAAGATGGC	0.587											OREG0013425	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	45					0	0	0.002445	0	0
CYP4Z1	199974	broad.mit.edu	37	1	47534309	47534309	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:47534309G>A	uc001cqu.1	+	2	196	c.193G>A	c.(193-195)GAG>AAG	p.E65K		NM_178134	NP_835235	Q86W10	CP4Z1_HUMAN	cytochrome P450 4Z1	65	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			skin(1)	1						CCCAGTAAAGGAGTTTGAGGT	0.458													64	143					0	0	0.003610	0	0
C1orf175	374977	broad.mit.edu	37	1	55174728	55174728	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:55174728C>T	uc010ooe.1	+	23	4033	c.3709C>T	c.(3709-3711)CGT>TGT	p.R1237C	C1orf175_uc001cxq.2_RNA|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.R755C|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Missense_Mutation_p.R438C	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	1237						integral to membrane	binding				0						GACAGAAGATCGTCTGAATGA	0.517													50	81					0	0	0.003610	0	0
C1orf168	199920	broad.mit.edu	37	1	57209928	57209928	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:57209928C>G	uc001cym.3	-	10	1805	c.1399G>C	c.(1399-1401)GAG>CAG	p.E467Q	C1orf168_uc009vzu.1_RNA|C1orf168_uc001cyl.2_RNA	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	467										ovary(3)|skin(2)	5						TCCAAAACCTCCAGATGCCCA	0.453													9	18					0	0	0.008291	0	0
C8B	732	broad.mit.edu	37	1	57417738	57417738	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:57417738C>T	uc001cyp.2	-	5	716	c.649G>A	c.(649-651)GAA>AAA	p.E217K	C8B_uc010oon.1_Missense_Mutation_p.E155K|C8B_uc010ooo.1_Missense_Mutation_p.E165K	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	217	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						GTGTAGCTTTCCACATTGTAG	0.294													53	75					0	0	0.003610	0	0
DAB1	1600	broad.mit.edu	37	1	57480812	57480812	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:57480812G>A	uc001cys.1	-	14	1862	c.1188C>T	c.(1186-1188)TCC>TCT	p.S396S	DAB1_uc001cyt.1_Silent_p.S394S|DAB1_uc001cyq.1_Silent_p.S394S|DAB1_uc001cyr.1_Silent_p.S310S|DAB1_uc009vzw.1_Silent_p.S378S|DAB1_uc009vzx.1_Silent_p.S396S	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	429					cell differentiation|nervous system development					skin(2)|ovary(1)	3						TTGACCTGGTGGAGTCACTCG	0.597													43	68					0	0	0.003610	0	0
OMA1	115209	broad.mit.edu	37	1	58996366	58996366	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:58996366G>A	uc001cyy.2	-	6	1135	c.1047C>T	c.(1045-1047)TTC>TTT	p.F349F	DAB1_uc001cyt.1_Intron|OMA1_uc001cyx.1_Silent_p.F349F	NM_145243	NP_660286	Q96E52	OMA1_HUMAN	OMA1 homolog, zinc metallopeptidase precursor	349	Helical; (Potential).				proteolysis	integral to membrane|mitochondrial membrane	metal ion binding|metalloendopeptidase activity			large_intestine(1)	1	all_cancers(7;6.54e-05)					TCATACCTAGGAAATCCAACA	0.368													17	31					0	0	0.001882	0	0
L1TD1	54596	broad.mit.edu	37	1	62676217	62676217	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:62676217G>A	uc001dae.3	+	4	2073	c.1771G>A	c.(1771-1773)GAA>AAA	p.E591K		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	591										ovary(1)|skin(1)	2						GAAAACAGAAGAAAAGAAACA	0.259													6	19					0	0	0.001984	0	0
DIRAS3	9077	broad.mit.edu	37	1	68512653	68512653	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:68512653G>A	uc001ded.2	-	2	623	c.328C>T	c.(328-330)CAC>TAC	p.H110Y	uc001deb.1_Intron|uc001dec.1_Intron	NM_004675	NP_004666	O95661	DIRA3_HUMAN	DIRAS family, GTP-binding RAS-like 3	110					regulation of cyclin-dependent protein kinase activity|regulation of gene expression by genetic imprinting|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			skin(1)	1						ACGAAGGCGTGGCCCCGGGCT	0.582													4	184					0	0	0.009096	0	0
C1orf173	127254	broad.mit.edu	37	1	75086460	75086460	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:75086460C>T	uc001dgg.2	-	8	1177	c.958G>A	c.(958-960)GGG>AGG	p.G320R	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.G114R	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	320										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						AGGTTTTCCCCACCACAGTGC	0.363													32	96					0	0	0.006999	0	0
ELTD1	64123	broad.mit.edu	37	1	79385976	79385976	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:79385976G>A	uc001diq.3	-	10	1509	c.1353C>T	c.(1351-1353)TTC>TTT	p.F451F		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	451	Helical; Name=1; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		TTTCACTGAAGAACCAGAAGG	0.323													31	60					0	0	0.004878	0	0
VCAM1	7412	broad.mit.edu	37	1	101186048	101186048	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:101186048C>T	uc001dti.2	+	2	201	c.81C>T	c.(79-81)ATC>ATT	p.I27I	VCAM1_uc001dtj.2_Silent_p.I27I|VCAM1_uc010ouj.1_Silent_p.I27I	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	27	Ig-like C2-type 1.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	CTTTTAAAATCGAGACCACCC	0.408													30	77					0	0	0.003755	0	0
NTNG1	22854	broad.mit.edu	37	1	107867541	107867541	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:107867541G>A	uc001dvh.3	+	3	1602	c.884G>A	c.(883-885)GGA>GAA	p.G295E	NTNG1_uc001dvf.3_Missense_Mutation_p.G295E|NTNG1_uc010out.1_Missense_Mutation_p.G295E|NTNG1_uc001dvc.3_Missense_Mutation_p.G295E|NTNG1_uc001dvd.1_Missense_Mutation_p.G295E	NM_001113226	NP_001106697	Q9Y2I2	NTNG1_HUMAN	netrin G1 isoform 1	295	Laminin N-terminal.				axonogenesis	anchored to plasma membrane	protein binding			large_intestine(2)|ovary(2)|skin(2)	6		all_epithelial(167;1.39e-05)|all_lung(203;0.000115)|Lung NSC(277;0.000238)|Breast(1374;0.243)		Lung(183;0.0946)|BRCA - Breast invasive adenocarcinoma(282;0.237)|Epithelial(280;0.245)		AAGGTGCGAGGAAGGTAAGAG	0.448													38	69					0	0	0.003610	0	0
AMPD2	271	broad.mit.edu	37	1	110163659	110163659	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:110163659C>T	uc009wfh.1	+	2	566	c.24C>T	c.(22-24)CTC>CTT	p.L8L	AMPD2_uc009wfg.1_Intron|AMPD2_uc001dyb.1_Intron|AMPD2_uc001dyc.1_Silent_p.L8L|AMPD2_uc010ovr.1_5'UTR|AMPD2_uc010ovs.1_5'Flank	NM_004037	NP_004028	Q01433	AMPD2_HUMAN	adenosine monophosphate deaminase 2 (isoform L)	8					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|breast(1)	3		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.0425)|all cancers(265;0.0884)|Colorectal(144;0.109)|Epithelial(280;0.111)|LUSC - Lung squamous cell carcinoma(189;0.228)		GCCAGGGCCTCTTCCGCCTGC	0.672													16	38					0	0	0.003330	0	0
KCND3	3752	broad.mit.edu	37	1	112524853	112524853	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:112524853G>A	uc001ebu.1	-	2	976	c.496C>T	c.(496-498)CGC>TGC	p.R166C	KCND3_uc001ebv.1_Missense_Mutation_p.R166C	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	166	Cytoplasmic (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		ATGGTCTGGCGGAAGCTGAGC	0.607													12	25					0	0	0.001855	0	0
PTPN22	26191	broad.mit.edu	37	1	114380685	114380685	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:114380685C>T	uc001eds.2	-	13	1467	c.1337G>A	c.(1336-1338)CGG>CAG	p.R446Q	PTPN22_uc009wgq.2_Missense_Mutation_p.R391Q|PTPN22_uc010owo.1_Missense_Mutation_p.R202Q|PTPN22_uc001edt.2_Intron|PTPN22_uc009wgr.2_Missense_Mutation_p.R446Q|PTPN22_uc009wgs.2_Missense_Mutation_p.R319Q|PTPN22_uc001edu.2_Missense_Mutation_p.R446Q	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	446					negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGATTTGGTCCGTGTTATTGG	0.378													23	45					0	0	0.005443	0	0
SPAG17	200162	broad.mit.edu	37	1	118635909	118635909	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:118635909A>G	uc001ehk.2	-	8	1111	c.1043T>C	c.(1042-1044)ATT>ACT	p.I348T		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	348						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		CAAGCAGGCAATATTTTCAAA	0.363													3	10					0	0	0.004672	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144859759	144859759	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:144859759C>T	uc001elw.3	-	38	6616	c.6325G>A	c.(6325-6327)GAT>AAT	p.D2109N	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.D2003N|PDE4DIP_uc001elv.3_Missense_Mutation_p.D1116N	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	2109					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TCCTTCCTACCTTGGAGGAGC	0.572			T	PDGFRB	MPD								14	87					0	0	0.006122	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144874018	144874018	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:144874018G>A	uc001elw.3	-	31	5230	c.4939C>T	c.(4939-4941)CAT>TAT	p.H1647Y	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.H1603Y|PDE4DIP_uc001elv.3_Missense_Mutation_p.H654Y	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1647					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TGACTCGAATGATGGATGGAA	0.458			T	PDGFRB	MPD								88	483					0	0	0.003610	0	0
NBPF10	100132406	broad.mit.edu	37	1	145359173	145359173	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:145359173C>T	uc001end.3	+	74	9373	c.9338C>T	c.(9337-9339)GCT>GTT	p.A3113V	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron|NBPF10_uc001enc.2_Intron|NBPF10_uc010oyq.1_Intron|NBPF10_uc010oyr.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3038											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		GTTGGCTTGGCTGTTGACATG	0.463													15	654					0	0	0.003163	0	0
ITGA10	8515	broad.mit.edu	37	1	145534130	145534130	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:145534130G>A	uc001eoa.2	+	14	1711	c.1635G>A	c.(1633-1635)CAG>CAA	p.Q545Q	NBPF10_uc001emp.3_Intron|ITGA10_uc010oyv.1_Silent_p.Q414Q|ITGA10_uc009wiw.2_Silent_p.Q402Q|ITGA10_uc010oyw.1_Silent_p.Q490Q	NM_003637	NP_003628	O75578	ITA10_HUMAN	integrin, alpha 10 precursor	545	Extracellular (Potential).|FG-GAP 6.				cell-matrix adhesion|integrin-mediated signaling pathway	integrin complex	collagen binding|receptor activity			lung(2)|ovary(2)|kidney(2)|large_intestine(1)|skin(1)	8	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					AACCCCCCCAGGATGCTCGGT	0.562													65	197					0	0	0.003610	0	0
CHD1L	9557	broad.mit.edu	37	1	146757056	146757056	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:146757056C>T	uc001epm.3	+	17	1973	c.1910C>T	c.(1909-1911)CCA>CTA	p.P637L	uc001epp.2_Intron|CHD1L_uc001epn.3_Missense_Mutation_p.P524L|CHD1L_uc010ozo.1_RNA|CHD1L_uc009wjg.2_RNA|CHD1L_uc009wjh.2_Missense_Mutation_p.P543L|CHD1L_uc010ozp.1_Missense_Mutation_p.P356L|CHD1L_uc001epo.3_Missense_Mutation_p.P433L|CHD1L_uc010ozq.1_Missense_Mutation_p.P210L|CHD1L_uc009wji.2_Missense_Mutation_p.P356L	NM_004284	NP_004275	Q86WJ1	CHD1L_HUMAN	chromodomain helicase DNA binding protein	637					chromatin remodeling|DNA repair	cytoplasm|nucleus|plasma membrane	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(3)|lung(2)|upper_aerodigestive_tract(1)	6	all_hematologic(923;0.0487)					GTTCTGAGTCCAGAAGAGCTG	0.493													48	148					0	0	0.003610	0	0
HIST2H3D	653604	broad.mit.edu	37	1	149784891	149784891	+	Nonsense_Mutation	SNP	T	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:149784891T>A	uc010pbl.1	-	1	346	c.346A>T	c.(346-348)AAG>TAG	p.K116*	HIST2H2BF_uc010pbj.1_5'Flank|HIST2H2BF_uc010pbk.1_5'Flank|HIST2H2BF_uc001esr.2_5'Flank	NM_001123375	NP_001116847	Q71DI3	H32_HUMAN	histone cluster 2, H3d	116					blood coagulation|nucleosome assembly	nucleoplasm|nucleosome	DNA binding|protein binding				0						GTCACGCGCTTGGCATGGATG	0.617													77	64					0	0	0.003610	0	0
C1orf51	148523	broad.mit.edu	37	1	150259171	150259171	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:150259171C>T	uc001euh.2	+	6	1099	c.963C>T	c.(961-963)ATC>ATT	p.I321I	C1orf51_uc001eui.2_Silent_p.I233I|C1orf51_uc001euj.2_Silent_p.I321I	NM_144697	NP_653298	Q8N365	CA051_HUMAN	hypothetical protein LOC148523	321											0	Lung NSC(24;7.29e-29)|Breast(34;0.00211)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			CTCCTGTCATCCCTGGTGAGC	0.552													64	178					0	0	0.003610	0	0
CTSS	1520	broad.mit.edu	37	1	150727594	150727594	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:150727594G>A	uc001evn.2	-	4	415	c.282C>T	c.(280-282)TCC>TCT	p.S94S	CTSS_uc010pcj.1_Intron|CTSS_uc001evo.1_Silent_p.S94S	NM_004079	NP_004070	P25774	CATS_HUMAN	cathepsin S preproprotein	94					immune response|proteolysis	extracellular region|lysosome	cysteine-type endopeptidase activity				0	all_cancers(9;6.17e-52)|all_epithelial(9;9.7e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.00146)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0485)|Epithelial(6;5.02e-21)|all cancers(9;1.28e-20)|OV - Ovarian serous cystadenocarcinoma(6;1.09e-14)|BRCA - Breast invasive adenocarcinoma(12;0.00501)|LUSC - Lung squamous cell carcinoma(543;0.171)			GAACTCTCAGGGAACTCATCA	0.313													69	230					0	0	0.003610	0	0
SEMA6C	10500	broad.mit.edu	37	1	151108069	151108069	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:151108069G>A	uc001ewu.2	-	14	1731	c.1431C>T	c.(1429-1431)GCC>GCT	p.A477A	SEMA6C_uc001ewv.2_Silent_p.A477A|SEMA6C_uc001eww.2_Silent_p.A437A|SEMA6C_uc010pcq.1_Silent_p.A477A	NM_030913	NP_112175	Q9H3T2	SEM6C_HUMAN	semaphorin Y precursor	477	Extracellular (Potential).|Sema.					integral to membrane	receptor activity			ovary(1)|skin(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GGCCTCACCGGGCAGGGCTGT	0.602													65	156					0	0	0.003610	0	0
FLG	2312	broad.mit.edu	37	1	152282785	152282786	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:152282785_152282786CC>TT	uc001ezu.1	-	3	4612_4613	c.4576_4577GG>AA	c.(4576-4578)GGA>AAA	p.G1526K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1526	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATCAGACCTTCCCTGGGGTGTG	0.574									Ichthyosis				154	474					0	0	0.004672	0	0
FLG	2312	broad.mit.edu	37	1	152283290	152283290	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:152283290C>T	uc001ezu.1	-	3	4108	c.4072G>A	c.(4072-4074)GGA>AGA	p.G1358R	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1358	Ser-rich.|Filaggrin 8.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGGCGGGATCCATGTCTTTCT	0.547									Ichthyosis				415	362					0	0	0.003610	0	0
FLG2	388698	broad.mit.edu	37	1	152324459	152324459	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:152324459G>A	uc001ezw.3	-	3	5876	c.5803C>T	c.(5803-5805)CCT>TCT	p.P1935S	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1935	Filaggrin 8.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCATGACTAGGGTGGCCATGT	0.527													102	262					0	0	0.003610	0	0
LCE1C	353133	broad.mit.edu	37	1	152777611	152777611	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:152777611C>T	uc001fap.1	-	2	395	c.344G>A	c.(343-345)GGA>GAA	p.G115E		NM_178351	NP_848128	Q5T751	LCE1C_HUMAN	late cornified envelope 1C	115	Gly-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCAGCAGCCTCCAGAGTGCTG	0.657													49	99					0	0	0.003610	0	0
IVL	3713	broad.mit.edu	37	1	152882432	152882432	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:152882432G>A	uc001fau.2	+	2	205	c.159G>A	c.(157-159)GTG>GTA	p.V53V		NM_005547	NP_005538	P07476	INVO_HUMAN	involucrin	53					isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine|keratinization|response to UV-B	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(3)	3	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGCTCCCAGTGGAGGTCCCAT	0.443													27	90					0	0	0.009535	0	0
SPRR3	6707	broad.mit.edu	37	1	152975707	152975707	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:152975707G>A	uc001fax.3	+	3	361	c.211G>A	c.(211-213)GAG>AAG	p.E71K	SPRR3_uc001faz.3_Missense_Mutation_p.E71K|SPRR3_uc001fay.2_Missense_Mutation_p.E63K	NM_005416	NP_005407	Q9UBC9	SPRR3_HUMAN	small proline-rich protein 3	71	14 X 8 AA approximate tandem repeats.|4.				keratinization|peptide cross-linking|wound healing	cytoplasm	protein binding|structural molecule activity			skin(1)	1	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CAAGGTCCCTGAGCCAGGCTG	0.582													25	72					0	0	0.009535	0	0
SPRR2A	6700	broad.mit.edu	37	1	153029049	153029049	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:153029049G>A	uc001fbd.2	-	2	224	c.163C>T	c.(163-165)CCT>TCT	p.P55S	SPRR2D_uc009wnz.2_Intron|SPRR2A_uc001fbf.2_RNA|SPRR2A_uc009woa.2_RNA	NM_005988	NP_005979	P35326	SPR2A_HUMAN	small proline-rich protein 2A	55					keratinization	cornified envelope|cytoplasm	binding			ovary(1)	1	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GTCACAGGAGGATATTTCTGC	0.542													90	281					0	0	0.003610	0	0
PGLYRP4	57115	broad.mit.edu	37	1	153313022	153313022	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:153313022C>T	uc001fbo.2	-	7	724	c.659G>A	c.(658-660)GGA>GAA	p.G220E	PGLYRP4_uc001fbp.2_Missense_Mutation_p.G216E	NM_020393	NP_065126	Q96LB8	PGRP4_HUMAN	peptidoglycan recognition protein-I-beta	220					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)|skin(1)	4	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			CTCCCTGGCTCCCCACACAGA	0.592													20	86					0	0	0.004656	0	0
INTS3	65123	broad.mit.edu	37	1	153730128	153730128	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:153730128C>T	uc009wom.2	+	11	1259	c.1038C>T	c.(1036-1038)CGC>CGT	p.R346R	INTS3_uc001fct.2_Silent_p.R346R|INTS3_uc001fcu.2_Silent_p.R38R|INTS3_uc001fcv.2_Silent_p.R140R|INTS3_uc010peb.1_Silent_p.R140R|INTS3_uc001fcw.2_5'UTR|INTS3_uc010pec.1_5'UTR	NM_023015	NP_075391	Q68E01	INT3_HUMAN	integrator complex subunit 3	347					DNA repair|G2/M transition checkpoint|response to ionizing radiation|snRNA processing	integrator complex|SOSS complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			AGTCTCTGCGCTGTGACCTCA	0.517													112	73					0	0	0.003610	0	0
RUSC1	23623	broad.mit.edu	37	1	155292770	155292770	+	Silent	SNP	A	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:155292770A>C	uc001fkj.2	+	2	1435	c.1206A>C	c.(1204-1206)CCA>CCC	p.P402P	RAG1AP1_uc010pey.1_Intron|C1orf104_uc001fkh.1_5'Flank|C1orf104_uc001fki.2_Intron|RUSC1_uc001fkk.2_Silent_p.P402P|RUSC1_uc009wqn.1_RNA|RUSC1_uc009wqo.1_5'Flank|RUSC1_uc001fkl.2_5'Flank|RUSC1_uc001fkp.2_5'Flank|RUSC1_uc001fkq.2_5'Flank|RUSC1_uc010pgb.1_5'Flank|RUSC1_uc009wqp.1_5'Flank|RUSC1_uc001fkn.2_5'Flank|RUSC1_uc001fko.2_5'Flank|RUSC1_uc001fkr.2_5'Flank|RUSC1_uc001fks.2_5'Flank	NM_001105203	NP_001098673	Q9BVN2	RUSC1_HUMAN	RUN and SH3 domain containing 1 isoform a	402						cytoplasm|nucleolus	SH3/SH2 adaptor activity			ovary(2)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;1.55e-10)|all cancers(21;4.15e-10)|BRCA - Breast invasive adenocarcinoma(34;0.000549)|LUSC - Lung squamous cell carcinoma(543;0.127)			CCCGGCCCCCACCCCCGCCTG	0.726													4	12					0	0	0.004482	0	0
ASH1L	55870	broad.mit.edu	37	1	155324369	155324369	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:155324369G>A	uc009wqq.2	-	16	7603	c.7123C>T	c.(7123-7125)CGT>TGT	p.R2375C	RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Missense_Mutation_p.R2370C	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	2375					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			TGTTTTTGACGAATCTTCTCC	0.373													82	189					0	0	0.003610	0	0
FCRL5	83416	broad.mit.edu	37	1	157516944	157516944	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:157516944G>A	uc001fqu.2	-	3	254	c.96C>T	c.(94-96)ACC>ACT	p.T32T	FCRL5_uc009wsm.2_Silent_p.T32T|FCRL5_uc010phv.1_Silent_p.T32T|FCRL5_uc010phw.1_Intron|FCRL5_uc001fqv.1_Silent_p.T32T|FCRL5_uc010phx.1_5'UTR	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	32	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				GGAAGACTGTGGTCCATGGAG	0.517													65	141					0	0	0.003610	0	0
SPTA1	6708	broad.mit.edu	37	1	158613207	158613207	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:158613207C>T	uc001fst.1	-	31	4546	c.4347G>A	c.(4345-4347)AAG>AAA	p.K1449K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1449	Spectrin 14.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GGTCAGTGATCTTCCCTTCCT	0.453													19	68					0	0	0.001882	0	0
SELP	6403	broad.mit.edu	37	1	169578921	169578921	+	Missense_Mutation	SNP	G	A	A	rs3917742	byFrequency	TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:169578921G>A	uc001ggi.3	-	8	1219	c.1154C>T	c.(1153-1155)TCG>TTG	p.S385L	SELP_uc001ggh.2_Missense_Mutation_p.S220L|SELP_uc009wvr.2_Missense_Mutation_p.S385L	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	385	Sushi 4.|Extracellular (Potential).				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	CGGCTCACACGAAATAGCTAA	0.478													15	47					0	0	0.008871	0	0
SELL	6402	broad.mit.edu	37	1	169673786	169673786	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:169673786C>T	uc001ggk.2	-	5	887	c.689G>A	c.(688-690)GGA>GAA	p.G230E	C1orf112_uc001ggj.2_Intron|SELL_uc010pls.1_Missense_Mutation_p.G183E|SELL_uc001ggl.1_Missense_Mutation_p.G243E	NM_000655	NP_000646	P14151	LYAM1_HUMAN	selectin L precursor	230	Extracellular (Potential).|Sushi 1.				blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	integral to plasma membrane	glycosphingolipid binding|heparin binding|protease binding|sugar binding				0	all_hematologic(923;0.208)					TAAGTTTGTTCCTTCAGAGCA	0.498													3	7					0	0	0.004672	0	0
FMO3	2328	broad.mit.edu	37	1	171083427	171083427	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:171083427G>A	uc001ghi.2	+	7	1219	c.1108G>A	c.(1108-1110)GGC>AGC	p.G370S	FMO3_uc001ghh.2_Missense_Mutation_p.G370S|FMO3_uc010pmb.1_Missense_Mutation_p.G350S|FMO3_uc010pmc.1_Missense_Mutation_p.G307S	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	370					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AGCAGTGATTGGCTTTGTCCA	0.443													26	74					0	0	0.004289	0	0
TNN	63923	broad.mit.edu	37	1	175046776	175046776	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:175046776C>T	uc001gkl.1	+	2	335	c.222C>T	c.(220-222)GCC>GCT	p.A74A	TNN_uc010pmx.1_Silent_p.A74A	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	74					cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CGCTCTTGGCCCTGGGGGAGG	0.597													17	26					0	0	0.004990	0	0
TNN	63923	broad.mit.edu	37	1	175046845	175046845	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:175046845G>A	uc001gkl.1	+	2	404	c.291G>A	c.(289-291)AAG>AAA	p.K97K	TNN_uc010pmx.1_Silent_p.K97K	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	97					cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CGCCACAGAAGGACTGCGAGT	0.602													22	68					0	0	0.004656	0	0
TNN	63923	broad.mit.edu	37	1	175063248	175063248	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:175063248G>A	uc001gkl.1	+	7	1560	c.1447G>A	c.(1447-1449)GAC>AAC	p.D483N	TNN_uc010pmx.1_Missense_Mutation_p.D483N	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	483	Fibronectin type-III 3.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		TGCTGATGGGGACACCAAGGA	0.547													18	41					0	0	0.002299	0	0
PAPPA2	60676	broad.mit.edu	37	1	176525628	176525628	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:176525628G>A	uc001gkz.2	+	2	1334	c.170G>A	c.(169-171)CGA>CAA	p.R57Q	PAPPA2_uc001gky.1_Missense_Mutation_p.R57Q|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	57					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GCCAAGGTTCGAAGACCCAGA	0.562													40	124					0	0	0.002522	0	0
ASTN1	460	broad.mit.edu	37	1	176838012	176838012	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:176838012G>A	uc001glc.2	-	22	3827	c.3615C>T	c.(3613-3615)TTC>TTT	p.F1205F	ASTN1_uc001glb.1_Silent_p.F1205F|ASTN1_uc001gld.1_Silent_p.F1205F	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1213					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						ATCGCCAGGTGAATTCCCCAA	0.473													54	156					0	0	0.003610	0	0
CEP350	9857	broad.mit.edu	37	1	180031445	180031445	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:180031445C>T	uc001gnt.2	+	26	5736	c.5353C>T	c.(5353-5355)CGA>TGA	p.R1785*	CEP350_uc009wxl.2_Nonsense_Mutation_p.R1784*	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	1785	Potential.					centrosome|nucleus|spindle				ovary(4)	4						AGAAAAGATCCGACAGACCAC	0.383													15	17					0	0	0.008871	0	0
QSOX1	5768	broad.mit.edu	37	1	180163448	180163448	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:180163448C>T	uc001gnz.2	+	11	1464	c.1389C>T	c.(1387-1389)TCC>TCT	p.S463S	QSOX1_uc001gny.2_Silent_p.S463S|QSOX1_uc001goa.2_Silent_p.S463S|QSOX1_uc001goc.2_Silent_p.S5S	NM_002826	NP_002817	O00391	QSOX1_HUMAN	quiescin Q6 sulfhydryl oxidase 1 isoform a	463	ERV/ALR sulfhydryl oxidase.				cell redox homeostasis|protein thiol-disulfide exchange	extracellular space|integral to Golgi membrane	flavin-linked sulfhydryl oxidase activity			ovary(1)|central_nervous_system(1)	2						CTGCTGCCTCCATGCACCGGG	0.622													46	116					0	0	0.003610	0	0
CRB1	23418	broad.mit.edu	37	1	197396716	197396716	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:197396716C>T	uc001gtz.2	+	7	2396	c.2261C>T	c.(2260-2262)GCT>GTT	p.A754V	CRB1_uc010poz.1_Missense_Mutation_p.A685V|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.A642V|CRB1_uc010ppb.1_Intron|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Missense_Mutation_p.A235V|CRB1_uc001gub.1_Missense_Mutation_p.A403V	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	754	Extracellular (Potential).|Laminin G-like 2.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TTACTTCTAGCTTTGGAAAAC	0.438													9	46					0	0	0.001855	0	0
LHX9	56956	broad.mit.edu	37	1	197890587	197890587	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:197890587G>A	uc001guk.1	+	3	968	c.531G>A	c.(529-531)AAG>AAA	p.K177K	LHX9_uc001gui.1_Silent_p.K168K|LHX9_uc001guj.1_Silent_p.K183K	NM_020204	NP_064589	Q9NQ69	LHX9_HUMAN	LIM homeobox 9 isoform 1	177	LIM zinc-binding 2.				motor axon guidance|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						TCGGCATGAAGGACAGCCTGG	0.617													32	97					0	0	0.006230	0	0
PTPRC	5788	broad.mit.edu	37	1	198672472	198672472	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:198672472G>A	uc001gur.1	+	7	803	c.623G>A	c.(622-624)GGA>GAA	p.G208E	PTPRC_uc001gus.1_Missense_Mutation_p.G160E|PTPRC_uc001gut.1_Missense_Mutation_p.G47E|PTPRC_uc009wze.1_Missense_Mutation_p.G96E|PTPRC_uc009wzf.1_Missense_Mutation_p.G96E|PTPRC_uc010ppg.1_Missense_Mutation_p.G144E|PTPRC_uc001guu.1_Missense_Mutation_p.G251E|PTPRC_uc001guv.1_RNA|PTPRC_uc001guw.1_RNA	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	208	Extracellular (Potential).				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						AGCCCTTCTGGAAGCGCTGTC	0.438													64	163					0	0	0.003610	0	0
MYBPH	4608	broad.mit.edu	37	1	203138068	203138068	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:203138068C>T	uc001gzh.1	-	9	1442	c.1383G>A	c.(1381-1383)GGG>GGA	p.G461G	FMOD_uc010pqi.1_Intron	NM_004997	NP_004988	Q13203	MYBPH_HUMAN	myosin binding protein H	461	Ig-like C2-type 2.				cell adhesion|regulation of striated muscle contraction	myosin filament	structural constituent of muscle				0			BRCA - Breast invasive adenocarcinoma(75;0.153)	Colorectal(1306;0.0306)		CAGATGCCTCCCCCAGCACAT	0.582													98	228					0	0	0.003610	0	0
CR2	1380	broad.mit.edu	37	1	207651391	207651391	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:207651391C>T	uc001hfw.2	+	15	2981	c.2887C>T	c.(2887-2889)CCT>TCT	p.P963S	CR2_uc001hfv.2_Missense_Mutation_p.P1022S|CR2_uc009xch.2_Missense_Mutation_p.P901S	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	963	Sushi 15.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						CCAATGGAACCCTCCCCTGGC	0.532													11	68					0	0	0.002450	0	0
TRAF3IP3	80342	broad.mit.edu	37	1	209936175	209936175	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:209936175G>C	uc001hho.2	+	5	801	c.511G>C	c.(511-513)GAA>CAA	p.E171Q	TRAF3IP3_uc001hhl.2_Missense_Mutation_p.E151Q|TRAF3IP3_uc001hhm.1_Missense_Mutation_p.E171Q|TRAF3IP3_uc001hhn.2_Missense_Mutation_p.E151Q|TRAF3IP3_uc009xcr.2_Missense_Mutation_p.E171Q	NM_025228	NP_079504	Q9Y228	T3JAM_HUMAN	TRAF3-interacting JNK-activating modulator	171	Cytoplasmic (Potential).					integral to membrane	protein binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.045)		GACAAAGGCAGAAGGACCAAC	0.483													45	185					0	0	0.003610	0	0
IRF6	3664	broad.mit.edu	37	1	209968716	209968716	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:209968716C>T	uc001hhq.1	-	5	690	c.427G>A	c.(427-429)GAA>AAA	p.E143K	IRF6_uc010psm.1_Missense_Mutation_p.E48K|IRF6_uc009xct.1_Missense_Mutation_p.E143K	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	143					cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		TCATCTTCTTCATCCACATCA	0.532										HNSCC(57;0.16)			79	64					0	0	0.003610	0	0
CENPF	1063	broad.mit.edu	37	1	214814560	214814560	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:214814560C>T	uc001hkm.2	+	12	3053	c.2879C>T	c.(2878-2880)TCC>TTC	p.S960F		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	960	Potential.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		GAAATGAGTTCCATCATTTCT	0.348													30	20					0	0	0.008361	0	0
ESRRG	2104	broad.mit.edu	37	1	216850459	216850459	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:216850459G>A	uc001hkw.1	-	2	597	c.431C>T	c.(430-432)TCA>TTA	p.S144L	ESRRG_uc001hky.1_Missense_Mutation_p.S121L|ESRRG_uc009xdp.1_Missense_Mutation_p.S121L|ESRRG_uc001hkz.1_Missense_Mutation_p.S121L|ESRRG_uc010puc.1_Missense_Mutation_p.S121L|ESRRG_uc001hla.1_Missense_Mutation_p.S121L|ESRRG_uc001hlb.1_Missense_Mutation_p.S121L|ESRRG_uc010pud.1_Intron|ESRRG_uc001hlc.1_Missense_Mutation_p.S121L|ESRRG_uc001hld.1_Missense_Mutation_p.S121L|ESRRG_uc001hkx.1_Missense_Mutation_p.S149L|ESRRG_uc009xdo.1_Missense_Mutation_p.S121L|ESRRG_uc001hle.1_Missense_Mutation_p.S121L	NM_001438	NP_001429	P62508	ERR3_HUMAN	estrogen-related receptor gamma isoform 1	144	Nuclear receptor.|NR C4-type.				positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	AF-2 domain binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|kidney(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0358)|all cancers(67;0.0693)|GBM - Glioblastoma multiforme(131;0.0713)	Diethylstilbestrol(DB00255)	GGCTTCACATGATGCTACCCC	0.488													45	108					0	0	0.003610	0	0
OBSCN	84033	broad.mit.edu	37	1	228505801	228505802	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:228505801_228505802GG>AA	uc009xez.1	+	53	14102_14103	c.14058_14059GG>AA	c.(14056-14061)ACGGCA>ACAACA	p.A4687T	OBSCN_uc001hsn.2_Missense_Mutation_p.A4687T	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4687	Ig-like 47.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AGGGCTTCACGGCAGAAGACCA	0.639													39	91					0	0	0.004672	0	0
RYR2	6262	broad.mit.edu	37	1	237802343	237802343	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:237802343C>T	uc001hyl.1	+	46	7077	c.6957C>T	c.(6955-6957)GTC>GTT	p.V2319V		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2319	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			ATGCAAATGTCGTGGTGAGAT	0.413													14	51					0	0	0.010504	0	0
RYR2	6262	broad.mit.edu	37	1	237886483	237886483	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:237886483G>A	uc001hyl.1	+	74	10730	c.10610G>A	c.(10609-10611)AGG>AAG	p.R3537K	RYR2_uc010pxz.1_Missense_Mutation_p.R492K	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3537					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TTACCAAACAGGACTGATGAT	0.398													38	113					0	0	0.008740	0	0
FMN2	56776	broad.mit.edu	37	1	240286558	240286558	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:240286558C>T	uc010pyd.1	+	2	1920	c.1695C>T	c.(1693-1695)ATC>ATT	p.I565I	FMN2_uc010pye.1_Silent_p.I565I	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	565					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding	p.I708I(1)		ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			GCTCCCGGATCATTGCCATGG	0.498													30	77					0	0	0.002096	0	0
ZNF695	57116	broad.mit.edu	37	1	247163358	247163358	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:247163358C>T	uc009xgu.2	-	2	167	c.22G>A	c.(22-24)GAT>AAT	p.D8N	ZNF695_uc001ica.2_RNA|ZNF695_uc001icb.1_RNA|ZNF695_uc009xgt.1_RNA|ZNF695_uc001ibx.2_Missense_Mutation_p.D8N|ZNF695_uc001iby.2_RNA|ZNF695_uc001icc.2_Missense_Mutation_p.D8N	NM_020394	NP_065127	Q8IW36	ZN695_HUMAN	zinc finger protein SBZF3	8	KRAB.				regulation of transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0	all_cancers(71;4.01e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			AGAGCCACATCCCTGAATGCC	0.453													30	31					0	0	0.002445	0	0
OR2M5	127059	broad.mit.edu	37	1	248308966	248308966	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:248308966G>A	uc010pze.1	+	1	517	c.517G>A	c.(517-519)GAA>AAA	p.E173K		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			TGGGTCTCGGGAAATAGCCCA	0.428													108	402					0	0	0.003610	0	0
OR2G6	391211	broad.mit.edu	37	1	248685728	248685728	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr1:248685728C>T	uc001ien.1	+	1	781	c.781C>T	c.(781-783)CAA>TAA	p.Q261*		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	261	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CATGTACCTTCAACCGGCCAA	0.443													68	57					0	0	0.003610	0	0
TUBAL3	79861	broad.mit.edu	37	10	5436157	5436157	+	Missense_Mutation	SNP	G	A	A	rs149499697	byFrequency	TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr10:5436157G>A	uc001ihy.2	-	4	704	c.664C>T	c.(664-666)CGT>TGT	p.R222C	TUBAL3_uc001ihz.2_Missense_Mutation_p.R182C	NM_024803	NP_079079	A6NHL2	TBAL3_HUMAN	tubulin, alpha-like 3	222					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1						CCGAGTTTACGATGGCATATA	0.522													21	42					0	0	0.001882	0	0
NEBL	10529	broad.mit.edu	37	10	21115411	21115411	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr10:21115411C>T	uc001iqi.2	-	18	2231	c.1834G>A	c.(1834-1836)GAA>AAA	p.E612K	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	612	Nebulin 17.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TTCACTCGTTCGATCTCTGGG	0.323													33	88					0	0	0.005524	0	0
GPR158	57512	broad.mit.edu	37	10	25887166	25887166	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr10:25887166G>A	uc001isj.2	+	11	2671	c.2611G>A	c.(2611-2613)GAG>AAG	p.E871K	GPR158_uc001isk.2_Missense_Mutation_p.E246K	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	871	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						TGAGTCCACGGAGTCGGTGCC	0.493													27	52					0	0	0.007291	0	0
APBB1IP	54518	broad.mit.edu	37	10	26785232	26785232	+	Splice_Site	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr10:26785232G>A	uc001iss.2	+	4	394	c.73_splice	c.e4-1	p.S25_splice	APBB1IP_uc001isr.2_Splice_Site_p.S25_splice|APBB1IP_uc009xks.1_Splice_Site_p.S25_splice	NM_019043	NP_061916	Q7Z5R6	AB1IP_HUMAN	amyloid beta (A4) precursor protein-binding,						blood coagulation|signal transduction	cytoskeleton|cytosol|focal adhesion|lamellipodium				lung(4)|skin(2)|central_nervous_system(1)	7						TTTTTTCACAGAGTTTAGGAG	0.378													21	56					0	0	0.005443	0	0
YME1L1	10730	broad.mit.edu	37	10	27401036	27401036	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr10:27401036C>A	uc001iti.2	-	20	2374	c.2192G>T	c.(2191-2193)CGA>CTA	p.R731L	YME1L1_uc001itj.2_Missense_Mutation_p.R674L|YME1L1_uc010qdl.1_Missense_Mutation_p.R641L|YME1L1_uc009xkv.2_RNA	NM_139312	NP_647473	Q96TA2	YMEL1_HUMAN	YME1-like 1 isoform 1	731					protein catabolic process|proteolysis	membrane|mitochondrion	ATP binding|metal ion binding|metalloendopeptidase activity|nucleoside-triphosphatase activity			ovary(1)	1						ATGTTTTGCTCGTTCATATGA	0.383													11	27					0.000151284	0.000152408	0.001855	1	0
C10orf68	79741	broad.mit.edu	37	10	33018276	33018276	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr10:33018276C>T	uc001iwn.3	+	10	1190	c.717C>T	c.(715-717)ATC>ATT	p.I239I	C10orf68_uc001iwl.1_Silent_p.I247I|C10orf68_uc001iwm.1_Silent_p.I215I|C10orf68_uc010qei.1_Silent_p.I151I|C10orf68_uc001iwo.3_RNA	NM_024688	NP_078964	Q9H943	CJ068_HUMAN	chromosome 10 open reading frame 68	239										skin(2)|ovary(1)	3						CTTTAGAAATCAAAAAAAAGG	0.318													11	27					0	0	0.001368	0	0
DRGX	644168	broad.mit.edu	37	10	50599297	50599297	+	Silent	SNP	G	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr10:50599297G>T	uc010qgq.1	-	2	60	c.60C>A	c.(58-60)ACC>ACA	p.T20T		NM_001080520	NP_001073989	A6NNA5	DRGX_HUMAN	dorsal root ganglia homeobox	20					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GATTGCCAAAGGTTGCAGTGC	0.572													5	5					2.0095e-06	2.03046e-06	0.001984	1	0
CHAT	1103	broad.mit.edu	37	10	50835827	50835827	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr10:50835827G>A	uc001jhz.2	+	7	1260	c.1107G>A	c.(1105-1107)GTG>GTA	p.V369V	CHAT_uc001jhv.1_Silent_p.V251V|CHAT_uc001jhx.1_Silent_p.V251V|CHAT_uc001jhy.1_Silent_p.V251V|CHAT_uc001jia.2_Silent_p.V251V|CHAT_uc010qgs.1_Silent_p.V251V	NM_020549	NP_065574	P28329	CLAT_HUMAN	choline acetyltransferase isoform 2	369					neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)	3		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	CGGTCCTCGTGAAAGGTCAGC	0.612													7	17					0	0	0.003080	0	0
OGDHL	55753	broad.mit.edu	37	10	50943359	50943359	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr10:50943359C>T	uc001jie.2	-	23	3090	c.2948G>A	c.(2947-2949)GGA>GAA	p.G983E	OGDHL_uc009xog.2_Missense_Mutation_p.G1010E|OGDHL_uc010qgt.1_Missense_Mutation_p.G926E|OGDHL_uc010qgu.1_Missense_Mutation_p.G774E	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	983					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						GTTCCTGTTTCCTGTGGCTGG	0.582													43	59					0	0	0.003610	0	0
AGAP7	653268	broad.mit.edu	37	10	51464851	51464852	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr10:51464851_51464852GG>AA	uc001jio.2	-	7	1730_1731	c.1604_1605CC>TT	c.(1603-1605)TCC>TTT	p.S535F	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron	NM_001077685	NP_001071153	Q5VUJ5	AGAP7_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	535	Arf-GAP.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						CTTCCCTCGTGGACTTTTCTGT	0.554													33	70					0	0	0.004672	0	0
ANK3	288	broad.mit.edu	37	10	61829989	61829989	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr10:61829989C>T	uc001jky.2	-	37	10842	c.10650G>A	c.(10648-10650)GGG>GGA	p.G3550G	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3550					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CTTCATCATCCCCTCGGTTAT	0.428													13	35					0	0	0.002450	0	0
ANK3	288	broad.mit.edu	37	10	61835412	61835412	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr10:61835412C>T	uc001jky.2	-	37	5419	c.5227G>A	c.(5227-5229)GAA>AAA	p.E1743K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1743	Ser-rich.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GAAATTTTTTCCTGTAACGTG	0.418													16	28					0	0	0.004007	0	0
CCAR1	55749	broad.mit.edu	37	10	70513779	70513779	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr10:70513779A>G	uc001joo.2	+	11	1408	c.1289A>G	c.(1288-1290)GAA>GGA	p.E430G	CCAR1_uc001jol.1_RNA|CCAR1_uc001jom.1_Missense_Mutation_p.E235G|CCAR1_uc009xpx.1_Missense_Mutation_p.E404G|CCAR1_uc001jon.1_Missense_Mutation_p.E376G|CCAR1_uc010qiz.1_Missense_Mutation_p.E415G|CCAR1_uc010qja.1_Missense_Mutation_p.E415G|CCAR1_uc010qjb.1_RNA|SNORD98_uc001jop.1_5'Flank	NM_018237	NP_060707	Q8IX12	CCAR1_HUMAN	cell-cycle and apoptosis regulatory protein 1	430					apoptosis|cell cycle|nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm|perinuclear region of cytoplasm	calcium ion binding|nucleic acid binding|protein binding			ovary(6)|large_intestine(1)	7						GAGTCCTTAGAAAAAAATATG	0.383													36	51					0	0	0.003214	0	0
PLCE1	51196	broad.mit.edu	37	10	95791100	95791100	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr10:95791100G>A	uc001kjk.2	+	2	931	c.297G>A	c.(295-297)GCG>GCA	p.A99A	PLCE1_uc010qnx.1_Silent_p.A99A	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	99					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				CAGATTCTGCGAAAAACCTTA	0.388													23	44					0	0	0.003330	0	0
CYP2C18	1562	broad.mit.edu	37	10	96480210	96480210	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr10:96480210G>A	uc001kjv.3	+	6	1203	c.877G>A	c.(877-879)GAT>AAT	p.D293N	CYP2C18_uc001kjw.3_Missense_Mutation_p.D234N|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	293					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		CACTGTAACTGATATGTTTGG	0.393													19	32					0	0	0.001882	0	0
INPP5F	22876	broad.mit.edu	37	10	121586482	121586482	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr10:121586482C>T	uc001leo.2	+	20	2755	c.2589C>T	c.(2587-2589)TTC>TTT	p.F863F	INPP5F_uc001lep.2_Silent_p.F253F	NM_014937	NP_055752	Q9Y2H2	SAC2_HUMAN	inositol polyphosphate-5-phosphatase F	863							phosphoric ester hydrolase activity			ovary(2)	2		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.00205)|BRCA - Breast invasive adenocarcinoma(275;0.158)		CTGATGAATTCCTTACAAATT	0.413													29	55					0	0	0.002096	0	0
TACC2	10579	broad.mit.edu	37	10	123970033	123970033	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr10:123970033C>T	uc001lfv.2	+	9	6453	c.6093C>T	c.(6091-6093)GCC>GCT	p.A2031A	TACC2_uc001lfw.2_Silent_p.A177A|TACC2_uc009xzx.2_Silent_p.A1986A|TACC2_uc010qtv.1_Silent_p.A2035A|TACC2_uc001lfx.2_5'UTR|TACC2_uc001lfy.2_5'UTR|TACC2_uc001lfz.2_Silent_p.A109A|TACC2_uc001lga.2_Silent_p.A109A|TACC2_uc009xzy.2_Silent_p.A109A|TACC2_uc001lgb.2_Silent_p.A66A|TACC2_uc010qtw.1_Silent_p.A126A	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2031						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				AGCCGATAGCCAGCAGTGGGA	0.557													12	38					0	0	0.002450	0	0
TACC2	10579	broad.mit.edu	37	10	123987437	123987437	+	Nonsense_Mutation	SNP	G	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr10:123987437G>T	uc001lfv.2	+	14	8170	c.7810G>T	c.(7810-7812)GAG>TAG	p.E2604*	TACC2_uc001lfw.2_Nonsense_Mutation_p.E750*|TACC2_uc009xzx.2_Nonsense_Mutation_p.E2559*|TACC2_uc010qtv.1_Nonsense_Mutation_p.E2608*|TACC2_uc001lfx.2_Nonsense_Mutation_p.E308*|TACC2_uc001lfy.2_Nonsense_Mutation_p.E304*|TACC2_uc001lfz.2_Nonsense_Mutation_p.E682*|TACC2_uc001lga.2_Nonsense_Mutation_p.E682*|TACC2_uc009xzy.2_Nonsense_Mutation_p.E694*|TACC2_uc001lgb.2_Nonsense_Mutation_p.E639*	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2604						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CCCTAACCAAGAGTCACACTT	0.537													7	112					0.000442599	0.000444566	0.006214	1	0
MKI67	4288	broad.mit.edu	37	10	129899812	129899812	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr10:129899812C>T	uc001lke.2	-	14	9610	c.9415G>A	c.(9415-9417)GGA>AGA	p.G3139R	MKI67_uc001lkf.2_Missense_Mutation_p.G2779R	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	3139					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				TTCCGGGCTCCATCATCTGGA	0.453													43	81					0	0	0.003610	0	0
IFITM3	10410	broad.mit.edu	37	11	319838	319838	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:319838C>T	uc001lpa.2	-	2	503	c.402G>A	c.(400-402)TAG>TAA	p.*134*	uc001loz.2_Intron	NM_021034	NP_066362	Q01628	IFM3_HUMAN	interferon-induced transmembrane protein 3	134					response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane				central_nervous_system(7)	7		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;8.85e-28)|Epithelial(43;5.52e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		GCCTCCTGATCTATCCATAGG	0.577													25	57					0	0	0.007291	0	0
C11orf35	256329	broad.mit.edu	37	11	557047	557047	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:557047C>T	uc001lpx.2	-	8	827	c.764G>A	c.(763-765)GGA>GAA	p.G255E	uc001lpy.2_5'Flank|uc001lpz.2_5'Flank	NM_173573	NP_775844	Q8IXW0	CK035_HUMAN	hypothetical protein LOC256329	255										pancreas(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.18e-28)|Epithelial(43;6.93e-27)|OV - Ovarian serous cystadenocarcinoma(40;6.97e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GGAATGCTTTCCAGAGGACTC	0.667													19	12					0	0	0.003330	0	0
EPS8L2	64787	broad.mit.edu	37	11	720118	720118	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:720118C>T	uc001lqt.2	+	5	469	c.222C>T	c.(220-222)GCC>GCT	p.A74A	EPS8L2_uc010qwj.1_Silent_p.A74A|EPS8L2_uc001lqu.2_Silent_p.A74A|EPS8L2_uc010qwk.1_Silent_p.A74A|EPS8L2_uc001lqv.2_Silent_p.A29A|EPS8L2_uc001lqw.2_5'Flank|EPS8L2_uc001lqx.2_5'Flank	NM_022772	NP_073609	Q9H6S3	ES8L2_HUMAN	epidermal growth factor receptor pathway	74	PID.					cytoplasm				pancreas(1)	1		all_cancers(49;1.24e-08)|all_epithelial(84;1.87e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;4.37e-27)|Epithelial(43;2.81e-26)|OV - Ovarian serous cystadenocarcinoma(40;1.33e-20)|BRCA - Breast invasive adenocarcinoma(625;4.29e-05)|Lung(200;0.0582)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TGGACGACGCCATCCGGAAGC	0.612													12	25					0	0	0.001368	0	0
MUC2	4583	broad.mit.edu	37	11	1093927	1093927	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:1093927C>T	uc001lsx.1	+	33	12859	c.12832C>T	c.(12832-12834)CCT>TCT	p.P4278S		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4278						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CACCACGTCCCCTCCAGGTAA	0.647													12	15					0	0	0.001855	0	0
LOC650368	650368	broad.mit.edu	37	11	3429917	3429917	+	RNA	SNP	T	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:3429917T>G	uc010qxs.1	+	11		c.1016T>G			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						TTTTTGCAGGTGCTTTTCTCA	0.552													18	24					0	0	0.008871	0	0
OR52N5	390075	broad.mit.edu	37	11	5799392	5799392	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:5799392A>T	uc010qzn.1	-	1	473	c.473T>A	c.(472-474)TTC>TAC	p.F158Y	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001922	NP_001001922	Q8NH56	O52N5_HUMAN	olfactory receptor, family 52, subfamily N,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.F158F(1)		skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		ACCCCTCAGGAAGGTGGCAAG	0.483													44	86					0	0	0.003610	0	0
OR56A5	390084	broad.mit.edu	37	11	5988911	5988911	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:5988911G>A	uc010qzu.1	-	1	814	c.814C>T	c.(814-816)CCT>TCT	p.P272S		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	272	Extracellular (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						ACATCCGGAGGAATTCTCTTC	0.517													19	29					0	0	0.005443	0	0
OR10A5	144124	broad.mit.edu	37	11	6867716	6867716	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:6867716C>T	uc001met.1	+	1	803	c.803C>T	c.(802-804)TCT>TTT	p.S268F		NM_178168	NP_835462	Q9H207	O10A5_HUMAN	olfactory receptor, family 10, subfamily A,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TCAAATAATTCTCCTGAGAGC	0.418													63	107					0	0	0.003610	0	0
FOLH1	2346	broad.mit.edu	37	11	49207281	49207281	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:49207281C>T	uc001ngy.2	-	6	1027	c.766G>A	c.(766-768)GGA>AGA	p.G256R	FOLH1_uc001ngz.2_Missense_Mutation_p.G256R|FOLH1_uc009yly.2_Missense_Mutation_p.G241R|FOLH1_uc009ylz.2_Missense_Mutation_p.G241R|FOLH1_uc009yma.2_Intron	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	256	Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	AGGATATTTCCACGCTGGACA	0.468													22	54					0	0	0.007291	0	0
OR4C11	219429	broad.mit.edu	37	11	55371055	55371055	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:55371055C>T	uc010rii.1	-	1	795	c.795G>A	c.(793-795)ATG>ATA	p.M265I		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	265	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CCATCTTGTCCATGGGGAAAG	0.428													36	75					0	0	0.002522	0	0
OR5L2	26338	broad.mit.edu	37	11	55594778	55594778	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:55594778C>T	uc001nhy.1	+	1	84	c.84C>T	c.(82-84)TTC>TTT	p.F28F		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				TCTGCCTCTTCCTGCTGTTCC	0.502										HNSCC(27;0.073)			96	183					0	0	0.003610	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735237	55735237	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:55735237G>A	uc010rit.1	-	1	703	c.703C>T	c.(703-705)CAC>TAC	p.H235Y		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	235	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					ACTATTAGGTGAGATGAGCAG	0.378													15	16					0	0	0.004007	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798741	55798741	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:55798741C>T	uc010riw.1	+	1	847	c.847C>T	c.(847-849)CCC>TCC	p.P283S		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	283	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					TGTTGTATTTCCCATGTTTAA	0.348													12	24					0	0	0.001855	0	0
OR5M11	219487	broad.mit.edu	37	11	56309927	56309927	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:56309927T>A	uc010rjl.1	-	1	807	c.807A>T	c.(805-807)GAA>GAT	p.E269D		NM_001005245	NP_001005245	Q96RB7	OR5MB_HUMAN	olfactory receptor, family 5, subfamily M,	269	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTATTTTAGATTCCTCAACAG	0.408													27	36					0	0	0.006320	0	0
TMX2	51075	broad.mit.edu	37	11	57505492	57505492	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:57505492T>G	uc001nlc.1	+	3	407	c.358T>G	c.(358-360)TGC>GGC	p.C120G	CTNND1_uc001nlf.1_Intron|TMX2_uc001nld.1_Missense_Mutation_p.C26G|TMX2_uc001nle.1_Intron	NM_015959	NP_057043	Q9Y320	TMX2_HUMAN	thioredoxin domain containing 14 isoform 1	120	Helical; (Potential).|Thioredoxin.				cell redox homeostasis	integral to membrane					0						CATCACACTCTGCATAGGTGA	0.403													34	57					0	0	0.004878	0	0
MS4A3	932	broad.mit.edu	37	11	59837684	59837684	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:59837684C>T	uc001nom.2	+	7	751	c.623C>T	c.(622-624)TCC>TTC	p.S208F	MS4A3_uc001non.2_Missense_Mutation_p.S162F|MS4A3_uc001noo.2_Missense_Mutation_p.S85F	NM_006138	NP_006129	Q96HJ5	MS4A3_HUMAN	membrane-spanning 4-domains, subfamily A, member	208	Cytoplasmic (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm	protein binding|receptor activity			ovary(2)|skin(1)	3		all_epithelial(135;0.245)				TAGGAAATTTCCTCACCTCCC	0.368													31	38					0	0	0.004878	0	0
SLC22A12	116085	broad.mit.edu	37	11	64360949	64360949	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:64360949C>T	uc001oam.1	+	3	1326	c.579C>T	c.(577-579)GCC>GCT	p.A193A	SLC22A12_uc009ypr.1_Silent_p.A193A|SLC22A12_uc001oal.1_Intron|SLC22A12_uc009yps.1_Intron|SLC22A12_uc001oan.1_Intron|SLC22A12_uc009ypt.2_Silent_p.A11A	NM_144585	NP_653186	Q96S37	S22AC_HUMAN	urate anion exchanger 1 isoform a	193	Helical; (Potential).				cellular homeostasis|response to drug|urate metabolic process	apical plasma membrane|brush border membrane|integral to membrane	PDZ domain binding|urate transmembrane transporter activity			ovary(1)	1						CTGCCTTCGCCCCTGCCTTCC	0.622													35	58					0	0	0.002836	0	0
SIPA1	6494	broad.mit.edu	37	11	65413713	65413713	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:65413713G>A	uc001ofb.2	+	7	1452	c.1285G>A	c.(1285-1287)GGC>AGC	p.G429S	SIPA1_uc010rom.1_Missense_Mutation_p.G429S|SIPA1_uc001ofd.2_Missense_Mutation_p.G429S	NM_006747	NP_006738	Q96FS4	SIPA1_HUMAN	signal-induced proliferation-associated protein	429	Rap-GAP.				cell proliferation|cytoskeleton organization|intracellular signal transduction|negative regulation of cell adhesion|negative regulation of cell cycle|negative regulation of cell growth	cytosol|endomembrane system|membrane|perinuclear region of cytoplasm	Rap GTPase activator activity				0						GCGCCACATTGGCAACGACAT	0.592													60	126					0	0	0.003610	0	0
MUS81	80198	broad.mit.edu	37	11	65628823	65628823	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:65628823G>A	uc001ofv.3	+	3	621	c.268G>A	c.(268-270)GAC>AAC	p.D90N	CFL1_uc001oft.2_5'Flank|CFL1_uc001ofu.2_5'Flank|MUS81_uc001ofw.3_RNA|MUS81_uc001ofx.3_5'Flank	NM_025128	NP_079404	Q96NY9	MUS81_HUMAN	MUS81 endonuclease homolog	90					DNA recombination|DNA repair	nucleolus	3'-flap endonuclease activity|DNA binding|metal ion binding|protein binding				0				READ - Rectum adenocarcinoma(159;0.166)		TCCCGCAGGTGACCATGCCCC	0.592								Homologous_recombination					4	7					0	0	0.009096	0	0
MUS81	80198	broad.mit.edu	37	11	65629508	65629508	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:65629508G>A	uc001ofv.3	+	4	795	c.442G>A	c.(442-444)GAG>AAG	p.E148K	CFL1_uc001oft.2_5'Flank|MUS81_uc001ofw.3_RNA|MUS81_uc001ofx.3_5'Flank	NM_025128	NP_079404	Q96NY9	MUS81_HUMAN	MUS81 endonuclease homolog	148	Interaction with BLM.				DNA recombination|DNA repair	nucleolus	3'-flap endonuclease activity|DNA binding|metal ion binding|protein binding				0				READ - Rectum adenocarcinoma(159;0.166)		GCTCTACCGGGAGCACCTGGT	0.652								Homologous_recombination					6	6					0	0	0.003080	0	0
TBX10	347853	broad.mit.edu	37	11	67399219	67399219	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:67399219C>T	uc001omp.2	-	8	1103	c.1015G>A	c.(1015-1017)GGG>AGG	p.G339R	NUDT8_uc001omn.2_5'Flank|NUDT8_uc001omo.1_5'Flank	NM_005995	NP_005986	O75333	TBX10_HUMAN	T-box 10	339					anatomical structure morphogenesis|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						CTTGGGATCCCTAGGTGGCTC	0.657													3	1					0	0	0.000602	0	0
FGF19	9965	broad.mit.edu	37	11	69514046	69514046	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:69514046G>A	uc001opf.2	-	3	1098	c.635C>T	c.(634-636)CCC>CTC	p.P212L		NM_005117	NP_005108	O95750	FGF19_HUMAN	fibroblast growth factor 19 precursor	212					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of bile acid biosynthetic process|nervous system development|positive regulation of cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of glucose import|positive regulation of JNK cascade	extracellular region	fibroblast growth factor receptor binding|growth factor activity			skin(1)	1	all_cancers(3;5.53e-114)|all_epithelial(3;1.34e-121)|Breast(3;9.28e-34)|all_lung(4;1.99e-21)|Lung NSC(4;4.65e-21)|Hepatocellular(3;6.15e-15)|Melanoma(5;1.89e-05)|Ovarian(3;0.0348)		Epithelial(3;3.05e-56)|all cancers(3;2.69e-50)|Lung(3;1.13e-16)|LUSC - Lung squamous cell carcinoma(11;3.74e-15)|STAD - Stomach adenocarcinoma(18;0.0278)|LUAD - Lung adenocarcinoma(13;0.0537)			CTCAAAGCTGGGACTCCTCAC	0.597													18	10					0	0	0.001882	0	0
C2CD3	26005	broad.mit.edu	37	11	73809297	73809297	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:73809297A>C	uc001ouu.2	-	16	2963	c.2736T>G	c.(2734-2736)GAT>GAG	p.D912E		NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	912						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					AAATCTTAGCATCTCTAGAGG	0.403													24	44					0	0	0.008361	0	0
FAT3	120114	broad.mit.edu	37	11	92086227	92086227	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:92086227G>A	uc001pdj.3	+	1	966	c.949G>A	c.(949-951)GAA>AAA	p.E317K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	317	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CCTGGCTAAGGAAGGAAAGTG	0.443										TCGA Ovarian(4;0.039)			12	18					0	0	0.003163	0	0
FAT3	120114	broad.mit.edu	37	11	92088438	92088438	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:92088438G>A	uc001pdj.3	+	1	3177	c.3160G>A	c.(3160-3162)GAA>AAA	p.E1054K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1054	Cadherin 10.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ATCTGTAAAGGAAAACTCACG	0.493										TCGA Ovarian(4;0.039)			21	40					0	0	0.003954	0	0
SESN3	143686	broad.mit.edu	37	11	94918597	94918597	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:94918597G>A	uc001pfk.1	-	5	807	c.585C>T	c.(583-585)GTC>GTT	p.V195V	SESN3_uc010rug.1_Silent_p.V56V|SESN3_uc001pfl.2_Silent_p.V195V	NM_144665	NP_653266	P58005	SESN3_HUMAN	sestrin 3	195					cell cycle arrest	nucleus					0		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)		BRCA - Breast invasive adenocarcinoma(274;0.234)		GTGCCAGGAGGACCACAGCAT	0.383													55	26					0	0	0.003610	0	0
MMP27	64066	broad.mit.edu	37	11	102573832	102573833	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:102573832_102573833GG>AA	uc001phd.1	-	3	381_382	c.358_359CC>TT	c.(358-360)CCG>TTG	p.P120L		NM_022122	NP_071405	Q9H306	MMP27_HUMAN	matrix metalloproteinase 27 precursor	120					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(8;0.000843)|all_epithelial(12;0.00362)|Lung NSC(15;0.21)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0509)|Lung(13;0.0696)|LUSC - Lung squamous cell carcinoma(19;0.13)|all cancers(10;0.176)	BRCA - Breast invasive adenocarcinoma(274;0.0151)		TGCCATATCCGGAGTATAGTTT	0.347													28	47					0	0	0.004672	0	0
ROBO3	64221	broad.mit.edu	37	11	124742331	124742331	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:124742331C>T	uc001qbc.2	+	8	1405	c.1213C>T	c.(1213-1215)CCA>TCA	p.P405S		NM_022370	NP_071765	Q96MS0	ROBO3_HUMAN	roundabout, axon guidance receptor, homolog 3	405	Ig-like C2-type 4.|Extracellular (Potential).				axon midline choice point recognition	integral to membrane	receptor activity			breast(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|Breast(109;0.0481)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0296)		CTCAGTGTCTCCAAGAGGCCA	0.612													35	16					0	0	0.002522	0	0
PKNOX2	63876	broad.mit.edu	37	11	125280117	125280117	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr11:125280117C>T	uc001qbu.2	+	8	928	c.614C>T	c.(613-615)TCC>TTC	p.S205F	PKNOX2_uc010saz.1_Missense_Mutation_p.S176F|PKNOX2_uc010sba.1_Missense_Mutation_p.S176F|PKNOX2_uc010sbb.1_Missense_Mutation_p.S141F|PKNOX2_uc001qbv.2_5'Flank	NM_022062	NP_071345	Q96KN3	PKNX2_HUMAN	PBX/knotted 1 homeobox 2	205						nucleus	sequence-specific DNA binding transcription factor activity			ovary(3)	3		Breast(109;0.00234)|all_lung(97;0.0191)|Lung NSC(97;0.0196)|Medulloblastoma(222;0.0447)|all_neural(223;0.116)		BRCA - Breast invasive adenocarcinoma(274;5.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.117)		TCCCCCAATTCCATGTCCGGA	0.572													129	64					0	0	0.003610	0	0
CACNA2D4	93589	broad.mit.edu	37	12	1983817	1983817	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:1983817C>T	uc001qjp.2	-	18	2062	c.1831G>A	c.(1831-1833)GAA>AAA	p.E611K	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Intron	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	611	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		GTACCTGTTTCCCTATTGATC	0.473													13	26					0	0	0.003163	0	0
ACSM4	341392	broad.mit.edu	37	12	7475843	7475843	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:7475843C>T	uc001qsx.1	+	8	1139	c.1139C>T	c.(1138-1140)GCC>GTC	p.A380V		NM_001080454	NP_001073923	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	380					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding				0						ATGATTTGTGCCAATCAGAAA	0.353													9	16					0	0	0.008291	0	0
TAS2R14	50840	broad.mit.edu	37	12	11091546	11091546	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:11091546A>C	uc010shi.1	-	1	261	c.261T>G	c.(259-261)AAT>AAG	p.N87K	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_023922	NP_076411	Q9NYV8	T2R14_HUMAN	taste receptor, type 2, member 14	87	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste		bitter taste receptor activity				0						CTGTCCAGATATTAGTAAGCA	0.368													13	26					0	0	0.001368	0	0
GRIN2B	2904	broad.mit.edu	37	12	14019064	14019064	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:14019064G>A	uc001rbt.2	-	2	258	c.79C>T	c.(79-81)CGT>TGT	p.R27C		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	27	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TTCTGAGAACGAGCTCTGCTG	0.582													24	26					0	0	0.003954	0	0
PTPRO	5800	broad.mit.edu	37	12	15699595	15699595	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:15699595G>A	uc001rcv.1	+	13	2431	c.2257G>A	c.(2257-2259)GAA>AAA	p.E753K	PTPRO_uc001rcw.1_Missense_Mutation_p.E753K|PTPRO_uc001rcx.1_5'UTR|PTPRO_uc001rcy.1_5'UTR|PTPRO_uc001rcz.1_5'UTR|PTPRO_uc001rda.1_5'UTR	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	753	Fibronectin type-III 8.|Extracellular (Potential).			E -> K (in Ref. 1; CAA88425).		integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				TGATTTCTTTGAAGTTTTCTG	0.423													19	31					0	0	0.002780	0	0
TSPAN11	441631	broad.mit.edu	37	12	31116804	31116804	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:31116804T>C	uc010sju.1	+	3	508	c.128T>C	c.(127-129)GTG>GCG	p.V43A	TSPAN11_uc001rjp.2_Missense_Mutation_p.V43A|TSPAN11_uc010sjv.1_Missense_Mutation_p.V33A	NM_001080509	NP_001073978	A1L157	TSN11_HUMAN	tetraspanin 11	43						integral to membrane					0	all_lung(12;3.11e-10)|Lung NSC(12;5.24e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					TGGACCCTGGTGGAGAAGAGT	0.632													9	100					0	0	0.000978	0	0
SLC4A8	9498	broad.mit.edu	37	12	51882614	51882614	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:51882614C>T	uc001rys.1	+	18	2596	c.2418C>T	c.(2416-2418)GTC>GTT	p.V806V	SLC4A8_uc001rym.2_Silent_p.V753V|SLC4A8_uc001ryn.2_Silent_p.V753V|SLC4A8_uc001ryo.2_Silent_p.V753V|SLC4A8_uc010snj.1_Silent_p.V833V|SLC4A8_uc001ryr.2_Silent_p.V806V	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	806	Cytoplasmic (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		TCACAGCCGTCATTATTAACA	0.433													25	50					0	0	0.007291	0	0
SPRYD3	84926	broad.mit.edu	37	12	53459651	53459651	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:53459651T>C	uc001sbt.1	-	11	1315	c.1294A>G	c.(1294-1296)AAA>GAA	p.K432E		NM_032840	NP_116229	Q8NCJ5	SPRY3_HUMAN	SPRY domain containing 3	432										central_nervous_system(1)	1						ACTTTGACTTTCTCCCCGCAG	0.562											OREG0021856	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	120					0	0	0.002780	0	0
DCD	117159	broad.mit.edu	37	12	55039462	55039462	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:55039462C>T	uc001sgj.2	-	3	189	c.127G>A	c.(127-129)GAA>AAA	p.E43K	DCD_uc009znt.2_Missense_Mutation_p.E43K|DCD_uc009znu.2_RNA	NM_053283	NP_444513	P81605	DCD_HUMAN	dermcidin preproprotein	43					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular region	protein binding			ovary(1)	1		Myeloproliferative disorder(1001;0.0255)				CCTGCATTTTCCTTTTGAGCT	0.517													25	52					0	0	0.007291	0	0
KIAA0748	9840	broad.mit.edu	37	12	55356341	55356341	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:55356341G>A	uc001sgn.3	-	9	1451	c.1341C>T	c.(1339-1341)CTC>CTT	p.L447L	KIAA0748_uc001sgl.3_Silent_p.L309L|KIAA0748_uc001sgm.3_Silent_p.L194L|KIAA0748_uc010spb.1_Silent_p.L194L|KIAA0748_uc010spc.1_Silent_p.L309L|KIAA0748_uc010spd.1_Silent_p.L447L|KIAA0748_uc001sgo.3_RNA	NM_001098815	NP_001092285	A2RU30	K0748_HUMAN	hypothetical protein LOC9840	447										ovary(1)|central_nervous_system(1)	2						TCCTGCCCATGAGATTCTTCT	0.502													61	98					0	0	0.003610	0	0
OR9K2	441639	broad.mit.edu	37	12	55524423	55524423	+	Missense_Mutation	SNP	C	T	T	rs148051420		TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:55524423C>T	uc010spe.1	+	1	871	c.871C>T	c.(871-873)CCT>TCT	p.P291S		NM_001005243	NP_001005243	Q8NGE7	OR9K2_HUMAN	olfactory receptor, family 9, subfamily K,	291	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						TGACAGATTTCCTGAGCTGAG	0.463													73	134					0	0	0.003610	0	0
OR10A7	121364	broad.mit.edu	37	12	55615533	55615533	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:55615533C>T	uc010spf.1	+	1	725	c.725C>T	c.(724-726)TCC>TTC	p.S242F		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	242	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						TCTACTTGTTCCTCACACCTC	0.493													20	49					0	0	0.010504	0	0
METTL7B	196410	broad.mit.edu	37	12	56075953	56075953	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:56075953G>A	uc010spr.1	+	1	624	c.415G>A	c.(415-417)GAT>AAT	p.D139N		NM_152637	NP_689850	Q6UX53	MET7B_HUMAN	methyltransferase like 7B precursor	139							methyltransferase activity				0						TGGCTCCATGGATGTGGTGGT	0.577													16	57					0	0	0.004007	0	0
SILV	6490	broad.mit.edu	37	12	56359780	56359780	+	Nonsense_Mutation	SNP	T	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:56359780T>A	uc001sip.2	-	1	47	c.16A>T	c.(16-18)AAA>TAA	p.K6*	CDK2_uc001sit.3_5'Flank|CDK2_uc001siu.3_5'Flank|CDK2_uc010spy.1_5'Flank|SILV_uc001siq.2_Nonsense_Mutation_p.K6*|SILV_uc010spx.1_Nonsense_Mutation_p.K6*|SILV_uc001sir.2_Nonsense_Mutation_p.K6*	NM_006928	NP_008859	P40967	PMEL_HUMAN	silver homolog	6					melanin biosynthetic process|melanosome organization	endoplasmic reticulum membrane|extracellular region|Golgi apparatus|integral to membrane|melanosome|multivesicular body membrane|plasma membrane	protein binding				0						AGGCATCTTTTTAGCACCAGA	0.498													95	153					0	0	0.003610	0	0
MYO1A	4640	broad.mit.edu	37	12	57424006	57424006	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:57424006G>A	uc001smw.3	-	24	2822	c.2579C>T	c.(2578-2580)TCA>TTA	p.S860L	MYO1A_uc010sqz.1_Missense_Mutation_p.S698L|MYO1A_uc009zpd.2_Missense_Mutation_p.S860L	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	860					sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						CTGGGGATATGAAGCCTTCTT	0.433													28	52					0	0	0.002836	0	0
MYO1A	4640	broad.mit.edu	37	12	57441839	57441839	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:57441839G>A	uc001smw.3	-	3	407	c.164C>T	c.(163-165)CCC>CTC	p.P55L	MYO1A_uc010sqz.1_5'Flank|MYO1A_uc009zpd.2_Missense_Mutation_p.P55L	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	55	Myosin head-like.				sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						CCCATAGATGGGAAGCTGTTG	0.507													18	46					0	0	0.003954	0	0
KCNC2	3747	broad.mit.edu	37	12	75442084	75442084	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:75442084G>A	uc001sxg.1	-	4	2173	c.1629C>T	c.(1627-1629)GAC>GAT	p.D543D	KCNC2_uc009zry.2_Silent_p.D543D|KCNC2_uc001sxe.2_Silent_p.D543D|KCNC2_uc001sxf.2_Intron|KCNC2_uc010stw.1_Intron	NM_139137	NP_631875	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	543	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						CTGTACTGTCGTCACCTGATA	0.493													24	28					0	0	0.003330	0	0
MGAT4C	25834	broad.mit.edu	37	12	86373538	86373538	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:86373538C>T	uc001tai.3	-	8	2216	c.966G>A	c.(964-966)GAG>GAA	p.E322E	MGAT4C_uc001tal.3_Silent_p.E322E|MGAT4C_uc001taj.3_Silent_p.E322E|MGAT4C_uc001tak.3_Silent_p.E322E|MGAT4C_uc010sum.1_Silent_p.E346E|MGAT4C_uc001tah.3_Silent_p.E322E	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	322	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						TCAGCTTATTCTCCGTCCCTT	0.403													46	51					0	0	0.003610	0	0
C12orf50	160419	broad.mit.edu	37	12	88390262	88390262	+	Missense_Mutation	SNP	C	T	T	rs146964348	byFrequency	TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:88390262C>T	uc001tam.1	-	6	538	c.370G>A	c.(370-372)GAA>AAA	p.E124K	C12orf50_uc001tan.2_Missense_Mutation_p.E178K	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	124										skin(2)|ovary(1)	3						CTGTAGTATTCCCCTAATCAA	0.313													25	33					0	0	0.006320	0	0
BTBD11	121551	broad.mit.edu	37	12	108035866	108035866	+	Splice_Site	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:108035866G>A	uc001tmk.1	+	14	3362	c.2841_splice	c.e14-1	p.R947_splice	BTBD11_uc001tmj.2_Splice_Site_p.R947_splice|BTBD11_uc001tml.1_Splice_Site_p.R484_splice|BTBD11_uc001tmm.1_Splice_Site_p.R26_splice	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a							integral to membrane	DNA binding			skin(2)|ovary(1)	3						TCCTTGTTCAGGTTCAAAGCA	0.438													23	73					0	0	0.006320	0	0
SELPLG	6404	broad.mit.edu	37	12	109017245	109017245	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:109017245C>T	uc001tni.2	-	2	999	c.839G>A	c.(838-840)AGA>AAA	p.R280K	SELPLG_uc001tnh.2_Missense_Mutation_p.R270K|SELPLG_uc010sxe.1_Missense_Mutation_p.R296K	NM_003006	NP_002997	Q14242	SELPL_HUMAN	selectin P ligand	280	Extracellular (Potential).				blood coagulation|cellular response to interleukin-6	integral to plasma membrane|membrane fraction	bacterial cell surface binding|receptor binding				0						GAACAGACCTCTTTTGGTAGT	0.572													16	28					0	0	0.004990	0	0
IQCD	115811	broad.mit.edu	37	12	113645372	113645372	+	Silent	SNP	A	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:113645372A>T	uc001tuv.1	-	2	1022	c.600T>A	c.(598-600)ACT>ACA	p.T200T	IQCD_uc001tuu.2_Silent_p.T200T	NM_138451	NP_612460	Q96DY2	IQCD_HUMAN	IQ motif containing D	200										ovary(1)	1						CCATGGGACTAGTGAGTAGTT	0.438													25	57					0	0	0.002096	0	0
LHX5	64211	broad.mit.edu	37	12	113909269	113909269	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:113909269A>G	uc001tvj.1	-	1	609	c.35T>C	c.(34-36)ATC>ACC	p.I12T		NM_022363	NP_071758	Q9H2C1	LHX5_HUMAN	LIM homeobox protein 5	12	LIM zinc-binding 1.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GCGGTCGAGGATGGGCCGCTC	0.667													6	11					0	0	0.001984	0	0
TBX5	6910	broad.mit.edu	37	12	114832644	114832645	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:114832644_114832645CC>TT	uc001tvo.2	-	6	1059_1060	c.564_565GG>AA	c.(562-567)GCGGAT>GCAAAT	p.D189N	TBX5_uc001tvp.2_Missense_Mutation_p.D189N|TBX5_uc001tvq.2_Missense_Mutation_p.D139N|TBX5_uc010syv.1_Missense_Mutation_p.D189N	NM_181486	NP_852259	Q99593	TBX5_HUMAN	T-box 5 isoform 1	189	T-box.				cardiac left ventricle formation|cell migration involved in coronary vasculogenesis|cell-cell signaling|embryonic arm morphogenesis|induction of apoptosis|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|pericardium development|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|ventricular septum development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(6)|pancreas(1)|skin(1)	8	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0893)		TTATTTTCATCCGCTTTCACGA	0.366													82	176					0	0	0.004672	0	0
NOS1	4842	broad.mit.edu	37	12	117660637	117660637	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:117660637G>A	uc001twm.1	-	26	4544	c.3858C>T	c.(3856-3858)TTC>TTT	p.F1286F		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	1286					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GCCGGCACCCGAAGACCAGGA	0.582													36	62					0	0	0.004878	0	0
CCDC60	160777	broad.mit.edu	37	12	119954500	119954500	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:119954500G>A	uc001txe.2	+	8	1421	c.956G>A	c.(955-957)AGA>AAA	p.R319K	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	319										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		GGGATGCAAAGAAAAGCACCC	0.383													17	31					0	0	0.001882	0	0
CCDC60	160777	broad.mit.edu	37	12	119968833	119968833	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:119968833G>A	uc001txe.2	+	13	1981	c.1516G>A	c.(1516-1518)GAA>AAA	p.E506K	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	506										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		GAGGATTTGGGAACTGTGCTC	0.502													38	68					0	0	0.003610	0	0
HNF1A	6927	broad.mit.edu	37	12	121431498	121431498	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:121431498G>A	uc001tzg.2	+	3	725	c.702G>A	c.(700-702)GAG>GAA	p.E234E	HNF1A_uc001tze.1_Silent_p.E234E|HNF1A_uc001tzf.2_Silent_p.E234E|HNF1A_uc010szn.1_Silent_p.E234E	NM_000545	NP_000536	P20823	HNF1A_HUMAN	hepatic nuclear factor-1-alpha	234	Homeobox; HNF1-type.				glucose homeostasis|glucose import|insulin secretion|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|renal glucose absorption	cytoplasm|nucleus|protein complex	DNA binding|protein dimerization activity|protein heterodimerization activity|protein homodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			liver(92)|large_intestine(15)|endometrium(6)|breast(2)|lung(1)	116	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CGCTAGTGGAGGAGTGCAATA	0.587									Hepatic_Adenoma_Familial_Clustering_of				17	34					0	0	0.001882	0	0
PITPNM2	57605	broad.mit.edu	37	12	123471920	123471920	+	Silent	SNP	G	A	A	rs147908575	byFrequency	TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:123471920G>A	uc001uej.1	-	22	3460	c.3321C>T	c.(3319-3321)TTC>TTT	p.F1107F	PITPNM2_uc001uek.1_Silent_p.F1101F	NM_020845	NP_065896	Q9BZ72	PITM2_HUMAN	phosphatidylinositol transfer protein,	1107					metabolic process|transport	endomembrane system|integral to membrane|intracellular membrane-bounded organelle	calcium ion binding|lipid binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.55e-05)|Epithelial(86;8.43e-05)|BRCA - Breast invasive adenocarcinoma(302;0.123)		TGAAGACCACGAACTCTGTGC	0.647													15	21					0	0	0.003163	0	0
TPTE2	93492	broad.mit.edu	37	13	20024244	20024244	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr13:20024244G>A	uc001umd.2	-	14	1156	c.945C>T	c.(943-945)ATC>ATT	p.I315I	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Silent_p.I204I|TPTE2_uc001ume.2_Silent_p.I238I|TPTE2_uc009zzm.2_Intron|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	315	Phosphatase tensin-type.					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		GAATCGCTACGATGTTTTCAA	0.313													13	29					0	0	0.002836	0	0
MTUS2	23281	broad.mit.edu	37	13	30075288	30075288	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr13:30075288G>A	uc001usl.3	+	13	3941	c.3883G>A	c.(3883-3885)GAA>AAA	p.E1295K	MTUS2_uc001usm.3_Missense_Mutation_p.E264K|MTUS2_uc010aau.2_Missense_Mutation_p.E174K|MTUS2_uc010tdq.1_Missense_Mutation_p.E47K	NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	1285	Potential.					cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						ACAGCAGAACGAAGACCTCAA	0.428													21	36					0	0	0.003330	0	0
RXFP2	122042	broad.mit.edu	37	13	32339209	32339209	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr13:32339209G>C	uc001utt.2	+	4	426	c.355G>C	c.(355-357)GAA>CAA	p.E119Q	RXFP2_uc010aba.2_Missense_Mutation_p.E102Q	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	119	Extracellular (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		TGACTGCAAAGAAACTGAATT	0.318													7	108					0	0	0.003080	0	0
STARD13	90627	broad.mit.edu	37	13	33703751	33703751	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr13:33703751C>T	uc001uuw.2	-	5	1189	c.1063G>A	c.(1063-1065)GAG>AAG	p.E355K	STARD13_uc001uuu.2_Missense_Mutation_p.E347K|STARD13_uc001uuv.2_Missense_Mutation_p.E237K|STARD13_uc001uux.2_Missense_Mutation_p.E320K|STARD13_uc010tec.1_RNA|STARD13_uc010abh.1_Missense_Mutation_p.E340K	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	355					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		TTGTTGGCCTCGTGGCACTTG	0.632													35	82					0	0	0.006230	0	0
FREM2	341640	broad.mit.edu	37	13	39266022	39266022	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr13:39266022G>A	uc001uwv.2	+	1	4850	c.4541G>A	c.(4540-4542)GGA>GAA	p.G1514E		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	1514	Extracellular (Potential).|CSPG 10.				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		GTCACCGATGGACGTAACCCT	0.443													49	78					0	0	0.003610	0	0
LOC220429	220429	broad.mit.edu	37	13	50466990	50466990	+	Missense_Mutation	SNP	T	C	C	rs144184696	by1000genomes	TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr13:50466990T>C	uc001vdk.2	+	1	2446	c.2264T>C	c.(2263-2265)CTG>CCG	p.L755P		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						GTCTGTCCACTGAGGGGTTTT	0.517													4	86					0	0	0.000602	0	0
FARP1	10160	broad.mit.edu	37	13	99030132	99030132	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr13:99030132T>G	uc001vnj.2	+	6	792	c.456T>G	c.(454-456)AAT>AAG	p.N152K	FARP1_uc001vnh.2_Missense_Mutation_p.N152K	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	152	FERM.				regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			TGACGTGTAATGACACCAGCG	0.473													24	68					0	0	0.007291	0	0
CLYBL	171425	broad.mit.edu	37	13	100511292	100511292	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr13:100511292G>A	uc001vok.2	+	3	441	c.427G>A	c.(427-429)GAA>AAA	p.E143K	CLYBL_uc010tix.1_Missense_Mutation_p.E143K|CLYBL_uc010tiy.1_Missense_Mutation_p.E143K	NM_206808	NP_996531	Q8N0X4	CLYBL_HUMAN	citrate lyase beta like precursor	143					cellular aromatic compound metabolic process	citrate lyase complex|mitochondrion	citrate (pro-3S)-lyase activity|metal ion binding				0	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					AAGTCCTGAAGAAATCCAGTG	0.512													10	18					0	0	0.000978	0	0
MYO16	23026	broad.mit.edu	37	13	109459056	109459056	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr13:109459056G>A	uc001vqt.1	+	7	831	c.705G>A	c.(703-705)AAG>AAA	p.K235K	MYO16_uc010agk.1_Silent_p.K257K|MYO16_uc001vqu.1_Silent_p.K35K	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	235	ANK 6.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			GTGGCTACAAGGAGGTGGTGT	0.453													25	59					0	0	0.005443	0	0
OR11H12	440153	broad.mit.edu	37	14	19378035	19378035	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr14:19378035C>T	uc010tkp.1	+	1	442	c.442C>T	c.(442-444)CCT>TCT	p.P148S		NM_001013354	NP_001013372	B2RN74	O11HC_HUMAN	olfactory receptor, family 11, subfamily H,	148	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTTGCTCTATCCTAATATCAT	0.448													73	216					0	0	0.003610	0	0
OR4Q3	441669	broad.mit.edu	37	14	20215708	20215708	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr14:20215708G>A	uc010tkt.1	+	1	122	c.122G>A	c.(121-123)GGA>GAA	p.G41E		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATTGTCCTGGGAAACCTCTTG	0.398													62	113					0	0	0.003610	0	0
JUB	84962	broad.mit.edu	37	14	23444071	23444071	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr14:23444071C>A	uc001whz.2	-	6	1775	c.1399G>T	c.(1399-1401)GGC>TGC	p.G467C	JUB_uc001why.2_Missense_Mutation_p.G50C	NM_032876	NP_116265	Q96IF1	JUB_HUMAN	ajuba isoform 1	467	LIM zinc-binding 3.				cell cycle|gene silencing by miRNA|positive regulation of protein complex assembly	cell-cell junction|cytoplasmic mRNA processing body|microtubule organizing center	alpha-catenin binding|zinc ion binding				0	all_cancers(95;4.6e-05)			GBM - Glioblastoma multiforme(265;0.0122)		ATGGGTTGGCCACAGGCTGCA	0.577													39	62					5.73435e-26	5.89074e-26	0.003610	1	0
MYH7	4625	broad.mit.edu	37	14	23901700	23901700	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr14:23901700G>A	uc001wjx.2	-	6	624	c.518C>T	c.(517-519)TCC>TTC	p.S173F		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	173	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GATCAGGATGGACTGGTTTTC	0.587													33	85					0	0	0.006230	0	0
DHRS1	115817	broad.mit.edu	37	14	24761407	24761407	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr14:24761407C>T	uc001woj.1	-	6	906	c.637G>A	c.(637-639)GAT>AAT	p.D213N	DHRS1_uc010aln.1_RNA|DHRS1_uc001wok.2_Missense_Mutation_p.D213N	NM_138452	NP_612461	Q96LJ7	DHRS1_HUMAN	dehydrogenase/reductase (SDR family) member 1	213						endoplasmic reticulum	binding|oxidoreductase activity				0				GBM - Glioblastoma multiforme(265;2.81e-08)|OV - Ovarian serous cystadenocarcinoma(311;0.0442)		AACACAGGATCCTGCAGGACC	0.547													72	117					0	0	0.003610	0	0
FANCM	57697	broad.mit.edu	37	14	45645572	45645572	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr14:45645572T>A	uc001wwd.3	+	14	3714	c.3615T>A	c.(3613-3615)GAT>GAA	p.D1205E	FANCM_uc010anf.2_Missense_Mutation_p.D1179E|FANCM_uc001wwe.3_Missense_Mutation_p.D741E|FANCM_uc010ang.2_Missense_Mutation_p.D419E	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	1205					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						AATCTCGTGATCAGAGAGGTG	0.348								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				29	26					0	0	0.002445	0	0
TXNDC16	57544	broad.mit.edu	37	14	52937374	52937374	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr14:52937374C>T	uc001wzs.2	-	15	1786	c.1337G>A	c.(1336-1338)AGA>AAA	p.R446K	TXNDC16_uc010tqu.1_Missense_Mutation_p.R441K|TXNDC16_uc010aoe.2_RNA	NM_020784	NP_065835	Q9P2K2	TXD16_HUMAN	thioredoxin domain containing 16 isoform 1	446	Thioredoxin.				cell redox homeostasis	extracellular region					0	Breast(41;0.0716)					ACAGTTTATTCTAGTAAGAAG	0.313													26	49					0	0	0.002096	0	0
RTN1	6252	broad.mit.edu	37	14	60074182	60074182	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr14:60074182G>A	uc001xen.1	-	4	2003	c.1794C>T	c.(1792-1794)ATC>ATT	p.I598I	RTN1_uc001xem.1_Silent_p.I178I|RTN1_uc001xek.1_Silent_p.I30I|RTN1_uc001xel.1_RNA|RTN1_uc010apl.1_Silent_p.I15I	NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	598	Reticulon.				neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		CCGTCTGCTTGATGTCCCGCC	0.612													7	12					0	0	0.006214	0	0
SPTB	6710	broad.mit.edu	37	14	65236380	65236380	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr14:65236380C>T	uc001xht.2	-	27	5919	c.5865G>A	c.(5863-5865)CGG>CGA	p.R1955R	SPTB_uc001xhr.2_Silent_p.R1955R|SPTB_uc001xhs.2_Silent_p.R1955R|SPTB_uc001xhu.2_Silent_p.R1955R|SPTB_uc010aqi.2_Silent_p.R616R	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1955	Spectrin 16.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		AGTTCTTGCTCCGGGTTTCAA	0.587													48	107					0	0	0.003610	0	0
SMOC1	64093	broad.mit.edu	37	14	70418950	70418950	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr14:70418950C>T	uc001xls.1	+	2	448	c.195C>T	c.(193-195)TCC>TCT	p.S65S	SMOC1_uc001xlt.1_Silent_p.S65S	NM_022137	NP_071420	Q9H4F8	SMOC1_HUMAN	secreted modular calcium-binding protein 1	65	Kazal-like.				cell differentiation|eye development|limb development|regulation of osteoblast differentiation|signal transduction	basement membrane	calcium ion binding			upper_aerodigestive_tract(1)|pancreas(1)	2				all cancers(60;0.00417)|BRCA - Breast invasive adenocarcinoma(234;0.0119)|OV - Ovarian serous cystadenocarcinoma(108;0.028)		CCTACGAGTCCATGTGTGAGT	0.582													64	97					0	0	0.003610	0	0
MAP3K9	4293	broad.mit.edu	37	14	71267726	71267726	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr14:71267726G>A	uc001xmm.2	-	2	478	c.478C>T	c.(478-480)CGT>TGT	p.R160C	MAP3K9_uc001xml.2_Missense_Mutation_p.R160C	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	160	Protein kinase.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		CAGAAAGCACGATAGACCTTC	0.488													57	74					0	0	0.003610	0	0
DCAF4	26094	broad.mit.edu	37	14	73425459	73425459	+	Silent	SNP	G	A	A	rs139772335		TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr14:73425459G>A	uc001xng.2	+	14	1654	c.1434G>A	c.(1432-1434)GCG>GCA	p.A478A	DCAF4_uc001xnj.2_Silent_p.A472A|DCAF4_uc010ttr.1_Silent_p.A457A|DCAF4_uc001xnh.2_Silent_p.A378A|DCAF4_uc010tts.1_Silent_p.A418A|DCAF4_uc010ttt.1_Silent_p.A264A|DCAF4_uc001xni.2_Silent_p.A308A	NM_015604	NP_056419	Q8WV16	DCAF4_HUMAN	DDB1 and CUL4 associated factor 4 isoform 1	478						CUL4 RING ubiquitin ligase complex				ovary(1)|central_nervous_system(1)|skin(1)	3						CCCGGGGCGCGCCGGGGCTGC	0.632													6	168					0	0	0.001984	0	0
NRXN3	9369	broad.mit.edu	37	14	79454385	79454385	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr14:79454385G>A	uc001xun.2	+	12	2535	c.2044G>A	c.(2044-2046)GAA>AAA	p.E682K	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.E807K	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	1055	EGF-like 3.|Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		CACCTGCCAGGAAGATTCATG	0.438													18	27					0	0	0.007413	0	0
FLRT2	23768	broad.mit.edu	37	14	86088638	86088638	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr14:86088638G>A	uc001xvr.2	+	2	1547	c.780G>A	c.(778-780)CAG>CAA	p.Q260Q	FLRT2_uc010atd.2_Silent_p.Q260Q	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	260	Extracellular (Potential).|LRR 9.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		TCTATTTGCAGGACAACCAGA	0.488													54	90					0	0	0.003610	0	0
SPATA7	55812	broad.mit.edu	37	14	88904239	88904239	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr14:88904239G>A	uc001xwq.2	+	12	1424	c.1273G>A	c.(1273-1275)GAA>AAA	p.E425K	SPATA7_uc001xwr.2_Missense_Mutation_p.E393K|SPATA7_uc001xws.2_Missense_Mutation_p.E361K|SPATA7_uc001xwt.2_Missense_Mutation_p.E319K|SPATA7_uc001xwu.2_Missense_Mutation_p.E81K	NM_018418	NP_060888	Q9P0W8	SPAT7_HUMAN	spermatogenesis-associated protein 7 isoform a	425					response to stimulus|visual perception					ovary(1)	1						CACATCGGAGGAAAACTCGGT	0.353													34	63					0	0	0.003610	0	0
EML5	161436	broad.mit.edu	37	14	89154722	89154722	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr14:89154722A>C	uc001xxg.2	-	19	2821	c.2635T>G	c.(2635-2637)TTT>GTT	p.F879V	EML5_uc001xxh.1_Intron	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	879	WD 14.					cytoplasm|microtubule				ovary(3)	3						GTTCCAGAAAAAGCCATCTCT	0.443													110	177					0	0	0.003610	0	0
LGMN	5641	broad.mit.edu	37	14	93180791	93180791	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr14:93180791G>A	uc001yav.2	-	7	736	c.410C>T	c.(409-411)CCC>CTC	p.P137L	LGMN_uc001yat.2_Missense_Mutation_p.P137L|LGMN_uc001yau.2_Missense_Mutation_p.P137L|LGMN_uc001yaw.2_Missense_Mutation_p.P137L|LGMN_uc010aul.2_Missense_Mutation_p.P18L|LGMN_uc001yax.2_Missense_Mutation_p.P137L|LGMN_uc001yay.2_Missense_Mutation_p.P137L	NM_001008530	NP_001008530	Q99538	LGMN_HUMAN	legumain preproprotein	137					hormone biosynthetic process|negative regulation of neuron apoptosis|vitamin D metabolic process	lysosome	cysteine-type endopeptidase activity|protein serine/threonine kinase activity			skin(1)	1		all_cancers(154;0.0706)		COAD - Colon adenocarcinoma(157;0.224)		GTGATCCTGGGGGCCACTGCC	0.388											OREG0022880	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	38					0	0	0.002299	0	0
BTBD7	55727	broad.mit.edu	37	14	93762393	93762393	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr14:93762393C>T	uc001ybo.2	-	2	331	c.5G>A	c.(4-6)GGT>GAT	p.G2D	BTBD7_uc010aur.2_5'Flank|BTBD7_uc010two.1_5'Flank|BTBD7_uc001ybp.2_Intron|BTBD7_uc001ybq.3_5'Flank|BTBD7_uc001ybr.2_Missense_Mutation_p.G2D	NM_001002860	NP_001002860	Q9P203	BTBD7_HUMAN	BTB (POZ) domain containing 7 isoform 1	2										pancreas(1)	1		all_cancers(154;0.08)		Epithelial(152;0.196)|COAD - Colon adenocarcinoma(157;0.212)|all cancers(159;0.223)		TGCATTAGCACCCATTTTCTT	0.448													11	58					0	0	0.001855	0	0
TCL1A	8115	broad.mit.edu	37	14	96180332	96180332	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr14:96180332G>A	uc001yfc.3	-	1	202	c.72C>T	c.(70-72)TTC>TTT	p.F24F	uc001yfd.1_5'Flank|TCL1A_uc001yfb.3_Silent_p.F24F	NM_001098725	NP_001092195	P56279	TCL1A_HUMAN	T-cell leukemia/lymphoma 1A	24					multicellular organismal development	endoplasmic reticulum|microsome				lung(1)	1		all_cancers(154;0.103)		COAD - Colon adenocarcinoma(157;0.205)|Epithelial(152;0.248)		CCAAATACACGAACTTCTCCC	0.657			T	TRA@	T-CLL								47	112					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106174162	106174162	+	RNA	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr14:106174162G>A	uc010tyt.1	-	3632		c.59958C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron					Parts of antibodies, mostly variable regions.												0						TCTTGGACTCGGGGTAGGCAG	0.612													24	41					0	0	0.009535	0	0
ADAM6	8755	broad.mit.edu	37	14	106236226	106236226	+	RNA	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr14:106236226C>T	uc010tyt.1	-	3616		c.57718G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						TCACGTCCACCACCACGCACG	0.592													47	95					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106725137	106725137	+	RNA	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr14:106725137C>T	uc010tyt.1	-	589		c.18377G>A								Parts of antibodies, mostly variable regions.												0						CCGCTGATTTCCCCCCCATCG	0.587													20	64					0	0	0.008871	0	0
SLC12A6	9990	broad.mit.edu	37	15	34549973	34549973	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr15:34549973G>A	uc001zhw.2	-	5	724	c.560C>T	c.(559-561)ACC>ATC	p.T187I	SLC12A6_uc001zhv.2_Missense_Mutation_p.T136I|SLC12A6_uc001zhx.2_Missense_Mutation_p.T172I|SLC12A6_uc001zhy.2_RNA|SLC12A6_uc001zhz.2_RNA|SLC12A6_uc001zia.2_Missense_Mutation_p.T128I|SLC12A6_uc001zib.2_Missense_Mutation_p.T178I|SLC12A6_uc001zic.2_Missense_Mutation_p.T187I|SLC12A6_uc010bau.2_Missense_Mutation_p.T187I|SLC12A6_uc001zid.2_Missense_Mutation_p.T128I|SLC12A6_uc001zhu.2_Intron	NM_133647	NP_598408	Q9UHW9	S12A6_HUMAN	solute carrier family 12, member 6 isoform a	187	Helical; (Potential).				angiogenesis|cellular hypotonic salinity response|potassium ion transport|sodium ion transport	basolateral plasma membrane|integral to membrane	potassium:chloride symporter activity			central_nervous_system(5)|ovary(1)|skin(1)	7		all_lung(180;2.78e-08)		all cancers(64;3.43e-17)|GBM - Glioblastoma multiforme(113;2.6e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0301)	Potassium Chloride(DB00761)	ACCCATGAAGGTACCCATTTG	0.398													10	20					0	0	0.001855	0	0
MGA	23269	broad.mit.edu	37	15	42058294	42058294	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr15:42058294C>T	uc010ucy.1	+	24	8195	c.8014C>T	c.(8014-8016)CCT>TCT	p.P2672S	MGA_uc010ucz.1_Missense_Mutation_p.P2463S	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	2633						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		CAGCAAATATCCTCATGAAGT	0.418													41	53					0	0	0.003610	0	0
EPB42	2038	broad.mit.edu	37	15	43508577	43508577	+	Silent	SNP	G	T	T	rs143575715		TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr15:43508577G>T	uc001zra.3	-	2	385	c.85C>A	c.(85-87)CGG>AGG	p.R29R	EPB42_uc010bde.2_5'UTR|EPB42_uc001zrb.3_Silent_p.R59R|EPB42_uc010udm.1_Silent_p.R29R	NM_001114134	NP_001107606	P16452	EPB42_HUMAN	erythrocyte membrane protein band 4.2 isoform 2	29					erythrocyte maturation|peptide cross-linking|regulation of cell shape	cytoplasm|cytoskeleton|plasma membrane	ATP binding|protein binding|protein-glutamine gamma-glutamyltransferase activity|structural constituent of cytoskeleton			ovary(2)	2		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.7e-07)		AAGAGGCGCCGGGAGCTGAGG	0.582													17	30					5.26018e-13	5.37919e-13	0.001882	1	0
TP53BP1	7158	broad.mit.edu	37	15	43748290	43748290	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr15:43748290G>A	uc001zrs.2	-	12	2649	c.2501C>T	c.(2500-2502)TCC>TTC	p.S834F	TP53BP1_uc010udp.1_Missense_Mutation_p.S834F|TP53BP1_uc001zrq.3_Missense_Mutation_p.S839F|TP53BP1_uc001zrr.3_Missense_Mutation_p.S839F|TP53BP1_uc010udq.1_Missense_Mutation_p.S839F	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	834					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		TAAAGGTAAGGAAGGCTGTGA	0.418								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					53	65					0	0	0.003610	0	0
GLDN	342035	broad.mit.edu	37	15	51689707	51689707	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr15:51689707C>T	uc002aba.2	+	6	898	c.729C>T	c.(727-729)CCC>CCT	p.P243P	GLDN_uc002abb.2_Silent_p.P119P	NM_181789	NP_861454	Q6ZMI3	GLDN_HUMAN	gliomedin	243	Extracellular (Potential).|Pro-rich.				cell differentiation|nervous system development	collagen|integral to membrane|plasma membrane				ovary(2)	2				all cancers(107;0.00194)|GBM - Glioblastoma multiforme(94;0.00942)		CACCTGGGCCCCCAGGCCCTC	0.478													11	12					0	0	0.000978	0	0
UNC13C	440279	broad.mit.edu	37	15	54307357	54307357	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr15:54307357C>T	uc002ack.2	+	1	2257	c.2257C>T	c.(2257-2259)CAA>TAA	p.Q753*		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	753					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		ATACCAAAATCAAAACCAGTT	0.423													6	7					0	0	0.001984	0	0
PDCD7	10081	broad.mit.edu	37	15	65411104	65411104	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr15:65411104G>A	uc002aol.2	-	5	1464	c.1409C>T	c.(1408-1410)CCC>CTC	p.P470L		NM_005707	NP_005698	Q8N8D1	PDCD7_HUMAN	programmed cell death 7	470					apoptosis|induction of apoptosis|response to glucocorticoid stimulus	U12-type spliceosomal complex					0						GGGGAGCGGGGGAAGGACCCA	0.502													20	47					0	0	0.004656	0	0
LBXCOR1	390598	broad.mit.edu	37	15	68118328	68118328	+	Silent	SNP	T	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr15:68118328T>C	uc002aqy.1	+	2	135	c.135T>C	c.(133-135)AGT>AGC	p.S45S		NM_001031807	NP_001026977	P84550	SKOR1_HUMAN	transcriptional corepressor Corl1	54					negative regulation of BMP signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	cytoplasm|dendrite|neuronal cell body|nucleus	nucleotide binding|SMAD binding|transcription repressor activity				0						GCGAGGGCAGTTCCTCGCCCA	0.642													25	38					0	0	0.005443	0	0
CYP1A1	1543	broad.mit.edu	37	15	75015312	75015312	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr15:75015312G>A	uc002ayp.3	-	2	249	c.127C>T	c.(127-129)CCA>TCA	p.P43S	CYP1A1_uc010bjv.2_RNA|CYP1A1_uc010bjw.2_RNA|CYP1A1_uc010bju.2_Intron|CYP1A1_uc010bjx.2_Intron|CYP1A1_uc002ayq.3_Missense_Mutation_p.P43S|CYP1A1_uc010bjy.2_Missense_Mutation_p.P43S|CYP1A1_uc010bjz.1_Intron	NM_000499	NP_000490	P04798	CP1A1_HUMAN	cytochrome P450, family 1, subfamily A,	43					cellular lipid metabolic process|drug metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding|vitamin D 24-hydroxylase activity			ovary(2)|breast(2)|pancreas(1)	5					Arsenic trioxide(DB01169)|Benzphetamine(DB00865)|Bleomycin(DB00290)|Chlorzoxazone(DB00356)|Dacarbazine(DB00851)|Dactinomycin(DB00970)|Esomeprazole(DB00736)|Estrone(DB00655)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Ginseng(DB01404)|Granisetron(DB00889)|Ketoconazole(DB01026)|Menadione(DB00170)|Picrotoxin(DB00466)|Primaquine(DB01087)|Quinidine(DB00908)|Quinine(DB00468)|Thiabendazole(DB00730)	CAGCCCCATGGCCCTGGTGGA	0.572									Endometrial_Cancer_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia				17	28					0	0	0.001882	0	0
CHRNB4	1143	broad.mit.edu	37	15	78921471	78921472	+	Missense_Mutation	DNP	GG	AA	AA	rs142694602	byFrequency	TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr15:78921471_78921472GG>AA	uc002bed.1	-	5	1287_1288	c.1175_1176CC>TT	c.(1174-1176)CCC>CTT	p.P392L	CHRNB4_uc002bee.1_Intron|CHRNB4_uc010blh.1_Missense_Mutation_p.P210L	NM_000750	NP_000741	P30926	ACHB4_HUMAN	cholinergic receptor, nicotinic, beta 4	392	Cytoplasmic (Potential).				regulation of neurotransmitter secretion|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0						CTGCAGAGGCGGGGTTCACAAA	0.629													16	21					0	0	0.004672	0	0
KIAA1024	23251	broad.mit.edu	37	15	79750651	79750651	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr15:79750651C>T	uc002bew.1	+	2	2237	c.2162C>T	c.(2161-2163)TCC>TTC	p.S721F	KIAA1024_uc010unk.1_Missense_Mutation_p.S721F	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	721						integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						GCCACAGAGTCCAAAATTGCC	0.532													24	51					0	0	0.007291	0	0
CPEB1	64506	broad.mit.edu	37	15	83222287	83222287	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr15:83222287G>A	uc002bit.2	-	7	1310	c.1173C>T	c.(1171-1173)TTC>TTT	p.F391F	CPEB1_uc002biq.2_Silent_p.F256F|CPEB1_uc002bir.2_Silent_p.F256F|CPEB1_uc002bis.2_Silent_p.F256F|CPEB1_uc010uod.1_Silent_p.F105F|CPEB1_uc010uoe.1_Silent_p.F334F|CPEB1_uc002biu.2_Silent_p.F358F|CPEB1_uc010uof.1_Silent_p.F256F|CPEB1_uc002biv.2_Silent_p.F331F|CPEB1_uc002bip.2_Silent_p.F105F	NM_001079533	NP_001073001	Q9BZB8	CPEB1_HUMAN	cytoplasmic polyadenylation element binding	331	RRM 1.|Necessary for stress granule assembly and correct localization in dcp1 bodies.				mRNA processing|regulation of translation	cell junction|cytoplasmic mRNA processing body|dendrite|postsynaptic density|postsynaptic membrane	nucleotide binding|RNA binding			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(143;0.229)			CAAAAACACGGAAGGTGTTAA	0.458													51	24					0	0	0.003610	0	0
FANCI	55215	broad.mit.edu	37	15	89820092	89820092	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr15:89820092C>T	uc010bnp.1	+	13	1353	c.1263C>T	c.(1261-1263)CTC>CTT	p.L421L	FANCI_uc002bnm.1_Silent_p.L421L|FANCI_uc002bnn.1_RNA|FANCI_uc002bnp.1_Silent_p.L242L|FANCI_uc002bnq.1_5'Flank	NM_001113378	NP_001106849	Q9NVI1	FANCI_HUMAN	Fanconi anemia, complementation group I isoform	421					cell cycle|DNA repair	nucleoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)					CATGTAAGCTCGGAGCTAATA	0.398								Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				39	151					0	0	0.003610	0	0
IGF1R	3480	broad.mit.edu	37	15	99500479	99500479	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr15:99500479C>T	uc002bul.2	+	21	3962	c.3912C>T	c.(3910-3912)CCC>CCT	p.P1304P	IGF1R_uc010bon.2_Silent_p.P1303P	NM_000875	NP_000866	P08069	IGF1R_HUMAN	insulin-like growth factor 1 receptor precursor	1304	Cytoplasmic (Potential).				anti-apoptosis|immune response|insulin receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of DNA replication|protein autophosphorylation|protein tetramerization	microsome	ATP binding|identical protein binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor receptor activity|metal ion binding|phosphatidylinositol 3-kinase binding			lung(3)|kidney(3)|ovary(1)|central_nervous_system(1)	8	all_cancers(4;4.17e-14)|all_epithelial(3;4.34e-15)|Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		Epithelial(2;1.94e-12)|all cancers(5;6.83e-11)|BRCA - Breast invasive adenocarcinoma(2;2.88e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00261)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Mecasermin(DB01277)	AGAGCGTCCCCCTGGACCCCT	0.677													11	55					0	0	0.001855	0	0
C15orf51	196968	broad.mit.edu	37	15	100331808	100331808	+	RNA	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr15:100331808C>T	uc010urx.1	-	5		c.2384G>A			C15orf51_uc010ury.1_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						TCGGCCCATGCCAAGCAACCC	0.617													80	43					0	0	0.003610	0	0
LASS3	204219	broad.mit.edu	37	15	101031087	101031087	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr15:101031087G>A	uc002bvz.2	-	5	725	c.223C>T	c.(223-225)CGA>TGA	p.R75*	LASS3_uc002bwa.2_Nonsense_Mutation_p.R86*|LASS3_uc002bwb.2_Nonsense_Mutation_p.R75*	NM_178842	NP_849164	Q8IU89	CERS3_HUMAN	LAG1 longevity assurance homolog 3	75	Homeobox.					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4	Lung NSC(78;0.0018)|all_lung(78;0.00278)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.000867)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)			GTAACCTTTCGAACTGTCTCT	0.308													29	96					0	0	0.005524	0	0
RPL3L	6123	broad.mit.edu	37	16	1996725	1996725	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr16:1996725G>A	uc002cnh.2	-	7	899	c.852C>T	c.(850-852)ATC>ATT	p.I284I		NM_005061	NP_005052	Q92901	RL3L_HUMAN	ribosomal protein L3-like	284					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|ribosome	RNA binding|structural constituent of ribosome				0						CGATGCGGAAGATCTGCCAGA	0.632													22	49					0	0	0.005443	0	0
CREBBP	1387	broad.mit.edu	37	16	3777767	3777767	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr16:3777767G>A	uc002cvv.2	-	31	7485	c.7281C>T	c.(7279-7281)GTC>GTT	p.V2427V	CREBBP_uc002cvw.2_Silent_p.V2389V	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	2427					cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		TGGTGTCCCCGACCAGGGACA	0.562			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				80	135					0	0	0.003610	0	0
SRL	6345	broad.mit.edu	37	16	4247874	4247874	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr16:4247874G>A	uc002cvz.3	-	4	315	c.302C>T	c.(301-303)CCG>CTG	p.P101L	SRL_uc002cvy.3_RNA	NM_001098814	NP_001092284	Q86TD4	SRCA_HUMAN	sarcalumenin	560						sarcoplasmic reticulum lumen	GTP binding|GTPase activity			ovary(3)|skin(2)	5						AACACTCCACGGTCCCAGGAA	0.423													34	39					0	0	0.004289	0	0
PPL	5493	broad.mit.edu	37	16	4943309	4943309	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr16:4943309C>T	uc002cyd.1	-	14	1645	c.1555G>A	c.(1555-1557)GAC>AAC	p.D519N		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	519	Spectrin 3.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						TCCTGCCGGTCCAGGTCGCTG	0.662													10	20					0	0	0.001368	0	0
CACNG3	10368	broad.mit.edu	37	16	24373012	24373012	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr16:24373012C>T	uc002dmf.2	+	4	1976	c.776C>T	c.(775-777)TCC>TTC	p.S259F		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	259					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		ACCATCCCTTCCACTGACATC	0.592													46	93					0	0	0.003610	0	0
STX1B	112755	broad.mit.edu	37	16	31004528	31004528	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr16:31004528C>T	uc010cad.2	-	9	821	c.709G>A	c.(709-711)GAA>AAA	p.E237K	STX1B_uc010vfd.1_Missense_Mutation_p.E237K	NM_052874	NP_443106	P61266	STX1B_HUMAN	syntaxin 1B	237	t-SNARE coiled-coil homology.|Cytoplasmic (Potential).				intracellular protein transport|neurotransmitter transport|synaptic transmission	integral to plasma membrane	extracellular-glutamate-gated ion channel activity|SNAP receptor activity				0						ACAGAATGTTCCACGTTGTAC	0.602													96	166					0	0	0.003610	0	0
ABCC12	94160	broad.mit.edu	37	16	48149423	48149423	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr16:48149423G>A	uc002efc.1	-	13	2238	c.1892C>T	c.(1891-1893)TCG>TTG	p.S631L	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	631	ABC transporter 1.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				GTCCACGGCCGACAGGGGGTC	0.637													51	51					0	0	0.003610	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53679654	53679654	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr16:53679654G>A	uc002ehp.2	-	17	2630	c.2566C>T	c.(2566-2568)CTT>TTT	p.L856F	RPGRIP1L_uc002eho.3_Missense_Mutation_p.L856F|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.L856F|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.L856F|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.L856F	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	856	C2 2.				negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				TCTGACTTAAGGTATCGATCC	0.388													51	90					0	0	0.003610	0	0
NLRC5	84166	broad.mit.edu	37	16	57113024	57113024	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr16:57113024C>T	uc002ekk.1	+	44	5369	c.5144C>T	c.(5143-5145)TCC>TTC	p.S1715F	NLRC5_uc010ccr.1_RNA|NLRC5_uc010ccs.1_RNA|NLRC5_uc002eko.1_RNA|NLRC5_uc002ekq.1_Missense_Mutation_p.S257F|NLRC5_uc002ekr.1_Missense_Mutation_p.S602F	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	1715	LRR 24.			S -> F (in Ref. 7; BAB55096/BAB55098).	defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				CTGGATGGATCCCCCCATTTG	0.647													22	81					0	0	0.007291	0	0
NAE1	8883	broad.mit.edu	37	16	66844668	66844668	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr16:66844668C>T	uc002eqf.2	-	14	1119	c.1042G>A	c.(1042-1044)GAA>AAA	p.E348K	NAE1_uc002eqe.2_Missense_Mutation_p.E342K|NAE1_uc002eqg.2_Missense_Mutation_p.E259K|NAE1_uc010cdv.2_Missense_Mutation_p.E351K	NM_003905	NP_003896	Q13564	ULA1_HUMAN	NEDD8 activating enzyme E1 subunit 1 isoform a	348					apoptosis|cell cycle|DNA replication|mitotic cell cycle DNA replication checkpoint|protein neddylation|signal transduction	cytoplasm|insoluble fraction|plasma membrane	catalytic activity|protein heterodimerization activity			ovary(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0914)|Epithelial(162;0.214)	Adenosine triphosphate(DB00171)	TTTGCTTTTTCACGGTAACTA	0.358													45	77					0	0	0.003610	0	0
HYDIN	54768	broad.mit.edu	37	16	70866849	70866849	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr16:70866849C>T	uc002ezr.2	-	80	13926	c.13798G>A	c.(13798-13800)GAG>AAG	p.E4600K	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4601										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CAAAGGCTCTCCTTTCCCACC	0.498													17	20					0	0	0.001882	0	0
ITGAE	3682	broad.mit.edu	37	17	3664730	3664730	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:3664730G>A	uc002fwo.3	-	5	499	c.400C>T	c.(400-402)CGT>TGT	p.R134C		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	134	FG-GAP 2.|Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		GCCTGGGGACGGAGGTCAGGG	0.562													37	55					0	0	0.007835	0	0
USP6	9098	broad.mit.edu	37	17	5039147	5039147	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:5039147C>T	uc002gau.1	+	17	2818	c.588C>T	c.(586-588)TTC>TTT	p.F196F	USP6_uc002gav.1_Silent_p.F196F|USP6_uc010ckz.1_5'UTR|uc002gba.2_5'Flank|uc002gbb.2_5'Flank	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	196	Rab-GAP TBC.				protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						CCGCCTTGTTCCTCCTTTATC	0.617			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								60	112					0	0	0.003610	0	0
FBXO39	162517	broad.mit.edu	37	17	6684090	6684090	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:6684090C>T	uc010vtg.1	+	2	1023	c.903C>T	c.(901-903)ATC>ATT	p.I301I		NM_153230	NP_694962	Q8N4B4	FBX39_HUMAN	F-box protein 39	301										ovary(1)|skin(1)	2						TGGCCCGAATCCTCTTGCAGG	0.527													20	24					0	0	0.010504	0	0
ACADVL	37	broad.mit.edu	37	17	7124308	7124308	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:7124308C>T	uc002gev.2	+	6	559	c.408C>T	c.(406-408)CTC>CTT	p.L136L	DLG4_uc002get.3_5'Flank|DLG4_uc010vto.1_5'Flank|ACADVL_uc010vtp.1_Silent_p.L146L|ACADVL_uc010vtq.1_Silent_p.L182L|ACADVL_uc002gew.2_Silent_p.L114L|ACADVL_uc002gex.2_Silent_p.L60L	NM_000018	NP_000009	P49748	ACADV_HUMAN	acyl-Coenzyme A dehydrogenase, very long chain	136	Catalytic.				energy derivation by oxidation of organic compounds|fatty acid beta-oxidation using acyl-CoA dehydrogenase|negative regulation of fatty acid biosynthetic process|negative regulation of fatty acid oxidation|regulation of cholesterol metabolic process|temperature homeostasis	mitochondrial inner membrane|mitochondrial nucleoid	long-chain-acyl-CoA dehydrogenase activity			ovary(3)	3						GGCAGGGCCTCAAGGAGCTGG	0.612													33	40					0	0	0.007835	0	0
ZBTB4	57659	broad.mit.edu	37	17	7365457	7365457	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:7365457G>A	uc002ghc.3	-	4	3094	c.2844C>T	c.(2842-2844)CTC>CTT	p.L948L	ZBTB4_uc002ghd.3_Silent_p.L948L	NM_001128833	NP_001122305	Q9P1Z0	ZBTB4_HUMAN	zinc finger and BTB domain containing 4	948					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.L948F(1)		skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(1115;3.46e-05)|Myeloproliferative disorder(207;0.0255)		COAD - Colon adenocarcinoma(228;4.1e-06)|READ - Rectum adenocarcinoma(115;0.0642)		GGACCATGTTGAGAGCAACCG	0.602													129	270					0	0	0.003610	0	0
KCNAB3	9196	broad.mit.edu	37	17	7829410	7829410	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:7829410G>A	uc002gjm.1	-	5	416	c.416C>T	c.(415-417)ACC>ATC	p.T139I	KCNAB3_uc010vul.1_RNA	NM_004732	NP_004723	O43448	KCAB3_HUMAN	potassium voltage-gated channel, shaker-related	139						cytoplasm|integral to membrane	oxidoreductase activity|potassium channel regulator activity|voltage-gated potassium channel activity			ovary(1)	1		Prostate(122;0.157)				GTTCCCTAGGGTTCTTTCAGC	0.483													39	62					0	0	0.003610	0	0
MYH4	4622	broad.mit.edu	37	17	10351324	10351324	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:10351324C>T	uc002gmn.2	-	34	4887	c.4776G>A	c.(4774-4776)AGG>AGA	p.R1592R	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1592	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TGAGATGGTTCCTCTTTAGCT	0.423													63	85					0	0	0.003610	0	0
DNAH9	1770	broad.mit.edu	37	17	11554400	11554400	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:11554400G>A	uc002gne.2	+	13	2180	c.2112G>A	c.(2110-2112)CTG>CTA	p.L704L	DNAH9_uc010coo.2_5'UTR	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	704	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TTTCAGTGCTGAAAGAAATGA	0.458													55	114					0	0	0.003610	0	0
DNAH9	1770	broad.mit.edu	37	17	11645550	11645550	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:11645550G>A	uc002gne.2	+	30	6099	c.6031G>A	c.(6031-6033)GAA>AAA	p.E2011K	DNAH9_uc010coo.2_Missense_Mutation_p.E1305K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2011	AAA 1 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GCTGGTGGCAGAAGGATTCAT	0.458													48	82					0	0	0.003610	0	0
ELAC2	60528	broad.mit.edu	37	17	12921031	12921032	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:12921031_12921032GG>AA	uc002gnz.3	-	1	328_329	c.233_234CC>TT	c.(232-234)TCC>TTT	p.S78F	ELAC2_uc010vvp.1_Intron|ELAC2_uc010vvq.1_Missense_Mutation_p.S78F|ELAC2_uc010vvr.1_Missense_Mutation_p.S78F	NM_018127	NP_060597	Q9BQ52	RNZ2_HUMAN	elaC homolog 2 isoform 1	78					tRNA processing	nucleus	endonuclease activity|metal ion binding|protein binding				0						GGTTGAACTCGGAGAAGACGTA	0.708									Hereditary_Prostate_Cancer				15	25					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	17	16734552	16734552	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:16734552G>A	uc010vwr.1	-	4	909	c.467C>T	c.(466-468)GCC>GTC	p.A156V						SubName: Full=cDNA FLJ53570, highly similar to Keratin, type I cytoskeletal 16;																		GCCAGGTGCGGCATCCATCTC	0.592													19	63					0	0	0.007413	0	0
MYO15A	51168	broad.mit.edu	37	17	18022649	18022649	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:18022649G>A	uc010vxh.1	+	2	873	c.535G>A	c.(535-537)GAG>AAG	p.E179K		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	179	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					GTCGGGTGCCGAGATCCTGCG	0.726													18	23					0	0	0.008871	0	0
MAPK7	5598	broad.mit.edu	37	17	19285536	19285536	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:19285536C>T	uc002gvn.2	+	5	2306	c.1920C>T	c.(1918-1920)CCC>CCT	p.P640P	MAPK7_uc002gvo.2_Silent_p.P501P|MAPK7_uc002gvq.2_Silent_p.P640P|MAPK7_uc002gvp.2_Silent_p.P640P|uc010vyt.1_5'Flank	NM_139033	NP_620602	Q13164	MK07_HUMAN	mitogen-activated protein kinase 7 isoform 1	640	May not be required for kinase activity; required to stimulate MEF2C activity (By similarity).|Pro-rich.				cell cycle|cell differentiation|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase activity|protein binding			central_nervous_system(4)|lung(3)|stomach(1)|skin(1)	9	all_cancers(12;2.87e-05)|all_epithelial(12;0.00114)|Hepatocellular(7;0.00345)|Breast(13;0.206)					GCCCTGCACCCCACCCCACTG	0.711													23	33					0	0	0.003330	0	0
Unknown	0	broad.mit.edu	37	17	21730916	21730916	+	Missense_Mutation	SNP	G	T	T	rs111245273	by1000genomes	TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:21730916G>T	uc002gyy.3	+	2	343	c.218G>T	c.(217-219)CGG>CTG	p.R73L						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		GTCCTGCGTCGGAGAGGTGGT	0.552													4	70					3.59834e-05	3.63046e-05	0.001168	1	0
SARM1	23098	broad.mit.edu	37	17	26712202	26712202	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:26712202C>T	uc010crl.1	+	8	1605	c.1538C>T	c.(1537-1539)TCC>TTC	p.S513F	SARM1_uc010waj.1_RNA|SARM1_uc002hbe.1_Missense_Mutation_p.S57F	NM_015077	NP_055892	Q6SZW1	SARM1_HUMAN	sterile alpha and TIR motif containing 1	513	SAM 2.				innate immune response	cytoplasm|intrinsic to membrane	binding|transmembrane receptor activity				0	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		CTGGACCGCTCCCTGCTGCAC	0.706													4	6					0	0	0.000602	0	0
EFCAB5	374786	broad.mit.edu	37	17	28296356	28296356	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:28296356G>A	uc002het.2	+	4	930	c.738G>A	c.(736-738)AAG>AAA	p.K246K	EFCAB5_uc010wbi.1_Intron|EFCAB5_uc010wbj.1_Silent_p.K190K|EFCAB5_uc010wbk.1_Intron|EFCAB5_uc010csd.2_RNA|EFCAB5_uc010cse.2_Silent_p.K125K|EFCAB5_uc010csf.2_Silent_p.K125K	NM_198529	NP_940931	A4FU69	EFCB5_HUMAN	EF-hand calcium binding domain 5 isoform a	246							calcium ion binding			ovary(1)|skin(1)	2						AAGACCTGAAGATATATGTTC	0.338													11	20					0	0	0.001855	0	0
LIG3	3980	broad.mit.edu	37	17	33319026	33319026	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:33319026C>T	uc002hik.1	+	7	1366	c.1258C>T	c.(1258-1260)CTG>TTG	p.L420L	LIG3_uc002hij.2_Silent_p.L420L|LIG3_uc010cth.1_Silent_p.L429L	NM_013975	NP_039269	P49916	DNLI3_HUMAN	ligase III, DNA, ATP-dependent isoform alpha	420					base-excision repair|cell division|DNA ligation involved in DNA repair|DNA replication|reciprocal meiotic recombination|spermatogenesis	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|protein binding|zinc ion binding			skin(3)|lung(2)|ovary(2)|large_intestine(1)|pancreas(1)	9		Ovarian(249;0.17)			Bleomycin(DB00290)	CAAACATGATCTGAAGATGAA	0.443								Other_BER_factors					40	60					0	0	0.003610	0	0
SLFN12	55106	broad.mit.edu	37	17	33749072	33749072	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:33749072C>T	uc002hji.3	-	2	1353	c.976G>A	c.(976-978)GAT>AAT	p.D326N	SLFN12_uc002hjj.3_Missense_Mutation_p.D326N|SLFN12_uc010cts.2_Missense_Mutation_p.D326N	NM_018042	NP_060512	Q8IYM2	SLN12_HUMAN	schlafen family member 12	326							ATP binding			skin(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		ACACGGTTATCTTTCACATGC	0.483													3	74					0	0	0.004672	0	0
DHRS11	79154	broad.mit.edu	37	17	34956603	34956603	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:34956603C>T	uc002hnd.2	+	7	968	c.754C>T	c.(754-756)CAG>TAG	p.Q252*	MRM1_uc002hne.2_5'Flank|MRM1_uc002hnf.2_5'Flank	NM_024308	NP_077284	Q6UWP2	DHR11_HUMAN	short-chain dehydrogenase/reductase precursor	252						extracellular region	binding|oxidoreductase activity				0						TGGAGACATCCAGATGAGGCC	0.612													21	31					0	0	0.005443	0	0
Unknown	0	broad.mit.edu	37	17	37186571	37186571	+	RNA	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:37186571C>T	uc002hrd.1	+	1		c.413C>T								Homo sapiens cDNA FLJ43826 fis, clone TESTI4002703.																		AGCAAGAGTTCCCAGCTGAGC	0.587													4	1					0	0	0.000602	0	0
ZPBP2	124626	broad.mit.edu	37	17	38027004	38027004	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:38027004A>G	uc002hte.2	+	3	329	c.176A>G	c.(175-177)AAG>AGG	p.K59R	ZPBP2_uc002htf.2_Missense_Mutation_p.K37R	NM_199321	NP_955353	Q6X784	ZPBP2_HUMAN	zona pellucida binding protein 2 isoform 2	59					binding of sperm to zona pellucida	extracellular region				ovary(1)	1	Colorectal(19;0.000442)		Lung(15;0.00849)|LUSC - Lung squamous cell carcinoma(15;0.171)			ATGGATTTTAAGCTTTCTAAA	0.279													17	24					0	0	0.007413	0	0
KRT28	162605	broad.mit.edu	37	17	38954593	38954593	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:38954593C>T	uc002hvh.1	-	3	650	c.584G>A	c.(583-585)GGA>GAA	p.G195E		NM_181535	NP_853513	Q7Z3Y7	K1C28_HUMAN	keratin 25D	195	Rod.|Coil 1B.					cytoplasm|intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				TCGCCGTAATCCGTTGATGTC	0.498													37	50					0	0	0.007835	0	0
NFE2L1	4779	broad.mit.edu	37	17	46134783	46134783	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:46134783G>A	uc002imz.3	+	5	1542	c.891G>A	c.(889-891)TTG>TTA	p.L297L	NFE2L1_uc002ina.3_Silent_p.L267L|NFE2L1_uc002inb.3_Silent_p.L267L|NFE2L1_uc010wle.1_Silent_p.L109L|NFE2L1_uc010wlf.1_Silent_p.L141L	NM_003204	NP_003195	Q14494	NF2L1_HUMAN	nuclear factor erythroid 2-like 1	297					anatomical structure morphogenesis|heme biosynthetic process|inflammatory response|transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			skin(1)	1						ACAACCTCTTGTCTCCTCTTC	0.493													5	122					0	0	0.000602	0	0
KIF2B	84643	broad.mit.edu	37	17	51900748	51900748	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:51900748G>A	uc002iua.2	+	1	510	c.354G>A	c.(352-354)ATG>ATA	p.M118I	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	118					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						GGGTTGCGATGATCCCCCAGA	0.607													48	68					0	0	0.003610	0	0
USP32	84669	broad.mit.edu	37	17	58303433	58303433	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:58303433T>A	uc002iyo.1	-	13	1685	c.1399A>T	c.(1399-1401)ACT>TCT	p.T467S	USP32_uc002iyn.1_Missense_Mutation_p.T137S	NM_032582	NP_115971	Q8NFA0	UBP32_HUMAN	ubiquitin specific protease 32	467	DUSP.				protein deubiquitination|ubiquitin-dependent protein catabolic process	Golgi apparatus|membrane	calcium ion binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|breast(2)|large_intestine(1)	5	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;2.02e-11)|all cancers(12;5.23e-10)|Colorectal(3;0.198)			TCAGATGCAGTAGAAATGTTG	0.428													32	85					0	0	0.004878	0	0
ACE	1636	broad.mit.edu	37	17	61566075	61566075	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:61566075G>A	uc002jau.1	+	16	2394	c.2372G>A	c.(2371-2373)CGA>CAA	p.R791Q	ACE_uc002jav.1_Missense_Mutation_p.R217Q|ACE_uc010ddv.1_Missense_Mutation_p.R18Q|ACE_uc010wpj.1_Missense_Mutation_p.R217Q|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Missense_Mutation_p.R101Q	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	791	Extracellular (Potential).|Peptidase M2 2.	Chloride 2.			arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	GAGGGCTGGCGAGACAAGGCG	0.562													39	112					0	0	0.002522	0	0
CD300LD	100131439	broad.mit.edu	37	17	72576216	72576216	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:72576216G>A	uc002jkz.2	-	4	539	c.510C>T	c.(508-510)TTC>TTT	p.F170F		NM_001115152	NP_001108624	Q6UXZ3	CLM4_HUMAN	CD300 molecule-like family member d precursor	170	Helical; (Potential).					integral to membrane|plasma membrane	receptor activity				0						GCTCCAGGAGGAACAGGAACA	0.582													5	14					0	0	0.001984	0	0
DNAH17	8632	broad.mit.edu	37	17	76446418	76446418	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:76446418G>A	uc010dhp.1	-	13	2180	c.1958C>T	c.(1957-1959)CCG>CTG	p.P653L	DNAH17_uc002jvq.2_5'Flank|DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			CTCCGCAGCCGGGCGGTAGTT	0.522													12	24					0	0	0.004990	0	0
C17orf70	80233	broad.mit.edu	37	17	79517323	79517323	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:79517323C>T	uc002kaq.2	-	3	1252	c.1197G>A	c.(1195-1197)CTG>CTA	p.L399L	C17orf70_uc002kao.1_5'Flank|C17orf70_uc010wuq.1_RNA|C17orf70_uc002kap.2_Silent_p.L248L	NM_001109760	NP_001103230	Q0VG06	FP100_HUMAN	Fanconi anemia core complex 100 kDa subunit	399					DNA repair	cytoplasm|intermediate filament cytoskeleton|nucleoplasm	DNA binding			ovary(1)|skin(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0371)			TGCAGATGTTCAGGCTGGCTG	0.632													72	102					0	0	0.003610	0	0
CCDC57	284001	broad.mit.edu	37	17	80059669	80059669	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr17:80059669C>T	uc002kdx.1	-	17	2674	c.2637G>A	c.(2635-2637)AAG>AAA	p.K879K		NM_198082	NP_932348	Q2TAC2	CCD57_HUMAN	coiled-coil domain containing 57	880										ovary(2)	2	Breast(20;0.00285)|all_neural(118;0.0878)|all_lung(278;0.0949)|Lung NSC(278;0.128)|Ovarian(332;0.227)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0253)			GGGCTGCTGTCTTCATCCCTG	0.582													25	36					0	0	0.007291	0	0
LAMA1	284217	broad.mit.edu	37	18	7013944	7013944	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr18:7013944G>A	uc002knm.2	-	23	3327	c.3233C>T	c.(3232-3234)TCC>TTC	p.S1078F	LAMA1_uc010wzj.1_Missense_Mutation_p.S554F	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1078	Laminin EGF-like 12.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GTAACCCAAGGAACACTGATC	0.592													8	15					0	0	0.006214	0	0
CABLES1	91768	broad.mit.edu	37	18	20832950	20832950	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr18:20832950C>T	uc002kuc.2	+	8	1473	c.1473C>T	c.(1471-1473)CCC>CCT	p.P491P	C18orf45_uc010xaq.1_Intron|CABLES1_uc002kub.2_5'UTR|CABLES1_uc002kud.2_Silent_p.P226P	NM_001100619	NP_001094089	Q8TDN4	CABL1_HUMAN	Cdk5 and Abl enzyme substrate 1 isoform 2	491	Interacts with CDK3 (By similarity).				blood coagulation|cell cycle|cell division|regulation of cell cycle|regulation of cell division	cytosol|nucleus	cyclin-dependent protein kinase regulator activity|protein binding			breast(1)	1	all_cancers(21;0.000102)|all_epithelial(16;2.48e-06)|Lung NSC(20;0.00696)|all_lung(20;0.0197)|Colorectal(14;0.0202)|Ovarian(20;0.127)					ACGTGAAGCCCTCGGATCTCA	0.463													14	38					0	0	0.004007	0	0
DSG4	147409	broad.mit.edu	37	18	28983435	28983435	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr18:28983435G>A	uc002kwq.2	+	11	1609	c.1474G>A	c.(1474-1476)GAT>AAT	p.D492N	DSG4_uc002kwr.2_Missense_Mutation_p.D492N	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	492	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TGATATCAATGATTATTGTCC	0.393													12	17					0	0	0.001855	0	0
ASXL3	80816	broad.mit.edu	37	18	31326117	31326117	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr18:31326117C>T	uc010dmg.1	+	12	6360	c.6305C>T	c.(6304-6306)TCC>TTC	p.S2102F	ASXL3_uc002kxq.2_Missense_Mutation_p.S1809F	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	2102					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						AAACAAGTTTCCTATGACCAG	0.413													23	50					0	0	0.005443	0	0
NOL4	8715	broad.mit.edu	37	18	31537435	31537435	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr18:31537435G>T	uc010dmi.2	-	8	1512	c.1283C>A	c.(1282-1284)CCA>CAA	p.P428Q	NOL4_uc010xbs.1_Missense_Mutation_p.P143Q|NOL4_uc002kxr.3_Intron|NOL4_uc010xbt.1_Missense_Mutation_p.P354Q|NOL4_uc010dmh.2_Intron|NOL4_uc010xbu.1_Intron|NOL4_uc002kxt.3_Intron|NOL4_uc010xbv.1_Intron	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	428						nucleolus	RNA binding			ovary(3)	3						CTTAGAGATTGGGACCATTCG	0.478													13	27					7.93312e-07	8.02784e-07	0.002450	1	0
FHOD3	80206	broad.mit.edu	37	18	34340686	34340686	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr18:34340686C>T	uc002kzt.1	+	22	4062	c.3965C>T	c.(3964-3966)CCC>CTC	p.P1322L	FHOD3_uc002kzs.1_Missense_Mutation_p.P1339L|FHOD3_uc010dmz.1_Missense_Mutation_p.P1054L|FHOD3_uc010dnb.1_Intron	NM_025135	NP_079411	Q2V2M9	FHOD3_HUMAN	formin homology 2 domain containing 3	1322					actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding			skin(3)|large_intestine(2)|breast(2)|ovary(1)	8		all_epithelial(2;0.0181)|Colorectal(2;0.0195)				ACCTCGTCCCCCTCCGTGGAG	0.677													17	18					0	0	0.010504	0	0
RIT2	6014	broad.mit.edu	37	18	40503628	40503628	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr18:40503628T>C	uc002lav.2	-	4	508	c.335A>G	c.(334-336)AAG>AGG	p.K112R	RIT2_uc010dnf.2_Missense_Mutation_p.K112R	NM_002930	NP_002921	Q99578	RIT2_HUMAN	Ras-like without CAAX 2	112					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction|synaptic transmission	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			ovary(1)	1						CTCTTTAAACTTGGCAGCCTC	0.517													91	314					0	0	0.003610	0	0
TCEB3B	51224	broad.mit.edu	37	18	44560781	44560781	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr18:44560781C>T	uc002lcr.1	-	1	1208	c.855G>A	c.(853-855)GGG>GGA	p.G285G	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	285					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						CAGCTTGCCCCCCTTCCTTGT	0.607													65	209					0	0	0.003610	0	0
TCEB3B	51224	broad.mit.edu	37	18	44561402	44561402	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr18:44561402G>A	uc002lcr.1	-	1	587	c.234C>T	c.(232-234)CTC>CTT	p.L78L	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	78	TFIIS N-terminal.				regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						TTCGGTCCACGAGCACCAGCT	0.642													11	32					0	0	0.003163	0	0
SERPINB7	8710	broad.mit.edu	37	18	61465848	61465848	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr18:61465848G>A	uc002ljl.2	+	6	561	c.465G>A	c.(463-465)AAG>AAA	p.K155K	SERPINB7_uc002ljm.2_Silent_p.K155K|SERPINB7_uc010xet.1_Silent_p.K138K|SERPINB7_uc010dqg.2_Silent_p.K155K	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	155					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				GCAAAATCAAGAACGTGATTG	0.333													26	75					0	0	0.002445	0	0
DOK6	220164	broad.mit.edu	37	18	67231815	67231815	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr18:67231815C>T	uc002lkl.2	+	2	349	c.159C>T	c.(157-159)TTC>TTT	p.F53F		NM_152721	NP_689934	Q6PKX4	DOK6_HUMAN	docking protein 6	53	PH.						insulin receptor binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Colorectal(73;0.083)|Esophageal squamous(42;0.131)				CAGCTTATTTCAGAAACTTTC	0.408													7	47					0	0	0.004482	0	0
WDR18	57418	broad.mit.edu	37	19	990243	990243	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:990243C>T	uc002lqm.1	+	4	502	c.476C>T	c.(475-477)TCC>TTC	p.S159F	WDR18_uc002lqn.1_RNA|WDR18_uc010drx.1_Missense_Mutation_p.S122F|WDR18_uc010dry.1_Missense_Mutation_p.S159F	NM_024100	NP_077005	Q9BV38	WDR18_HUMAN	WD repeat domain 18	159										skin(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCGACCCCTCCAGGATTCCG	0.731													5	24					0	0	0.002450	0	0
ZNF556	80032	broad.mit.edu	37	19	2873586	2873586	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:2873586C>T	uc002lwp.1	+	2	183	c.96C>T	c.(94-96)GTC>GTT	p.V32V	ZNF556_uc002lwq.2_Silent_p.V32V	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	32	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACAGAGATGTCATGCTGGAGA	0.423													36	93					0	0	0.003610	0	0
RFX2	5990	broad.mit.edu	37	19	6007048	6007048	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:6007048G>A	uc002meb.2	-	12	1646	c.1377C>T	c.(1375-1377)ATC>ATT	p.I459I	RFX2_uc002mec.2_Silent_p.I434I|RFX2_uc002med.1_3'UTR	NM_000635	NP_000626	P48378	RFX2_HUMAN	regulatory factor X2 isoform a	459					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			breast(4)|ovary(1)|skin(1)	6						GCACGTCGGGGATGAGAATCT	0.612													24	40					0	0	0.004656	0	0
MYO1F	4542	broad.mit.edu	37	19	8592300	8592300	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:8592300T>G	uc002mkg.2	-	22	2510	c.2396A>C	c.(2395-2397)AAG>ACG	p.K799T		NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	799						unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						CTCAGGTCCCTTCTTCACTTT	0.557													17	22					0	0	0.007413	0	0
MUC16	94025	broad.mit.edu	37	19	9058034	9058034	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:9058034C>T	uc002mkp.2	-	3	29616	c.29412G>A	c.(29410-29412)GAG>GAA	p.E9804E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9806	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GATGAATTTTCTCTGTATCTG	0.453													23	33					0	0	0.002780	0	0
MUC16	94025	broad.mit.edu	37	19	9063915	9063915	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:9063915G>A	uc002mkp.2	-	3	23735	c.23531C>T	c.(23530-23532)TCA>TTA	p.S7844L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7846	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTTGGTGCCTGAGCTGGTCCC	0.562													12	21					0	0	0.002450	0	0
GCDH	2639	broad.mit.edu	37	19	13004396	13004396	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:13004396C>T	uc002mvq.2	+	6	511	c.434C>T	c.(433-435)TCC>TTC	p.S145F	GCDH_uc010xms.1_Missense_Mutation_p.S112F|GCDH_uc002mvp.2_Missense_Mutation_p.S145F|GCDH_uc010xmt.1_5'UTR|GCDH_uc010xmu.1_Missense_Mutation_p.S101F	NM_000159	NP_000150	Q92947	GCDH_HUMAN	glutaryl-Coenzyme A dehydrogenase isoform a	145					lysine catabolic process	mitochondrial matrix	flavin adenine dinucleotide binding|glutaryl-CoA dehydrogenase activity|protein binding				0						AGTGTCCAGTCCTCCCTCGTC	0.632													56	105					0	0	0.003610	0	0
AKAP8L	26993	broad.mit.edu	37	19	15511107	15511107	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:15511107C>T	uc002naw.1	-	8	1146	c.1047G>A	c.(1045-1047)AAG>AAA	p.K349K	AKAP8L_uc002nax.1_RNA|AKAP8L_uc010xoh.1_Silent_p.K288K|AKAP8L_uc002nay.1_Silent_p.K349K	NM_014371	NP_055186	Q9ULX6	AKP8L_HUMAN	A kinase (PRKA) anchor protein 8-like	349						cytoplasm|nuclear matrix	DEAD/H-box RNA helicase binding|DNA binding|zinc ion binding			ovary(1)	1						AAAACTCACCCTTCTCTGGAT	0.557													36	43					0	0	0.003610	0	0
CYP4F11	57834	broad.mit.edu	37	19	16038055	16038055	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:16038055C>T	uc002nbu.2	-	5	528	c.492G>A	c.(490-492)ATG>ATA	p.M164I	CYP4F11_uc010eab.1_Missense_Mutation_p.M164I|CYP4F11_uc002nbt.2_Missense_Mutation_p.M164I	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	164					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						TGAAAATCTTCATATAAGGCT	0.433													25	37					0	0	0.009535	0	0
SLC5A5	6528	broad.mit.edu	37	19	17988568	17988568	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:17988568G>T	uc002nhr.3	+	6	1082	c.735G>T	c.(733-735)TGG>TGT	p.W245C		NM_000453	NP_000444	Q92911	SC5A5_HUMAN	solute carrier family 5 (sodium iodide	245	Helical; (Potential).				cellular nitrogen compound metabolic process|cellular response to cAMP|cellular response to gonadotropin stimulus|hormone biosynthetic process	integral to membrane|nucleus|plasma membrane	iodide transmembrane transporter activity|sodium:iodide symporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4						ATACATTCTGGACTTTTGTGG	0.602													9	94					7.03913e-09	7.1445e-09	0.001368	1	0
COMP	1311	broad.mit.edu	37	19	18895837	18895837	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:18895837C>T	uc002nke.2	-	16	1819	c.1783G>A	c.(1783-1785)GAC>AAC	p.D595N	COMP_uc002nkd.2_Missense_Mutation_p.D562N|COMP_uc010xqj.1_Missense_Mutation_p.D542N	NM_000095	NP_000086	P49747	COMP_HUMAN	cartilage oligomeric matrix protein precursor	595	Mediates cell survival and induction of the IAP family of survival proteins.|TSP C-terminal.				anti-apoptosis|apoptosis|cell adhesion|limb development	extracellular space|proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent|heparan sulfate proteoglycan binding|heparin binding				0						CCCGCATAGTCGTCATCCGTG	0.552													40	77					0	0	0.003610	0	0
ZNF208	7757	broad.mit.edu	37	19	22154349	22154349	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:22154349G>A	uc002nqp.2	-	6	3252	c.3103C>T	c.(3103-3105)CAT>TAT	p.H1035Y	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TCTACAGTATGAATTTTCTTA	0.358													15	20					0	0	0.006122	0	0
ZNF208	7757	broad.mit.edu	37	19	22157489	22157489	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:22157489C>T	uc002nqp.2	-	4	496	c.347G>A	c.(346-348)GGT>GAT	p.G116D	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				ATTGGTATAACCAATTTTTAA	0.358													23	45					0	0	0.003954	0	0
ZNF91	7644	broad.mit.edu	37	19	23544275	23544275	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:23544275G>A	uc002nre.2	-	4	1619	c.1506C>T	c.(1504-1506)TCC>TCT	p.S502S	ZNF91_uc002nrd.2_5'Flank|ZNF91_uc010xrj.1_Silent_p.S470S	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	502	C2H2-type 13.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				TAAGGGTTGAGGATTGCCTAA	0.368													24	56					0	0	0.005443	0	0
ZNF569	148266	broad.mit.edu	37	19	37905194	37905194	+	Silent	SNP	T	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:37905194T>C	uc002ogi.2	-	6	924	c.366A>G	c.(364-366)GTA>GTG	p.V122V	ZNF569_uc002ogh.2_5'UTR|ZNF569_uc002ogj.2_Silent_p.V146V	NM_152484	NP_689697	Q5MCW4	ZN569_HUMAN	zinc finger protein 569	122					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCAGAGGAAATACATTTGCAA	0.323													21	35					0	0	0.007291	0	0
SPRED3	399473	broad.mit.edu	37	19	38882851	38882851	+	Splice_Site	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:38882851G>A	uc002oim.2	+	3	351	c.347_splice	c.e3-1	p.G116_splice	SPRED3_uc002oil.1_Splice_Site_p.G116_splice	NM_001042522	NP_001035987	Q2MJR0	SPRE3_HUMAN	sprouty-related, EVH1 domain containing 3						multicellular organismal development					central_nervous_system(2)|lung(1)|skin(1)	4	all_cancers(60;3.4e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			CCCTGCCCCAGGCTCACTCAc	0.532													10	7					0	0	0.001368	0	0
RASGRP4	115727	broad.mit.edu	37	19	38910511	38910511	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:38910511G>A	uc002oir.2	-	6	866	c.652C>T	c.(652-654)CAG>TAG	p.Q218*	RASGRP4_uc010efz.1_RNA|RASGRP4_uc010ega.1_RNA|RASGRP4_uc010xua.1_Nonsense_Mutation_p.Q218*|RASGRP4_uc010xub.1_Nonsense_Mutation_p.Q218*|RASGRP4_uc010xuc.1_Nonsense_Mutation_p.Q218*|RASGRP4_uc010xud.1_Nonsense_Mutation_p.Q218*|RASGRP4_uc010xue.1_Nonsense_Mutation_p.Q218*|RASGRP4_uc010egb.2_Nonsense_Mutation_p.Q204*	NM_170604	NP_733749	Q8TDF6	GRP4_HUMAN	RAS guanyl releasing protein 4 isoform a	218	Ras-GEF.				activation of phospholipase C activity|cell growth|cell proliferation|myeloid cell differentiation|positive regulation of Ras protein signal transduction|regulation of G-protein coupled receptor protein signaling pathway|response to extracellular stimulus|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|membrane fraction|plasma membrane|soluble fraction	diacylglycerol binding|GTP-dependent protein binding|metal ion binding|Ras guanyl-nucleotide exchange factor activity			pancreas(1)|lung(1)|skin(1)	3	all_cancers(60;4.21e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			GTGATAGCCTGGAAGGACCGG	0.622													3	10					0	0	0.009096	0	0
PLEKHG2	64857	broad.mit.edu	37	19	39915194	39915194	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:39915194C>T	uc010xuz.1	+	19	3746	c.3421C>T	c.(3421-3423)CCA>TCA	p.P1141S	PLEKHG2_uc010xuy.1_Missense_Mutation_p.P1082S|PLEKHG2_uc002olj.2_Intron|PLEKHG2_uc010xva.1_Missense_Mutation_p.P919S	NM_022835	NP_073746	Q9H7P9	PKHG2_HUMAN	common-site lymphoma/leukemia guanine nucleotide	1141	Pro-rich.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			skin(2)|pancreas(1)|breast(1)	4	all_cancers(60;3.08e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;6.57e-07)|Ovarian(47;0.0569)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CACTCAGGTTCCAGCTACCAC	0.597													19	32					0	0	0.002299	0	0
CYP2A7	1549	broad.mit.edu	37	19	41386106	41386106	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:41386106G>A	uc002opm.2	-	4	1079	c.537C>T	c.(535-537)TCC>TCT	p.S179S	CYP2A7_uc002opo.2_Silent_p.S179S|CYP2A7_uc002opn.2_Silent_p.S128S	NM_000764	NP_000755	P20853	CP2A7_HUMAN	cytochrome P450, family 2, subfamily A,	179						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			TGATGACATTGGAGACTGTGC	0.537													29	64					0	0	0.004289	0	0
PSG9	5678	broad.mit.edu	37	19	43762435	43762435	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:43762435G>A	uc002owd.3	-	5	1261	c.1162C>T	c.(1162-1164)CAT>TAT	p.H388Y	PSG9_uc002owe.3_Missense_Mutation_p.H295Y|PSG9_uc010xwm.1_Missense_Mutation_p.H295Y|PSG9_uc002owf.3_Missense_Mutation_p.H202Y|PSG9_uc002owg.2_Missense_Mutation_p.H295Y|PSG9_uc002owh.2_Missense_Mutation_p.H202Y	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	388	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				AGCCCGCTATGATTTCTAGTA	0.443													109	142					0	0	0.003610	0	0
PSG9	5678	broad.mit.edu	37	19	43766069	43766069	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:43766069C>T	uc002owd.3	-	3	751	c.652G>A	c.(652-654)GAA>AAA	p.E218K	PSG9_uc002owe.3_Missense_Mutation_p.E218K|PSG9_uc010xwm.1_Intron|PSG9_uc002owf.3_Intron|PSG9_uc002owg.2_Missense_Mutation_p.E218K|PSG9_uc002owh.2_Intron	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	218	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TTCCGTATTTCACATTCATAG	0.512													148	256					0	0	0.003610	0	0
MYPOP	339344	broad.mit.edu	37	19	46394007	46394007	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:46394007G>A	uc002pdt.2	-	3	1161	c.1074C>T	c.(1072-1074)GCC>GCT	p.A358A		NM_001012643	NP_001012661	Q86VE0	MYPOP_HUMAN	Myb protein P42POP	358	Pro-rich.					nucleus	DNA binding				0						CGCTCCTTGGGGCAATGATCA	0.692													3	4					0	0	0.009096	0	0
SAE1	10055	broad.mit.edu	37	19	47646800	47646800	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:47646800G>A	uc002pgc.2	+	2	204	c.148G>A	c.(148-150)GAA>AAA	p.E50K	SAE1_uc002pgd.2_Missense_Mutation_p.E50K|SAE1_uc010ekx.2_Missense_Mutation_p.E50K|SAE1_uc010ekw.2_RNA|SAE1_uc010xyk.1_5'UTR|SAE1_uc002pge.2_5'UTR	NM_016402	NP_057486	Q9UBE0	SAE1_HUMAN	SubName: Full=SUMO-1 activating enzyme subunit 1, isoform CRA_b; SubName: Full=cDNA, FLJ96708, Homo sapiens SUMO-1 activating enzyme subunit 1 (SAE1), mRNA;	50					protein sumoylation|protein ubiquitination	nucleus	ATP-dependent protein binding|enzyme activator activity|ligase activity|protein C-terminus binding|protein heterodimerization activity|ubiquitin activating enzyme activity			ovary(1)	1		all_cancers(25;1.13e-05)|all_lung(116;0.000192)|all_epithelial(76;0.000274)|Lung NSC(112;0.000446)|all_neural(266;0.0652)|Ovarian(192;0.15)		all cancers(93;0.00013)|OV - Ovarian serous cystadenocarcinoma(262;0.000146)|Epithelial(262;0.00697)|GBM - Glioblastoma multiforme(486;0.0278)		ACTTGGGGCTGAAATTGCCAA	0.517													41	68					0	0	0.003610	0	0
NTN5	126147	broad.mit.edu	37	19	49173622	49173622	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:49173622G>A	uc002pkb.2	-	2	718	c.622C>T	c.(622-624)CCT>TCT	p.P208S	SEC1_uc010xzv.1_Intron|SEC1_uc002pka.2_Intron|SEC1_uc010xzw.1_Intron|SEC1_uc010ema.2_Intron|NTN5_uc002pkc.2_Missense_Mutation_p.P208S	NM_145807	NP_665806	Q8WTR8	NET5_HUMAN	netrin 5 precursor	208	Laminin EGF-like 1.					extracellular region				large_intestine(1)|pancreas(1)	2						CGTAGGCAAGGGTGGGGGTGC	0.697													4	0					0	0	0.009096	0	0
BCAT2	587	broad.mit.edu	37	19	49302952	49302952	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:49302952G>A	uc002pkr.2	-	6	712	c.675C>T	c.(673-675)GTC>GTT	p.V225V	BCAT2_uc002pkp.2_Silent_p.V185V|BCAT2_uc002pkq.3_Silent_p.V185V|BCAT2_uc002pks.2_Silent_p.V185V|BCAT2_uc002pkt.2_Silent_p.V133V|BCAT2_uc010emh.1_Silent_p.V225V|BCAT2_uc010emi.1_Silent_p.V133V|BCAT2_uc002pku.1_Silent_p.V185V	NM_001190	NP_001181	O15382	BCAT2_HUMAN	branched chain aminotransferase 2, mitochondrial	225						mitochondrial matrix	L-isoleucine transaminase activity|L-leucine transaminase activity|L-valine transaminase activity			ovary(1)	1		all_epithelial(76;7e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000138)|all cancers(93;0.000366)|Epithelial(262;0.0195)|GBM - Glioblastoma multiforme(486;0.0224)	L-Glutamic Acid(DB00142)|L-Isoleucine(DB00167)|L-Leucine(DB00149)|Pyridoxal Phosphate(DB00114)	TGTAGTTGCCGACCCCGCCCA	0.652													9	8					0	0	0.000978	0	0
SHANK1	50944	broad.mit.edu	37	19	51165655	51165655	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:51165655G>A	uc002psx.1	-	23	6072	c.6053C>T	c.(6052-6054)TCG>TTG	p.S2018L	SHANK1_uc002psw.1_Missense_Mutation_p.S1402L	NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	2018					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		GGGCAGGGACGAGGGCCTGGG	0.721													8	6					0	0	0.008291	0	0
KLK6	5653	broad.mit.edu	37	19	51470496	51470496	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:51470496C>T	uc002pui.2	-	4	386	c.126G>A	c.(124-126)TCG>TCA	p.S42S	KLK6_uc010eoj.2_Silent_p.S42S|KLK6_uc002puh.2_Silent_p.S51S|KLK6_uc002puj.2_5'UTR|KLK6_uc010ycn.1_Intron|KLK6_uc002pul.2_Silent_p.S42S|KLK6_uc002pum.2_Intron	NM_001012964	NP_001012982	Q92876	KLK6_HUMAN	kallikrein-related peptidase 6 isoform A	42	Peptidase S1.				amyloid precursor protein metabolic process|central nervous system development|collagen catabolic process|hormone metabolic process|myelination|positive regulation of G-protein coupled receptor protein signaling pathway|protein autoprocessing|proteolysis|regulation of cell differentiation|tissue regeneration	endoplasmic reticulum|extracellular region|microsome|mitochondrion|nucleolus	protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00372)|GBM - Glioblastoma multiforme(134;0.00871)		GCAAGTGGCCCGAGGTGTAGA	0.557													29	67					0	0	0.009535	0	0
KLK13	26085	broad.mit.edu	37	19	51563194	51563195	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:51563194_51563195GG>AA	uc002pvn.2	-	3	438_439	c.395_396CC>TT	c.(394-396)TCC>TTT	p.S132F	KLK13_uc002pvl.2_Intron|KLK13_uc002pvm.2_RNA|KLK13_uc002pvo.2_Intron|KLK13_uc002pvp.2_RNA|KLK13_uc010eon.2_Intron|KLK13_uc002pvq.2_Intron|KLK13_uc010eoo.2_Intron|KLK13_uc002pvr.2_Missense_Mutation_p.S132F	NM_015596	NP_056411	Q9UKR3	KLK13_HUMAN	kallikrein 13 precursor	132	Peptidase S1.				proteolysis		protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00224)|GBM - Glioblastoma multiforme(134;0.00432)		GCTGGACCGGGGACTGCAGCTC	0.609													34	80					0	0	0.004672	0	0
ZNF813	126017	broad.mit.edu	37	19	53994975	53994975	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:53994975T>G	uc002qbu.2	+	4	1617	c.1489T>G	c.(1489-1491)TGT>GGT	p.C497G	ZNF813_uc010eqq.1_Intron	NM_001004301	NP_001004301	Q6ZN06	ZN813_HUMAN	zinc finger protein 813	497	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00619)		ACCTTACAAGTGTAATGAATG	0.403													19	42					0	0	0.010504	0	0
CACNG6	59285	broad.mit.edu	37	19	54515394	54515394	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:54515394C>T	uc002qct.2	+	4	1324	c.734C>T	c.(733-735)TCC>TTC	p.S245F	CACNG6_uc002qcu.2_Missense_Mutation_p.S199F|CACNG6_uc002qcv.2_Missense_Mutation_p.S174F	NM_145814	NP_665813	Q9BXT2	CCG6_HUMAN	voltage-dependent calcium channel gamma-6	245						voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(2)	2	all_cancers(19;0.0128)|all_epithelial(19;0.00564)|all_lung(19;0.031)|Lung NSC(19;0.0358)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.168)		ACACTGCCTTCCTGGCCCTGG	0.672													24	40					0	0	0.002780	0	0
LILRA2	11027	broad.mit.edu	37	19	55087331	55087331	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:55087331G>A	uc002qgg.3	+	6	1099	c.1010G>A	c.(1009-1011)GGA>GAA	p.G337E	LILRA2_uc010ern.2_Missense_Mutation_p.G337E|LILRA2_uc002qgf.2_Missense_Mutation_p.G337E|LILRA2_uc010yfe.1_Missense_Mutation_p.G337E|LILRA2_uc010yff.1_Missense_Mutation_p.G325E|LILRA2_uc010ero.2_Missense_Mutation_p.G325E|LILRA2_uc010yfg.1_Intron	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	337	Ig-like C2-type 4.|Extracellular (Potential).				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		GTAGCCCCAGGAAAGAACGTG	0.592													25	33					0	0	0.007291	0	0
NLRP9	338321	broad.mit.edu	37	19	56244307	56244307	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:56244307C>T	uc002qly.2	-	2	918	c.890G>A	c.(889-891)GGA>GAA	p.G297E		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	297	NACHT.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		TTCACTGAATCCTAAGAGCTT	0.398													16	25					0	0	0.004990	0	0
NLRP4	147945	broad.mit.edu	37	19	56369074	56369074	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:56369074G>A	uc002qmd.3	+	3	737	c.315G>A	c.(313-315)CAG>CAA	p.Q105Q	NLRP4_uc002qmf.2_Silent_p.Q30Q|NLRP4_uc010etf.2_5'UTR	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	105							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		ACGCAAAGCAGAAATTCAGCC	0.438													17	38					0	0	0.008871	0	0
ZIM2	23619	broad.mit.edu	37	19	57301315	57301315	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr19:57301315G>A	uc002qnr.2	-	8	784	c.402C>T	c.(400-402)TTC>TTT	p.F134F	uc010ygp.1_RNA|uc002qnp.1_RNA|ZIM2_uc010ygq.1_5'UTR|ZIM2_uc010ygr.1_5'UTR|ZIM2_uc002qnq.2_Silent_p.F134F|ZIM2_uc010etp.2_Silent_p.F134F|ZIM2_uc010ygs.1_Silent_p.F134F	NM_015363	NP_056178	Q9NZV7	ZIM2_HUMAN	zinc finger, imprinted 2	134					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0314)		CCTGAGCAAGGAAACCTAGAA	0.532													12	21					0	0	0.001855	0	0
FAM49A	81553	broad.mit.edu	37	2	16743404	16743404	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:16743404C>T	uc010exm.1	-	5	452	c.304G>A	c.(304-306)GCT>ACT	p.A102T	FAM49A_uc002rck.1_Missense_Mutation_p.A102T	NM_030797	NP_110424	Q9H0Q0	FA49A_HUMAN	family with sequence similarity 49, member A	102						intracellular					0	Acute lymphoblastic leukemia(172;0.0734)|all_hematologic(175;0.088)		GBM - Glioblastoma multiforme(3;0.00969)			CTCTGAAGAGCTTTTTCTGAA	0.453													28	30					0	0	0.002096	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17697177	17697177	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:17697177C>T	uc002rcl.1	-	1	2530	c.2506G>A	c.(2506-2508)GAA>AAA	p.E836K	RAD51AP2_uc010exn.1_Missense_Mutation_p.E827K	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	836										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					ACTTTTACTTCCTCTTTCAAA	0.299													11	9					0	0	0.001855	0	0
DNAJC27	51277	broad.mit.edu	37	2	25179971	25179971	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:25179971C>T	uc002rft.1	-	5	520	c.469G>A	c.(469-471)GGG>AGG	p.G157R	DNAJC27_uc010ykn.1_Missense_Mutation_p.G86R|DNAJC27_uc002rfu.1_RNA|DNAJC27_uc010eyg.1_Missense_Mutation_p.G157R	NM_016544	NP_057628	Q9NZQ0	DJC27_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 27	157					protein folding|small GTPase mediated signal transduction		GTP binding|heat shock protein binding|unfolded protein binding			skin(1)	1						TACAGGAACCCTTTGCTTTCA	0.433													33	47					0	0	0.004878	0	0
BIRC6	57448	broad.mit.edu	37	2	32754816	32754816	+	Nonsense_Mutation	SNP	A	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:32754816A>T	uc010ezu.2	+	60	12153	c.12019A>T	c.(12019-12021)AAA>TAA	p.K4007*	MIR558_hsa-mir-558|MI0003564_5'Flank	NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	4007					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					TCTGACTGTTAAATTGGGATC	0.393													29	23					0	0	0.002836	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43937246	43937246	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:43937246C>T	uc010yny.1	+	12	2167	c.2084C>T	c.(2083-2085)TCC>TTC	p.S695F	PLEKHH2_uc002rte.3_Missense_Mutation_p.S695F|PLEKHH2_uc002rtf.3_Missense_Mutation_p.S694F	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	695	Poly-Ser.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				TGCTCATCTTCCAGTGATAAT	0.393													20	54					0	0	0.010504	0	0
DYSF	8291	broad.mit.edu	37	2	71762204	71762204	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:71762204C>T	uc002sie.2	+	14	1714	c.1338C>T	c.(1336-1338)ATC>ATT	p.I446I	DYSF_uc010feg.2_Silent_p.I477I|DYSF_uc010feh.2_Silent_p.I446I|DYSF_uc002sig.3_Silent_p.I446I|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.I446I|DYSF_uc010fef.2_Silent_p.I477I|DYSF_uc010fei.2_Silent_p.I477I|DYSF_uc010fek.2_Silent_p.I478I|DYSF_uc010fej.2_Silent_p.I447I|DYSF_uc010fel.2_Silent_p.I447I|DYSF_uc010feo.2_Silent_p.I478I|DYSF_uc010fem.2_Silent_p.I447I|DYSF_uc010fen.2_Silent_p.I478I|DYSF_uc002sif.2_Silent_p.I447I	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	446	Cytoplasmic (Potential).|C2 3.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						ACCAGAACATCACACTGCCTG	0.612													33	31					0	0	0.003755	0	0
DYSF	8291	broad.mit.edu	37	2	71906294	71906294	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:71906294C>T	uc002sie.2	+	52	6251	c.5875C>T	c.(5875-5877)CTT>TTT	p.L1959F	DYSF_uc010feg.2_Missense_Mutation_p.L1990F|DYSF_uc010feh.2_Missense_Mutation_p.L1966F|DYSF_uc002sig.3_Missense_Mutation_p.L1945F|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.L1980F|DYSF_uc010fef.2_Missense_Mutation_p.L1997F|DYSF_uc010fei.2_Missense_Mutation_p.L1976F|DYSF_uc010fek.2_Missense_Mutation_p.L1977F|DYSF_uc010fej.2_Missense_Mutation_p.L1967F|DYSF_uc010fel.2_Missense_Mutation_p.L1946F|DYSF_uc010feo.2_Missense_Mutation_p.L1991F|DYSF_uc010fem.2_Missense_Mutation_p.L1981F|DYSF_uc010fen.2_Missense_Mutation_p.L1998F|DYSF_uc002sif.2_Missense_Mutation_p.L1960F|DYSF_uc010yqy.1_Missense_Mutation_p.L840F|DYSF_uc010yqz.1_Missense_Mutation_p.L720F	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1959	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GTTTGTGTCCCTTTTTGAGCA	0.537													18	36					0	0	0.010504	0	0
ALMS1	7840	broad.mit.edu	37	2	73718043	73718043	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:73718043C>T	uc002sje.1	+	12	9071	c.8960C>T	c.(8959-8961)CCC>CTC	p.P2987L	ALMS1_uc002sjf.1_Missense_Mutation_p.P2943L|ALMS1_uc002sjg.2_Missense_Mutation_p.P2373L|ALMS1_uc002sjh.1_Missense_Mutation_p.P2373L	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	2985					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						CACCATTTTCCCCTTCCTCAA	0.393													29	56					0	0	0.003271	0	0
C2orf65	130951	broad.mit.edu	37	2	74834230	74834230	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:74834230G>A	uc002smy.2	-	4	664	c.547C>T	c.(547-549)CTA>TTA	p.L183L	C2orf65_uc010ysa.1_Silent_p.L183L|C2orf65_uc002smz.2_Silent_p.L183L	NM_138804	NP_620159	Q8TC57	CB065_HUMAN	hypothetical protein LOC130951	183					chromatin assembly|female gamete generation|RNA processing|spermatogenesis	integral to membrane				ovary(1)|pancreas(1)	2						ACGTGCTCTAGGATTCCCTTT	0.423													19	65					0	0	0.002299	0	0
FLJ40330	645784	broad.mit.edu	37	2	89100634	89100634	+	RNA	SNP	A	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:89100634A>T	uc010fhg.2	+	13		c.1074A>T			FLJ40330_uc010fhh.2_RNA|FLJ40330_uc010fhi.1_RNA	NR_015424				Homo sapiens mRNA; cDNA DKFZp434J1630 (from clone DKFZp434J1630).												0						TGATGCTCGCAACAAAGCTGA	0.338													50	73					0	0	0.003610	0	0
GGT8P	645367	broad.mit.edu	37	2	91968462	91968462	+	RNA	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:91968462G>A	uc010fho.1	+	2		c.793G>A				NR_003503				Homo sapiens cDNA FLJ31276 fis, clone KIDNE2006376, weakly similar to GAMMA-GLUTAMYLTRANSPEPTIDASE 1 PRECURSOR (EC 2.3.2.2).												0						AGTGCCTGGGGAGATCCGAGG	0.667													3	12					0	0	0.004672	0	0
TEKT4	150483	broad.mit.edu	37	2	95542331	95542331	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:95542331C>T	uc002stw.1	+	6	1218	c.1125C>T	c.(1123-1125)TCC>TCT	p.S375S	uc002stv.1_Intron|TEKT4_uc010fhr.1_RNA	NM_144705	NP_653306	Q8WW24	TEKT4_HUMAN	tektin 4	375	Potential.				cell projection organization|microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|breast(1)|skin(1)	3						TGAACATGTCCCTCACAGCAC	0.607													8	9					0	0	0.003080	0	0
VWA3B	200403	broad.mit.edu	37	2	98709590	98709590	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:98709590A>T	uc002syo.2	+	2	299	c.35A>T	c.(34-36)GAG>GTG	p.E12V	VWA3B_uc010yvh.1_5'UTR|VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_5'UTR|VWA3B_uc002sym.2_Missense_Mutation_p.E12V|VWA3B_uc002syn.1_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	12										ovary(3)|large_intestine(2)|skin(1)	6						ACCATCTCTGAGCAGCAGCTG	0.453													35	27					0	0	0.003610	0	0
SLC5A7	60482	broad.mit.edu	37	2	108626771	108626771	+	Silent	SNP	G	A	A	rs141187628		TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:108626771G>A	uc002tdv.2	+	9	1473	c.1197G>A	c.(1195-1197)ACG>ACA	p.T399T	SLC5A7_uc010ywm.1_Silent_p.T152T|SLC5A7_uc010fjj.2_Silent_p.T399T|SLC5A7_uc010ywn.1_Silent_p.T286T	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	399	Cytoplasmic (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	CCTTGCTGACGAAAACTGTGT	0.463													46	50					0	0	0.003610	0	0
ACOXL	55289	broad.mit.edu	37	2	111753534	111753534	+	Missense_Mutation	SNP	C	T	T	rs150734728	byFrequency	TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:111753534C>T	uc002tgr.3	+	15	1548	c.1324C>T	c.(1324-1326)CGT>TGT	p.R442C	ACOXL_uc010fkc.2_Missense_Mutation_p.R412C|ACOXL_uc010yxk.1_Missense_Mutation_p.R412C	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	442					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						AGTGAAATTTCGTGAAAGGGT	0.368													70	89					0	0	0.003610	0	0
IL1F9	56300	broad.mit.edu	37	2	113736882	113736882	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:113736882G>A	uc002tio.1	+	3	209	c.140G>A	c.(139-141)CGA>CAA	p.R47Q	IL1F9_uc010fkr.1_Intron	NM_019618	NP_062564	Q9NZH8	IL36G_HUMAN	interleukin 1 family, member 9	47					cell-cell signaling	extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						GCAGTTCCACGAAGTGACAGT	0.493													21	52					0	0	0.002780	0	0
DPP10	57628	broad.mit.edu	37	2	116485450	116485450	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:116485450G>A	uc002tla.1	+	8	1092	c.635G>A	c.(634-636)CGA>CAA	p.R212Q	DPP10_uc002tlb.1_Missense_Mutation_p.R162Q|DPP10_uc002tlc.1_Missense_Mutation_p.R208Q|DPP10_uc002tle.2_Missense_Mutation_p.R216Q|DPP10_uc002tlf.1_Missense_Mutation_p.R205Q	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	212	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						AGTTCATTGCGACTGACATCT	0.308													13	14					0	0	0.001855	0	0
PROC	5624	broad.mit.edu	37	2	128186126	128186126	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:128186126C>T	uc002tok.2	+	9	1063	c.990C>T	c.(988-990)CTC>CTT	p.L330L	PROC_uc002tol.2_Silent_p.L351L|PROC_uc010yzi.1_Silent_p.L386L|PROC_uc010yzj.1_Silent_p.L225L|PROC_uc010yzk.1_Silent_p.L385L|PROC_uc002tom.2_Silent_p.L364L	NM_000312	NP_000303	P04070	PROC_HUMAN	protein C	330	Peptidase S1.				blood coagulation|leukocyte migration|negative regulation of apoptosis|negative regulation of blood coagulation|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|Golgi lumen|plasma membrane	calcium ion binding|protein binding|serine-type endopeptidase activity				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0673)	Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)|Sodium Tetradecyl Sulfate(DB00464)	AGCGCGAGCTCAATCAGGCCG	0.637													28	86					0	0	0.007291	0	0
POTEF	728378	broad.mit.edu	37	2	130877853	130877853	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:130877853T>C	uc010fmh.2	-	3	636	c.236A>G	c.(235-237)AAC>AGC	p.N79S		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	79						cell cortex	ATP binding			skin(3)|ovary(2)	5						AGCGCCCACGTTGCTCTTGCC	0.602													45	141					0	0	0.003610	0	0
POTEE	445582	broad.mit.edu	37	2	131976306	131976306	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:131976306G>A	uc002tsn.2	+	1	383	c.331G>A	c.(331-333)GGG>AGG	p.G111R	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_5'UTR|POTEE_uc002tsl.2_5'UTR	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	111							ATP binding				0						CTGCTGCAGGGGGAGCGGCAA	0.602													42	39					0	0	0.003610	0	0
LOC401010	401010	broad.mit.edu	37	2	132201180	132201180	+	Silent	SNP	G	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:132201180G>C	uc002tst.2	-	1	1288	c.822C>G	c.(820-822)CTC>CTG	p.L274L		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						ACAAGGGTTGGAGGGCTTCGC	0.587													13	13					0	0	0.006122	0	0
THSD7B	80731	broad.mit.edu	37	2	138208523	138208523	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:138208523G>A	uc002tva.1	+	14	2975	c.2975G>A	c.(2974-2976)CGA>CAA	p.R992Q	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GTGAGAATTCGATCCAAATGG	0.413													9	15					0	0	0.006214	0	0
LRP1B	53353	broad.mit.edu	37	2	141215031	141215031	+	Splice_Site	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:141215031C>T	uc002tvj.1	-	61	10786	c.9814_splice	c.e61+1	p.V3272_splice		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B						protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGAATAATTACCATCAGGTTG	0.333										TSP Lung(27;0.18)			31	86					0	0	0.002445	0	0
LRP1B	53353	broad.mit.edu	37	2	141253291	141253291	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:141253291C>T	uc002tvj.1	-	56	9849	c.8877G>A	c.(8875-8877)CTG>CTA	p.L2959L		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2959	Extracellular (Potential).|EGF-like 6.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CGTCATCCTTCAGTTGGAATC	0.408										TSP Lung(27;0.18)			30	23					0	0	0.008361	0	0
LRP1B	53353	broad.mit.edu	37	2	141986902	141986902	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:141986902C>T	uc002tvj.1	-	6	1672	c.700G>A	c.(700-702)GAA>AAA	p.E234K	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	234	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GTATGAATTTCATTTCCATTG	0.294										TSP Lung(27;0.18)			14	14					0	0	0.003163	0	0
NEB	4703	broad.mit.edu	37	2	152474902	152474902	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:152474902C>T	uc010fnx.2	-	70	10425	c.10234G>A	c.(10234-10236)GAA>AAA	p.E3412K		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3412	Nebulin 93.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CTAAGTAATTCTCCAGCTCTC	0.443													25	61					0	0	0.004656	0	0
NEB	4703	broad.mit.edu	37	2	152496516	152496516	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:152496516G>A	uc010fnx.2	-	62	8935	c.8744C>T	c.(8743-8745)TCT>TTT	p.S2915F	NEB_uc002txu.2_Missense_Mutation_p.S19F	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2915	Nebulin 79.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CACATCCAAAGAGCCAATGGA	0.403													62	65					0	0	0.003610	0	0
ARL6IP6	151188	broad.mit.edu	37	2	153575233	153575233	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:153575233C>T	uc002tyn.2	+	1	811	c.95C>T	c.(94-96)ACT>ATT	p.T32I	ARL6IP6_uc002tym.2_Intron|ARL6IP6_uc002tyo.2_5'Flank|PRPF40A_uc002tyh.3_5'Flank|PRPF40A_uc010zcd.1_5'Flank|PRPF40A_uc002tyi.2_5'Flank|PRPF40A_uc002tyj.2_5'Flank|PRPF40A_uc002tyl.1_5'Flank	NM_152522	NP_689735	Q8N6S5	AR6P6_HUMAN	ADP-ribosylation-like factor 6 interacting	32						integral to membrane					0						TCCTCCTTTACTCAGGGGGAC	0.701													9	33					0	0	0.006214	0	0
CYTIP	9595	broad.mit.edu	37	2	158283932	158283932	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:158283932C>T	uc002tzj.1	-	6	549	c.477G>A	c.(475-477)ACG>ACA	p.T159T	CYTIP_uc010zcl.1_Silent_p.T53T	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	159	PDZ.				regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						GAGTCTCTATCCTGTTTTAAG	0.358													8	11					0	0	0.004482	0	0
BAZ2B	29994	broad.mit.edu	37	2	160289403	160289403	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:160289403C>T	uc002uao.2	-	9	2117	c.1765G>A	c.(1765-1767)GAA>AAA	p.E589K	BAZ2B_uc002uap.2_Missense_Mutation_p.E587K|BAZ2B_uc002uas.1_Missense_Mutation_p.E526K|BAZ2B_uc002uaq.1_Missense_Mutation_p.E517K|BAZ2B_uc002uar.1_Missense_Mutation_p.E162K	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	589					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						CTGAATTGTTCCACTAAAGAT	0.313													50	67					0	0	0.003610	0	0
LY75	4065	broad.mit.edu	37	2	160698800	160698800	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:160698800G>A	uc002ubc.3	-	24	3305	c.3236C>T	c.(3235-3237)TCC>TTC	p.S1079F	LY75_uc002ubb.3_Missense_Mutation_p.S1079F|LY75_uc010fos.2_Missense_Mutation_p.S1079F	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	1079	Extracellular (Potential).|C-type lectin 6.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		TTCACTGCAGGATGTAAAATT	0.363													21	40					0	0	0.004656	0	0
RBMS1	5937	broad.mit.edu	37	2	161143521	161143521	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:161143521G>A	uc002ubo.2	-	7	1159	c.715C>T	c.(715-717)CCT>TCT	p.P239S	RBMS1_uc002ubj.2_Missense_Mutation_p.P206S|RBMS1_uc002ubk.2_Missense_Mutation_p.P206S|RBMS1_uc002ubl.2_Missense_Mutation_p.P237S|RBMS1_uc002ubn.2_Missense_Mutation_p.P239S|RBMS1_uc002ubi.3_Missense_Mutation_p.P239S|RBMS1_uc002ubm.2_Missense_Mutation_p.P206S|RBMS1_uc002ubp.2_Missense_Mutation_p.P239S|RBMS1_uc010fox.2_Missense_Mutation_p.P239S	NM_016836	NP_058520	P29558	RBMS1_HUMAN	RNA binding motif, single stranded interacting	239					DNA replication|RNA processing	nucleus	double-stranded DNA binding|nucleotide binding|protein binding|RNA binding|single-stranded DNA binding				0						CTTCCATTAGGGATGTATTTG	0.443													44	156					0	0	0.003610	0	0
SLC38A11	151258	broad.mit.edu	37	2	165793867	165793867	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:165793867G>A	uc002ucv.1	-	8	979	c.442C>T	c.(442-444)CCA>TCA	p.P148S	SLC38A11_uc002ucu.1_Missense_Mutation_p.P126S|SLC38A11_uc002ucw.1_Missense_Mutation_p.P148S	NM_173512	NP_775783	Q08AI6	S38AB_HUMAN	solute carrier family 38, member 11	148	Cytoplasmic (Potential).				amino acid transport|sodium ion transport	integral to membrane				ovary(1)	1						TACATGTGTGGACCCAGTGAA	0.358													61	51					0	0	0.003610	0	0
SCN1A	6323	broad.mit.edu	37	2	166904225	166904225	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:166904225C>T	uc010zcz.1	-	8	1100	c.1082G>A	c.(1081-1083)GGC>GAC	p.G361D	SCN1A_uc002udo.3_Missense_Mutation_p.G230D|SCN1A_uc010fpk.2_Missense_Mutation_p.G230D	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	361	I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	GCTTGTGTAGCCATAATTGGG	0.408													52	81					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179414578	179414578	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:179414578A>T	uc010zfg.1	-	287	84391	c.84167T>A	c.(84166-84168)GTT>GAT	p.V28056D	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.V21751D|TTN_uc010zfi.1_Missense_Mutation_p.V21684D|TTN_uc010zfj.1_Missense_Mutation_p.V21559D	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	28983							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATTGGCCCAACTACTTTTCC	0.398													36	38					0	0	0.003214	0	0
TTN	7273	broad.mit.edu	37	2	179425166	179425166	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:179425166C>T	uc010zfg.1	-	275	78213	c.77989G>A	c.(77989-77991)GAA>AAA	p.E25997K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E19692K|TTN_uc010zfi.1_Missense_Mutation_p.E19625K|TTN_uc010zfj.1_Missense_Mutation_p.E19500K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26924							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTCATAGATTCTTTGGTCACA	0.428													10	23					0	0	0.000978	0	0
TTN	7273	broad.mit.edu	37	2	179478995	179478995	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:179478995C>T	uc010zfg.1	-	211	41649	c.41425G>A	c.(41425-41427)GAT>AAT	p.D13809N	uc002ump.1_RNA|TTN_uc010zfh.1_Missense_Mutation_p.D7504N|TTN_uc010zfi.1_Missense_Mutation_p.D7437N|TTN_uc010zfj.1_Missense_Mutation_p.D7312N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14736							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCACCATCATCGCGTGGTGGG	0.458													34	33					0	0	0.006230	0	0
TTN	7273	broad.mit.edu	37	2	179500305	179500305	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:179500305C>T	uc010zfg.1	-	176	34266	c.34042G>A	c.(34042-34044)GAA>AAA	p.E11348K	TTN_uc010zfh.1_Missense_Mutation_p.E5043K|TTN_uc010zfi.1_Missense_Mutation_p.E4976K|TTN_uc010zfj.1_Missense_Mutation_p.E4851K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12275							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCATTTGGTTCCGCAGGGATT	0.388													3	8					0	0	0.004672	0	0
TTN	7273	broad.mit.edu	37	2	179592993	179592993	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:179592993C>T	uc010zfg.1	-	64	16050	c.15826G>A	c.(15826-15828)GAA>AAA	p.E5276K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E1937K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6203							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTAGATATTTCTTTTCCATCC	0.378													8	30					0	0	0.001368	0	0
ZNF804A	91752	broad.mit.edu	37	2	185801485	185801485	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:185801485C>T	uc002uph.2	+	4	1956	c.1362C>T	c.(1360-1362)TCC>TCT	p.S454S		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	454						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						CATCAATTTCCTATAGCTGTA	0.343													36	36					0	0	0.005524	0	0
PARD3B	117583	broad.mit.edu	37	2	206480299	206480299	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:206480299C>T	uc002var.1	+	23	3587	c.3380C>T	c.(3379-3381)CCC>CTC	p.P1127L	PARD3B_uc002vao.1_Missense_Mutation_p.P1026L|PARD3B_uc002vap.1_Missense_Mutation_p.P1065L|PARD3B_uc002vaq.1_Missense_Mutation_p.P1058L|uc010fuc.1_5'Flank	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	1127					cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		GGGAGCTATCCCCGCCCCACA	0.602													25	59					0	0	0.004656	0	0
ZDBF2	57683	broad.mit.edu	37	2	207174383	207174383	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:207174383G>A	uc002vbp.2	+	5	5381	c.5131G>A	c.(5131-5133)GAT>AAT	p.D1711N		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1711							nucleic acid binding|zinc ion binding			ovary(3)	3						TTCTGCAGTGGATTTTGGTGC	0.468													12	18					0	0	0.004007	0	0
LANCL1	10314	broad.mit.edu	37	2	211299265	211299265	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:211299265G>A	uc010zjh.1	-	10	1221	c.1146C>T	c.(1144-1146)TTC>TTT	p.F382F	LANCL1_uc002ved.2_Silent_p.F382F|LANCL1_uc010fuq.2_Silent_p.F382F	NM_001136574	NP_001130046	O43813	LANC1_HUMAN	lanthionine synthetase C-like protein 1	382						cytoplasm|integral to plasma membrane|microtubule cytoskeleton|nucleus	catalytic activity|G-protein coupled receptor activity|glutathione binding|low-density lipoprotein particle receptor binding|SH3 domain binding|zinc ion binding				0				Epithelial(149;0.00562)|Lung(261;0.0468)|LUSC - Lung squamous cell carcinoma(261;0.0495)|all cancers(144;0.0569)		GGTCAGCCAGGAAATATATTG	0.433													33	45					0	0	0.004878	0	0
ERBB4	2066	broad.mit.edu	37	2	212483927	212483928	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:212483927_212483928GG>AA	uc002veg.1	-	19	2373_2374	c.2275_2276CC>TT	c.(2275-2277)CCC>TTC	p.P759F	ERBB4_uc002veh.1_Missense_Mutation_p.P759F|ERBB4_uc010zji.1_Missense_Mutation_p.P749F|ERBB4_uc010zjj.1_Missense_Mutation_p.P749F|ERBB4_uc010fut.1_Missense_Mutation_p.P759F	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	759	Protein kinase.|Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		ATTTGCCTTGGGACCAGTTGTC	0.366										TSP Lung(8;0.080)			19	45					0	0	0.004672	0	0
C2orf24	27013	broad.mit.edu	37	2	220037718	220037718	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:220037718G>A	uc002vju.3	-	8	975	c.823C>T	c.(823-825)CGT>TGT	p.R275C	NHEJ1_uc002vjq.3_5'Flank|SLC23A3_uc010zkr.1_5'Flank|SLC23A3_uc010zks.1_5'Flank|SLC23A3_uc010fwb.2_5'Flank|C2orf24_uc002vjv.2_Missense_Mutation_p.R275C	NM_015680	NP_056495	Q9BV87	CNPD1_HUMAN	hypothetical protein LOC27013	275					regulation of cyclin-dependent protein kinase activity	integral to membrane	protein kinase binding				0		Renal(207;0.0915)		Epithelial(149;8.92e-07)|all cancers(144;0.000151)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGGAGGCAACGGGAGGTCAGT	0.617													32	96					0	0	0.003610	0	0
EPHA4	2043	broad.mit.edu	37	2	222320320	222320320	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:222320320C>T	uc002vmq.2	-	8	1704	c.1662G>A	c.(1660-1662)TCG>TCA	p.S554S	EPHA4_uc002vmr.2_Silent_p.S554S|EPHA4_uc010zlm.1_Silent_p.S495S|EPHA4_uc010zln.1_Silent_p.S554S	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	554	Helical; (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		CCACACTGCCCGAGACAGAGA	0.537													17	56					0	0	0.007413	0	0
COL4A4	1286	broad.mit.edu	37	2	227876987	227876987	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:227876987C>T	uc010zlt.1	-	44	4897	c.4243G>A	c.(4243-4245)GGC>AGC	p.G1415S		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1415	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CCCCTCCTGCCATCCAGCCCA	0.502													16	33					0	0	0.006122	0	0
COL4A4	1286	broad.mit.edu	37	2	227912266	227912266	+	Splice_Site	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:227912266C>T	uc010zlt.1	-	35	3869	c.3215_splice	c.e35-1	p.G1072_splice		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor						axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CCTTTGTTTCCTGAAAGGGAT	0.413													7	27					0	0	0.001984	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882839	228882839	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:228882839G>A	uc002vpq.2	-	7	2778	c.2731C>T	c.(2731-2733)CCT>TCT	p.P911S	SPHKAP_uc002vpp.2_Missense_Mutation_p.P911S|SPHKAP_uc010zlx.1_Missense_Mutation_p.P911S	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	911						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GATTGAGCAGGAAGCAGCAGG	0.473													74	88					0	0	0.003610	0	0
LRRFIP1	9208	broad.mit.edu	37	2	238671495	238671495	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr2:238671495C>G	uc002vxe.2	+	11	1431	c.1139C>G	c.(1138-1140)TCT>TGT	p.S380C	LRRFIP1_uc002vxc.2_Intron|LRRFIP1_uc010znm.1_Intron|LRRFIP1_uc002vxd.2_Missense_Mutation_p.S356C|LRRFIP1_uc002vxf.2_Missense_Mutation_p.S324C	NM_001137552	NP_001131024	Q32MZ4	LRRF1_HUMAN	leucine rich repeat (in FLII) interacting	380					negative regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|cytoskeleton|nucleus	DNA binding|double-stranded RNA binding|protein binding			breast(3)	3		Breast(86;0.00257)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;9.75e-23)|OV - Ovarian serous cystadenocarcinoma(60;1.01e-10)|Kidney(56;4.85e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.31e-07)|BRCA - Breast invasive adenocarcinoma(100;0.000151)|Lung(119;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0325)|COAD - Colon adenocarcinoma(134;0.228)		GAGAGCAGTTCTCTCCCTGAA	0.498													46	69					0	0	0.003610	0	0
PLCB4	5332	broad.mit.edu	37	20	9459570	9459570	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr20:9459570G>A	uc002wnf.2	+	37	3598	c.3462G>A	c.(3460-3462)GCG>GCA	p.A1154A	PLCB4_uc010gbx.2_Silent_p.A1166A|PLCB4_uc002wne.2_Missense_Mutation_p.E1167K|PLCB4_uc002wnh.2_Silent_p.A1001A	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	1154					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						TGTTATAGGCGAAGGAGATGC	0.458													17	30					0	0	0.010504	0	0
ZNF341	84905	broad.mit.edu	37	20	32379193	32379193	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr20:32379193A>C	uc002wzy.2	+	15	2455	c.2435A>C	c.(2434-2436)GAA>GCA	p.E812A	ZNF341_uc002wzx.2_Missense_Mutation_p.E805A|ZNF341_uc010geq.2_Missense_Mutation_p.E722A|ZNF341_uc010ger.2_RNA|ZNF341_uc002wzz.2_Missense_Mutation_p.E239A	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	812					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GTGGGCGCGGAAACTGAGCTG	0.706													34	99					0	0	0.002522	0	0
SEMG1	6406	broad.mit.edu	37	20	43836821	43836821	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr20:43836821G>A	uc002xni.2	+	2	940	c.883G>A	c.(883-885)GAA>AAA	p.E295K	SEMG1_uc002xnj.2_Intron|SEMG2_uc010ggz.2_Intron|SEMG1_uc002xnh.2_Missense_Mutation_p.E295K	NM_003007	NP_002998	P04279	SEMG1_HUMAN	semenogelin I preproprotein	295	58 AA repeat 1.				insemination|sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(2)	2		Myeloproliferative disorder(115;0.0122)				AAGTACAGAAGAAAGACGACT	0.373													14	51					0	0	0.007413	0	0
SULF2	55959	broad.mit.edu	37	20	46311865	46311865	+	Missense_Mutation	SNP	C	T	T	rs147131391		TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr20:46311865C>T	uc002xto.2	-	7	1267	c.937G>A	c.(937-939)GTA>ATA	p.V313I	SULF2_uc002xtr.2_Missense_Mutation_p.V313I|SULF2_uc002xtq.2_Missense_Mutation_p.V313I	NM_018837	NP_061325	Q8IWU5	SULF2_HUMAN	sulfatase 2 isoform a precursor	313					bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						GCGGTGTATACGATGTACGTG	0.572													23	103					0	0	0.009535	0	0
ZNF831	128611	broad.mit.edu	37	20	57766256	57766256	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr20:57766256C>T	uc002yan.2	+	1	182	c.182C>T	c.(181-183)CCA>CTA	p.P61L		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	61	Pro-rich.					intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CTGCCCATCCCACTGTACCAC	0.701													7	29					0	0	0.006214	0	0
ZNF831	128611	broad.mit.edu	37	20	57766649	57766649	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr20:57766649G>A	uc002yan.2	+	1	575	c.575G>A	c.(574-576)CGG>CAG	p.R192Q		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	192	C2H2-type 2.					intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					AAGCACAGGCGGACGCAGACG	0.657													89	67					0	0	0.003610	0	0
SLC17A9	63910	broad.mit.edu	37	20	61598783	61598783	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr20:61598783G>A	uc002yea.3	+	13	1426	c.1242G>A	c.(1240-1242)GGG>GGA	p.G414G	SLC17A9_uc002ydz.3_Silent_p.G408G|SLC17A9_uc011aap.1_3'UTR	NM_022082	NP_071365	Q9BYT1	S17A9_HUMAN	vesicular nucleotide transporter SLC17A9	414	Helical; (Potential).				exocytosis|transmembrane transport	integral to membrane	transporter activity			ovary(1)|skin(1)	2						GCAACCTGGGGCTGTGCACCT	0.602													157	100					0	0	0.003610	0	0
PRIC285	85441	broad.mit.edu	37	20	62197555	62197555	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr20:62197555T>C	uc002yfm.2	-	9	3512	c.2620A>G	c.(2620-2622)ACT>GCT	p.T874A	PRIC285_uc002yfl.1_Missense_Mutation_p.T305A	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	874					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			GTGTGCACAGTGCTGAGCACC	0.701													3	13					0	0	0.004672	0	0
ZBTB46	140685	broad.mit.edu	37	20	62421379	62421379	+	Silent	SNP	A	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr20:62421379A>C	uc002ygv.1	-	2	933	c.732T>G	c.(730-732)CCT>CCG	p.P244P	ZBTB46_uc002ygu.2_RNA	NM_025224	NP_079500	Q86UZ6	ZBT46_HUMAN	zinc finger and BTB domain containing 46	244					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)|ovary(1)	2	all_cancers(38;2.09e-12)|all_epithelial(29;3.8e-14)|Lung NSC(23;7.61e-10)|all_lung(23;2.64e-09)					CCTTGGCAGAAGGCAGCTCGC	0.567													19	59					0	0	0.010504	0	0
MRPL39	54148	broad.mit.edu	37	21	26976114	26976114	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr21:26976114C>T	uc002ylo.2	-	3	428	c.414G>A	c.(412-414)GTG>GTA	p.V138V	MRPL39_uc002yln.2_Silent_p.V138V	NM_017446	NP_059142	Q9NYK5	RM39_HUMAN	mitochondrial ribosomal protein L39 isoform a	138						mitochondrial ribosome	nucleotide binding				0						ATACCTTATTCACTTCTCCTG	0.358													18	30					0	0	0.006122	0	0
BACH1	571	broad.mit.edu	37	21	30693789	30693790	+	Missense_Mutation	DNP	TC	AG	AG			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr21:30693789_30693790TC>AG	uc002ynj.2	+	2	303_304	c.188_189TC>AG	c.(187-189)ATC>AAG	p.I63K	BACH1_uc002ynk.2_Missense_Mutation_p.I63K|BACH1_uc002ynl.2_RNA	NM_001186	NP_001177	O14867	BACH1_HUMAN	BTB and CNC homology 1 transcription factor	63	BTB.					nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|liver(1)	2						CACTCAAGAATCGTAGGCCAGG	0.475													24	47					0	0	0.004672	0	0
GRIK1	2897	broad.mit.edu	37	21	30961309	30961309	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr21:30961309G>C	uc002yno.1	-	11	1883	c.1419C>G	c.(1417-1419)GAC>GAG	p.D473E	GRIK1_uc002ynn.2_Missense_Mutation_p.D458E|GRIK1_uc011acs.1_Missense_Mutation_p.D473E|GRIK1_uc011act.1_Intron|GRIK1_uc010glq.1_Missense_Mutation_p.D316E	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	473	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	CTTCAAATCTGTCATTTCCAT	0.363													10	120					0	0	0.008291	0	0
COL6A2	1292	broad.mit.edu	37	21	47531996	47531996	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr21:47531996C>T	uc002zia.1	+	3	301	c.219C>T	c.(217-219)TTC>TTT	p.F73F	COL6A2_uc002zhy.1_Silent_p.F73F|COL6A2_uc002zhz.1_Silent_p.F73F|COL6A2_uc002zib.1_Intron	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	73	VWFA 1.|Nonhelical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		TGAAGCAGTTCGTGCCGCAGT	0.617													31	49					0	0	0.006230	0	0
COL6A2	1292	broad.mit.edu	37	21	47545777	47545777	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr21:47545777C>T	uc002zia.1	+	26	2130	c.2048C>T	c.(2047-2049)TCC>TTC	p.S683F	COL6A2_uc002zhy.1_Missense_Mutation_p.S683F|COL6A2_uc002zhz.1_Missense_Mutation_p.S683F|COL6A2_uc002zib.1_Missense_Mutation_p.S89F|COL6A2_uc002zic.1_5'Flank	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	683	VWFA 2.|Nonhelical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		CGTATCGACTCCCTGTCGAGC	0.622													23	45					0	0	0.006320	0	0
CCT8L2	150160	broad.mit.edu	37	22	17072801	17072801	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr22:17072801C>T	uc002zlp.1	-	1	900	c.640G>A	c.(640-642)GAG>AAG	p.E214K		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	214					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				CAGGAATCCTCCAGTGTCCCC	0.617													47	126					0	0	0.003610	0	0
XKR3	150165	broad.mit.edu	37	22	17280779	17280779	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr22:17280779G>A	uc002zlv.2	-	3	569	c.471C>T	c.(469-471)TTC>TTT	p.F157F	XKR3_uc011agf.1_Silent_p.F157F	NM_175878	NP_787074	Q5GH77	XKR3_HUMAN	X Kell blood group precursor-related family,	157						integral to membrane|plasma membrane				large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				TCTGCTGCATGAAATTATCCC	0.398													134	126					0	0	0.003610	0	0
MICAL3	57553	broad.mit.edu	37	22	18300404	18300404	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr22:18300404G>A	uc002zng.3	-	26	5376	c.5023C>T	c.(5023-5025)CCG>TCG	p.P1675S	MICAL3_uc011agl.1_Missense_Mutation_p.P1591S|MICAL3_uc010gre.1_5'Flank	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	1675						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		TCCGACGGCGGGGAGAGGACC	0.657													16	30					0	0	0.004990	0	0
COMT	1312	broad.mit.edu	37	22	19956080	19956080	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr22:19956080G>A	uc002zqu.2	+	6	886	c.637G>A	c.(637-639)GGG>AGG	p.G213R	COMT_uc002zqv.2_Missense_Mutation_p.G213R|COMT_uc002zqw.2_Missense_Mutation_p.G213R|COMT_uc011ahd.1_Missense_Mutation_p.G213R|COMT_uc002zqx.2_Missense_Mutation_p.G213R	NM_000754	NP_000745	P21964	COMT_HUMAN	catechol-O-methyltransferase isoform MB-COMT	213					neurotransmitter biosynthetic process|neurotransmitter catabolic process|xenobiotic metabolic process	cytosol|integral to membrane|intracellular membrane-bounded organelle|microsome|plasma membrane|soluble fraction	catechol O-methyltransferase activity|magnesium ion binding|protein binding			ovary(1)	1	Colorectal(54;0.0993)				Carbidopa(DB00190)|Conjugated Estrogens(DB00286)|Diethylstilbestrol(DB00255)|Dobutamine(DB00841)|Dopamine(DB00988)|Entacapone(DB00494)|Folic Acid(DB00158)|L-Valine(DB00161)|Levodopa(DB01235)|Methyldopa(DB00968)|Modafinil(DB00745)|Morphine(DB00295)|S-Adenosylmethionine(DB00118)|Tolcapone(DB00323)	GCTGCGGAAGGGGACAGTGCT	0.622													39	45					0	0	0.003610	0	0
KLHL22	84861	broad.mit.edu	37	22	20825720	20825720	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr22:20825720T>A	uc002zsl.1	-	3	419	c.310A>T	c.(310-312)ATC>TTC	p.I104F	KLHL22_uc011ahr.1_Intron|KLHL22_uc002zsm.1_Missense_Mutation_p.I104F	NM_032775	NP_116164	Q53GT1	KLH22_HUMAN	kelch-like	104	BTB.				cell division	Cul3-RING ubiquitin ligase complex				lung(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			AAATGTAGGATTTGGCACATA	0.507													95	99					0	0	0.003610	0	0
LOC96610	96610	broad.mit.edu	37	22	22712561	22712561	+	RNA	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr22:22712561G>A	uc011aim.1	+	41		c.4349G>A								Parts of antibodies, mostly variable regions.												0						CCGGTCCGAGGATGAGGCTGA	0.592													164	154					0	0	0.003610	0	0
LOC96610	96610	broad.mit.edu	37	22	23192830	23192830	+	Splice_Site	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr22:23192830C>T	uc011aim.1	+	311		c.13773_splice	c.e311+2							Parts of antibodies, mostly variable regions.												0						CAGTGATGAGCCCACAGTGAC	0.537													10	5					0	0	0.000978	0	0
IGLL1	3543	broad.mit.edu	37	22	23915708	23915708	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr22:23915708G>A	uc002zxd.2	-	3	505	c.387C>T	c.(385-387)AAC>AAT	p.N129N	IGLL1_uc002zxe.2_3'UTR	NM_020070	NP_064455	P15814	IGLL1_HUMAN	immunoglobulin lambda-like polypeptide 1 isoform	129	C region (By similarity to lambda light- chain).|Ig-like C1-type.				immune response	extracellular region|membrane					0						GTGTAGCCTTGTTGGCTTGGA	0.587													5	122					0	0	0.001984	0	0
PIWIL3	440822	broad.mit.edu	37	22	25115475	25115475	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr22:25115475C>T	uc003abd.1	-	21	3030	c.2613G>A	c.(2611-2613)CCG>CCA	p.P871P	PIWIL3_uc011ajx.1_Silent_p.P753P|PIWIL3_uc011ajy.1_Silent_p.P753P|PIWIL3_uc010gut.1_Silent_p.P862P	NM_001008496	NP_001008496	Q7Z3Z3	PIWL3_HUMAN	piwi-like 3	871					cell differentiation|gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatogenesis	cytoplasm	RNA binding			ovary(3)|central_nervous_system(1)	4						AGGAACGATTCGGTTCCTGGT	0.483													86	74					0	0	0.003610	0	0
NEFH	4744	broad.mit.edu	37	22	29886423	29886423	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr22:29886423G>A	uc003afo.2	+	4	2865	c.2794G>A	c.(2794-2796)GAA>AAA	p.E932K	NEFH_uc003afp.2_5'UTR	NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	938	Tail.				cell death|nervous system development	neurofilament					0						AGCCAAGAAGGAACCAGATGA	0.522													8	14					0	0	0.004482	0	0
INPP5J	27124	broad.mit.edu	37	22	31521793	31521793	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr22:31521793G>A	uc003aju.3	+	2	1160	c.1068G>A	c.(1066-1068)CCG>CCA	p.P356P	INPP5J_uc010gwf.2_Silent_p.P356P|INPP5J_uc003ajv.3_Intron|INPP5J_uc003ajs.3_Intron|INPP5J_uc011alk.1_Silent_p.P289P|INPP5J_uc010gwg.2_Intron|INPP5J_uc003ajw.2_Intron|INPP5J_uc003ajt.3_Intron|INPP5J_uc003ajx.2_5'Flank|INPP5J_uc003ajy.2_5'Flank|INPP5J_uc003ajz.2_5'Flank	NM_001002837	NP_001002837	Q15735	PI5PA_HUMAN	phosphatidylinositol (4,5) bisphosphate	356	Pro-rich.					cytoplasm|ruffle	inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol-polyphosphate 5-phosphatase activity|SH3 domain binding			skin(1)	1						GCCACTCCCCGAATCGCTCTC	0.682													5	7					0	0	0.000602	0	0
INPP5J	27124	broad.mit.edu	37	22	31529469	31529469	+	Missense_Mutation	SNP	G	C	C	rs5997883		TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr22:31529469G>C	uc003aju.3	+	11	2501	c.2409G>C	c.(2407-2409)CAG>CAC	p.Q803H	INPP5J_uc003ajv.3_Missense_Mutation_p.Q436H|INPP5J_uc003ajs.3_Missense_Mutation_p.Q436H|INPP5J_uc011alk.1_Missense_Mutation_p.Q736H|INPP5J_uc010gwg.2_Missense_Mutation_p.Q368H|INPP5J_uc003ajw.2_Intron|INPP5J_uc003ajt.3_Missense_Mutation_p.Q435H|INPP5J_uc003ajx.2_Missense_Mutation_p.Q168H|INPP5J_uc003ajy.2_Intron|INPP5J_uc003ajz.2_Missense_Mutation_p.Q243H	NM_001002837	NP_001002837	Q15735	PI5PA_HUMAN	phosphatidylinositol (4,5) bisphosphate	803	Required for ruffle localization (By similarity).					cytoplasm|ruffle	inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol-polyphosphate 5-phosphatase activity|SH3 domain binding			skin(1)	1						ATACCTACCAGGTACTTAAAA	0.537													24	26					0	0	0.007291	0	0
MPST	4357	broad.mit.edu	37	22	37420583	37420583	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr22:37420583C>T	uc003aqj.2	+	3	739	c.327C>T	c.(325-327)TCC>TCT	p.S109S	MPST_uc003aqi.1_Silent_p.S109S|MPST_uc003aqm.2_Silent_p.S109S|MPST_uc011amu.1_Silent_p.S129S|MPST_uc003aql.2_Silent_p.S109S|MPST_uc003aqn.2_Silent_p.S109S|MPST_uc003aqo.2_Silent_p.S109S	NM_001130517	NP_001123989	P25325	THTM_HUMAN	mercaptopyruvate sulfurtransferase isoform 2	109	Rhodanese 1.				cyanate catabolic process|response to toxin		3-mercaptopyruvate sulfurtransferase activity|thiosulfate sulfurtransferase activity				0						GCCTCTACTCCGCCCCGCGCG	0.716													3	5					0	0	0.009096	0	0
TRIOBP	11078	broad.mit.edu	37	22	38131150	38131150	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr22:38131150G>A	uc003atr.2	+	9	5078	c.4807G>A	c.(4807-4809)GAT>AAT	p.D1603N	TRIOBP_uc003atu.2_Missense_Mutation_p.D1431N	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	1603					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					TGGACACAGGGATGACCTGGC	0.682											OREG0026548	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	34					0	0	0.003163	0	0
EP300	2033	broad.mit.edu	37	22	41572463	41572463	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr22:41572463C>T	uc003azl.3	+	30	5387	c.4992C>T	c.(4990-4992)GAC>GAT	p.D1664D		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	1664	Binding region for E1A adenovirus.|ZZ-type.				apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						AGAGCCAGGACCGCTTTGTCT	0.582			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				55	68					0	0	0.003610	0	0
SCUBE1	80274	broad.mit.edu	37	22	43687051	43687051	+	Splice_Site	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr22:43687051C>T	uc003bdt.1	-	4	572	c.484_splice	c.e4+1	p.E162_splice	SCUBE1_uc003bdu.1_Splice_Site_p.E162_splice	NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1						adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				GCTGTACTCACCATTGGAGCG	0.582													9	10					0	0	0.001368	0	0
SMC1B	27127	broad.mit.edu	37	22	45768171	45768171	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr22:45768171C>T	uc003bgc.2	-	13	2112	c.2060G>A	c.(2059-2061)GGT>GAT	p.G687D	SMC1B_uc003bgd.2_Missense_Mutation_p.G687D|SMC1B_uc003bge.1_Missense_Mutation_p.G470D	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	687	Potential.				chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		CTTCATTAAACCCTAAAAGGA	0.318													23	14					0	0	0.002780	0	0
CNTN4	152330	broad.mit.edu	37	3	3085306	3085306	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:3085306G>A	uc003bpc.2	+	22	2950	c.2729G>A	c.(2728-2730)TGG>TAG	p.W910*	CNTN4_uc003bpe.2_Nonsense_Mutation_p.W582*|CNTN4_uc003bpf.2_Nonsense_Mutation_p.W581*|CNTN4_uc003bpg.2_Nonsense_Mutation_p.W166*	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	910	Fibronectin type-III 4.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		AACATCATATGGAATTCATCA	0.358													32	49					0	0	0.008740	0	0
GRM7	2917	broad.mit.edu	37	3	7620708	7620708	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:7620708C>T	uc003bqm.2	+	8	2389	c.2115C>T	c.(2113-2115)ATC>ATT	p.I705I	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.I705I|GRM7_uc003bql.2_Silent_p.I705I|GRM7_uc003bqn.1_Silent_p.I288I|GRM7_uc010hch.1_Silent_p.I216I	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	705	Helical; Name=4; (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	AACTGGCAATCACTTCCAGTT	0.418													14	39					0	0	0.003163	0	0
ATP2B2	491	broad.mit.edu	37	3	10413585	10413585	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:10413585C>T	uc003bvt.2	-	12	2006	c.1567G>A	c.(1567-1569)GAG>AAG	p.E523K	ATP2B2_uc003bvv.2_Missense_Mutation_p.E478K|ATP2B2_uc003bvw.2_Missense_Mutation_p.E478K|ATP2B2_uc010hdo.2_Missense_Mutation_p.E228K	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	523	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						TCGGGGATCTCTTTATAGTGG	0.547													54	79					0	0	0.003610	0	0
VGLL4	9686	broad.mit.edu	37	3	11606380	11606380	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:11606380G>A	uc003bwf.2	-	4	734	c.368C>T	c.(367-369)TCC>TTC	p.S123F	VGLL4_uc010hdx.1_Missense_Mutation_p.S129F|VGLL4_uc003bwg.2_Missense_Mutation_p.S128F|VGLL4_uc010hdv.1_Missense_Mutation_p.S39F|VGLL4_uc010hdw.1_Missense_Mutation_p.S43F|VGLL4_uc011aun.1_Missense_Mutation_p.S64F	NM_014667	NP_055482	Q14135	VGLL4_HUMAN	vestigial like 4 isoform b	123					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1				LUSC - Lung squamous cell carcinoma(1;0.089)|Lung(1;0.111)		GCTGGGGAGGGAGGTGTACAG	0.711													24	27					0	0	0.008361	0	0
TIMP4	7079	broad.mit.edu	37	3	12195173	12195173	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:12195173G>A	uc003bwo.2	-	5	824	c.517C>T	c.(517-519)CCT>TCT	p.P173S	SYN2_uc003bwl.1_Intron|SYN2_uc003bwm.2_Intron|SYN2_uc003bwn.2_Intron	NM_003256	NP_003247	Q99727	TIMP4_HUMAN	tissue inhibitor of metalloproteinase 4	173							metal ion binding|metalloendopeptidase inhibitor activity				0						CACTCGTTAGGGGCCGAGATG	0.507													47	90					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	3	12299480	12299480	+	RNA	SNP	G	A	A	rs3211205	byFrequency	TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:12299480G>A	uc003bwp.1	-	1		c.473C>T				NR_003112				NR_003112																		CATAGGCAAGGAAATCCACAT	0.483													11	18					0	0	0.008291	0	0
EOMES	8320	broad.mit.edu	37	3	27760940	27760940	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:27760940T>G	uc003cdx.2	-	3	1069	c.1069A>C	c.(1069-1071)AAT>CAT	p.N357H	EOMES_uc003cdy.3_Missense_Mutation_p.N357H|EOMES_uc010hfn.2_Missense_Mutation_p.N357H|EOMES_uc011axc.1_Missense_Mutation_p.N62H	NM_005442	NP_005433	O95936	EOMES_HUMAN	eomesodermin	357	T-box.				CD8-positive, alpha-beta T cell differentiation involved in immune response|cell differentiation involved in embryonic placenta development|endoderm formation|mesoderm formation|mesodermal to mesenchymal transition involved in gastrulation|positive regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|breast(1)	4						GAACCAGTATTAGGAGACTCT	0.408													34	65					0	0	0.003755	0	0
SLC22A14	9389	broad.mit.edu	37	3	38357863	38357863	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:38357863C>T	uc010hhc.1	+	10	1623	c.1581C>T	c.(1579-1581)ATC>ATT	p.I527I	SLC22A14_uc003cib.2_Silent_p.I527I|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	527	Helical; (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		CTGGAGCCATCTTGTCCCTGA	0.627													50	66					0	0	0.003610	0	0
SCN11A	11280	broad.mit.edu	37	3	38888832	38888832	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:38888832G>A	uc011ays.1	-	26	4928	c.4729C>T	c.(4729-4731)CCT>TCT	p.P1577S		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1577	IV.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GCTATGCCAGGGAGGTGGCAG	0.438													30	51					0	0	0.003271	0	0
CCBP2	1238	broad.mit.edu	37	3	42906308	42906308	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:42906308C>T	uc003cme.2	+	3	493	c.314C>T	c.(313-315)TCC>TTC	p.S105F	CCBP2_uc003cmd.1_Missense_Mutation_p.S105F|CCBP2_uc003cmf.2_Missense_Mutation_p.S105F|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Intron	NM_001296	NP_001287	O00590	CCBP2_HUMAN	chemokine binding protein 2	105	Helical; Name=2; (Potential).				chemotaxis|immune response|multicellular organismal development	integral to plasma membrane	C-X-C chemokine receptor activity			lung(4)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.241)		TGGGGCATCTCCGTGGCCTGG	0.498													75	121					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	3	42982837	42982837	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:42982837C>T	uc003cmm.3	+	3	298	c.153C>T	c.(151-153)GCC>GCT	p.A51A	uc003cmn.3_Silent_p.A51A					SubName: Full=cDNA FLJ51974;																		AGGCTGTGGCCTTTGTAGGTA	0.517													6	11					0	0	0.001984	0	0
LTF	4057	broad.mit.edu	37	3	46490500	46490500	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:46490500C>T	uc003cpq.2	-	9	1104	c.1066G>A	c.(1066-1068)GAA>AAA	p.E356K	LTF_uc003fzr.2_Missense_Mutation_p.E312K|LTF_uc010hjh.2_Missense_Mutation_p.E356K|LTF_uc003cpr.2_Missense_Mutation_p.E343K	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	356					cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	GCAGCCACTTCCTCCTCACCT	0.662													18	41					0	0	0.003330	0	0
TMEM89	440955	broad.mit.edu	37	3	48658415	48658415	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:48658415C>T	uc011bbo.1	-	2	340	c.340G>A	c.(340-342)GCC>ACC	p.A114T		NM_001008269	NP_001008270	A2RUT3	TMM89_HUMAN	transmembrane protein 89 precursor	114	Cytoplasmic (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(193;0.000286)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)		GAGATTGGGGCCCGCCGTTTC	0.632													29	45					0	0	0.002445	0	0
CACNA2D3	55799	broad.mit.edu	37	3	55038833	55038833	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:55038833G>A	uc003dhf.2	+	32	2782	c.2734G>A	c.(2734-2736)GAA>AAA	p.E912K	CACNA2D3_uc003dhg.1_Missense_Mutation_p.E818K|CACNA2D3_uc003dhh.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	912	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		AGCCAACAAGGAAAGCAGCGA	0.458													30	48					0	0	0.007835	0	0
HESX1	8820	broad.mit.edu	37	3	57232422	57232422	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:57232422G>A	uc003din.3	-	3	790	c.456C>T	c.(454-456)ATC>ATT	p.I152I		NM_003865	NP_003856	Q9UBX0	HESX1_HUMAN	HESX homeobox 1	152	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0109)|Kidney(284;0.0126)		AAATTACCTGGATTCTGTCTT	0.279													8	22					0	0	0.004482	0	0
OR5H6	79295	broad.mit.edu	37	3	97983992	97983992	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:97983992G>T	uc003dsi.1	+	1	864	c.864G>T	c.(862-864)ATG>ATT	p.M288I		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						ACCAAGATATGATGGAGTCTC	0.413													16	26					1.1804e-14	1.20893e-14	0.003954	1	0
OR5K4	403278	broad.mit.edu	37	3	98073360	98073360	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:98073360C>T	uc011bgv.1	+	1	663	c.663C>T	c.(661-663)ATC>ATT	p.I221I		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	221	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						ATCTCTGCATCCTTTTGACTG	0.343													16	33					0	0	0.004007	0	0
ABI3BP	25890	broad.mit.edu	37	3	100497219	100497219	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:100497219C>T	uc003dun.2	-	26	2194	c.2109G>A	c.(2107-2109)GGG>GGA	p.G703G	ABI3BP_uc003duj.2_Silent_p.G283G|ABI3BP_uc003duk.2_Silent_p.G412G|ABI3BP_uc003dul.2_Silent_p.G533G|ABI3BP_uc011bhd.1_Silent_p.G657G|ABI3BP_uc003dum.2_Silent_p.G114G	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	703	Pro-rich.					extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						GGCGGCGAGTCCCTGGGATTG	0.398													14	39					0	0	0.004990	0	0
KALRN	8997	broad.mit.edu	37	3	124117547	124117547	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:124117547C>T	uc003ehg.2	+	13	2296	c.2169C>T	c.(2167-2169)GAC>GAT	p.D723D	KALRN_uc010hrv.1_Silent_p.D723D|KALRN_uc003ehf.1_Silent_p.D723D|KALRN_uc011bjy.1_Silent_p.D723D|KALRN_uc003ehh.1_Silent_p.D69D	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	723					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GCCACAGGGACTCGGCTGTGT	0.557													83	187					0	0	0.003610	0	0
KALRN	8997	broad.mit.edu	37	3	124438000	124438000	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:124438000G>A	uc003ehg.2	+	60	8771	c.8644G>A	c.(8644-8646)GAT>AAT	p.D2882N	KALRN_uc003ehk.2_Missense_Mutation_p.D1185N	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2881	Protein kinase.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CCCCTTCTTGGATGAGAGCAA	0.517													28	37					0	0	0.009535	0	0
UROC1	131669	broad.mit.edu	37	3	126220114	126220114	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:126220114C>T	uc003eiz.1	-	10	944	c.912G>A	c.(910-912)AGG>AGA	p.R304R	UROC1_uc010hsi.1_Silent_p.R364R	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	304					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		CCTTTTTTTTCCTTGCTTCCC	0.582													48	120					0	0	0.003610	0	0
TMEM108	66000	broad.mit.edu	37	3	133098691	133098691	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:133098691C>T	uc003eph.2	+	4	410	c.136C>T	c.(136-138)CCC>TCC	p.P46S	TMEM108_uc003epi.2_Missense_Mutation_p.P46S|TMEM108_uc003epj.1_Missense_Mutation_p.P46S|TMEM108_uc003epk.2_Intron|TMEM108_uc003epm.2_5'UTR	NM_023943	NP_076432	Q6UXF1	TM108_HUMAN	transmembrane protein 108 precursor	46	Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)	4						TTCAGGCACTCCCCCGGGAAC	0.587													104	146					0	0	0.003610	0	0
KY	339855	broad.mit.edu	37	3	134346612	134346612	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:134346612C>T	uc010hty.2	-	5	448	c.386G>A	c.(385-387)GGG>GAG	p.G129E	KY_uc011blw.1_Missense_Mutation_p.G129E|KY_uc011blx.1_Missense_Mutation_p.G108E|KY_uc003eqs.1_Missense_Mutation_p.G149E	NM_178554	NP_848649	Q8NBH2	KY_HUMAN	kyphoscoliosis peptidase	129						cytoskeleton|Z disc	peptidase activity			ovary(2)	2						GGCATCTTTCCCTCCAGGTTG	0.308													12	20					0	0	0.002450	0	0
EPHB1	2047	broad.mit.edu	37	3	134825302	134825302	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:134825302G>A	uc003eqt.2	+	4	1038	c.818G>A	c.(817-819)GGG>GAG	p.G273E	EPHB1_uc010htz.1_RNA|EPHB1_uc011bly.1_Missense_Mutation_p.G162R|EPHB1_uc003equ.2_5'UTR	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	273	Extracellular (Potential).|Cys-rich.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						TGCCCTGCAGGGACATTCAAG	0.562													18	33					0	0	0.002780	0	0
ATR	545	broad.mit.edu	37	3	142234333	142234334	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:142234333_142234334GG>AA	uc003eux.3	-	25	4528_4529	c.4406_4407CC>TT	c.(4405-4407)ACC>ATT	p.T1469I		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	1469					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						CAGACCAATCGGTTGACTTCTG	0.327								Other_conserved_DNA_damage_response_genes					15	16					0	0	0.004672	0	0
IGSF10	285313	broad.mit.edu	37	3	151164770	151164770	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:151164770C>T	uc011bod.1	-	4	2999	c.2999G>A	c.(2998-3000)AGT>AAT	p.S1000N		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1000					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GTTAACTGTACTATTTCTAGG	0.483													33	47					0	0	0.003271	0	0
SMC4	10051	broad.mit.edu	37	3	160120471	160120471	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:160120471C>T	uc003fdh.2	+	4	439	c.326C>T	c.(325-327)TCC>TTC	p.S109F	IFT80_uc003fda.2_Intron|SMC4_uc003fdf.1_RNA|SMC4_uc003fdg.1_Missense_Mutation_p.S109F|SMC4_uc010hwc.1_Intron|SMC4_uc003fdi.2_Missense_Mutation_p.S84F|SMC4_uc003fdj.2_Missense_Mutation_p.S109F|SMC4_uc010hwd.2_Missense_Mutation_p.S109F|uc011boz.1_5'Flank|MIR15B_hsa-mir-15b|MI0000438_5'Flank|uc003fdk.2_5'Flank|MIR16-2_hsa-mir-16-2|MI0000115_5'Flank	NM_001002800	NP_001002800	Q9NTJ3	SMC4_HUMAN	SMC4 structural maintenance of chromosomes	109					cell division|mitotic chromosome condensation	condensin complex|cytoplasm|nucleus	ATP binding|protein heterodimerization activity			ovary(1)|breast(1)	2			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			CAGCGCTTTTCCTGTATTATC	0.323													32	57					0	0	0.005524	0	0
TP63	8626	broad.mit.edu	37	3	189604206	189604206	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:189604206C>T	uc003fry.2	+	11	1462	c.1373C>T	c.(1372-1374)TCA>TTA	p.S458L	TP63_uc003frz.2_Missense_Mutation_p.S458L|TP63_uc010hzc.1_Missense_Mutation_p.S458L|TP63_uc003fsc.2_Missense_Mutation_p.S364L|TP63_uc003fsd.2_Missense_Mutation_p.S364L|TP63_uc010hzd.1_Missense_Mutation_p.S279L	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	458					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		TCTCCATCTTCATATGGTAAC	0.473									Hay-Wells_syndrome	HNSCC(45;0.13)			28	44					0	0	0.004878	0	0
LEPREL1	55214	broad.mit.edu	37	3	189704603	189704603	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:189704603C>T	uc011bsk.1	-	6	1550	c.1162G>A	c.(1162-1164)GGT>AGT	p.G388S	LEPREL1_uc003fsg.2_Missense_Mutation_p.G207S	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	388					collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	AACCCCAGACCTTCTGCAGCT	0.343													59	113					0	0	0.003610	0	0
ATP13A5	344905	broad.mit.edu	37	3	193042770	193042770	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:193042770C>T	uc011bsq.1	-	14	1557	c.1557G>A	c.(1555-1557)CAG>CAA	p.Q519Q		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	519					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		ATGGCACAGCCTGGCCTGAGG	0.502													26	55					0	0	0.003330	0	0
ATP13A4	84239	broad.mit.edu	37	3	193176921	193176921	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:193176921C>T	uc003ftd.2	-	14	1731	c.1623G>A	c.(1621-1623)GGG>GGA	p.G541G	ATP13A4_uc003fte.1_Silent_p.G541G|ATP13A4_uc011bsr.1_Silent_p.G12G|ATP13A4_uc010hzi.2_RNA|ATP13A4_uc003ftf.3_Silent_p.G247G	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	541	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		CCTGGATGGTCCCATCAAGAA	0.547													32	61					0	0	0.006999	0	0
MUC4	4585	broad.mit.edu	37	3	195506005	195506005	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr3:195506005A>C	uc011bto.1	-	3	12522	c.12062T>G	c.(12061-12063)ATC>AGC	p.I4021S	MUC4_uc003fva.2_5'Flank|MUC4_uc003fvb.2_5'Flank|MUC4_uc003fvc.2_5'Flank|MUC4_uc003fvd.2_5'Flank|MUC4_uc003fve.2_5'Flank|MUC4_uc010hzr.2_5'Flank|MUC4_uc011btf.1_5'Flank|MUC4_uc011btg.1_5'Flank|MUC4_uc011bth.1_5'Flank|MUC4_uc011bti.1_5'Flank|MUC4_uc011btj.1_5'Flank|MUC4_uc011btk.1_5'Flank|MUC4_uc011btl.1_5'Flank|MUC4_uc011btm.1_5'Flank|MUC4_uc011btn.1_5'Flank|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		TGAGGAAGGGATGGTGACAGG	0.587													2	2					0	0	0.004672	0	0
HTT	3064	broad.mit.edu	37	4	3240564	3240564	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:3240564G>A	uc011bvq.1	+	67	9225	c.9080G>A	c.(9079-9081)AGC>AAC	p.S3027N		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	3025					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		ACTCTGCACAGCACCGGGCAG	0.677													6	40					0	0	0.000978	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6083350	6083350	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:6083350C>T	uc003giu.3	-	6	1363	c.1087G>A	c.(1087-1089)GAA>AAA	p.E363K	JAKMIP1_uc010idb.1_Missense_Mutation_p.E363K|JAKMIP1_uc010idc.1_Missense_Mutation_p.E198K|JAKMIP1_uc010idd.1_Missense_Mutation_p.E363K|JAKMIP1_uc011bwc.1_Missense_Mutation_p.E198K|JAKMIP1_uc003giv.3_Missense_Mutation_p.E363K|JAKMIP1_uc010ide.2_Missense_Mutation_p.E363K	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	363	Potential.|Mediates association with microtubules.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						TCCACGTTTTCCCGCGTGAGG	0.522													31	78					0	0	0.004289	0	0
CPZ	8532	broad.mit.edu	37	4	8607826	8607826	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:8607826C>A	uc003glm.2	+	5	946	c.820C>A	c.(820-822)CCC>ACC	p.P274T	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_Missense_Mutation_p.P137T|CPZ_uc003glo.2_Missense_Mutation_p.P263T|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	274					proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						GCTTGGTAACCCCCGCATCCA	0.617													33	65					9.88483e-10	1.00629e-09	0.007835	1	0
KLB	152831	broad.mit.edu	37	4	39409050	39409050	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:39409050G>A	uc003gua.2	+	1	578	c.481G>A	c.(481-483)GAT>AAT	p.D161N	KLB_uc011byj.1_Missense_Mutation_p.D161N	NM_175737	NP_783864	Q86Z14	KLOTB_HUMAN	klotho beta	161	Extracellular (Potential).|Glycosyl hydrolase-1 1.				carbohydrate metabolic process	integral to membrane|plasma membrane	cation binding|fibroblast growth factor binding|hydrolase activity, hydrolyzing O-glycosyl compounds			skin(1)	1						GCTTTTCCCCGATGGAATAGT	0.378													31	39					0	0	0.002096	0	0
YIPF7	285525	broad.mit.edu	37	4	44624578	44624578	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:44624578G>A	uc010ifx.1	-	6	713	c.696C>T	c.(694-696)ATC>ATT	p.I232I		NM_182592	NP_872398	Q8N8F6	YIPF7_HUMAN	Yip1 domain family, member 7	232	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane					0						GGGATGACATGATTCCAAAGA	0.458													22	50					0	0	0.007291	0	0
GABRA2	2555	broad.mit.edu	37	4	46305590	46305590	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:46305590C>T	uc003gxc.3	-	7	1416	c.743G>A	c.(742-744)AGA>AAA	p.R248K	GABRA2_uc010igc.2_Missense_Mutation_p.R248K|GABRA2_uc011bzc.1_Missense_Mutation_p.R193K|GABRA2_uc003gxe.2_Missense_Mutation_p.R248K	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	248	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CCCAATTTTTCTTTTCAGGTG	0.363													31	36					0	0	0.005524	0	0
OCIAD1	54940	broad.mit.edu	37	4	48851964	48851964	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:48851964T>C	uc003gyo.2	+	6	499	c.242T>C	c.(241-243)CTT>CCT	p.L81P	OCIAD1_uc011bzk.1_RNA|OCIAD1_uc003gyr.2_Missense_Mutation_p.L81P|OCIAD1_uc003gyp.2_Missense_Mutation_p.L81P|OCIAD1_uc003gys.2_Missense_Mutation_p.L81P|OCIAD1_uc003gyq.2_Missense_Mutation_p.L81P|OCIAD1_uc010igk.2_Missense_Mutation_p.L86P	NM_017830	NP_060300	Q9NX40	OCAD1_HUMAN	OCIA domain containing 1 isoform 1	81	OCIA.					endosome	protein binding				0						TACAAATAAGTTGCTTGTATC	0.303													10	29					0	0	0.001855	0	0
LNX1	84708	broad.mit.edu	37	4	54439916	54439916	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:54439916T>G	uc003hag.3	-	2	510	c.254A>C	c.(253-255)CAG>CCG	p.Q85P	PDGFRA_uc003haa.2_Intron|LNX1_uc003hah.3_RNA	NM_001126328	NP_001119800	Q8TBB1	LNX1_HUMAN	ligand of numb-protein X 1 isoform a	85						cytoplasm	zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_neural(26;0.153)		GBM - Glioblastoma multiforme(3;8.2e-46)|LUSC - Lung squamous cell carcinoma(32;0.0134)			CTTGCAGTGCTGCAGAACCAG	0.572													3	26					0	0	0.009096	0	0
UGT2B10	7365	broad.mit.edu	37	4	69696590	69696590	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:69696590G>A	uc003hee.2	+	6	1605	c.1580G>A	c.(1579-1581)AGG>AAG	p.R527K	UGT2B10_uc011cam.1_Missense_Mutation_p.R443K	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	527					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						AAGGGAAAAAGGGATTAGTTA	0.378													51	28					0	0	0.003610	0	0
CXCL10	3627	broad.mit.edu	37	4	76943561	76943561	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:76943561G>A	uc003hjl.3	-	3	306	c.236C>T	c.(235-237)TCG>TTG	p.S79L	ART3_uc003hji.2_Intron|ART3_uc003hjj.2_Intron|ART3_uc003hjk.2_Intron	NM_001565	NP_001556	P02778	CXL10_HUMAN	small inducible cytokine B10 precursor	79					blood circulation|cell surface receptor linked signaling pathway|cell-cell signaling|chemotaxis|inflammatory response|muscle organ development|positive regulation of cell proliferation	extracellular space	cAMP-dependent protein kinase regulator activity|chemokine activity				0			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			GATGGCCTTCGATTCTGGATT	0.383													42	114					0	0	0.003610	0	0
HERC6	55008	broad.mit.edu	37	4	89326027	89326027	+	Splice_Site	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:89326027G>A	uc011cdi.1	+	9	1276	c.1093_splice	c.e9-1	p.D365_splice	HERC6_uc011cdj.1_Splice_Site_p.D365_splice|HERC6_uc011cdk.1_Intron|HERC6_uc011cdl.1_Intron	NM_017912	NP_060382	Q8IVU3	HERC6_HUMAN	hect domain and RLD 6 isoform 1						protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytosol	ubiquitin-protein ligase activity			lung(3)|ovary(1)|kidney(1)	5		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000222)		CTTCCCTGAAGGATACTAGTT	0.453													9	63					0	0	0.008291	0	0
HERC5	51191	broad.mit.edu	37	4	89389521	89389521	+	Nonsense_Mutation	SNP	T	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:89389521T>A	uc003hrt.2	+	8	1235	c.1082T>A	c.(1081-1083)TTA>TAA	p.L361*	HERC5_uc011cdm.1_5'UTR	NM_016323	NP_057407	Q9UII4	HERC5_HUMAN	hect domain and RLD 5	361	RCC1 5.				innate immune response|ISG15-protein conjugation|negative regulation of type I interferon production|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cyclin-dependent protein kinase activity|regulation of defense response to virus|response to virus	cytosol|perinuclear region of cytoplasm	ISG15 ligase activity|protein binding|ubiquitin-protein ligase activity			ovary(4)|lung(3)|skin(2)	9		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000209)		GAAAAGGAGTTAATAATGATT	0.343													42	27					0	0	0.003610	0	0
TACR3	6870	broad.mit.edu	37	4	104640625	104640625	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:104640625G>A	uc003hxe.1	-	1	351	c.208C>T	c.(208-210)CCC>TCC	p.P70S		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	70	Extracellular (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		TTGGCCCAGGGCTGGGAGGGC	0.652													26	75					0	0	0.005443	0	0
LRIT3	345193	broad.mit.edu	37	4	110789085	110789085	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:110789085C>T	uc003hzx.3	+	2	936	c.743C>T	c.(742-744)TCG>TTG	p.S248L	LRIT3_uc003hzw.3_Missense_Mutation_p.S110L	NM_198506	NP_940908	Q3SXY7	LRIT3_HUMAN	leucine-rich repeat, immunoglobulin-like and	248	Ig-like.					integral to membrane					0				OV - Ovarian serous cystadenocarcinoma(123;0.0011)		TCTGACAGCTCGCCAGTTAAT	0.438													37	145					0	0	0.003610	0	0
ALPK1	80216	broad.mit.edu	37	4	113351887	113351887	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:113351887C>T	uc003iap.3	+	11	1463	c.1184C>T	c.(1183-1185)TCC>TTC	p.S395F	ALPK1_uc003ian.3_Missense_Mutation_p.S395F|ALPK1_uc011cfx.1_Missense_Mutation_p.S317F|ALPK1_uc003iao.3_Intron|ALPK1_uc010imo.2_Missense_Mutation_p.S223F	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	395							ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		TTCAGCACTTCCTCCAGAAGT	0.478													70	41					0	0	0.003610	0	0
ANK2	287	broad.mit.edu	37	4	114275702	114275702	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:114275702C>T	uc003ibe.3	+	38	6028	c.5928C>T	c.(5926-5928)TCC>TCT	p.S1976S	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_5'Flank|ANK2_uc011cgb.1_Silent_p.S1991S	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	1943	Repeat-rich region.|Repeat A.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CACCTGTATCCCCCACTTCAA	0.483													28	172					0	0	0.002096	0	0
TBC1D9	23158	broad.mit.edu	37	4	141600839	141600839	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:141600839G>A	uc010ioj.2	-	4	791	c.519C>T	c.(517-519)GTC>GTT	p.V173V		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	173	GRAM 1.					intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				CCTGACGGGGGACCTTCCCCT	0.423													27	21					0	0	0.003755	0	0
SMAD1	4086	broad.mit.edu	37	4	146463845	146463845	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:146463845G>A	uc003ikc.2	+	4	1186	c.770G>A	c.(769-771)AGA>AAA	p.R257K	SMAD1_uc003ikd.2_Missense_Mutation_p.R257K|SMAD1_uc010iov.2_Missense_Mutation_p.R257K|SMAD1_uc011cic.1_Intron	NM_005900	NP_005891	Q15797	SMAD1_HUMAN	Sma- and Mad-related protein 1	257					BMP signaling pathway|embryonic pattern specification|primary miRNA processing|SMAD protein complex assembly|transforming growth factor beta receptor signaling pathway	cytosol|integral to membrane|nuclear inner membrane	co-SMAD binding|I-SMAD binding|identical protein binding|protein kinase binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity			ovary(1)	1	all_hematologic(180;0.151)					GAAATCAACAGAGGAGGTAAA	0.453													48	33					0	0	0.003610	0	0
POU4F2	5458	broad.mit.edu	37	4	147561243	147561243	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:147561243C>T	uc003ikv.2	+	2	761	c.513C>T	c.(511-513)CAC>CAT	p.H171H		NM_004575	NP_004566	Q12837	PO4F2_HUMAN	Brn3b POU domain transcription factor	171	Poly-His.			Missing: Absent from nuclear speckle; no change in transcriptional activity.	estrogen receptor signaling pathway|MAPKKK cascade|negative regulation of transcription from RNA polymerase II promoter	nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			breast(1)	1	all_hematologic(180;0.151)					CGGGCACGcaccaccaccacc	0.552													5	48					0	0	0.000602	0	0
TMEM154	201799	broad.mit.edu	37	4	153573856	153573856	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:153573856G>A	uc003imw.1	-	2	394	c.288C>T	c.(286-288)TTC>TTT	p.F96F		NM_152680	NP_689893	Q6P9G4	TM154_HUMAN	transmembrane protein 154 precursor	96	Helical; (Potential).					integral to membrane					0	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)				ATGTTGCAAGGAATACCACGG	0.318													9	47					0	0	0.006214	0	0
TLR2	7097	broad.mit.edu	37	4	154624818	154624818	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:154624818G>A	uc003inq.2	+	3	978	c.759G>A	c.(757-759)AAG>AAA	p.K253K	TLR2_uc003inr.2_Silent_p.K253K|TLR2_uc003ins.2_Silent_p.K253K	NM_003264	NP_003255	O60603	TLR2_HUMAN	toll-like receptor 2 precursor	253	Extracellular (Potential).				cellular response to diacyl bacterial lipopeptide|cellular response to lipoteichoic acid|cellular response to triacyl bacterial lipopeptide|detection of diacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|I-kappaB phosphorylation|induction of apoptosis|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of interferon-beta production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|positive regulation of Wnt receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytoplasm|integral to plasma membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	Gram-positive bacterial cell surface binding|lipopolysaccharide receptor activity|peptidoglycan binding|protein heterodimerization activity|transmembrane receptor activity|triacyl lipopeptide binding			ovary(1)|lung(1)|breast(1)	3	all_hematologic(180;0.093)	Renal(120;0.117)				TGATTAAAAAGTTTACATTTA	0.323													10	17					0	0	0.006214	0	0
GRIA2	2891	broad.mit.edu	37	4	158254467	158254467	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:158254467A>C	uc003ipm.3	+	8	1576	c.1117A>C	c.(1117-1119)ATT>CTT	p.I373L	GRIA2_uc011cit.1_Missense_Mutation_p.I326L|GRIA2_uc003ipl.3_Missense_Mutation_p.I373L|GRIA2_uc003ipk.3_Missense_Mutation_p.I326L|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	373	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	AAACTATACAATTAACATCAT	0.383													14	45					0	0	0.004007	0	0
FSTL5	56884	broad.mit.edu	37	4	162306951	162306951	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:162306951T>G	uc003iqh.2	-	16	2928	c.2492A>C	c.(2491-2493)GAG>GCG	p.E831A	FSTL5_uc003iqi.2_Missense_Mutation_p.E830A|FSTL5_uc010iqv.2_Missense_Mutation_p.E821A|uc010iqu.1_Intron	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	831						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		TTCAGTGATCTCACAGTTTAA	0.393													75	60					0	0	0.003610	0	0
NPY5R	4889	broad.mit.edu	37	4	164271592	164271592	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:164271592T>A	uc003iqn.2	+	4	349	c.167T>A	c.(166-168)TTT>TAT	p.F56Y		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	56	Helical; Name=1; (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				CTTCTTGGCTTTATGGGGAAT	0.383													85	49					0	0	0.003610	0	0
TLL1	7092	broad.mit.edu	37	4	166916254	166916254	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:166916254G>A	uc003irh.1	+	5	1203	c.556G>A	c.(556-558)GAA>AAA	p.E186K	TLL1_uc011cjn.1_Missense_Mutation_p.E186K|TLL1_uc011cjo.1_Missense_Mutation_p.E10K	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	186	Metalloprotease (By similarity).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		GAGGCACTGGGAAAAGCACAC	0.448													116	79					0	0	0.003610	0	0
GALNTL6	442117	broad.mit.edu	37	4	173852374	173852374	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:173852374G>A	uc003isv.2	+	9	1840	c.1104G>A	c.(1102-1104)AGG>AGA	p.R368R		NM_001034845	NP_001030017	Q49A17	GLTL6_HUMAN	N-acetylgalactosaminyltransferase-like 6	368	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(2)|ovary(1)|skin(1)	4						ATATCTACAGGAAGTACGTTC	0.423													41	186					0	0	0.003610	0	0
GPM6A	2823	broad.mit.edu	37	4	176556176	176556176	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:176556176C>T	uc003iuf.2	-	7	1521	c.717G>A	c.(715-717)TGG>TGA	p.W239*	GPM6A_uc011ckj.1_Nonsense_Mutation_p.W232*|GPM6A_uc003iug.2_Nonsense_Mutation_p.W239*|GPM6A_uc003iuh.2_Nonsense_Mutation_p.W228*	NM_201591	NP_963885	P51674	GPM6A_HUMAN	glycoprotein M6A isoform 2	239	Cytoplasmic (Potential).					cell surface|integral to membrane					0		Breast(14;7.35e-05)|Melanoma(52;0.00909)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;9.21e-19)|Epithelial(43;3.01e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.02e-09)|STAD - Stomach adenocarcinoma(60;0.00083)|GBM - Glioblastoma multiforme(59;0.00168)|LUSC - Lung squamous cell carcinoma(193;0.0388)		TCACATAGGCCCAGTTGGCAG	0.433													5	50					0	0	0.001984	0	0
SORBS2	8470	broad.mit.edu	37	4	186544571	186544571	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr4:186544571C>T	uc003iyl.2	-	13	2858	c.2000G>A	c.(1999-2001)CGA>CAA	p.R667Q	SORBS2_uc003iyh.2_Intron|SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Missense_Mutation_p.R767Q|SORBS2_uc003iyn.1_Intron|SORBS2_uc011cku.1_Intron|SORBS2_uc011ckv.1_Missense_Mutation_p.R571Q|SORBS2_uc003iyd.2_Intron|SORBS2_uc003iye.2_Intron|SORBS2_uc003iya.2_Intron|SORBS2_uc003iyb.2_Intron|SORBS2_uc003iyc.2_Intron|SORBS2_uc003iyg.2_Missense_Mutation_p.R781Q|SORBS2_uc003iyf.2_Intron|SORBS2_uc003iyo.1_Intron	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	667						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		TGTGGTAAATCGAGTGTAGGA	0.393													24	107					0	0	0.007291	0	0
LRRC14B	389257	broad.mit.edu	37	5	195069	195069	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:195069G>A	uc003jal.1	+	2	1174	c.1146G>A	c.(1144-1146)CTG>CTA	p.L382L		NM_001080478	NP_001073947	A6NHZ5	LR14B_HUMAN	leucine rich repeat containing 14B	382										skin(1)	1						TGCTGATCCTGGGCCTGAGCC	0.667													5	22					0	0	0.001984	0	0
BRD9	65980	broad.mit.edu	37	5	876234	876234	+	Silent	SNP	C	T	T	rs149025034	byFrequency	TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:876234C>T	uc003jbq.2	-	12	1532	c.1365G>A	c.(1363-1365)ACG>ACA	p.T455T	BRD9_uc003jbl.2_Silent_p.T339T|BRD9_uc003jbm.2_RNA|BRD9_uc003jbn.2_RNA|BRD9_uc011cmb.1_Silent_p.T402T|BRD9_uc003jbo.2_Silent_p.T359T|BRD9_uc003jbp.2_Silent_p.T116T|BRD9_uc011cmc.1_RNA	NM_023924	NP_076413	Q9H8M2	BRD9_HUMAN	bromodomain containing 9 isoform 1	455							nucleic acid binding				0			Epithelial(17;0.00202)|OV - Ovarian serous cystadenocarcinoma(19;0.00353)|all cancers(22;0.00815)|Lung(60;0.185)			GCTGGAAGAGCGTCCTAGAGT	0.632													16	66					0	0	0.010504	0	0
DNAH5	1767	broad.mit.edu	37	5	13737548	13737548	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:13737548C>T	uc003jfd.2	-	66	11310	c.11268G>A	c.(11266-11268)AGG>AGA	p.R3756R	DNAH5_uc003jfc.2_Intron	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3756	Potential.|AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTTCCTTCATCCTTCTTTTGT	0.373									Kartagener_syndrome				60	15					0	0	0.003610	0	0
DNAH5	1767	broad.mit.edu	37	5	13919443	13919443	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:13919443G>A	uc003jfd.2	-	7	859	c.817C>T	c.(817-819)CAG>TAG	p.Q273*	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	273	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTCAGCAGCTGATTGTTTTCA	0.463									Kartagener_syndrome				224	33					0	0	0.003610	0	0
CDH9	1007	broad.mit.edu	37	5	26915810	26915810	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:26915810C>T	uc003jgs.1	-	3	620	c.451G>A	c.(451-453)GAT>AAT	p.D151N	CDH9_uc010iug.2_Missense_Mutation_p.D151N	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	151	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						TCATTGATATCATGTATTTTA	0.383													139	26					0	0	0.003610	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33527455	33527455	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:33527455C>T	uc003jia.1	-	24	4786	c.4623G>A	c.(4621-4623)AAG>AAA	p.K1541K	ADAMTS12_uc010iuq.1_Silent_p.K1456K	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1541	PLAC.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						ACAGTTTGTCCTTAGTGCAAA	0.428										HNSCC(64;0.19)			13	103					0	0	0.003163	0	0
PRLR	5618	broad.mit.edu	37	5	35065883	35065883	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:35065883C>T	uc003jjm.2	-	10	1707	c.1177G>A	c.(1177-1179)GAC>AAC	p.D393N	PRLR_uc003jjg.1_Intron|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Missense_Mutation_p.D292N	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	393	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	CACTGGGGGTCCCAGGTGTGG	0.507													88	176					0	0	0.003610	0	0
IL7R	3575	broad.mit.edu	37	5	35871203	35871203	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:35871203G>A	uc003jjs.2	+	4	514	c.425G>A	c.(424-426)GGA>GAA	p.G142E	IL7R_uc011coo.1_Missense_Mutation_p.G142E|IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	142	Extracellular (Potential).|Fibronectin type-III.				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			TATCGGGAAGGAGCCAATGAC	0.383													28	80					0	0	0.002836	0	0
SLC1A3	6507	broad.mit.edu	37	5	36629589	36629589	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:36629589G>A	uc003jkj.3	+	3	695	c.219G>A	c.(217-219)ATG>ATA	p.M73I	SLC1A3_uc011cox.1_Intron|SLC1A3_uc010iuy.2_Missense_Mutation_p.M73I	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	73					D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	CATACAGAATGAGCTACCGGG	0.388													27	109					0	0	0.004656	0	0
C7	730	broad.mit.edu	37	5	40958182	40958182	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:40958182G>A	uc003jmh.2	+	11	1422	c.1308G>A	c.(1306-1308)GTG>GTA	p.V436V	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	436	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				GTGCCTCTGTGAAAAAACTAT	0.408													26	19					0	0	0.007291	0	0
C6	729	broad.mit.edu	37	5	41161962	41161962	+	Splice_Site	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:41161962C>T	uc003jmk.2	-	10	1502	c.1292_splice	c.e10-1	p.G431_splice	C6_uc003jml.1_Splice_Site_p.G431_splice	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor						complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				ATAAATGAACCTGCAAGGTGT	0.393													59	35					0	0	0.003610	0	0
C6	729	broad.mit.edu	37	5	41176686	41176686	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:41176686C>G	uc003jmk.2	-	8	1269	c.1059G>C	c.(1057-1059)TTG>TTC	p.L353F	C6_uc003jml.1_Missense_Mutation_p.L353F	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	353	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TTCGGCTGTACAAAGCAGAGT	0.423													22	158					0	0	0.002096	0	0
C5orf28	64417	broad.mit.edu	37	5	43446415	43446415	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:43446415G>A	uc003jny.2	-	3	700	c.557C>T	c.(556-558)TCA>TTA	p.S186L	C5orf28_uc003jnv.3_Missense_Mutation_p.S186L|C5orf28_uc003jnx.2_Missense_Mutation_p.S186L	NM_022483	NP_071928	Q0VDI3	CE028_HUMAN	hypothetical protein LOC64417	186	Helical; (Potential).					integral to membrane					0	Lung NSC(6;2.07e-05)					AGGTAAAGATGATGTGATTAT	0.388													104	49					0	0	0.003610	0	0
PARP8	79668	broad.mit.edu	37	5	50055551	50055551	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:50055551C>T	uc003jon.3	+	5	441	c.259C>T	c.(259-261)CAT>TAT	p.H87Y	PARP8_uc011cpz.1_Intron|PARP8_uc003joo.2_Missense_Mutation_p.H87Y|PARP8_uc003jop.2_Missense_Mutation_p.H87Y	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	87						intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				AGTAATTTTTCATAGAATAGC	0.254													31	130					0	0	0.006230	0	0
PARP8	79668	broad.mit.edu	37	5	50123853	50123853	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:50123853G>A	uc003jon.3	+	21	2235	c.2053G>A	c.(2053-2055)GCT>ACT	p.A685T	PARP8_uc011cpz.1_Missense_Mutation_p.A577T|PARP8_uc003joo.2_Missense_Mutation_p.A685T|PARP8_uc003jop.2_Missense_Mutation_p.A643T	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	685	PARP catalytic.					intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				CAATTTTAGAGCTGCTAAAAA	0.398													76	59					0	0	0.003610	0	0
PARP8	79668	broad.mit.edu	37	5	50137824	50137824	+	Silent	SNP	T	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:50137824T>C	uc003jon.3	+	27	2669	c.2487T>C	c.(2485-2487)GAT>GAC	p.D829D	PARP8_uc011cpz.1_Silent_p.D721D|PARP8_uc003joo.2_Silent_p.D829D|PARP8_uc003jop.2_Silent_p.D787D	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	829	PARP catalytic.					intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				AAGTGGGAGATGCAAATATTA	0.333													4	138					0	0	0.001984	0	0
PARP8	79668	broad.mit.edu	37	5	50137844	50137844	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:50137844A>G	uc003jon.3	+	27	2689	c.2507A>G	c.(2506-2508)GAA>GGA	p.E836G	PARP8_uc011cpz.1_Missense_Mutation_p.E728G|PARP8_uc003joo.2_Missense_Mutation_p.E836G|PARP8_uc003jop.2_Missense_Mutation_p.E794G	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	836	PARP catalytic.					intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				AATACACAAGAAGGAGGCATT	0.353													96	55					0	0	0.003610	0	0
MOCS2	4338	broad.mit.edu	37	5	52402951	52402951	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:52402951C>A	uc011cqf.1	-	3	280	c.241G>T	c.(241-243)GTT>TTT	p.V81F	MOCS2_uc003joz.2_Silent_p.P18P|uc003jpb.1_5'Flank	NM_176806	NP_789776	O96033	MOC2A_HUMAN	molybdopterin synthase small subunit MOCS2A	81					Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol|molybdopterin synthase complex	nucleotide binding				0		Lung NSC(810;3.08e-05)|Breast(144;0.0848)				GGGGGGATAACGGCAATTTCG	0.433													105	82					1.8369e-69	1.89274e-69	0.003610	1	0
ZNF366	167465	broad.mit.edu	37	5	71756888	71756888	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:71756888C>A	uc003kce.1	-	2	622	c.436G>T	c.(436-438)GGG>TGG	p.G146W		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	146					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		GGCTTGCCCCCAAAGTGTTCC	0.622													203	115					2.77996e-98	2.86882e-98	0.003610	1	0
IQGAP2	10788	broad.mit.edu	37	5	75757427	75757427	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:75757427G>A	uc003kek.2	+	2	301	c.79G>A	c.(79-81)GAG>AAG	p.E27K		NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	27					small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		CTCTGCAGAGGAGATGGATGA	0.418													30	193					0	0	0.004878	0	0
ERAP1	51752	broad.mit.edu	37	5	96133005	96133005	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:96133005G>A	uc003kmm.2	-	4	1018	c.671C>T	c.(670-672)TCT>TTT	p.S224F	ERAP1_uc003kml.2_Missense_Mutation_p.S224F|ERAP1_uc010jbm.1_Missense_Mutation_p.S36F|ERAP1_uc003kmn.2_Missense_Mutation_p.S224F	NM_001040458	NP_001035548	Q9NZ08	ERAP1_HUMAN	type 1 tumor necrosis factor receptor shedding	224	Lumenal (Potential).				angiogenesis|antigen processing and presentation of endogenous peptide antigen via MHC class I|fat cell differentiation|membrane protein ectodomain proteolysis|regulation of blood pressure|regulation of innate immune response|response to bacterium	cytosol|endoplasmic reticulum lumen|endoplasmic reticulum membrane|extracellular region|integral to membrane	aminopeptidase activity|interleukin-1, Type II receptor binding|interleukin-6 receptor binding|metalloexopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)	2		all_cancers(142;1.75e-06)|all_epithelial(76;3.08e-09)|all_lung(232;0.000435)|Lung NSC(167;0.000601)|Ovarian(225;0.024)|Colorectal(57;0.0432)|Breast(839;0.244)		all cancers(79;7.26e-15)|COAD - Colon adenocarcinoma(37;0.071)		AACAGTCACAGATTTCACCTA	0.333													76	41					0	0	0.003610	0	0
RIOK2	55781	broad.mit.edu	37	5	96503652	96503652	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:96503652T>A	uc003kmz.2	-	8	1026	c.916A>T	c.(916-918)ACA>TCA	p.T306S	RIOK2_uc003kna.3_Missense_Mutation_p.T306S	NM_018343	NP_060813	Q9BVS4	RIOK2_HUMAN	RIO kinase 2 isoform 1	306	Protein kinase.						ATP binding|protein serine/threonine kinase activity			kidney(1)	1		all_cancers(142;0.000125)|all_epithelial(76;8.48e-07)|all_lung(232;0.0131)|Lung NSC(167;0.0161)|Colorectal(57;0.0676)|Ovarian(225;0.105)		COAD - Colon adenocarcinoma(37;0.0657)		ATTTCCTTTGTGTAGCCACTG	0.388													75	46					0	0	0.003610	0	0
MEGF10	84466	broad.mit.edu	37	5	126667027	126667027	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:126667027G>A	uc003kuh.3	+	3	389	c.27G>A	c.(25-27)CTG>CTA	p.L9L	MEGF10_uc010jdc.1_Silent_p.L9L|MEGF10_uc010jdd.1_Silent_p.L9L|MEGF10_uc003kui.3_Silent_p.L9L	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	9	Necessary for interaction with AP2M1, self-assembly and formation of the irregular, mosaic-like adhesion pattern.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		ACTCATGCCTGAGCTTTATTT	0.363													47	162					0	0	0.003610	0	0
ADAMTS19	171019	broad.mit.edu	37	5	128887561	128887561	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:128887561G>A	uc003kvb.1	+	7	1315	c.1315G>A	c.(1315-1317)GAT>AAT	p.D439N		NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	439	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		TTCTAGGAAAGATTTCTGTGT	0.289													6	27					0	0	0.003080	0	0
SLC22A4	6583	broad.mit.edu	37	5	131671623	131671623	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:131671623C>T	uc003kwq.2	+	8	1539	c.1374C>T	c.(1372-1374)AAC>AAT	p.N458N	uc003kwr.3_Intron	NM_003059	NP_003050	Q9H015	S22A4_HUMAN	solute carrier family 22 member 4	458	Cytoplasmic (Potential).				body fluid secretion|sodium ion transport	apical plasma membrane|integral to plasma membrane|mitochondrion	ATP binding|carnitine transporter activity|cation:cation antiporter activity|PDZ domain binding|secondary active organic cation transmembrane transporter activity|symporter activity				0		all_cancers(142;0.0752)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Carnitine(DB00583)	TGGTCAGGAACATGGCGGTGG	0.527													23	363					0	0	0.003330	0	0
IRF1	3659	broad.mit.edu	37	5	131823654	131823654	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:131823654C>T	uc003kxa.2	-	3	385	c.151G>A	c.(151-153)GAT>AAT	p.D51N	IRF1_uc003kxd.2_Intron|IRF1_uc003kxb.2_Missense_Mutation_p.D51N|IRF1_uc010jdt.1_Missense_Mutation_p.D51N	NM_002198	NP_002189	P10914	IRF1_HUMAN	interferon regulatory factor 1	51	IRF tryptophan pentad repeat.				blood coagulation|cellular response to mechanical stimulus|interferon-gamma-mediated signaling pathway|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	nucleoplasm					0		all_cancers(142;0.026)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	LUAD - Lung adenocarcinoma(142;0.247)		AAACAGGCATCCTTGTTGATG	0.532													96	46					0	0	0.003610	0	0
TRPC7	57113	broad.mit.edu	37	5	135561737	135561737	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:135561737C>T	uc003lbn.1	-	8	2247	c.2244G>A	c.(2242-2244)CTG>CTA	p.L748L	TRPC7_uc010jef.1_Silent_p.L685L|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Silent_p.L679L|TRPC7_uc010jei.1_Silent_p.L624L|TRPC7_uc010jej.1_Silent_p.L300L	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	749	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			ATTTGGAATTCAGCATGCCCA	0.433													12	12					0	0	0.002450	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188444	140188444	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:140188444G>A	uc003lhi.2	+	1	1773	c.1672G>A	c.(1672-1674)GAA>AAA	p.E558K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.E558K|PCDHA4_uc011daa.1_Missense_Mutation_p.E558K	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	558	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTGCTGGACGAAAACGACAA	0.667													75	29					0	0	0.003610	0	0
PCDHA13	56136	broad.mit.edu	37	5	140263294	140263294	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:140263294G>T	uc003lif.2	+	1	1441	c.1441G>T	c.(1441-1443)GAC>TAC	p.D481Y	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Missense_Mutation_p.D481Y|PCDHA13_uc003lid.2_Missense_Mutation_p.D481Y	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	481	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTCTGCTCAGGACGCGGACGC	0.662													38	153					4.44712e-29	4.57534e-29	0.003610	1	0
PCDHA13	56136	broad.mit.edu	37	5	140263666	140263666	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:140263666G>C	uc003lif.2	+	1	1813	c.1813G>C	c.(1813-1815)GCG>CCG	p.A605P	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Missense_Mutation_p.A605P|PCDHA13_uc003lid.2_Missense_Mutation_p.A605P	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	605	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGCTACAATGCGTGGCTTTC	0.687													18	251					0	0	0.001882	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140346950	140346950	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:140346950T>G	uc003lii.2	+	1	839	c.599T>G	c.(598-600)CTG>CGG	p.L200R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Missense_Mutation_p.L200R	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	200	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTTAAGCCCCTGCAGGAGAAC	0.612													14	3					0	0	0.004007	0	0
PCDHB2	56133	broad.mit.edu	37	5	140474740	140474740	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:140474740G>A	uc003lil.2	+	1	504	c.366G>A	c.(364-366)GAG>GAA	p.E122E	PCDHB2_uc003lim.1_Intron	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	122	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCAGGCGGAGCTACGGATTA	0.448													57	9					0	0	0.003610	0	0
PCDHGB2	56103	broad.mit.edu	37	5	140741165	140741165	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:140741165C>T	uc003ljs.1	+	1	1463	c.1463C>T	c.(1462-1464)TCC>TTC	p.S488F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGA5_uc003lju.1_5'Flank|PCDHGB2_uc011dar.1_Missense_Mutation_p.S488F|PCDHGA5_uc011das.1_5'Flank	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	488	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCCAAGTTTCCTACTCCATC	0.592													51	7					0	0	0.003610	0	0
SLIT3	6586	broad.mit.edu	37	5	168620526	168620526	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:168620526G>A	uc003mab.2	-	4	790	c.370C>T	c.(370-372)CTT>TTT	p.L124F	SLIT3_uc010jjg.2_Missense_Mutation_p.L124F|SLIT3_uc010jji.2_Missense_Mutation_p.L124F	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	124	LRR 3.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AATTCTGGAAGGACTTGCAGC	0.473													71	17					0	0	0.003610	0	0
DOK3	79930	broad.mit.edu	37	5	176931361	176931361	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:176931361C>T	uc003mhk.2	-	6	1119	c.1114G>A	c.(1114-1116)GAG>AAG	p.E372K	DOK3_uc003mhh.3_Intron|DOK3_uc003mhi.3_Intron|DOK3_uc003mhj.3_Intron|DOK3_uc003mhl.2_Missense_Mutation_p.E316K	NM_024872	NP_079148	Q7L591	DOK3_HUMAN	docking protein 3 isoform 1	372	Pro-rich.					cytoplasm|plasma membrane	insulin receptor binding				0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.191)			TCGTTGGGCTCCGGGCCTAGC	0.642													18	10					0	0	0.007413	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178541256	178541256	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:178541256G>T	uc003mjw.2	-	22	3248	c.3248C>A	c.(3247-3249)CCA>CAA	p.P1083Q	uc003mjv.3_5'Flank	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1083	PLAC.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		GTTGTAGCCTGGGATGGAGCA	0.502													6	80					2.7689e-08	2.80615e-08	0.001984	1	0
F13A1	2162	broad.mit.edu	37	6	6222267	6222267	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:6222267A>C	uc003mwv.2	-	8	1234	c.1111T>G	c.(1111-1113)TGG>GGG	p.W371G	F13A1_uc011dib.1_Missense_Mutation_p.W308G	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	371					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	CAAACTCACCACACTGAATCC	0.378													31	57					0	0	0.005524	0	0
MAK	4117	broad.mit.edu	37	6	10804012	10804012	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:10804012C>T	uc003mzl.2	-	6	833	c.604G>A	c.(604-606)GGG>AGG	p.G202R	SYCP2L_uc011dim.1_Intron|TMEM14B_uc010jos.1_Intron|MAK_uc010jot.2_RNA|MAK_uc010jou.2_RNA|MAK_uc003mzm.2_Missense_Mutation_p.G202R|MAK_uc010jov.1_RNA	NM_005906	NP_005897	P20794	MAK_HUMAN	male germ cell-associated kinase	202	Protein kinase.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|cyclin-dependent protein kinase activity			breast(2)|skin(1)	3	Breast(50;0.107)|Ovarian(93;0.107)	all_hematologic(90;0.117)				TCACTTGTCCCTGGGAAAAGT	0.378													67	60					0	0	0.003610	0	0
GPX6	257202	broad.mit.edu	37	6	28473512	28473512	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:28473512C>T	uc011dlj.1	-	5	477	c.427G>A	c.(427-429)GAA>AAA	p.E143K	GPX6_uc010jrg.1_Intron	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	143					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	TGTTCTTTTTCTCCATTCACA	0.463													16	75					0	0	0.008871	0	0
OR2J3	442186	broad.mit.edu	37	6	29079811	29079811	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:29079811C>T	uc011dll.1	+	1	144	c.144C>T	c.(142-144)ATC>ATT	p.I48I		NM_001005216	NP_001005216	O76001	OR2J3_HUMAN	olfactory receptor, family 2, subfamily J,	48	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACCTGTTCATCATCATCCTGT	0.413													143	176					0	0	0.003610	0	0
OR11A1	26531	broad.mit.edu	37	6	29395399	29395399	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:29395399C>T	uc003nmg.2	-	1	111	c.20G>A	c.(19-21)GGA>GAA	p.G7E		NM_013937	NP_039225	Q9GZK7	O11A1_HUMAN	olfactory receptor, family 11, subfamily A,	7	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						AGTTTCGTTTCCTGTGGAGAC	0.398													38	43					0	0	0.003610	0	0
MDC1	9656	broad.mit.edu	37	6	30672602	30672602	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:30672602G>A	uc003nrg.3	-	10	4798	c.4358C>T	c.(4357-4359)CCT>CTT	p.P1453L	MDC1_uc003nrf.3_Intron|MDC1_uc011dmp.1_Missense_Mutation_p.P1060L	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	1453	Pro-rich.|Interaction with the PRKDC complex.				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						CTGGAGCTCAGGGGCTGTGGG	0.567								Other_conserved_DNA_damage_response_genes					152	166					0	0	0.003610	0	0
MUC21	394263	broad.mit.edu	37	6	30954876	30954876	+	Silent	SNP	C	T	T	rs41288669		TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:30954876C>T	uc003nsh.2	+	2	1175	c.924C>T	c.(922-924)ACC>ACT	p.T308T	MUC21_uc003nsi.1_RNA	NM_001010909	NP_001010909	Q5SSG8	MUC21_HUMAN	mucin 21 precursor	308	Ser-rich.|28 X 15 AA approximate tandem repeats.|19.|Extracellular (Potential).			T -> V (in Ref. 3; AAQ88781 and 4; CAQ08321).		integral to membrane|plasma membrane				ovary(1)|skin(1)	2						CCAGTACGACCTCCAGTGGGG	0.607													155	371					0	0	0.003610	0	0
MUC21	394263	broad.mit.edu	37	6	30955141	30955141	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:30955141A>C	uc003nsh.2	+	2	1440	c.1189A>C	c.(1189-1191)ACG>CCG	p.T397P	MUC21_uc003nsi.1_RNA	NM_001010909	NP_001010909	Q5SSG8	MUC21_HUMAN	mucin 21 precursor	397	Ser-rich.|25.|28 X 15 AA approximate tandem repeats.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|skin(1)	2						TGAGTCCAGCACGACCTCCAG	0.627													118	438					0	0	0.003610	0	0
DAAM2	23500	broad.mit.edu	37	6	39855359	39855359	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:39855359T>C	uc003oow.2	+	16	2207	c.2051T>C	c.(2050-2052)CTT>CCT	p.L684P	DAAM2_uc003oox.2_Missense_Mutation_p.L684P|uc003ooz.1_5'Flank	NM_015345	NP_056160	Q86T65	DAAM2_HUMAN	dishevelled associated activator of	684	FH2.				actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)|skin(1)	3	Ovarian(28;0.0355)|Colorectal(47;0.196)					TGCATCATCCTTCTTTCCAAG	0.562													16	30					0	0	0.008871	0	0
TREML4	285852	broad.mit.edu	37	6	41204224	41204224	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:41204224G>A	uc003oqc.2	+	5	611	c.507G>A	c.(505-507)AGG>AGA	p.R169R	TREML4_uc003oqd.2_RNA	NM_198153	NP_937796	Q6UXN2	TRML4_HUMAN	triggering receptor expressed on myeloid	169						extracellular region				breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					TTCCCTGCAGGAAATCAAGAG	0.597													9	45					0	0	0.006214	0	0
PGC	5225	broad.mit.edu	37	6	41708329	41708329	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:41708329C>T	uc003ora.1	-	6	716	c.667G>A	c.(667-669)GGA>AGA	p.G223R		NM_002630	NP_002621	P20142	PEPC_HUMAN	progastricsin (pepsinogen C) precursor	223					digestion|proteolysis	extracellular space	aspartic-type endopeptidase activity				0	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;0.000132)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00507)			ACAACCGCTCCCCCGCTGGAG	0.587													7	217					0	0	0.004482	0	0
C6orf138	442213	broad.mit.edu	37	6	47846804	47846804	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:47846804G>A	uc011dwm.1	-	3	1810	c.1725C>T	c.(1723-1725)ATC>ATT	p.I575I	C6orf138_uc011dwn.1_Silent_p.I339I	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	592						integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						TGGAGAAGATGATATCATTTC	0.418													7	41					0	0	0.001984	0	0
HCRTR2	3062	broad.mit.edu	37	6	55147037	55147037	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:55147037G>A	uc003pcl.2	+	7	1435	c.1120G>A	c.(1120-1122)GAA>AAA	p.E374K	HCRTR2_uc010jzv.2_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	374	Cytoplasmic (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			ATTTCGAGAGGAATTTAAAGC	0.448													3	45					0	0	0.004672	0	0
COL21A1	81578	broad.mit.edu	37	6	55933851	55933851	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:55933851C>T	uc003pcs.2	-	22	2316	c.2084G>A	c.(2083-2085)GGA>GAA	p.G695E	COL21A1_uc010jzz.2_Missense_Mutation_p.G80E|COL21A1_uc011dxg.1_Missense_Mutation_p.G80E|COL21A1_uc011dxh.1_Missense_Mutation_p.G80E|COL21A1_uc003pcr.2_Missense_Mutation_p.E53K	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	695	Collagen-like 4.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			TACCTTTTTTCCTTGAATCCC	0.403													3	14					0	0	0.009096	0	0
ZNF451	26036	broad.mit.edu	37	6	56997930	56997930	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:56997930C>T	uc003pdm.1	+	6	739	c.515C>T	c.(514-516)CCT>CTT	p.P172L	ZNF451_uc003pdl.2_Missense_Mutation_p.P172L|ZNF451_uc003pdn.1_Missense_Mutation_p.P172L|uc003pdq.1_Intron|ZNF451_uc003pdk.1_Missense_Mutation_p.P172L	NM_001031623	NP_001026794	Q9Y4E5	ZN451_HUMAN	zinc finger protein 451 isoform 1	172	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung NSC(77;0.145)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			ATTTTATGTCCTATAATGCAC	0.403													52	71					0	0	0.003610	0	0
BAI3	577	broad.mit.edu	37	6	69728368	69728368	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:69728368C>T	uc003pev.3	+	13	2532	c.2084C>T	c.(2083-2085)TCA>TTA	p.S695L	BAI3_uc010kak.2_Missense_Mutation_p.S695L	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	695	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				TTTCAGAATTCATACTTAATG	0.328													26	61					0	0	0.002445	0	0
RIMS1	22999	broad.mit.edu	37	6	73102459	73102459	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:73102459G>A	uc003pga.2	+	31	4642	c.4565G>A	c.(4564-4566)GGA>GAA	p.G1522E	RIMS1_uc011dyb.1_Missense_Mutation_p.G919E|RIMS1_uc003pgc.2_Missense_Mutation_p.G971E|RIMS1_uc010kaq.2_Missense_Mutation_p.G842E|RIMS1_uc011dyc.1_Missense_Mutation_p.G647E|RIMS1_uc010kar.2_Missense_Mutation_p.G590E|RIMS1_uc011dyd.1_Missense_Mutation_p.G656E|RIMS1_uc003pgf.2_Missense_Mutation_p.G522E|RIMS1_uc003pgg.2_Missense_Mutation_p.G418E|RIMS1_uc003pgi.2_Missense_Mutation_p.G338E|RIMS1_uc003pgh.2_Missense_Mutation_p.G389E|RIMS1_uc003pgd.2_Missense_Mutation_p.G588E|RIMS1_uc003pge.2_Missense_Mutation_p.G562E|RIMS1_uc011dye.1_Missense_Mutation_p.G328E|RIMS1_uc011dyf.1_Missense_Mutation_p.G146E|RIMS1_uc011dyg.1_Missense_Mutation_p.G49E	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	1522					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				TTTCTTGATGGATTGGGACCA	0.408													42	57					0	0	0.003610	0	0
FILIP1	27145	broad.mit.edu	37	6	76022822	76022822	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:76022822G>A	uc003pia.2	-	5	3099	c.2726C>T	c.(2725-2727)CCC>CTC	p.P909L	FILIP1_uc003phy.1_Missense_Mutation_p.P909L|FILIP1_uc003phz.2_Missense_Mutation_p.P810L|FILIP1_uc010kbe.2_Missense_Mutation_p.P912L|FILIP1_uc003pib.1_Missense_Mutation_p.P661L	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	909										skin(3)|ovary(1)	4						AATATGCAGGGGCTGGCCCTG	0.522													28	80					0	0	0.002445	0	0
ELOVL4	6785	broad.mit.edu	37	6	80631503	80631503	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:80631503G>A	uc003pja.3	-	4	699	c.380C>T	c.(379-381)GCT>GTT	p.A127V	ELOVL4_uc011dyt.1_RNA	NM_022726	NP_073563	Q9GZR5	ELOV4_HUMAN	elongation of very long chain fatty acids-like	127					fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	integral to endoplasmic reticulum membrane	G-protein coupled photoreceptor activity|protein binding|transferase activity, transferring acyl groups other than amino-acyl groups			ovary(1)|skin(1)	2		all_cancers(76;1.83e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.011)		BRCA - Breast invasive adenocarcinoma(397;0.0168)	Alpha-Linolenic Acid(DB00132)	CCACCACAGAGCAGCAGCTAT	0.338													20	23					0	0	0.004656	0	0
SNAP91	9892	broad.mit.edu	37	6	84269879	84269879	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:84269879A>G	uc011dze.1	-	27	2892	c.2575T>C	c.(2575-2577)TTT>CTT	p.F859L	SNAP91_uc011dzd.1_Missense_Mutation_p.F357L|SNAP91_uc003pkb.2_Missense_Mutation_p.F768L|SNAP91_uc003pkc.2_Missense_Mutation_p.F829L|SNAP91_uc003pkd.2_Missense_Mutation_p.F552L|SNAP91_uc003pka.2_Missense_Mutation_p.F857L	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	859	Pro-rich.				clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		GGCTGTGCAAACATGACCGGC	0.537													23	65					0	0	0.002096	0	0
SNAP91	9892	broad.mit.edu	37	6	84292059	84292059	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:84292059G>A	uc011dze.1	-	22	2348	c.2031C>T	c.(2029-2031)TTC>TTT	p.F677F	SNAP91_uc011dzd.1_Silent_p.F180F|SNAP91_uc003pkb.2_Silent_p.F586F|SNAP91_uc003pkc.2_Silent_p.F647F|SNAP91_uc003pkd.2_Silent_p.F370F|SNAP91_uc003pka.2_Silent_p.F675F	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	677					clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		AAGGCGCCATGAAAGAACCCC	0.418													4	10					0	0	0.001168	0	0
SNAP91	9892	broad.mit.edu	37	6	84371229	84371229	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:84371229C>T	uc011dze.1	-	5	761	c.444G>A	c.(442-444)GTG>GTA	p.V148V	SNAP91_uc003pkb.2_Silent_p.V113V|SNAP91_uc003pkc.2_Silent_p.V148V|SNAP91_uc003pkd.2_Silent_p.V148V|SNAP91_uc003pka.2_Silent_p.V148V|SNAP91_uc011dzf.1_Silent_p.V29V	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	148					clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		ACCCTTTCTTCACCCTGGCAA	0.338													10	18					0	0	0.000978	0	0
MRAP2	112609	broad.mit.edu	37	6	84799080	84799080	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:84799080C>T	uc003pkg.3	+	4	688	c.498C>T	c.(496-498)ATC>ATT	p.I166I	MRAP2_uc010kbo.2_Silent_p.I80I	NM_138409	NP_612418	Q96G30	MRAP2_HUMAN	melanocortin 2 receptor accessory protein 2	166					positive regulation of cAMP biosynthetic process|protein localization at cell surface	endoplasmic reticulum|plasma membrane	corticotropin hormone receptor binding|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding|type 5 melanocortin receptor binding			skin(2)	2						AGTTTGACATCCCCAACTTTG	0.502													39	60					0	0	0.003610	0	0
TBX18	9096	broad.mit.edu	37	6	85447026	85447026	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:85447026G>A	uc003pkl.1	-	8	1201	c.1201C>T	c.(1201-1203)CAT>TAT	p.H401Y	TBX18_uc010kbq.1_Intron	NM_001080508	NP_001073977	O95935	TBX18_HUMAN	T-box 18	401					multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|pancreas(2)|lung(1)	5		all_cancers(76;0.000283)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0858)		BRCA - Breast invasive adenocarcinoma(108;0.0267)		GGCCCCAGATGGAAGGCAGGA	0.577													38	40					0	0	0.006230	0	0
GOPC	57120	broad.mit.edu	37	6	117896389	117896389	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:117896389A>T	uc003pxu.2	-	4	831	c.601T>A	c.(601-603)TAT>AAT	p.Y201N	GOPC_uc003pxq.1_5'Flank|GOPC_uc003pxv.2_Missense_Mutation_p.Y193N	NM_020399	NP_065132	Q9HD26	GOPC_HUMAN	golgi associated PDZ and coiled-coil motif	201					apical protein localization|cytoplasmic sequestering of CFTR protein|ER to Golgi vesicle-mediated transport|Golgi to plasma membrane transport|protein homooligomerization|protein transport	cell junction|dendrite|Golgi membrane|postsynaptic density|postsynaptic membrane|trans-Golgi network transport vesicle	cystic fibrosis transmembrane conductance regulator binding			ovary(1)	1		all_cancers(87;0.00844)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0363)|OV - Ovarian serous cystadenocarcinoma(136;0.0821)|all cancers(137;0.0976)		CTCGCCCCATATACTTCAGCC	0.388			O	ROS1	glioblastoma								20	65					0	0	0.005443	0	0
CLVS2	134829	broad.mit.edu	37	6	123376971	123376971	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:123376971C>T	uc003pzi.1	+	5	1565	c.696C>T	c.(694-696)AAC>AAT	p.N232N		NM_001010852	NP_001010852	Q5SYC1	CLVS2_HUMAN	retinaldehyde binding protein 1-like 2	232	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						ATGGTAACAACCTGAACAGTC	0.453													25	38					0	0	0.007291	0	0
C6orf58	352999	broad.mit.edu	37	6	127898371	127898371	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:127898371C>T	uc003qbh.2	+	1	53	c.41C>T	c.(40-42)TCC>TTC	p.S14F		NM_001010905	NP_001010905	Q6P5S2	CF058_HUMAN	hypothetical protein LOC352999 precursor	14						extracellular region					0				GBM - Glioblastoma multiforme(226;0.0405)|all cancers(137;0.156)		CTAGTTGGTTCCTTTTCTGCT	0.512													34	33					0	0	0.007835	0	0
SAMD3	154075	broad.mit.edu	37	6	130535633	130535633	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:130535633C>T	uc003qbv.2	-	5	444	c.118G>A	c.(118-120)GAT>AAT	p.D40N	SAMD3_uc003qbx.2_Missense_Mutation_p.D40N|SAMD3_uc003qbw.2_Missense_Mutation_p.D40N|SAMD3_uc010kfg.1_Missense_Mutation_p.D40N|SAMD3_uc003qby.2_Missense_Mutation_p.D40N|SAMD3_uc003qbz.1_5'UTR	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform	40	SAM.									ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		ACCATCCGATCATTAAGTGCA	0.413													17	40					0	0	0.007413	0	0
SLC2A12	154091	broad.mit.edu	37	6	134349844	134349844	+	Silent	SNP	G	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:134349844G>T	uc003qem.1	-	2	1290	c.1119C>A	c.(1117-1119)ACC>ACA	p.T373T		NM_145176	NP_660159	Q8TD20	GTR12_HUMAN	solute carrier family 2 (facilitated glucose	373	Extracellular (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity			ovary(1)	1	Breast(56;0.214)|Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0101)|GBM - Glioblastoma multiforme(68;0.0123)		TGCAGATATGGGTGAAGTTCA	0.468													14	37					1.05317e-09	1.07054e-09	0.002450	1	0
BCLAF1	9774	broad.mit.edu	37	6	136599700	136599700	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:136599700G>A	uc003qgx.1	-	4	572	c.319C>T	c.(319-321)CGA>TGA	p.R107*	BCLAF1_uc003qgw.1_Nonsense_Mutation_p.R107*|BCLAF1_uc003qgy.1_Nonsense_Mutation_p.R105*|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Nonsense_Mutation_p.R105*	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	107					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		GAACGACCTCGTCTAGGACTC	0.478													38	125					0	0	0.003214	0	0
C6orf97	80129	broad.mit.edu	37	6	151894590	151894590	+	Silent	SNP	T	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:151894590T>A	uc003qol.2	+	6	1145	c.1056T>A	c.(1054-1056)ATT>ATA	p.I352I		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	352											0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		TGGAGAAGATTCGAGAAATGG	0.493													29	39					0	0	0.006230	0	0
C6orf97	80129	broad.mit.edu	37	6	151936725	151936725	+	Nonsense_Mutation	SNP	G	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:151936725G>T	uc003qol.2	+	10	1947	c.1858G>T	c.(1858-1860)GAA>TAA	p.E620*		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	620	Potential.										0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		GGAGAATAAAGAAAGGGCCAG	0.413													31	58					6.50621e-10	6.6334e-10	0.002836	1	0
SYNE1	23345	broad.mit.edu	37	6	152737953	152737953	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:152737953G>A	uc010kiw.2	-	41	6221	c.5619C>T	c.(5617-5619)TTC>TTT	p.F1873F	SYNE1_uc003qot.3_Silent_p.F1880F|SYNE1_uc003qou.3_Silent_p.F1873F|SYNE1_uc010kjb.1_Silent_p.F1856F	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1873	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GGCTCTGGAGGAATTCTGCCA	0.542										HNSCC(10;0.0054)			20	44					0	0	0.008871	0	0
SYNE1	23345	broad.mit.edu	37	6	152786573	152786573	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:152786573C>T	uc010kiw.2	-	18	2354	c.1752G>A	c.(1750-1752)ATG>ATA	p.M584I	SYNE1_uc003qot.3_Missense_Mutation_p.M591I|SYNE1_uc003qou.3_Missense_Mutation_p.M584I|SYNE1_uc010kjb.1_Missense_Mutation_p.M567I|SYNE1_uc003qpa.1_Missense_Mutation_p.M584I|SYNE1_uc003qow.2_5'Flank|SYNE1_uc003qox.1_Missense_Mutation_p.M100I|SYNE1_uc003qoz.2_Missense_Mutation_p.M16I|SYNE1_uc003qoy.2_Missense_Mutation_p.M151I	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	584	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TCATGAATTTCATCACATTCT	0.393										HNSCC(10;0.0054)			11	18					0	0	0.000978	0	0
TIAM2	26230	broad.mit.edu	37	6	155458688	155458688	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr6:155458688A>T	uc003qqb.2	+	7	2845	c.1572A>T	c.(1570-1572)GAA>GAT	p.E524D	TIAM2_uc003qqe.2_Missense_Mutation_p.E524D|TIAM2_uc010kjj.2_Missense_Mutation_p.E57D	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	524	PH 1.				apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		TGCAGAAGGAAAGGAAGCTTG	0.557													12	47					0	0	0.003163	0	0
TNRC18	84629	broad.mit.edu	37	7	5427387	5427388	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:5427387_5427388GG>AA	uc003soi.3	-	5	2416_2417	c.2067_2068CC>TT	c.(2065-2070)GCCCGG>GCTTGG	p.R690W	TNRC18_uc010ksx.1_Missense_Mutation_p.R616W	NM_001080495	NP_001073964	O15417	TNC18_HUMAN	trinucleotide repeat containing 18	690							DNA binding				0		Ovarian(82;0.142)		UCEC - Uterine corpus endometrioid carcinoma (126;0.195)|OV - Ovarian serous cystadenocarcinoma(56;5.32e-15)		TCCTTCTGCCGGGCCACAGCCA	0.668													32	70					0	0	0.004672	0	0
RAC1	5879	broad.mit.edu	37	7	6426892	6426892	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:6426892C>T	uc003spx.2	+	2	326	c.85C>T	c.(85-87)CCT>TCT	p.P29S	RAC1_uc003spw.2_Missense_Mutation_p.P29S	NM_006908	NP_008839	P63000	RAC1_HUMAN	ras-related C3 botulinum toxin substrate 1	29					actin filament polymerization|apoptosis|axon guidance|cell motility|cell-matrix adhesion|induction of apoptosis by extracellular signals|inflammatory response|lamellipodium assembly|localization within membrane|negative regulation of interleukin-23 production|negative regulation of receptor-mediated endocytosis|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of lamellipodium assembly|positive regulation of Rho protein signal transduction|regulation of cell migration|regulation of defense response to virus by virus|regulation of hydrogen peroxide metabolic process|regulation of respiratory burst|ruffle organization|small GTPase mediated signal transduction|T cell costimulation|viral reproduction	cytosol|melanosome|plasma membrane	GTP binding|GTP-dependent protein binding|GTPase activity|thioesterase binding			lung(2)	2		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.104)	Pravastatin(DB00175)|Simvastatin(DB00641)	CAATGCATTTCCTGGAGAATA	0.353													50	185					0	0	0.003610	0	0
ZDHHC4	55146	broad.mit.edu	37	7	6624874	6624875	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:6624874_6624875AC>TT	uc003sqi.2	+	8	1082_1083	c.724_725AC>TT	c.(724-726)ACG>TTG	p.T242L	ZDHHC4_uc003sql.2_Missense_Mutation_p.T242L|ZDHHC4_uc003sqh.2_Missense_Mutation_p.T242L|ZDHHC4_uc003sqj.2_Missense_Mutation_p.T242L|ZDHHC4_uc003sqk.2_Missense_Mutation_p.T242L|ZDHHC4_uc003sqm.2_Missense_Mutation_p.T242L	NM_001134388	NP_001127860	Q9NPG8	ZDHC4_HUMAN	zinc finger, DHHC-type containing 4	242						integral to membrane	acyltransferase activity|zinc ion binding			breast(1)|pancreas(1)	2		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.1)		TGTTATGGACACGGTCTTTCTT	0.406													31	49					0	0	0.004672	0	0
HDAC9	9734	broad.mit.edu	37	7	18875593	18875593	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:18875593G>A	uc003suh.2	+	20	2689	c.2648G>A	c.(2647-2649)GGA>GAA	p.G883E	HDAC9_uc003sue.2_Missense_Mutation_p.G883E|HDAC9_uc003sui.2_Missense_Mutation_p.G886E|HDAC9_uc003suj.2_Missense_Mutation_p.G842E|HDAC9_uc003suk.2_Missense_Mutation_p.G131E	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	883	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	CCTCCCATGGGAGATGTTGAG	0.443													7	6					0	0	0.006214	0	0
SP8	221833	broad.mit.edu	37	7	20824282	20824282	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:20824282T>C	uc003suy.2	-	3	1341	c.1100A>G	c.(1099-1101)TAC>TGC	p.Y367C	SP8_uc003suz.2_Missense_Mutation_p.Y385C	NM_198956	NP_945194	Q8IXZ3	SP8_HUMAN	Sp8 transcription factor isoform 2	367	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						AGTCTTGCCGTACACCTTGCC	0.697													11	51					0	0	0.003163	0	0
DNAH11	8701	broad.mit.edu	37	7	21940839	21940839	+	Silent	SNP	T	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:21940839T>G	uc003svc.2	+	83	13570	c.13539T>G	c.(13537-13539)GTT>GTG	p.V4513V	CDCA7L_uc003sve.3_3'UTR|CDCA7L_uc010kuk.2_3'UTR|CDCA7L_uc010kul.2_3'UTR|CDCA7L_uc003svf.3_3'UTR	NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	4513					microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						CAAAATGGGTTCTGGCTGGAG	0.512									Kartagener_syndrome				36	57					0	0	0.007835	0	0
CPVL	54504	broad.mit.edu	37	7	29105639	29105639	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:29105639C>T	uc003szv.2	-	10	1082	c.963G>A	c.(961-963)ACG>ACA	p.T321T	CPVL_uc003szw.2_Silent_p.T321T|CPVL_uc003szx.2_Silent_p.T321T	NM_031311	NP_112601	Q9H3G5	CPVL_HUMAN	serine carboxypeptidase vitellogenic-like	321					proteolysis		protein binding|serine-type carboxypeptidase activity			ovary(2)	2						ATGTCATTACCGTGCACCGCA	0.323													57	58					0	0	0.003610	0	0
CRHR2	1395	broad.mit.edu	37	7	30693178	30693178	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:30693178C>T	uc003tbn.2	-	12	1378	c.1134G>A	c.(1132-1134)CAG>CAA	p.Q378Q	CRHR2_uc010kvw.1_3'UTR|CRHR2_uc010kvx.1_Silent_p.Q377Q|CRHR2_uc010kvy.1_Silent_p.Q214Q|CRHR2_uc003tbo.2_Silent_p.Q364Q|CRHR2_uc003tbp.2_Silent_p.Q405Q	NM_001883	NP_001874	Q13324	CRFR2_HUMAN	corticotropin releasing hormone receptor 2	378	Cytoplasmic (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	corticotrophin-releasing factor receptor activity|protein binding			lung(2)|ovary(1)|skin(1)	4						AGTGATGGTCCTGCCAGCGGT	0.642													127	193					0	0	0.003610	0	0
INMT	11185	broad.mit.edu	37	7	30793423	30793423	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:30793423C>T	uc003tbs.1	+	2	247	c.231C>T	c.(229-231)TCC>TCT	p.S77S	FAM188B_uc010kwe.2_5'UTR|INMT_uc010kwc.1_RNA|INMT_uc010kwd.1_Silent_p.S76S	NM_006774	NP_006765	O95050	INMT_HUMAN	indolethylamine N-methyltransferase	77						cytoplasm	amine N-methyltransferase activity				0						CCTGTGATTCCTTCCAAGACA	0.567													227	355					0	0	0.003610	0	0
NPSR1	387129	broad.mit.edu	37	7	34888116	34888116	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:34888116C>T	uc003teg.1	+	8	994	c.866C>T	c.(865-867)CCA>CTA	p.P289L	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.P289L|NPSR1_uc010kwt.1_Missense_Mutation_p.P136L|NPSR1_uc010kwu.1_Missense_Mutation_p.P79L|NPSR1_uc010kwv.1_Missense_Mutation_p.P223L|NPSR1_uc003tei.1_Missense_Mutation_p.P289L|NPSR1_uc010kww.1_Missense_Mutation_p.P278L|NPSR1_uc011kar.1_Missense_Mutation_p.P223L	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	289	Helical; Name=6; (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	TGTTGGAGTCCATACTTCCTG	0.483													258	389					0	0	0.003610	0	0
TBX20	57057	broad.mit.edu	37	7	35289643	35289644	+	Missense_Mutation	DNP	AA	CG	CG			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:35289643_35289644AA>CG	uc011kas.1	-	2	310_311	c.299_300TT>CG	c.(298-300)ATT>ACG	p.I100T		NM_001077653	NP_001071121	Q9UMR3	TBX20_HUMAN	T-box transcription factor TBX20	100						nucleus	DNA binding			central_nervous_system(1)	1						GGCTGCAGGCAATTTTGGCCAT	0.579													22	97					0	0	0.004672	0	0
EEPD1	80820	broad.mit.edu	37	7	36194537	36194537	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:36194537C>T	uc003tfa.2	+	2	1244	c.604C>T	c.(604-606)CCC>TCC	p.P202S		NM_030636	NP_085139	Q7L9B9	EEPD1_HUMAN	endonuclease/exonuclease/phosphatase family	202					DNA repair		DNA binding				0						GAGGTCCAGGCCCCCATCCAC	0.637													80	103					0	0	0.003610	0	0
POU6F2	11281	broad.mit.edu	37	7	39500170	39500170	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:39500170T>G	uc003thb.1	+	9	1469	c.1427T>G	c.(1426-1428)GTG>GGG	p.V476G		NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	476	POU-specific.				central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						GCGGGTGAGGTGGATGGGGTT	0.478													21	33					0	0	0.002096	0	0
HECW1	23072	broad.mit.edu	37	7	43483963	43483963	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:43483963G>A	uc003tid.1	+	11	1797	c.1192G>A	c.(1192-1194)GAG>AAG	p.E398K	HECW1_uc011kbi.1_Missense_Mutation_p.E398K	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	398					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						GCAGCTGGGTGAGGGCAGTGT	0.597													32	54					0	0	0.006230	0	0
PGAM2	5224	broad.mit.edu	37	7	44104852	44104852	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:44104852C>T	uc003tjs.2	-	1	312	c.277G>A	c.(277-279)GGG>AGG	p.G93R		NM_000290	NP_000281	P15259	PGAM2_HUMAN	phosphoglycerate mutase 2	93					gluconeogenesis|glycolysis|striated muscle contraction	cytosol	2,3-bisphospho-D-glycerate 2-phosphohydrolase activity|bisphosphoglycerate mutase activity				0						GTGAGGCCCCCGTAATGCCGC	0.667													37	44					0	0	0.007835	0	0
AEBP1	165	broad.mit.edu	37	7	44146353	44146353	+	Silent	SNP	A	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:44146353A>G	uc003tkb.2	+	2	767	c.462A>G	c.(460-462)AAA>AAG	p.K154K		NM_001129	NP_001120	Q8IUX7	AEBP1_HUMAN	adipocyte enhancer binding protein 1 precursor	154	Pro-rich.				cell adhesion|muscle organ development|proteolysis|skeletal system development	cytoplasm|extracellular space|nucleus	DNA binding|metallocarboxypeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AGAAGCCCAAAGAGAAGCCAC	0.627													3	47					0	0	0.004672	0	0
NPC1L1	29881	broad.mit.edu	37	7	44574126	44574126	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:44574126G>A	uc003tlb.2	-	6	2142	c.2086C>T	c.(2086-2088)CTG>TTG	p.L696L	NPC1L1_uc003tlc.2_Silent_p.L696L|NPC1L1_uc011kbw.1_Silent_p.L696L|NPC1L1_uc003tld.2_Silent_p.L696L	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	696	SSD.|Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	AGGATGACCAGGGAGGAGCGG	0.597											OREG0018038	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	69	127					0	0	0.003610	0	0
LOC442308	442308	broad.mit.edu	37	7	55714207	55714207	+	RNA	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:55714207G>A	uc010kzj.2	+	1		c.896G>A				NR_003598				Homo sapiens similar to tubulin, beta 5 (LOC442308), non-coding RNA.												0						CCAAAAACCTGATGGCTGCTT	0.552													3	35					0	0	0.001168	0	0
ZNF479	90827	broad.mit.edu	37	7	57187752	57187752	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:57187752C>T	uc010kzo.2	-	5	1641	c.1370G>A	c.(1369-1371)AGA>AAA	p.R457K		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	457	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			AGTATGAATTCTCTTGTGGTC	0.433													116	210					0	0	0.003610	0	0
WBSCR17	64409	broad.mit.edu	37	7	71130429	71130429	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:71130429C>T	uc003tvy.2	+	7	1114	c.1114C>T	c.(1114-1116)CCT>TCT	p.P372S	WBSCR17_uc003tvz.2_Missense_Mutation_p.P71S	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	372	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				GGAGGTCCTTCCTTGCTCACG	0.527													112	136					0	0	0.003610	0	0
POM121	9883	broad.mit.edu	37	7	72413470	72413470	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:72413470C>T	uc003twk.2	+	11	2938	c.2938C>T	c.(2938-2940)CCG>TCG	p.P980S	POM121_uc003twj.2_Missense_Mutation_p.P715S|POM121_uc010lam.1_Missense_Mutation_p.P715S	NM_172020	NP_742017	Q96HA1	P121A_HUMAN	nuclear pore membrane protein 121	980	Pore side (Potential).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore					0		Lung NSC(55;0.163)				GGGGCAGCCACCGGGGGCCGC	0.657													27	91					0	0	0.007291	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657732	72657732	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:72657732G>A	uc003txs.1	-	13	2180	c.1252C>T	c.(1252-1254)CCC>TCC	p.P418S	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						ttcagggtgggaaagtgggcc	0													138	176					0	0	0.003610	0	0
PCLO	27445	broad.mit.edu	37	7	82586245	82586245	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:82586245C>T	uc003uhx.2	-	5	4313	c.4024G>A	c.(4024-4026)GAA>AAA	p.E1342K	PCLO_uc003uhv.2_Missense_Mutation_p.E1342K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1273					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTGTCATCTTCCTTTTCCTAA	0.413													15	21					0	0	0.006122	0	0
PCLO	27445	broad.mit.edu	37	7	82595501	82595501	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:82595501C>T	uc003uhx.2	-	4	3892	c.3603G>A	c.(3601-3603)GAG>GAA	p.E1201E	PCLO_uc003uhv.2_Silent_p.E1201E	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1140					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTTTGTCTTTCTCTAGTTTAC	0.348													44	46					0	0	0.003610	0	0
PCLO	27445	broad.mit.edu	37	7	82784668	82784668	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:82784668G>A	uc003uhx.2	-	2	1578	c.1289C>T	c.(1288-1290)CCA>CTA	p.P430L	PCLO_uc003uhv.2_Missense_Mutation_p.P430L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	381	Gln-rich.|Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGCCTTAGCTGGAGACTGTAG	0.582													90	172					0	0	0.003610	0	0
PCLO	27445	broad.mit.edu	37	7	82785194	82785194	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:82785194C>T	uc003uhx.2	-	2	1052	c.763G>A	c.(763-765)GGA>AGA	p.G255R	PCLO_uc003uhv.2_Missense_Mutation_p.G255R	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	255	Gln-rich.|Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ATTGGCTTTCCTGTACCTGGA	0.483													21	59					0	0	0.003954	0	0
DMTF1	9988	broad.mit.edu	37	7	86817483	86817483	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:86817483C>T	uc003uih.2	+	13	1603	c.1277C>T	c.(1276-1278)TCT>TTT	p.S426F	DMTF1_uc003uii.2_Missense_Mutation_p.S160F|DMTF1_uc003uij.2_Missense_Mutation_p.S160F|DMTF1_uc011khb.1_Missense_Mutation_p.S338F|DMTF1_uc003uik.2_RNA|DMTF1_uc003uil.2_Missense_Mutation_p.S426F|DMTF1_uc003uin.2_Missense_Mutation_p.S160F	NM_001142327	NP_001135799	Q9Y222	DMTF1_HUMAN	cyclin D binding myb-like transcription factor 1	426	Interaction with CCND1, CCND2 and CCND3 (By similarity).|Required for DNA-binding (By similarity).				cell cycle	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(14;0.0058)					AAATCAGGATCTGGAGTTCCA	0.408													99	106					0	0	0.003610	0	0
GJC3	349149	broad.mit.edu	37	7	99521204	99521204	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:99521204C>T	uc011kjd.1	-	2	804	c.804G>A	c.(802-804)CAG>CAA	p.Q268Q		NM_181538	NP_853516	Q8NFK1	CXG3_HUMAN	gap junction protein, gamma 3, 30.2kDa	268	Cytoplasmic (Potential).					connexon complex|integral to membrane				ovary(1)	1	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					tttgtttttcctgggctaagc	0													43	57					0	0	0.003610	0	0
STAG3	10734	broad.mit.edu	37	7	99796914	99796914	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:99796914C>G	uc003utx.1	+	15	1652	c.1497C>G	c.(1495-1497)GAC>GAG	p.D499E	STAG3_uc010lgs.1_Missense_Mutation_p.D287E|STAG3_uc011kjk.1_Missense_Mutation_p.D441E|STAG3_uc003uub.1_5'Flank	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	499					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					ACTTAGTAGACAGTCTGTGGG	0.527													38	163					0	0	0.003610	0	0
ZAN	7455	broad.mit.edu	37	7	100349627	100349627	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:100349627C>T	uc003uwj.2	+	14	2064	c.1899C>T	c.(1897-1899)CCC>CCT	p.P633P	ZAN_uc003uwk.2_Silent_p.P633P|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	633	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CAGAAAAACCCACCATTCCCT	0.502													63	66					0	0	0.003610	0	0
MUC17	140453	broad.mit.edu	37	7	100684421	100684421	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:100684421C>T	uc003uxp.1	+	3	9777	c.9724C>T	c.(9724-9726)CTT>TTT	p.L3242F	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3242	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|52.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GGCTAGCATCCTTTCAACAAC	0.502													285	480					0	0	0.003610	0	0
SPDYE6	729597	broad.mit.edu	37	7	101989062	101989063	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:101989062_101989063GG>AA	uc011kkp.1	-	6	1231_1232	c.810_811CC>TT	c.(808-813)TTCCAC>TTTTAC	p.H271Y	SPDYE6_uc003uzb.2_Missense_Mutation_p.H127Y	NM_001146210	NP_001139682	P0CI01	SPDE6_HUMAN	speedy homolog E6	271											0						TACAGGAAGTGGAAGATGTTTT	0.55													21	696					0	0	0.004672	0	0
PSMC2	5701	broad.mit.edu	37	7	103003164	103003164	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:103003164C>T	uc003vbs.2	+	6	524	c.454C>T	c.(454-456)CCA>TCA	p.P152S	SLC26A5_uc003vbt.1_Intron|SLC26A5_uc003vbu.1_Intron|SLC26A5_uc003vbv.1_Intron|PSMC2_uc011klo.1_Missense_Mutation_p.P15S	NM_002803	NP_002794	P35998	PRS7_HUMAN	proteasome 26S ATPase subunit 2	152					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding				0						AATTCACATTCCATTGCCTCC	0.313													75	109					0	0	0.003610	0	0
MLL5	55904	broad.mit.edu	37	7	104747620	104747620	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:104747620C>T	uc003vcm.2	+	21	3389	c.2855C>T	c.(2854-2856)TCT>TTT	p.S952F	MLL5_uc010ljc.2_Missense_Mutation_p.S952F|MLL5_uc010lje.1_RNA|MLL5_uc010ljf.1_5'Flank|MLL5_uc010ljg.2_5'Flank|MLL5_uc010ljh.1_5'Flank	NM_182931	NP_891847	Q8IZD2	MLL5_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 5	952					cell cycle arrest|cellular response to retinoic acid|DNA methylation|erythrocyte differentiation|neutrophil activation|neutrophil mediated immunity|positive regulation of granulocyte differentiation|positive regulation of transcription, DNA-dependent|retinoic acid receptor signaling pathway|transcription, DNA-dependent	MLL5-L complex|nuclear speck	enzyme binding|histone methyltransferase activity (H3-K4 specific)|transcription coactivator activity|zinc ion binding			ovary(2)|pancreas(1)	3						CAGAATATTTCTTCCCCAGAA	0.254													53	54					0	0	0.003610	0	0
ZC3HC1	51530	broad.mit.edu	37	7	129662210	129662210	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:129662210G>A	uc003vpi.2	-	9	1416	c.1389C>T	c.(1387-1389)ACC>ACT	p.T463T	ZC3HC1_uc003vph.2_Silent_p.T307T|ZC3HC1_uc010lma.2_Silent_p.T279T	NM_016478	NP_057562	Q86WB0	NIPA_HUMAN	zinc finger, C3HC type 1	463					cell division|mitosis	nucleus	protein kinase binding|zinc ion binding				0	Melanoma(18;0.0435)					CCAAGAGGATGGTCAGCACTG	0.552													79	136					0	0	0.003610	0	0
PLXNA4	91584	broad.mit.edu	37	7	131832690	131832690	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:131832690G>A	uc003vra.3	-	27	5062	c.4833C>T	c.(4831-4833)TCC>TCT	p.S1611S	PLXNA4_uc003vqz.3_5'Flank	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1611	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TGGAGACGGTGGAGTTGTTCA	0.537													107	110					0	0	0.003610	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				75	102					0	0	0.003610	0	0
MGAM	8972	broad.mit.edu	37	7	141730175	141730175	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:141730175C>T	uc003vwy.2	+	11	1289	c.1235C>T	c.(1234-1236)GCT>GTT	p.A412V		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	412	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GTTCAGCATGCTGATATTGAT	0.338													22	18					0	0	0.008361	0	0
TRYX3	136541	broad.mit.edu	37	7	141955016	141955016	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:141955016C>T	uc003vxb.2	-	3	615	c.295G>A	c.(295-297)GAT>AAT	p.D99N	TRYX3_uc003vxc.3_Missense_Mutation_p.D99N	NM_001001317	NP_001001317	Q8IYP2	PRS58_HUMAN	trypsin X3 precursor	99	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0	Melanoma(164;0.0272)					ATGTCATGATCAATAGAAGTG	0.403													87	174					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	7	142001108	142001108	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:142001108C>T	uc011kro.1	+	2	245	c.200C>T	c.(199-201)TCC>TTC	p.S67F						SubName: Full=V_segment translation product; Flags: Fragment;																		TTTCTGGTTTCCTTTTATAAT	0.398													9	9					0	0	0.006214	0	0
TRPV5	56302	broad.mit.edu	37	7	142627507	142627507	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:142627507C>T	uc003wby.1	-	2	427	c.163G>A	c.(163-165)GAA>AAA	p.E55K	TRPV5_uc003wbz.2_Missense_Mutation_p.E55K	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	55	ANK 1.|Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					AGGTCATTTTCCTTGGATGCT	0.512													78	126					0	0	0.003610	0	0
NOBOX	135935	broad.mit.edu	37	7	144098156	144098156	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:144098156C>T	uc011kue.1	-	4	827	c.827G>A	c.(826-828)CGA>CAA	p.R276Q		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox	276	Homeobox.				cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					GTATAGGGTTCGTGTCTTTTT	0.542													21	46					0	0	0.007291	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146829338	146829338	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:146829338G>A	uc003weu.1	+	8	1601	c.1085G>A	c.(1084-1086)GGA>GAA	p.G362E		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	362	Laminin G-like 1.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			ATTTTACAGGGAAATTTGAGC	0.433										HNSCC(39;0.1)			53	82					0	0	0.003610	0	0
GIMAP7	168537	broad.mit.edu	37	7	150217107	150217107	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:150217107G>A	uc003whk.2	+	2	175	c.45G>A	c.(43-45)GGG>GGA	p.G15G		NM_153236	NP_694968	Q8NHV1	GIMA7_HUMAN	GTPase, IMAP family member 7	15	GTP (Potential).						GTP binding			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TTCTGGTAGGGAAAACTGGAA	0.498													62	67					0	0	0.003610	0	0
PTPRN2	5799	broad.mit.edu	37	7	157926650	157926650	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:157926650C>T	uc003wno.2	-	9	1396	c.1275G>A	c.(1273-1275)AGG>AGA	p.R425R	PTPRN2_uc003wnp.2_Silent_p.R408R|PTPRN2_uc003wnq.2_Silent_p.R425R|PTPRN2_uc003wnr.2_Silent_p.R387R|PTPRN2_uc011kwa.1_Silent_p.R448R	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	425	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CGGACTTCTTCCTCTCCATGT	0.597													75	14					0	0	0.003610	0	0
CSMD1	64478	broad.mit.edu	37	8	2976018	2976018	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr8:2976018G>A	uc011kwk.1	-	42	6726	c.6336C>T	c.(6334-6336)TTC>TTT	p.F2112F	CSMD1_uc011kwj.1_Silent_p.F1504F|CSMD1_uc010lrg.2_Silent_p.F180F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2112	Extracellular (Potential).|Sushi 12.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GATAACACTCGAAAGATACTG	0.448													49	156					0	0	0.003610	0	0
PDLIM2	64236	broad.mit.edu	37	8	22442600	22442600	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr8:22442600G>A	uc003xby.2	+	5	786	c.386G>A	c.(385-387)AGC>AAC	p.S129N	PDLIM2_uc003xbx.1_Missense_Mutation_p.S129N|PDLIM2_uc003xbz.2_Missense_Mutation_p.S129N|PDLIM2_uc003xca.2_Missense_Mutation_p.S129N|PDLIM2_uc003xcb.2_Missense_Mutation_p.S129N|PDLIM2_uc003xcc.1_Missense_Mutation_p.S129N	NM_021630	NP_067643	Q96JY6	PDLI2_HUMAN	PDZ and LIM domain 2 isoform 2	129	Ser-rich.					actin cytoskeleton|cell surface|cytoplasm|focal adhesion|nucleus	zinc ion binding				0		Prostate(55;0.0421)|Breast(100;0.102)|all_epithelial(46;0.142)		BRCA - Breast invasive adenocarcinoma(99;0.00579)|Colorectal(74;0.0152)|COAD - Colon adenocarcinoma(73;0.0626)		ACCTCCCTCAGCCCGAGGGCC	0.617													63	149					0	0	0.003610	0	0
ADAM7	8756	broad.mit.edu	37	8	24356778	24356778	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr8:24356778G>A	uc003xeb.2	+	17	1985	c.1872G>A	c.(1870-1872)ATG>ATA	p.M624I	ADAM7_uc003xec.2_Missense_Mutation_p.M396I	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	624	Extracellular (Potential).|Cys-rich.				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		GTCTAAACATGGAAAAGGTCT	0.323													18	84					0	0	0.003330	0	0
PXDNL	137902	broad.mit.edu	37	8	52284631	52284631	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr8:52284631C>T	uc003xqu.3	-	19	3804	c.3703G>A	c.(3703-3705)GAA>AAA	p.E1235K	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1235					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CCAGGGTTTTCATACCAGAAC	0.502													7	4					0	0	0.003080	0	0
PXDNL	137902	broad.mit.edu	37	8	52321450	52321450	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr8:52321450C>T	uc003xqu.3	-	17	2835	c.2734G>A	c.(2734-2736)GAC>AAC	p.D912N	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	912					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				ACCGAAGGGTCTCTGAGAGCC	0.587													26	21					0	0	0.007291	0	0
RP1	6101	broad.mit.edu	37	8	55537465	55537465	+	Silent	SNP	A	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr8:55537465A>T	uc003xsd.1	+	4	1171	c.1023A>T	c.(1021-1023)ATA>ATT	p.I341I	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	341					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GATTCAGAATAAAAGAGGAAG	0.323													10	36					0	0	0.008291	0	0
RP1	6101	broad.mit.edu	37	8	55542157	55542157	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr8:55542157C>T	uc003xsd.1	+	4	5863	c.5715C>T	c.(5713-5715)GAC>GAT	p.D1905D	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1905					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AGGAAGCTGACTCTTTGGATA	0.408													128	83					0	0	0.003610	0	0
C8orf45	157777	broad.mit.edu	37	8	67786587	67786587	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr8:67786587C>T	uc003xwz.3	+	3	292	c.121C>T	c.(121-123)CGA>TGA	p.R41*	C8orf45_uc003xwv.2_Nonsense_Mutation_p.R41*|C8orf45_uc011lev.1_Nonsense_Mutation_p.R41*|C8orf45_uc011lew.1_Intron|C8orf45_uc011lex.1_Intron|C8orf45_uc003xwy.3_Nonsense_Mutation_p.R41*	NM_173518	NP_775789	Q4G0Z9	CH045_HUMAN	minichromosome maintenance complex	41					DNA replication		ATP binding|DNA binding			ovary(1)	1	Breast(64;0.186)		Epithelial(68;0.00384)|OV - Ovarian serous cystadenocarcinoma(28;0.00913)|all cancers(69;0.0175)|BRCA - Breast invasive adenocarcinoma(89;0.206)			TGCTGTCTATCGATTCAAAAT	0.303													13	22					0	0	0.001368	0	0
PREX2	80243	broad.mit.edu	37	8	69104697	69104697	+	Missense_Mutation	SNP	C	T	T	rs148366673		TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr8:69104697C>T	uc003xxv.1	+	37	4568	c.4541C>T	c.(4540-4542)TCC>TTC	p.S1514F		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1514					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity	p.S1514F(1)		skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						CTGTCAGTTTCCTCGGAGCTG	0.562													44	42					0	0	0.003610	0	0
CNBD1	168975	broad.mit.edu	37	8	87917361	87917361	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr8:87917361C>T	uc003ydy.2	+	3	259	c.211C>T	c.(211-213)CCT>TCT	p.P71S		NM_173538	NP_775809	Q8NA66	CNBD1_HUMAN	cyclic nucleotide binding domain containing 1	71										ovary(3)	3						GAAGCAATATCCTAAAGTATT	0.363													22	12					0	0	0.009535	0	0
POP1	10940	broad.mit.edu	37	8	99169988	99169988	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr8:99169988C>T	uc003yij.3	+	16	2664	c.2564C>T	c.(2563-2565)GCC>GTC	p.A855V	POP1_uc011lgv.1_Missense_Mutation_p.A855V|POP1_uc003yik.2_Missense_Mutation_p.A855V	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	855					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			TTCCCCAGGGCCCTGGTTTGG	0.632													27	82					0	0	0.007291	0	0
ODF1	4956	broad.mit.edu	37	8	103573072	103573072	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr8:103573072C>T	uc003ykt.2	+	2	821	c.713C>T	c.(712-714)CCC>CTC	p.P238L		NM_024410	NP_077721	Q14990	ODFP1_HUMAN	outer dense fiber of sperm tails 1	238	C-X-P repeat region.				cell differentiation|multicellular organismal development|spermatogenesis	outer dense fiber	structural molecule activity			ovary(2)	2	all_cancers(14;2.76e-05)|all_epithelial(15;4.54e-08)|Lung NSC(17;4.08e-05)|all_lung(17;9.15e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000125)|STAD - Stomach adenocarcinoma(118;0.0826)			CCGTGTTATCCCTGTGGAAGC	0.318													100	71					0	0	0.003610	0	0
RIMS2	9699	broad.mit.edu	37	8	104927787	104927787	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr8:104927787G>A	uc003yls.2	+	5	1452	c.1211G>A	c.(1210-1212)GGA>GAA	p.G404E	RIMS2_uc003ylp.2_Missense_Mutation_p.G626E|RIMS2_uc003ylw.2_Missense_Mutation_p.G434E|RIMS2_uc003ylq.2_Missense_Mutation_p.G434E|RIMS2_uc003ylr.2_Missense_Mutation_p.G481E|RIMS2_uc003ylt.2_Missense_Mutation_p.G27E|RIMS2_uc003ylu.1_Missense_Mutation_p.G17E|RIMS2_uc003ylv.1_Missense_Mutation_p.G17E	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	704	PDZ.				intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			GTAAAAAAAGGAAGTTTAGCT	0.323										HNSCC(12;0.0054)			19	62					0	0	0.002780	0	0
ANGPT1	284	broad.mit.edu	37	8	108315580	108315580	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr8:108315580C>T	uc003ymn.2	-	5	1292	c.824G>A	c.(823-825)GGA>GAA	p.G275E	ANGPT1_uc011lhv.1_Missense_Mutation_p.G75E|ANGPT1_uc003ymo.2_Missense_Mutation_p.G274E|ANGPT1_uc003ymp.3_Missense_Mutation_p.G74E	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	275					activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			CTCTCTTTTTCCTCCCTTTAG	0.313													31	51					0	0	0.003271	0	0
COL14A1	7373	broad.mit.edu	37	8	121379437	121379437	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr8:121379437G>A	uc003yox.2	+	46	5370	c.5105G>A	c.(5104-5106)GGA>GAA	p.G1702E	COL14A1_uc003yoz.2_Missense_Mutation_p.G667E	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1702	Triple-helical region 2 (COL1).				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			GGAGAAAAAGGAAATCCAGGC	0.353													20	30					0	0	0.004656	0	0
FAM83A	84985	broad.mit.edu	37	8	124195487	124195487	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr8:124195487G>A	uc003ypv.2	+	2	2405	c.391G>A	c.(391-393)GAA>AAA	p.E131K	FAM83A_uc003ypw.2_Missense_Mutation_p.E131K|FAM83A_uc003ypy.2_Missense_Mutation_p.E131K|FAM83A_uc003ypx.2_Missense_Mutation_p.E131K|FAM83A_uc003ypz.2_Missense_Mutation_p.E131K	NM_032899	NP_116288	Q86UY5	FA83A_HUMAN	hypothetical protein LOC84985 isoform a	131										ovary(3)|skin(1)	4	Lung NSC(37;1.55e-09)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			CTACCTGAAGGAAAAATCCAG	0.612													32	107					0	0	0.002836	0	0
ZC3H3	23144	broad.mit.edu	37	8	144621206	144621206	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr8:144621206G>A	uc003yyd.2	-	2	360	c.331C>T	c.(331-333)CTT>TTT	p.L111F		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3	111					mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding			skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			TGTCTCTCAAGGACATGCTGC	0.662													83	72					0	0	0.003610	0	0
EPPK1	83481	broad.mit.edu	37	8	144947384	144947384	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr8:144947384C>T	uc003zaa.1	-	1	51	c.38G>A	c.(37-39)GGC>GAC	p.G13D		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	13						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCTGTTGGTGCCTGGGACGGG	0.657													22	53					0	0	0.006320	0	0
OPLAH	26873	broad.mit.edu	37	8	145111918	145111918	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr8:145111918G>A	uc003zar.3	-	12	1721	c.1639C>T	c.(1639-1641)CTG>TTG	p.L547L	OPLAH_uc003zas.1_5'Flank	NM_017570	NP_060040	O14841	OPLA_HUMAN	5-oxoprolinase (ATP-hydrolysing)	547							5-oxoprolinase (ATP-hydrolyzing) activity|ATP binding				0	all_cancers(97;1.06e-10)|all_epithelial(106;1.5e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;2.24e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		L-Glutamic Acid(DB00142)	CTCTGGTCCAGCTGCACGAAG	0.682													5	11					0	0	0.001168	0	0
PTPRD	5789	broad.mit.edu	37	9	8518099	8518099	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr9:8518099G>A	uc003zkk.2	-	20	2003	c.1292C>T	c.(1291-1293)TCG>TTG	p.S431L	PTPRD_uc003zkp.2_Missense_Mutation_p.S431L|PTPRD_uc003zkq.2_Missense_Mutation_p.S431L|PTPRD_uc003zkr.2_Missense_Mutation_p.S425L|PTPRD_uc003zks.2_Missense_Mutation_p.S421L|PTPRD_uc003zkl.2_Missense_Mutation_p.S431L|PTPRD_uc003zkm.2_Missense_Mutation_p.S418L|PTPRD_uc003zkn.2_Missense_Mutation_p.S431L|PTPRD_uc003zko.2_Missense_Mutation_p.S428L	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	431	Fibronectin type-III 2.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		AATGGTGGTCGAACTCAACAT	0.502										TSP Lung(15;0.13)			51	122					0	0	0.003610	0	0
PTPRD	5789	broad.mit.edu	37	9	8518184	8518184	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr9:8518184G>A	uc003zkk.2	-	20	1918	c.1207C>T	c.(1207-1209)CCT>TCT	p.P403S	PTPRD_uc003zkp.2_Missense_Mutation_p.P403S|PTPRD_uc003zkq.2_Missense_Mutation_p.P403S|PTPRD_uc003zkr.2_Missense_Mutation_p.P397S|PTPRD_uc003zks.2_Missense_Mutation_p.P393S|PTPRD_uc003zkl.2_Missense_Mutation_p.P403S|PTPRD_uc003zkm.2_Missense_Mutation_p.P390S|PTPRD_uc003zkn.2_Missense_Mutation_p.P403S|PTPRD_uc003zko.2_Missense_Mutation_p.P400S	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	403	Fibronectin type-III 1.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TCGCTGGGAGGCCCCCGCCCA	0.537										TSP Lung(15;0.13)			58	98					0	0	0.003610	0	0
MLLT3	4300	broad.mit.edu	37	9	20414379	20414379	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr9:20414379G>A	uc003zoe.2	-	5	724	c.465C>T	c.(463-465)AGC>AGT	p.S155S	MLLT3_uc011lne.1_Silent_p.S123S|MLLT3_uc011lnf.1_Silent_p.S152S|MLLT3_uc003zof.2_5'UTR|MLLT3_uc011lng.1_Silent_p.S123S	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	155	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctactgctgctgctgc	0.149			T	MLL	ALL								4	24					0	0	0.001168	0	0
TJP2	9414	broad.mit.edu	37	9	71851101	71851101	+	Silent	SNP	G	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr9:71851101G>T	uc004ahe.2	+	13	2138	c.1938G>T	c.(1936-1938)CTG>CTT	p.L646L	TJP2_uc011lrs.1_Silent_p.L623L|TJP2_uc011lrt.1_Silent_p.L623L|TJP2_uc004ahd.2_Silent_p.L646L|TJP2_uc004ahf.2_Silent_p.L646L|TJP2_uc011lru.1_Silent_p.L650L|TJP2_uc011lrv.1_Silent_p.L668L	NM_004817	NP_004808	Q9UDY2	ZO2_HUMAN	tight junction protein 2 (zona occludens 2)	646	SH3.				cellular component disassembly involved in apoptosis	adherens junction|cytoplasm|nucleus|tight junction	guanylate kinase activity|protein binding				0						GCAACTGGCTGGCTGTGAGGA	0.522													31	61					2.75727e-19	2.82819e-19	0.004878	1	0
SLC44A1	23446	broad.mit.edu	37	9	108072074	108072074	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr9:108072074G>A	uc004bcn.2	+	3	417	c.196G>A	c.(196-198)GGA>AGA	p.G66R	SLC44A1_uc010mtk.1_Missense_Mutation_p.G66R	NM_080546	NP_536856	Q8WWI5	CTL1_HUMAN	CDW92 antigen	66	Mitochondrial intermembrane (Potential).					integral to membrane|mitochondrial outer membrane|plasma membrane	choline transmembrane transporter activity			breast(3)|ovary(1)	4					Choline(DB00122)	CGACAGCTATGGAAATATCTG	0.413													32	43					0	0	0.005524	0	0
SVEP1	79987	broad.mit.edu	37	9	113220765	113220765	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr9:113220765C>T	uc010mtz.2	-	20	3899	c.3562G>A	c.(3562-3564)GAA>AAA	p.E1188K	SVEP1_uc010mua.1_Missense_Mutation_p.E1188K	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1188					cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CTGCTGATTTCATGCCTCTTT	0.398													8	17					0	0	0.003080	0	0
C9orf84	158401	broad.mit.edu	37	9	114484769	114484769	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr9:114484769T>A	uc004bfr.2	-	13	1994	c.1859A>T	c.(1858-1860)AAA>ATA	p.K620I	C9orf84_uc011lwt.1_RNA|C9orf84_uc004bfq.2_Missense_Mutation_p.K581I|C9orf84_uc010mug.2_Missense_Mutation_p.K566I	NM_173521	NP_775792	Q5VXU9	CI084_HUMAN	hypothetical protein LOC158401 isoform 1	620										ovary(2)	2						AGTGGCAAATTTCCAATTAGC	0.408													38	28					0	0	0.006999	0	0
ZNF883	169834	broad.mit.edu	37	9	115760536	115760536	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr9:115760536C>T	uc011lwy.1	-	5	1243	c.4G>A	c.(4-6)GAA>AAA	p.E2K		NM_001101338	NP_001094808	P0CG24	ZN883_HUMAN	hypothetical protein LOC169834	2					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTCTCAGATTCCATCAGTACT	0.358													39	36					0	0	0.003610	0	0
TNC	3371	broad.mit.edu	37	9	117827034	117827034	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr9:117827034G>A	uc004bjj.3	-	11	3741	c.3379C>T	c.(3379-3381)CGG>TGG	p.R1127W	TNC_uc010mvf.2_Missense_Mutation_p.R1127W	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1127	Fibronectin type-III 6.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						TCCACAGCCCGAAGGCTGCCA	0.587													62	77					0	0	0.003610	0	0
DBC1	1620	broad.mit.edu	37	9	121929509	121929509	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr9:121929509C>T	uc004bkc.2	-	8	2595	c.2139G>A	c.(2137-2139)GGG>GGA	p.G713G		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	713					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GCTGGGGTTTCCCCGGGGCCA	0.552													43	52					0	0	0.003610	0	0
PHF19	26147	broad.mit.edu	37	9	123631465	123631465	+	Silent	SNP	G	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr9:123631465G>C	uc004bks.1	-	6	862	c.609C>G	c.(607-609)CCC>CCG	p.P203P	PHF19_uc011lyf.1_5'Flank|PHF19_uc004bkr.2_5'Flank	NM_015651	NP_056466	Q5T6S3	PHF19_HUMAN	PHD finger protein 19 isoform a	203	PHD-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|breast(1)	2						CTTACTCTCCGGGCCCGCCGC	0.682													3	11					0	0	0.009096	0	0
MXRA5	25878	broad.mit.edu	37	X	3228536	3228536	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chrX:3228536G>A	uc004crg.3	-	7	7865	c.7708C>T	c.(7708-7710)CCG>TCG	p.P2570S		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2570	Ig-like C2-type 10.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CTGGGTGTCGGGGTCCCCGCG	0.622													12	5					0	0	0.002450	0	0
MXRA5	25878	broad.mit.edu	37	X	3248289	3248289	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chrX:3248289C>T	uc004crg.3	-	4	636	c.479G>A	c.(478-480)GGA>GAA	p.G160E		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	160	LRR 5.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GAGGAGATTTCCTTCCAAATG	0.468													17	3					0	0	0.007413	0	0
GLOD5	392465	broad.mit.edu	37	X	48631747	48631747	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chrX:48631747G>A	uc011mmh.1	+	4	420	c.379G>A	c.(379-381)GAG>AAG	p.E127K		NM_001080489	NP_001073958			glyoxalase domain containing 5												0						CCCTATTGAGGAGGGGCCAGT	0.453													22	7					0	0	0.002780	0	0
PLP2	5355	broad.mit.edu	37	X	49029590	49029590	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chrX:49029590C>T	uc004dmx.2	+	2	286	c.211C>T	c.(211-213)CTG>TTG	p.L71L		NM_002668	NP_002659	Q04941	PLP2_HUMAN	proteolipid protein 2 (colonic	71	MARVEL.				chemotaxis|cytokine-mediated signaling pathway	endoplasmic reticulum membrane|integral to membrane|membrane fraction|plasma membrane	chemokine binding|ion transmembrane transporter activity				0						CATGTGTGACCTGCACACCAA	0.527													27	8					0	0	0.002096	0	0
AR	367	broad.mit.edu	37	X	66941765	66941765	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chrX:66941765G>A	uc004dwu.1	+	6	3524	c.2409G>A	c.(2407-2409)CAG>CAA	p.Q803Q	AR_uc004dwv.1_Silent_p.Q271Q	NM_000044	NP_000035	P10275	ANDR_HUMAN	androgen receptor isoform 1	802	Ligand-binding.|Interaction with MYST2.				cell death|cell growth|cell proliferation|cell-cell signaling|negative regulation of apoptosis|negative regulation of integrin biosynthetic process|positive regulation of cell proliferation|positive regulation of integrin biosynthetic process|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|regulation of establishment of protein localization in plasma membrane|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transport	cytoplasm|nuclear chromatin|nucleoplasm	androgen binding|androgen receptor activity|beta-catenin binding|enzyme binding|ligand-regulated transcription factor activity|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(3)|lung(2)|breast(2)|central_nervous_system(1)	8	all_cancers(1;0.173)|Prostate(1;2.27e-16)|all_epithelial(1;0.102)	all_lung(315;1.3e-11)			Bicalutamide(DB01128)|Cyproterone(DB04839)|Dromostanolone(DB00858)|Finasteride(DB01216)|Fluoxymesterone(DB01185)|Flutamide(DB00499)|Nandrolone(DB00984)|Nilutamide(DB00665)|Oxandrolone(DB00621)|Testosterone(DB00624)	TCACCCCCCAGGAATTCCTGT	0.537									Androgen_Insensitivity_Syndrome				57	11					0	0	0.003610	0	0
FAM155B	27112	broad.mit.edu	37	X	68749553	68749553	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chrX:68749553C>T	uc004dxk.2	+	3	1221	c.1173C>T	c.(1171-1173)TTC>TTT	p.F391F		NM_015686	NP_056501	O75949	F155B_HUMAN	transmembrane protein 28	392						integral to membrane				ovary(1)|breast(1)	2						actcctatttccaccactacc	0.403													13	1					0	0	0.001855	0	0
NONO	4841	broad.mit.edu	37	X	70511803	70511803	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chrX:70511803G>A	uc004dzo.2	+	5	1039	c.329G>A	c.(328-330)GGA>GAA	p.G110E	BCYRN1_uc011mpt.1_Intron|NONO_uc004dzn.2_Missense_Mutation_p.G110E|NONO_uc004dzp.2_Missense_Mutation_p.G110E|NONO_uc011mpv.1_Missense_Mutation_p.G21E|NONO_uc004dzq.2_5'Flank	NM_001145408	NP_001138880	Q15233	NONO_HUMAN	non-POU domain containing, octamer-binding	110	DBHS.|RRM 1.				DNA recombination|DNA repair|mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	nuclear matrix|paraspeckles	DNA binding|identical protein binding|nucleotide binding|RNA binding		NONO/TFE3(2)	ovary(2)|kidney(2)	4	Renal(35;0.156)					AAGGATAAAGGATTTGGCTTT	0.428			T	TFE3	papillary renal cancer								59	24					0	0	0.003610	0	0
NAP1L2	4674	broad.mit.edu	37	X	72434151	72434151	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chrX:72434151C>T	uc004ebi.2	-	1	534	c.178G>A	c.(178-180)GAA>AAA	p.E60K	NAP1L2_uc011mqj.1_Intron	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	60					nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					TCACCGTTTTCCCCTTCTTCC	0.582													23	2					0	0	0.003330	0	0
SLC16A2	6567	broad.mit.edu	37	X	73744598	73744598	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chrX:73744598G>C	uc004ebt.2	+	3	1368	c.1202G>C	c.(1201-1203)GGA>GCA	p.G401A	SLC16A2_uc010nlr.1_Missense_Mutation_p.G76A	NM_006517	NP_006508	P36021	MOT8_HUMAN	solute carrier family 16, member 2	327	Helical; (Potential).					integral to plasma membrane|membrane fraction	monocarboxylic acid transmembrane transporter activity|symporter activity			breast(2)|ovary(1)	3					Pyruvic acid(DB00119)	TGGGCCTTCGGAATTGCTGCT	0.577													42	12					0	0	0.003610	0	0
KIAA2022	340533	broad.mit.edu	37	X	73963377	73963377	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chrX:73963377G>A	uc004eby.2	-	3	1632	c.1015C>T	c.(1015-1017)CCC>TCC	p.P339S		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	339					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						AAGACGCTGGGAAAAAAGTTG	0.458													36	5					0	0	0.009718	0	0
CYLC1	1538	broad.mit.edu	37	X	83129108	83129108	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chrX:83129108G>A	uc004eei.1	+	4	1413	c.1392G>A	c.(1390-1392)GGG>GGA	p.G464G	CYLC1_uc004eeh.1_Silent_p.G463G	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	464	6.				cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						AAAAGAAGGGGAAGAAAGATT	0.353													6	2					0	0	0.004482	0	0
PCDH11X	27328	broad.mit.edu	37	X	91456430	91456430	+	Silent	SNP	G	A	A	rs143087998		TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chrX:91456430G>A	uc004efk.1	+	3	3935	c.3090G>A	c.(3088-3090)GAG>GAA	p.E1030E	PCDH11X_uc004efl.1_Silent_p.E1030E|PCDH11X_uc004efo.1_Intron|PCDH11X_uc010nmv.1_Silent_p.E1030E|PCDH11X_uc004efm.1_Silent_p.E1030E|PCDH11X_uc004efn.1_Silent_p.E1030E	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	1030	Cytoplasmic (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						CAACTATGGAGATCTGGATTC	0.378													33	7					0	0	0.002522	0	0
NXF2B	728343	broad.mit.edu	37	X	101576786	101576786	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chrX:101576786G>A	uc004eiv.3	+	27	3154	c.1282G>A	c.(1282-1284)GAC>AAC	p.D428N	NXF2B_uc004eiu.3_Missense_Mutation_p.D428N|NXF2B_uc004eiw.3_Missense_Mutation_p.D340N|NXF2_uc004eix.3_Missense_Mutation_p.D428N	NM_001099686	NP_001093156	Q9GZY0	NXF2_HUMAN	nuclear RNA export factor 2B	428	NTF2.				mRNA export from nucleus|multicellular organismal development	actin cytoskeleton|cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|RNA binding			ovary(1)	1						TATTCCCTTCGACCCCAAGGA	0.582													32	45					0	0	0.003610	0	0
NXF4	55999	broad.mit.edu	37	X	101821541	101821541	+	RNA	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chrX:101821541G>A	uc004ejf.1	+	13		c.1517G>A				NR_002216				Homo sapiens cDNA FLJ42710 fis, clone BRAMY3007609, moderately similar to Homo sapiens nuclear RNA export factor 2 (NXF2).												0						TCAACCCTGAGGACCCAGAAC	0.537													7	2					0	0	0.001984	0	0
NRK	203447	broad.mit.edu	37	X	105178250	105178250	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chrX:105178250G>A	uc004emd.2	+	20	3616	c.3313G>A	c.(3313-3315)GAG>AAG	p.E1105K	NRK_uc010npc.1_Missense_Mutation_p.E773K	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	1105							ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						CTTCTTTTAGGAGCCAGGTGG	0.423										HNSCC(51;0.14)			23	7					0	0	0.007291	0	0
TBC1D8B	54885	broad.mit.edu	37	X	106082652	106082652	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chrX:106082652C>T	uc004emo.2	+	8	1483	c.1318C>T	c.(1318-1320)CAC>TAC	p.H440Y	MORC4_uc004emp.3_Intron|TBC1D8B_uc004emn.2_Missense_Mutation_p.H440Y	NM_017752	NP_060222	Q0IIM8	TBC8B_HUMAN	TBC1 domain family, member 8B (with GRAM domain)	440						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GACAGTATTTCACCCTCAGAA	0.348													34	9					0	0	0.006999	0	0
USP26	83844	broad.mit.edu	37	X	132160053	132160053	+	Silent	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chrX:132160053G>A	uc010nrm.1	-	6	2666	c.2196C>T	c.(2194-2196)TTC>TTT	p.F732F	USP26_uc011mvf.1_Silent_p.F732F	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	732					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					ACACTTTTTGGAATCTTTCTG	0.398													47	11					0	0	0.003610	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994505	140994505	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chrX:140994505C>T	uc004fbt.2	+	4	1601	c.1315C>T	c.(1315-1317)CCC>TCC	p.P439S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	439							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TGAGGGTTTTCCCCAGTCTCC	0.458										HNSCC(15;0.026)			47	16					0	0	0.003610	0	0
SPANXN2	494119	broad.mit.edu	37	X	142795380	142795380	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chrX:142795380C>T	uc004fbz.2	-	2	1052	c.298G>A	c.(298-300)GAA>AAA	p.E100K		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	100										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TCCAGGTCTTCGTCCTCCTGT	0.532													149	62					0	0	0.003610	0	0
FATE1	89885	broad.mit.edu	37	X	150889962	150889962	+	Silent	SNP	C	T	T			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chrX:150889962C>T	uc004fex.2	+	3	414	c.330C>T	c.(328-330)TTC>TTT	p.F110F		NM_033085	NP_149076	Q969F0	FATE1_HUMAN	fetal and adult testis expressed transcript	110						endoplasmic reticulum|integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GCATACGTTTCCATTATGATC	0.602													24	10					0	0	0.005443	0	0
CNGA2	1260	broad.mit.edu	37	X	150912014	150912014	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chrX:150912014G>A	uc004fey.1	+	7	1263	c.1039G>A	c.(1039-1041)GAT>AAT	p.D347N		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	347	Cytoplasmic (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCCTGTAAAGGATGAGGAGTA	0.493													56	15					0	0	0.003610	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303977	151303977	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chrX:151303977G>A	uc004ffk.2	-	5	524	c.116C>T	c.(115-117)TCA>TTA	p.S39L	MAGEA10_uc004ffl.2_Missense_Mutation_p.S39L	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	39											0	Acute lymphoblastic leukemia(192;6.56e-05)					AGTGGATGATGAAGCATCCTC	0.413													21	10					0	0	0.008871	0	0
ANK3	288	broad.mit.edu	37	10	61828745	61828747	+	In_Frame_Del	DEL	GTG	-	-			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr10:61828745_61828747delGTG	uc001jky.2	-	37	12084_12086	c.11892_11894delCAC	c.(11890-11895)ACCACT>ACT	p.3964_3965TT>T	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3964_3965	Thr-rich.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						ggtggtggcagtggtggtggtgg	0.320													7	97	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	31298394	31298394	+	Frame_Shift_Del	DEL	T	-	-			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr12:31298394delT	uc010sjy.1	-	12	1591	c.1591delA	c.(1591-1593)ATTfs	p.I531fs						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		TCAGCCACAATTTCCCCACTG	0.507													7	35	---	---	---	---					
CCDC70	83446	broad.mit.edu	37	13	52439773	52439793	+	In_Frame_Del	DEL	TGGGAAGAGGAGAGACCTTTC	-	-	rs74087831	byFrequency	TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr13:52439773_52439793delTGGGAAGAGGAGAGACCTTTC	uc001vfu.3	+	2	555_575	c.259_279delTGGGAAGAGGAGAGACCTTTC	c.(259-279)TGGGAAGAGGAGAGACCTTTCdel	p.WEEERPF87del	uc010tgr.1_RNA	NM_031290	NP_112580	Q6NSX1	CCD70_HUMAN	coiled-coil domain containing 70 precursor	87_93						extracellular region|plasma membrane					0		Breast(56;0.000207)|Lung NSC(96;0.00145)|Prostate(109;0.0107)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;2.4e-08)		CCTGGGTTTTTGGGAAGAGGAGAGACCTTTCTGGGAAGAGG	0.443													24	46	---	---	---	---					
RBM11	54033	broad.mit.edu	37	21	15596777	15596777	+	Frame_Shift_Del	DEL	G	-	-			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr21:15596777delG	uc002yjo.3	+	4	393	c.351delG	c.(349-351)GTGfs	p.V117fs	RBM11_uc002yjn.3_Frame_Shift_Del_p.V3fs|RBM11_uc002yjp.3_Frame_Shift_Del_p.V3fs	NM_144770	NP_658983	P57052	RBM11_HUMAN	RNA binding motif protein 11	117							nucleotide binding|RNA binding				0				Epithelial(23;0.000314)|COAD - Colon adenocarcinoma(22;0.00242)|Colorectal(24;0.0129)|Lung(58;0.141)		AAATGTTGGTGGGCAGATCTT	0.299													2	4	---	---	---	---					
SLCO6A1	133482	broad.mit.edu	37	5	101735412	101735412	+	Frame_Shift_Del	DEL	A	-	-			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr5:101735412delA	uc003knn.2	-	10	1833	c.1661delT	c.(1660-1662)TTAfs	p.L554fs	SLCO6A1_uc003kno.2_Frame_Shift_Del_p.L301fs|SLCO6A1_uc003knp.2_Frame_Shift_Del_p.L554fs|SLCO6A1_uc003knq.2_Frame_Shift_Del_p.L492fs	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	554	Extracellular (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		TGCAGTTATTAATCCTTCTTT	0.328													30	128	---	---	---	---					
PEX1	5189	broad.mit.edu	37	7	92146721	92146721	+	Frame_Shift_Del	DEL	T	-	-			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr7:92146721delT	uc003uly.2	-	5	1204	c.1108delA	c.(1108-1110)ATTfs	p.I370fs	PEX1_uc011khr.1_Frame_Shift_Del_p.I162fs|PEX1_uc010ley.2_Frame_Shift_Del_p.I370fs|PEX1_uc011khs.1_Intron|PEX1_uc011kht.1_RNA	NM_000466	NP_000457	O43933	PEX1_HUMAN	peroxin1	370					microtubule-based peroxisome localization|protein import into peroxisome matrix	cytosol|nucleus|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)|central_nervous_system(1)	2	all_cancers(62;9.35e-11)|all_epithelial(64;4.59e-10)|Breast(17;0.00201)|all_lung(186;0.0438)|Lung NSC(181;0.0592)	Breast(660;0.000932)|all_neural(109;0.00391)|Myeloproliferative disorder(862;0.0122)|Ovarian(593;0.023)|Medulloblastoma(109;0.123)	GBM - Glioblastoma multiforme(5;4.06e-06)|STAD - Stomach adenocarcinoma(4;4.51e-05)|all cancers(6;5.32e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			TCTGACCTAATTTTTTTTTGA	0.353													8	213	---	---	---	---					
FAM160B2	64760	broad.mit.edu	37	8	21951976	21951977	+	Frame_Shift_Ins	INS	-	GGCC	GGCC			TCGA-D3-A3MU-06A-11D-A21A-08	TCGA-D3-A3MU-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	c914f9ad-27ff-4014-a1f8-bacdd94a77c8	d97087fc-784c-43df-952b-55b327c4c353	g.chr8:21951976_21951977insGGCC	uc011kyx.1	+	2	122_123	c.71_72insGGCC	c.(70-72)CAGfs	p.Q24fs	FAM160B2_uc011kyw.1_Frame_Shift_Ins_p.Q24fs|FAM160B2_uc011kyy.1_RNA	NM_022749	NP_073586	Q86V87	F16B2_HUMAN	retinoic acid induced 16	24											0						GACCTGCTGCAGGCCTTCGTGG	0.663													97	154	---	---	---	---					
