Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
GLTPD1	80772	broad.mit.edu	37	1	1262675	1262675	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:1262675C>T	uc001aeo.2	+	3	592	c.177C>T	c.(175-177)TCC>TCT	p.S59S	CPSF3L_uc001aee.1_5'Flank|CPSF3L_uc001aef.1_5'Flank|CPSF3L_uc009vjz.1_5'Flank|CPSF3L_uc010nyj.1_5'Flank|CPSF3L_uc001aeg.1_5'Flank|CPSF3L_uc001aeh.1_5'Flank|CPSF3L_uc001aei.1_5'Flank|CPSF3L_uc001aej.1_5'Flank|CPSF3L_uc001aek.1_5'Flank|CPSF3L_uc001aem.1_5'Flank|CPSF3L_uc001ael.1_5'Flank|CPSF3L_uc001aen.1_5'Flank	NM_001029885	NP_001025056	Q5TA50	GLTD1_HUMAN	glycolipid transfer protein domain containing 1	59						cytoplasm	glycolipid binding|glycolipid transporter activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;4.95e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		ACGTGGTCTCCAAGCTGCGGA	0.662													20	7					0	0	0.667858	0	0
RNF207	388591	broad.mit.edu	37	1	6273205	6273205	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:6273205C>T	uc001amg.2	+	16	1788	c.1614C>T	c.(1612-1614)GTC>GTT	p.V538V	RNF207_uc010nzp.1_RNA	NM_207396	NP_997279	Q6ZRF8	RN207_HUMAN	ring finger protein 207	538						intracellular	zinc ion binding				0	Ovarian(185;0.0634)	all_cancers(23;1.22e-38)|all_epithelial(116;4.25e-22)|all_lung(118;7.95e-08)|Lung NSC(185;1.6e-06)|all_neural(13;3.18e-06)|all_hematologic(16;8.99e-06)|Acute lymphoblastic leukemia(12;0.000365)|Breast(487;0.000496)|Renal(390;0.0007)|Colorectal(325;0.00104)|Glioma(11;0.00203)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)|Medulloblastoma(700;0.211)		Epithelial(90;4.84e-38)|GBM - Glioblastoma multiforme(13;5.77e-32)|OV - Ovarian serous cystadenocarcinoma(86;2.88e-19)|Colorectal(212;6.9e-08)|COAD - Colon adenocarcinoma(227;8.13e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00108)|STAD - Stomach adenocarcinoma(132;0.00311)|READ - Rectum adenocarcinoma(331;0.0642)|Lung(427;0.182)		CGCCCTACGTCCGCTCCATTG	0.597													28	9					0	0	0.760397	0	0
CLCN6	1185	broad.mit.edu	37	1	11884570	11884570	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:11884570T>C	uc001ate.3	+	8	721	c.608T>C	c.(607-609)ATG>ACG	p.M203T	CLCN6_uc009vnf.1_Missense_Mutation_p.M203T|CLCN6_uc009vng.1_Missense_Mutation_p.M203T|CLCN6_uc009vnh.1_Missense_Mutation_p.M203T|CLCN6_uc010oat.1_5'UTR|CLCN6_uc010oau.1_Missense_Mutation_p.M181T	NM_001286	NP_001277	P51797	CLCN6_HUMAN	chloride channel 6 isoform ClC-6a	203	Helical; (By similarity).				cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		GAAGGCCCCATGATCCACAGT	0.597													14	16					0	0	0.557998	0	0
PRAMEF12	390999	broad.mit.edu	37	1	12837292	12837292	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:12837292C>T	uc001aui.2	+	3	1029	c.1002C>T	c.(1000-1002)TTC>TTT	p.F334F		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	334	LRR 1.									ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGACCCATTTCAGTCCTGAGC	0.572													52	8					0	0	0.870114	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18809753	18809753	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:18809753C>A	uc001bax.2	+	1	2330	c.2278C>A	c.(2278-2280)CTC>ATC	p.L760I	KLHDC7A_uc009vpg.2_Intron	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	760						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GCAGGGCACCCTCCTGCCCAC	0.657													19	56					2.27525e-19	2.29646e-19	0.667858	1	0
PAX7	5081	broad.mit.edu	37	1	18961677	18961677	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:18961677G>A	uc001bay.2	+	3	992	c.394G>A	c.(394-396)GAG>AAG	p.E132K	PAX7_uc001baz.2_Missense_Mutation_p.E132K|PAX7_uc010oct.1_Missense_Mutation_p.E132K	NM_002584	NP_002575	P23759	PAX7_HUMAN	paired box 7 isoform 1	132	Paired.				anti-apoptosis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		PAX7/FOXO1(197)	soft_tissue(197)|lung(3)|prostate(1)|ovary(1)|breast(1)	203		Colorectal(325;3.46e-05)|all_lung(284;0.000439)|Renal(390;0.000518)|Lung NSC(340;0.000543)|Breast(348;0.00093)|Ovarian(437;0.00768)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00609)|BRCA - Breast invasive adenocarcinoma(304;4.71e-05)|Kidney(64;0.000279)|KIRC - Kidney renal clear cell carcinoma(64;0.00371)|STAD - Stomach adenocarcinoma(196;0.00658)|READ - Rectum adenocarcinoma(331;0.0576)		GTTCAGCTGGGAGATCCGGGA	0.587			T	FOXO1A	alveolar rhabdomyosarcoma								46	21					0	0	0.870114	0	0
KIF17	57576	broad.mit.edu	37	1	20992747	20992747	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:20992747C>T	uc001bdr.3	-	14	2989	c.2871G>A	c.(2869-2871)CGG>CGA	p.R957R	KIF17_uc001bdp.3_Silent_p.R234R|KIF17_uc001bdq.3_Silent_p.R235R|KIF17_uc009vpx.2_Silent_p.R327R|KIF17_uc001bds.3_Silent_p.R956R	NM_020816	NP_065867	Q9P2E2	KIF17_HUMAN	kinesin family member 17 isoform a	957				R -> W (in Ref. 1; AAR33039 and 4; BAA92643).	microtubule-based movement|protein transport	cytoplasm|microtubule	ATP binding			ovary(3)|skin(1)	4		all_lung(284;2.99e-05)|Lung NSC(340;3.26e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|COAD - Colon adenocarcinoma(152;1.43e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000168)|Kidney(64;0.000221)|GBM - Glioblastoma multiforme(114;0.000651)|KIRC - Kidney renal clear cell carcinoma(64;0.0031)|STAD - Stomach adenocarcinoma(196;0.00336)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.209)		TCTGGCTGGCCCGCTTAGATC	0.597													65	22					0	0	0.870114	0	0
HMGB4	127540	broad.mit.edu	37	1	34330332	34330332	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:34330332G>A	uc001bxp.2	+	2	2283	c.540G>A	c.(538-540)GGG>GGA	p.G180G	CSMD2_uc001bxm.1_Intron|CSMD2_uc001bxn.1_Intron|HMGB4_uc001bxq.2_Silent_p.G106G	NM_145205	NP_660206	Q8WW32	HMGB4_HUMAN	HMG2 like isoform 1	180						nucleus	DNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				GGTGCAGAGGGAAAAGAGTCA	0.453													13	20					0	0	0.539581	0	0
CSF3R	1441	broad.mit.edu	37	1	36932012	36932012	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:36932012G>A	uc001caw.1	-	17	2635	c.2457C>T	c.(2455-2457)TTC>TTT	p.F819F	MRPS15_uc001cas.2_5'Flank|CSF3R_uc001cat.1_Silent_p.F381F|CSF3R_uc009vvc.1_Silent_p.F348F|CSF3R_uc001cau.1_Silent_p.F219F|CSF3R_uc001cav.1_Intron|CSF3R_uc001cax.1_Silent_p.F846F|CSF3R_uc001cay.1_3'UTR	NM_000760	NP_000751	Q99062	CSF3R_HUMAN	colony stimulating factor 3 receptor isoform a	819	Cytoplasmic (Potential).				cell adhesion|defense response	extracellular region|integral to plasma membrane	cytokine receptor activity			central_nervous_system(2)|ovary(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)			Filgrastim(DB00099)|Pegfilgrastim(DB00019)	GCAGGAGGGGGAAGTTGAGCA	0.632													8	5					0	0	0.387290	0	0
MFSD2A	84879	broad.mit.edu	37	1	40432817	40432817	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:40432817C>T	uc001cev.2	+	9	1207	c.1026C>T	c.(1024-1026)TTC>TTT	p.F342F	MFSD2A_uc010ojb.1_Silent_p.F290F|MFSD2A_uc001ceu.2_Silent_p.F329F|MFSD2A_uc010ojc.1_Silent_p.F173F|MFSD2A_uc009vvy.2_RNA|MFSD2A_uc001cex.2_5'UTR	NM_001136493	NP_001129965	Q8NA29	MFS2A_HUMAN	major facilitator superfamily domain containing	342					transmembrane transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)|pancreas(1)	2						GCAATGAATTCCAGAATCTAC	0.547													37	17					0	0	0.870114	0	0
MUTYH	4595	broad.mit.edu	37	1	45797205	45797205	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:45797205A>G	uc001cnm.2	-	13	1417	c.1201T>C	c.(1201-1203)TTC>CTC	p.F401L	MUTYH_uc009vxn.2_Missense_Mutation_p.F226L|MUTYH_uc001cnf.2_Missense_Mutation_p.F376L|MUTYH_uc009vxo.2_Missense_Mutation_p.F376L|MUTYH_uc001cng.2_Missense_Mutation_p.F387L|MUTYH_uc001cnj.2_Missense_Mutation_p.F284L|MUTYH_uc001cni.2_Missense_Mutation_p.F376L|MUTYH_uc001cnh.2_Missense_Mutation_p.F377L|MUTYH_uc001cno.2_Missense_Mutation_p.F284L|MUTYH_uc001cnk.2_Missense_Mutation_p.F261L|MUTYH_uc010oll.1_Missense_Mutation_p.F85L|MUTYH_uc001cnl.2_Missense_Mutation_p.F390L|MUTYH_uc009vxp.2_Missense_Mutation_p.F404L|MUTYH_uc001cnn.2_Missense_Mutation_p.F391L	NM_012222	NP_036354	Q9UIF7	MUTYH_HUMAN	mutY homolog isoform 1	401	Nudix hydrolase.				depurination|mismatch repair	nucleoplasm	4 iron, 4 sulfur cluster binding|DNA N-glycosylase activity|endonuclease activity|metal ion binding|MutSalpha complex binding				0	Acute lymphoblastic leukemia(166;0.155)					ACGGACGGGAACTCCCACAGT	0.652			Mis			colorectal		BER_DNA_glycosylases	MUTYH-associated_polyposis				20	3					0	0	0.624587	0	0
CYP4X1	260293	broad.mit.edu	37	1	47512182	47512182	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:47512182G>A	uc001cqt.2	+	9	1367	c.1117G>A	c.(1117-1119)GAG>AAG	p.E373K	CYP4X1_uc001cqr.2_Missense_Mutation_p.E372K|CYP4X1_uc001cqs.2_Missense_Mutation_p.E308K	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	373						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						GTGCATCAAGGAGACGTGCCG	0.493													35	17					0	0	0.859065	0	0
CYP4Z1	199974	broad.mit.edu	37	1	47533331	47533331	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:47533331C>T	uc001cqu.1	+	1	172	c.169C>T	c.(169-171)CAC>TAC	p.H57Y		NM_178134	NP_835235	Q86W10	CP4Z1_HUMAN	cytochrome P450 4Z1	57	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			skin(1)	1						GTTCTATGGCCACAAGGAGGT	0.458													46	17					0	0	0.870114	0	0
C1orf168	199920	broad.mit.edu	37	1	57258315	57258315	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:57258315G>A	uc001cym.3	-	2	577	c.171C>T	c.(169-171)TCC>TCT	p.S57S	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Silent_p.S57S	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	57										ovary(3)|skin(2)	5						GCTTGTGGTTGGATGAGAGGG	0.458													69	29					0	0	0.870114	0	0
C8A	731	broad.mit.edu	37	1	57378172	57378172	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:57378172G>A	uc001cyo.2	+	10	1609	c.1477G>A	c.(1477-1479)GAA>AAA	p.E493K		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	493	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						GTATCTGATGGAATTCAATGC	0.632													37	18					0	0	0.847076	0	0
WLS	79971	broad.mit.edu	37	1	68659877	68659877	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:68659877G>A	uc001def.1	-	2	411	c.140C>T	c.(139-141)TCG>TTG	p.S47L	uc001deb.1_Intron|uc001dec.1_Intron|WLS_uc001dee.2_Missense_Mutation_p.S45L|WLS_uc001deg.1_Intron|WLS_uc001deh.1_Missense_Mutation_p.S47L|WLS_uc009wbf.1_Missense_Mutation_p.S2L	NM_024911	NP_079187	Q5T9L3	WLS_HUMAN	G protein-coupled receptor 177 isoform 1	47	Lumenal (Potential).				multicellular organismal development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Wnt receptor signaling pathway	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	signal transducer activity				0						ACATTTCACCGACATGTAGGA	0.443													17	10					0	0	0.624587	0	0
ELTD1	64123	broad.mit.edu	37	1	79403674	79403674	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:79403674T>C	uc001diq.3	-	6	734	c.578A>G	c.(577-579)GAA>GGA	p.E193G		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	193	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		TTTTACAAATTCCTATTGAAA	0.299													12	4					0	0	0.457914	0	0
BARHL2	343472	broad.mit.edu	37	1	91180150	91180150	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:91180150C>T	uc001dns.2	-	2	831	c.789G>A	c.(787-789)ATG>ATA	p.M263I		NM_020063	NP_064447	Q9NY43	BARH2_HUMAN	BarH-like homeobox 2	263	Homeobox.					nucleus	sequence-specific DNA binding			ovary(1)	1		all_lung(203;0.0263)|Lung SC(238;0.128)		all cancers(265;0.000897)|Epithelial(280;0.00516)|OV - Ovarian serous cystadenocarcinoma(397;0.211)		CAGCCAGGTCCATGCGATCCT	0.567													51	20					0	0	0.870114	0	0
AMY2A	279	broad.mit.edu	37	1	104163193	104163193	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:104163193G>A	uc001dut.2	+	5	829	c.765G>A	c.(763-765)GAG>GAA	p.E255E		NM_000699	NP_000690	P04746	AMYP_HUMAN	pancreatic amylase alpha 2A precursor	255					carbohydrate catabolic process|polysaccharide digestion	extracellular space	alpha-amylase activity|calcium ion binding|chloride ion binding			ovary(1)|skin(1)	2		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0654)|all cancers(265;0.0808)|Epithelial(280;0.0921)|Lung(183;0.111)	Acarbose(DB00284)|Bentiromide(DB00522)|Icodextrin(DB00702)|Miglitol(DB00491)|Pancrelipase(DB00085)	TGGGTGGTGAGCCAATTAAAA	0.353													13	61					0	0	0.870114	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			91	42					0	0	0.870114	0	0
SPAG17	200162	broad.mit.edu	37	1	118598459	118598459	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:118598459C>T	uc001ehk.2	-	19	2687	c.2619G>A	c.(2617-2619)ATG>ATA	p.M873I		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	873						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TTTTCTCATTCATTTTAGATT	0.328													29	10					0	0	0.706142	0	0
PLEKHO1	51177	broad.mit.edu	37	1	150129151	150129151	+	Missense_Mutation	SNP	C	T	T	rs141386276		TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:150129151C>T	uc001ett.2	+	4	643	c.365C>T	c.(364-366)TCG>TTG	p.S122L	PLEKHO1_uc001etr.2_5'UTR|PLEKHO1_uc001ets.2_5'UTR|PLEKHO1_uc001etu.2_5'UTR	NM_016274	NP_057358	Q53GL0	PKHO1_HUMAN	pleckstrin homology domain containing, family O	122	PH.					cytoplasm|nucleus|plasma membrane				lung(1)	1	Lung NSC(24;7.78e-28)|Breast(34;0.00211)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			GAGAAGGAATCGTGGATCAAT	0.567													88	28					0	0	0.870114	0	0
FAM63A	55793	broad.mit.edu	37	1	150971967	150971967	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:150971967G>A	uc001ewf.2	-	8	2543	c.859C>T	c.(859-861)CTG>TTG	p.L287L	FAM63A_uc001ewc.2_Silent_p.L145L|FAM63A_uc010pcm.1_Silent_p.L192L|FAM63A_uc001ewd.2_Silent_p.L145L|FAM63A_uc001ewe.2_Silent_p.L121L|FAM63A_uc010pcn.1_Silent_p.L335L|FAM63A_uc001ewg.2_Silent_p.L287L	NM_018379	NP_001156731	Q8N5J2	FA63A_HUMAN	hypothetical protein LOC55793 isoform 1	287				L -> P (in Ref. 2; BAA92104).			protein binding			ovary(1)	1	all_lung(15;1.09e-34)|Lung NSC(24;1.1e-30)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GTGGTCTCCAGGAACTGCTCT	0.557													142	33					0	0	0.870114	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059343	152059343	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:152059343G>A	uc001ezo.1	-	3	880	c.815C>T	c.(814-816)CCA>CTA	p.P272L		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	272							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			ATCTTCACATGGTCTTTGTGT	0.433													77	21					0	0	0.870114	0	0
KPRP	448834	broad.mit.edu	37	1	152732493	152732493	+	Silent	SNP	T	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:152732493T>C	uc001fal.1	+	2	487	c.429T>C	c.(427-429)ACT>ACC	p.T143T		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	143	Gln-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATACAGAAACTTGTTATGTAG	0.512													108	29					0	0	0.870114	0	0
DENND4B	9909	broad.mit.edu	37	1	153906074	153906074	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:153906074G>T	uc001fdd.1	-	20	3616	c.3215C>A	c.(3214-3216)CCT>CAT	p.P1072H	uc001fdc.1_Intron	NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	1072										ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GCGGGAGGCAGGGGAGTGGCG	0.721													16	4					1.87028e-06	1.87771e-06	0.608945	1	0
UBAP2L	9898	broad.mit.edu	37	1	154229841	154229841	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:154229841C>T	uc001fep.3	+	20	2540	c.2373C>T	c.(2371-2373)CTC>CTT	p.L791L	UBAP2L_uc009wot.2_Silent_p.L791L|UBAP2L_uc010pek.1_Silent_p.L783L|UBAP2L_uc010pel.1_Silent_p.L801L|UBAP2L_uc010pen.1_Silent_p.L705L|UBAP2L_uc001feq.2_5'UTR|UBAP2L_uc001fer.2_5'UTR	NM_014847	NP_055662	Q14157	UBP2L_HUMAN	ubiquitin associated protein 2-like isoform a	791					binding of sperm to zona pellucida		protein binding			ovary(1)|central_nervous_system(1)	2	all_lung(78;1.09e-30)|Lung NSC(65;1.66e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			CTCCCAACCTCCCTCCTGGGG	0.468													29	13					0	0	0.819951	0	0
NES	10763	broad.mit.edu	37	1	156639850	156639851	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:156639850_156639851GG>AA	uc001fpq.2	-	4	4262_4263	c.4129_4130CC>TT	c.(4129-4131)CCT>TTT	p.P1377F		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	1377	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					AGGAAGAAAAGGTGCCTCAGTC	0.52													22	5					0	0	0.115264	0	0
INSRR	3645	broad.mit.edu	37	1	156819156	156819156	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:156819156G>A	uc010pht.1	-	6	1580	c.1326C>T	c.(1324-1326)TTC>TTT	p.F442F	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	442					protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GGTTGAAGGCGAAGTAGATCT	0.602													105	30					0	0	0.870114	0	0
OR10T2	128360	broad.mit.edu	37	1	158368942	158368942	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:158368942G>A	uc010pih.1	-	1	315	c.315C>T	c.(313-315)TTC>TTT	p.F105F		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	105	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					CAAAGCCAAGGAAAAAGAACA	0.498													38	13					0	0	0.827153	0	0
OR10J1	26476	broad.mit.edu	37	1	159409937	159409937	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:159409937G>A	uc010piv.1	+	1	389	c.389G>A	c.(388-390)GGA>GAA	p.G130E	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	130	Helical; Name=3; (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					ACAGCAATGGGATATGACCGC	0.502													69	23					0	0	0.870114	0	0
USP21	27005	broad.mit.edu	37	1	161130686	161130686	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:161130686C>T	uc010pke.1	+	3	633	c.256C>T	c.(256-258)CAT>TAT	p.H86Y	USP21_uc010pkc.1_Missense_Mutation_p.H86Y|USP21_uc010pkd.1_Missense_Mutation_p.H86Y|USP21_uc010pkf.1_Missense_Mutation_p.H86Y	NM_001014443	NP_001014443	Q9UK80	UBP21_HUMAN	ubiquitin-specific protease 21	86					histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	nucleus	metal ion binding|NEDD8-specific protease activity|protein binding|transcription coactivator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|lung(1)|prostate(1)|breast(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			TCGAGCAGATCATGGGGTTCC	0.637													26	7					0	0	0.729181	0	0
DNM3	26052	broad.mit.edu	37	1	171890926	171890926	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:171890926G>A	uc001gie.2	+	2	376	c.200G>A	c.(199-201)CGA>CAA	p.R67Q	DNM3_uc001gid.3_Missense_Mutation_p.R67Q|DNM3_uc009wwb.2_Missense_Mutation_p.R67Q|DNM3_uc001gif.2_Missense_Mutation_p.R67Q	NM_015569	NP_056384	Q9UQ16	DYN3_HUMAN	dynamin 3 isoform a	67					endocytosis|filopodium assembly|synapse assembly	dendritic spine|microtubule|perinuclear region of cytoplasm|postsynaptic density	GTP binding|GTPase activity|protein binding			breast(1)	1						GTAACAAGACGACCTCTTGTG	0.433													10	3					0	0	0.361761	0	0
FAM5B	57795	broad.mit.edu	37	1	177247853	177247853	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:177247853C>T	uc001glf.2	+	7	1479	c.1167C>T	c.(1165-1167)ATC>ATT	p.I389I	FAM5B_uc010pna.1_Silent_p.I139I|FAM5B_uc001glg.2_Silent_p.I284I	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	389						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CCCATCGGATCCTACGCCGGC	0.612													75	14					0	0	0.870114	0	0
C1orf125	126859	broad.mit.edu	37	1	179460829	179460829	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:179460829G>A	uc001gmo.2	+	19	2375	c.2248G>A	c.(2248-2250)GAA>AAA	p.E750K	C1orf125_uc009wxg.2_RNA|C1orf125_uc010pnl.1_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.E750K|C1orf125_uc009wxh.2_RNA	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	750											0						AGATGCGATTGAACTGACAAG	0.418													115	36					0	0	0.870114	0	0
CACNA1E	777	broad.mit.edu	37	1	181740455	181740455	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:181740455G>A	uc001gow.2	+	36	5073	c.4908G>A	c.(4906-4908)GAG>GAA	p.E1636E	CACNA1E_uc009wxs.2_Silent_p.E1524E|CACNA1E_uc001gox.1_Silent_p.E862E|CACNA1E_uc009wxt.2_Silent_p.E862E	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1636	Extracellular (Potential).|IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						AATTAGACGAGGAGAGTCACA	0.463													5	2					0	0	0.307466	0	0
ZBTB41	360023	broad.mit.edu	37	1	197128925	197128925	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:197128925G>A	uc001gtx.1	-	10	2363	c.2294C>T	c.(2293-2295)TCC>TTC	p.S765F	ZBTB41_uc009wyz.1_RNA	NM_194314	NP_919290	Q5SVQ8	ZBT41_HUMAN	zinc finger and BTB domain containing 41	765					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2						AACTGGCAAGGATACAAGTTT	0.383													96	27					0	0	0.870114	0	0
ZNF281	23528	broad.mit.edu	37	1	200376691	200376691	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:200376691G>A	uc001gve.2	-	2	2250	c.2143C>T	c.(2143-2145)CCT>TCT	p.P715S	ZNF281_uc001gvf.1_Missense_Mutation_p.P715S|ZNF281_uc001gvg.1_Missense_Mutation_p.P679S	NM_012482	NP_036614	Q9Y2X9	ZN281_HUMAN	zinc finger protein 281	715					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|breast(1)	2						CACTCCAAAGGAGACGTAGTG	0.433													62	11					0	0	0.870114	0	0
CYB5R1	51706	broad.mit.edu	37	1	202932811	202932811	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:202932811G>A	uc001gyt.2	-	7	675	c.604C>T	c.(604-606)CCT>TCT	p.P202S	CYB5R1_uc010pqe.1_RNA	NM_016243	NP_057327	Q9UHQ9	NB5R1_HUMAN	cytochrome b5 reductase 1	202	FAD (By similarity).				sterol biosynthetic process	integral to membrane	cytochrome-b5 reductase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(75;0.141)			GGATCTTCAGGGACTTTCAGG	0.517													16	11					0	0	0.592651	0	0
PPFIA4	8497	broad.mit.edu	37	1	203040888	203040888	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:203040888C>G	uc001gyz.2	+	15	2468	c.1875C>G	c.(1873-1875)GAC>GAG	p.D625E	PPFIA4_uc009xaj.2_Missense_Mutation_p.D1256E|PPFIA4_uc010pqf.1_Missense_Mutation_p.D838E|PPFIA4_uc001gza.2_Missense_Mutation_p.D616E|PPFIA4_uc001gzb.1_Missense_Mutation_p.D311E|PPFIA4_uc001gzc.1_Missense_Mutation_p.D167E	NM_015053	NP_055868	O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f	625					cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						AGCTGGATGACGTGAGTACCT	0.522													8	5					0	0	0.387290	0	0
CNTN2	6900	broad.mit.edu	37	1	205041148	205041148	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:205041148C>T	uc001hbr.2	+	20	2887	c.2618C>T	c.(2617-2619)GCC>GTC	p.A873V	CNTN2_uc001hbq.1_Missense_Mutation_p.A764V|CNTN2_uc001hbs.2_Missense_Mutation_p.A661V	NM_005076	NP_005067	Q02246	CNTN2_HUMAN	contactin 2 precursor	873	Fibronectin type-III 3.				axon guidance|clustering of voltage-gated potassium channels	anchored to membrane|juxtaparanode region of axon|myelin sheath|node of Ranvier|synapse part	identical protein binding			ovary(1)	1	all_cancers(21;0.144)|Breast(84;0.0437)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			GACACCAGTGCCCGAGTCAGC	0.647													35	11					0	0	0.840704	0	0
KCNH1	3756	broad.mit.edu	37	1	210857382	210857382	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:210857382G>A	uc001hib.2	-	11	2381	c.2211C>T	c.(2209-2211)GTC>GTT	p.V737V	KCNH1_uc001hic.2_Silent_p.V710V	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	737	Cytoplasmic (Potential).|Calmodulin-binding.				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		AGAGGCGCCGGACAGGGTGGT	0.577													25	7					0	0	0.740014	0	0
USH2A	7399	broad.mit.edu	37	1	216166467	216166467	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:216166467C>T	uc001hku.1	-	35	7087	c.6700G>A	c.(6700-6702)GCC>ACC	p.A2234T		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2234	Extracellular (Potential).|Fibronectin type-III 8.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TCAGTTAGGGCCTCACTGGCC	0.507										HNSCC(13;0.011)	OREG0014251	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	73	16					0	0	0.870114	0	0
GPATCH2	55105	broad.mit.edu	37	1	217665071	217665071	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:217665071G>A	uc001hlf.1	-	8	1324	c.1228C>T	c.(1228-1230)CGA>TGA	p.R410*	GPATCH2_uc009xdq.1_RNA	NM_018040	NP_060510	Q9NW75	GPTC2_HUMAN	G patch domain containing 2	410						intracellular	nucleic acid binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0397)|all cancers(67;0.0744)|GBM - Glioblastoma multiforme(131;0.0872)		CTTTCAGCTCGATTATCTCTC	0.313													50	23					0	0	0.870114	0	0
TLR5	7100	broad.mit.edu	37	1	223283825	223283825	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:223283825G>A	uc001hnv.1	-	4	2995	c.2549C>T	c.(2548-2550)CCG>CTG	p.P850L	TLR5_uc001hnw.1_Missense_Mutation_p.P850L	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	850	Cytoplasmic (Potential).		Missing (in 10% of the population; abolishes flagellin signaling; associated with resistance to SLEB1).		cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		AGTTTGCAACGGAATGTTATT	0.373													39	18					0	0	0.870114	0	0
TTC13	79573	broad.mit.edu	37	1	231044697	231044697	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:231044697G>A	uc001huf.3	-	21	2410	c.2379C>T	c.(2377-2379)CCC>CCT	p.P793P	TTC13_uc009xfi.2_Silent_p.P740P|TTC13_uc009xfj.2_RNA|TTC13_uc001hug.3_Silent_p.P739P|TTC13_uc009xfk.1_Silent_p.P682P	NM_024525	NP_078801	Q8NBP0	TTC13_HUMAN	tetratricopeptide repeat domain 13 isoform a	793							binding			ovary(1)|skin(1)	2	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)		COAD - Colon adenocarcinoma(196;0.243)		CCTTCCCTTTGGGAATTTTTC	0.383													125	25					0	0	0.870114	0	0
KCNK1	3775	broad.mit.edu	37	1	233807084	233807084	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:233807084G>A	uc010pxo.1	+	3	987	c.819G>A	c.(817-819)CTG>CTA	p.L273L	KCNK1_uc001hvw.2_RNA|KCNK1_uc001hvx.2_RNA	NM_002245	NP_002236	O00180	KCNK1_HUMAN	potassium channel, subfamily K, member 1	273	Cytoplasmic (Potential).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			central_nervous_system(1)	1		all_cancers(173;0.00217)|all_epithelial(177;0.121)|Prostate(94;0.122)|Acute lymphoblastic leukemia(190;0.175)			Ibutilide(DB00308)|Quinidine(DB00908)	TCCATGAGCTGAAAAAATTCA	0.448													37	11					0	0	0.812448	0	0
RYR2	6262	broad.mit.edu	37	1	237875104	237875104	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:237875104C>T	uc001hyl.1	+	71	10410	c.10290C>T	c.(10288-10290)TTC>TTT	p.F3430F	RYR2_uc010pxz.1_Silent_p.F385F	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3430					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			ATATGTCTTTCCTTATTACTG	0.308													10	3					0	0	0.435327	0	0
OR11L1	391189	broad.mit.edu	37	1	248004539	248004539	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:248004539G>A	uc001idn.1	-	1	660	c.660C>T	c.(658-660)TTC>TTT	p.F220F		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			AGGACACAATGAAAACATAGG	0.488													29	8					0	0	0.740014	0	0
OR11L1	391189	broad.mit.edu	37	1	248004808	248004808	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:248004808G>A	uc001idn.1	-	1	391	c.391C>T	c.(391-393)CGC>TGC	p.R131C		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			AAGGGGTAGCGGAGTGGGCTG	0.587													26	3					0	0	0.693898	0	0
OR2L1P	26247	broad.mit.edu	37	1	248153858	248153858	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr1:248153858G>A	uc001idv.1	+	1	290	c.46G>A	c.(46-48)GGG>AGG	p.G16R	OR2L13_uc001ids.2_Intron	NR_002145				RecName: Full=Olfactory receptor 2L5; AltName: Full=Olfactory receptor OR1-53;												0						CACTGGGTGTGGGATTCAGAG	0.428													50	14					0	0	0.870114	0	0
LARP4B	23185	broad.mit.edu	37	10	859098	859098	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr10:859098G>A	uc001ifs.1	-	17	2026	c.1985C>T	c.(1984-1986)CCT>CTT	p.P662L		NM_015155	NP_055970	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B	662							nucleotide binding|RNA binding			ovary(2)|central_nervous_system(1)	3						TGGGGAAGAAGGAGGCTCTTT	0.498													16	5					0	0	0.520397	0	0
ITIH2	3698	broad.mit.edu	37	10	7768995	7768995	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr10:7768995G>A	uc001ijs.2	+	10	1229	c.1067G>A	c.(1066-1068)CGA>CAA	p.R356Q		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	356	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						CAGAACATTCGAACTTGGAGA	0.403													30	11					0	0	0.796494	0	0
PHYH	5264	broad.mit.edu	37	10	13325836	13325836	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr10:13325836C>T	uc001imf.2	-	7	770	c.682G>A	c.(682-684)GGA>AGA	p.G228R	PHYH_uc001ime.2_Missense_Mutation_p.G128R|PHYH_uc001img.2_Missense_Mutation_p.G211R	NM_006214	NP_006205	O14832	PAHX_HUMAN	phytanoyl-CoA 2-hydroxylase isoform a precursor	228					fatty acid alpha-oxidation|nervous system development	peroxisomal matrix	electron carrier activity|L-ascorbic acid binding|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|phytanoyl-CoA dioxygenase activity|protein binding				0		Ovarian(717;0.0448)			Antihemophilic Factor(DB00025)|Vitamin C(DB00126)	TTGTTAACTCCCCCCTAGAAC	0.458													95	61					0	0	0.870114	0	0
C10orf71	118461	broad.mit.edu	37	10	50531758	50531758	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr10:50531758G>A	uc010qgp.1	+	3	1507	c.1168G>A	c.(1168-1170)GGG>AGG	p.G390R		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	390											0						TGGCAAAAAAGGGAAAGAAAG	0.473													22	9					0	0	0.608945	0	0
ANK3	288	broad.mit.edu	37	10	61829606	61829606	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr10:61829606G>A	uc001jky.2	-	37	11225	c.11033C>T	c.(11032-11034)CCT>CTT	p.P3678L	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3678					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTCCACTGTAGGTGTCTCTAC	0.542													21	5					0	0	0.608945	0	0
ANK3	288	broad.mit.edu	37	10	61830238	61830238	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr10:61830238G>A	uc001jky.2	-	37	10593	c.10401C>T	c.(10399-10401)ATC>ATT	p.I3467I	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3467					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CCTCCTCCTCGATAACTTCAA	0.458													31	17					0	0	0.827153	0	0
ANK3	288	broad.mit.edu	37	10	61834248	61834248	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr10:61834248C>T	uc001jky.2	-	37	6583	c.6391G>A	c.(6391-6393)GAA>AAA	p.E2131K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2131					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CTTCTTGTTTCAAAGCCACTG	0.423													17	16					0	0	0.592651	0	0
DNA2	1763	broad.mit.edu	37	10	70225555	70225555	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr10:70225555G>A	uc001jof.2	-	4	714	c.714C>T	c.(712-714)GCC>GCT	p.A238A	DNA2_uc001jog.1_Silent_p.A152A|DNA2_uc001joh.1_RNA	NM_001080449	NP_001073918	P51530	DNA2L_HUMAN	DNA replication helicase 2 homolog	152					base-excision repair|DNA replication, removal of RNA primer|mitochondrial DNA repair|mitochondrial DNA replication|positive regulation of DNA replication|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	mitochondrial nucleoid|nucleoplasm	5'-flap endonuclease activity|ATP binding|ATP-dependent DNA helicase activity|DNA binding|site-specific endodeoxyribonuclease activity, specific for altered base				0						TTTGGCGTGTGGCTGGATCAG	0.348													6	1					0	0	0.307466	0	0
DNMBP	23268	broad.mit.edu	37	10	101639994	101639994	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr10:101639994G>A	uc001kqj.2	-	16	4214	c.4122C>T	c.(4120-4122)TTC>TTT	p.F1374F	DNMBP_uc010qpl.1_Silent_p.F310F|DNMBP_uc001kqg.2_Silent_p.F662F|DNMBP_uc001kqh.2_Silent_p.F1006F	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	1374	Ser-rich.				intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		TCTGGCGTGGGAACCTGGGGG	0.607													29	15					0	0	0.779181	0	0
PAOX	196743	broad.mit.edu	37	10	135195147	135195147	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr10:135195147C>T	uc001lmv.2	+	3	932	c.852C>T	c.(850-852)ATC>ATT	p.I284I	PAOX_uc001lmw.2_RNA|PAOX_uc001lmx.2_Silent_p.I284I|PAOX_uc001lmy.2_Silent_p.I284I|PAOX_uc001lmz.2_RNA|PAOX_uc001lna.2_RNA|PAOX_uc001lnb.2_RNA|PAOX_uc001lnc.2_RNA	NM_152911	NP_690875	Q6QHF9	PAOX_HUMAN	polyamine oxidase isoform 1	422					polyamine biosynthetic process|xenobiotic metabolic process	peroxisomal matrix	polyamine oxidase activity				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		all cancers(32;4.39e-07)|OV - Ovarian serous cystadenocarcinoma(35;1.21e-06)|Epithelial(32;1.94e-06)		ACCATGTCATCGTCACCGTGC	0.617													31	15					0	0	0.804634	0	0
MUC2	4583	broad.mit.edu	37	11	1101046	1101046	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:1101046G>A	uc001lsx.1	+	44	14558	c.14531G>A	c.(14530-14532)GGA>GAA	p.G4844E		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4844	VWFC 1.					inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CTGGAGGGTGGAAGTGGCATC	0.602													15	7					0	0	0.500413	0	0
MUC5B	727897	broad.mit.edu	37	11	1274045	1274045	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:1274045G>A	uc009ycr.1	+	54	16144	c.16018G>A	c.(16018-16020)GAG>AAG	p.E5340K	MUC5B_uc001ltb.2_Missense_Mutation_p.E5021K	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	5018					cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CCAGGTGAATGAGACCTGGAC	0.647													8	5					0	0	0.361761	0	0
OR51D1	390038	broad.mit.edu	37	11	4661207	4661207	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:4661207C>T	uc010qyk.1	+	1	187	c.187C>T	c.(187-189)CGT>TGT	p.R63C		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	63	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCTCATCATTCGTGTGGAGAG	0.542													30	9					0	0	0.812448	0	0
OR51D1	390038	broad.mit.edu	37	11	4661869	4661869	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:4661869C>T	uc010qyk.1	+	1	849	c.849C>T	c.(847-849)CTC>CTT	p.L283L		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	283	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCACCTCCCTCCTCCATGTGG	0.532													54	35					0	0	0.870114	0	0
OR51T1	401665	broad.mit.edu	37	11	4903486	4903486	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:4903486C>T	uc010qyp.1	+	1	438	c.438C>T	c.(436-438)GCC>GCT	p.A146A		NM_001004759	NP_001004759	Q8NGJ9	O51T1_HUMAN	olfactory receptor, family 51, subfamily T,	119	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGCTGGTAGCCATGGCCTTTG	0.493													40	18					0	0	0.870114	0	0
OR2AG2	338755	broad.mit.edu	37	11	6789911	6789911	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:6789911G>A	uc001meq.1	-	1	278	c.278C>T	c.(277-279)TCC>TTC	p.S93F		NM_001004490	NP_001004490	A6NM03	O2AG2_HUMAN	olfactory receptor, family 2, subfamily AG,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.S93S(1)		skin(2)|ovary(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.15e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GCCTCCAAAGGAGATAGTGTT	0.537													36	10					0	0	0.812448	0	0
RBMXL2	27288	broad.mit.edu	37	11	7111075	7111075	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:7111075G>A	uc001mfc.2	+	1	911	c.724G>A	c.(724-726)GAT>AAT	p.D242N		NM_014469	NP_055284	O75526	HNRGT_HUMAN	testes-specific heterogenous nuclear	242	Arg/Gly/Pro-rich.					nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0				Epithelial(150;5.14e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CACCCACCGCGATTACGGCCA	0.657													13	5					0	0	0.520397	0	0
USH1C	10083	broad.mit.edu	37	11	17547943	17547943	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:17547943C>T	uc001mnf.2	-	8	734	c.625G>A	c.(625-627)GAG>AAG	p.E209K	USH1C_uc001mne.2_Missense_Mutation_p.E209K|USH1C_uc009yhb.2_Missense_Mutation_p.E209K|USH1C_uc001mng.2_RNA|USH1C_uc001mnd.2_Missense_Mutation_p.E173K	NM_005709	NP_005700	Q9Y6N9	USH1C_HUMAN	harmonin isoform a	209					equilibrioception|G2/M transition of mitotic cell cycle|photoreceptor cell maintenance|sensory perception of sound	apical part of cell|cytoplasm|stereocilium	protein binding			ovary(1)	1						ACCTTCTTCTCCTTGTTTTCC	0.612													11	7					0	0	0.435327	0	0
SLC6A5	9152	broad.mit.edu	37	11	20636271	20636271	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:20636271G>A	uc001mqd.2	+	6	1305	c.1032G>A	c.(1030-1032)TCG>TCA	p.S344S	SLC6A5_uc009yic.2_Silent_p.S109S	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	344	Extracellular (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	TCAAGAACTCGACTTTCTGCA	0.408													55	31					0	0	0.870114	0	0
CCDC73	493860	broad.mit.edu	37	11	32697157	32697157	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:32697157G>A	uc001mtv.2	-	9	643	c.599C>T	c.(598-600)TCA>TTA	p.S200L	CCDC73_uc001mtw.1_Missense_Mutation_p.S200L	NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	200	Potential.									ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					ATTTAAAGCTGAAAGTCTTTT	0.264													4	2					0	0	0.184627	0	0
OR5T2	219464	broad.mit.edu	37	11	56000318	56000318	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:56000318A>C	uc010rjc.1	-	1	344	c.344T>G	c.(343-345)GTT>GGT	p.V115G		NM_001004746	NP_001004746	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T,	115	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TGGGGTAATAACTGAGGAATA	0.388													23	14					0	0	0.667858	0	0
MS4A14	84689	broad.mit.edu	37	11	60164131	60164131	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:60164131C>T	uc001npj.2	+	1	645	c.80C>T	c.(79-81)CCC>CTC	p.P27L	MS4A14_uc001npi.2_Intron|MS4A14_uc001npn.2_5'UTR|MS4A14_uc001npk.2_Missense_Mutation_p.P27L|MS4A14_uc001npl.2_5'UTR|MS4A14_uc001npm.2_5'UTR	NM_032597	NP_115986	Q96JA4	M4A14_HUMAN	membrane-spanning 4-domains, subfamily A, member	27						integral to membrane	receptor activity			breast(1)	1						ACTGCATTTCCCTACAGACCT	0.468													19	3					0	0	0.608945	0	0
DAGLA	747	broad.mit.edu	37	11	61503050	61503050	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:61503050C>T	uc001nsa.2	+	11	1257	c.1146C>T	c.(1144-1146)TTC>TTT	p.F382F		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	382	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		AAACGCCCTTCTACGTGGCGG	0.637													22	4					0	0	0.693898	0	0
KCNK7	10089	broad.mit.edu	37	11	65363008	65363008	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:65363008G>A	uc001oes.2	-	1	460	c.236C>T	c.(235-237)TCC>TTC	p.S79F	KCNK7_uc001oeq.2_Missense_Mutation_p.S79F|KCNK7_uc001oer.2_Missense_Mutation_p.S79F|KCNK7_uc001oeu.2_Missense_Mutation_p.S79F	NM_033347	NP_203133	Q9Y2U2	KCNK7_HUMAN	potassium channel, subfamily K, member 7 isoform	79						integral to membrane	potassium channel activity|voltage-gated ion channel activity				0						GCCCAGGGTGGAGACCCCATG	0.667													9	2					0	0	0.387290	0	0
SPTBN2	6712	broad.mit.edu	37	11	66458874	66458874	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:66458874G>A	uc001ojd.2	-	26	5518	c.5446C>T	c.(5446-5448)CGG>TGG	p.R1816W		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	1816	Spectrin 15.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						TGCTGCACCCGCGCCAGGGCT	0.692													17	7					0	0	0.539581	0	0
CLPB	81570	broad.mit.edu	37	11	72004437	72004437	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:72004437G>C	uc001osj.2	-	17	2148	c.2098C>G	c.(2098-2100)CCT>GCT	p.P700A	CLPB_uc010rqx.1_Missense_Mutation_p.P655A|CLPB_uc010rqy.1_Missense_Mutation_p.P641A|CLPB_uc001osk.2_Missense_Mutation_p.P670A|CLPB_uc009ytg.2_RNA|CLPB_uc010rqz.1_Missense_Mutation_p.P499A|CLPB_uc001osi.2_Missense_Mutation_p.P308A	NM_030813	NP_110440	Q9H078	CLPB_HUMAN	caseinolytic peptidase B	700					cellular response to heat		ATP binding|nucleoside-triphosphatase activity|protein binding			pancreas(1)	1						ACCTTCTCAGGGTGCAGTGGT	0.592													28	16					0	0	0.740014	0	0
FAT3	120114	broad.mit.edu	37	11	92085966	92085966	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:92085966G>A	uc001pdj.3	+	1	705	c.688G>A	c.(688-690)GAA>AAA	p.E230K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	230	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GTATGATCTGGAAATTTTGGC	0.393										TCGA Ovarian(4;0.039)			35	65					0	0	0.819951	0	0
MMP12	4321	broad.mit.edu	37	11	102738082	102738082	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:102738082G>A	uc001phk.2	-	7	875	c.830C>T	c.(829-831)TCA>TTA	p.S277L		NM_002426	NP_002417	P39900	MMP12_HUMAN	matrix metalloproteinase 12 preproprotein	277					positive regulation of epithelial cell proliferation involved in wound healing|proteolysis|wound healing, spreading of epidermal cells	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.014)	Acetohydroxamic Acid(DB00551)	AGCTGGTTCTGAATTGTCAGG	0.398													10	2					0	0	0.361761	0	0
CUL5	8065	broad.mit.edu	37	11	107920793	107920793	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:107920793G>A	uc001pjv.2	+	4	1078	c.411G>A	c.(409-411)AAG>AAA	p.K137K	CUL5_uc001pju.2_RNA	NM_003478	NP_003469	Q93034	CUL5_HUMAN	Vasopressin-activated calcium-mobilizing	137					cell cycle arrest|cell proliferation|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process|viral reproduction	cullin-RING ubiquitin ligase complex|cytosol	calcium channel activity|receptor activity|ubiquitin protein ligase binding			ovary(1)	1		all_cancers(61;7.09e-10)|all_epithelial(67;2.97e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|Melanoma(852;4.48e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		BRCA - Breast invasive adenocarcinoma(274;3.58e-05)|Epithelial(105;4.68e-05)|all cancers(92;0.00122)|OV - Ovarian serous cystadenocarcinoma(223;0.217)		TTGTTCGAAAGGTAAGACTAT	0.313													25	8					0	0	0.779181	0	0
IL10RA	3587	broad.mit.edu	37	11	117869501	117869501	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:117869501C>T	uc001prv.2	+	7	959	c.882C>T	c.(880-882)CAC>CAT	p.H294H	IL10RA_uc010rxl.1_Silent_p.H274H|IL10RA_uc010rxm.1_Silent_p.H274H|IL10RA_uc010rxn.1_Silent_p.H145H|IL10RA_uc001prw.2_Silent_p.H145H	NM_001558	NP_001549	Q13651	I10R1_HUMAN	interleukin 10 receptor, alpha precursor	294	Cytoplasmic (Potential).					integral to membrane|plasma membrane	interleukin-10 receptor activity			ovary(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.07e-05)|Epithelial(105;0.00108)		ACACCATCCACCCGCTTGATG	0.582													25	11					0	0	0.706142	0	0
GRAMD1B	57476	broad.mit.edu	37	11	123448281	123448281	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:123448281C>T	uc001pyx.2	+	2	559	c.230C>T	c.(229-231)TCC>TTC	p.S77F	GRAMD1B_uc001pyw.2_Missense_Mutation_p.S77F|GRAMD1B_uc010rzw.1_Missense_Mutation_p.S37F|GRAMD1B_uc010rzx.1_Missense_Mutation_p.S37F|GRAMD1B_uc009zbe.1_Missense_Mutation_p.S73F	NM_020716	NP_065767	Q3KR37	GRM1B_HUMAN	GRAM domain containing 1B	77						integral to membrane				ovary(1)	1		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.32e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0394)		GGCAAGAATTCCAAGGTGAGC	0.662											OREG0021454	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	1					0	0	0.150653	0	0
TMEM225	338661	broad.mit.edu	37	11	123753896	123753896	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:123753896C>T	uc001pzi.2	-	4	835	c.627G>A	c.(625-627)GTG>GTA	p.V209V		NM_001013743	NP_001013765	Q6GV28	TM225_HUMAN	transmembrane protein 225	209						integral to membrane				upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	3						TTAGGGAATTCACAGTGTGTG	0.398													30	22					0	0	0.769981	0	0
OR10G4	390264	broad.mit.edu	37	11	123886941	123886941	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr11:123886941C>T	uc010sac.1	+	1	660	c.660C>T	c.(658-660)ATC>ATT	p.I220I		NM_001004462	NP_001004462	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		ATGTGTCCATCGTCTGTTCCA	0.542													48	14					0	0	0.870114	0	0
WNK1	65125	broad.mit.edu	37	12	994397	994397	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:994397C>T	uc001qio.3	+	19	4934	c.4427C>T	c.(4426-4428)TCT>TTT	p.S1476F	WNK1_uc001qip.3_Missense_Mutation_p.S1229F|WNK1_uc001qir.3_Missense_Mutation_p.S649F	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	1476					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			GCTGTAGTATCTCAGCAGGCA	0.512													24	44					0	0	0.693898	0	0
IFFO1	25900	broad.mit.edu	37	12	6665123	6665123	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:6665123C>T	uc001qpd.1	-	1	107	c.73G>A	c.(73-75)GAC>AAC	p.D25N	IFFO1_uc001qpe.1_RNA|IFFO1_uc010sfe.1_Missense_Mutation_p.D25N|IFFO1_uc001qpf.1_Missense_Mutation_p.D25N|IFFO1_uc001qpc.1_Missense_Mutation_p.D25N	NM_080730	NP_542768	Q0D2I5	IFFO1_HUMAN	intermediate filament family orphan isoform 2	25						intermediate filament					0						CCCAGTGAGTCCCCCAGTGGC	0.622													5	4					0	0	0.217242	0	0
CLSTN3	9746	broad.mit.edu	37	12	7289520	7289520	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:7289520C>T	uc001qsr.2	+	7	1302	c.1024C>T	c.(1024-1026)CTG>TTG	p.L342L	CLSTN3_uc001qss.2_Silent_p.L354L	NM_014718	NP_055533	Q9BQT9	CSTN3_HUMAN	calsyntenin 3 precursor	342	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			large_intestine(1)	1						GGACAGCAGCCTGATCTACTG	0.642													49	57					0	0	0.870114	0	0
ACSM4	341392	broad.mit.edu	37	12	7480886	7480886	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:7480886G>A	uc001qsx.1	+	13	1660	c.1660G>A	c.(1660-1662)GAA>AAA	p.E554K		NM_001080454	NP_001073923	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	554					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding				0						CAATTAGGTGGAATTTGTTCA	0.398													3	2					0	0	0.115264	0	0
CD163	9332	broad.mit.edu	37	12	7639227	7639227	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:7639227C>T	uc001qsz.3	-	10	2454	c.2326G>A	c.(2326-2328)GAA>AAA	p.E776K	CD163_uc001qta.3_Missense_Mutation_p.E776K|CD163_uc009zfw.2_Missense_Mutation_p.E809K	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	776	SRCR 7.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						CCTGTTCCTTCCCCAAAATGA	0.537													10	244					0	0	0.457914	0	0
NECAP1	25977	broad.mit.edu	37	12	8245546	8245546	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:8245546C>T	uc001qtx.2	+	6	649	c.571C>T	c.(571-573)CCA>TCA	p.P191S	NECAP1_uc001qty.2_Missense_Mutation_p.P49S	NM_015509	NP_056324	Q8NC96	NECP1_HUMAN	NECAP endocytosis associated 1	191					endocytosis|protein transport	clathrin coated vesicle membrane|plasma membrane				ovary(1)	1				Kidney(36;0.0915)		CCCACCCCCGCCAGGAGGCAA	0.512													121	152					0	0	0.870114	0	0
A2M	2	broad.mit.edu	37	12	9262479	9262479	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:9262479G>A	uc001qvk.1	-	6	770	c.657C>T	c.(655-657)TTC>TTT	p.F219F	A2M_uc009zgk.1_Silent_p.F69F	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	219					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	CCTCCACGGTGAAAGGGTGCT	0.428													52	61					0	0	0.870114	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18435524	18435524	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:18435524G>A	uc001rdt.2	+	2	625	c.509G>A	c.(508-510)GGA>GAA	p.G170E	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.G170E|PIK3C2G_uc010sic.1_5'UTR	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	170					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				TACCATATAGGATTTGAAAGT	0.338													15	43					0	0	0.520397	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18715752	18715752	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:18715752G>A	uc001rdt.2	+	26	3699	c.3583G>A	c.(3583-3585)GAA>AAA	p.E1195K	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.E1236K|PIK3C2G_uc010sic.1_Missense_Mutation_p.E1014K	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1195					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				TTTTCCTCAGGAATCCTGTTT	0.403													3	1					0	0	0.115264	0	0
PLCZ1	89869	broad.mit.edu	37	12	18854670	18854670	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:18854670C>T	uc010sid.1	-	8	1096	c.905G>A	c.(904-906)GGA>GAA	p.G302E	PLCZ1_uc001rdv.3_Missense_Mutation_p.G198E|PLCZ1_uc001rdw.3_Missense_Mutation_p.G43E|PLCZ1_uc001rdu.1_Missense_Mutation_p.G43E|PLCZ1_uc009zil.1_RNA	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	302					intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					CTTTAAGGTTCCTATTTTCTT	0.303													4	6					0	0	0.248553	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891723	18891723	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:18891723G>A	uc001rdy.2	+	1	679	c.521G>A	c.(520-522)TGG>TAG	p.W174*	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	174					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				AAATCTAAATGGATTTTCCAA	0.383													18	47					0	0	0.592651	0	0
PDE3A	5139	broad.mit.edu	37	12	20786684	20786684	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:20786684G>A	uc001reh.1	+	7	1840	c.1818G>A	c.(1816-1818)GGG>GGA	p.G606G		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	606					lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	AGAGAAGTGGGGTAGCCACTC	0.433													15	20					0	0	0.592651	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21036398	21036398	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:21036398G>A	uc001rek.2	+	12	1670	c.1544G>A	c.(1543-1545)AGA>AAA	p.R515K	SLCO1B3_uc001rel.2_Missense_Mutation_p.R515K|SLCO1B3_uc010sil.1_Missense_Mutation_p.R515K|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.R340K	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	515	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					CTCCAGAACAGAAATTACTCA	0.333													30	33					0	0	0.804634	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21457496	21457496	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:21457496C>T	uc001rer.2	-	5	705	c.454G>A	c.(454-456)GAA>AAA	p.E152K	SLCO1A2_uc001res.2_Missense_Mutation_p.E152K|SLCO1A2_uc010siq.1_Missense_Mutation_p.E20K|SLCO1A2_uc010sio.1_Missense_Mutation_p.E20K|SLCO1A2_uc010sip.1_Missense_Mutation_p.E20K|SLCO1A2_uc001ret.2_Missense_Mutation_p.E150K|SLCO1A2_uc001reu.2_Missense_Mutation_p.E132K	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	152	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						GATTTAACTTCCTTTGTACAC	0.358													14	49					0	0	0.575678	0	0
CNTN1	1272	broad.mit.edu	37	12	41421717	41421717	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:41421717C>T	uc001rmm.1	+	22	2882	c.2769C>T	c.(2767-2769)ATC>ATT	p.I923I	CNTN1_uc001rmn.1_Silent_p.I912I	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	923	Fibronectin type-III 4.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				GCTATATAATCACCTGGGATC	0.388													20	69					0	0	0.706142	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43944829	43944829	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:43944829C>T	uc010skx.1	-	2	336	c.336G>A	c.(334-336)CCG>CCA	p.P112P		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	112						proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		CCCCGCGCTCCGGGGTTCCCA	0.652													9	12					0	0	0.387290	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45458398	45458398	+	RNA	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:45458398C>T	uc001rol.2	-	1		c.797G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						TACCTGTTTTCCTTTGGCTCC	0.522													8	15					0	0	0.387290	0	0
FAM113B	91523	broad.mit.edu	37	12	47629014	47629014	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:47629014C>T	uc001rpn.2	+	4	899	c.168C>T	c.(166-168)TTC>TTT	p.F56F	FAM113B_uc010slj.1_Intron|FAM113B_uc001rpq.2_Silent_p.F56F	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	56							hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					AGCTGAACTTCGAACAAGATG	0.602													13	26					0	0	0.435327	0	0
TROAP	10024	broad.mit.edu	37	12	49717459	49717459	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:49717459C>T	uc001rtx.3	+	2	235	c.68C>T	c.(67-69)CCG>CTG	p.P23L	TROAP_uc001rtv.2_Missense_Mutation_p.P23L|TROAP_uc001rtw.3_Missense_Mutation_p.P23L|TROAP_uc009zlh.2_Missense_Mutation_p.P23L|TROAP_uc001rty.2_5'Flank	NM_005480	NP_005471	Q12815	TROAP_HUMAN	tastin isoform 1	23					cell adhesion	cytoplasm				ovary(1)	1						AGCAAGATTCCGGTACGCTCT	0.582													78	103					0	0	0.870114	0	0
DAZAP2	9802	broad.mit.edu	37	12	51634702	51634702	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:51634702C>T	uc010snd.1	+	3	364	c.180C>T	c.(178-180)ACC>ACT	p.T60T	DAZAP2_uc001ryb.2_Silent_p.T60T|DAZAP2_uc010snc.1_Intron|DAZAP2_uc010sne.1_Intron|DAZAP2_uc010snf.1_Silent_p.T60T	NM_001136266	NP_001129738	Q15038	DAZP2_HUMAN	DAZ associated protein 2 isoform c	60	Pro-rich.						WW domain binding				0						CAGTCCCCACCATGTCAGCCG	0.512													25	67					0	0	0.729181	0	0
FIGNL2	401720	broad.mit.edu	37	12	52215926	52215926	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:52215926C>T	uc001rzc.2	-	1	283	c.272G>A	c.(271-273)GGC>GAC	p.G91D		NM_001013690	NP_001013712	A6NMB9	FIGL2_HUMAN	fidgetin-like 2	91							ATP binding|nucleoside-triphosphatase activity				0				BRCA - Breast invasive adenocarcinoma(357;0.135)		CCCTTTGGCGCCGTTGAGGAA	0.657													4	4					0	0	0.184627	0	0
KRT6C	286887	broad.mit.edu	37	12	52867474	52867474	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:52867474C>T	uc001sal.3	-	1	96	c.48G>A	c.(46-48)CGG>CGA	p.R16R		NM_173086	NP_775109	P48668	K2C6C_HUMAN	keratin 6C	16	Head.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0828)		CACTGAAACCCCGGCGGCTGC	0.667													7	22					0	0	0.307466	0	0
KRT4	3851	broad.mit.edu	37	12	53207481	53207481	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:53207481G>A	uc001saz.2	-	1	855	c.584C>T	c.(583-585)CCC>CTC	p.P195L		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	121						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						CACGTGGAGGGGGGTGAGCAA	0.582													40	40					0	0	0.864702	0	0
ESPL1	9700	broad.mit.edu	37	12	53683351	53683351	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:53683351C>T	uc001sck.2	+	22	5177	c.5086C>T	c.(5086-5088)CAG>TAG	p.Q1696*	ESPL1_uc001scj.2_Nonsense_Mutation_p.Q1371*	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	1696					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						GGAGAGTTTCCAGGAGCGCCT	0.602													17	22					0	0	0.654019	0	0
AMHR2	269	broad.mit.edu	37	12	53823694	53823694	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:53823694G>A	uc001scx.1	+	9	1298	c.1220G>A	c.(1219-1221)CGA>CAA	p.R407Q	AMHR2_uc009zmy.1_Missense_Mutation_p.R407Q	NM_020547	NP_065434	Q16671	AMHR2_HUMAN	anti-Mullerian hormone receptor, type II isoform	407	Cytoplasmic (Potential).|Protein kinase.				Mullerian duct regression		ATP binding|hormone binding|metal ion binding			ovary(1)|skin(1)	2					Adenosine triphosphate(DB00171)	GCCCTCCGACGAGCTGATATT	0.582									Persistant_Mullerian_Duct_Syndrome_(type_I_and_II)				25	31					0	0	0.681144	0	0
PDE1B	5153	broad.mit.edu	37	12	54943752	54943752	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:54943752G>A	uc001sgd.1	+	2	262	c.96G>A	c.(94-96)TGG>TGA	p.W32*	PDE1B_uc010soz.1_5'UTR|PDE1B_uc010spa.1_5'Flank	NM_000924	NP_000915	Q01064	PDE1B_HUMAN	phosphodiesterase 1B isoform 1	32	Calmodulin-binding (Potential).				activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						AGAAGATGTGGATTAAGCTTC	0.632													20	21					0	0	0.608945	0	0
OR6C74	254783	broad.mit.edu	37	12	55641256	55641256	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:55641256G>A	uc010spg.1	+	1	185	c.185G>A	c.(184-186)CGA>CAA	p.R62Q		NM_001005490	NP_001005490	A6NCV1	O6C74_HUMAN	olfactory receptor, family 6, subfamily C,	62	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.R62Q(1)		central_nervous_system(1)	1						TTCTTCCTCCGAAATTTCTCA	0.383													54	70					0	0	0.870114	0	0
OR6C6	283365	broad.mit.edu	37	12	55688524	55688524	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:55688524C>T	uc010sph.1	-	1	493	c.493G>A	c.(493-495)GAT>AAT	p.D165N		NM_001005493	NP_001005493	A6NF89	OR6C6_HUMAN	olfactory receptor, family 6, subfamily C,	165	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|skin(1)	2						GCACAAAAATCCAGCTTGAGT	0.403													28	38					0	0	0.769981	0	0
OR6C3	254786	broad.mit.edu	37	12	55725861	55725861	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:55725861C>T	uc010spj.1	+	1	377	c.377C>T	c.(376-378)CCC>CTC	p.P126L		NM_054104	NP_473445	Q9NZP0	OR6C3_HUMAN	olfactory receptor, family 6, subfamily C,	126	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ATCTGCAAGCCCCTTCATTAC	0.453													24	73					0	0	0.717897	0	0
OR6C4	341418	broad.mit.edu	37	12	55945169	55945169	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:55945169C>T	uc010spp.1	+	1	159	c.159C>T	c.(157-159)CTC>CTT	p.L53L		NM_001005494	NP_001005494	Q8NGE1	OR6C4_HUMAN	olfactory receptor, family 6, subfamily C,	53	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACCCCCACCTCCAGACCCCCA	0.418													55	193					0	0	0.870114	0	0
CD63	967	broad.mit.edu	37	12	56120749	56120749	+	Splice_Site	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:56120749C>T	uc001shm.2	-	3	352	c.256_splice	c.e3-1	p.F86_splice	CD63_uc009znz.2_Splice_Site_p.F63_splice|CD63_uc001shn.2_Splice_Site_p.F86_splice|CD63_uc001sho.2_Splice_Site_p.F86_splice|CD63_uc001shp.2_Splice_Site_p.F86_splice	NM_001780	NP_001771	P08962	CD63_HUMAN	CD63 antigen isoform A						platelet activation|platelet degranulation	integral to plasma membrane|late endosome membrane|lysosomal membrane|platelet dense granule membrane					0						AGATGGCAAACTGCAGGAGCA	0.512													66	56					0	0	0.870114	0	0
BAZ2A	11176	broad.mit.edu	37	12	57007849	57007849	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:57007849G>A	uc001slq.1	-	4	1004	c.810C>T	c.(808-810)GTC>GTT	p.V270V	BAZ2A_uc001slp.1_Silent_p.V268V|BAZ2A_uc009zow.1_Silent_p.V238V	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A	270					chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|zinc ion binding				0						TGGGGTCAGGGACCAGGACTG	0.488													27	73					0	0	0.750413	0	0
BAZ2A	11176	broad.mit.edu	37	12	57011238	57011238	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:57011238G>A	uc001slq.1	-	2	277	c.83C>T	c.(82-84)TCC>TTC	p.S28F	BAZ2A_uc001slp.1_Missense_Mutation_p.S26F|BAZ2A_uc010sqr.1_Missense_Mutation_p.S28F|BAZ2A_uc009zow.1_Missense_Mutation_p.S26F	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A	28					chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|zinc ion binding				0						CTCCCCTGAGGAAGGAGAGGG	0.577													7	9					0	0	0.248553	0	0
TMEM5	10329	broad.mit.edu	37	12	64174929	64174929	+	Silent	SNP	A	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:64174929A>T	uc001srq.1	+	2	404	c.300A>T	c.(298-300)GTA>GTT	p.V100V	TMEM5_uc001srr.1_5'UTR|TMEM5_uc001srs.1_5'UTR	NM_014254	NP_055069	Q9Y2B1	TMEM5_HUMAN	transmembrane protein 5	100	Extracellular (Potential).					integral to plasma membrane					0		Myeloproliferative disorder(1001;0.0255)	BRCA - Breast invasive adenocarcinoma(9;0.0985)	GBM - Glioblastoma multiforme(28;9e-08)|BRCA - Breast invasive adenocarcinoma(357;0.000175)		ATCTCAGTGTACAAATCTGGG	0.294													40	54					0	0	0.870114	0	0
KERA	11081	broad.mit.edu	37	12	91449844	91449844	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:91449844C>T	uc001tbl.2	-	2	834	c.215G>A	c.(214-216)AGA>AAA	p.R72K		NM_007035	NP_008966	O60938	KERA_HUMAN	keratocan precursor	72	LRR 1.				response to stimulus|visual perception	proteinaceous extracellular matrix				skin(1)	1						ATACCAAATTCTTGAAGGAAT	0.383													11	29					0	0	0.411799	0	0
ANKS1B	56899	broad.mit.edu	37	12	99793546	99793546	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:99793546C>T	uc001tge.1	-	12	2036	c.1619G>A	c.(1618-1620)CGA>CAA	p.R540Q	ANKS1B_uc001tgf.1_Missense_Mutation_p.R120Q|ANKS1B_uc009ztt.1_Missense_Mutation_p.R506Q	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	540						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		GTGATTCATTCGGTGAAAATC	0.418													12	43					0	0	0.539581	0	0
ACACB	32	broad.mit.edu	37	12	109692078	109692078	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:109692078A>T	uc001tob.2	+	44	6224	c.6105A>T	c.(6103-6105)GAA>GAT	p.E2035D	ACACB_uc001toc.2_Missense_Mutation_p.E2035D|ACACB_uc010sxl.1_RNA|ACACB_uc001tod.2_RNA|ACACB_uc010sxm.1_Missense_Mutation_p.E701D	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	2035	Carboxyltransferase.				acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	GAGAAATTGAATTCCTCCCAT	0.502													37	93					0	0	0.840704	0	0
MYO1H	283446	broad.mit.edu	37	12	109874332	109874332	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:109874332G>A	uc010sxn.1	+	21	2132	c.2132G>A	c.(2131-2133)AGG>AAG	p.R711K		NM_001101421	NP_001094891	Q8N1T3	MYO1H_HUMAN	myosin 1H	Error:Variant_position_missing_in_B4DNW6_after_alignment						myosin complex	motor activity				0						TGCCTAGGAAGGAGAGAATAC	0.408													5	9					0	0	0.248553	0	0
CUX2	23316	broad.mit.edu	37	12	111785825	111785825	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:111785825C>T	uc001tsa.1	+	22	4310	c.4157C>T	c.(4156-4158)TCC>TTC	p.S1386F		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1386	Pro-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GCCTCAGAGTCCTCACGCTGC	0.612													14	40					0	0	0.500413	0	0
OAS1	4938	broad.mit.edu	37	12	113357260	113357260	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:113357260G>A	uc001tud.2	+	6	1211	c.1105G>A	c.(1105-1107)GGA>AGA	p.G369R	OAS1_uc001tuc.2_Intron|OAS1_uc009zwf.2_Intron	NM_016816	NP_058132	P00973	OAS1_HUMAN	2',5'-oligoadenylate synthetase 1 isoform 1	369					interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(2)	2						TGGTTACATTGGAACACATGA	0.512													24	60					0	0	0.740014	0	0
NOS1	4842	broad.mit.edu	37	12	117768779	117768779	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:117768779C>T	uc001twm.1	-	2	782	c.96G>A	c.(94-96)GTG>GTA	p.V32V		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	32	Interaction with NOSIP (By similarity).|PDZ.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CCCGCTCCTTCACCAGAAATC	0.552													16	25					0	0	0.539581	0	0
KSR2	283455	broad.mit.edu	37	12	117962701	117962701	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:117962701G>A	uc001two.2	-	14	2143	c.2088C>T	c.(2086-2088)TTC>TTT	p.F696F		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	725	Protein kinase.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AGGCACCCATGAAAAGCACCA	0.527													8	16					0	0	0.335167	0	0
CCDC60	160777	broad.mit.edu	37	12	119957972	119957972	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:119957972G>A	uc001txe.2	+	9	1480	c.1015G>A	c.(1015-1017)GAA>AAA	p.E339K	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	339										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		TGCTTATAAGGAAATGCAGAC	0.483													29	82					0	0	0.760397	0	0
MPHOSPH9	10198	broad.mit.edu	37	12	123646767	123646767	+	Splice_Site	SNP	T	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:123646767T>A	uc001uel.2	-	17	2681	c.2574_splice	c.e17-1	p.R858_splice	MPHOSPH9_uc010tal.1_Splice_Site_p.R312_splice|MPHOSPH9_uc010tam.1_Intron|MPHOSPH9_uc001uem.2_Splice_Site_p.R312_splice	NM_022782	NP_073619	Q99550	MPP9_HUMAN	M-phase phosphoprotein 9						M phase of mitotic cell cycle	centriole|Golgi membrane					0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000182)|Epithelial(86;0.00046)|BRCA - Breast invasive adenocarcinoma(302;0.169)		ATATCAAATCTATTGAATGAA	0.353													16	33					0	0	0.557998	0	0
DNAH10	196385	broad.mit.edu	37	12	124330279	124330279	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:124330279G>A	uc001uft.3	+	30	5164	c.5139G>A	c.(5137-5139)AGG>AGA	p.R1713R		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1713	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		ACTATGGCAGGAAAATGCACC	0.517													8	15					0	0	0.307466	0	0
TMEM132B	114795	broad.mit.edu	37	12	126138577	126138577	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:126138577C>T	uc001uhe.1	+	9	2566	c.2558C>T	c.(2557-2559)CCC>CTC	p.P853L	TMEM132B_uc001uhf.1_Missense_Mutation_p.P365L	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	853	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		CCCCAGTCTCCCATGGAAGGG	0.522													11	14					0	0	0.435327	0	0
TMEM132D	121256	broad.mit.edu	37	12	130184678	130184678	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:130184678G>A	uc009zyl.1	-	2	973	c.645C>T	c.(643-645)TCC>TCT	p.S215S		NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	215	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		GCTGGTCCACGGACTTCCTCC	0.692													11	31					0	0	0.435327	0	0
TUBA3C	7278	broad.mit.edu	37	13	19752419	19752419	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr13:19752419G>A	uc009zzj.2	-	3	391	c.342C>T	c.(340-342)ATC>ATT	p.I114I		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	114					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		CCAGGTCGACGATCTCCTTGC	0.537													11	89					0	0	0.479597	0	0
RXFP2	122042	broad.mit.edu	37	13	32376374	32376374	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr13:32376374G>A	uc001utt.2	+	18	2168	c.2097G>A	c.(2095-2097)AAG>AAA	p.K699K	RXFP2_uc010aba.2_Silent_p.K658K	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	699	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		ACTTTTTTAAGGACAAGTTGA	0.353													19	14					0	0	0.557998	0	0
FREM2	341640	broad.mit.edu	37	13	39433567	39433567	+	Silent	SNP	G	A	A	rs115054860	by1000genomes	TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr13:39433567G>A	uc001uwv.2	+	14	7668	c.7359G>A	c.(7357-7359)GTG>GTA	p.V2453V	FREM2_uc001uww.2_Silent_p.V539V	NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	2453	Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		TGAGAGAAGTGGACTTCGACA	0.537													5	61					0	0	0.278610	0	0
MYCBP2	23077	broad.mit.edu	37	13	77718653	77718653	+	Silent	SNP	A	G	G			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr13:77718653A>G	uc001vkf.2	-	50	7207	c.7116T>C	c.(7114-7116)ACT>ACC	p.T2372T	MYCBP2_uc010aev.2_Silent_p.T1776T	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	2372	Filamin.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		TTGCACAATAAGTCCCATCAT	0.378													6	146					0	0	0.307466	0	0
SLITRK6	84189	broad.mit.edu	37	13	86368801	86368801	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr13:86368801G>A	uc001vll.1	-	2	2302	c.1843C>T	c.(1843-1845)CTG>TTG	p.L615L	SLITRK6_uc010afe.1_Intron	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	615	Helical; (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		AACATAATCAGAAGTCCCAAT	0.413													44	23					0	0	0.870114	0	0
DZIP1	22873	broad.mit.edu	37	13	96239829	96239829	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr13:96239829C>T	uc001vmk.2	-	20	3034	c.2182G>A	c.(2182-2184)GAA>AAA	p.E728K	DZIP1_uc001vmi.2_5'UTR|DZIP1_uc001vmj.2_Missense_Mutation_p.E204K|DZIP1_uc001vml.2_Missense_Mutation_p.E709K	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	728					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			TCCTCGATTTCGCTTCCCTCG	0.547													88	30					0	0	0.870114	0	0
UGGT2	55757	broad.mit.edu	37	13	96665626	96665626	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr13:96665626G>A	uc001vmt.2	-	5	765	c.595C>T	c.(595-597)CAC>TAC	p.H199Y	UGGT2_uc010afo.2_RNA|UGGT2_uc001vmv.2_Missense_Mutation_p.H199Y|UGGT2_uc010afp.2_Missense_Mutation_p.H199Y	NM_020121	NP_064506	Q9NYU1	UGGG2_HUMAN	UDP-glucose ceramide glucosyltransferase-like 2	199					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity			ovary(2)|central_nervous_system(1)	3						AATACTTTGTGAAATGCACTA	0.353													27	11					0	0	0.779181	0	0
FGF14	2259	broad.mit.edu	37	13	102379096	102379096	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr13:102379096G>A	uc001vpe.2	-	4	473	c.473C>T	c.(472-474)TCA>TTA	p.S158L	FGF14_uc001vpf.2_Missense_Mutation_p.S163L	NM_004115	NP_004106	Q92915	FGF14_HUMAN	fibroblast growth factor 14 isoform 1A	158					cell death|cell-cell signaling|JNK cascade|nervous system development|signal transduction	nucleus	growth factor activity|heparin binding			ovary(2)|lung(1)|large_intestine(1)	4	all_neural(89;0.0239)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					CAACATGGATGAGTAGATTAC	0.358													12	11					0	0	0.435327	0	0
SLC10A2	6555	broad.mit.edu	37	13	103710711	103710711	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr13:103710711G>A	uc001vpy.3	-	2	996	c.399C>T	c.(397-399)TCC>TCT	p.S133S		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	133	Helical; (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					CAAGCAGTGTGGAGCATGTGG	0.443													19	9					0	0	0.624587	0	0
COL4A1	1282	broad.mit.edu	37	13	110813568	110813568	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr13:110813568C>T	uc001vqw.3	-	49	4733	c.4611G>A	c.(4609-4611)ACG>ACA	p.T1537T	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1537	Collagen IV NC1.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			TGTTTTCCCCCGTGATGGGTG	0.448													3	48					0	0	0.184627	0	0
ING1	3621	broad.mit.edu	37	13	111371712	111371712	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr13:111371712C>T	uc001vri.2	+	2	1134	c.702C>T	c.(700-702)ATC>ATT	p.I234I	ING1_uc001vrf.2_Silent_p.I47I|ING1_uc001vrg.2_Silent_p.I22I|ING1_uc001vrh.2_Silent_p.I91I	NM_005537	NP_005528	Q9UK53	ING1_HUMAN	inhibitor of growth family, member 1 isoform D	234					cell cycle|negative regulation of cell growth|negative regulation of cell proliferation	nucleus	zinc ion binding			ovary(1)	1	all_lung(23;3.61e-05)|Lung NSC(43;0.00144)|Lung SC(71;0.0753)|all_neural(89;0.077)|Medulloblastoma(90;0.148)		BRCA - Breast invasive adenocarcinoma(86;0.188)			AGATCCAGATCGTGAGCCAGA	0.672													37	28					0	0	0.864702	0	0
OR11H12	440153	broad.mit.edu	37	14	19378555	19378555	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr14:19378555G>A	uc010tkp.1	+	1	962	c.962G>A	c.(961-963)GGA>GAA	p.G321E		NM_001013354	NP_001013372	B2RN74	O11HC_HUMAN	olfactory receptor, family 11, subfamily H,	321	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AAAGTTCTGGGAAGTTCCAAC	0.363													59	30					0	0	0.870114	0	0
POTEG	404785	broad.mit.edu	37	14	19553834	19553834	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr14:19553834C>T	uc001vuz.1	+	1	470	c.418C>T	c.(418-420)CTG>TTG	p.L140L	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	140										ovary(1)	1						TCGAGAAGATCTGGACAAGCT	0.567													23	63					0	0	0.804634	0	0
OR4K13	390433	broad.mit.edu	37	14	20502084	20502084	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr14:20502084G>A	uc010tkz.1	-	1	834	c.834C>T	c.(832-834)TTC>TTT	p.F278F		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	278	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		AGAGAGGTGTGAAAATTGTGT	0.333													8	1					0	0	0.307466	0	0
CHD8	57680	broad.mit.edu	37	14	21883941	21883941	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr14:21883941G>A	uc001was.1	-	6	1099	c.1005C>T	c.(1003-1005)CTC>CTT	p.L335L	CHD8_uc001war.1_Silent_p.L231L	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	614					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		CTGGTTCAGGGAGGATAGGCT	0.433													20	11					0	0	0.624587	0	0
NYNRIN	57523	broad.mit.edu	37	14	24885224	24885224	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr14:24885224C>T	uc001wpf.3	+	9	4587	c.4269C>T	c.(4267-4269)TCC>TCT	p.S1423S		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1423	Helical; (Potential).				DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						GCCTCTCATCCCTTCCGTTTA	0.617													35	18					0	0	0.847076	0	0
GZMH	2999	broad.mit.edu	37	14	25076890	25076890	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr14:25076890G>A	uc001wpr.1	-	3	312	c.267C>T	c.(265-267)ATC>ATT	p.I89I	GZMH_uc010aly.1_Silent_p.I89I|GZMH_uc010alz.1_Intron	NM_033423	NP_219491	P20718	GRAH_HUMAN	granzyme H precursor	89	Peptidase S1.				apoptosis|cytolysis|proteolysis	cytoplasm	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(265;0.0267)		TTTTCACAGGGATAAACTGCT	0.532													65	22					0	0	0.870114	0	0
PELI2	57161	broad.mit.edu	37	14	56755318	56755318	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr14:56755318C>T	uc001xch.2	+	4	759	c.473C>T	c.(472-474)GCC>GTC	p.A158V		NM_021255	NP_067078	Q9HAT8	PELI2_HUMAN	pellino 2	158					innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of protein phosphorylation|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	protein binding			ovary(1)	1						ATATTCGCCGCCGGATTTGAC	0.438													16	7					0	0	0.608945	0	0
KCNH5	27133	broad.mit.edu	37	14	63453898	63453898	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr14:63453898C>T	uc001xfx.2	-	5	492	c.441G>A	c.(439-441)ACG>ACA	p.T147T	KCNH5_uc001xfy.2_Silent_p.T147T|KCNH5_uc001xfz.1_Silent_p.T89T|KCNH5_uc001xga.2_Silent_p.T89T	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	147	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		GGGCAAATTTCGTCCAACCTT	0.388													28	11					0	0	0.717897	0	0
DICER1	23405	broad.mit.edu	37	14	95574384	95574384	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr14:95574384G>A	uc001ydw.2	-	17	2665	c.2483C>T	c.(2482-2484)TCC>TTC	p.S828F	DICER1_uc010avh.1_5'Flank|DICER1_uc001ydv.2_Missense_Mutation_p.S818F|DICER1_uc001ydx.2_Missense_Mutation_p.S828F	NM_030621	NP_085124	Q9UPY3	DICER_HUMAN	dicer1	828					negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|nerve development|neuron projection morphogenesis|peripheral nervous system myelin formation|positive regulation of myelination|positive regulation of Schwann cell differentiation|pre-miRNA processing|production of siRNA involved in RNA interference|targeting of mRNA for destruction involved in RNA interference	cytosol|RNA-induced silencing complex	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity			skin(2)|ovary(1)|pancreas(1)|lung(1)	5		all_cancers(154;0.0621)|all_epithelial(191;0.223)		Epithelial(152;0.211)|COAD - Colon adenocarcinoma(157;0.215)		CAACTCAATGGATATGGTAAC	0.378			Mis F|N			pleuropulmonary blastoma			DICER_1_syndrome_|Familial_Multinodular_Goiter_				24	7					0	0	0.681144	0	0
C14orf49	161176	broad.mit.edu	37	14	95932475	95932475	+	Silent	SNP	G	A	A	rs147089377		TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr14:95932475G>A	uc001yei.3	-	3	435	c.420C>T	c.(418-420)ATC>ATT	p.I140I	C14orf49_uc010avi.2_Silent_p.I140I|C14orf49_uc001yej.1_Silent_p.I140I	NM_152592	NP_689805	Q6ZMZ3	SYNE3_HUMAN	nesprin-3	140	Cytoplasmic (Potential).				cytoskeletal anchoring at nuclear membrane	integral to membrane|nuclear outer membrane|SUN-KASH complex	actin binding			central_nervous_system(1)	1		all_cancers(154;0.0937)		COAD - Colon adenocarcinoma(157;0.245)		GCTGGAGCTCGATGTGGGGCT	0.632													36	20					0	0	0.827153	0	0
C14orf68	283600	broad.mit.edu	37	14	100795125	100795125	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr14:100795125G>A	uc001yhc.2	+	5	463	c.390G>A	c.(388-390)CAG>CAA	p.Q130Q	C14orf68_uc001yhd.2_5'UTR	NM_207117	NP_997000	Q6Q0C1	S2547_HUMAN	chromosome 14 open reading frame 68	130	Solcar 2.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0		Melanoma(154;0.152)				CACAGGCGCAGAAGCAGCAGC	0.677													20	5					0	0	0.624587	0	0
ADAM6	8755	broad.mit.edu	37	14	106174820	106174820	+	RNA	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr14:106174820C>T	uc010tyt.1	-	3631		c.59514G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron					Parts of antibodies, mostly variable regions.												0						TGTACAGGTCCCCGGAGGCAT	0.642													19	16					0	0	0.557998	0	0
ADAM6	8755	broad.mit.edu	37	14	106236039	106236039	+	RNA	SNP	T	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr14:106236039T>A	uc010tyt.1	-	3616		c.57905A>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						GGGAGGGCTTTGTTGGAGACC	0.597													156	78					0	0	0.870114	0	0
ADAM6	8755	broad.mit.edu	37	14	106311833	106311833	+	RNA	SNP	C	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr14:106311833C>A	uc010tyt.1	-	3608		c.57090G>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Missense_Mutation_p.R74L|uc001ysk.1_Missense_Mutation_p.R74L|uc001ysl.1_Missense_Mutation_p.R74L|uc001ysm.1_Missense_Mutation_p.R17L|uc001ysn.1_Missense_Mutation_p.R17L|uc001yso.1_Missense_Mutation_p.R17L					Parts of antibodies, mostly variable regions.												0						GTAGCTGTCCCGTCTTTGTAT	0.582													19	25					5.35356e-11	5.39627e-11	0.639603	1	0
ADAM6	8755	broad.mit.edu	37	14	106478136	106478136	+	RNA	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr14:106478136C>T	uc010tyt.1	-	1857		c.36150G>A								Parts of antibodies, mostly variable regions.												0						ACGGCCGTGTCCGCGGCGGTC	0.607													30	326					0	0	0.870114	0	0
ADAM6	8755	broad.mit.edu	37	14	106963025	106963025	+	RNA	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr14:106963025C>T	uc010tyt.1	-	207		c.9659G>A								Parts of antibodies, mostly variable regions.												0						AATGGTGACTCTGTCCTGGAA	0.527													61	37					0	0	0.870114	0	0
Unknown	0	broad.mit.edu	37	15	22472946	22472946	+	RNA	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:22472946C>T	uc001yuj.1	-	2		c.325G>A								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:H6.																		ACGGCCCTGTCCGCGGCGGTC	0.602													66	92					0	0	0.870114	0	0
C15orf2	23742	broad.mit.edu	37	15	24922455	24922455	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:24922455G>A	uc001ywo.2	+	1	1915	c.1441G>A	c.(1441-1443)GGA>AGA	p.G481R		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	481	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TAATGAGAAAGGAGGCTCTTA	0.498													34	118					0	0	0.796494	0	0
TJP1	7082	broad.mit.edu	37	15	30009029	30009029	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:30009029G>A	uc001zcr.2	-	23	4463	c.3988C>T	c.(3988-3990)CAA>TAA	p.Q1330*	TJP1_uc010azl.2_Nonsense_Mutation_p.Q1318*|TJP1_uc001zcq.2_Nonsense_Mutation_p.Q1254*|TJP1_uc001zcs.2_Nonsense_Mutation_p.Q1250*	NM_003257	NP_003248	Q07157	ZO1_HUMAN	tight junction protein 1 isoform a	1330					cell-cell junction assembly|cellular component disassembly involved in apoptosis	basolateral plasma membrane|cell-cell adherens junction|Golgi apparatus|tight junction				ovary(4)|central_nervous_system(1)|pancreas(1)	6		all_lung(180;7.48e-11)|Breast(32;0.000153)		all cancers(64;3.29e-10)|Epithelial(43;5.34e-09)|BRCA - Breast invasive adenocarcinoma(123;0.0034)|GBM - Glioblastoma multiforme(186;0.0139)|Lung(196;0.186)		TGAGGTTTTTGAGGTTCTGGG	0.343													33	27					0	0	0.853193	0	0
RYR3	6263	broad.mit.edu	37	15	33954484	33954484	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:33954484G>A	uc001zhi.2	+	35	4823	c.4753G>A	c.(4753-4755)GAC>AAC	p.D1585N	RYR3_uc010bar.2_Missense_Mutation_p.D1585N	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1585	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CAGCCACGTGGACCTCTCCCA	0.612													11	6					0	0	0.387290	0	0
SLC12A6	9990	broad.mit.edu	37	15	34551109	34551109	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:34551109G>A	uc001zhw.2	-	4	612	c.448C>T	c.(448-450)CTC>TTC	p.L150F	SLC12A6_uc001zhv.2_Missense_Mutation_p.L99F|SLC12A6_uc001zhx.2_Missense_Mutation_p.L135F|SLC12A6_uc001zhy.2_RNA|SLC12A6_uc001zhz.2_RNA|SLC12A6_uc001zia.2_Missense_Mutation_p.L91F|SLC12A6_uc001zib.2_Missense_Mutation_p.L141F|SLC12A6_uc001zic.2_Missense_Mutation_p.L150F|SLC12A6_uc010bau.2_Missense_Mutation_p.L150F|SLC12A6_uc001zid.2_Missense_Mutation_p.L91F|SLC12A6_uc001zhu.2_Missense_Mutation_p.L11F	NM_133647	NP_598408	Q9UHW9	S12A6_HUMAN	solute carrier family 12, member 6 isoform a	150	Cytoplasmic (Potential).				angiogenesis|cellular hypotonic salinity response|potassium ion transport|sodium ion transport	basolateral plasma membrane|integral to membrane	potassium:chloride symporter activity			central_nervous_system(5)|ovary(1)|skin(1)	7		all_lung(180;2.78e-08)		all cancers(64;3.43e-17)|GBM - Glioblastoma multiforme(113;2.6e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0301)	Potassium Chloride(DB00761)	ATGCGGTTGAGGAGGGAAGAC	0.433													11	26					0	0	0.411799	0	0
LPCAT4	254531	broad.mit.edu	37	15	34656416	34656416	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:34656416G>A	uc001zig.2	-	4	664	c.570C>T	c.(568-570)ACC>ACT	p.T190T	LPCAT4_uc010bav.1_Silent_p.T190T	NM_153613	NP_705841	Q643R3	LPCT4_HUMAN	lysophosphatidylcholine acyltransferase 4	190					phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity|calcium ion binding				0						TGCCTCCTGAGGTGGCCCGCC	0.592													81	107					0	0	0.870114	0	0
AQR	9716	broad.mit.edu	37	15	35176814	35176814	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:35176814G>A	uc001ziv.2	-	26	3120	c.2939C>T	c.(2938-2940)CCC>CTC	p.P980L		NM_014691	NP_055506	O60306	AQR_HUMAN	aquarius	980						catalytic step 2 spliceosome	RNA binding			large_intestine(1)	1		Lung NSC(122;8.7e-10)|all_lung(180;1.47e-08)		all cancers(64;4.34e-18)|GBM - Glioblastoma multiforme(113;4.59e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0283)		TTTAAAAATGGGTTGAGGAGC	0.368													19	25					0	0	0.557998	0	0
PLCB2	5330	broad.mit.edu	37	15	40580978	40580978	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:40580978G>A	uc001zld.2	-	32	3797	c.3496C>T	c.(3496-3498)CCA>TCA	p.P1166S	PLCB2_uc001zlc.2_Missense_Mutation_p.P150S|PLCB2_uc010bbo.2_Missense_Mutation_p.P1162S|PLCB2_uc010ucm.1_Missense_Mutation_p.P1151S	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	1166					activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		CACAGCTCTGGGGGGCACTCG	0.627													15	35					0	0	0.520397	0	0
SPINT1	6692	broad.mit.edu	37	15	41146659	41146659	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:41146659C>T	uc001zna.2	+	7	1257	c.1053C>T	c.(1051-1053)TTC>TTT	p.F351F	SPINT1_uc001znb.2_Silent_p.F335F|SPINT1_uc001znc.2_Silent_p.F335F|SPINT1_uc010ucs.1_Silent_p.F342F	NM_181642	NP_857593	O43278	SPIT1_HUMAN	serine peptidase inhibitor, Kunitz type 1	351	LDL-receptor class A.					extracellular region|membrane fraction	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)	1		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;2.91e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		TCGACAGTTTCCTGGAGTGTG	0.622													24	24					0	0	0.740014	0	0
MGA	23269	broad.mit.edu	37	15	42034889	42034889	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:42034889C>T	uc010ucy.1	+	15	4912	c.4731C>T	c.(4729-4731)GTC>GTT	p.V1577V	MGA_uc010ucz.1_Intron|MGA_uc010uda.1_Silent_p.V193V	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	1577						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		CAGTAATGGTCGTCACACCTG	0.498													15	13					0	0	0.500413	0	0
DUOX2	50506	broad.mit.edu	37	15	45398521	45398521	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:45398521C>T	uc010bea.2	-	17	2153	c.1950G>A	c.(1948-1950)ATG>ATA	p.M650I	DUOX2_uc001zun.2_Missense_Mutation_p.M650I	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	650	Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		CTGGCCACTCCATCGCTGGGG	0.592													15	37					0	0	0.539581	0	0
ATP8B4	79895	broad.mit.edu	37	15	50152492	50152492	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:50152492C>T	uc001zxu.2	-	28	3620	c.3478G>A	c.(3478-3480)GAA>AAA	p.E1160K	ATP8B4_uc010ber.2_Missense_Mutation_p.E1033K|ATP8B4_uc010ufd.1_Missense_Mutation_p.E970K|ATP8B4_uc010ufe.1_RNA|ATP8B4_uc001zxt.2_Missense_Mutation_p.E163K	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	1160	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		TGTGTCTTTTCCAGCCCTGAT	0.418													43	50					0	0	0.870114	0	0
TRPM7	54822	broad.mit.edu	37	15	50899415	50899415	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:50899415G>A	uc001zyt.3	-	20	2955	c.2691C>T	c.(2689-2691)GCC>GCT	p.A897A	TRPM7_uc010bew.1_Silent_p.A897A|TRPM7_uc001zyu.2_Silent_p.A455A	NM_017672	NP_060142	Q96QT4	TRPM7_HUMAN	transient receptor potential cation channel,	897	Cytoplasmic (Potential).				cell death	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein serine/threonine kinase activity			ovary(4)|stomach(3)|breast(1)|central_nervous_system(1)|skin(1)	10				all cancers(107;0.000819)|GBM - Glioblastoma multiforme(94;0.0045)		CTTTCTCAATGGCATAAGTAA	0.313													19	27					0	0	0.667858	0	0
CGNL1	84952	broad.mit.edu	37	15	57730212	57730212	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:57730212C>T	uc002aeg.2	+	2	91	c.15C>T	c.(13-15)TTC>TTT	p.F5F	CGNL1_uc010bfw.2_Silent_p.F5F	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	5	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		AGCTGTATTTCGGTGAATATC	0.438													149	166					0	0	0.870114	0	0
MAP2K1	5604	broad.mit.edu	37	15	66727441	66727441	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:66727441T>A	uc010bhq.2	+	2	632	c.157T>A	c.(157-159)TTT>ATT	p.F53I	MAP2K1_uc010ujp.1_Missense_Mutation_p.F31I	NM_002755	NP_002746	Q02750	MP2K1_HUMAN	mitogen-activated protein kinase kinase 1	53			F -> S (in CFC syndrome).		activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|plasma membrane	ATP binding|MAP kinase kinase activity|protein serine/threonine kinase activity|protein tyrosine kinase activity				0						CCTTGAGGCCTTTCTTACCCA	0.547									Cardiofaciocutaneous_syndrome				40	94					0	0	0.847076	0	0
KIF23	9493	broad.mit.edu	37	15	69732339	69732339	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:69732339T>C	uc002asb.2	+	16	1927	c.1810T>C	c.(1810-1812)TTT>CTT	p.F604L	KIF23_uc002asc.2_Missense_Mutation_p.F604L|KIF23_uc010bii.2_Missense_Mutation_p.F494L|KIF23_uc010ukc.1_Missense_Mutation_p.F421L	NM_138555	NP_612565	Q02241	KIF23_HUMAN	kinesin family member 23 isoform 1	604	Potential.				blood coagulation|cytokinesis|microtubule-based movement|mitosis|mitotic spindle elongation	cytosol|kinesin complex|microtubule|midbody|nucleoplasm|spindle	ATP binding|microtubule motor activity|protein binding				0						TCAGCGACAGTTTTCTGACAA	0.408													8	27					0	0	0.278610	0	0
THSD4	79875	broad.mit.edu	37	15	71447238	71447238	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:71447238C>T	uc002atb.1	+	2	145	c.66C>T	c.(64-66)TTC>TTT	p.F22F		NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	22						proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						GATTCCAGTTCGTCTGCCCAC	0.552													49	54					0	0	0.870114	0	0
AGPHD1	123688	broad.mit.edu	37	15	78819789	78819789	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:78819789C>T	uc010unc.1	+	4	658	c.545C>T	c.(544-546)CCT>CTT	p.P182L	AGPHD1_uc002bdt.2_Missense_Mutation_p.P182L|AGPHD1_uc010ble.2_Missense_Mutation_p.P182L	NM_001013619	NP_001013641	A2RU49	AGPD1_HUMAN	aminoglycoside phosphotransferase domain	182						cytoplasm	kinase activity				0						AAAAATGTTCCTCTTCTGGAG	0.403													46	58					0	0	0.870114	0	0
CHRNA3	1136	broad.mit.edu	37	15	78909424	78909424	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:78909424C>T	uc002bec.2	-	4	505	c.319G>A	c.(319-321)GAG>AAG	p.E107K	CHRNA3_uc002bea.2_RNA|CHRNA3_uc002beb.2_Missense_Mutation_p.E107K	NM_000743	NP_000734	P32297	ACHA3_HUMAN	cholinergic receptor, nicotinic, alpha 3	107	Extracellular (Potential).				activation of transmembrane receptor protein tyrosine kinase activity|behavioral response to nicotine|locomotory behavior|regulation of acetylcholine secretion|regulation of dendrite morphogenesis|regulation of excitatory postsynaptic membrane potential|regulation of smooth muscle contraction|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|dendrite|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic density|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(3)|ovary(1)	4						CGCATGAACTCTGCCCCACCA	0.552													8	33					0	0	0.387290	0	0
ACAN	176	broad.mit.edu	37	15	89392754	89392754	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:89392754C>T	uc010upo.1	+	10	2192	c.1818C>T	c.(1816-1818)GCC>GCT	p.A606A	ACAN_uc002bmx.2_Silent_p.A606A|ACAN_uc010upp.1_Silent_p.A606A|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	606					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CTACGCTGGCCACCACGGGCC	0.647													11	9					0	0	0.411799	0	0
C15orf42	90381	broad.mit.edu	37	15	90119080	90119080	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:90119080C>T	uc002boe.2	+	1	263	c.263C>T	c.(262-264)GCC>GTC	p.A88V		NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	88					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			GAGGATCGCGCCCACCTGCCC	0.731													6	5					0	0	0.307466	0	0
SEMA4B	10509	broad.mit.edu	37	15	90768389	90768390	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:90768389_90768390GA>AT	uc002boy.2	+	11	1667_1668	c.1384_1385GA>AT	c.(1384-1386)GAT>ATT	p.D462I	SEMA4B_uc002boz.2_Missense_Mutation_p.D462I|SEMA4B_uc010uqd.1_Missense_Mutation_p.D300I|SEMA4B_uc002bpa.2_Missense_Mutation_p.D300I|SEMA4B_uc010bnv.1_Missense_Mutation_p.D100I	NM_020210	NP_064595			semaphorin 4B precursor											ovary(1)|breast(1)|kidney(1)	3	Melanoma(11;0.00551)|Lung NSC(78;0.0125)|all_lung(78;0.0272)		BRCA - Breast invasive adenocarcinoma(143;0.0107)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.217)			CCACACCTACGATGTCCTCTTC	0.673													7	2					0	0	0.115264	0	0
ADAMTS17	170691	broad.mit.edu	37	15	100537692	100537692	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:100537692G>A	uc002bvv.1	-	19	2773	c.2694C>T	c.(2692-2694)GTC>GTT	p.V898V		NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	898	TSP type-1 3.				proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		GCCGCGTAGCGACGTGTGTGC	0.582													5	11					0	0	0.278610	0	0
Unknown	0	broad.mit.edu	37	15	102292797	102292797	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr15:102292797C>G	uc010usj.1	+	4	444	c.385C>G	c.(385-387)CCA>GCA	p.P129A	uc002bxo.2_RNA|uc002bxp.3_5'Flank|uc002bxt.2_5'Flank|uc002bxz.3_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		GAGCTGCTGTCCAACCTGCAC	0.597													3	67					0	0	0.217242	0	0
PRR25	388199	broad.mit.edu	37	16	863791	863791	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr16:863791C>G	uc010uut.1	+	3	1139	c.1139C>G	c.(1138-1140)CCG>CGG	p.P380R		NM_001013638	NP_001013660	Q96S07	PRR25_HUMAN	proline rich 25	380										large_intestine(1)	1						CGGTTCGGGCCGCGCTCCTGC	0.786													6	1					0	0	0.278610	0	0
PTX4	390667	broad.mit.edu	37	16	1536507	1536507	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr16:1536507G>A	uc010uvf.1	-	3	855	c.855C>T	c.(853-855)TTC>TTT	p.F285F		NM_001013658	NP_001013680	Q96A99	PTX4_HUMAN	neuronal pentraxin II-like	290	Pentaxin.					extracellular region	metal ion binding				0						GGGCAGTGACGAAACCAGGGC	0.642													21	8					0	0	0.639603	0	0
ZNF598	90850	broad.mit.edu	37	16	2049609	2049609	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr16:2049609G>A	uc002cof.1	-	11	1956	c.1941C>T	c.(1939-1941)CCC>CCT	p.P647P	ZNF598_uc002coe.1_Silent_p.P11P	NM_178167	NP_835461	Q86UK7	ZN598_HUMAN	zinc finger protein 598	647	Pro-rich.					intracellular	zinc ion binding			lung(1)|breast(1)	2						GGGGTTCCTTGGGGGCACTCC	0.716													12	4					0	0	0.435327	0	0
PKD1	5310	broad.mit.edu	37	16	2168023	2168023	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr16:2168023G>A	uc002cos.1	-	5	1179	c.970C>T	c.(970-972)CGC>TGC	p.R324C	PKD1_uc002cot.1_Missense_Mutation_p.R324C	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	324	Extracellular (Potential).|PKD 1.		R -> L (in ADPKD1).		calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						AGCACATAGCGATGCGAGGCA	0.706													5	0					0	0	0.278610	0	0
CLDN6	9074	broad.mit.edu	37	16	3065827	3065827	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr16:3065827C>T	uc002csu.3	-	2	256	c.196G>A	c.(196-198)GTG>ATG	p.V66M		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	66	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						GAGTCGTACACCTTGCACTGC	0.637													46	16					0	0	0.870114	0	0
GRIN2A	2903	broad.mit.edu	37	16	9934839	9934839	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr16:9934839T>A	uc002czo.3	-	6	1999	c.1451A>T	c.(1450-1452)AAG>ATG	p.K484M	GRIN2A_uc010uym.1_Missense_Mutation_p.K484M|GRIN2A_uc010uyn.1_Missense_Mutation_p.K327M|GRIN2A_uc002czr.3_Missense_Mutation_p.K484M	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	484	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CTTGCCATGCTTCCCATTGGT	0.433													64	35					0	0	0.870114	0	0
GPR139	124274	broad.mit.edu	37	16	20043681	20043682	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr16:20043681_20043682CC>TT	uc002dgu.1	-	2	599_600	c.437_438GG>AA	c.(436-438)CGG>CAA	p.R146Q	GPR139_uc010vaw.1_Missense_Mutation_p.R53Q	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	146	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(2)	2						CAATGACTTTCCGGGTGCGGGC	0.515													94	43					0	0	0.115264	0	0
VWA3A	146177	broad.mit.edu	37	16	22149750	22149750	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr16:22149750G>A	uc010vbq.1	+	22	2305	c.2209G>A	c.(2209-2211)GAA>AAA	p.E737K	VWA3A_uc010bxd.2_RNA|VWA3A_uc010bxc.2_Missense_Mutation_p.E745K	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	737						extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		CCTCCCGAAAGAAAAACCAAA	0.567													4	3					0	0	0.217242	0	0
SULT1A1	6817	broad.mit.edu	37	16	28631441	28631441	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr16:28631441G>A	uc002dqm.2	-	2	429	c.81C>T	c.(79-81)CTC>CTT	p.L27L	uc010vct.1_Intron|SULT1A1_uc002dqn.2_5'UTR|SULT1A1_uc002dqo.2_5'UTR|SULT1A1_uc002dqp.2_5'UTR	NM_177536	NP_803880	P50225	ST1A1_HUMAN	sulfotransferase family, cytosolic, 1A,	Error:Variant_position_missing_in_P50225_after_alignment					3'-phosphoadenosine 5'-phosphosulfate metabolic process|catecholamine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						CCTTTCCCTGGAGAATGCTCA	0.338													10	12					0	0	0.435327	0	0
SRCAP	10847	broad.mit.edu	37	16	30748990	30748990	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr16:30748990C>T	uc002dze.1	+	34	8014	c.7629C>T	c.(7627-7629)CTC>CTT	p.L2543L	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Silent_p.L2338L	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2543	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			TCACTAATCTCCCCTTGGGCT	0.522													8	81					0	0	0.335167	0	0
ARMC5	79798	broad.mit.edu	37	16	31477519	31477519	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr16:31477519C>T	uc002ecc.2	+	6	2646	c.2117C>T	c.(2116-2118)TCC>TTC	p.S706F	ARMC5_uc010vfn.1_Missense_Mutation_p.S801F|ARMC5_uc010vfo.1_Missense_Mutation_p.S738F|ARMC5_uc002eca.3_3'UTR|ARMC5_uc010vfp.1_Missense_Mutation_p.S514F|ARMC5_uc002ecb.2_3'UTR	NM_001105247	NP_001098717	Q96C12	ARMC5_HUMAN	armadillo repeat containing 5 isoform a	706							binding			pancreas(1)	1						GACTCCCTTTCCTGCCTCCAA	0.647													16	16					0	0	0.608945	0	0
ITFG1	81533	broad.mit.edu	37	16	47292640	47292640	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr16:47292640G>A	uc002eet.2	-	12	1295	c.1233C>T	c.(1231-1233)GAC>GAT	p.D411D	ITFG1_uc010vgg.1_Silent_p.D156D|ITFG1_uc010vgh.1_Silent_p.D298D	NM_030790	NP_110417	Q8TB96	TIP_HUMAN	integrin alpha FG-GAP repeat containing 1	411						extracellular region|integral to membrane				ovary(1)|central_nervous_system(1)	2		all_cancers(37;0.0613)|all_lung(18;0.0543)|Lung NSC(13;0.227)				GCACTACAATGTCCAAGATTC	0.284													11	8					0	0	0.411799	0	0
CDH8	1006	broad.mit.edu	37	16	61687817	61687817	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr16:61687817C>T	uc002eog.1	-	12	2347	c.2095G>A	c.(2095-2097)GAT>AAT	p.D699N		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	699	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		GGTTTAATATCCTTACGGGGT	0.428													42	22					0	0	0.853193	0	0
RRAD	6236	broad.mit.edu	37	16	66956131	66956131	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr16:66956131C>T	uc002eqn.2	-	5	927	c.775G>A	c.(775-777)GAA>AAA	p.E259K	RRAD_uc002eqo.2_Missense_Mutation_p.E259K	NM_001128850	NP_001122322	P55042	RAD_HUMAN	Ras-related associated with diabetes	259					small GTPase mediated signal transduction	plasma membrane	calmodulin binding|GTP binding|GTPase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0862)|Epithelial(162;0.198)		GCGTTGGCTTCTTTGCTGTCC	0.587													31	8					0	0	0.796494	0	0
ZFP90	146198	broad.mit.edu	37	16	68597632	68597632	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr16:68597632C>T	uc010cff.2	+	5	1234	c.942C>T	c.(940-942)CTC>CTT	p.L314L	ZFP90_uc002ewb.2_Missense_Mutation_p.S120F|ZFP90_uc002ewc.2_Missense_Mutation_p.S120F|ZFP90_uc002ewd.2_Silent_p.L314L|ZFP90_uc002ewe.2_Silent_p.L314L	NM_133458	NP_597715	Q8TF47	ZFP90_HUMAN	zinc finger protein 90	314	C2H2-type 4.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00233)|Epithelial(162;0.0184)|all cancers(182;0.0946)		AGTGTAGTCTCTGTGGGAAAG	0.483													28	12					0	0	0.750413	0	0
HYDIN	54768	broad.mit.edu	37	16	70989293	70989293	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr16:70989293C>T	uc002ezr.2	-	40	6426	c.6298G>A	c.(6298-6300)GAA>AAA	p.E2100K		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2101										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TCCTCTCCTTCCTTCACGGAC	0.572													6	35					0	0	0.248553	0	0
GLG1	2734	broad.mit.edu	37	16	74530429	74530429	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr16:74530429G>A	uc002fcy.3	-	5	938	c.888C>T	c.(886-888)CTC>CTT	p.L296L	GLG1_uc002fcx.2_Silent_p.L296L|GLG1_uc002fcw.3_Silent_p.L285L|GLG1_uc002fcz.3_Intron	NM_001145667	NP_001139139	Q92896	GSLG1_HUMAN	golgi apparatus protein 1 isoform 3	296	Cys-rich GLG1 4.|Extracellular (Potential).					Golgi membrane|integral to membrane	receptor binding			ovary(1)|breast(1)	2						CAGCCACCCGGAGAATGGCTT	0.463													36	27					0	0	0.788014	0	0
CDH13	1012	broad.mit.edu	37	16	83636115	83636115	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr16:83636115G>A	uc002fgx.2	+	8	1137	c.1017G>A	c.(1015-1017)CTG>CTA	p.L339L	CDH13_uc010vns.1_Silent_p.L386L|CDH13_uc010vnt.1_Silent_p.L85L|CDH13_uc010vnu.1_Silent_p.L300L	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	339	Cadherin 2.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		TGGCTGGACTGGATGTTGGAT	0.423													11	183					0	0	0.435327	0	0
OR3A1	4994	broad.mit.edu	37	17	3195151	3195151	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:3195151G>A	uc002fvh.1	-	1	726	c.726C>T	c.(724-726)TCC>TCT	p.S242S		NM_002550	NP_002541	P47881	OR3A1_HUMAN	olfactory receptor, family 3, subfamily A,	242	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			kidney(2)|central_nervous_system(1)	3						AGCCACATGTGGAGAAGGCTT	0.498													19	29					0	0	0.592651	0	0
OR1E1	8387	broad.mit.edu	37	17	3301698	3301698	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:3301698C>T	uc002fvj.1	-	1	7	c.7G>A	c.(7-9)GGA>AGA	p.G3R		NM_003553	NP_003544	P30953	OR1E1_HUMAN	olfactory receptor, family 1, subfamily E,	3	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGATTTTGTCCCATCATGCTC	0.433													27	36					0	0	0.840704	0	0
MYBBP1A	10514	broad.mit.edu	37	17	4442750	4442750	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:4442750G>A	uc002fyb.3	-	26	4009	c.3947C>T	c.(3946-3948)GCC>GTC	p.A1316V	MYBBP1A_uc002fxz.3_Missense_Mutation_p.A1316V|SPNS2_uc002fxx.2_3'UTR|SPNS2_uc002fxy.2_3'UTR|MYBBP1A_uc002fya.3_Missense_Mutation_p.A261V|MYBBP1A_uc010vsa.1_Missense_Mutation_p.A358V	NM_014520	NP_055335	Q9BQG0	MBB1A_HUMAN	MYB binding protein 1a isoform 2	1316	Required for nuclear and nucleolar localization (By similarity).				nucleocytoplasmic transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NLS-dependent protein nuclear import complex|nucleolus	DNA binding|DNA-directed DNA polymerase activity|transcription factor binding			ovary(1)|skin(1)	2						TTTCTTCTTGGCCCCACTCTG	0.577													69	59					0	0	0.870114	0	0
MINK1	50488	broad.mit.edu	37	17	4788861	4788861	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:4788861G>A	uc010vsl.1	+	7	788	c.592G>A	c.(592-594)GAG>AAG	p.E198K	MINK1_uc010vsk.1_Missense_Mutation_p.E198K|MINK1_uc010vsm.1_Missense_Mutation_p.E198K|MINK1_uc010vsn.1_Missense_Mutation_p.E198K|MINK1_uc010vso.1_Missense_Mutation_p.E143K|MINK1_uc010vsp.1_5'UTR	NM_153827	NP_722549	Q8N4C8	MINK1_HUMAN	misshapen-like kinase 1 isoform 3	198	Protein kinase.				JNK cascade	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)|skin(1)	6						GATGGCTCCAGAGGTCATCGC	0.557													26	63					0	0	0.717897	0	0
USP6	9098	broad.mit.edu	37	17	5058737	5058737	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:5058737C>T	uc002gau.1	+	31	4894	c.2664C>T	c.(2662-2664)TTC>TTT	p.F888F	USP6_uc002gav.1_Silent_p.F888F|USP6_uc010ckz.1_Silent_p.F571F	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	888					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						AACTGTATTTCCTGTCACCTC	0.458			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								26	75					0	0	0.740014	0	0
NEURL4	84461	broad.mit.edu	37	17	7227009	7227009	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:7227009G>A	uc002gga.1	-	13	2302	c.2295C>T	c.(2293-2295)GTC>GTT	p.V765V	NEURL4_uc002ggb.1_Silent_p.V765V|NEURL4_uc002ggc.1_Silent_p.V111V	NM_032442	NP_115818	Q96JN8	NEUL4_HUMAN	neuralized homolog 4 isoform 1	765	NHR 4.						protein binding			upper_aerodigestive_tract(1)|ovary(1)	2						TCTTCTGAATGACAATTTCAA	0.602													10	6					0	0	0.387290	0	0
POLR2A	5430	broad.mit.edu	37	17	7417412	7417412	+	Silent	SNP	T	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:7417412T>C	uc002ghf.3	+	29	6063	c.5829T>C	c.(5827-5829)ACT>ACC	p.T1943T		NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	1943	50.|52 X 7 AA approximate tandem repeats of Y-[ST]-P-[STQ]-[ST]-P-[SRTEVKGN].				mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				ACTCTCCCACTTCCCCTGGTT	0.383													31	33					0	0	0.834066	0	0
POLR2A	5430	broad.mit.edu	37	17	7417414	7417414	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:7417414C>T	uc002ghf.3	+	29	6065	c.5831C>T	c.(5830-5832)TCC>TTC	p.S1944F		NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	1944	50.|52 X 7 AA approximate tandem repeats of Y-[ST]-P-[STQ]-[ST]-P-[SRTEVKGN].				mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				TCTCCCACTTCCCCTGGTTAC	0.393													28	32					0	0	0.812448	0	0
SHBG	6462	broad.mit.edu	37	17	7535056	7535056	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:7535056C>T	uc002gie.2	+	5	743	c.705C>T	c.(703-705)TTC>TTT	p.F235F	SHBG_uc010cmo.2_Silent_p.F123F|SHBG_uc010cmp.2_Silent_p.F177F|SHBG_uc010cmq.2_Silent_p.F123F|SHBG_uc010cmr.2_Silent_p.F123F|SHBG_uc010cms.2_Intron|SHBG_uc010cmt.2_Silent_p.F177F|SHBG_uc010cmu.2_Silent_p.F177F|SHBG_uc010cmz.2_Silent_p.F177F|SHBG_uc010cmv.2_Silent_p.F123F|SHBG_uc010cmw.2_Silent_p.F123F|SHBG_uc010cmx.2_Intron|SHBG_uc010cmy.2_Silent_p.F177F|SHBG_uc002gid.3_Silent_p.F177F|SHBG_uc010cnd.2_Silent_p.F181F|SHBG_uc010cna.2_Intron|SHBG_uc010vue.1_Silent_p.F217F|SHBG_uc010vuf.1_Silent_p.F235F|SHBG_uc010cnb.2_Silent_p.F235F|SHBG_uc010cnc.2_Silent_p.F181F	NM_001040	NP_001031	P04278	SHBG_HUMAN	sex hormone-binding globulin isoform 1	235	Laminin G-like 2.				hormone transport	extracellular region	androgen binding|protein homodimerization activity	p.0?(1)|p.?(1)			0		all_cancers(10;0.0867)		READ - Rectum adenocarcinoma(115;0.168)	Danazol(DB01406)|Dromostanolone(DB00858)|Estradiol(DB00783)|Estrone(DB00655)|Fluoxymesterone(DB01185)|Hydrocortisone(DB00741)|Mitotane(DB00648)|Norethindrone(DB00717)|Testosterone(DB00624)	AGGCAGAATTCAATCTCCGAG	0.547													110	98					0	0	0.870114	0	0
MYH8	4626	broad.mit.edu	37	17	10317277	10317277	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:10317277C>T	uc002gmm.2	-	12	1184	c.1089G>A	c.(1087-1089)GGG>GGA	p.G363G	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	363	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						ATTTCATGTTCCCATAATGCA	0.448									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				56	49					0	0	0.870114	0	0
MYH2	4620	broad.mit.edu	37	17	10429959	10429959	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:10429959C>T	uc010coi.2	-	30	4272	c.4144G>A	c.(4144-4146)GAG>AAG	p.E1382K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E1382K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1382	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						GCGTCCGTCTCGTATTTGGTC	0.532													91	91					0	0	0.870114	0	0
MYH2	4620	broad.mit.edu	37	17	10438617	10438617	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:10438617G>A	uc010coi.2	-	18	2168	c.2040C>T	c.(2038-2040)ATC>ATT	p.I680I	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.I680I|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	680	Myosin head-like.|Actin-binding (By similarity).				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TCTCATTGGGGATGATACACC	0.413													6	21					0	0	0.248553	0	0
MYH2	4620	broad.mit.edu	37	17	10442632	10442632	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:10442632C>T	uc010coi.2	-	14	1434	c.1306G>A	c.(1306-1308)GAG>AAG	p.E436K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E436K|MYH2_uc010coj.2_Missense_Mutation_p.E436K	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	436	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						AACATCTTCTCGTAGACGGCT	0.483													35	130					0	0	0.847076	0	0
MYH2	4620	broad.mit.edu	37	17	10448697	10448697	+	Silent	SNP	G	A	A	rs149579742		TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:10448697G>A	uc010coi.2	-	5	599	c.471C>T	c.(469-471)TCC>TCT	p.S157S	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.S157S|MYH2_uc010coj.2_Silent_p.S157S	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	157	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle	p.S157S(1)		ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TGTCAGAGATGGAGAAGATGT	0.537													40	208					0	0	0.870114	0	0
RICH2	9912	broad.mit.edu	37	17	12812271	12812271	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:12812271G>A	uc002gnr.3	+	4	583	c.256G>A	c.(256-258)GGA>AGA	p.G86R	RICH2_uc010vvk.1_Missense_Mutation_p.G86R|RICH2_uc010vvl.1_Missense_Mutation_p.G86R|RICH2_uc002gns.3_5'UTR|RICH2_uc010vvm.1_Missense_Mutation_p.G86R|RICH2_uc010vvn.1_RNA	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	86	BAR.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						AGCTATCCTGGGAGATGACAC	0.468													49	160					0	0	0.870114	0	0
RICH2	9912	broad.mit.edu	37	17	12862070	12862070	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:12862070C>T	uc002gnr.3	+	16	1706	c.1379C>T	c.(1378-1380)CCA>CTA	p.P460L	RICH2_uc010vvk.1_Missense_Mutation_p.P460L|RICH2_uc010vvl.1_Missense_Mutation_p.P460L|RICH2_uc002gns.3_Missense_Mutation_p.P260L|RICH2_uc010vvm.1_Missense_Mutation_p.P460L|RICH2_uc010vvn.1_RNA|RICH2_uc002gnt.1_Missense_Mutation_p.P183L	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	460					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						TATGGGAGTCCAGTACACGTG	0.577													3	24					0	0	0.184627	0	0
TRIM16	10626	broad.mit.edu	37	17	15519013	15519013	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:15519013G>A	uc002gor.1	-	8	1883	c.1546C>T	c.(1546-1548)CCT>TCT	p.P516S	CDRT1_uc002gov.3_Missense_Mutation_p.P206S			O95361	TRI16_HUMAN	SubName: Full=Putative uncharacterized protein; Flags: Fragment;	Error:Variant_position_missing_in_O95361_after_alignment					histone H3 acetylation|histone H4 acetylation|positive regulation of interleukin-1 beta secretion|positive regulation of keratinocyte differentiation|positive regulation of retinoic acid receptor signaling pathway|positive regulation of transcription, DNA-dependent|response to growth hormone stimulus|response to organophosphorus|response to retinoic acid	cytoplasm|plasma membrane|PML body	DNA binding|interleukin-1 binding|NACHT domain binding|zinc ion binding			ovary(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (92;0.0839)|Epithelial(1;8.4e-29)|all cancers(1;3.06e-28)|Colorectal(1;1.57e-19)|OV - Ovarian serous cystadenocarcinoma(1;6.1e-17)|COAD - Colon adenocarcinoma(1;3.38e-12)|READ - Rectum adenocarcinoma(2;1.46e-05)|BRCA - Breast invasive adenocarcinoma(8;0.0559)		TTGGACAAAGGAAGGGATGTG	0.438													14	13					0	0	0.654019	0	0
CCDC144A	9720	broad.mit.edu	37	17	16612813	16612813	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:16612813C>T	uc002gqk.1	+	5	1518	c.1442C>T	c.(1441-1443)CCA>CTA	p.P481L	CCDC144A_uc002gql.1_Intron|LOC162632_uc010cpj.1_5'Flank	NM_014695	NP_055510	A2RUR9	C144A_HUMAN	coiled-coil domain containing 144A	481											0						TCTTTACCACCAGATTCTGAC	0.338													13	11					0	0	0.457914	0	0
RAI1	10743	broad.mit.edu	37	17	17700963	17700963	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:17700963C>T	uc002grm.2	+	3	5170	c.4701C>T	c.(4699-4701)CCC>CCT	p.P1567P	RAI1_uc002grn.1_Silent_p.P1567P	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	1567						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		AGGTGCTGCCCCTGGATCCCG	0.637													13	46					0	0	0.457914	0	0
TOP3A	7156	broad.mit.edu	37	17	18183895	18183895	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:18183895C>T	uc002gsx.1	-	17	2328	c.2099G>A	c.(2098-2100)AGG>AAG	p.R700K	TOP3A_uc010cpz.1_Missense_Mutation_p.R152K|TOP3A_uc010vxr.1_Missense_Mutation_p.R230K|TOP3A_uc002gsw.1_Missense_Mutation_p.R152K|TOP3A_uc010vxs.1_Missense_Mutation_p.R598K	NM_004618	NP_004609	Q13472	TOP3A_HUMAN	topoisomerase (DNA) III alpha	700					DNA topological change|meiosis	chromosome|PML body	ATP binding|DNA topoisomerase type I activity|protein binding|zinc ion binding			skin(3)	3						ACTGCTGTCCCTGCTGGCCTC	0.582													6	30					0	0	0.278610	0	0
CCDC144C	348254	broad.mit.edu	37	17	20239222	20239222	+	RNA	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:20239222C>T	uc010cqy.1	+	3		c.636C>T				NR_023380				Homo sapiens cDNA FLJ59693 complete cds, moderately similar to Ankyrin repeat domain-containing protein 26.												0						TGATAAATGTCCATCTGTATC	0.393													19	20					0	0	0.812448	0	0
KCNJ12	3768	broad.mit.edu	37	17	21319632	21319632	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:21319632C>T	uc002gyv.1	+	3	1683	c.978C>T	c.(976-978)CGC>CGT	p.R326R		NM_021012	NP_066292	Q14500	IRK12_HUMAN	potassium inwardly-rectifying channel, subfamily	326	Cytoplasmic (By similarity).				blood circulation|muscle contraction|regulation of heart contraction|synaptic transmission	integral to membrane	inward rectifier potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(3)|skin(1)	4				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)	Dofetilide(DB00204)	GGGGTCACCGCTTTGAGCCCG	0.587										Prostate(3;0.18)			13	177					0	0	0.557998	0	0
KSR1	8844	broad.mit.edu	37	17	25936329	25936329	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:25936329G>A	uc010crg.2	+	17	2299	c.1854G>A	c.(1852-1854)GGG>GGA	p.G618G	KSR1_uc002gzm.2_Silent_p.G397G|KSR1_uc002gzn.2_5'Flank	NM_014238	NP_055053	Q8IVT5	KSR1_HUMAN	kinase suppressor of ras	753	Protein kinase.				Ras protein signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(1)	4	Lung NSC(42;0.00836)		BRCA - Breast invasive adenocarcinoma(3;0.00122)	UCEC - Uterine corpus endometrioid carcinoma (53;0.168)		GGCTGTTTGGGATCTCAGGCG	0.537													87	96					0	0	0.870114	0	0
FOXN1	8456	broad.mit.edu	37	17	26857782	26857782	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:26857782G>A	uc010crm.2	+	6	1044	c.846G>A	c.(844-846)ATG>ATA	p.M282I	FOXN1_uc002hbj.2_Missense_Mutation_p.M282I	NM_003593	NP_003584	O15353	FOXN1_HUMAN	forkhead box N1	282	Fork-head.				defense response|embryo development|epithelial cell proliferation|keratinocyte differentiation|organ morphogenesis|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|thymus development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	Lung NSC(42;0.00431)					TCATCTTCATGGCCCTTAAGA	0.537													11	29					0	0	0.479597	0	0
SPACA3	124912	broad.mit.edu	37	17	31324751	31324751	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:31324751C>T	uc002hhs.1	+	5	678	c.603C>T	c.(601-603)TGC>TGT	p.C201C	SPACA3_uc010cte.1_RNA	NM_173847	NP_776246	Q8IXA5	SACA3_HUMAN	sperm acrosome associated 3	201	Extracellular (Potential).				cell wall macromolecule catabolic process|defense response to Gram-positive bacterium|monocyte activation|peptidoglycan catabolic process|positive regulation of macrophage activation|positive regulation of phagocytosis|response to virus	acrosomal membrane|extracellular region|integral to membrane|lysosome	bacterial cell surface binding|lysozyme activity|protein binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.193)			GGCATCACTGCCAGGGAAAAG	0.537													15	70					0	0	0.575678	0	0
SLFN13	146857	broad.mit.edu	37	17	33771893	33771893	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:33771893C>T	uc002hjk.1	-	1	1137	c.807G>A	c.(805-807)TTG>TTA	p.L269L	SLFN13_uc010wch.1_Silent_p.L269L|SLFN13_uc002hjl.2_Silent_p.L269L|SLFN13_uc010ctt.2_Intron|SLFN13_uc002hjm.2_Intron	NM_144682	NP_653283	Q68D06	SLN13_HUMAN	schlafen family member 13	269						intracellular	ATP binding			ovary(1)|breast(1)	2				UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		TTACATTTTTCAAAGAGTCAG	0.403													65	53					0	0	0.870114	0	0
Unknown	0	broad.mit.edu	37	17	34236529	34236529	+	RNA	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:34236529G>A	uc010ctx.1	-	1		c.425C>T								Homo sapiens cDNA FLJ43944 fis, clone TESTI4014392.																		CTGCATGGTTGGAGAAAGTTC	0.483													5	19					0	0	0.184627	0	0
ACACA	31	broad.mit.edu	37	17	35536293	35536293	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:35536293G>A	uc002hnm.2	-	41	5067	c.4876C>T	c.(4876-4878)CCT>TCT	p.P1626S	ACACA_uc002hnk.2_Missense_Mutation_p.P1548S|ACACA_uc002hnl.2_Missense_Mutation_p.P1568S|ACACA_uc002hnn.2_Missense_Mutation_p.P1626S|ACACA_uc002hno.2_Missense_Mutation_p.P1663S|ACACA_uc010cuy.2_Intron	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	1626					acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	GAAGGCAGAGGGGGAGATGGA	0.453													29	33					0	0	0.779181	0	0
ACACA	31	broad.mit.edu	37	17	35562785	35562785	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:35562785A>G	uc002hnm.2	-	33	4030	c.3839T>C	c.(3838-3840)GTT>GCT	p.V1280A	ACACA_uc002hnk.2_Missense_Mutation_p.V1202A|ACACA_uc002hnl.2_Missense_Mutation_p.V1222A|ACACA_uc002hnn.2_Missense_Mutation_p.V1280A|ACACA_uc002hno.2_Missense_Mutation_p.V1317A|ACACA_uc010cuy.2_5'UTR	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	1280					acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	ATCCCTGGGAACCTGTAACTC	0.398													26	93					0	0	0.706142	0	0
ERBB2	2064	broad.mit.edu	37	17	37864760	37864760	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:37864760C>T	uc002hso.2	+	3	650	c.412C>T	c.(412-414)CGG>TGG	p.R138W	ERBB2_uc002hsm.2_Missense_Mutation_p.R108W|ERBB2_uc010cwa.2_Missense_Mutation_p.R123W|ERBB2_uc002hsp.2_5'UTR|ERBB2_uc010cwb.2_Missense_Mutation_p.R138W|ERBB2_uc010wek.1_Intron|ERBB2_uc002hsl.2_Missense_Mutation_p.R108W|ERBB2_uc002hsn.1_Missense_Mutation_p.R138W	NM_004448	NP_004439	P04626	ERBB2_HUMAN	erbB-2 isoform a	138	Extracellular (Potential).				cell proliferation|heart development|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of cell adhesion|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|protein autophosphorylation|regulation of angiogenesis|regulation of microtubule-based process|regulation of transcription, DNA-dependent|transcription, DNA-dependent|wound healing	integral to membrane|nucleus|perinuclear region of cytoplasm|receptor complex	ATP binding|DNA binding|epidermal growth factor receptor activity|ErbB-3 class receptor binding|identical protein binding|protein C-terminus binding|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(73)|central_nervous_system(16)|ovary(16)|stomach(14)|breast(9)|upper_aerodigestive_tract(5)|large_intestine(3)|liver(3)|endometrium(2)|skin(1)|pancreas(1)	143	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)	Ovarian(249;0.0547)|Colorectal(1115;0.234)	UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;9.42e-64)|all cancers(3;5.61e-57)|BRCA - Breast invasive adenocarcinoma(8;2.5e-45)|STAD - Stomach adenocarcinoma(3;9.03e-13)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|OV - Ovarian serous cystadenocarcinoma(8;0.0917)|LUSC - Lung squamous cell carcinoma(15;0.171)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0767)	Lapatinib(DB01259)|Letrozole(DB01006)|Trastuzumab(DB00072)	AGGAGGCCTGCGGGAGCTGCA	0.507		1	A|Mis|O		breast|ovarian|other tumour types|NSCLC|gastric					TCGA GBM(5;<1E-08)			15	28					0	0	0.539581	0	0
TNS4	84951	broad.mit.edu	37	17	38640799	38640799	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:38640799G>A	uc010cxb.2	-	6	1602	c.1438C>T	c.(1438-1440)CGA>TGA	p.R480*		NM_032865	NP_116254	Q8IZW8	TENS4_HUMAN	tensin 4 precursor	480	SH2.				apoptosis|protein localization	cytoplasm|cytoskeleton|focal adhesion	actin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(5;5.91e-05)			AAGGAGCCTCGGTATGAAGAG	0.582													5	11					0	0	0.248553	0	0
KCNH4	23415	broad.mit.edu	37	17	40315707	40315707	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:40315707G>A	uc002hzb.2	-	13	2727	c.2394C>T	c.(2392-2394)CCC>CCT	p.P798P		NM_012285	NP_036417	Q9UQ05	KCNH4_HUMAN	potassium voltage-gated channel, subfamily H,	798	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	two-component sensor activity|voltage-gated potassium channel activity			large_intestine(1)	1		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		AGCACCTGGGGGGGCCGTGAG	0.667													12	7					0	0	0.520397	0	0
STAT5B	6777	broad.mit.edu	37	17	40375412	40375412	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:40375412G>A	uc002hzh.2	-	5	707	c.538C>T	c.(538-540)CTG>TTG	p.L180L	STAT5B_uc002hzi.3_Silent_p.L180L	NM_012448	NP_036580	P51692	STA5B_HUMAN	signal transducer and activator of transcription	180					2-oxoglutarate metabolic process|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|fatty acid metabolic process|isoleucine metabolic process|JAK-STAT cascade involved in growth hormone signaling pathway|oxaloacetate metabolic process|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cytosol|nucleoplasm	calcium ion binding|glucocorticoid receptor binding|sequence-specific DNA binding transcription factor activity			ovary(3)|lung(2)|skin(1)	6		all_cancers(22;4.15e-07)|all_epithelial(22;2.83e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.135)	Dasatinib(DB01254)	TGGATCCTCAGGCTCTCCTGG	0.552													6	25					0	0	0.248553	0	0
BRCA1	672	broad.mit.edu	37	17	41244176	41244176	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:41244176G>A	uc002icq.2	-	10	3604	c.3372C>T	c.(3370-3372)TTC>TTT	p.F1124F	BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Silent_p.F1053F|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Silent_p.F1077F|BRCA1_uc002ict.2_Silent_p.F1124F|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron|BRCA1_uc002idd.2_Silent_p.F1124F|BRCA1_uc002ide.1_Silent_p.F955F|BRCA1_uc010cyy.1_Silent_p.F1124F|BRCA1_uc010whs.1_Silent_p.F1124F|BRCA1_uc010cyz.2_Silent_p.F1077F|BRCA1_uc010cza.2_Silent_p.F1098F|BRCA1_uc010wht.1_Silent_p.F828F	NM_007294	NP_009225	P38398	BRCA1_HUMAN	breast cancer 1, early onset isoform 1	1124					androgen receptor signaling pathway|apoptosis|cellular response to indole-3-methanol|chromosome segregation|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|DNA damage response, signal transduction resulting in induction of apoptosis|double-strand break repair via homologous recombination|fatty acid biosynthetic process|G2/M transition DNA damage checkpoint|negative regulation of centriole replication|negative regulation of fatty acid biosynthetic process|negative regulation of histone H3-K9 methylation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle arrest|positive regulation of DNA repair|positive regulation of histone acetylation|positive regulation of histone H3-K4 methylation|positive regulation of histone H4-K20 methylation|positive regulation of protein ubiquitination|positive regulation of transcription from RNA polymerase II promoter|postreplication repair|protein autoubiquitination|protein K6-linked ubiquitination|regulation of cell motility|regulation of cell proliferation|regulation of transcription from RNA polymerase III promoter|response to estrogen stimulus|response to ionizing radiation|substrate adhesion-dependent cell spreading	BRCA1-A complex|BRCA1-BARD1 complex|gamma-tubulin ring complex|nucleoplasm|plasma membrane|ribonucleoprotein complex|ruffle	androgen receptor binding|identical protein binding|protein binding|RNA binding|transcription coactivator activity|transcription regulatory region DNA binding|tubulin binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(24)|breast(21)|lung(4)|central_nervous_system(1)|endometrium(1)|urinary_tract(1)	52		Breast(137;0.000717)		BRCA - Breast invasive adenocarcinoma(366;0.126)		GATATGGAGAGAAATCTGTAT	0.373			D|Mis|N|F|S		ovarian	breast|ovarian		Homologous_recombination	Hereditary_Breast-Ovarian_Cancer_BRCA1_type	TCGA Ovarian(2;0.000030)			42	31					0	0	0.864702	0	0
MPP2	4355	broad.mit.edu	37	17	41958903	41958903	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:41958903A>C	uc010wip.1	-	7	928	c.871T>G	c.(871-873)TGC>GGC	p.C291G	MPP2_uc002ien.1_Missense_Mutation_p.C263G|MPP2_uc010wim.1_Missense_Mutation_p.C235G|MPP2_uc002ieo.1_Missense_Mutation_p.C246G|MPP2_uc010win.1_Missense_Mutation_p.C107G|MPP2_uc010wio.1_Missense_Mutation_p.C235G	NM_005374	NP_005365	Q14168	MPP2_HUMAN	palmitoylated membrane protein 2	270	SH3.				signal transduction	cell surface|integral to plasma membrane|membrane fraction	guanylate kinase activity				0		Breast(137;0.00314)		BRCA - Breast invasive adenocarcinoma(366;0.12)		GCTTCCTTGCAGGGGATGAGG	0.597													16	44					0	0	0.539581	0	0
PLCD3	113026	broad.mit.edu	37	17	43196224	43196225	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:43196224_43196225GG>AA	uc002iib.2	-	5	984_985	c.870_871CC>TT	c.(868-873)GCCCGC>GCTTGC	p.R291C		NM_133373	NP_588614	Q8N3E9	PLCD3_HUMAN	phospholipase C delta 3	291					intracellular signal transduction|lipid catabolic process	cleavage furrow|cytoplasm|membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			breast(2)|lung(1)	3					Phosphatidylserine(DB00144)	TGCTGGGCGCGGGCCAGTGTGG	0.431													7	10					0	0	0.115264	0	0
B4GALNT2	124872	broad.mit.edu	37	17	47219493	47219493	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:47219493G>A	uc002ion.2	+	3	551	c.492G>A	c.(490-492)GTG>GTA	p.V164V	B4GALNT2_uc010wlt.1_Silent_p.V78V|B4GALNT2_uc010wlu.1_Silent_p.V104V	NM_153446	NP_703147	Q8NHY0	B4GN2_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 2	164	Lumenal (Potential).				lipid glycosylation|negative regulation of cell-cell adhesion|UDP-N-acetylgalactosamine metabolic process	integral to Golgi membrane	acetylgalactosaminyltransferase activity			large_intestine(1)|ovary(1)	2			all cancers(6;0.000316)			TCCCAGCGGTGAAAGCGAGGA	0.512													22	83					0	0	0.681144	0	0
RSAD1	55316	broad.mit.edu	37	17	48557289	48557289	+	Silent	SNP	C	T	T	rs11555806		TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:48557289C>T	uc002iqw.1	+	3	374	c.318C>T	c.(316-318)CCC>CCT	p.P106P	RSAD1_uc010wmp.1_Silent_p.P106P|RSAD1_uc010wmq.1_Intron	NM_018346	NP_060816	Q9HA92	RSAD1_HUMAN	radical S-adenosyl methionine domain containing	106					porphyrin biosynthetic process	mitochondrion	4 iron, 4 sulfur cluster binding|coproporphyrinogen oxidase activity|metal ion binding				0	Breast(11;1.93e-18)		BRCA - Breast invasive adenocarcinoma(22;1.55e-09)			TAGCCAGTCCCCACACGGTGG	0.607											OREG0024566	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	43					0	0	0.457914	0	0
CACNA1G	8913	broad.mit.edu	37	17	48649268	48649268	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:48649268G>A	uc002irk.1	+	5	988	c.616G>A	c.(616-618)GAT>AAT	p.D206N	CACNA1G_uc002iri.1_Missense_Mutation_p.D206N|CACNA1G_uc002irj.1_Missense_Mutation_p.D206N|CACNA1G_uc002irl.1_Missense_Mutation_p.D206N|CACNA1G_uc002irm.1_Missense_Mutation_p.D206N|CACNA1G_uc002irn.1_Missense_Mutation_p.D206N|CACNA1G_uc002iro.1_Missense_Mutation_p.D206N|CACNA1G_uc002irp.1_Missense_Mutation_p.D206N|CACNA1G_uc002irq.1_Missense_Mutation_p.D206N|CACNA1G_uc002irr.1_Missense_Mutation_p.D206N|CACNA1G_uc002irs.1_Missense_Mutation_p.D206N|CACNA1G_uc002irt.1_Missense_Mutation_p.D206N|CACNA1G_uc002irv.1_Missense_Mutation_p.D206N|CACNA1G_uc002irw.1_Missense_Mutation_p.D206N|CACNA1G_uc002iru.1_Missense_Mutation_p.D206N|CACNA1G_uc002irx.1_Missense_Mutation_p.D119N|CACNA1G_uc002iry.1_Missense_Mutation_p.D119N|CACNA1G_uc002irz.1_Missense_Mutation_p.D119N|CACNA1G_uc002isa.1_Missense_Mutation_p.D119N|CACNA1G_uc002isb.1_Missense_Mutation_p.D119N|CACNA1G_uc002isc.1_Missense_Mutation_p.D119N|CACNA1G_uc002isd.1_Missense_Mutation_p.D119N|CACNA1G_uc002ise.1_Missense_Mutation_p.D119N|CACNA1G_uc002isf.1_Missense_Mutation_p.D119N|CACNA1G_uc002isg.1_Missense_Mutation_p.D119N|CACNA1G_uc002ish.1_Missense_Mutation_p.D119N|CACNA1G_uc002isi.1_Missense_Mutation_p.D119N	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	206	I.|Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	GTTGCTGCTGGATACGCTGCC	0.647													20	54					0	0	0.717897	0	0
STXBP4	252983	broad.mit.edu	37	17	53237185	53237185	+	Silent	SNP	C	T	T	rs115962086	byFrequency	TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:53237185C>T	uc002iuf.1	+	18	1782	c.1575C>T	c.(1573-1575)ATC>ATT	p.I525I	STXBP4_uc010dcd.1_Silent_p.I503I	NM_178509	NP_848604	Q6ZWJ1	STXB4_HUMAN	syntaxin binding protein 4	525	WW.					cytoplasm	calcium ion binding			ovary(1)	1						CATCCTGGATCCATCCCGTGA	0.433													16	49					0	0	0.608945	0	0
MRPS23	51649	broad.mit.edu	37	17	55926750	55926751	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:55926750_55926751GG>AA	uc002ivc.2	-	2	93_94	c.65_66CC>TT	c.(64-66)GCC>GTT	p.A22V		NM_016070	NP_057154	Q9Y3D9	RT23_HUMAN	mitochondrial ribosomal protein S23	22					translation	intermediate filament cytoskeleton|mitochondrion|nuclear membrane|ribosome	structural constituent of ribosome				0	Breast(9;8.75e-08)					TCAGCACCCCGGCCCGAACCAG	0.579													13	31					0	0	0.115264	0	0
MPO	4353	broad.mit.edu	37	17	56352921	56352921	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:56352921G>A	uc002ivu.1	-	8	1524	c.1347C>T	c.(1345-1347)ATC>ATT	p.I449I		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase	449					anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	TGGCCCCCACGATCTTCCGGG	0.418													17	36					0	0	0.575678	0	0
TANC2	26115	broad.mit.edu	37	17	61499137	61499137	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:61499137G>A	uc002jal.3	+	25	5817	c.5794G>A	c.(5794-5796)GGA>AGA	p.G1932R	TANC2_uc010wpe.1_3'UTR|TANC2_uc002jao.3_Missense_Mutation_p.G1043R	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1932							binding			ovary(2)	2						CGGGTCTCGTGGAGACCTCTT	0.532													9	56					0	0	0.387290	0	0
ICAM2	3384	broad.mit.edu	37	17	62081230	62081230	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:62081230G>A	uc002jdu.3	-	3	655	c.423C>T	c.(421-423)CCC>CCT	p.P141P	C17orf72_uc002jdt.3_3'UTR|C17orf72_uc010wpu.1_3'UTR|C17orf72_uc010wpv.1_3'UTR|C17orf72_uc010wpw.1_3'UTR|ICAM2_uc002jdw.3_Silent_p.P141P|ICAM2_uc010ded.2_Silent_p.P141P|ICAM2_uc002jdx.3_Silent_p.P141P|ICAM2_uc002jdv.3_Silent_p.P141P	NM_000873	NP_000864	P13598	ICAM2_HUMAN	intercellular adhesion molecule 2 precursor	141	Ig-like C2-type 2.|Extracellular (Potential).				cell-cell adhesion|regulation of immune response	integral to plasma membrane	integrin binding			ovary(1)	1						GGCTGTCCAGGGGCTCCACGG	0.612													26	19					0	0	0.750413	0	0
ABCA6	23460	broad.mit.edu	37	17	67129868	67129868	+	Silent	SNP	T	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:67129868T>C	uc002jhw.1	-	6	880	c.705A>G	c.(703-705)GTA>GTG	p.V235V		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	235	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					ATATAAAATATACAAGTGGGG	0.303													10	20					0	0	0.361761	0	0
TNRC6C	57690	broad.mit.edu	37	17	76083070	76083070	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:76083070C>T	uc002jud.2	+	14	4298	c.3698C>T	c.(3697-3699)TCG>TTG	p.S1233L	TNRC6C_uc002juf.2_Missense_Mutation_p.S1230L	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	1233	Pro-rich.				gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			GCAGGCAAATCGGCCATGGAC	0.657													12	37					0	0	0.457914	0	0
DNAH17	8632	broad.mit.edu	37	17	76503747	76503747	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:76503747C>T	uc010wtu.1	-	2	429	c.252G>A	c.(250-252)CTG>CTA	p.L84L						full-length cDNA clone CS0DJ002YI14 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human).											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			TGGACATCATCAGGTTCTGCA	0.607													6	27					0	0	0.335167	0	0
DNAH17	8632	broad.mit.edu	37	17	76548870	76548870	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:76548870C>T	uc002jvv.1	-	11	1408	c.1302G>A	c.(1300-1302)AAG>AAA	p.K434K						RecName: Full=Dynein heavy chain 17, axonemal; AltName: Full=Axonemal beta dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain-like protein 1; AltName: Full=Axonemal dynein heavy chain-like protein 1; AltName: Full=Dynein light chain 2, axonemal;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			ATTCTACTGCCTTCACTATAG	0.393													18	88					0	0	0.539581	0	0
CANT1	124583	broad.mit.edu	37	17	76993389	76993389	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:76993389G>A	uc002jwn.2	-	4	755	c.316C>T	c.(316-318)CGA>TGA	p.R106*	CANT1_uc002jwk.2_Nonsense_Mutation_p.R106*|CANT1_uc002jwj.2_Nonsense_Mutation_p.R106*|CANT1_uc002jwl.2_RNA|CANT1_uc002jwm.1_5'Flank	NM_001159772	NP_001153244	Q8WVQ1	CANT1_HUMAN	calcium activated nucleotidase 1	106	Lumenal (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	endoplasmic reticulum membrane|Golgi cisterna membrane|integral to membrane	calcium ion binding|nucleoside-diphosphatase activity|signal transducer activity				0			BRCA - Breast invasive adenocarcinoma(99;0.0362)|OV - Ovarian serous cystadenocarcinoma(97;0.139)			ACTGCGATTCGATACCGAATC	0.567			T	ETV4	prostate								55	127					0	0	0.870114	0	0
C17orf90	339229	broad.mit.edu	37	17	79632478	79632478	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr17:79632478G>A	uc002kba.2	-	2	208	c.197C>T	c.(196-198)TCC>TTC	p.S66F	C17orf90_uc002kbb.2_3'UTR|CCDC137_uc002kbc.3_5'Flank|CCDC137_uc002kbd.2_5'Flank	NM_001039842	NP_001034931	Q5BKU9	CQ090_HUMAN	hypothetical protein LOC339229	66											0	all_neural(118;0.0878)|all_lung(278;0.23)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			ACCTGCTTGGGAGCCCACCTC	0.642													7	47					0	0	0.278610	0	0
DLGAP1	9229	broad.mit.edu	37	18	3581882	3581882	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr18:3581882G>A	uc002kmf.2	-	5	2023	c.1956C>T	c.(1954-1956)ATC>ATT	p.I652I	DLGAP1_uc010wyz.1_Silent_p.I652I|DLGAP1_uc002kme.1_Silent_p.I350I|DLGAP1_uc010dkn.2_Silent_p.I360I|DLGAP1_uc010wyw.1_Silent_p.I358I|DLGAP1_uc010wyx.1_Silent_p.I374I|DLGAP1_uc010wyy.1_Silent_p.I336I|DLGAP1_uc002kmg.2_Silent_p.I350I	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	652	Interaction with DYL2 (By similarity).				synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				CCTGTATCCCGATAGACAGGC	0.318													24	43					0	0	0.740014	0	0
LAMA1	284217	broad.mit.edu	37	18	6966156	6966156	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr18:6966156G>A	uc002knm.2	-	49	7134	c.7040C>T	c.(7039-7041)TCA>TTA	p.S2347L	LAMA1_uc002knl.2_5'Flank|LAMA1_uc010wzj.1_Missense_Mutation_p.S1823L	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2347	Laminin G-like 2.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGTGCCGTATGAACCCAGGTA	0.428													11	18					0	0	0.500413	0	0
APCDD1	147495	broad.mit.edu	37	18	10471849	10471849	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr18:10471849C>T	uc002kom.3	+	3	919	c.565C>T	c.(565-567)CTC>TTC	p.L189F		NM_153000	NP_694545	Q8J025	APCD1_HUMAN	adenomatosis polyposis coli down-regulated 1	189	Extracellular (Potential).				hair follicle development|negative regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to plasma membrane	Wnt-protein binding				0				READ - Rectum adenocarcinoma(15;0.08)		GGCCTATGACCTCTGGCGAGA	0.622													39	75					0	0	0.870114	0	0
DSC2	1824	broad.mit.edu	37	18	28651784	28651784	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr18:28651784G>A	uc002kwl.3	-	13	2366	c.1912C>T	c.(1912-1914)CAG>TAG	p.Q638*	DSC2_uc002kwk.3_Nonsense_Mutation_p.Q638*	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	638	Extracellular (Potential).|Cadherin 5.		Q -> H.		homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			GGATCATTCTGATAGGAAAGA	0.348													17	23					0	0	0.624587	0	0
DSC1	1823	broad.mit.edu	37	18	28728554	28728554	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr18:28728554G>A	uc002kwn.2	-	6	941	c.679C>T	c.(679-681)CCT>TCT	p.P227S	DSC1_uc002kwm.2_Missense_Mutation_p.P227S	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	227	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			ATGATCAAAGGGAGTGGATAT	0.378													24	48					0	0	0.693898	0	0
DSG1	1828	broad.mit.edu	37	18	28926037	28926037	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr18:28926037G>A	uc002kwp.2	+	14	2188	c.1976G>A	c.(1975-1977)GGA>GAA	p.G659E	DSG1_uc010xbp.1_Missense_Mutation_p.G18E	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	659	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			CTAACAGAGGGAGTTAAAACT	0.383													16	27					0	0	0.520397	0	0
DSG4	147409	broad.mit.edu	37	18	28968463	28968463	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr18:28968463G>A	uc002kwq.2	+	4	485	c.350G>A	c.(349-351)AGA>AAA	p.R117K	DSG4_uc002kwr.2_Missense_Mutation_p.R117K	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	117	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GTGGTAGACAGAGAAATAACT	0.358													11	27					0	0	0.479597	0	0
RNF165	494470	broad.mit.edu	37	18	44030274	44030274	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr18:44030274C>T	uc002lcb.1	+	5	682	c.631C>T	c.(631-633)CGA>TGA	p.R211*	RNF165_uc002lby.1_Nonsense_Mutation_p.R144*|RNF165_uc010dnn.1_Nonsense_Mutation_p.R7*	NM_152470	NP_689683	Q6ZSG1	RN165_HUMAN	ring finger protein 165	211							zinc ion binding				0				READ - Rectum adenocarcinoma(1;0.0873)		CCATGAAATCCGAAACTACCC	0.517													16	30					0	0	0.592651	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555079	44555079	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr18:44555079C>T	uc010xdb.1	-	1	1371	c.1135G>A	c.(1135-1137)GAG>AAG	p.E379K	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	379	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						TTGTCTTTCTCTGTGCGGTAC	0.557													19	714					0	0	0.575678	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555292	44555292	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr18:44555292C>T	uc010xdb.1	-	1	1158	c.922G>A	c.(922-924)GAA>AAA	p.E308K	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	308	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						AAAGCAGCTTCCTCCTGGAGC	0.637													11	293					0	0	0.435327	0	0
HDHD2	84064	broad.mit.edu	37	18	44635148	44635148	+	Nonsense_Mutation	SNP	G	A	A	rs141476363	byFrequency	TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr18:44635148G>A	uc002lcs.2	-	7	818	c.685C>T	c.(685-687)CGA>TGA	p.R229*	HDHD2_uc002lct.2_Nonsense_Mutation_p.R139*	NM_032124	NP_115500	Q9H0R4	HDHD2_HUMAN	haloacid dehalogenase-like hydrolase domain	229							hydrolase activity				0						TCTGATGCTCGATATTTCCCT	0.443													11	15					0	0	0.411799	0	0
DCC	1630	broad.mit.edu	37	18	51013265	51013265	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr18:51013265C>T	uc002lfe.1	+	26	4422	c.3835C>T	c.(3835-3837)CTC>TTC	p.L1279F	DCC_uc010dpf.1_Missense_Mutation_p.L914F	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1279	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		GCAGTTCACTCTCCGGCCTGT	0.542													44	65					0	0	0.870114	0	0
C18orf26	284254	broad.mit.edu	37	18	52265112	52265112	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr18:52265112G>A	uc002lfq.1	+	3	415	c.369G>A	c.(367-369)GTG>GTA	p.V123V	C18orf26_uc002lfp.1_Silent_p.V71V	NM_173629	NP_775900	Q8N1N2	CR026_HUMAN	hypothetical protein LOC284254	123	Helical; (Potential).					integral to membrane					0				Colorectal(16;0.0193)|READ - Rectum adenocarcinoma(59;0.178)		TAGCCTGTGTGATAATGACAG	0.383													31	52					0	0	0.827153	0	0
TCF4	6925	broad.mit.edu	37	18	53128337	53128337	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr18:53128337C>T	uc002lfz.2	-	5	829	c.217G>A	c.(217-219)GAT>AAT	p.D73N	TCF4_uc002lfy.2_Missense_Mutation_p.D31N|TCF4_uc010xdx.1_Missense_Mutation_p.D49N|TCF4_uc010dph.1_Missense_Mutation_p.D73N|TCF4_uc010xdy.1_Missense_Mutation_p.D49N|TCF4_uc002lga.2_Missense_Mutation_p.D175N|TCF4_uc010dpi.2_Missense_Mutation_p.D73N|TCF4_uc002lgc.3_5'UTR	NM_003199	NP_003190	P15884	ITF2_HUMAN	transcription factor 4 isoform b	73	Essential for MYOD1 inhibition (By similarity).				positive regulation of neuron differentiation|protein-DNA complex assembly|transcription initiation from RNA polymerase II promoter	transcription factor complex	E-box binding|protein C-terminus binding|protein heterodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding RNA polymerase recruiting transcription factor activity|TFIIB-class binding transcription factor activity|TFIIB-class transcription factor binding			ovary(1)|lung(1)	2				Colorectal(16;0.00108)|READ - Rectum adenocarcinoma(59;0.0649)|COAD - Colon adenocarcinoma(17;0.0718)		GGAGTCCCATCTCCATAGTTC	0.388													10	14					0	0	0.335167	0	0
ST8SIA3	51046	broad.mit.edu	37	18	55024677	55024677	+	Missense_Mutation	SNP	G	A	A	rs145545626		TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr18:55024677G>A	uc002lgn.2	+	3	1193	c.836G>A	c.(835-837)GGA>GAA	p.G279E		NM_015879	NP_056963	O43173	SIA8C_HUMAN	ST8 alpha-N-acetyl-neuraminide	279	Lumenal (Potential).				glycosphingolipid biosynthetic process|N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity	p.G279E(1)		breast(1)|skin(1)	2				READ - Rectum adenocarcinoma(59;0.19)|Colorectal(16;0.205)		GCTTGGCCGGGAAATATAATG	0.408													40	58					0	0	0.870114	0	0
ALPK2	115701	broad.mit.edu	37	18	56203089	56203089	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr18:56203089C>T	uc002lhj.3	-	5	4544	c.4330G>A	c.(4330-4332)GAA>AAA	p.E1444K	ALPK2_uc002lhk.1_Missense_Mutation_p.E775K	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1444							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						ATTTCCGCTTCGTGGCCCATG	0.512													11	24					0	0	0.479597	0	0
CCBE1	147372	broad.mit.edu	37	18	57107031	57107031	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr18:57107031C>G	uc002lib.2	-	8	863	c.793G>C	c.(793-795)GGA>CGA	p.G265R	CCBE1_uc010dpq.2_Intron|CCBE1_uc002lia.2_Missense_Mutation_p.G118R	NM_133459	NP_597716	Q6UXH8	CCBE1_HUMAN	collagen and calcium binding EGF domains 1	265	Collagen-like 1.				lymphangiogenesis|sprouting angiogenesis|venous blood vessel morphogenesis	collagen	calcium ion binding			skin(2)|ovary(1)	3		Colorectal(73;0.175)				CCTGGGCTTCCCTTTGGTCCT	0.587													3	8					0	0	0.184627	0	0
ZCCHC2	54877	broad.mit.edu	37	18	60242640	60242640	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr18:60242640C>T	uc002lip.3	+	13	3326	c.3326C>T	c.(3325-3327)CCT>CTT	p.P1109L	ZCCHC2_uc002lio.2_RNA|ZCCHC2_uc002liq.2_Missense_Mutation_p.P579L	NM_017742	NP_060212	Q9C0B9	ZCHC2_HUMAN	zinc finger, CCHC domain containing 2	1109					cell communication	cytoplasm	nucleic acid binding|phosphatidylinositol binding|zinc ion binding			lung(1)|prostate(1)	2						AGATTCTATCCTGTATATCCA	0.493													8	12					0	0	0.335167	0	0
SERPINB4	6318	broad.mit.edu	37	18	61310800	61310800	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr18:61310800G>A	uc002ljf.2	-	2	98	c.12C>T	c.(10-12)CTC>CTT	p.L4L	SERPINB4_uc002lje.2_Silent_p.L4L|SERPINB4_uc002ljg.2_Intron	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	4					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						TGGCTTCACTGAGTGAATTCA	0.388													52	92					0	0	0.870114	0	0
BTBD2	55643	broad.mit.edu	37	19	1986899	1986899	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:1986899A>C	uc002lup.1	-	8	1346	c.1346T>G	c.(1345-1347)TTC>TGC	p.F449C	BTBD2_uc002luo.1_Missense_Mutation_p.F128C	NM_017797	NP_060267	Q9BX70	BTBD2_HUMAN	BTB (POZ) domain containing 2	449						cytoplasmic mRNA processing body	protein binding			ovary(1)|skin(1)	2		Ovarian(11;2.11e-07)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CATGACGCGGAAGGTGCTGGC	0.642													5	48					0	0	0.184627	0	0
FSD1	79187	broad.mit.edu	37	19	4311969	4311969	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:4311969C>T	uc002lzy.2	+	7	774	c.621C>T	c.(619-621)TTC>TTT	p.F207F	FSD1_uc002lzz.2_Silent_p.F207F|FSD1_uc002maa.2_Silent_p.F20F	NM_024333	NP_077309	Q9BTV5	FSD1_HUMAN	fibronectin type III and SPRY domain containing	207	Fibronectin type-III.				cell division|mitosis	cleavage furrow|microtubule|microtubule organizing center|nucleus				skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.034)|STAD - Stomach adenocarcinoma(1328;0.18)		GGACCAACTTCGAGGGCCCGC	0.622													18	11					0	0	0.557998	0	0
ARRDC5	645432	broad.mit.edu	37	19	4891357	4891357	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:4891357G>A	uc002mbm.2	-	3	730	c.730C>T	c.(730-732)CGG>TGG	p.R244W		NM_001080523	NP_001073992	A6NEK1	ARRD5_HUMAN	arrestin domain containing 5	244					signal transduction						0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0257)		CTGTCCAGCCGAGACCGCCGC	0.592													9	16					0	0	0.361761	0	0
UHRF1	29128	broad.mit.edu	37	19	4954832	4954832	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:4954832C>T	uc002mbo.2	+	17	2297	c.2129C>T	c.(2128-2130)CCG>CTG	p.P710L	UHRF1_uc010xik.1_RNA|UHRF1_uc010duf.2_RNA|UHRF1_uc002mbp.2_Missense_Mutation_p.P723L	NM_001048201	NP_001041666	Q96T88	UHRF1_HUMAN	ubiquitin-like with PHD and ring finger domains	710					cell cycle|cell proliferation|DNA repair|regulation of transcription from RNA polymerase II promoter	nucleus	acid-amino acid ligase activity|methyl-CpG binding|methylated histone residue binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0276)		AGCGGCAGCCCGGTAGGCTCG	0.453													7	26					0	0	0.387290	0	0
SAFB	6294	broad.mit.edu	37	19	5667859	5667859	+	Silent	SNP	C	A	A	rs141149674	byFrequency	TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:5667859C>A	uc002mcf.2	+	20	2633	c.2580C>A	c.(2578-2580)TCC>TCA	p.S860S	SAFB_uc002mcg.2_Silent_p.S862S|SAFB_uc002mce.3_Silent_p.S861S|SAFB_uc010xir.1_Silent_p.S859S|SAFB_uc010xis.1_Silent_p.S793S|SAFB_uc010xit.1_Silent_p.S704S|SAFB_uc010xiu.1_Silent_p.S661S	NM_002967	NP_002958	Q15424	SAFB1_HUMAN	scaffold attachment factor B	860	Interaction with SAFB2.|Gly-rich.				chromatin organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	double-stranded DNA binding|nucleotide binding|protein binding|RNA binding			ovary(1)|liver(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;0.000222)		CCGGTCACTCCGGGCCTGGCC	0.607													10	51					0.00185496	0.00185987	0.435327	1	0
CD209	30835	broad.mit.edu	37	19	7810561	7810561	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:7810561G>A	uc002mht.2	-	4	658	c.591C>T	c.(589-591)ACC>ACT	p.T197T	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Silent_p.T173T|CD209_uc002mhr.2_Silent_p.T173T|CD209_uc002mhs.2_Silent_p.T173T|CD209_uc002mhu.2_Intron|CD209_uc010dvq.2_Silent_p.T197T|CD209_uc002mhq.2_Silent_p.T197T|CD209_uc002mhv.2_Silent_p.T173T|CD209_uc002mhx.2_Silent_p.T153T|CD209_uc002mhw.2_Intron|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	197	Extracellular (Probable).|5.|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						CCTTCAGCCGGGTCAGCTCCT	0.567													4	80					0	0	0.217242	0	0
CD209	30835	broad.mit.edu	37	19	7810698	7810698	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:7810698A>G	uc002mht.2	-	4	521	c.454T>C	c.(454-456)TGG>CGG	p.W152R	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Missense_Mutation_p.W128R|CD209_uc002mhr.2_Missense_Mutation_p.W128R|CD209_uc002mhs.2_Missense_Mutation_p.W128R|CD209_uc002mhu.2_Missense_Mutation_p.W152R|CD209_uc010dvq.2_Missense_Mutation_p.W152R|CD209_uc002mhq.2_Missense_Mutation_p.W152R|CD209_uc002mhv.2_Missense_Mutation_p.W128R|CD209_uc002mhx.2_Missense_Mutation_p.W108R|CD209_uc002mhw.2_Missense_Mutation_p.W108R|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	152	Extracellular (Probable).|7 X approximate tandem repeats.|3.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						GCCTTCAGCCAGGTCAGCTCC	0.557													5	141					0	0	0.217242	0	0
MYO1F	4542	broad.mit.edu	37	19	8606866	8606866	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:8606866C>T	uc002mkg.2	-	15	1648	c.1534G>A	c.(1534-1536)GAC>AAC	p.D512N		NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	512	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						CCGCTGACGTCGTAGGAGACC	0.612													6	29					0	0	0.217242	0	0
MUC16	94025	broad.mit.edu	37	19	9057066	9057066	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:9057066G>A	uc002mkp.2	-	3	30584	c.30380C>T	c.(30379-30381)TCC>TTC	p.S10127F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10129	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTAGCCTTGGATGGCTCCGA	0.468													4	20					0	0	0.150653	0	0
MUC16	94025	broad.mit.edu	37	19	9064403	9064403	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:9064403C>T	uc002mkp.2	-	3	23247	c.23043G>A	c.(23041-23043)GTG>GTA	p.V7681V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7683	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGTTTCTTTCACAAAGGGAG	0.547													8	35					0	0	0.335167	0	0
MUC16	94025	broad.mit.edu	37	19	9069660	9069660	+	Missense_Mutation	SNP	G	A	A	rs74872724	byFrequency	TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:9069660G>A	uc002mkp.2	-	3	17990	c.17786C>T	c.(17785-17787)TCC>TTC	p.S5929F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5931	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGCACTGGGGAAGAAGGAGA	0.498													21	14					0	0	0.667858	0	0
MUC16	94025	broad.mit.edu	37	19	9082794	9082794	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:9082794G>A	uc002mkp.2	-	1	9225	c.9021C>T	c.(9019-9021)ACC>ACT	p.T3007T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3008	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATGCAAGAGAGGTCGATGTCA	0.488													7	56					0	0	0.307466	0	0
MUC16	94025	broad.mit.edu	37	19	9084492	9084492	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:9084492G>A	uc002mkp.2	-	1	7527	c.7323C>T	c.(7321-7323)TCC>TCT	p.S2441S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2441	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CACCCACATTGGAGCCCCCAT	0.498													6	22					0	0	0.217242	0	0
MUC16	94025	broad.mit.edu	37	19	9085237	9085237	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:9085237G>A	uc002mkp.2	-	1	6782	c.6578C>T	c.(6577-6579)TCC>TTC	p.S2193F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2193	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CATTCTAAAGGAAACCAAAGA	0.468													3	19					0	0	0.150653	0	0
MUC16	94025	broad.mit.edu	37	19	9086687	9086687	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:9086687C>T	uc002mkp.2	-	1	5332	c.5128G>A	c.(5128-5130)GAA>AAA	p.E1710K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1710	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGACTCCTTCAGTAGTTGAC	0.488													50	24					0	0	0.870114	0	0
MUC16	94025	broad.mit.edu	37	19	9089550	9089550	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:9089550C>T	uc002mkp.2	-	1	2469	c.2265G>A	c.(2263-2265)GGG>GGA	p.G755G		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	755	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTTCAGGAGTCCCTGTGGTAA	0.473													51	41					0	0	0.870114	0	0
OR7G1	125962	broad.mit.edu	37	19	9225778	9225778	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:9225778A>G	uc002mks.1	-	1	662	c.662T>C	c.(661-663)ATA>ACA	p.I221T		NM_001005192	NP_001005192	Q8NGA0	OR7G1_HUMAN	olfactory receptor, family 7, subfamily G,	221	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						AGAGGTGACTATTTGAGAATA	0.408													29	22					0	0	0.788014	0	0
ZNF560	147741	broad.mit.edu	37	19	9578939	9578939	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:9578939G>A	uc002mlp.1	-	10	894	c.684C>T	c.(682-684)TGC>TGT	p.C228C	ZNF560_uc010dwr.1_Silent_p.C122C	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	228					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						TGGTCTTAAGGCATGGATGTT	0.373													13	50					0	0	0.479597	0	0
ELAVL3	1995	broad.mit.edu	37	19	11569051	11569051	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:11569051C>T	uc002mry.1	-	5	918	c.538G>A	c.(538-540)GAA>AAA	p.E180K	ELAVL3_uc002mrx.1_Missense_Mutation_p.E180K	NM_001420	NP_001411	Q14576	ELAV3_HUMAN	ELAV-like protein 3 isoform 1	180	RRM 2.				cell differentiation|nervous system development		AU-rich element binding|nucleotide binding			ovary(1)|breast(1)|skin(1)	3						ATAGCCTCTTCGGCCTCAATC	0.597													6	48					0	0	0.307466	0	0
TMEM38A	79041	broad.mit.edu	37	19	16791364	16791364	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:16791364C>T	uc002nes.2	+	3	529	c.438C>T	c.(436-438)TTC>TTT	p.F146F		NM_024074	NP_076979	Q9H6F2	TM38A_HUMAN	transmembrane protein 38A	146	Helical; (Potential).					integral to membrane|nuclear membrane|sarcoplasmic reticulum membrane	potassium channel activity			central_nervous_system(2)|ovary(1)	3						ACGGGTGGTTCGTCATGATTG	0.522													33	28					0	0	0.788014	0	0
CPAMD8	27151	broad.mit.edu	37	19	17068694	17068694	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:17068694C>T	uc002nfb.2	-	19	2418	c.2386G>A	c.(2386-2388)GAA>AAA	p.E796K		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	749						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						ATCCATGTTTCGGGGAAGAAA	0.393													86	67					0	0	0.870114	0	0
UNC13A	23025	broad.mit.edu	37	19	17780454	17780454	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:17780454G>A	uc002nhd.2	-	6	566	c.566C>T	c.(565-567)TCC>TTC	p.S189F		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	101					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						GATGACCTGGGAGTCCAGCGT	0.617													3	9					0	0	0.150653	0	0
SFRS14	10147	broad.mit.edu	37	19	19120938	19120938	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:19120938G>A	uc002nkx.2	-	5	2210	c.2064C>T	c.(2062-2064)CTC>CTT	p.L688L	SFRS14_uc002nkz.1_Silent_p.L702L|SFRS14_uc002nla.1_Silent_p.L688L|SFRS14_uc002nlb.2_Silent_p.L688L|SFRS14_uc010xqk.1_Silent_p.L457L	NM_014884	NP_055699	Q8IX01	SUGP2_HUMAN	splicing factor, arginine/serine-rich 14	688					mRNA processing|RNA splicing	nucleus	RNA binding				0			OV - Ovarian serous cystadenocarcinoma(5;3.05e-05)|Epithelial(12;0.00161)			TCCAGCCCCGGAGCCCTTGAG	0.667													36	27					0	0	0.847076	0	0
SFRS14	10147	broad.mit.edu	37	19	19120956	19120956	+	Silent	SNP	G	A	A	rs139001412		TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:19120956G>A	uc002nkx.2	-	5	2192	c.2046C>T	c.(2044-2046)CTC>CTT	p.L682L	SFRS14_uc002nkz.1_Silent_p.L696L|SFRS14_uc002nla.1_Silent_p.L682L|SFRS14_uc002nlb.2_Silent_p.L682L|SFRS14_uc010xqk.1_Silent_p.L451L	NM_014884	NP_055699	Q8IX01	SUGP2_HUMAN	splicing factor, arginine/serine-rich 14	682					mRNA processing|RNA splicing	nucleus	RNA binding				0			OV - Ovarian serous cystadenocarcinoma(5;3.05e-05)|Epithelial(12;0.00161)			GAGCACGGAGGAGCCCCCGCC	0.662													10	54					0	0	0.361761	0	0
ZNF714	148206	broad.mit.edu	37	19	21300028	21300028	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:21300028C>T	uc002npo.3	+	6	921	c.561C>T	c.(559-561)ACC>ACT	p.T187T	ZNF714_uc002npl.2_Silent_p.T32T|ZNF714_uc010ecp.1_Silent_p.T138T|ZNF714_uc002npn.2_RNA	NM_182515	NP_872321	Q96N38	ZN714_HUMAN	zinc finger protein 714	187	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGTTCTCAACCCTTACTAGAC	0.368													23	31					0	0	0.667858	0	0
ZNF208	7757	broad.mit.edu	37	19	22156453	22156453	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:22156453G>A	uc002nqp.2	-	4	1532	c.1383C>T	c.(1381-1383)GGC>GGT	p.G461G	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_RNA	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				ACATACTAAAGCCTTTGCCAC	0.383													3	39					0	0	0.115264	0	0
Unknown	0	broad.mit.edu	37	19	23159858	23159858	+	RNA	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:23159858G>A	uc002nqy.1	-	3		c.292C>T			uc002nqz.1_Missense_Mutation_p.S30F					Homo sapiens zinc finger protein 117, mRNA (cDNA clone IMAGE:40112371).																		TTTTTGGAAAGAATCTTCTCT	0.323													4	2					0	0	0.217242	0	0
ZNF30	90075	broad.mit.edu	37	19	35434914	35434914	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:35434914A>T	uc010edp.1	+	5	1422	c.1044A>T	c.(1042-1044)GAA>GAT	p.E348D	ZNF30_uc002nxf.2_Missense_Mutation_p.E267D|ZNF30_uc010edq.1_Missense_Mutation_p.E349D|ZNF30_uc010edr.1_Missense_Mutation_p.E349D	NM_194325	NP_919306	P17039	ZNF30_HUMAN	zinc finger protein 30 isoform b	348	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_lung(56;8.38e-08)|Lung NSC(56;1.31e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)	GBM - Glioblastoma multiforme(1328;0.0265)		AATGTAAGGAATGTGGAAAGG	0.443													6	44					0	0	0.248553	0	0
APLP1	333	broad.mit.edu	37	19	36364607	36364607	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:36364607C>T	uc002oce.2	+	8	1186	c.1048C>T	c.(1048-1050)CTG>TTG	p.L350L	APLP1_uc010xsz.1_Silent_p.L311L|APLP1_uc002ocf.2_Silent_p.L350L|APLP1_uc002ocg.2_Silent_p.L253L|APLP1_uc010xta.1_Silent_p.L344L	NM_005166	NP_005157	P51693	APLP1_HUMAN	amyloid precursor-like protein 1 isoform 2	350	Extracellular (Potential).				apoptosis|cell adhesion|cellular response to norepinephrine stimulus|endocytosis|negative regulation of cAMP biosynthetic process|nervous system development|organ morphogenesis	basement membrane|integral to membrane|perinuclear region of cytoplasm|plasma membrane	alpha-2A adrenergic receptor binding|alpha-2B adrenergic receptor binding|alpha-2C adrenergic receptor binding|heparin binding|identical protein binding|metal ion binding			ovary(2)	2	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CAGACAGGCCCTGAATGAGGT	0.587													15	17					0	0	0.500413	0	0
ZNF829	374899	broad.mit.edu	37	19	37399336	37399336	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:37399336G>A	uc002ofa.1	-	4	484	c.122C>T	c.(121-123)TCC>TTC	p.S41F	ZNF345_uc002oez.2_Intron|ZNF829_uc002ofb.2_Missense_Mutation_p.S41F	NM_001037232	NP_001032309	Q3KNS6	ZN829_HUMAN	zinc finger protein 829	41	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GAAGTCTATGGAAACATCCCT	0.438													31	22					0	0	0.804634	0	0
YIF1B	90522	broad.mit.edu	37	19	38798128	38798128	+	Silent	SNP	G	A	A	rs146100643	byFrequency	TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:38798128G>A	uc002ohz.2	-	7	778	c.729C>T	c.(727-729)TTC>TTT	p.F243F	YIF1B_uc002ohw.2_Silent_p.F212F|YIF1B_uc002ohx.2_Silent_p.F228F|YIF1B_uc010xtx.1_Silent_p.F226F|YIF1B_uc010xty.1_Silent_p.F212F|YIF1B_uc002oia.2_Silent_p.F240F|YIF1B_uc002ohy.2_Silent_p.F240F|YIF1B_uc002oib.2_Silent_p.F240F	NM_001039672	NP_001034761	Q5BJH7	YIF1B_HUMAN	Yip1 interacting factor homolog B isoform 5	243	Helical; (Potential).					integral to membrane					0	all_cancers(60;1.07e-06)		Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			CAATCTTCCCGAAGAGCAGGC	0.647													3	33					0	0	0.150653	0	0
ACTN4	81	broad.mit.edu	37	19	39207754	39207754	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:39207754C>T	uc002oja.1	+	10	1000	c.941C>T	c.(940-942)CCC>CTC	p.P314L	ACTN4_uc010egc.1_Missense_Mutation_p.P314L	NM_004924	NP_004915	O43707	ACTN4_HUMAN	actinin, alpha 4	314	Spectrin 1.				platelet activation|platelet degranulation|positive regulation of cellular component movement|positive regulation of sodium:hydrogen antiporter activity|protein transport|regulation of apoptosis	extracellular region|nucleolus|perinuclear region of cytoplasm|platelet alpha granule lumen|protein complex|pseudopodium|ribonucleoprotein complex	actin filament binding|calcium ion binding|integrin binding|nucleoside binding|protein homodimerization activity				0	all_cancers(60;1.57e-05)|Ovarian(47;0.103)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			CGCACCATCCCCTGGCTGGAG	0.647													6	6					0	0	0.278610	0	0
PLEKHG2	64857	broad.mit.edu	37	19	39914450	39914450	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:39914450C>T	uc010xuz.1	+	19	3002	c.2677C>T	c.(2677-2679)CTG>TTG	p.L893L	PLEKHG2_uc010xuy.1_Silent_p.L834L|PLEKHG2_uc002olj.2_Intron|PLEKHG2_uc010xva.1_Silent_p.L671L	NM_022835	NP_073746	Q9H7P9	PKHG2_HUMAN	common-site lymphoma/leukemia guanine nucleotide	893					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			skin(2)|pancreas(1)|breast(1)	4	all_cancers(60;3.08e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;6.57e-07)|Ovarian(47;0.0569)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			GTCTGTCCCCCTGGGTCCTGC	0.567													32	18					0	0	0.769981	0	0
SPTBN4	57731	broad.mit.edu	37	19	41007858	41007858	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:41007858C>T	uc002ony.2	+	8	901	c.815C>T	c.(814-816)TCC>TTC	p.S272F	SPTBN4_uc002onx.2_Missense_Mutation_p.S272F|SPTBN4_uc002onz.2_Missense_Mutation_p.S272F	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	272	Actin-binding.|CH 2.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GATGAGAAGTCCATCATCACC	0.507													20	116					0	0	0.693898	0	0
LTBP4	8425	broad.mit.edu	37	19	41113412	41113412	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:41113412A>T	uc002ooh.1	+	10	1334	c.1334A>T	c.(1333-1335)CAG>CTG	p.Q445L	LTBP4_uc002oog.1_Missense_Mutation_p.Q408L|LTBP4_uc002ooi.1_Missense_Mutation_p.Q378L|LTBP4_uc002ooj.1_5'Flank|LTBP4_uc010xvo.1_5'Flank	NM_001042544	NP_001036009	Q8N2S1	LTBP4_HUMAN	latent transforming growth factor beta binding	445	TB 2.				growth hormone secretion|multicellular organismal development|protein folding|regulation of cell differentiation|regulation of cell growth|regulation of proteolysis|regulation of transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|glycosaminoglycan binding|integrin binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			central_nervous_system(1)	1			Lung(22;0.000158)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CGGGGCTGCCAGCTCTGCCCA	0.662													12	4					0	0	0.500413	0	0
GRIK5	2901	broad.mit.edu	37	19	42507571	42507571	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:42507571G>A	uc002osj.1	-	18	2462	c.2427C>T	c.(2425-2427)ATC>ATT	p.I809I	GRIK5_uc002osi.1_Silent_p.I381I	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor	809	Helical; (Potential).					cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	AGATGAGCACGATAAAAATGC	0.587													9	52					0	0	0.307466	0	0
POU2F2	5452	broad.mit.edu	37	19	42626663	42626663	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:42626663C>T	uc002osp.2	-	2	161	c.94G>A	c.(94-96)GAC>AAC	p.D32N	POU2F2_uc002osn.2_Missense_Mutation_p.D32N|POU2F2_uc002oso.2_5'UTR|POU2F2_uc002osq.2_Missense_Mutation_p.D32N|POU2F2_uc002osr.1_Missense_Mutation_p.D32N	NM_002698	NP_002689	P09086	PO2F2_HUMAN	POU domain, class 2, transcription factor 2	32					humoral immune response|transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2		Prostate(69;0.059)				GCCCACCCACCTGTGTGCTCT	0.627													19	16					0	0	0.592651	0	0
PSG3	5671	broad.mit.edu	37	19	43242944	43242944	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:43242944G>A	uc002oue.2	-	2	494	c.362C>T	c.(361-363)ACC>ATC	p.T121I	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Missense_Mutation_p.T143I	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	121	Ig-like V-type.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				GATGTGTAAGGTGTAGGATCC	0.483													162	116					0	0	0.870114	0	0
CD177	57126	broad.mit.edu	37	19	43859894	43859894	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:43859894G>A	uc002owi.2	+	4	503	c.461G>A	c.(460-462)GGG>GAG	p.G154E	CD177_uc010eis.2_RNA|CD177_uc002owj.2_RNA	NM_020406	NP_065139	Q8N6Q3	CD177_HUMAN	CD177 molecule precursor	154	UPAR/Ly6 1.				blood coagulation|leukocyte migration	anchored to membrane|plasma membrane				central_nervous_system(1)	1		Prostate(69;0.00682)				TGCCCCAAGGGGACCACACAC	0.577													17	17					0	0	0.575678	0	0
CD177	57126	broad.mit.edu	37	19	43866411	43866411	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:43866411G>A	uc002owi.2	+	10	1295	c.1253G>A	c.(1252-1254)TGG>TAG	p.W418*	CD177_uc010eis.2_RNA|CD177_uc002owj.2_RNA	NM_020406	NP_065139	Q8N6Q3	CD177_HUMAN	CD177 molecule precursor	418					blood coagulation|leukocyte migration	anchored to membrane|plasma membrane				central_nervous_system(1)	1		Prostate(69;0.00682)				TCTCTCACTTGGGGGGTGGGG	0.617													8	5					0	0	0.335167	0	0
SULT2B1	6820	broad.mit.edu	37	19	49102445	49102445	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:49102445G>A	uc002pjl.2	+	7	961	c.880G>A	c.(880-882)GAT>AAT	p.D294N	SULT2B1_uc002pjm.2_Missense_Mutation_p.D279N	NM_177973	NP_814444	O00204	ST2B1_HUMAN	sulfotransferase family, cytosolic, 2B, member 1	294					3'-phosphoadenosine 5'-phosphosulfate metabolic process|steroid metabolic process|xenobiotic metabolic process	cytosol	alcohol sulfotransferase activity|protein binding|steroid sulfotransferase activity			skin(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000115)|all cancers(93;0.000147)|GBM - Glioblastoma multiforme(486;0.00707)|Epithelial(262;0.0178)		CGAAGCCTTCGATCGTGCCTA	0.667													8	3					0	0	0.335167	0	0
FUT2	2524	broad.mit.edu	37	19	49206638	49206638	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:49206638G>A	uc002pke.3	+	2	536	c.425G>A	c.(424-426)GGG>GAG	p.G142E	FUT2_uc010emc.2_Missense_Mutation_p.G142E	NM_001097638	NP_001091107	Q10981	FUT2_HUMAN	fucosyltransferase 2	142	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	galactoside 2-alpha-L-fucosyltransferase activity			central_nervous_system(1)	1		all_lung(116;4.89e-06)|all_epithelial(76;7.04e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.00011)|all cancers(93;0.000238)|GBM - Glioblastoma multiforme(486;0.0164)|Epithelial(262;0.017)		CACATCCCGGGGGAGTACGTC	0.647													12	65					0	0	0.387290	0	0
PRR12	57479	broad.mit.edu	37	19	50118189	50118189	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:50118189C>T	uc002poo.3	+	8	4947	c.4947C>T	c.(4945-4947)TTC>TTT	p.F1649F		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	828							DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		ATGTAAAGTTCCTGGAAAATG	0.512													18	14					0	0	0.575678	0	0
BCL2L12	83596	broad.mit.edu	37	19	50169132	50169132	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:50169132C>T	uc002ppa.2	+	1	734	c.52C>T	c.(52-54)CGG>TGG	p.R18W	IRF3_uc002pot.1_5'Flank|IRF3_uc010end.1_5'Flank|IRF3_uc002pox.1_5'Flank|IRF3_uc002poy.1_5'Flank|IRF3_uc002pou.2_5'UTR|IRF3_uc002pov.2_5'UTR|IRF3_uc002pow.2_5'UTR|IRF3_uc002poz.1_5'Flank|IRF3_uc010ene.1_5'Flank|BCL2L12_uc002ppb.2_Missense_Mutation_p.R18W	NM_138639	NP_619580	Q9HB09	B2L12_HUMAN	BCL2-like 12 isoform 1	18					apoptosis					central_nervous_system(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.000681)|GBM - Glioblastoma multiforme(134;0.0214)		TTTGGGTTTCCGGCCAGAGGC	0.577													6	34					0	0	0.248553	0	0
KCNC3	3748	broad.mit.edu	37	19	50823849	50823849	+	Splice_Site	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:50823849C>T	uc002pru.1	-	3	2465	c.2170_splice	c.e3+1	p.A724_splice	KCNC3_uc002prt.1_Splice_Site_p.A360_splice	NM_004977	NP_004968	Q14003	KCNC3_HUMAN	Shaw-related voltage-gated potassium channel						cell death	voltage-gated potassium channel complex	voltage-gated potassium channel activity			pancreas(1)	1		all_neural(266;0.057)|Ovarian(192;0.208)		OV - Ovarian serous cystadenocarcinoma(262;0.00283)|GBM - Glioblastoma multiforme(134;0.0181)		GGGCACCTCACCTTTTCGGAT	0.672													9	6					0	0	0.361761	0	0
ZNF320	162967	broad.mit.edu	37	19	53384634	53384634	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:53384634C>G	uc002qag.2	-	4	936	c.745G>C	c.(745-747)GAG>CAG	p.E249Q	ZNF320_uc010eqh.1_5'Flank|ZNF320_uc010eqi.1_Intron|ZNF320_uc002qah.2_Missense_Mutation_p.E195Q|ZNF320_uc002qai.2_Missense_Mutation_p.E249Q	NM_207333	NP_997216	A2RRD8	ZN320_HUMAN	zinc finger protein 320	249	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0534)		TTGCCACACTCATTACACTTA	0.393													42	48					0	0	0.870114	0	0
KIR2DL4	3805	broad.mit.edu	37	19	55316267	55316267	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:55316267C>T	uc010yfm.1	+	3	136	c.96C>T	c.(94-96)TTC>TTT	p.F32F	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL4_uc010yfl.1_Silent_p.F27F|KIR2DL4_uc002qhg.2_Silent_p.F32F|KIR2DL4_uc002qhi.2_Silent_p.F32F|KIR2DL4_uc002qhh.2_Intron|KIR2DL4_uc002qhj.2_Silent_p.F32F|KIR2DL4_uc002qhf.2_Intron|KIR2DL4_uc010esd.2_Silent_p.F32F|KIR2DL4_uc010ese.2_5'Flank	NM_002255	NP_002246	Q99706	KI2L4_HUMAN	killer cell immunoglobulin-like receptor, two	32	Extracellular (Potential).				cellular defense response|regulation of immune response	integral to plasma membrane	protein binding|transmembrane receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0192)		ACAAGCCCTTCTGCTCTGCCT	0.567													5	6					0	0	0.335167	0	0
NLRP7	199713	broad.mit.edu	37	19	55451490	55451490	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:55451490C>T	uc002qih.3	-	4	773	c.697G>A	c.(697-699)GAA>AAA	p.E233K	NLRP7_uc002qig.3_Missense_Mutation_p.E233K|NLRP7_uc002qii.3_Missense_Mutation_p.E233K|NLRP7_uc010esk.2_Missense_Mutation_p.E233K|NLRP7_uc010esl.2_Missense_Mutation_p.E261K	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	233	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		TCCTGCAATTCAGGCCAGTCT	0.567													57	41					0	0	0.870114	0	0
NLRP4	147945	broad.mit.edu	37	19	56373457	56373457	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:56373457C>T	uc002qmd.3	+	5	2540	c.2118C>T	c.(2116-2118)CTC>CTT	p.L706L	NLRP4_uc002qmf.2_Silent_p.L631L|NLRP4_uc010etf.2_Silent_p.L537L	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	706	LRR 2.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		TCACGAAACTCTCTCGTGATG	0.468													30	18					0	0	0.769981	0	0
NLRP5	126206	broad.mit.edu	37	19	56515139	56515139	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr19:56515139C>T	uc002qmj.2	+	2	120	c.120C>T	c.(118-120)TTC>TTT	p.F40F	NLRP5_uc002qmi.2_Silent_p.F40F	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	40						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		ATCCACTTTTCCCCCAAAACC	0.438													7	40					0	0	0.335167	0	0
KCNF1	3754	broad.mit.edu	37	2	11052970	11052970	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:11052970G>A	uc002rax.2	+	1	908	c.418G>A	c.(418-420)GAG>AAG	p.E140K		NM_002236	NP_002227	Q9H3M0	KCNF1_HUMAN	potassium voltage-gated channel, subfamily F,	140	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.128)		GGAGCTGGAGGAGATCGCGCG	0.632													19	27					0	0	0.654019	0	0
SNX17	9784	broad.mit.edu	37	2	27596815	27596815	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:27596815G>A	uc002rkg.1	+	5	631	c.409G>A	c.(409-411)GAT>AAT	p.D137N	SNX17_uc010ylj.1_Missense_Mutation_p.D117N|SNX17_uc010ylk.1_5'UTR|SNX17_uc010eza.1_5'UTR|SNX17_uc002rki.1_RNA|SNX17_uc002rkh.1_5'UTR|SNX17_uc010yll.1_5'UTR|SNX17_uc010ylm.1_5'UTR|SNX17_uc010yln.1_Missense_Mutation_p.D125N|SNX17_uc010ylo.1_Missense_Mutation_p.D55N|SNX17_uc010ylp.1_Missense_Mutation_p.D112N|SNX17_uc010ylq.1_5'UTR	NM_014748	NP_055563	Q15036	SNX17_HUMAN	sorting nexin 17	137	Ras-associating.				cell communication|endosome transport|intracellular protein transport|regulation of endocytosis|signal transduction	cytoplasmic vesicle membrane|cytosol|early endosome|Golgi apparatus	low-density lipoprotein particle receptor binding|phosphatidylinositol binding|protein C-terminus binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCTAACTTCAGATCAGACTGA	0.557													34	22					0	0	0.812448	0	0
C2orf71	388939	broad.mit.edu	37	2	29294105	29294105	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:29294105C>T	uc002rmt.1	-	1	3023	c.3023G>A	c.(3022-3024)AGG>AAG	p.R1008K		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	1008					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						GCTCCGGCGCCTCTTGTCTGC	0.662													11	25					0	0	0.411799	0	0
XDH	7498	broad.mit.edu	37	2	31562483	31562483	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:31562483G>A	uc002rnv.1	-	34	3725	c.3646C>T	c.(3646-3648)CCC>TCC	p.P1216S		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	1216					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	CTCCCCTCGGGGGAATAGTGT	0.612													29	23					0	0	0.740014	0	0
BIRC6	57448	broad.mit.edu	37	2	32640294	32640294	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:32640294C>T	uc010ezu.2	+	10	2069	c.1935C>T	c.(1933-1935)ATC>ATT	p.I645I		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	645					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					CAGGAAAGATCTTTTCACAGA	0.378													11	18					0	0	0.457914	0	0
CD207	50489	broad.mit.edu	37	2	71060133	71060134	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:71060133_71060134GT>AA	uc002shg.2	-	4	661_662	c.614_615AC>TT	c.(613-615)AAC>ATT	p.N205I		NM_015717	NP_056532	Q9UJ71	CLC4K_HUMAN	CD207 antigen, langerin	205	C-type lectin.|Extracellular (Potential).				defense response to virus	endocytic vesicle|integral to membrane	mannose binding			ovary(1)|lung(1)	2						AGTAATAGAAGTTCCCCTTGAA	0.45													24	16					0	0	0.115264	0	0
EGR4	1961	broad.mit.edu	37	2	73518772	73518772	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:73518772A>G	uc010yrj.1	-	2	1658	c.1583T>C	c.(1582-1584)CTC>CCC	p.L528P	EGR4_uc010yrk.1_Missense_Mutation_p.L527P	NM_001965	NP_001956	Q05215	EGR4_HUMAN	early growth response 4	424						intracellular	nucleic acid binding|zinc ion binding				0						GTGCGTGGTGAGGTGGTCGCT	0.662													21	35					0	0	0.706142	0	0
LRRTM4	80059	broad.mit.edu	37	2	77746532	77746532	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:77746532C>T	uc002snr.2	-	3	878	c.463G>A	c.(463-465)GGC>AGC	p.G155S	LRRTM4_uc002snq.2_Missense_Mutation_p.G155S|LRRTM4_uc002sns.2_Missense_Mutation_p.G155S|LRRTM4_uc002snt.2_Missense_Mutation_p.G156S	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	155	LRR 4.|Extracellular (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		TTCCGAAGGCCTTTAAATTGT	0.383													30	18					0	0	0.717897	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95481655	95481655	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:95481655C>T	uc010fhq.1	-	2	725	c.333G>A	c.(331-333)ATG>ATA	p.M111I	ANKRD20B_uc010fhp.2_RNA	NM_001012421	NP_001012421			ankyrin repeat domain 20 family, member A2												0						TGTCATTTTTCATTGTACATA	0.299													29	43					0	0	0.740014	0	0
C2orf55	343990	broad.mit.edu	37	2	99448879	99448879	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:99448879C>T	uc002szf.1	-	5	766	c.472G>A	c.(472-474)GAC>AAC	p.D158N		NM_207362	NP_997245	Q6NV74	CB055_HUMAN	hypothetical protein LOC343990	158											0						GGCAGCCCGTCGTCCTCAGAG	0.587													17	37					0	0	0.608945	0	0
PLGLA	285189	broad.mit.edu	37	2	107002800	107002800	+	RNA	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:107002800G>A	uc002tdp.2	+	1		c.32G>A				NR_003506				Homo sapiens plasminogen-like A (PLGLA), non-coding RNA.												0						GTGTCACTAAGAAGCAGCTGG	0.498													41	128					0	0	0.859065	0	0
BCL2L11	10018	broad.mit.edu	37	2	111907670	111907670	+	Silent	SNP	C	T	T	rs143377281	by1000genomes	TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:111907670C>T	uc002tgv.1	+	3	732	c.444C>T	c.(442-444)ATC>ATT	p.I148I	BCL2L11_uc002tgu.1_Silent_p.I88I|BCL2L11_uc002tgw.1_RNA|BCL2L11_uc002tgx.1_RNA|BCL2L11_uc010fkd.1_RNA|BCL2L11_uc002tgy.1_Intron|BCL2L11_uc002tgz.1_Silent_p.I58I|BCL2L11_uc010fke.1_Intron|BCL2L11_uc002tha.1_Intron|BCL2L11_uc002thb.1_RNA|BCL2L11_uc002thc.1_RNA|BCL2L11_uc002thd.1_Intron	NM_138621	NP_619527	O43521	B2L11_HUMAN	BCL2-like 11 isoform 1	148	BH3.				activation of pro-apoptotic gene products|induction of apoptosis by extracellular signals|induction of apoptosis by intracellular signals|nerve growth factor receptor signaling pathway|positive regulation of protein homooligomerization|positive regulation of release of cytochrome c from mitochondria	cytosol|endomembrane system|mitochondrial outer membrane|plasma membrane	protein binding|protein binding				0						AGATATGGATCGCCCAAGAGT	0.473													27	20					0	0	0.769981	0	0
IL1A	3552	broad.mit.edu	37	2	113541312	113541312	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:113541312C>T	uc002tig.2	-	2	996	c.36G>A	c.(34-36)AAG>AAA	p.K12K		NM_000575	NP_000566	P01583	IL1A_HUMAN	interleukin 1, alpha proprotein	12					anti-apoptosis|apoptosis|cell proliferation|cellular response to heat|cytokine-mediated signaling pathway|fever generation|immune response|negative regulation of cell proliferation|positive regulation of angiogenesis|positive regulation of cell division|positive regulation of cytokine secretion|positive regulation of interleukin-2 biosynthetic process|positive regulation of mitosis|positive regulation vascular endothelial growth factor production|response to copper ion	cytosol|extracellular space	copper ion binding|cytokine activity|interleukin-1 receptor binding			lung(1)	1						TGTAACAGTTCTTCAGGTCTT	0.463													15	70					0	0	0.557998	0	0
IL1RN	3557	broad.mit.edu	37	2	113887221	113887221	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:113887221G>A	uc002tjb.2	+	2	249	c.185G>A	c.(184-186)GGA>GAA	p.G62E	IL1RN_uc002tix.1_RNA|IL1RN_uc002tiy.2_Missense_Mutation_p.G28E|IL1RN_uc002tiz.2_Missense_Mutation_p.G65E|IL1RN_uc002tja.2_Missense_Mutation_p.G44E	NM_173842	NP_776214	P18510	IL1RA_HUMAN	interleukin 1 receptor antagonist isoform 1	62					immune response|inflammatory response|response to glucocorticoid stimulus	centrosome|extracellular space|nucleus|plasma membrane	cytokine activity|interleukin-1 receptor antagonist activity			skin(2)	2					Anakinra(DB00026)	TACTTGCAAGGACCAAATGTC	0.483									Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of				15	64					0	0	0.575678	0	0
POTEF	728378	broad.mit.edu	37	2	130877893	130877893	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:130877893G>A	uc010fmh.2	-	3	596	c.196C>T	c.(196-198)CGC>TGC	p.R66C		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	66						cell cortex	ATP binding			skin(3)|ovary(2)	5						AAGCAGTGGCGGCACCACTTG	0.602													7	200					0	0	0.278610	0	0
POTEE	445582	broad.mit.edu	37	2	132021858	132021858	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:132021858G>A	uc002tsn.2	+	15	2882	c.2830G>A	c.(2830-2832)GAT>AAT	p.D944N	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Missense_Mutation_p.D544N|POTEE_uc002tsl.2_Missense_Mutation_p.D526N|POTEE_uc010fmy.1_Missense_Mutation_p.D408N	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	944	Actin-like.						ATP binding				0						CGAGCTGCCCGATGGCCAGGT	0.602													10	118					0	0	0.435327	0	0
LOC401010	401010	broad.mit.edu	37	2	132201927	132201927	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:132201927G>A	uc002tst.2	-	1	541	c.75C>T	c.(73-75)TTC>TTT	p.F25F		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						CAGCTGCTCCGAATGCCTGTA	0.537													6	20					0	0	0.217242	0	0
THSD7B	80731	broad.mit.edu	37	2	138425365	138425365	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:138425365T>C	uc002tva.1	+	26	4586	c.4586T>C	c.(4585-4587)GTT>GCT	p.V1529A		NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AAAATTTGGGTTTATGGCGTT	0.358													6	1					0	0	0.278610	0	0
LRP1B	53353	broad.mit.edu	37	2	140995831	140995831	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:140995831C>T	uc002tvj.1	-	89	14422	c.13450G>A	c.(13450-13452)GGA>AGA	p.G4484R		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4484	Cytoplasmic (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTTATTCCTCCATTGATAATA	0.303										TSP Lung(27;0.18)			6	18					0	0	0.217242	0	0
LRP1B	53353	broad.mit.edu	37	2	141072531	141072531	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:141072531C>T	uc002tvj.1	-	83	13750	c.12778G>A	c.(12778-12780)GGA>AGA	p.G4260R		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4260	Extracellular (Potential).|EGF-like 11.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CAAGTTCCTCCATTCTGGCAG	0.363										TSP Lung(27;0.18)			14	53					0	0	0.539581	0	0
LRP1B	53353	broad.mit.edu	37	2	141625352	141625352	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:141625352G>A	uc002tvj.1	-	27	5358	c.4386C>T	c.(4384-4386)ATC>ATT	p.I1462I	LRP1B_uc010fnl.1_Silent_p.I644I	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1462	Extracellular (Potential).|LDL-receptor class B 12.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GACCTCGGATGATTTCTATCA	0.408										TSP Lung(27;0.18)			37	32					0	0	0.853193	0	0
FMNL2	114793	broad.mit.edu	37	2	153435417	153435417	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:153435417G>A	uc002tye.2	+	8	1088	c.721G>A	c.(721-723)GTC>ATC	p.V241I		NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	241	GBD/FH3.				actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						TTTCAACATGGTCATGTCTCA	0.368													11	13					0	0	0.435327	0	0
FMNL2	114793	broad.mit.edu	37	2	153475450	153475450	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:153475450G>A	uc002tye.2	+	14	1772	c.1405G>A	c.(1405-1407)GAA>AAA	p.E469K	FMNL2_uc010fob.2_5'Flank|FMNL2_uc002tyf.2_5'Flank	NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	469	GBD/FH3.				actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						GTCTACCCTGGAAAAAAAGAT	0.378													23	25					0	0	0.639603	0	0
GALNT13	114805	broad.mit.edu	37	2	155099270	155099270	+	Missense_Mutation	SNP	A	T	T	rs149581963	byFrequency	TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:155099270A>T	uc002tyr.3	+	6	1105	c.538A>T	c.(538-540)ATT>TTT	p.I180F	GALNT13_uc002tyt.3_Missense_Mutation_p.I180F|GALNT13_uc010foc.1_5'UTR	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	180	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						AGTAAAAATTATTAGGATGGA	0.358													17	12					0	0	0.608945	0	0
GALNT13	114805	broad.mit.edu	37	2	155099272	155099272	+	Silent	SNP	T	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:155099272T>A	uc002tyr.3	+	6	1107	c.540T>A	c.(538-540)ATT>ATA	p.I180I	GALNT13_uc002tyt.3_Silent_p.I180I|GALNT13_uc010foc.1_5'UTR	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	180	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						TAAAAATTATTAGGATGGAAG	0.358													17	13					0	0	0.608945	0	0
CYTIP	9595	broad.mit.edu	37	2	158272620	158272620	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:158272620C>T	uc002tzj.1	-	8	721	c.649G>A	c.(649-651)GAC>AAC	p.D217N	CYTIP_uc010zcl.1_Missense_Mutation_p.D111N	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	217					regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						TCATCCAAGTCCATGTTTTCC	0.473													19	16					0	0	0.639603	0	0
CCDC148	130940	broad.mit.edu	37	2	159166097	159166097	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:159166097T>C	uc002tzq.2	-	9	1221	c.958A>G	c.(958-960)ATC>GTC	p.I320V	CCDC148_uc002tzr.2_Missense_Mutation_p.I168V|CCDC148_uc010foh.2_Missense_Mutation_p.I33V|CCDC148_uc010foi.1_Missense_Mutation_p.I267V|CCDC148_uc010foj.1_Missense_Mutation_p.I168V|CCDC148_uc010fok.1_Missense_Mutation_p.I234V	NM_138803	NP_620158	Q8NFR7	CC148_HUMAN	coiled-coil domain containing 148	320										ovary(2)	2						GATATCAGGATATTTTGCTGC	0.363													13	24					0	0	0.479597	0	0
MARCH7	64844	broad.mit.edu	37	2	160605239	160605239	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:160605239C>T	uc002uax.2	+	5	1560	c.1438C>T	c.(1438-1440)CCT>TCT	p.P480S	MARCH7_uc010foq.2_Missense_Mutation_p.P480S|MARCH7_uc010zcn.1_Missense_Mutation_p.P424S|MARCH7_uc010for.2_Missense_Mutation_p.P442S|MARCH7_uc002uay.2_RNA	NM_022826	NP_073737	Q9H992	MARH7_HUMAN	axotrophin	480							ligase activity|zinc ion binding				0						AGGGATTCTTCCTGGTTCCTT	0.463													80	244					0	0	0.870114	0	0
GCA	25801	broad.mit.edu	37	2	163204218	163204218	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:163204218C>T	uc002ucg.2	+	2	334	c.158C>T	c.(157-159)TCC>TTC	p.S53F	GCA_uc010zcu.1_Missense_Mutation_p.S34F	NM_012198	NP_036330	P28676	GRAN_HUMAN	grancalcin, EF-hand calcium binding protein	53	EF-hand 1.				cellular membrane fusion	cytoplasm|plasma membrane	calcium ion binding|protein homodimerization activity				0						GCTGGTGACTCCGTGTATACT	0.423													24	37					0	0	0.717897	0	0
SCN3A	6328	broad.mit.edu	37	2	165984456	165984456	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:165984456G>A	uc002ucx.2	-	18	3570	c.3078C>T	c.(3076-3078)TTC>TTT	p.F1026F	SCN3A_uc002ucy.2_Silent_p.F977F|SCN3A_uc002ucz.2_Silent_p.F977F|SCN3A_uc002uda.1_Silent_p.F846F|SCN3A_uc002udb.1_Silent_p.F846F	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1026						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	AGGCTTTTTGGAAACACTCCC	0.348													24	25					0	0	0.693898	0	0
SCN7A	6332	broad.mit.edu	37	2	167298251	167298251	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:167298251G>A	uc002udu.1	-	14	1939	c.1812C>T	c.(1810-1812)TTC>TTT	p.F604F	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	604	Helical; Voltage-sensor; Name=S4 of repeat II; (By similarity).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						TTCCCAACTTGAAAATTCTTA	0.353													20	16					0	0	0.624587	0	0
XIRP2	129446	broad.mit.edu	37	2	167992518	167992518	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:167992518G>A	uc002udx.2	+	2	526	c.508G>A	c.(508-510)GAA>AAA	p.E170K	XIRP2_uc010fpn.2_Missense_Mutation_p.E170K|XIRP2_uc010fpo.2_Missense_Mutation_p.E170K|XIRP2_uc010fpp.2_Missense_Mutation_p.E170K|XIRP2_uc002udy.2_5'UTR	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	Error:Variant_position_missing_in_A4UGR9_after_alignment					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GAAAGGCAAGGAAACATCTTT	0.438													21	56					0	0	0.639603	0	0
ITGA6	3655	broad.mit.edu	37	2	173349578	173349578	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:173349578C>T	uc002uhp.1	+	12	1821	c.1618C>T	c.(1618-1620)CGA>TGA	p.R540*	ITGA6_uc010zdy.1_Nonsense_Mutation_p.R421*|ITGA6_uc002uho.1_Nonsense_Mutation_p.R540*|ITGA6_uc010fqm.1_Nonsense_Mutation_p.R186*	NM_001079818	NP_001073286	P23229	ITA6_HUMAN	integrin alpha chain, alpha 6 isoform a	579	Extracellular (Potential).				blood coagulation|cell adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|positive regulation of apoptosis|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter	integrin complex	protein binding|receptor activity			ovary(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0979)			AGTTCAGTTTCGAAACCAAGG	0.408													13	63					0	0	0.457914	0	0
TTN	7273	broad.mit.edu	37	2	179441491	179441491	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:179441491C>T	uc010zfg.1	-	274	62000	c.61776G>A	c.(61774-61776)TGG>TGA	p.W20592*	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Nonsense_Mutation_p.W14287*|TTN_uc010zfi.1_Nonsense_Mutation_p.W14220*|TTN_uc010zfj.1_Nonsense_Mutation_p.W14095*|uc002umv.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21519							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGGCCTTTTCCAGCTGACAG	0.448													9	41					0	0	0.335167	0	0
TTN	7273	broad.mit.edu	37	2	179457996	179457996	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:179457996C>T	uc010zfg.1	-	248	51459	c.51235G>A	c.(51235-51237)GGA>AGA	p.G17079R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G10774R|TTN_uc010zfi.1_Missense_Mutation_p.G10707R|TTN_uc010zfj.1_Missense_Mutation_p.G10582R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18006							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TACTGACATCCTTCTAGAAGA	0.398													28	41					0	0	0.717897	0	0
TTN	7273	broad.mit.edu	37	2	179467100	179467100	+	Silent	SNP	C	T	T	rs62178963	by1000genomes	TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:179467100C>T	uc010zfg.1	-	232	47549	c.47325G>A	c.(47323-47325)AGG>AGA	p.R15775R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.R9470R|TTN_uc010zfi.1_Silent_p.R9403R|TTN_uc010zfj.1_Silent_p.R9278R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16702							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCTGTACTTCCTGAGCTCTT	0.413													12	47					0	0	0.457914	0	0
TTN	7273	broad.mit.edu	37	2	179547505	179547505	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:179547505G>A	uc010zfg.1	-	132	29505	c.29281C>T	c.(29281-29283)CCA>TCA	p.P9761S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P6422S|TTN_uc010fre.1_Missense_Mutation_p.P608S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10688							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTCTGTTGGTTCATACTCC	0.368													72	69					0	0	0.870114	0	0
TTN	7273	broad.mit.edu	37	2	179640313	179640313	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:179640313G>A	uc010zfg.1	-	28	6502	c.6278C>T	c.(6277-6279)TCT>TTT	p.S2093F	TTN_uc010zfh.1_Missense_Mutation_p.S2047F|TTN_uc010zfi.1_Missense_Mutation_p.S2047F|TTN_uc010zfj.1_Missense_Mutation_p.S2047F|TTN_uc002unb.2_Missense_Mutation_p.S2093F|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2093							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGTGCATCAGATCCTTGGCC	0.463													17	25					0	0	0.608945	0	0
COL3A1	1281	broad.mit.edu	37	2	189875409	189875410	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:189875409_189875410CC>TT	uc002uqj.1	+	50	4164_4165	c.4047_4048CC>TT	c.(4045-4050)GTCCTT>GTTTTT	p.L1350F		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	1350	Fibrillar collagen NC1.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	CTGAAGATGTCCTTGATGTGCA	0.441													7	109					0	0	0.115264	0	0
WDR75	84128	broad.mit.edu	37	2	190334870	190334870	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:190334870C>T	uc002uql.1	+	17	1948	c.1888C>T	c.(1888-1890)CAG>TAG	p.Q630*	WDR75_uc002uqm.1_Nonsense_Mutation_p.Q566*|WDR75_uc002uqn.1_Nonsense_Mutation_p.Q408*|WDR75_uc002uqo.1_Nonsense_Mutation_p.Q408*	NM_032168	NP_115544	Q8IWA0	WDR75_HUMAN	WD repeat domain 75	630						nucleolus				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00105)|Epithelial(96;0.0129)|all cancers(119;0.0456)			AGAGAAAGTCCAGTGGGGAGT	0.398													47	105					0	0	0.870114	0	0
SDPR	8436	broad.mit.edu	37	2	192711433	192711433	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:192711433C>T	uc002utb.2	-	1	549	c.219G>A	c.(217-219)CAG>CAA	p.Q73Q		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	73	Potential.					caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	GCTGGTTCTCCTGCACAGCGT	0.572													16	39					0	0	0.575678	0	0
DNAH7	56171	broad.mit.edu	37	2	196753694	196753694	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:196753694C>T	uc002utj.3	-	32	5159	c.5058G>A	c.(5056-5058)AGG>AGA	p.R1686R		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1686	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTAACCATTTCCTATCTGGAG	0.343													25	92					0	0	0.796494	0	0
HECW2	57520	broad.mit.edu	37	2	197194325	197194325	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:197194325C>T	uc002utm.1	-	5	728	c.545G>A	c.(544-546)CGA>CAA	p.R182Q	HECW2_uc002utl.1_5'UTR	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	182	C2.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						AACAAGTTTTCGAGAATGCAG	0.408													41	61					0	0	0.870114	0	0
NOP58	51602	broad.mit.edu	37	2	203160481	203160481	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:203160481C>T	uc002uzb.2	+	10	1142	c.992C>T	c.(991-993)TCT>TTT	p.S331F		NM_015934	NP_057018	Q9Y2X3	NOP58_HUMAN	NOP58 ribonucleoprotein homolog	331	Nop.				cell growth|rRNA processing|snRNP protein import into nucleus	box C/D snoRNP complex|Cajal body|cytoplasm|pre-snoRNP complex	protein binding|snoRNA binding				0						GCCCTCAAATCTAGACGGGAT	0.428													36	30					0	0	0.812448	0	0
INO80D	54891	broad.mit.edu	37	2	206911278	206911278	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:206911278G>A	uc002vaz.3	-	5	1428	c.1023C>T	c.(1021-1023)CCC>CCT	p.P341P		NM_017759	NP_060229	Q53TQ3	IN80D_HUMAN	INO80 complex subunit D	341					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1						CAACCTGGTAGGGCGAGGCCT	0.408													36	35					0	0	0.870114	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:207025358A>G	uc002vbf.1	+	3	285	c.127A>G	c.(127-129)AGC>GGC	p.S43G	NDUFS1_uc010ziq.1_5'Flank|NDUFS1_uc002vbe.2_5'Flank|NDUFS1_uc010zir.1_5'Flank|NDUFS1_uc010zis.1_5'Flank|NDUFS1_uc010zit.1_5'Flank|NDUFS1_uc010ziu.1_5'Flank|EEF1B2_uc002vbg.1_Missense_Mutation_p.S43G|EEF1B2_uc002vbh.1_Missense_Mutation_p.S43G|SNORD51_uc002vbi.1_5'Flank|SNORA41_uc002vbj.2_5'Flank	NM_001037663	NP_001032752	P24534	EF1B_HUMAN	eukaryotic translation elongation factor 1 beta	43	GST C-terminal.					cytosol|eukaryotic translation elongation factor 1 complex	protein binding|translation elongation factor activity				0						AGCCGTGTCCAGCCCACCGCC	0.468													4	109					0	0	0.217242	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:207025366G>A	uc002vbf.1	+	3	293	c.135G>A	c.(133-135)CCG>CCA	p.P45P	NDUFS1_uc010ziq.1_5'Flank|NDUFS1_uc002vbe.2_5'Flank|NDUFS1_uc010zir.1_5'Flank|NDUFS1_uc010zis.1_5'Flank|NDUFS1_uc010zit.1_5'Flank|NDUFS1_uc010ziu.1_5'Flank|EEF1B2_uc002vbg.1_Silent_p.P45P|EEF1B2_uc002vbh.1_Silent_p.P45P|SNORD51_uc002vbi.1_5'Flank|SNORA41_uc002vbj.2_5'Flank	NM_001037663	NP_001032752	P24534	EF1B_HUMAN	eukaryotic translation elongation factor 1 beta	45	GST C-terminal.					cytosol|eukaryotic translation elongation factor 1 complex	protein binding|translation elongation factor activity				0						CCAGCCCACCGCCTGCCGACT	0.448													4	109					0	0	0.184627	0	0
ABCA12	26154	broad.mit.edu	37	2	215855672	215855672	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:215855672G>A	uc002vew.2	-	24	3598	c.3378C>T	c.(3376-3378)ATC>ATT	p.I1126I	ABCA12_uc002vev.2_Silent_p.I808I|ABCA12_uc010zjn.1_Silent_p.I53I	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1126	Helical; (Potential).				cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TGAGGATCACGATGGTAACCA	0.378													21	75					0	0	0.639603	0	0
PTPRN	5798	broad.mit.edu	37	2	220155547	220155547	+	Splice_Site	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:220155547C>T	uc002vkz.2	-	21	2883	c.2794_splice	c.e21+1	p.G932_splice	PTPRN_uc010zlc.1_Splice_Site_p.G842_splice|PTPRN_uc002vla.2_Splice_Site_p.G903_splice	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N						response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		AAGCTCCCTACCTTTTGCCAT	0.587													16	76					0	0	0.557998	0	0
FARSB	10056	broad.mit.edu	37	2	223507586	223507586	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:223507586G>A	uc002vne.1	-	3	288	c.253C>T	c.(253-255)CAG>TAG	p.Q85*	FARSB_uc010zlq.1_Nonsense_Mutation_p.Q105*|FARSB_uc002vnf.1_5'UTR	NM_005687	NP_005678	Q9NSD9	SYFB_HUMAN	phenylalanyl-tRNA synthetase, beta subunit	85					phenylalanyl-tRNA aminoacylation	cytosol|soluble fraction	ATP binding|magnesium ion binding|phenylalanine-tRNA ligase activity|RNA binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(121;3.47e-10)|all cancers(144;1.86e-07)|LUSC - Lung squamous cell carcinoma(224;0.00871)|Lung(261;0.011)	L-Phenylalanine(DB00120)	TTGAAGACCTGAAGTCCTCGA	0.393													11	36					0	0	0.479597	0	0
COL6A3	1293	broad.mit.edu	37	2	238271994	238271994	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:238271994C>T	uc002vwl.2	-	14	6250	c.5965G>A	c.(5965-5967)GAG>AAG	p.E1989K	COL6A3_uc002vwo.2_Missense_Mutation_p.E1783K|COL6A3_uc010znj.1_Missense_Mutation_p.E1382K	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1989	VWFA 10.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		ATTAGCCGCTCCAAGTTGACC	0.498													25	24					0	0	0.681144	0	0
C20orf96	140680	broad.mit.edu	37	20	259840	259840	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr20:259840G>A	uc002wde.1	-	5	577	c.438C>T	c.(436-438)GCC>GCT	p.A146A	C20orf96_uc002wdc.2_Silent_p.A93A|C20orf96_uc002wdd.2_Silent_p.A111A|C20orf96_uc010zpi.1_Silent_p.A93A|C20orf96_uc010zpj.1_Silent_p.A111A|C20orf96_uc010zpk.1_Silent_p.A84A	NM_153269	NP_695001	Q9NUD7	CT096_HUMAN	hypothetical protein LOC140680	146	Potential.										0		all_cancers(10;0.00959)|Lung NSC(37;0.227)	OV - Ovarian serous cystadenocarcinoma(29;0.149)			GCTGCAGCAGGGCCCGCACGT	0.493													7	37					0	0	0.361761	0	0
SIRPB1	10326	broad.mit.edu	37	20	1552409	1552409	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr20:1552409C>T	uc010gai.2	-	3	807	c.708G>A	c.(706-708)GGG>GGA	p.G236G	SIRPB1_uc002wfk.3_Intron	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	236	Ig-like C1-type 1.|Extracellular (Potential).				cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						GAAGAGGGTCCCCCTGCAAGG	0.612													22	88					0	0	0.667858	0	0
CDC25B	994	broad.mit.edu	37	20	3779059	3779059	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr20:3779059G>A	uc002wjn.2	+	3	1107	c.329G>A	c.(328-330)GGT>GAT	p.G110D	CDC25B_uc010zqk.1_Missense_Mutation_p.G46D|CDC25B_uc010zql.1_Missense_Mutation_p.G32D|CDC25B_uc010zqm.1_Missense_Mutation_p.G46D|CDC25B_uc002wjl.2_5'UTR|CDC25B_uc002wjm.2_5'UTR|CDC25B_uc002wjo.2_Missense_Mutation_p.G96D|CDC25B_uc002wjp.2_Missense_Mutation_p.G110D|CDC25B_uc002wjq.2_5'Flank	NM_021873	NP_068659	P30305	MPIP2_HUMAN	cell division cycle 25B isoform 1	110					cell division|G2/M transition of mitotic cell cycle|mitosis|positive regulation of cell proliferation	cytosol|microtubule organizing center|nucleoplasm	protein binding|protein tyrosine phosphatase activity			lung(3)|ovary(2)	5						GTCCCCTCAGGTCTCTGCATG	0.463													45	98					0	0	0.870114	0	0
PAK7	57144	broad.mit.edu	37	20	9525015	9525015	+	Splice_Site	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr20:9525015C>T	uc002wnl.2	-	9	2414	c.1869_splice	c.e9+1	p.E623_splice	PAK7_uc002wnk.2_Splice_Site_p.E623_splice|PAK7_uc002wnj.2_Splice_Site_p.E623_splice|PAK7_uc010gby.1_Intron	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7								ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			GACCCCCTTACCTCTGTCCCA	0.542													82	79					0	0	0.870114	0	0
SEC23B	10483	broad.mit.edu	37	20	18511378	18511378	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr20:18511378C>T	uc002wqz.1	+	10	1607	c.1164C>T	c.(1162-1164)TTC>TTT	p.F388F	SEC23B_uc002wra.1_Silent_p.F388F|SEC23B_uc002wrb.1_Silent_p.F388F|SEC23B_uc010zsb.1_Silent_p.F370F|SEC23B_uc002wrc.1_Silent_p.F388F	NM_006363	NP_006354	Q15437	SC23B_HUMAN	Sec23 homolog B	388					ER to Golgi vesicle-mediated transport|intracellular protein transport	COPII vesicle coat|endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane	zinc ion binding			ovary(1)	1						AGCAGACATTCCAAAGAATCT	0.323													34	22					0	0	0.827153	0	0
CD93	22918	broad.mit.edu	37	20	23065072	23065072	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr20:23065072G>A	uc002wsv.2	-	1	1906	c.1758C>T	c.(1756-1758)ATC>ATT	p.I586I		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	586	Helical; (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					CGGTGCCTAGGATGTAGAATA	0.597													48	43					0	0	0.870114	0	0
EPB41L1	2036	broad.mit.edu	37	20	34802352	34802352	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr20:34802352C>T	uc002xfb.2	+	17	2429	c.2258C>T	c.(2257-2259)TCG>TTG	p.S753L	EPB41L1_uc002xeu.2_Intron|EPB41L1_uc010zvo.1_Intron|EPB41L1_uc002xev.2_Missense_Mutation_p.S752L|EPB41L1_uc002xew.2_Missense_Mutation_p.S644L|EPB41L1_uc002xex.2_Missense_Mutation_p.S573L|EPB41L1_uc002xey.2_Intron|EPB41L1_uc002xez.2_Intron|EPB41L1_uc010gfq.2_Missense_Mutation_p.S851L	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	753	Carboxyl-terminal (CTD).				cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					GAGACCATATCGACCACCATG	0.572													8	21					0	0	0.335167	0	0
EMILIN3	90187	broad.mit.edu	37	20	39990079	39990079	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr20:39990079C>T	uc002xjy.1	-	4	2354	c.2130G>A	c.(2128-2130)CTG>CTA	p.L710L		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	710						proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				GCAAGCTGTCCAGGCCCGCGG	0.647													3	10					0	0	0.150653	0	0
PTPRT	11122	broad.mit.edu	37	20	41385114	41385114	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr20:41385114G>A	uc002xkg.2	-	6	1031	c.847C>T	c.(847-849)CTG>TTG	p.L283L	PTPRT_uc010ggj.2_Silent_p.L283L	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	283	Extracellular (Potential).|Ig-like C2-type.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TTCACGATCAGCTCCGCGTAG	0.577													24	24					0	0	0.788014	0	0
TOX2	84969	broad.mit.edu	37	20	42682992	42682992	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr20:42682992G>A	uc002xlf.3	+	5	749	c.732G>A	c.(730-732)CCG>CCA	p.P244P	TOX2_uc010ggo.2_Silent_p.P235P|TOX2_uc002xle.3_Silent_p.P193P|TOX2_uc010ggp.2_Silent_p.P193P|TOX2_uc002xlg.2_Silent_p.P193P|TOX2_uc010zwk.1_Silent_p.P113P	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	244	Nuclear localization signal (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			CCAAGAACCCGAAGAAGAAGA	0.542													7	11					0	0	0.335167	0	0
KCNK15	60598	broad.mit.edu	37	20	43374695	43374696	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr20:43374695_43374696CC>TT	uc002xmr.2	+	1	208_209	c.144_145CC>TT	c.(142-147)CTCCGG>CTTTGG	p.R49W		NM_022358	NP_071753	Q9H427	KCNKF_HUMAN	potassium family, subfamily K, member 15	49						integral to membrane	potassium channel activity|voltage-gated ion channel activity				0		Myeloproliferative disorder(115;0.0122)				GGGGCGCTCTCCGGAGGAAGTT	0.713													3	5					0	0	0.115264	0	0
WFDC8	90199	broad.mit.edu	37	20	44187613	44187613	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr20:44187613G>A	uc002xow.2	-	3	234	c.155C>T	c.(154-156)CCC>CTC	p.P52L	WFDC8_uc002xox.2_Missense_Mutation_p.P52L	NM_181510	NP_852611	Q8IUA0	WFDC8_HUMAN	WAP four-disulfide core domain 8 precursor	52	WAP 1.					extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				CCTCTCTTTGGGACATAACCC	0.428													29	107					0	0	0.819951	0	0
PREX1	57580	broad.mit.edu	37	20	47249085	47249086	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr20:47249085_47249086GG>AA	uc002xtw.1	-	34	4382_4383	c.4359_4360CC>TT	c.(4357-4362)TCCCGC>TCTTGC	p.R1454C	PREX1_uc002xtv.1_Missense_Mutation_p.R751C	NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	1454					actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			CCCTCCAGGCGGGAGGGCAGCT	0.649													12	24					0	0	0.115264	0	0
CTCFL	140690	broad.mit.edu	37	20	56083820	56083820	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr20:56083820G>A	uc010gix.1	-	8	2178	c.1516C>T	c.(1516-1518)CGT>TGT	p.R506C	CTCFL_uc010giw.1_Missense_Mutation_p.R506C|CTCFL_uc002xym.2_Missense_Mutation_p.R506C|CTCFL_uc010giz.1_Missense_Mutation_p.R94C|CTCFL_uc010giy.1_Missense_Mutation_p.R176C|CTCFL_uc010gja.1_Missense_Mutation_p.R456C|CTCFL_uc010gjb.1_Missense_Mutation_p.R506C|CTCFL_uc010gjc.1_Missense_Mutation_p.R506C|CTCFL_uc010gjd.1_Missense_Mutation_p.R506C|CTCFL_uc010gje.2_Missense_Mutation_p.R506C|CTCFL_uc010gjf.2_Missense_Mutation_p.R301C|CTCFL_uc010gjg.2_Missense_Mutation_p.R238C|CTCFL_uc010gjh.1_Missense_Mutation_p.R362C|CTCFL_uc010gji.1_Missense_Mutation_p.R301C|CTCFL_uc010gjj.1_Missense_Mutation_p.R506C|CTCFL_uc010giu.2_5'Flank|CTCFL_uc010giv.2_5'Flank	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	506	C2H2-type 9.				cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			GTGTGGGTACGAATGTGAGCG	0.433													23	31					0	0	0.750413	0	0
EDN3	1908	broad.mit.edu	37	20	57876727	57876727	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr20:57876727G>A	uc002yap.2	+	2	684	c.315G>A	c.(313-315)AAG>AAA	p.K105K	EDN3_uc002yao.1_Silent_p.K105K|EDN3_uc002yaq.2_Silent_p.K105K|EDN3_uc002yar.2_Silent_p.K105K|EDN3_uc002yas.2_Silent_p.K105K	NM_000114	NP_000105	P14138	EDN3_HUMAN	endothelin 3 isoform 1 preproprotein	105					cell surface receptor linked signaling pathway|inositol phosphate-mediated signaling|neutrophil chemotaxis|peptide hormone secretion|positive regulation of heart rate|positive regulation of hormone secretion|positive regulation of leukocyte chemotaxis|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	extracellular space|soluble fraction	endothelin B receptor binding|hormone activity			skin(1)	1	all_lung(29;0.0115)					ACAAGGACAAGGAGTGTGTCT	0.612													64	59					0	0	0.870114	0	0
CDH4	1002	broad.mit.edu	37	20	60348129	60348129	+	Missense_Mutation	SNP	C	T	T	rs145462500		TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr20:60348129C>T	uc002ybn.1	+	4	481	c.467C>T	c.(466-468)CCC>CTC	p.P156L	CDH4_uc002ybp.1_Missense_Mutation_p.P82L	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	156					adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			CTGCCGTGGCCCCAGCACCAG	0.652													8	10					0	0	0.335167	0	0
PRIC285	85441	broad.mit.edu	37	20	62192810	62192810	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr20:62192810G>A	uc002yfm.2	-	14	7738	c.6846C>T	c.(6844-6846)ACC>ACT	p.T2282T	PRIC285_uc002yfl.1_Silent_p.T1713T	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	2282					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			GGTGGTGCAGGGTGATGCTCC	0.637													38	107					0	0	0.870114	0	0
TPTE	7179	broad.mit.edu	37	21	10916373	10916373	+	Missense_Mutation	SNP	G	A	A	rs138794341	byFrequency	TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr21:10916373G>A	uc002yip.1	-	20	1641	c.1273C>T	c.(1273-1275)CCT>TCT	p.P425S	TPTE_uc002yis.1_Intron|TPTE_uc002yiq.1_Missense_Mutation_p.P407S|TPTE_uc002yir.1_Missense_Mutation_p.P387S|TPTE_uc010gkv.1_Missense_Mutation_p.P287S	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	425	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CACTTACGAGGAATCGAATAA	0.388													15	49					0	0	0.557998	0	0
C21orf99	149992	broad.mit.edu	37	21	14439208	14439208	+	RNA	SNP	A	G	G			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr21:14439208A>G	uc002yja.3	+	10		c.2726A>G				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						AAGAGAAGAAATGCCAATATA	0.299													5	18					0	0	0.248553	0	0
HLCS	3141	broad.mit.edu	37	21	38302641	38302642	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr21:38302641_38302642GA>AT	uc010gnb.2	-	5	2289_2290	c.1088_1089TC>AT	c.(1087-1089)GTC>GAT	p.V363D	HLCS_uc002yvs.2_Missense_Mutation_p.V363D|HLCS_uc010gnc.1_Missense_Mutation_p.V510D	NM_000411	NP_000402	P50747	BPL1_HUMAN	holocarboxylase synthetase	363			V -> D (in HLCS deficiency; has normal or low KM values for biotin (non-KM mutant)).		cell proliferation|histone biotinylation|response to biotin	chromatin|cytosol|mitochondrion|nuclear lamina|nuclear matrix	ATP binding|biotin binding|biotin-[acetyl-CoA-carboxylase] ligase activity|biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity|biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity|biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity|enzyme binding			ovary(2)|breast(1)|kidney(1)|liver(1)	5		Myeloproliferative disorder(46;0.0422)			Biotin(DB00121)	TCTCTCTAAGGACTTCGTATCT	0.46													11	25					0	0	0.115264	0	0
DSCAM	1826	broad.mit.edu	37	21	41725649	41725649	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr21:41725649G>A	uc002yyq.1	-	5	1129	c.677C>T	c.(676-678)TCC>TTC	p.S226F	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	226	Extracellular (Potential).|Ig-like C2-type 3.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				ATCCAGTATGGATGGGGCTGA	0.512													5	10					0	0	0.217242	0	0
XKR3	150165	broad.mit.edu	37	22	17288891	17288891	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr22:17288891G>A	uc002zlv.2	-	2	171	c.73C>T	c.(73-75)CTT>TTT	p.L25F	XKR3_uc011agf.1_Missense_Mutation_p.L25F	NM_175878	NP_787074	Q5GH77	XKR3_HUMAN	X Kell blood group precursor-related family,	25						integral to membrane|plasma membrane				large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				CTCTGGCCAAGGACTATTTCT	0.403													39	62					0	0	0.870114	0	0
MICAL3	57553	broad.mit.edu	37	22	18300933	18300933	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr22:18300933G>A	uc002zng.3	-	26	4847	c.4494C>T	c.(4492-4494)CCC>CCT	p.P1498P	MICAL3_uc011agl.1_Silent_p.P1414P|MICAL3_uc010gre.1_5'Flank	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	1498	Pro-rich.					cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		CAGGCTCCCGGGGGGGCCGCA	0.682													7	13					0	0	0.335167	0	0
LOC96610	96610	broad.mit.edu	37	22	23040869	23040869	+	RNA	SNP	A	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr22:23040869A>C	uc011aim.1	+	137		c.8776A>C								Parts of antibodies, mostly variable regions.												0						GACGAGGCTGATTATTACTGC	0.547													39	95					0	0	0.870114	0	0
LOC96610	96610	broad.mit.edu	37	22	23114853	23114853	+	RNA	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr22:23114853G>A	uc011aim.1	+	237		c.11470G>A								Parts of antibodies, mostly variable regions.												0						ATCACCTGTGGGGGAAACAAC	0.527													8	26					0	0	0.278610	0	0
ASPHD2	57168	broad.mit.edu	37	22	26829832	26829832	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr22:26829832G>A	uc003acg.2	+	2	648	c.251G>A	c.(250-252)CGG>CAG	p.R84Q		NM_020437	NP_065170	Q6ICH7	ASPH2_HUMAN	aspartate beta-hydroxylase domain containing 2	84	Lumenal (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity			ovary(1)	1						GAGCAGCCCCGGCCCTACGTC	0.642													36	61					0	0	0.870114	0	0
RFPL1	5988	broad.mit.edu	37	22	29834697	29834697	+	Translation_Start_Site	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr22:29834697C>T	uc003afn.2	+	1	126	c.-83C>T	c.(-85--81)GACGG>GATGG		RFPL1S_uc003afm.1_RNA	NM_021026	NP_066306	O75677	RFPL1_HUMAN	ret finger protein-like 1								zinc ion binding				0						TCTCTGAAGACGGGGGGTGGG	0.468													16	19					0	0	0.500413	0	0
NEFH	4744	broad.mit.edu	37	22	29885739	29885739	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr22:29885739T>A	uc003afo.2	+	4	2181	c.2110T>A	c.(2110-2112)TCC>ACC	p.S704T	NEFH_uc003afp.2_5'UTR	NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	710	30 X 6 AA repeats of K-S-P-[AEPV]-[EAK]- [AEVK].|Tail.|21.				cell death|nervous system development	neurofilament					0						AGAAGCAAAGTCCCCTGAGAA	0.557													5	100					0	0	0.184627	0	0
HMGXB4	10042	broad.mit.edu	37	22	35660861	35660861	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr22:35660861C>T	uc003anl.2	+	5	654	c.480C>T	c.(478-480)CCC>CCT	p.P160P	HMGXB4_uc011amh.1_Silent_p.P51P|HMGXB4_uc003ank.2_Silent_p.P51P	NM_001003681	NP_001003681	Q9UGU5	HMGX4_HUMAN	high-mobility group protein 2-like 1	160					endosome to lysosome transport|negative regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	NURF complex	DNA binding			breast(1)|skin(1)	2						GGGAACTACCCCTAGAGGATG	0.473													20	26					0	0	0.592651	0	0
CSF2RB	1439	broad.mit.edu	37	22	37319396	37319396	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr22:37319396C>T	uc003aqa.3	+	3	404	c.187C>T	c.(187-189)CGC>TGC	p.R63C	CSF2RB_uc003aqc.3_Missense_Mutation_p.R63C	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	63	Extracellular (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	GACCCTCATTCGCCGGGTGAA	0.652													8	16					0	0	0.307466	0	0
GGA1	26088	broad.mit.edu	37	22	38021006	38021006	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr22:38021006C>T	uc003atc.2	+	10	1228	c.863C>T	c.(862-864)ACC>ATC	p.T288I	GGA1_uc003atd.2_Intron|GGA1_uc003ate.2_Missense_Mutation_p.T288I|GGA1_uc003atf.2_Missense_Mutation_p.T215I	NM_013365	NP_037497	Q9UJY5	GGA1_HUMAN	golgi associated, gamma adaptin ear containing,	288	GAT.				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|endosome membrane|Golgi apparatus part	protein binding			breast(2)|ovary(1)	3	Melanoma(58;0.0574)					GACAACCTCACCCAGGTGATC	0.642													3	8					0	0	0.184627	0	0
TRIOBP	11078	broad.mit.edu	37	22	38109300	38109300	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr22:38109300C>T	uc003atr.2	+	5	609	c.338C>T	c.(337-339)CCC>CTC	p.P113L	TRIOBP_uc003atu.2_Intron|TRIOBP_uc003atq.1_Missense_Mutation_p.P113L|TRIOBP_uc003ats.1_Intron	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	113					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GAGGCAGTACCCTATCTGGAG	0.662													50	62					0	0	0.870114	0	0
DMC1	11144	broad.mit.edu	37	22	38934315	38934315	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr22:38934315G>A	uc003avz.1	-	11	935	c.760C>T	c.(760-762)CAA>TAA	p.Q254*	DMC1_uc011anv.1_Nonsense_Mutation_p.Q199*	NM_007068	NP_008999	Q14565	DMC1_HUMAN	DMC1 dosage suppressor of mck1 homolog	254					reciprocal meiotic recombination	condensed nuclear chromosome	ATP binding|DNA binding|DNA-dependent ATPase activity|protein binding			ovary(1)	1	Melanoma(58;0.0286)					GAGATTTTTTGGAGTCGTGAC	0.413								Homologous_recombination					20	36					0	0	0.693898	0	0
FAM116B	414918	broad.mit.edu	37	22	50757306	50757306	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr22:50757306A>G	uc011aru.1	-	4	301	c.229T>C	c.(229-231)TGC>CGC	p.C77R	FAM116B_uc011arv.1_Missense_Mutation_p.C77R	NM_001001794	NP_001001794	Q8NEG7	F116B_HUMAN	family with sequence similarity 116, member B	77											0		all_cancers(38;4.34e-09)|all_epithelial(38;3.03e-08)|all_lung(38;0.00141)|Breast(42;0.00387)|Lung NSC(38;0.0199)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GACAGGTAGCAGATGCTGCTT	0.597													18	18					0	0	0.667858	0	0
CHL1	10752	broad.mit.edu	37	3	432737	432737	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:432737C>T	uc003bou.2	+	21	2909	c.2638C>T	c.(2638-2640)CCT>TCT	p.P880S	CHL1_uc003bot.2_Missense_Mutation_p.P896S|CHL1_uc003bow.1_Missense_Mutation_p.P880S|CHL1_uc011asi.1_Missense_Mutation_p.P896S	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	880	Fibronectin type-III 3.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		TGGAATGGTTCCTTCCTTAGA	0.368													19	27					0	0	0.575678	0	0
CNTN6	27255	broad.mit.edu	37	3	1369179	1369179	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:1369179G>A	uc003boz.2	+	10	1389	c.1122G>A	c.(1120-1122)ACG>ACA	p.T374T	CNTN6_uc011asj.1_Silent_p.T302T|CNTN6_uc003bpa.2_Silent_p.T374T	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	374	Ig-like C2-type 4.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		TCATCATAACGATGCTGAATG	0.299													21	25					0	0	0.693898	0	0
CNTN6	27255	broad.mit.edu	37	3	1424750	1424750	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:1424750G>A	uc003boz.2	+	18	2558	c.2291G>A	c.(2290-2292)AGA>AAA	p.R764K	CNTN6_uc011asj.1_Missense_Mutation_p.R692K|CNTN6_uc003bpa.2_Missense_Mutation_p.R764K	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	764	Fibronectin type-III 2.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		TTTGTCTACAGAAATGAAAGC	0.458													39	48					0	0	0.870114	0	0
CNTN6	27255	broad.mit.edu	37	3	1443200	1443200	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:1443200G>A	uc003boz.2	+	21	3055	c.2788G>A	c.(2788-2790)GAA>AAA	p.E930K	CNTN6_uc011asj.1_Missense_Mutation_p.E858K|CNTN6_uc003bpa.2_Missense_Mutation_p.E930K	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	930	Fibronectin type-III 4.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		AAAAACCATGGAAAATGAGTC	0.368													12	15					0	0	0.435327	0	0
SRGAP3	9901	broad.mit.edu	37	3	9055154	9055154	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:9055154G>A	uc003brf.1	-	17	2661	c.1985C>T	c.(1984-1986)ACC>ATC	p.T662I	SRGAP3_uc003brg.1_Missense_Mutation_p.T638I	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	662	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		GTGCATGAGGGTAGGCCCGAA	0.532			T	RAF1	pilocytic astrocytoma								15	26					0	0	0.520397	0	0
C3orf31	132001	broad.mit.edu	37	3	11885563	11885563	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:11885563G>A	uc003bwh.2	-	2	500	c.258C>T	c.(256-258)TCC>TCT	p.S86S	C3orf31_uc003bwj.2_Silent_p.S86S|C3orf31_uc003bwi.2_RNA|C3orf31_uc011auo.1_Silent_p.S86S|C3orf31_uc011aup.1_RNA|C3orf31_uc010hdy.1_RNA	NM_138807	NP_620162	Q96BW9	MMP37_HUMAN	MMP37-like protein, mitochondrial precursor	86					protein import into mitochondrial matrix	extrinsic to mitochondrial inner membrane					0						TATTCTGGATGGACGTGATAA	0.418													15	29					0	0	0.500413	0	0
SATB1	6304	broad.mit.edu	37	3	18436006	18436006	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:18436006C>T	uc003cbh.2	-	7	2889	c.1154G>A	c.(1153-1155)CGA>CAA	p.R385Q	SATB1_uc003cbi.2_Missense_Mutation_p.R385Q|SATB1_uc003cbj.2_Missense_Mutation_p.R385Q	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	385	CUT 1.				cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						GATTCCTGCTCGTTTCAGTTC	0.463													76	107					0	0	0.870114	0	0
KCNH8	131096	broad.mit.edu	37	3	19575158	19575158	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:19575158C>T	uc003cbk.1	+	16	3086	c.2891C>T	c.(2890-2892)TCC>TTC	p.S964F	KCNH8_uc010hex.1_Missense_Mutation_p.S425F	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	964	Ser-rich.|Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						GTGGATCCCTCCTCTGTGGGG	0.502													42	57					0	0	0.870114	0	0
DCLK3	85443	broad.mit.edu	37	3	36779466	36779466	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:36779466G>A	uc003cgi.2	-	2	1176	c.685C>T	c.(685-687)CCA>TCA	p.P229S		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	229						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						TGATCCTCTGGGCCTCTGTCC	0.572													36	38					0	0	0.853193	0	0
SCN5A	6331	broad.mit.edu	37	3	38647496	38647496	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:38647496C>T	uc003cio.2	-	10	1478	c.1284G>A	c.(1282-1284)GAG>GAA	p.E428E	SCN5A_uc003cin.2_Silent_p.E428E|SCN5A_uc003cil.3_Silent_p.E428E|SCN5A_uc010hhi.2_Silent_p.E428E|SCN5A_uc010hhk.2_Silent_p.E428E|SCN5A_uc011ayr.1_Silent_p.E428E|SCN5A_uc010hhj.1_Silent_p.E39E	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	428			E -> K (found in patients with atrial fibrillation).		blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TTTCCTTCTCCTCGGTCTCAG	0.562													15	36					0	0	0.539581	0	0
ULK4	54986	broad.mit.edu	37	3	41961249	41961249	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:41961249G>A	uc003ckv.3	-	6	804	c.603C>T	c.(601-603)GAC>GAT	p.D201D	ULK4_uc003ckw.2_Silent_p.D201D|ULK4_uc003ckx.1_Silent_p.D201D	NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4	201	Protein kinase.						ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		AAGACCAGAGGTCACTGGAGA	0.413													56	113					0	0	0.870114	0	0
KIF15	56992	broad.mit.edu	37	3	44844305	44844305	+	Splice_Site	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:44844305G>A	uc003cnx.3	+	14	1659	c.1510_splice	c.e14-1	p.I504_splice	KIF15_uc010hiq.2_Splice_Site_p.I407_splice|KIF15_uc003cny.1_Splice_Site_p.I139_splice	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15						blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		CTATGTCACAGATAGAGCACC	0.343													42	57					0	0	0.870114	0	0
CCRL2	9034	broad.mit.edu	37	3	46450193	46450193	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:46450193T>C	uc003cpp.3	+	2	908	c.623T>C	c.(622-624)GTT>GCT	p.V208A	CCRL2_uc010hjg.2_Missense_Mutation_p.V220A|CCRL2_uc010hjf.2_Missense_Mutation_p.V208A	NM_003965	NP_003956	O00421	CCRL2_HUMAN	chemokine (C-C motif) receptor-like 2 isoform 1	208	Helical; Name=5; (Potential).				chemotaxis|inflammatory response	integral to plasma membrane	CCR chemokine receptor binding|chemokine receptor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)		AACATTTCGGTTCTTGTCCTC	0.388													33	55					0	0	0.804634	0	0
QRICH1	54870	broad.mit.edu	37	3	49069662	49069662	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:49069662G>A	uc010hkq.2	-	10	2388	c.2092C>T	c.(2092-2094)CCA>TCA	p.P698S	IMPDH2_uc003cvt.2_5'Flank|IMPDH2_uc010hkp.1_5'Flank|QRICH1_uc003cvu.2_Missense_Mutation_p.P698S|QRICH1_uc003cvv.2_Missense_Mutation_p.P698S	NM_198880	NP_942581	Q2TAL8	QRIC1_HUMAN	glutamine-rich 1	698								p.P698P(1)		ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.88e-05)|Kidney(197;0.00239)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)		CATCTCAATGGATTCTCTGGA	0.458													32	35					0	0	0.847076	0	0
BSN	8927	broad.mit.edu	37	3	49692966	49692966	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:49692966G>A	uc003cxe.3	+	5	6091	c.5977G>A	c.(5977-5979)GGC>AGC	p.G1993S		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	1993					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GGCTGAGGCTGGCCTCAACTA	0.622													19	53					0	0	0.592651	0	0
RRP9	9136	broad.mit.edu	37	3	51967557	51967557	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:51967557G>A	uc003dbw.1	-	15	1432	c.1393C>T	c.(1393-1395)CGC>TGC	p.R465C		NM_004704	NP_004695	O43818	U3IP2_HUMAN	RNA, U3 small nucleolar interacting protein 2	465					rRNA processing	nucleolus|small nuclear ribonucleoprotein complex|small nucleolar ribonucleoprotein complex	RNA binding			breast(2)|ovary(1)	3				BRCA - Breast invasive adenocarcinoma(193;8.04e-05)|Kidney(197;0.000553)|KIRC - Kidney renal clear cell carcinoma(197;0.000724)		GGGACCCTGCGGAGTGGGATG	0.552													26	47					0	0	0.740014	0	0
DNAH1	25981	broad.mit.edu	37	3	52404564	52404564	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:52404564C>T	uc011bef.1	+	40	6591	c.6330C>T	c.(6328-6330)TCC>TCT	p.S2110S		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	2110					ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		TCATCTTCTCCCTGATCTGGA	0.567													9	14					0	0	0.361761	0	0
CADPS	8618	broad.mit.edu	37	3	62423879	62423880	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:62423879_62423880CC>TT	uc003dll.2	-	28	4036_4037	c.3676_3677GG>AA	c.(3676-3678)GGG>AAG	p.G1226K	CADPS_uc003dlj.1_Missense_Mutation_p.G181K|CADPS_uc003dlk.1_Missense_Mutation_p.G674K|CADPS_uc003dlm.2_Missense_Mutation_p.G1187K|CADPS_uc003dln.2_Missense_Mutation_p.G1147K	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	1226	Mediates targeting and association with DCVs (By similarity).				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		CACGTCCATCCCGGGTTTCTGT	0.46													15	25					0	0	0.115264	0	0
CADM2	253559	broad.mit.edu	37	3	85984971	85984971	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:85984971C>T	uc003dqj.2	+	6	1354	c.728C>T	c.(727-729)CCT>CTT	p.P243L	CADM2_uc003dqk.2_Missense_Mutation_p.P252L|CADM2_uc003dql.2_Missense_Mutation_p.P245L	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	243	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		GAAGGACAGCCTTTAATTTTG	0.303													40	67					0	0	0.870114	0	0
OR5AC2	81050	broad.mit.edu	37	3	97806033	97806033	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:97806033G>A	uc011bgs.1	+	1	17	c.17G>A	c.(16-18)GGA>GAA	p.G6E		NM_054106	NP_473447	Q9NZP5	O5AC2_HUMAN	olfactory receptor, family 5, subfamily AC,	6	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ATATCAGAGGGAAATAAGACT	0.373													51	91					0	0	0.870114	0	0
OR5AC2	81050	broad.mit.edu	37	3	97806188	97806188	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:97806188C>T	uc011bgs.1	+	1	172	c.172C>T	c.(172-174)CAT>TAT	p.H58Y		NM_054106	NP_473447	Q9NZP5	O5AC2_HUMAN	olfactory receptor, family 5, subfamily AC,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CCCCCATCTTCATATGCCCAT	0.443													74	139					0	0	0.870114	0	0
TBC1D23	55773	broad.mit.edu	37	3	100002625	100002625	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:100002625T>A	uc003dtt.2	+	4	623	c.446T>A	c.(445-447)TTT>TAT	p.F149Y	TBC1D23_uc003dts.2_Missense_Mutation_p.F149Y	NM_018309	NP_060779	Q9NUY8	TBC23_HUMAN	TBC1 domain family, member 23	149	Rab-GAP TBC.					intracellular	Rab GTPase activator activity			ovary(1)|liver(1)	2						TACAACTGCTTTTATGCCATA	0.358													39	63					0	0	0.870114	0	0
ZPLD1	131368	broad.mit.edu	37	3	102189262	102189262	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:102189262G>A	uc003dvs.1	+	16	1840	c.958G>A	c.(958-960)GAT>AAT	p.D320N	ZPLD1_uc003dvt.1_Missense_Mutation_p.D336N|ZPLD1_uc011bhg.1_Missense_Mutation_p.D320N	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	320	ZP.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						AGAAAGGAGAGATGCTGGGAG	0.512													19	40					0	0	0.639603	0	0
IFT57	55081	broad.mit.edu	37	3	107940986	107940986	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:107940986G>A	uc003dwx.3	-	1	432	c.184C>T	c.(184-186)CGG>TGG	p.R62W		NM_018010	NP_060480	Q9NWB7	IFT57_HUMAN	estrogen-related receptor beta like 1	62					activation of caspase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cilium|microtubule basal body	DNA binding|protein binding			ovary(1)|skin(1)|pancreas(1)	3			OV - Ovarian serous cystadenocarcinoma(3;0.0428)|Epithelial(53;0.246)			TTGCTCTTCCGGAGGAACTCC	0.682													5	8					0	0	0.248553	0	0
DPPA2	151871	broad.mit.edu	37	3	109023446	109023446	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:109023446G>A	uc003dxo.2	-	7	977	c.730C>T	c.(730-732)CAT>TAT	p.H244Y		NM_138815	NP_620170	Q7Z7J5	DPPA2_HUMAN	developmental pluripotency associated 2	244						nucleus	nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)	3						TGACCTGCATGAAACTGCAGG	0.502													34	46					0	0	0.864702	0	0
CD96	10225	broad.mit.edu	37	3	111319573	111319573	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:111319573G>A	uc003dxw.2	+	8	1117	c.947G>A	c.(946-948)GGA>GAA	p.G316E	CD96_uc003dxv.2_Missense_Mutation_p.G300E|CD96_uc003dxx.2_Missense_Mutation_p.G300E|CD96_uc010hpy.1_Missense_Mutation_p.G300E	NM_198196	NP_937839	P40200	TACT_HUMAN	CD96 antigen isoform 1 precursor	316	Extracellular (Potential).|Ig-like C2-type.				cell adhesion|immune response|regulation of immune response	integral to plasma membrane				skin(2)|central_nervous_system(1)	3						TGTCTGGCAGGAATATATATT	0.363									Opitz_Trigonocephaly_syndrome				16	44					0	0	0.624587	0	0
SLC9A10	285335	broad.mit.edu	37	3	111936300	111936300	+	Silent	SNP	C	T	T	rs139599943		TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:111936300C>T	uc003dyu.2	-	15	2001	c.1779G>A	c.(1777-1779)GAG>GAA	p.E593E	SLC9A10_uc011bhu.1_5'UTR|SLC9A10_uc010hqc.2_Silent_p.E545E	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	593					cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						TTGATGGGCCCTCTTTTTCCT	0.294													17	30					0	0	0.639603	0	0
CCDC52	152185	broad.mit.edu	37	3	113212090	113212090	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:113212090G>A	uc003eag.3	-	6	746	c.455C>T	c.(454-456)ACC>ATC	p.T152I	CCDC52_uc003eaf.3_RNA|CCDC52_uc003eah.1_Missense_Mutation_p.T48I	NM_144718	NP_653319	Q8N0Z3	SPICE_HUMAN	coiled-coil domain containing 52	152					cell division|mitosis	centriole|spindle	protein binding				0						GATAGATTGGGTGATAGGGTC	0.413													18	41					0	0	0.654019	0	0
ZNF80	7634	broad.mit.edu	37	3	113955275	113955276	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:113955275_113955276GG>TT	uc010hqo.2	-	1	1150_1151	c.646_647CC>AA	c.(646-648)CCC>AAC	p.P216N	ZNF80_uc003ebf.2_RNA	NM_007136	NP_009067	P51504	ZNF80_HUMAN	zinc finger protein 80	216						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(201;0.0233)|all_neural(597;0.0837)				GCACTCGTAGGGCTTTCCTGCA	0.49													31	59					0	0	0.115264	0	0
ZNF80	7634	broad.mit.edu	37	3	113955903	113955903	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:113955903C>T	uc010hqo.2	-	1	523	c.19G>A	c.(19-21)GGG>AGG	p.G7R	ZNF80_uc003ebf.2_RNA	NM_007136	NP_009067	P51504	ZNF80_HUMAN	zinc finger protein 80	7						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(201;0.0233)|all_neural(597;0.0837)				GTCCCCAACCCATCGCGTTTA	0.488													37	86					0	0	0.870114	0	0
STXBP5L	9515	broad.mit.edu	37	3	120973775	120973775	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:120973775C>T	uc003eec.3	+	16	1615	c.1475C>T	c.(1474-1476)TCA>TTA	p.S492L	STXBP5L_uc011bji.1_Missense_Mutation_p.S492L	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	492					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		CTAAAAACTTCAAAAGTGTTT	0.338													24	10					0	0	0.693898	0	0
ZNF148	7707	broad.mit.edu	37	3	124951262	124951262	+	Missense_Mutation	SNP	G	A	A	rs137930153		TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:124951262G>A	uc003ehx.3	-	9	2794	c.2308C>T	c.(2308-2310)CCC>TCC	p.P770S	SLC12A8_uc003ehw.3_Intron|ZNF148_uc003ehz.3_Missense_Mutation_p.P770S|ZNF148_uc010hsa.2_Missense_Mutation_p.P770S|ZNF148_uc003eia.3_Missense_Mutation_p.P770S|ZNF148_uc003ehy.2_Missense_Mutation_p.P107S	NM_021964	NP_068799	Q9UQR1	ZN148_HUMAN	zinc finger protein 148	770					cellular defense response|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|zinc ion binding	p.P770S(1)		skin(2)|ovary(1)|pancreas(1)	4						TTCACCAAGGGAAATTCTGAA	0.408													18	34					0	0	0.608945	0	0
SLC41A3	54946	broad.mit.edu	37	3	125752456	125752456	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:125752456G>A	uc003eij.2	-	4	673	c.447C>T	c.(445-447)CTC>CTT	p.L149L	SLC41A3_uc003eii.2_Silent_p.L123L|SLC41A3_uc003eil.2_Silent_p.L149L|SLC41A3_uc003eik.2_Silent_p.L113L|SLC41A3_uc011bkh.1_Silent_p.L32L|SLC41A3_uc010hsd.1_Silent_p.L164L	NM_001008485	NP_001008485	Q96GZ6	S41A3_HUMAN	solute carrier family 41, member 3 isoform 1	149						integral to membrane|plasma membrane	cation transmembrane transporter activity				0				GBM - Glioblastoma multiforme(114;0.167)		TCACCTGGATGAGGGCCAGGT	0.557													8	16					0	0	0.387290	0	0
RAB43	339122	broad.mit.edu	37	3	128813986	128813986	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:128813986C>T	uc003eln.1	-	2	518	c.231G>A	c.(229-231)CAG>CAA	p.Q77Q	RAB43_uc003elo.1_Missense_Mutation_p.R293K|RAB43_uc010hsy.1_Silent_p.Q77Q	NM_198490	NP_940892	Q86YS6	RAB43_HUMAN	RAB43 protein	77	GTP (By similarity).				protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			lung(1)	1						GGAACCGCTCCTGGCCGGCCG	0.592													14	28					0	0	0.608945	0	0
WWTR1	25937	broad.mit.edu	37	3	149290664	149290664	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:149290664G>A	uc003exe.2	-	2	571	c.555C>T	c.(553-555)TCC>TCT	p.S185S	WWTR1_uc003exf.2_Silent_p.S185S|WWTR1_uc011bns.1_Silent_p.S185S|WWTR1_uc003exh.2_Silent_p.S185S	NM_015472	NP_056287	Q9GZV5	WWTR1_HUMAN	WW domain containing transcription regulator 1	185					hippo signaling cascade|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of protein kinase activity|negative regulation of protein phosphorylation|positive regulation of cell proliferation|positive regulation of epithelial to mesenchymal transition|regulation of SMAD protein import into nucleus|stem cell division|transcription, DNA-dependent	cytoplasm	transcription coactivator activity			breast(3)|skin(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			GATTTGGCTGGGATACTGCCA	0.353													35	40					0	0	0.796494	0	0
SELT	51714	broad.mit.edu	37	3	150344871	150344871	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:150344871G>A	uc011bnx.1	+	6	622	c.538G>A	c.(538-540)GAA>AAA	p.E180K		NM_016275	NP_057359	P62341	SELT_HUMAN	selenoprotein T precursor	180					cell redox homeostasis|selenocysteine incorporation		selenium binding				0			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			TCTTGACAATGAAATGAAGCT	0.403													53	79					0	0	0.870114	0	0
FAM194A	131831	broad.mit.edu	37	3	150391765	150391765	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:150391765G>A	uc003eyg.2	-	11	1378	c.1321C>T	c.(1321-1323)CCA>TCA	p.P441S	FAM194A_uc003eyh.2_Missense_Mutation_p.P295S	NM_152394	NP_689607	Q7L0X2	F194A_HUMAN	hypothetical protein LOC131831	441										skin(2)|ovary(1)	3						GTCCCATCTGGAAATGAAGTC	0.328													31	53					0	0	0.804634	0	0
LEKR1	389170	broad.mit.edu	37	3	156763413	156763413	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:156763413G>A	uc003fba.1	+	14	2376	c.1041G>A	c.(1039-1041)CCG>CCA	p.P347P		NM_001004316	NP_001004316	Q6ZMV7	LEKR1_HUMAN	leucine, glutamate and lysine rich 1	Error:Variant_position_missing_in_D3DNK7_after_alignment											0			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			CAGATAAGCCGAAGAGGGTTA	0.532													71	70					0	0	0.870114	0	0
GFM1	85476	broad.mit.edu	37	3	158376735	158376735	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:158376735T>C	uc003fce.2	+	9	1215	c.1108T>C	c.(1108-1110)TAT>CAT	p.Y370H	GFM1_uc003fcd.2_Missense_Mutation_p.Y370H|GFM1_uc003fcf.2_RNA|GFM1_uc003fcg.2_Missense_Mutation_p.Y301H	NM_024996	NP_079272	Q96RP9	EFGM_HUMAN	G elongation factor, mitochondrial 1 precursor	370					mitochondrial translational elongation	mitochondrion	GTP binding|GTPase activity|translation elongation factor activity			ovary(3)|central_nervous_system(1)	4			Lung(72;0.00309)|LUSC - Lung squamous cell carcinoma(72;0.0043)			ACAATTAACTTATGTTCGCAG	0.408													27	30					0	0	0.779181	0	0
SI	6476	broad.mit.edu	37	3	164739070	164739070	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:164739070G>A	uc003fei.2	-	27	3263	c.3201C>T	c.(3199-3201)ATC>ATT	p.I1067I		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1067	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	GATTTTCCTTGATTTCCACAT	0.343										HNSCC(35;0.089)			61	93					0	0	0.870114	0	0
SERPINI2	5276	broad.mit.edu	37	3	167167187	167167187	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:167167187G>A	uc003fer.1	-	6	1026	c.968C>T	c.(967-969)TCA>TTA	p.S323L	SERPINI2_uc003fes.1_Missense_Mutation_p.S333L|SERPINI2_uc003fet.1_Missense_Mutation_p.S323L	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	323					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						CACTTCAGATGAATCTGGTTA	0.294													6	8					0	0	0.217242	0	0
SAMD7	344658	broad.mit.edu	37	3	169639031	169639031	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:169639031C>T	uc003fgd.2	+	4	383	c.116C>T	c.(115-117)ACT>ATT	p.T39I	SAMD7_uc003fge.2_Missense_Mutation_p.T39I|SAMD7_uc011bpo.1_5'UTR	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	39										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			GTAGCTCCAACTGACCCAAGA	0.413													58	89					0	0	0.870114	0	0
KLHL24	54800	broad.mit.edu	37	3	183381296	183381296	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:183381296T>C	uc003flv.2	+	4	1266	c.971T>C	c.(970-972)GTT>GCT	p.V324A	KLHL24_uc003flw.2_Missense_Mutation_p.V324A|KLHL24_uc003flx.2_Missense_Mutation_p.V324A	NM_017644	NP_060114	Q6TFL4	KLH24_HUMAN	DRE1 protein	324	Kelch 1.					axon|cytoplasm|perikaryon				ovary(1)	1	all_cancers(143;2.88e-10)|Ovarian(172;0.0303)		all cancers(12;1.43e-42)|Epithelial(37;1.73e-36)|OV - Ovarian serous cystadenocarcinoma(80;8.75e-22)			TGTGAGCGAGTTGGAGGATTT	0.358													73	93					0	0	0.870114	0	0
YEATS2	55689	broad.mit.edu	37	3	183495355	183495355	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:183495355C>T	uc003fly.2	+	19	2798	c.2603C>T	c.(2602-2604)TCA>TTA	p.S868L	YEATS2_uc003flz.2_5'UTR	NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	868					histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			GGCCAGCCATCACCCCAGACT	0.423													29	31					0	0	0.819951	0	0
ZDHHC19	131540	broad.mit.edu	37	3	195936311	195936311	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr3:195936311G>A	uc003fwc.2	-	3	458	c.344C>T	c.(343-345)CCA>CTA	p.P115L	ZDHHC19_uc010hzz.2_RNA|ZDHHC19_uc010iaa.2_RNA|ZDHHC19_uc010iab.2_RNA	NM_001039617	NP_001034706	Q8WVZ1	ZDH19_HUMAN	zinc finger, DHHC domain containing 19	115	DHHC-type.					integral to membrane	acyltransferase activity|zinc ion binding			ovary(3)	3	all_cancers(143;1.68e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.89e-25)|all cancers(36;1.46e-23)|OV - Ovarian serous cystadenocarcinoma(49;2.1e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.0022)		GCAGCACTTTGGACACCATTG	0.657													8	13					0	0	0.361761	0	0
ZNF595	152687	broad.mit.edu	37	4	86669	86669	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr4:86669G>A	uc003fzv.1	+	6	1431	c.1275G>A	c.(1273-1275)ACG>ACA	p.T425T	ZNF595_uc003fzu.1_Intron|ZNF718_uc003fzt.3_Intron|ZNF595_uc011bus.1_Silent_p.T193T|ZNF595_uc011but.1_Silent_p.T193T	NM_182524	NP_872330	Q7Z3I0	Q7Z3I0_HUMAN	zinc finger protein 595	425					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0		all_cancers(4;0.0738)|all_epithelial(65;0.139)		Lung(54;0.0654)|Epithelial(2;0.0921)|all cancers(2;0.146)|LUSC - Lung squamous cell carcinoma(95;0.173)		AACCCTACACGTGCGAAGAAT	0.393													5	38					0	0	0.184627	0	0
ZNF595	152687	broad.mit.edu	37	4	86672	86672	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr4:86672C>T	uc003fzv.1	+	6	1434	c.1278C>T	c.(1276-1278)TGC>TGT	p.C426C	ZNF595_uc003fzu.1_Intron|ZNF718_uc003fzt.3_Intron|ZNF595_uc011bus.1_Silent_p.C194C|ZNF595_uc011but.1_Silent_p.C194C	NM_182524	NP_872330	Q7Z3I0	Q7Z3I0_HUMAN	zinc finger protein 595	426					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0		all_cancers(4;0.0738)|all_epithelial(65;0.139)		Lung(54;0.0654)|Epithelial(2;0.0921)|all cancers(2;0.146)|LUSC - Lung squamous cell carcinoma(95;0.173)		CCTACACGTGCGAAGAATGTG	0.388													5	38					0	0	0.184627	0	0
ADD1	118	broad.mit.edu	37	4	2927835	2927835	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr4:2927835G>A	uc003gfr.2	+	14	2045	c.1857G>A	c.(1855-1857)GAG>GAA	p.E619E	ADD1_uc003gfn.2_Intron|ADD1_uc003gfo.2_Silent_p.E650E|ADD1_uc003gfp.2_Silent_p.E619E|ADD1_uc003gfq.2_Silent_p.E650E|ADD1_uc003gfs.2_Silent_p.E650E	NM_001119	NP_001110	P35611	ADDA_HUMAN	adducin 1 (alpha) isoform a	619					actin filament bundle assembly|barbed-end actin filament capping|cellular component disassembly involved in apoptosis|positive regulation of protein binding	cytosol|F-actin capping protein complex|nucleus|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding|transcription factor binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		TCAAGCTGGAGGAAGGTGAGC	0.632													26	5					0	0	0.760397	0	0
TADA2B	93624	broad.mit.edu	37	4	7056214	7056214	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr4:7056214C>T	uc003gjw.3	+	2	847	c.696C>T	c.(694-696)TTC>TTT	p.F232F	TADA2B_uc010idi.2_Silent_p.F157F	NM_152293	NP_689506	Q86TJ2	TAD2B_HUMAN	transcriptional adaptor 2 (ADA2 homolog,	232					regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|zinc ion binding				0						TGCCAGCCTTCCTGGGGAAGG	0.582													41	17					0	0	0.859065	0	0
SH3TC1	54436	broad.mit.edu	37	4	8221094	8221094	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr4:8221094C>T	uc003gkv.3	+	9	1050	c.949C>T	c.(949-951)CAG>TAG	p.Q317*	SH3TC1_uc003gkw.3_Nonsense_Mutation_p.Q241*|SH3TC1_uc003gkx.3_RNA	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	317	SH3.						binding			large_intestine(2)|pancreas(1)	3						GGCAGACTTCCAGGGCTCGGG	0.677													20	33					0	0	0.693898	0	0
DRD5	1816	broad.mit.edu	37	4	9784592	9784592	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr4:9784592C>T	uc003gmb.3	+	1	1335	c.939C>T	c.(937-939)TTC>TTT	p.F313F		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	313	Helical; Name=6; (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	TGCCCTTCTTCATCCTTAACT	0.597													32	22					0	0	0.804634	0	0
BEND4	389206	broad.mit.edu	37	4	42145696	42145696	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr4:42145696G>A	uc003gwn.2	-	3	1383	c.803C>T	c.(802-804)TCG>TTG	p.S268L	BEND4_uc003gwm.2_Missense_Mutation_p.S268L|BEND4_uc011byy.1_Missense_Mutation_p.S268L	NM_207406	NP_997289	Q6ZU67	BEND4_HUMAN	BEN domain containing 4 isoform a	268											0						ACTGGCTGACGAGGGGTTTGG	0.493													13	6					0	0	0.479597	0	0
CORIN	10699	broad.mit.edu	37	4	47676496	47676496	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr4:47676496C>T	uc003gxm.2	-	10	1364	c.1271G>A	c.(1270-1272)GGA>GAA	p.G424E	CORIN_uc011bzf.1_Missense_Mutation_p.G285E|CORIN_uc011bzg.1_Missense_Mutation_p.G357E|CORIN_uc011bzh.1_Missense_Mutation_p.G387E|CORIN_uc011bzi.1_Missense_Mutation_p.G387E	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	424	Extracellular (Potential).				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						TCTTTGGTCTCCTTCTTGACA	0.433													45	15					0	0	0.870114	0	0
CORIN	10699	broad.mit.edu	37	4	47746434	47746434	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr4:47746434C>T	uc003gxm.2	-	5	877	c.784G>A	c.(784-786)GAA>AAA	p.E262K	CORIN_uc011bzf.1_Missense_Mutation_p.E123K|CORIN_uc011bzg.1_Missense_Mutation_p.E195K|CORIN_uc011bzh.1_Missense_Mutation_p.E262K|CORIN_uc011bzi.1_Missense_Mutation_p.E262K|CORIN_uc003gxn.3_Missense_Mutation_p.E262K	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	262	Extracellular (Potential).				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						TTTCCGTTTTCCTGCTGAGGT	0.308													51	19					0	0	0.870114	0	0
KDR	3791	broad.mit.edu	37	4	55984957	55984957	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr4:55984957C>T	uc003has.2	-	3	474	c.172G>A	c.(172-174)GAC>AAC	p.D58N	KDR_uc003hat.1_Missense_Mutation_p.D58N|KDR_uc011bzx.1_Missense_Mutation_p.D58N	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	58	Ig-like C2-type 1.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	CAGTCCAAGTCCCTCTGTCCC	0.438			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			29	14					0	0	0.804634	0	0
STAP1	26228	broad.mit.edu	37	4	68459042	68459042	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr4:68459042G>A	uc003hde.3	+	8	876	c.794G>A	c.(793-795)AGA>AAA	p.R265K	STAP1_uc003hdf.2_Missense_Mutation_p.R265K	NM_012108	NP_036240	Q9ULZ2	STAP1_HUMAN	signal transducing adaptor family member 1	265	SH2.				cellular membrane fusion|intracellular protein transport	cytoplasm					0						GGAAATTTAAGACCATTTATA	0.318													34	17					0	0	0.840704	0	0
Unknown	0	broad.mit.edu	37	4	88814829	88814829	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr4:88814829G>A	uc010iko.1	+	4	1456	c.1456G>A	c.(1456-1458)GAC>AAC	p.D486N						SubName: Full=Heat shock protein 90kDa alpha (Cytosolic), class B member 1, isoform CRA_a; SubName: Full=cDNA, FLJ92550, Homo sapiens heat shock 90kDa protein 1, beta (HSPCB), mRNA;																		GGCACTTCGGGACAACTCCAC	0.547													11	25					0	0	0.435327	0	0
HERC6	55008	broad.mit.edu	37	4	89326115	89326115	+	Nonsense_Mutation	SNP	A	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr4:89326115A>T	uc011cdi.1	+	9	1363	c.1180A>T	c.(1180-1182)AAA>TAA	p.K394*	HERC6_uc011cdj.1_Nonsense_Mutation_p.K394*|HERC6_uc011cdk.1_Intron|HERC6_uc011cdl.1_Intron	NM_017912	NP_060382	Q8IVU3	HERC6_HUMAN	hect domain and RLD 6 isoform 1	394					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytosol	ubiquitin-protein ligase activity			lung(3)|ovary(1)|kidney(1)	5		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000222)		GATAGCAGTGAAAAGAAGAAG	0.433													20	35					0	0	0.706142	0	0
PDLIM5	10611	broad.mit.edu	37	4	95583616	95583616	+	Silent	SNP	T	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr4:95583616T>C	uc003hti.2	+	12	1780	c.1629T>C	c.(1627-1629)TTT>TTC	p.F543F	PDLIM5_uc011cdx.1_Silent_p.F440F|PDLIM5_uc003hth.2_Silent_p.F434F|PDLIM5_uc003htj.2_Silent_p.F218F|PDLIM5_uc003htk.2_Silent_p.F572F|PDLIM5_uc011cdy.1_Silent_p.F421F|PDLIM5_uc003htl.2_Silent_p.F218F	NM_006457	NP_006448	Q96HC4	PDLI5_HUMAN	PDZ and LIM domain 5 isoform a	543	LIM zinc-binding 3.				regulation of dendritic spine morphogenesis|regulation of synaptogenesis	actin cytoskeleton|cell junction|cytosol|postsynaptic density|postsynaptic membrane|synaptosome	actin binding|actinin binding|protein kinase C binding|zinc ion binding			ovary(1)|skin(1)	2		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.84e-09)		GATGTGAATTTCCCATAGAAG	0.388													43	23					0	0	0.870114	0	0
CENPE	1062	broad.mit.edu	37	4	104029996	104029996	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr4:104029996G>A	uc003hxb.1	-	48	8065	c.7975C>T	c.(7975-7977)CGC>TGC	p.R2659C	CENPE_uc003hxc.1_Missense_Mutation_p.R2538C	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	2659	Globular autoinhibitory domain (By similarity).				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TCAAAATAGCGAACTGGATGA	0.368													27	7					0	0	0.729181	0	0
SPATA5	166378	broad.mit.edu	37	4	124235123	124235123	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr4:124235123C>T	uc003iez.3	+	16	2659	c.2586C>T	c.(2584-2586)TTC>TTT	p.F862F		NM_145207	NP_660208	Q8NB90	SPAT5_HUMAN	spermatogenesis associated 5	862					cell differentiation|multicellular organismal development|spermatogenesis	mitochondrion	ATP binding|nucleoside-triphosphatase activity				0						AAAGACATTTCACTCAGGCCT	0.408													24	6					0	0	0.667858	0	0
PCDH10	57575	broad.mit.edu	37	4	134072069	134072069	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr4:134072069C>T	uc003iha.2	+	1	1600	c.774C>T	c.(772-774)TCC>TCT	p.S258S	uc003igy.2_5'Flank|PCDH10_uc003igz.2_Silent_p.S258S	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	258	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		ACACTGTGTCCCTACCAGAGA	0.632													42	25					0	0	0.870114	0	0
ANAPC10	10393	broad.mit.edu	37	4	145985797	145985797	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr4:145985797G>A	uc003iju.3	-	5	409	c.254C>T	c.(253-255)TCT>TTT	p.S85F	ANAPC10_uc003ijv.3_Missense_Mutation_p.S85F|ANAPC10_uc003ijw.3_Missense_Mutation_p.S85F	NM_014885	NP_055700	Q9UM13	APC10_HUMAN	anaphase promoting complex subunit 10	85	DOC.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G2/M transition of mitotic cell cycle|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	ubiquitin-protein ligase activity				0	all_hematologic(180;0.151)					GCTTTCATCAGATTTGTAGTC	0.294													23	4					0	0	0.624587	0	0
ADAM29	11086	broad.mit.edu	37	4	175898946	175898946	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr4:175898946C>T	uc003iuc.2	+	5	2940	c.2270C>T	c.(2269-2271)TCC>TTC	p.S757F	ADAM29_uc003iud.2_Missense_Mutation_p.S757F|ADAM29_uc010irr.2_Missense_Mutation_p.S757F|ADAM29_uc011cki.1_Missense_Mutation_p.S757F	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	757	Cytoplasmic (Potential).|9 X 9 AA approximate repeats.|3.				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		GTGATGCCTTCCCAGAGTCAA	0.562													84	32					0	0	0.870114	0	0
VEGFC	7424	broad.mit.edu	37	4	177608435	177608435	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr4:177608435G>A	uc003ius.1	-	6	1481	c.1051C>T	c.(1051-1053)CAA>TAA	p.Q351*		NM_005429	NP_005420	P49767	VEGFC_HUMAN	vascular endothelial growth factor C	351	4 X 16 AA repeats of C-X(10)-C-X-C- X(1,3)-C.|4.				angiogenesis|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of mast cell chemotaxis|substrate-dependent cell migration|vascular endothelial growth factor receptor signaling pathway	membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity			lung(5)	5		Breast(14;0.000223)|Renal(120;0.00988)|Prostate(90;0.00996)|Melanoma(52;0.0101)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;1.59e-18)|Epithelial(43;3.68e-16)|OV - Ovarian serous cystadenocarcinoma(60;8.52e-09)|GBM - Glioblastoma multiforme(59;0.000546)|STAD - Stomach adenocarcinoma(60;0.00308)|Colorectal(24;0.025)|COAD - Colon adenocarcinoma(29;0.0359)|LUSC - Lung squamous cell carcinoma(193;0.0397)		TTTAGGGGTTGATTTCTGGGG	0.428													66	35					0	0	0.870114	0	0
ODZ3	55714	broad.mit.edu	37	4	183594241	183594241	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr4:183594241C>T	uc003ivd.1	+	6	1232	c.1195C>T	c.(1195-1197)CCT>TCT	p.P399S		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	399	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TCAAGAGATTCCTCCCGGGAT	0.403													6	1					0	0	0.217242	0	0
STOX2	56977	broad.mit.edu	37	4	184930405	184930405	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr4:184930405C>T	uc003ivz.1	+	3	1849	c.414C>T	c.(412-414)ATC>ATT	p.I138I	STOX2_uc003iwa.1_5'UTR	NM_020225	NP_064610	Q9P2F5	STOX2_HUMAN	storkhead box 2	138					embryo development|maternal placenta development						0		all_lung(41;1.89e-12)|Lung NSC(41;3.48e-12)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|all_hematologic(60;0.027)|Prostate(90;0.0283)		all cancers(43;2.85e-26)|Epithelial(43;2.27e-22)|OV - Ovarian serous cystadenocarcinoma(60;3.4e-10)|Colorectal(24;8.23e-06)|GBM - Glioblastoma multiforme(59;1.64e-05)|STAD - Stomach adenocarcinoma(60;3.6e-05)|COAD - Colon adenocarcinoma(29;4.37e-05)|LUSC - Lung squamous cell carcinoma(40;0.008)|READ - Rectum adenocarcinoma(43;0.227)		GCTACTTCATCGTGACCCCAC	0.493													7	9					0	0	0.278610	0	0
DNAH5	1767	broad.mit.edu	37	5	13769652	13769652	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr5:13769652C>T	uc003jfd.2	-	57	9720	c.9678G>A	c.(9676-9678)GCG>GCA	p.A3226A	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3226	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCTTTTCTTTCGCTTCCAGTT	0.433									Kartagener_syndrome				24	43					0	0	0.750413	0	0
DNAH5	1767	broad.mit.edu	37	5	13862838	13862838	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr5:13862838C>T	uc003jfd.2	-	29	4657	c.4615G>A	c.(4615-4617)GTG>ATG	p.V1539M		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1539	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTCTCTTTCACCGCACTGATA	0.428									Kartagener_syndrome				55	29					0	0	0.870114	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41005705	41005705	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr5:41005705C>T	uc003jmj.3	-	35	4282	c.3792G>A	c.(3790-3792)ATG>ATA	p.M1264I	HEATR7B2_uc003jmi.3_Missense_Mutation_p.M819I	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1264	HEAT 14.						binding			ovary(6)|central_nervous_system(2)	8						GCAGCTGTTCCATGATGTCCA	0.483													15	11					0	0	0.575678	0	0
PLCXD3	345557	broad.mit.edu	37	5	41510611	41510611	+	Silent	SNP	C	T	T	rs150477234	by1000genomes	TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr5:41510611C>T	uc003jmm.1	-	1	120	c.18G>A	c.(16-18)GGG>GGA	p.G6G		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	6					intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(2)|urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	6						GCTCGTTTTTCCCCTGAGACG	0.617													16	7					0	0	0.539581	0	0
GHR	2690	broad.mit.edu	37	5	42719517	42719517	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr5:42719517C>T	uc003jmt.2	+	10	1951	c.1908C>T	c.(1906-1908)ATC>ATT	p.I636I	GHR_uc011cpq.1_Silent_p.I449I	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	636	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	TGAACAAAATCATGCCTTAGC	0.433													45	17					0	0	0.870114	0	0
IL6ST	3572	broad.mit.edu	37	5	55260006	55260006	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr5:55260006G>A	uc003jqq.2	-	6	881	c.626C>T	c.(625-627)TCA>TTA	p.S209L	IL6ST_uc010iwb.2_Missense_Mutation_p.S209L|IL6ST_uc010iwc.2_Intron|IL6ST_uc010iwd.2_Intron|IL6ST_uc011cqk.1_5'UTR|IL6ST_uc003jqr.2_Missense_Mutation_p.S209L|IL6ST_uc010iwf.1_RNA	NM_002184	NP_002175	P40189	IL6RB_HUMAN	interleukin 6 signal transducer isoform 1	209	Extracellular (Potential).|Fibronectin type-III 1.				interleukin-6-mediated signaling pathway|leukemia inhibitory factor signaling pathway|negative regulation of interleukin-6-mediated signaling pathway|positive regulation of anti-apoptosis|positive regulation of cardiac muscle hypertrophy|positive regulation of osteoblast differentiation|positive regulation of T cell proliferation|positive regulation of tyrosine phosphorylation of Stat1 protein|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation vascular endothelial growth factor production	ciliary neurotrophic factor receptor complex|extracellular region|extracellular space|interleukin-6 receptor complex|oncostatin-M receptor complex	ciliary neurotrophic factor receptor activity|ciliary neurotrophic factor receptor binding|growth factor binding|protein homodimerization activity			large_intestine(1)|ovary(1)	2		Lung NSC(810;8.69e-05)|Prostate(74;0.00308)|Breast(144;0.0544)|Ovarian(174;0.223)				GATATGATCTGATGTAACCTT	0.358			O		hepatocellular ca								47	29					0	0	0.870114	0	0
CWC27	10283	broad.mit.edu	37	5	64079668	64079668	+	Silent	SNP	A	G	G			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr5:64079668A>G	uc003jtn.1	+	4	477	c.258A>G	c.(256-258)GAA>GAG	p.E86E	CWC27_uc003jtl.2_Silent_p.E86E|CWC27_uc003jtm.2_Silent_p.E86E|CWC27_uc010iwt.1_Silent_p.E86E	NM_005869	NP_005860	Q6UX04	CWC27_HUMAN	serologically defined colon cancer antigen 10	86	PPIase cyclophilin-type.				protein folding	catalytic step 2 spliceosome	peptidyl-prolyl cis-trans isomerase activity				0						TTCAGGATGAATTTCATTCAC	0.413													94	36					0	0	0.870114	0	0
POU5F2	134187	broad.mit.edu	37	5	93076865	93076865	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr5:93076865C>T	uc003kkl.1	-	1	445	c.405G>A	c.(403-405)CAG>CAA	p.Q135Q	FAM172A_uc010jbd.2_Intron|FAM172A_uc011cuf.1_Intron|FAM172A_uc011cug.1_Intron|FAM172A_uc011cuh.1_Intron|FAM172A_uc011cui.1_Intron|FAM172A_uc011cuj.1_Intron	NM_153216	NP_694948	Q8N7G0	PO5F2_HUMAN	POU domain class 5, transcription factor 2	135	POU-specific.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(142;3.87e-05)|all_epithelial(76;4.59e-07)|all_lung(232;0.0126)|Lung NSC(167;0.0155)|Ovarian(174;0.0218)|Prostate(281;0.173)|Colorectal(57;0.19)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0415)|all cancers(79;2.03e-19)		TCAACCTCTTCTGCCTCAACT	0.592													27	18					0	0	0.760397	0	0
ARSK	153642	broad.mit.edu	37	5	94927309	94927309	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr5:94927309A>G	uc003kld.2	+	6	1234	c.1076A>G	c.(1075-1077)GAT>GGT	p.D359G	ARSK_uc010jbg.2_Missense_Mutation_p.D200G|ARSK_uc011cum.1_RNA	NM_198150	NP_937793	Q6UWY0	ARSK_HUMAN	arylsulfatase K precursor	359						extracellular region	arylsulfatase activity|metal ion binding			pancreas(1)	1		all_cancers(142;3.38e-06)|all_epithelial(76;6.57e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.00473)		all cancers(79;6.5e-16)		TCTCTTGTGGATATTTACCCT	0.393													59	18					0	0	0.870114	0	0
PAM	5066	broad.mit.edu	37	5	102203051	102203051	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr5:102203051C>T	uc003knw.2	+	2	537	c.164C>T	c.(163-165)TCA>TTA	p.S55L	PAM_uc003kns.2_Missense_Mutation_p.S55L|PAM_uc003knt.2_Missense_Mutation_p.S55L|PAM_uc003knu.2_Missense_Mutation_p.S55L|PAM_uc003knv.2_Missense_Mutation_p.S55L|PAM_uc011cuz.1_5'UTR	NM_000919	NP_000910	P19021	AMD_HUMAN	peptidylglycine alpha-amidating monooxygenase	55	Peptidylglycine alpha-hydroxylating monooxygenase (By similarity).|Intragranular (Potential).				peptide metabolic process|protein modification process	extracellular region|integral to membrane|stored secretory granule	L-ascorbic acid binding|peptidylamidoglycolate lyase activity|peptidylglycine monooxygenase activity|protein binding				0		all_cancers(142;3.12e-07)|all_epithelial(76;3.48e-10)|Prostate(80;0.00914)|Lung NSC(167;0.0213)|Ovarian(225;0.024)|Colorectal(57;0.0251)|all_lung(232;0.0284)		Epithelial(69;1.1e-13)|COAD - Colon adenocarcinoma(37;0.0127)	Vitamin C(DB00126)	ATTGATTCATCAGATTTTGCA	0.363													26	17					0	0	0.729181	0	0
SLC27A6	28965	broad.mit.edu	37	5	128302295	128302295	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr5:128302295C>T	uc003kuy.2	+	2	861	c.465C>T	c.(463-465)GCC>GCT	p.A155A	SLC27A6_uc003kuz.2_Silent_p.A155A	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	155					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		GGCCCAGAGCCCTAGTGGTGG	0.552													12	6					0	0	0.539581	0	0
PCDHA7	56141	broad.mit.edu	37	5	140214080	140214080	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr5:140214080G>A	uc003lhq.2	+	1	112	c.112G>A	c.(112-114)GAG>AAG	p.E38K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.E38K	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	38	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTCCCCGAGGAGGCTAAACA	0.617													52	15					0	0	0.870114	0	0
PCDHB7	56129	broad.mit.edu	37	5	140554380	140554380	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr5:140554380C>T	uc003lit.2	+	1	2138	c.1964C>T	c.(1963-1965)ACC>ATC	p.T655I		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	655	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGCTCGGCCACCGCCACGCTG	0.711													33	194					0	0	0.827153	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558738	140558738	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr5:140558738G>A	uc011dai.1	+	1	1309	c.1123G>A	c.(1123-1125)GAT>AAT	p.D375N	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	375	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCAGACCTTGATTCAGGAGA	0.458													46	365					0	0	0.870114	0	0
PCDHB10	56126	broad.mit.edu	37	5	140573554	140573554	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr5:140573554G>A	uc003lix.2	+	1	1603	c.1429G>A	c.(1429-1431)GAC>AAC	p.D477N		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	477	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CAGCGCCACAGACAGAGACTC	0.657													28	84					0	0	0.779181	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140719075	140719075	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr5:140719075C>T	uc003ljk.1	+	1	722	c.537C>T	c.(535-537)TCC>TCT	p.S179S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Silent_p.S179S	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	179	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCACTTCTCCCTGGACGTGC	0.562													56	22					0	0	0.870114	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140725506	140725506	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr5:140725506G>A	uc003ljm.1	+	1	1906	c.1906G>A	c.(1906-1908)GAC>AAC	p.D636N	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Missense_Mutation_p.D396N|PCDHGA3_uc011dap.1_Missense_Mutation_p.D636N	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	636	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTGGACAGAGACGCGCTCAA	0.706													30	30					0	0	0.827153	0	0
PCDHGB7	56099	broad.mit.edu	37	5	140797886	140797886	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr5:140797886C>T	uc003lkn.1	+	1	605	c.460C>T	c.(460-462)CTT>TTT	p.L154F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkm.2_Missense_Mutation_p.L154F|PCDHGA11_uc003lko.1_5'Flank|PCDHGA11_uc003lkp.1_5'Flank|PCDHGA11_uc003lkq.1_5'Flank	NM_018927	NP_061750	Q9Y5F8	PCDGJ_HUMAN	protocadherin gamma subfamily B, 7 isoform 1	154	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGAACAATTCTTGAGTCTGC	0.418													13	5					0	0	0.479597	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147040965	147040965	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr5:147040965A>G	uc003loq.1	-	3	555	c.173T>C	c.(172-174)ATT>ACT	p.I58T	JAKMIP2_uc011dbx.1_Missense_Mutation_p.I16T|JAKMIP2_uc003lor.1_Missense_Mutation_p.I58T|uc003lop.1_3'UTR|JAKMIP2_uc010jgo.1_Missense_Mutation_p.I58T	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	58	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGCTCACGAATCCTCTTCGC	0.502													39	16					0	0	0.870114	0	0
FOXI1	2299	broad.mit.edu	37	5	169535120	169535120	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr5:169535120G>A	uc003mai.3	+	2	687	c.642G>A	c.(640-642)AGG>AGA	p.R214R	FOXI1_uc003maj.3_Intron	NM_012188	NP_036320	Q12951	FOXI1_HUMAN	forkhead box I1 isoform a	214	Fork-head.				epidermal cell fate specification|otic placode formation|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0267)|all_lung(126;0.04)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ATTTCCGCAGGAAAAGGAAGA	0.493									Pendred_syndrome				24	11					0	0	0.693898	0	0
DRD1	1812	broad.mit.edu	37	5	174869909	174869909	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr5:174869909G>A	uc003mcz.2	-	2	1139	c.194C>T	c.(193-195)TCC>TTC	p.S65F		NM_000794	NP_000785	P21728	DRD1_HUMAN	dopamine receptor D1	65	Helical; Name=2; (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|adult walking behavior|cerebral cortex GABAergic interneuron migration|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|mating behavior|positive regulation of cAMP biosynthetic process|positive regulation of cell migration|positive regulation of potassium ion transport|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of synaptic transmission, glutamatergic|prepulse inhibition|response to drug|synapse assembly|visual learning	endoplasmic reticulum membrane|membrane fraction	protein binding			ovary(2)|skin(1)	3	all_cancers(89;0.00895)|Renal(175;0.000159)|Lung NSC(126;0.00625)|all_lung(126;0.0104)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)		Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Carphenazine(DB01038)|Chlorprothixene(DB01239)|Clozapine(DB00363)|Cocaine(DB00907)|Dopamine(DB00988)|Fenoldopam(DB00800)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Methylergonovine(DB00353)|Minaprine(DB00805)|Olanzapine(DB00334)|Pegademase bovine(DB00061)|Pergolide(DB01186)|Perphenazine(DB00850)|Prochlorperazine(DB00433)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Triflupromazine(DB00508)|Zuclopenthixol(DB01624)	CACAGCCAAGGAGATGACAAA	0.572													24	6					0	0	0.693898	0	0
HK3	3101	broad.mit.edu	37	5	176308809	176308809	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr5:176308809G>A	uc003mfa.2	-	17	2369	c.2277C>T	c.(2275-2277)ATC>ATT	p.I759I	HK3_uc003mez.2_Silent_p.I315I	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	759	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TGTGGCGGACGATCTCCCCCA	0.567													27	14					0	0	0.740014	0	0
LYRM4	57128	broad.mit.edu	37	6	5216856	5216856	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:5216856G>A	uc003mwp.2	-	2	404	c.202C>T	c.(202-204)CGA>TGA	p.R68*	LYRM4_uc010jnu.2_Nonsense_Mutation_p.R68*|LYRM4_uc003mwq.2_Intron|uc003mwn.1_Intron	NM_020408	NP_065141	Q9HD34	LYRM4_HUMAN	LYR motif containing 4 isoform 1	68						mitochondrion|nucleus					0	Ovarian(93;0.11)	all_hematologic(90;0.0901)				CTTACCTGTCGACGAATTACT	0.383													18	90					0	0	0.654019	0	0
BMP6	654	broad.mit.edu	37	6	7880313	7880313	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:7880313C>A	uc003mxu.3	+	6	1549	c.1371C>A	c.(1369-1371)AAC>AAA	p.N457K		NM_001718	NP_001709	P22004	BMP6_HUMAN	bone morphogenetic protein 6 preproprotein	457					BMP signaling pathway|cartilage development|growth|immune response|positive regulation of aldosterone biosynthetic process|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	BMP receptor binding|cytokine activity|growth factor activity|protein heterodimerization activity			large_intestine(2)|ovary(1)	3	Ovarian(93;0.0721)					ATGCAACCAACCACGCGATTG	0.483													48	103					2.2129e-31	2.2365e-31	0.870114	1	0
JARID2	3720	broad.mit.edu	37	6	15496653	15496653	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:15496653C>T	uc003nbj.2	+	7	1441	c.1197C>T	c.(1195-1197)TCC>TCT	p.S399S	JARID2_uc011diu.1_Silent_p.S263S|JARID2_uc011div.1_Silent_p.S227S|JARID2_uc011diw.1_Silent_p.S361S	NM_004973	NP_004964	Q92833	JARD2_HUMAN	jumonji, AT rich interactive domain 2 protein	399					central nervous system development|chromatin modification|negative regulation of histone methylation|positive regulation of histone H3-K9 methylation|stem cell differentiation|transcription, DNA-dependent		chromatin binding			ovary(2)|lung(1)|pancreas(1)	4	Breast(50;0.0142)|Ovarian(93;0.103)	all_hematologic(90;0.00612)				CGTCCAAGTCCACTGGGCCCG	0.602													58	79					0	0	0.870114	0	0
CAP2	10486	broad.mit.edu	37	6	17463250	17463250	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:17463250C>T	uc003ncb.2	+	4	489	c.246C>T	c.(244-246)TTC>TTT	p.F82F	CAP2_uc010jpk.1_Intron|CAP2_uc011dja.1_Intron|CAP2_uc011djb.1_Silent_p.F82F|CAP2_uc011djc.1_Silent_p.F82F|CAP2_uc011djd.1_Intron	NM_006366	NP_006357	P40123	CAP2_HUMAN	adenylyl cyclase-associated protein 2	82					activation of adenylate cyclase activity|axon guidance|cytoskeleton organization|establishment or maintenance of cell polarity|signal transduction	plasma membrane	actin binding			ovary(1)	1	Breast(50;0.0333)|Ovarian(93;0.0386)	all_hematologic(90;0.0466)	all cancers(50;0.194)|Epithelial(50;0.227)			ACAGTGCTTTCCAGGCCCAGC	0.448													10	67					0	0	0.457914	0	0
LRRC16A	55604	broad.mit.edu	37	6	25610296	25610296	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:25610296C>T	uc011djw.1	+	36	4242	c.3866C>T	c.(3865-3867)CCA>CTA	p.P1289L	LRRC16A_uc010jpx.2_Missense_Mutation_p.P1244L|LRRC16A_uc010jpy.2_Missense_Mutation_p.P1283L	NM_017640	NP_060110	Q5VZK9	LR16A_HUMAN	leucine rich repeat containing 16A	1289					actin filament organization|blood coagulation|cell migration|lamellipodium assembly|ruffle organization|urate metabolic process	cytosol|lamellipodium|nucleus				ovary(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4						CCAGACTCTCCATCTAGCCCG	0.458													30	159					0	0	0.812448	0	0
HIST1H1B	3009	broad.mit.edu	37	6	27835291	27835291	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:27835291G>A	uc003njx.2	-	1	69	c.17C>T	c.(16-18)CCT>CTT	p.P6L		NM_005322	NP_005313	P16401	H15_HUMAN	histone cluster 1, H1b	6					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(2)|lung(1)	3						TGTCTCGGCAGGAGCGGTTTC	0.587													15	12					0	0	0.624587	0	0
SCAND3	114821	broad.mit.edu	37	6	28540518	28540518	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:28540518G>A	uc003nlo.2	-	4	3766	c.3148C>T	c.(3148-3150)CAT>TAT	p.H1050Y		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	1050					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						agttgcttatgatcagcttcc	0													37	61					0	0	0.870114	0	0
OR14J1	442191	broad.mit.edu	37	6	29275264	29275264	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:29275264G>A	uc011dln.1	+	1	798	c.798G>A	c.(796-798)TCG>TCA	p.S266S		NM_030946	NP_112208	Q9UGF5	O14J1_HUMAN	olfactory receptor, family 5, subfamily U member	266	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ATTCCTCATCGACTGTGGACC	0.458													62	69					0	0	0.870114	0	0
TRIM26	7726	broad.mit.edu	37	6	30164359	30164359	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:30164359G>A	uc003npr.2	-	5	908	c.699C>T	c.(697-699)GCC>GCT	p.A233A	TRIM26_uc003nps.2_Silent_p.A233A|TRIM26_uc010jry.2_5'UTR|TRIM26_uc003npt.2_Silent_p.A233A	NM_003449	NP_003440	Q12899	TRI26_HUMAN	tripartite motif-containing 26	233							DNA binding|zinc ion binding			ovary(2)|lung(1)	3						GGGCCAGCCGGGCAAGCTCCC	0.607													32	47					0	0	0.804634	0	0
TNXB	7148	broad.mit.edu	37	6	32026050	32026050	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:32026050G>A	uc003nzl.2	-	22	7812	c.7610C>T	c.(7609-7611)TCG>TTG	p.S2537L		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2597	Fibronectin type-III 18.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						AAGGCTCAGCGAGTCAGGGGA	0.687													7	46					0	0	0.335167	0	0
TNXB	7148	broad.mit.edu	37	6	32052356	32052356	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:32052356C>T	uc003nzl.2	-	8	3481	c.3279G>A	c.(3277-3279)GTG>GTA	p.V1093V		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1180	Fibronectin type-III 4.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TGTACTGGATCACGAAGGAGT	0.657													10	23					0	0	0.435327	0	0
BRPF3	27154	broad.mit.edu	37	6	36177996	36177996	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:36177996C>T	uc003olv.3	+	6	2094	c.1870C>T	c.(1870-1872)CCA>TCA	p.P624S	BRPF3_uc010jwb.2_Missense_Mutation_p.P624S|BRPF3_uc011dtj.1_RNA|BRPF3_uc010jwc.2_RNA|BRPF3_uc011dtk.1_Missense_Mutation_p.P624S	NM_015695	NP_056510	Q9ULD4	BRPF3_HUMAN	bromodomain and PHD finger containing, 3	624	Bromo.				histone H3 acetylation|platelet activation|platelet degranulation	cytosol|extracellular region|MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						TGTTTAGGTTCCAGATTACCT	0.328													8	13					0	0	0.361761	0	0
DNAH8	1769	broad.mit.edu	37	6	38813380	38813380	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:38813380G>A	uc003ooe.1	+	34	4825	c.4225G>A	c.(4225-4227)GAT>AAT	p.D1409N		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TAAGGAGAAGGATATCGAAGC	0.363													13	42					0	0	0.557998	0	0
DNAH8	1769	broad.mit.edu	37	6	38997949	38997949	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:38997949G>T	uc003ooe.1	+	91	13854	c.13254G>T	c.(13252-13254)ATG>ATT	p.M4418I		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GGAAGCTCATGGAATCCACCC	0.502											OREG0017409	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	19					4.96729e-08	5.00027e-08	0.575678	1	0
TREML2	79865	broad.mit.edu	37	6	41166097	41166097	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:41166097G>A	uc010jxm.1	-	2	305	c.126C>T	c.(124-126)TCC>TCT	p.S42S		NM_024807	NP_079083	Q5T2D2	TRML2_HUMAN	triggering receptor expressed on myeloid	42	Ig-like V-type.|Extracellular (Potential).				T cell activation	cell surface|integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					AGCCCTTATAGGAGCACTGCA	0.517													47	81					0	0	0.870114	0	0
PEX6	5190	broad.mit.edu	37	6	42946034	42946034	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:42946034G>A	uc003otf.2	-	1	948	c.855C>T	c.(853-855)CCC>CCT	p.P285P	PEX6_uc010jya.2_RNA	NM_000287	NP_000278	Q13608	PEX6_HUMAN	peroxisomal biogenesis factor 6	285					protein import into peroxisome matrix, translocation|protein stabilization	cytosol|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)	1			all cancers(41;0.00235)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.0562)			CCATTTCCAGGGGGTCACAGC	0.537													20	29					0	0	0.667858	0	0
MEP1A	4224	broad.mit.edu	37	6	46787370	46787370	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:46787370G>A	uc010jzh.1	+	7	527	c.485G>A	c.(484-486)GGA>GAA	p.G162E	MEP1A_uc011dwg.1_5'UTR|MEP1A_uc011dwh.1_Missense_Mutation_p.G190E|MEP1A_uc011dwi.1_Missense_Mutation_p.G62E	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	162	Extracellular (Potential).|Metalloprotease.			G -> V (in Ref. 2; AAL85339).	digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			CATGCTTTGGGATTTTACCAC	0.483													41	106					0	0	0.870114	0	0
TNFRSF21	27242	broad.mit.edu	37	6	47221207	47221207	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:47221207C>T	uc003oyv.2	-	4	1727	c.1294G>A	c.(1294-1296)GAT>AAT	p.D432N		NM_014452	NP_055267	O75509	TNR21_HUMAN	tumor necrosis factor receptor superfamily,	432	Cytoplasmic (Potential).|Death.				cellular lipid metabolic process	cytoplasm|integral to membrane	protein binding|receptor activity				0			Lung(136;0.189)			TGATAGATATCTTTCCACTGG	0.488													8	12					0	0	0.307466	0	0
LRRC1	55227	broad.mit.edu	37	6	53778708	53778708	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:53778708G>A	uc003pcd.1	+	11	1324	c.1047G>A	c.(1045-1047)CGG>CGA	p.R349R		NM_018214	NP_060684	Q9BTT6	LRRC1_HUMAN	leucine rich repeat containing 1	349	LRR 15.					cytoplasm|membrane				ovary(1)	1	Lung NSC(77;0.0147)			BRCA - Breast invasive adenocarcinoma(397;0.0745)		GACTAACTCGGATACCTGCAG	0.468													18	46					0	0	0.557998	0	0
C6orf142	90523	broad.mit.edu	37	6	53989510	53989510	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:53989510G>A	uc003pcg.3	+	3	572	c.459G>A	c.(457-459)GGG>GGA	p.G153G	C6orf142_uc003pcf.2_Silent_p.G153G|C6orf142_uc003pch.3_Silent_p.G91G|C6orf142_uc011dwz.1_Silent_p.G112G|C6orf142_uc011dxa.1_Silent_p.G164G	NM_138569	NP_612636	Q5VWP3	MLIP_HUMAN	hypothetical protein LOC90523	153						nuclear envelope|PML body	protein binding				0	Lung NSC(77;0.0317)					CCCCAGGGGGGATTGGCACCG	0.532													14	40					0	0	0.575678	0	0
LGSN	51557	broad.mit.edu	37	6	63990433	63990433	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:63990433C>T	uc003peh.2	-	4	1057	c.1023G>A	c.(1021-1023)GGG>GGA	p.G341G	LGSN_uc003pei.2_Missense_Mutation_p.G201E	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	341					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	ACCATTTTTTCCCAGTGATCG	0.488													13	32					0	0	0.557998	0	0
RIMS1	22999	broad.mit.edu	37	6	72596752	72596752	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:72596752G>A	uc003pga.2	+	1	103	c.26G>A	c.(25-27)GGT>GAT	p.G9D		NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	9					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				GGGCCCCGCGGTCCTCGCCCA	0.677													10	12					0	0	0.411799	0	0
C6orf221	154288	broad.mit.edu	37	6	74072880	74072880	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:74072880C>T	uc003pgt.3	+	2	285	c.232C>T	c.(232-234)CGA>TGA	p.R78*		NM_001017361	NP_001017361	Q587J8	ECAT1_HUMAN	hypothetical protein LOC154288	78	KH; atypical.									skin(2)	2						TCACGTGAATCGATTGGACCC	0.572													40	52					0	0	0.870114	0	0
HTR1B	3351	broad.mit.edu	37	6	78172692	78172692	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:78172692G>A	uc003pil.1	-	1	429	c.429C>T	c.(427-429)ATC>ATT	p.I143I		NM_000863	NP_000854	P28222	5HT1B_HUMAN	5-hydroxytryptamine (serotonin) receptor 1B	143	Helical; Name=3; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cAMP biosynthetic process|synaptic transmission	integral to plasma membrane	protein binding|serotonin receptor activity				0		all_cancers(76;0.0867)|Acute lymphoblastic leukemia(125;0.00119)|all_hematologic(105;0.0332)		BRCA - Breast invasive adenocarcinoma(397;0.205)	Almotriptan(DB00918)|Dexfenfluramine(DB01191)|Dihydroergotamine(DB00320)|Eletriptan(DB00216)|Ergotamine(DB00696)|Frovatriptan(DB00998)|Naratriptan(DB00952)|Pindolol(DB00960)|Propranolol(DB00571)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Venlafaxine(DB00285)|Zolmitriptan(DB00315)	GGTCCAGGGCGATGACACAGA	0.617													11	23					0	0	0.411799	0	0
EPHA7	2045	broad.mit.edu	37	6	93956529	93956529	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:93956529G>A	uc003poe.2	-	15	2948	c.2707C>T	c.(2707-2709)CCC>TCC	p.P903S	EPHA7_uc003pof.2_Missense_Mutation_p.P898S|EPHA7_uc011eac.1_Missense_Mutation_p.P899S	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	903	Cytoplasmic (Potential).		P -> S (in a metastatic melanoma sample; somatic mutation).			integral to plasma membrane	ATP binding|ephrin receptor activity	p.P903S(1)		lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		GTTCCCAGGGGAGTTTTCAGA	0.403													15	37					0	0	0.575678	0	0
EPHA7	2045	broad.mit.edu	37	6	94120594	94120594	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:94120594C>T	uc003poe.2	-	3	698	c.457G>A	c.(457-459)GAA>AAA	p.E153K	EPHA7_uc003pof.2_Missense_Mutation_p.E153K|EPHA7_uc011eac.1_Missense_Mutation_p.E153K|EPHA7_uc003pog.3_Missense_Mutation_p.E153K	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	153	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		GTAAAACTTTCATCTGCAGCA	0.373													17	31					0	0	0.575678	0	0
HACE1	57531	broad.mit.edu	37	6	105280966	105280966	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:105280966G>A	uc003pqu.1	-	6	762	c.485C>T	c.(484-486)GCC>GTC	p.A162V	HACE1_uc010kcy.1_5'UTR|HACE1_uc010kcz.1_Missense_Mutation_p.A162V	NM_020771	NP_065822	Q8IYU2	HACE1_HUMAN	HECT domain and ankyrin repeat containing, E3	162					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	endoplasmic reticulum	ubiquitin-protein ligase activity	p.A162V(1)		ovary(5)|lung(2)	7		all_cancers(87;6.89e-05)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0216)|Colorectal(196;0.202)		BRCA - Breast invasive adenocarcinoma(108;0.122)|Epithelial(106;0.204)		CTGCCCCATGGCATCCTCAAC	0.468													32	48					0	0	0.796494	0	0
GSTM2P1	442245	broad.mit.edu	37	6	111368173	111368173	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:111368173G>A	uc003puq.2	-	1	585	c.450C>T	c.(448-450)TTC>TTT	p.F150F		NR_002932				Homo sapiens chromosome 1 truncated glutathione S-transferase M1 mRNA, complete cds.												0						ATCGGGAGATGAAGTCCTTCA	0.493													12	30					0	0	0.479597	0	0
TUBE1	51175	broad.mit.edu	37	6	112393216	112393216	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:112393216G>A	uc003pvq.2	-	11	1272	c.1158C>T	c.(1156-1158)TCC>TCT	p.S386S	TUBE1_uc003pvr.2_Silent_p.S311S	NM_016262	NP_057346	Q9UJT0	TBE_HUMAN	tubulin, epsilon 1	386					centrosome cycle|microtubule-based movement|protein polymerization	microtubule|pericentriolar material	GTP binding|GTPase activity|structural constituent of cytoskeleton			ovary(1)	1		all_cancers(87;0.0101)|all_hematologic(75;0.000258)|Colorectal(196;0.0466)|all_epithelial(87;0.1)		all cancers(137;0.0217)|OV - Ovarian serous cystadenocarcinoma(136;0.0613)|Epithelial(106;0.0636)|GBM - Glioblastoma multiforme(226;0.0972)|BRCA - Breast invasive adenocarcinoma(108;0.246)		CAGGAGGTACGGAACACAGGC	0.413													27	46					0	0	0.827153	0	0
GPRC6A	222545	broad.mit.edu	37	6	117121792	117121792	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:117121792G>A	uc003pxj.1	-	4	1525	c.1503C>T	c.(1501-1503)TTC>TTT	p.F501F	GPRC6A_uc003pxk.1_Silent_p.F326F|GPRC6A_uc003pxl.1_Intron	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	501	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		CTGGGATGATGAAGACATCAT	0.378													26	48					0	0	0.740014	0	0
RFX6	222546	broad.mit.edu	37	6	117243285	117243285	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:117243285G>A	uc003pxm.2	+	13	1471	c.1408G>A	c.(1408-1410)GAT>AAT	p.D470N		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	470					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						TGAATGGTTGGATACTGTGGT	0.343													17	32					0	0	0.624587	0	0
PTPRK	5796	broad.mit.edu	37	6	128304508	128304508	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:128304508C>T	uc003qbk.2	-	23	3630	c.3263G>A	c.(3262-3264)CGA>CAA	p.R1088Q	PTPRK_uc003qbj.2_Missense_Mutation_p.R1089Q|PTPRK_uc010kfc.2_Missense_Mutation_p.R1095Q|PTPRK_uc011ebu.1_Missense_Mutation_p.R1111Q	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	1088	Substrate binding (By similarity).|Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		GCAGCCAGTTCGTCCAGCACC	0.383													13	36					0	0	0.479597	0	0
PTPRK	5796	broad.mit.edu	37	6	128505788	128505788	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:128505788G>A	uc003qbk.2	-	7	1318	c.951C>T	c.(949-951)ATC>ATT	p.I317I	PTPRK_uc003qbj.2_Silent_p.I317I|PTPRK_uc010kfc.2_Silent_p.I317I|PTPRK_uc011ebu.1_Silent_p.I317I|PTPRK_uc003qbl.1_Silent_p.I187I|PTPRK_uc011ebv.1_Silent_p.I317I	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	317	Fibronectin type-III 1.|Extracellular (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		CATCGCCAATGATCGAGTTGG	0.463													36	70					0	0	0.769981	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762616	130762616	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:130762616C>T	uc003qca.2	+	3	1920	c.1049C>T	c.(1048-1050)TCC>TTC	p.S350F	TMEM200A_uc010kfh.2_Missense_Mutation_p.S350F|TMEM200A_uc010kfi.2_Missense_Mutation_p.S350F|TMEM200A_uc003qcb.2_Missense_Mutation_p.S350F	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	350	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		AGGAATAATTCCATTGGGGAG	0.522													26	36					0	0	0.693898	0	0
TNFAIP3	7128	broad.mit.edu	37	6	138202424	138202424	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:138202424G>A	uc003qhr.2	+	9	2407	c.2341G>A	c.(2341-2343)GAA>AAA	p.E781K	TNFAIP3_uc003qhs.2_Missense_Mutation_p.E781K	NM_006290	NP_006281	P21580	TNAP3_HUMAN	tumor necrosis factor, alpha-induced protein 3	781	A20-type 7.				anti-apoptosis|apoptosis|B-1 B cell homeostasis|negative regulation of B cell activation|negative regulation of bone resorption|negative regulation of CD40 signaling pathway|negative regulation of endothelial cell apoptosis|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of inflammatory response|negative regulation of interleukin-2 production|negative regulation of interleukin-6 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of osteoclast proliferation|negative regulation of protein ubiquitination|negative regulation of smooth muscle cell proliferation|negative regulation of toll-like receptor 2 signaling pathway|negative regulation of toll-like receptor 3 signaling pathway|negative regulation of tumor necrosis factor production|negative regulation of type I interferon production|positive regulation of protein catabolic process|protein K48-linked ubiquitination|protein K63-linked deubiquitination|protein oligomerization|regulation of defense response to virus by host|regulation of germinal center formation|regulation of vascular wound healing|tolerance induction to lipopolysaccharide	centrosome|cytosol|nucleus	caspase inhibitor activity|DNA binding|protease binding|protein self-association|ubiquitin binding|ubiquitin thiolesterase activity|ubiquitin-protein ligase activity|ubiquitin-specific protease activity|zinc ion binding	p.0?(22)|p.E781D(1)		haematopoietic_and_lymphoid_tissue(133)|lung(3)|ovary(1)	137	Breast(32;0.135)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000849)|OV - Ovarian serous cystadenocarcinoma(155;0.00468)		CTACTGCAACGAATGCTTTCA	0.592			D|N|F		marginal zone B-cell lymphomas|Hodgkin's lymphoma|primary mediastinal B cell lymphoma								39	84					0	0	0.870114	0	0
CCDC28A	25901	broad.mit.edu	37	6	139094904	139094904	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:139094904C>T	uc003qie.2	+	1	248	c.93C>T	c.(91-93)TTC>TTT	p.F31F	uc003qid.1_5'Flank	NM_015439	NP_056254	Q8IWP9	CC28A_HUMAN	coiled-coil domain containing 28A	31											0				OV - Ovarian serous cystadenocarcinoma(155;0.000201)|GBM - Glioblastoma multiforme(68;0.000306)		TACGTCACTTCCGTAAACAAA	0.642													41	86					0	0	0.870114	0	0
ECT2L	345930	broad.mit.edu	37	6	139167687	139167687	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:139167687C>T	uc003qif.1	+	6	879	c.776C>T	c.(775-777)TCT>TTT	p.S259F	ECT2L_uc011edq.1_Missense_Mutation_p.S190F	NM_001077706	NP_001071174	Q008S8	ECT2L_HUMAN	epithelial cell transforming sequence 2	259					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity				0						AGCAATATTTCTGGAAGCCAT	0.368													10	26					0	0	0.335167	0	0
SHPRH	257218	broad.mit.edu	37	6	146262942	146262942	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:146262942G>A	uc003qlf.2	-	10	2706	c.2307C>T	c.(2305-2307)ATC>ATT	p.I769I	SHPRH_uc003qld.2_Silent_p.I769I|SHPRH_uc003qle.2_Silent_p.I769I|SHPRH_uc003qlg.1_Silent_p.I325I|SHPRH_uc003qlj.1_Silent_p.I658I	NM_001042683	NP_001036148	Q149N8	SHPRH_HUMAN	SNF2 histone linker PHD RING helicase isoform a	769	Helicase ATP-binding; second part.				DNA repair|nucleosome assembly	nucleosome|nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)|kidney(1)|central_nervous_system(1)	3		Ovarian(120;0.0365)		OV - Ovarian serous cystadenocarcinoma(155;1.47e-07)|GBM - Glioblastoma multiforme(68;0.0124)		CATAGGTAATGATAACTATAT	0.393													10	21					0	0	0.387290	0	0
TFB1M	51106	broad.mit.edu	37	6	155578999	155578999	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:155578999C>T	uc003qqj.3	-	7	1076	c.1012G>A	c.(1012-1014)GAG>AAG	p.E338K	TFB1M_uc003qqk.2_RNA|uc003qqi.1_5'Flank	NM_016020	NP_057104	Q8WVM0	TFB1M_HUMAN	transcription factor B1, mitochondrial	338					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial nucleoid	DNA binding|protein binding|rRNA (adenine-N6,N6-)-dimethyltransferase activity			skin(1)	1		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;1.48e-12)|BRCA - Breast invasive adenocarcinoma(81;0.0131)		GCGTCATCCTCTTCTTTTTCT	0.418													5	8					0	0	0.184627	0	0
FNDC1	84624	broad.mit.edu	37	6	159687132	159687132	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:159687132G>A	uc010kjv.2	+	21	5501	c.5301G>A	c.(5299-5301)TGG>TGA	p.W1767*		NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	1767						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		AGCCTATCTGGATCCCATTCG	0.493													9	15					0	0	0.335167	0	0
IGF2R	3482	broad.mit.edu	37	6	160485503	160485503	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:160485503C>T	uc003qta.2	+	28	4105	c.3957C>T	c.(3955-3957)TGC>TGT	p.C1319C		NM_000876	NP_000867	P11717	MPRI_HUMAN	insulin-like growth factor 2 receptor precursor	1319	9.|Lumenal (Potential).				receptor-mediated endocytosis	cell surface|endocytic vesicle|endosome|integral to plasma membrane|lysosomal membrane|trans-Golgi network transport vesicle	glycoprotein binding|insulin-like growth factor receptor activity|phosphoprotein binding|transporter activity			ovary(3)	3		Breast(66;0.000777)|Ovarian(120;0.0305)		OV - Ovarian serous cystadenocarcinoma(65;2.45e-17)|BRCA - Breast invasive adenocarcinoma(81;1.09e-05)		GGGACACTTGCCATAAGGTTT	0.512													40	55					0	0	0.864702	0	0
PARK2	5071	broad.mit.edu	37	6	161781175	161781175	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:161781175G>A	uc003qtx.3	-	11	1364	c.1230C>T	c.(1228-1230)ACC>ACT	p.T410T	PARK2_uc003qtv.3_Intron|PARK2_uc010kkd.2_Silent_p.T219T|PARK2_uc003qtw.3_Intron|PARK2_uc003qty.3_Silent_p.T382T|PARK2_uc003qtz.3_Silent_p.T261T|PARK2_uc011egf.1_Silent_p.T84T	NM_004562	NP_004553	O60260	PRKN2_HUMAN	parkin isoform 1	410					aggresome assembly|central nervous system development|mitochondrion degradation|negative regulation of actin filament bundle assembly|negative regulation of cell death|negative regulation of protein phosphorylation|negative regulation of release of cytochrome c from mitochondria|neuron death|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autoubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein monoubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of autophagy|regulation of reactive oxygen species metabolic process	aggresome|cytosol|endoplasmic reticulum|Golgi apparatus|mitochondrion|nucleus|perinuclear region of cytoplasm	chaperone binding|PDZ domain binding|protein kinase binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			upper_aerodigestive_tract(1)	1		all_cancers(1;8.13e-65)|all_epithelial(1;5.77e-64)|Colorectal(1;9.65e-15)|all_lung(1;1.66e-13)|Lung NSC(1;7.54e-11)|Melanoma(1;1.75e-09)|Breast(66;7.81e-05)|Ovarian(120;0.000981)|Prostate(117;0.0288)|Esophageal squamous(34;0.102)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0663)|all cancers(1;1.9e-63)|Epithelial(1;1.5e-59)|Colorectal(1;2.16e-23)|OV - Ovarian serous cystadenocarcinoma(65;3.53e-20)|COAD - Colon adenocarcinoma(1;2.11e-15)|STAD - Stomach adenocarcinoma(1;4.64e-07)|BRCA - Breast invasive adenocarcinoma(81;1.49e-06)|READ - Rectum adenocarcinoma(1;2.95e-06)|GBM - Glioblastoma multiforme(2;7.23e-06)|Lung(1;0.00163)|KIRC - Kidney renal clear cell carcinoma(4;0.00371)|LUSC - Lung squamous cell carcinoma(1;0.00442)|Kidney(4;0.0046)		TTTTCTTGATGGTTTCTTTGG	0.517													28	46					0	0	0.729181	0	0
SMOC2	64094	broad.mit.edu	37	6	168927078	168927078	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr6:168927078G>A	uc003qws.1	+	3	329	c.309G>A	c.(307-309)AAG>AAA	p.K103K	SMOC2_uc003qwr.1_Silent_p.K103K	NM_022138	NP_071421	Q9H3U7	SMOC2_HUMAN	SPARC related modular calcium binding 2	103	Thyroglobulin type-1 1.				signal transduction	basement membrane	calcium ion binding			ovary(1)	1		Breast(66;0.000141)|Esophageal squamous(34;0.222)|Ovarian(120;0.231)		OV - Ovarian serous cystadenocarcinoma(33;1.31e-19)|BRCA - Breast invasive adenocarcinoma(81;3.06e-06)|GBM - Glioblastoma multiforme(31;0.00109)		AAGCCCGGAAGGAGTTTCAGC	0.542													20	36					0	0	0.693898	0	0
ITGB8	3696	broad.mit.edu	37	7	20406796	20406796	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:20406796C>T	uc003suu.2	+	3	1080	c.375C>T	c.(373-375)ATC>ATT	p.I125I	ITGB8_uc011jyh.1_5'UTR|ITGB8_uc003sut.2_Silent_p.I125I	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	125	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						AAGTGTCTATCCAGCTGCGTC	0.343													46	24					0	0	0.870114	0	0
DNAH11	8701	broad.mit.edu	37	7	21646282	21646282	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:21646282C>T	uc003svc.2	+	20	3814	c.3783C>T	c.(3781-3783)TTC>TTT	p.F1261F		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1261	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AGGCAGAGTTCAGAGAGAGAT	0.338									Kartagener_syndrome				12	5					0	0	0.411799	0	0
FAM183B	340286	broad.mit.edu	37	7	38725602	38725602	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:38725602C>T	uc011kbd.1	-	2	991	c.695G>A	c.(694-696)GGC>GAC	p.G232D		NR_028347				Homo sapiens cDNA FLJ42138 fis, clone TESTI2036684.												0						GGGTGTCCCGCCATAGCCTTG	0.602													19	10					0	0	0.639603	0	0
HECW1	23072	broad.mit.edu	37	7	43484956	43484956	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:43484956G>A	uc003tid.1	+	11	2790	c.2185G>A	c.(2185-2187)GAG>AAG	p.E729K	HECW1_uc011kbi.1_Missense_Mutation_p.E729K	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	729					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						CAAGATCTCCGAGAGCACGGT	0.637													58	76					0	0	0.870114	0	0
SEPT7P2	641977	broad.mit.edu	37	7	45791226	45791226	+	RNA	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:45791226C>T	uc003tnh.2	-	5		c.699G>A			SEPT7P2_uc003tnf.3_RNA	NR_024271				Homo sapiens mRNA; cDNA DKFZp313J1114 (from clone DKFZp313J1114).												0						TTTGTAAACTCAATATCCAAT	0.343													3	5					0	0	0.150653	0	0
PKD1L1	168507	broad.mit.edu	37	7	47876654	47876654	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:47876654G>A	uc003tny.1	-	37	5808	c.5808C>T	c.(5806-5808)TTC>TTT	p.F1936F		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1936	Cytoplasmic (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GCCAGACATGGAAATCCTCCA	0.552													18	39					0	0	0.592651	0	0
ABCA13	154664	broad.mit.edu	37	7	48559846	48559846	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:48559846C>T	uc003toq.2	+	53	14032	c.14007C>T	c.(14005-14007)CTC>CTT	p.L4669L	ABCA13_uc010kys.1_Silent_p.L1744L|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Silent_p.L399L	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4669	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CAGTACTTCTCCTCTTGAGGG	0.522													19	23					0	0	0.575678	0	0
PHKG1	5260	broad.mit.edu	37	7	56149604	56149604	+	Silent	SNP	C	T	T	rs145703798	byFrequency	TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:56149604C>T	uc003trz.1	-	8	969	c.774G>A	c.(772-774)TCG>TCA	p.S258S	PSPH_uc003trj.2_Intron|PHKG1_uc003try.1_Silent_p.S152S|PHKG1_uc011kdb.1_Silent_p.S290S|PHKG1_uc011kdc.1_Silent_p.S249S|PHKG1_uc011kdd.1_Silent_p.S204S	NM_006213	NP_006204	Q16816	PHKG1_HUMAN	phosphorylase kinase gamma subunit 1	258	Protein kinase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	ATP binding|calmodulin binding|phosphorylase kinase activity			large_intestine(1)	1	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			TCACGGTGTCCGAGTAATCAT	0.652													8	14					0	0	0.307466	0	0
ZNF479	90827	broad.mit.edu	37	7	57187809	57187809	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:57187809T>G	uc010kzo.2	-	5	1584	c.1313A>C	c.(1312-1314)AAA>ACA	p.K438T		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	438	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TTCTTCACATTTGTAGGGTCT	0.453													5	75					0	0	0.248553	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72658179	72658179	+	Missense_Mutation	SNP	T	C	C	rs147293416	by1000genomes	TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:72658179T>C	uc003txs.1	-	13	1733	c.805A>G	c.(805-807)AAA>GAA	p.K269E	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						cagagtgatttcggatgaatt	0													3	70					0	0	0.115264	0	0
ELN	2006	broad.mit.edu	37	7	73481102	73481102	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:73481102C>T	uc003tzw.2	+	32	2236	c.2145C>T	c.(2143-2145)TTC>TTT	p.F715F	RFC2_uc011kfa.1_Intron|ELN_uc003tzn.2_Silent_p.F709F|ELN_uc003tzz.2_Silent_p.F628F|ELN_uc003tzo.2_Silent_p.F643F|ELN_uc003tzp.2_Silent_p.F602F|ELN_uc003tzq.2_Silent_p.F555F|ELN_uc003tzr.2_RNA|ELN_uc003tzs.2_Silent_p.F690F|ELN_uc003tzt.2_Silent_p.F696F|ELN_uc003tzu.2_Silent_p.F677F|ELN_uc003tzv.2_Silent_p.F662F|ELN_uc003tzx.2_Silent_p.F699F|ELN_uc011kff.1_Silent_p.F691F|ELN_uc003tzy.2_Silent_p.F685F	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	771					blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	CTCCCATTTTCCCAGGTATGC	0.612			T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						12	40					0	0	0.435327	0	0
KIAA1324L	222223	broad.mit.edu	37	7	86526897	86526897	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:86526897C>T	uc011kha.1	-	19	2795	c.2610G>A	c.(2608-2610)GAG>GAA	p.E870E	KIAA1324L_uc003uif.1_Silent_p.E630E|KIAA1324L_uc011kgz.1_Silent_p.E756E|KIAA1324L_uc003uie.2_Silent_p.E703E	NM_001142749	NP_001136221	A8MWY0	K132L_HUMAN	hypothetical protein LOC222223 isoform 1	870	Extracellular (Potential).					integral to membrane				ovary(6)|skin(1)	7	Esophageal squamous(14;0.0058)					CTTCAGCACTCTCCCACAGGA	0.463													20	27					0	0	0.608945	0	0
SAMD9	54809	broad.mit.edu	37	7	92731309	92731309	+	Missense_Mutation	SNP	C	T	T	rs138600971	byFrequency	TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:92731309C>T	uc003umf.2	-	3	4358	c.4102G>A	c.(4102-4104)GAA>AAA	p.E1368K	SAMD9_uc003umg.2_Missense_Mutation_p.E1368K	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1368						cytoplasm		p.E1368K(1)		ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			AAAGTATATTCGTTCACTATA	0.348													36	45					0	0	0.827153	0	0
PON1	5444	broad.mit.edu	37	7	94944801	94944801	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:94944801C>T	uc003uns.2	-	4	300	c.203G>A	c.(202-204)GGA>GAA	p.G68E	PON1_uc011kih.1_Missense_Mutation_p.G68E	NM_000446	NP_000437	P27169	PON1_HUMAN	paraoxonase 1 precursor	68					aromatic compound catabolic process|carboxylic acid catabolic process|organophosphate catabolic process|phosphatidylcholine metabolic process|positive regulation of binding|positive regulation of cholesterol efflux|positive regulation of transporter activity|response to external stimulus	spherical high-density lipoprotein particle	aryldialkylphosphatase activity|arylesterase activity|calcium ion binding|phospholipid binding|protein homodimerization activity			pancreas(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0031)		Atorvastatin(DB01076)|Cefazolin(DB01327)	ATACTTTAATCCCTTATAAAC	0.428													21	34					0	0	0.624587	0	0
TECPR1	25851	broad.mit.edu	37	7	97874278	97874278	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:97874278C>T	uc003upg.2	-	4	532	c.327G>A	c.(325-327)GTG>GTA	p.V109V	TECPR1_uc003uph.1_Silent_p.V30V	NM_015395	NP_056210	Q7Z6L1	TCPR1_HUMAN	tectonin beta-propeller repeat containing 1	109						integral to membrane	protein binding			pancreas(1)	1						AGGGCAGTGCCACCCTGTCCA	0.622													20	29					0	0	0.654019	0	0
TRRAP	8295	broad.mit.edu	37	7	98573802	98573802	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:98573802C>T	uc003upp.2	+	53	8058	c.7849C>T	c.(7849-7851)CTG>TTG	p.L2617L	TRRAP_uc011kis.1_Silent_p.L2599L|TRRAP_uc003upr.2_Silent_p.L2316L	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	2617					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			TTTCGTTCAGCTGTGCCACAT	0.562													25	41					0	0	0.654019	0	0
CYP3A4	1576	broad.mit.edu	37	7	99367835	99367835	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:99367835C>T	uc003urv.1	-	5	446	c.342G>A	c.(340-342)ATG>ATA	p.M114I	CYP3A4_uc003urw.1_Missense_Mutation_p.M114I|CYP3A4_uc011kiz.1_Intron|CYP3A4_uc011kja.1_Missense_Mutation_p.M65I|CYP3A4_uc011kjb.1_Intron	NM_017460	NP_059488	P08684	CP3A4_HUMAN	cytochrome P450, family 3, subfamily A,	114					alkaloid catabolic process|androgen metabolic process|exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid catabolic process|xenobiotic metabolic process	cell surface|endoplasmic reticulum membrane|integral to membrane|microsome	albendazole monooxygenase activity|caffeine oxidase activity|electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding|quinine 3-monooxygenase activity|steroid binding|taurochenodeoxycholate 6alpha-hydroxylase activity|testosterone 6-beta-hydroxylase activity|vitamin D 24-hydroxylase activity|vitamin D3 25-hydroxylase activity			central_nervous_system(3)|ovary(1)	4	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)				Albendazole(DB00518)|Alclometasone(DB00240)|Alfentanil(DB00802)|Alfuzosin(DB00346)|Aliskiren(DB01258)|Almotriptan(DB00918)|Alosetron(DB00969)|Alprazolam(DB00404)|Amlodipine(DB00381)|Amprenavir(DB00701)|Aprepitant(DB00673)|Aripiprazole(DB01238)|Astemizole(DB00637)|Atazanavir(DB01072)|Atorvastatin(DB01076)|Benazepril(DB00542)|Bepridil(DB01244)|Betamethasone(DB00443)|Bexarotene(DB00307)|Bortezomib(DB00188)|Bosentan(DB00559)|Bromocriptine(DB01200)|Budesonide(DB01222)|Bupivacaine(DB00297)|Buprenorphine(DB00921)|Buspirone(DB00490)|Busulfan(DB01008)|Carbamazepine(DB00564)|Cevimeline(DB00185)|Chlorpheniramine(DB01114)|Ciclesonide(DB01410)|Cilostazol(DB01166)|Cinacalcet(DB01012)|Cisapride(DB00604)|Clarithromycin(DB01211)|Clindamycin(DB01190)|Clofibrate(DB00636)|Clonazepam(DB01068)|Clopidogrel(DB00758)|Cocaine(DB00907)|Conivaptan(DB00872)|Conjugated Estrogens(DB00286)|Cyproterone(DB04839)|Darifenacin(DB00496)|Darunavir(DB01264)|Dasatinib(DB01254)|Delavirdine(DB00705)|Desogestrel(DB00304)|Dexamethasone(DB01234)|Diazepam(DB00829)|Dihydroergotamine(DB00320)|Diltiazem(DB00343)|Diphenhydramine(DB01075)|Disopyramide(DB00280)|Dofetilide(DB00204)|Dolasetron(DB00757)|Domperidone(DB01184)|Donepezil(DB00843)|Doxorubicin(DB00997)|Drospirenone(DB01395)|Dutasteride(DB01126)|Efavirenz(DB00625)|Eletriptan(DB00216)|Enalapril(DB00584)|Epirubicin(DB00445)|Eplerenone(DB00700)|Ergotamine(DB00696)|Erlotinib(DB00530)|Erythromycin(DB00199)|Escitalopram(DB01175)|Esomeprazole(DB00736)|Estazolam(DB01215)|Eszopiclone(DB00402)|Ethinyl Estradiol(DB00977)|Ethosuximide(DB00593)|Etonogestrel(DB00294)|Etoposide(DB00773)|Etoricoxib(DB01628)|Exemestane(DB00990)|Felodipine(DB01023)|Fentanyl(DB00813)|Fexofenadine(DB00950)|Finasteride(DB01216)|Fluconazole(DB00196)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Fosamprenavir(DB01319)|Fulvestrant(DB00947)|Galantamine(DB00674)|Gefitinib(DB00317)|Gemfibrozil(DB01241)|Granisetron(DB00889)|Grepafloxacin(DB00365)|Halofantrine(DB01218)|Hydrocodone(DB00956)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Hydromorphone(DB00327)|Imatinib(DB00619)|Indinavir(DB00224)|Ipratropium(DB00332)|Irinotecan(DB00762)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Isradipine(DB00270)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lercanidipine(DB00528)|Letrozole(DB01006)|Levobupivacaine(DB01002)|Levomethadyl Acetate(DB01227)|Levothyroxine(DB00451)|Lomustine(DB01206)|Loperamide(DB00836)|Lopinavir(DB01601)|Loratadine(DB00455)|Losartan(DB00678)|Lovastatin(DB00227)|Maraviroc(DB04835)|Marinol(DB00470)|Mebendazole(DB00643)|Medroxyprogesterone(DB00603)|Methadone(DB00333)|Methylprednisolone(DB00959)|Metyrapone(DB01011)|Mibefradil(DB01388)|Midazolam(DB00683)|Mifepristone(DB00834)|Mirtazapine(DB00370)|Modafinil(DB00745)|Mometasone(DB00764)|Montelukast(DB00471)|Nateglinide(DB00731)|Nefazodone(DB01149)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicardipine(DB00622)|Nifedipine(DB01115)|Nimodipine(DB00393)|Nisoldipine(DB00401)|Nitrendipine(DB01054)|Norethindrone(DB00717)|Norgestrel(DB00506)|Nystatin(DB00646)|Ondansetron(DB00904)|Oxybutynin(DB01062)|Paclitaxel(DB01229)|Paliperidone(DB01267)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Paricalcitol(DB00910)|Phenmetrazine(DB00830)|Pimecrolimus(DB00337)|Pimozide(DB01100)|Pioglitazone(DB01132)|Posaconazole(DB01263)|Pranlukast(DB01411)|Prednisolone(DB00860)|Prednisone(DB00635)|Prochlorperazine(DB00433)|Quetiapine(DB01224)|Quinapril(DB00881)|Quinine(DB00468)|Rabeprazole(DB01129)|Ranolazine(DB00243)|Reboxetine(DB00234)|Retapamulin(DB01256)|Rifabutin(DB00615)|Rifampin(DB01045)|Rimonabant(DB06155)|Ritonavir(DB00503)|Rofecoxib(DB00533)|Roxithromycin(DB00778)|Salmeterol(DB00938)|Saquinavir(DB01232)|Sertindole(DB06144)|Sibutramine(DB01105)|Simvastatin(DB00641)|Sirolimus(DB00877)|Sitagliptin(DB01261)|Solifenacin(DB01591)|Sorafenib(DB00398)|Sunitinib(DB01268)|Tacrolimus(DB00864)|Tadalafil(DB00820)|Tamoxifen(DB00675)|Telithromycin(DB00976)|Terconazole(DB00251)|Terfenadine(DB00342)|Testosterone(DB00624)|Tiagabine(DB00906)|Ticlopidine(DB00208)|Tinidazole(DB00911)|Tiotropium(DB01409)|Tipranavir(DB00932)|Toremifene(DB00539)|Triazolam(DB00897)|Trimetrexate(DB01157)|Troglitazone(DB00197)|Valdecoxib(DB00580)|Vardenafil(DB00862)|Vinblastine(DB00570)|Vincristine(DB00541)|Vindesine(DB00309)|Vinorelbine(DB00361)|Voriconazole(DB00582)|Zaleplon(DB00962)|Zileuton(DB00744)|Ziprasidone(DB00246)|Zolpidem(DB00425)|Zonisamide(DB00909)	TGGCACTTTTCATAAATCCCA	0.408													24	38					0	0	0.729181	0	0
MUC17	140453	broad.mit.edu	37	7	100676844	100676844	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:100676844G>A	uc003uxp.1	+	3	2200	c.2147G>A	c.(2146-2148)AGC>AAC	p.S716N	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	716	Extracellular (Potential).|Ser-rich.|10.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GTTGACACCAGCACACCTGTG	0.493													7	566					0	0	0.335167	0	0
FBXL13	222235	broad.mit.edu	37	7	102524023	102524023	+	Missense_Mutation	SNP	C	T	T	rs137980271		TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:102524023C>T	uc003vaq.2	-	13	1644	c.1217G>A	c.(1216-1218)CGA>CAA	p.R406Q	FBXL13_uc010liq.1_Intron|FBXL13_uc010lir.1_Missense_Mutation_p.R406Q|FBXL13_uc003var.2_RNA|FBXL13_uc003vas.2_Missense_Mutation_p.R406Q	NM_145032	NP_659469	Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13 isoform	406	LRR 7.										0						ACCTTCAAATCGGATCTTTCT	0.353													24	25					0	0	0.717897	0	0
SLC26A3	1811	broad.mit.edu	37	7	107408083	107408083	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:107408083C>T	uc003ver.2	-	20	2423	c.2212G>A	c.(2212-2214)GAT>AAT	p.D738N	SLC26A3_uc003ves.2_Missense_Mutation_p.D625N	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	738					excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						ATTTTTCCATCTTTTTCCTGA	0.333													15	14					0	0	0.479597	0	0
LAMB1	3912	broad.mit.edu	37	7	107601669	107601669	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:107601669G>A	uc003vew.2	-	17	2426	c.2091C>T	c.(2089-2091)CCC>CCT	p.P697P	LAMB1_uc003vev.2_Silent_p.P721P|LAMB1_uc003vex.2_Silent_p.P697P	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	697	Laminin IV type B.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCAGCGTGTAGGGGCTCTCCA	0.557													45	59					0	0	0.870114	0	0
OPN1SW	611	broad.mit.edu	37	7	128413867	128413867	+	Missense_Mutation	SNP	C	T	T	rs138093200		TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:128413867C>T	uc003vnt.3	-	4	763	c.763G>A	c.(763-765)GTA>ATA	p.V255I		NM_001708	NP_001699	P03999	OPSB_HUMAN	opsin 1 (cone pigments), short-wave-sensitive	255	Helical; Name=6; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity				0						AAGGATCCTACCATCACAACC	0.577													19	29					0	0	0.575678	0	0
FLNC	2318	broad.mit.edu	37	7	128480673	128480673	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:128480673G>A	uc003vnz.3	+	10	1830	c.1621G>A	c.(1621-1623)GTG>ATG	p.V541M	FLNC_uc003voa.3_Missense_Mutation_p.V541M	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	541	Filamin 3.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CTACCCGGTGGTGCCTGGGAA	0.632													127	180					0	0	0.870114	0	0
TMEM209	84928	broad.mit.edu	37	7	129841882	129841883	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:129841882_129841883GG>AT	uc003vpn.2	-	5	503_504	c.380_381CC>AT	c.(379-381)CCC>CAT	p.P127H	TMEM209_uc010lmc.1_Missense_Mutation_p.P127H|TMEM209_uc003vpo.2_Missense_Mutation_p.P127H	NM_032842	NP_116231	Q96SK2	TM209_HUMAN	transmembrane protein 209	127						integral to membrane				ovary(2)|large_intestine(1)	3	Melanoma(18;0.0435)					AAGGTGGAGCGGGAGGGATTTG	0.46													22	38					0	0	0.115264	0	0
TSGA13	114960	broad.mit.edu	37	7	130364146	130364146	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:130364146C>T	uc003vqi.2	-	5	691	c.234G>A	c.(232-234)AGG>AGA	p.R78R	TSGA13_uc003vqj.2_Silent_p.R78R	NM_052933	NP_443165	Q96PP4	TSG13_HUMAN	testis specific, 13	78										ovary(2)	2	Melanoma(18;0.0435)					TGGTGTTTTTCCTGTTTTGAG	0.448													14	10					0	0	0.457914	0	0
PLXNA4	91584	broad.mit.edu	37	7	132192551	132192551	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:132192551T>C	uc003vra.3	-	2	1131	c.902A>G	c.(901-903)GAG>GGG	p.E301G	PLXNA4_uc003vrc.2_Missense_Mutation_p.E301G|PLXNA4_uc003vrb.2_Missense_Mutation_p.E301G	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	301	Extracellular (Potential).|Sema.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CCCACTGCGCTCACAGCCAAT	0.597													21	37					0	0	0.639603	0	0
SVOPL	136306	broad.mit.edu	37	7	138281185	138281185	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:138281185C>T	uc011kqh.1	-	14	1444	c.1444G>A	c.(1444-1446)GAA>AAA	p.E482K	SVOPL_uc003vue.2_Missense_Mutation_p.E330K	NM_001139456	NP_001132928	Q8N434	SVOPL_HUMAN	SVOP-like isoform 1	482						integral to membrane	transmembrane transporter activity				0						CCTTTGGTTTCGATGGGGAGA	0.488													29	31					0	0	0.812448	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138418934	138418934	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:138418934G>A	uc003vuf.2	-	15	1876	c.1638C>T	c.(1636-1638)ATC>ATT	p.I546I	ATP6V0A4_uc003vug.2_Silent_p.I546I|ATP6V0A4_uc003vuh.2_Silent_p.I546I	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	546	Helical; (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						CAATTCCCAGGATCACCGACA	0.428													20	25					0	0	0.624587	0	0
AGK	55750	broad.mit.edu	37	7	141349069	141349069	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:141349069G>A	uc003vwi.2	+	14	1153	c.982G>A	c.(982-984)GAA>AAA	p.E328K	AGK_uc011krg.1_RNA	NM_018238	NP_060708	Q53H12	AGK_HUMAN	acylglycerol kinase precursor	328					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	mitochondrial membrane	acylglycerol kinase activity|ATP binding|diacylglycerol kinase activity|NAD+ kinase activity			ovary(1)|breast(1)	2	Melanoma(164;0.0171)					TTAGAGCAAAGAAGATTTTCT	0.393													14	31					0	0	0.539581	0	0
OR9A4	130075	broad.mit.edu	37	7	141619006	141619006	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:141619006G>A	uc003vwu.1	+	1	331	c.331G>A	c.(331-333)GAG>AAG	p.E111K		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	111	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					GGGGACAACAGAGTTCGCATT	0.493													58	71					0	0	0.870114	0	0
OR9A4	130075	broad.mit.edu	37	7	141619367	141619367	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:141619367C>T	uc003vwu.1	+	1	692	c.692C>T	c.(691-693)TCC>TTC	p.S231F		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	231	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					ATCCCGTCATCCTCTGGCCGG	0.478													51	66					0	0	0.870114	0	0
EPHA1	2041	broad.mit.edu	37	7	143095045	143095045	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:143095045G>A	uc003wcz.2	-	8	1670	c.1583C>T	c.(1582-1584)TCC>TTC	p.S528F		NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	528	Extracellular (Potential).|Fibronectin type-III 2.					integral to plasma membrane	ATP binding|ephrin receptor activity			ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				ATGATCAGGGGAGAAAGGGCC	0.567													30	58					0	0	0.796494	0	0
OR2F2	135948	broad.mit.edu	37	7	143632997	143632997	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:143632997C>T	uc011ktv.1	+	1	672	c.672C>T	c.(670-672)ACC>ACT	p.T224T		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	224	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					TCATCTCCACCATCCTAAAGA	0.507													25	49					0	0	0.760397	0	0
ARHGEF5	7984	broad.mit.edu	37	7	144061036	144061036	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:144061036C>T	uc003wel.2	+	2	1392	c.1274C>T	c.(1273-1275)GCC>GTC	p.A425V	ARHGEF5_uc003wek.2_Missense_Mutation_p.A425V	NM_005435	NP_005426	Q12774	ARHG5_HUMAN	rho guanine nucleotide exchange factor 5	425					intracellular signal transduction|regulation of Rho protein signal transduction	intracellular	GTP binding|protein binding|Rho guanyl-nucleotide exchange factor activity			skin(2)	2	Melanoma(164;0.14)					TTTCCAGGTGCCTCATATCTC	0.582													21	27					0	0	0.624587	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174830	150174830	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:150174830G>A	uc003whj.2	+	5	2290	c.1960G>A	c.(1960-1962)GAA>AAA	p.E654K		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	654	Potential.					endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		GTCCCAAGCCGAAAAACTCCT	0.463													29	33					0	0	0.769981	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325268	150325268	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:150325268G>A	uc003whn.2	-	3	842	c.418C>T	c.(418-420)CAG>TAG	p.Q140*	GIMAP6_uc003whm.2_Nonsense_Mutation_p.Q60*	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	140							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ACCACCTGCTGATCCTCATCC	0.637													21	47					0	0	0.639603	0	0
NOS3	4846	broad.mit.edu	37	7	150698379	150698379	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:150698379G>A	uc003wif.2	+	11	1590	c.1294G>A	c.(1294-1296)GAG>AAG	p.E432K	NOS3_uc011kuy.1_Missense_Mutation_p.E226K|NOS3_uc011kuz.1_Missense_Mutation_p.E432K|NOS3_uc011kva.1_Missense_Mutation_p.E432K|NOS3_uc011kvb.1_Missense_Mutation_p.E432K	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	432	Interaction with NOSIP.				anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	GAAGCACCTGGAGAATGAGCA	0.622													47	65					0	0	0.870114	0	0
DLGAP2	9228	broad.mit.edu	37	8	1497661	1497661	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:1497661G>A	uc003wpl.2	+	2	899	c.802G>A	c.(802-804)GAC>AAC	p.D268N	DLGAP2_uc003wpm.2_Missense_Mutation_p.D268N	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	347					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		GAGCAACAACGACGTCAAGTG	0.667													24	34					0	0	0.654019	0	0
DLGAP2	9228	broad.mit.edu	37	8	1626678	1626678	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:1626678C>T	uc003wpl.2	+	9	2444	c.2347C>T	c.(2347-2349)CCG>TCG	p.P783S	DLGAP2_uc003wpm.2_Missense_Mutation_p.P769S	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	862					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		GAGGATGTCTCCGTGCCGCAG	0.597													6	7					0	0	0.217242	0	0
MYOM2	9172	broad.mit.edu	37	8	2037890	2037890	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:2037890G>A	uc003wpx.3	+	15	1842	c.1704G>A	c.(1702-1704)CCG>CCA	p.P568P	MYOM2_uc011kwi.1_5'UTR	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	568	Fibronectin type-III 2.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		TGAGATCCCCGAGATATGCCG	0.562													37	18					0	0	0.804634	0	0
DLC1	10395	broad.mit.edu	37	8	12957987	12957987	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:12957987G>A	uc003wwm.2	-	9	2303	c.1859C>T	c.(1858-1860)TCC>TTC	p.S620F	DLC1_uc003wwk.1_Missense_Mutation_p.S183F|DLC1_uc003wwl.1_Missense_Mutation_p.S217F|DLC1_uc011kxx.1_Missense_Mutation_p.S109F	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	620					actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						GCTGATGACGGAGTTAGTCCG	0.642													60	43					0	0	0.870114	0	0
SGCZ	137868	broad.mit.edu	37	8	14412268	14412268	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:14412268C>T	uc003wwq.2	-	2	867	c.207G>A	c.(205-207)TGG>TGA	p.W69*	SGCZ_uc010lss.2_Nonsense_Mutation_p.W56*	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	56	Helical; Signal-anchor for type II membrane protein; (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		CTTTCAATATCCATATTGTCA	0.353													12	34					0	0	0.435327	0	0
TNFRSF10D	8793	broad.mit.edu	37	8	23003370	23003370	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:23003370C>T	uc003xcz.1	-	5	639	c.547G>A	c.(547-549)GAA>AAA	p.E183K		NM_003840	NP_003831	Q9UBN6	TR10D_HUMAN	tumor necrosis factor receptor superfamily,	183	Extracellular (Potential).				anti-apoptosis|apoptosis	integral to membrane	TRAIL binding|transmembrane receptor activity				0		Prostate(55;0.0421)|Breast(100;0.067)		Colorectal(74;0.0147)|COAD - Colon adenocarcinoma(73;0.0612)		GCAGCTGATTCATTTTTGCAC	0.532													52	46					0	0	0.870114	0	0
ADAM28	10863	broad.mit.edu	37	8	24181448	24181448	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:24181448G>A	uc003xdy.2	+	9	905	c.822G>A	c.(820-822)GAG>GAA	p.E274E	ADAM28_uc003xdx.2_Silent_p.E274E|ADAM28_uc011kzz.1_Silent_p.E41E|ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_5'Flank	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	274	Peptidase M12B.|Extracellular (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		TCACCTTGGAGAATTTTTCTA	0.383													13	42					0	0	0.411799	0	0
ADAM28	10863	broad.mit.edu	37	8	24188792	24188792	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:24188792G>A	uc003xdy.2	+	12	1316	c.1233G>A	c.(1231-1233)GGG>GGA	p.G411G	ADAM28_uc003xdx.2_Silent_p.G411G|ADAM28_uc011kzz.1_Silent_p.G178G|ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Silent_p.G98G	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	411	Disintegrin.|Extracellular (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		CAATTTGTGGGAACCAGTTGG	0.408													16	30					0	0	0.557998	0	0
ADAM7	8756	broad.mit.edu	37	8	24300035	24300035	+	Silent	SNP	G	A	A	rs146117431	by1000genomes	TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:24300035G>A	uc003xeb.2	+	2	215	c.102G>A	c.(100-102)AAG>AAA	p.K34K	ADAM7_uc003xea.1_Silent_p.K34K	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	34	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		GTCCTAAAAAGCTTCCTCTGA	0.393													65	159					0	0	0.870114	0	0
NEFM	4741	broad.mit.edu	37	8	24771739	24771739	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:24771739C>T	uc003xed.3	+	1	466	c.433C>T	c.(433-435)CAG>TAG	p.Q145*	NEFM_uc011lac.1_Nonsense_Mutation_p.Q145*|NEFM_uc010lue.2_5'Flank|uc010luc.1_3'UTR	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	145	Linker 1.|Rod.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		CTCGCACGCCCAGCTGGGCGA	0.632													5	4					0	0	0.184627	0	0
HTRA4	203100	broad.mit.edu	37	8	38831791	38831791	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:38831791A>C	uc003xmj.2	+	1	124	c.9A>C	c.(7-9)AGA>AGC	p.R3S		NM_153692	NP_710159	P83105	HTRA4_HUMAN	HtrA serine peptidase 4 precursor	3					proteolysis|regulation of cell growth	extracellular region	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_lung(54;0.0344)|Hepatocellular(245;0.0512)|Lung NSC(58;0.0955)	LUSC - Lung squamous cell carcinoma(45;1.5e-07)			GGATGATTAGACCTCAGCTGC	0.617													13	29					0	0	0.500413	0	0
PXDNL	137902	broad.mit.edu	37	8	52321203	52321203	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:52321203C>T	uc003xqu.3	-	17	3082	c.2981G>A	c.(2980-2982)GGA>GAA	p.G994E	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	994					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				AACCGTGTTTCCCTCCCAGTG	0.637													7	5					0	0	0.307466	0	0
RPS20	6224	broad.mit.edu	37	8	56985774	56985774	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:56985774G>A	uc003xsn.2	-	4	433	c.235C>T	c.(235-237)CGT>TGT	p.R79C	RPS20_uc003xsm.2_Missense_Mutation_p.R79C	NM_001023	NP_001014	P60866	RS20_HUMAN	ribosomal protein S20 isoform 2	79					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	protein binding|RNA binding|structural constituent of ribosome				0		all_lung(136;0.0548)|Lung NSC(129;0.0718)|all_epithelial(80;0.155)	Epithelial(17;0.00117)|all cancers(17;0.00879)			ATCTGGAAACGATCCCACGTC	0.398													39	49					0	0	0.870114	0	0
SDR16C5	195814	broad.mit.edu	37	8	57218206	57218206	+	Silent	SNP	T	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:57218206T>C	uc003xsy.1	-	6	1424	c.786A>G	c.(784-786)AAA>AAG	p.K262K	SDR16C5_uc010lyk.1_Silent_p.K262K|SDR16C5_uc010lyl.1_Silent_p.K218K	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	262					detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						ACAAGTACATTTTTTCTTGTA	0.318													17	17					0	0	0.592651	0	0
PREX2	80243	broad.mit.edu	37	8	69069587	69069587	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:69069587G>A	uc003xxv.1	+	35	4289	c.4262G>A	c.(4261-4263)AGA>AAA	p.R1421K		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1421					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TATTATTACAGAGACAATGTT	0.353													14	51					0	0	0.500413	0	0
XKR9	389668	broad.mit.edu	37	8	71646559	71646559	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:71646559G>A	uc003xyq.2	+	5	1556	c.1022G>A	c.(1021-1023)GGG>GAG	p.G341E	XKR9_uc010lze.2_Missense_Mutation_p.G341E|XKR9_uc010lzd.2_Missense_Mutation_p.G209E	NM_001011720	NP_001011720	Q5GH70	XKR9_HUMAN	XK, Kell blood group complex subunit-related	341						integral to membrane				ovary(1)|skin(1)	2	Breast(64;0.0716)		Epithelial(68;0.00301)|all cancers(69;0.0165)|OV - Ovarian serous cystadenocarcinoma(28;0.0524)|BRCA - Breast invasive adenocarcinoma(89;0.166)			GTTTATTATGGGAGTTTTCAC	0.313													6	13					0	0	0.248553	0	0
KCNB2	9312	broad.mit.edu	37	8	73480322	73480322	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:73480322C>T	uc003xzb.2	+	2	941	c.353C>T	c.(352-354)TCG>TTG	p.S118L		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	118	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			TGTGCACTTTCGTTTGGCCAA	0.423													24	29					0	0	0.693898	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766897	77766897	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:77766897G>A	uc003yav.2	+	10	7992	c.7605G>A	c.(7603-7605)AGG>AGA	p.R2535R	ZFHX4_uc003yau.1_Silent_p.R2580R|ZFHX4_uc003yaw.1_Silent_p.R2535R	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2535						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CCCTAAAAAGGAAACTAGACG	0.502										HNSCC(33;0.089)			5	20					0	0	0.217242	0	0
RALYL	138046	broad.mit.edu	37	8	85441693	85441693	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:85441693G>A	uc003ycq.3	+	3	553	c.137G>A	c.(136-138)GGA>GAA	p.G46E	RALYL_uc003ycr.3_Missense_Mutation_p.G46E|RALYL_uc003ycs.3_Missense_Mutation_p.G46E|RALYL_uc010lzy.2_Missense_Mutation_p.G46E|RALYL_uc003yct.3_Missense_Mutation_p.G59E	NM_001100392	NP_001093862	Q86SE5	RALYL_HUMAN	RALY RNA binding protein-like isoform 2	46	RRM.						identical protein binding|nucleotide binding|RNA binding			ovary(1)	1						TCAAAGTATGGAAAAATAGTT	0.418													10	12					0	0	0.411799	0	0
ATP6V0D2	245972	broad.mit.edu	37	8	87165108	87165108	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:87165108A>C	uc003ydp.1	+	8	1024	c.955A>C	c.(955-957)AAG>CAG	p.K319Q		NM_152565	NP_689778	Q8N8Y2	VA0D2_HUMAN	ATPase, H+ transporting, lysosomal 38kDa, V0	319					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	apical plasma membrane|endosome membrane|proton-transporting V-type ATPase, V0 domain|vacuolar proton-transporting V-type ATPase complex	hydrogen ion transmembrane transporter activity|protein binding				0						TGCATATGTAAAGCTGAAGGA	0.353													29	81					0	0	0.812448	0	0
RBM12B	389677	broad.mit.edu	37	8	94747873	94747873	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:94747873G>A	uc003yfz.2	-	3	959	c.766C>T	c.(766-768)CCA>TCA	p.P256S		NM_203390	NP_976324	Q8IXT5	RB12B_HUMAN	RNA binding motif protein 12B	256							nucleotide binding|RNA binding				0	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.0168)			ATTCCTCTTGGTGGAGAATGT	0.393													30	68					0	0	0.740014	0	0
GRHL2	79977	broad.mit.edu	37	8	102505011	102505011	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:102505011C>T	uc010mbu.2	+	1	344	c.14C>T	c.(13-15)TCG>TTG	p.S5L	GRHL2_uc010mbt.1_Missense_Mutation_p.S5L|GRHL2_uc011lhi.1_Missense_Mutation_p.S5L	NM_024915	NP_079191	Q6ISB3	GRHL2_HUMAN	transcription factor CP2-like 3	5	Transcription activation.					cytoplasm|nucleus	DNA binding			ovary(2)|skin(1)	3	all_cancers(14;4.39e-08)|all_epithelial(15;4.09e-10)|Lung NSC(17;7.11e-06)|all_lung(17;1.44e-05)		Epithelial(11;5.81e-09)|all cancers(13;3.81e-07)|OV - Ovarian serous cystadenocarcinoma(57;0.000213)			TCACAAGAGTCGGACAAGTAA	0.438													22	54					0	0	0.693898	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110453598	110453598	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:110453598G>A	uc003yne.2	+	34	4298	c.4194G>A	c.(4192-4194)GGG>GGA	p.G1398G		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1398	Extracellular (Potential).|IPT/TIG 7.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CCAACAATGGGAAAGATTCAG	0.279										HNSCC(38;0.096)			5	5					0	0	0.248553	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110493695	110493695	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:110493695C>T	uc003yne.2	+	56	9465	c.9361C>T	c.(9361-9363)CCT>TCT	p.P3121S		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3121	Extracellular (Potential).|G8 2.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GGAAGATAACCCTTTTAAAGG	0.378										HNSCC(38;0.096)			3	7					0	0	0.217242	0	0
KCNV1	27012	broad.mit.edu	37	8	110980337	110980337	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:110980337C>T	uc003ynr.3	-	3	1825	c.1483G>A	c.(1483-1485)GGA>AGA	p.G495R	KCNV1_uc010mcw.2_Missense_Mutation_p.G495R	NM_014379	NP_055194	Q6PIU1	KCNV1_HUMAN	potassium channel, subfamily V, member 1	495	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ion channel inhibitor activity|potassium channel regulator activity|voltage-gated potassium channel activity			lung(1)|kidney(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;5.35e-13)			AAATCATCTCCCCCGCTGCTC	0.373													14	20					0	0	0.520397	0	0
FER1L6	654463	broad.mit.edu	37	8	125076659	125076659	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:125076659C>T	uc003yqw.2	+	26	3606	c.3400C>T	c.(3400-3402)CAC>TAC	p.H1134Y	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1134	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			CCCAGCAGATCACATTTATGT	0.572													57	77					0	0	0.870114	0	0
ZFAT	57623	broad.mit.edu	37	8	135614561	135614561	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:135614561G>A	uc003yup.2	-	6	1576	c.1401C>T	c.(1399-1401)TTC>TTT	p.F467F	ZFAT_uc003yun.2_Silent_p.F455F|ZFAT_uc003yuo.2_Silent_p.F455F|ZFAT_uc010meh.2_Silent_p.F455F|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Silent_p.F455F|ZFAT_uc010mej.2_Silent_p.F405F|ZFAT_uc003yur.2_Silent_p.F455F	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	467	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			TGGAGCTGACGAACTTCTTGC	0.607													10	27					0	0	0.435327	0	0
FAM135B	51059	broad.mit.edu	37	8	139165169	139165169	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:139165169C>T	uc003yuy.2	-	13	1720	c.1549G>A	c.(1549-1551)GAA>AAA	p.E517K	FAM135B_uc003yux.2_Missense_Mutation_p.E418K|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.E79K|FAM135B_uc003yvb.2_Missense_Mutation_p.E79K	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	517										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GTCCAACATTCATCTTCAGGC	0.458										HNSCC(54;0.14)			60	68					0	0	0.870114	0	0
FAM135B	51059	broad.mit.edu	37	8	139165196	139165196	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:139165196G>A	uc003yuy.2	-	13	1693	c.1522C>T	c.(1522-1524)CAA>TAA	p.Q508*	FAM135B_uc003yux.2_Nonsense_Mutation_p.Q409*|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Nonsense_Mutation_p.Q70*|FAM135B_uc003yvb.2_Nonsense_Mutation_p.Q70*	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	508										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GCTTTGTTTTGAAATTCACCA	0.438										HNSCC(54;0.14)			32	81					0	0	0.812448	0	0
COL22A1	169044	broad.mit.edu	37	8	139824127	139824127	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:139824127G>A	uc003yvd.2	-	9	1811	c.1364C>T	c.(1363-1365)CCC>CTC	p.P455L		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	455	Pro-rich.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CTGGGGTGGGGGTGGAGGTGG	0.597										HNSCC(7;0.00092)			11	2					0	0	0.435327	0	0
DENND3	22898	broad.mit.edu	37	8	142166030	142166030	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:142166030C>T	uc003yvy.2	+	8	1195	c.917C>T	c.(916-918)CCT>CTT	p.P306L	DENND3_uc010mep.2_Missense_Mutation_p.P319L|DENND3_uc003yvz.1_5'Flank	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	306										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			GTGGACATTCCTGATGTCCCC	0.448													42	51					0	0	0.870114	0	0
EPPK1	83481	broad.mit.edu	37	8	144940333	144940333	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:144940333G>A	uc003zaa.1	-	2	15112	c.15099C>T	c.(15097-15099)TAC>TAT	p.Y5033Y		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	5033	Plectin 64.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			AGCCGCGCCGGTAGGCCACGT	0.692													12	340					0	0	0.592651	0	0
OPLAH	26873	broad.mit.edu	37	8	145112555	145112555	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:145112555G>A	uc003zar.3	-	10	1300	c.1218C>T	c.(1216-1218)TTC>TTT	p.F406F	OPLAH_uc003zas.1_5'Flank|OPLAH_uc003zat.1_3'UTR	NM_017570	NP_060040	O14841	OPLA_HUMAN	5-oxoprolinase (ATP-hydrolysing)	406							5-oxoprolinase (ATP-hydrolyzing) activity|ATP binding				0	all_cancers(97;1.06e-10)|all_epithelial(106;1.5e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;2.24e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		L-Glutamic Acid(DB00142)	AAATGCAGGGGAAGGAGGCAG	0.642													4	35					0	0	0.217242	0	0
FOXD4	2298	broad.mit.edu	37	9	116808	116808	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:116808G>A	uc003zfz.2	-	1	1610	c.1312C>T	c.(1312-1314)CCC>TCC	p.P438S		NM_207305	NP_997188	Q12950	FOXD4_HUMAN	forkhead box D4	438					axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	all_lung(41;0.218)	all_cancers(5;0.0395)|Acute lymphoblastic leukemia(5;1.91e-07)|all_hematologic(5;1.95e-06)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		CTCTAGGAGGGCCCTGCGGAC	0.657													5	12					0	0	0.184627	0	0
SMARCA2	6595	broad.mit.edu	37	9	2086993	2086993	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:2086993C>T	uc003zhc.2	+	18	2790	c.2691C>T	c.(2689-2691)TTC>TTT	p.F897F	SMARCA2_uc003zhd.2_Silent_p.F897F|SMARCA2_uc010mha.2_Intron	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	897	Helicase ATP-binding.				chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		TCCTCAACTTCCTCCTCCCAA	0.498													29	20					0	0	0.729181	0	0
SMARCA2	6595	broad.mit.edu	37	9	2181573	2181573	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:2181573C>T	uc003zhc.2	+	30	4355	c.4256C>T	c.(4255-4257)TCA>TTA	p.S1419L	SMARCA2_uc003zhd.2_Missense_Mutation_p.S1401L|SMARCA2_uc010mha.2_Missense_Mutation_p.S1334L|SMARCA2_uc011llw.1_Missense_Mutation_p.S105L|SMARCA2_uc003zhf.2_Missense_Mutation_p.S83L|SMARCA2_uc011llx.1_Missense_Mutation_p.S65L|SMARCA2_uc003zhe.2_Missense_Mutation_p.S107L|SMARCA2_uc003zhg.2_Missense_Mutation_p.S65L|SMARCA2_uc010mhb.2_Missense_Mutation_p.S89L	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	1419	Bromo.				chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		TCCTACAGTTCAGGGCGACAG	0.333													20	9					0	0	0.624587	0	0
IFNA14	3448	broad.mit.edu	37	9	21239422	21239422	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:21239422G>A	uc010mis.2	-	1	557	c.513C>T	c.(511-513)ATC>ATT	p.I171I	IFNA14_uc003zoo.1_RNA	NM_002172	NP_002163	P01570	IFN14_HUMAN	interferon, alpha 14 precursor	171					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		GGGATCTCATGATTTCTGCTC	0.393													156	101					0	0	0.870114	0	0
CDKN2A	1029	broad.mit.edu	37	9	21971029	21971029	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:21971029C>T	uc003zpk.2	-	2	541	c.329G>A	c.(328-330)TGG>TAG	p.W110*	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Silent_p.L165L	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	110	ANK 4.				cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.W110*(38)|p.?(13)|p.H83fs*2(2)|p.W110fs*9(1)|p.D105fs*8(1)|p.A68fs*3(1)|p.R107fs*33(1)|p.W110fs*36(1)|p.W110C(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		CAGACGGCCCCAGGCATCGCG	0.731		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			25	8					0	0	0.706142	0	0
DMRTA1	63951	broad.mit.edu	37	9	22451440	22451440	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:22451440C>T	uc003zpp.1	+	2	1270	c.1045C>T	c.(1045-1047)CTA>TTA	p.L349L		NM_022160	NP_071443	Q5VZB9	DMRTA_HUMAN	DMRT-like family A1	349					cell differentiation|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|skin(1)	2		all_cancers(5;4.09e-243)|Acute lymphoblastic leukemia(3;8.25e-150)|all_hematologic(3;4.25e-147)|Esophageal squamous(3;2.32e-09)|Renal(3;1.71e-07)|Breast(3;2.07e-06)|Hepatocellular(5;0.00563)		GBM - Glioblastoma multiforme(1;5.12e-278)|Lung(24;8.2e-52)|LUSC - Lung squamous cell carcinoma(38;1.46e-37)|OV - Ovarian serous cystadenocarcinoma(39;0.0517)		AGAAGGCATTCTACGGTTCTG	0.468													29	14					0	0	0.819951	0	0
TRPM6	140803	broad.mit.edu	37	9	77343174	77343174	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:77343174G>A	uc004ajl.1	-	38	6154	c.5916C>T	c.(5914-5916)TGC>TGT	p.C1972C	TRPM6_uc004ajk.1_Silent_p.C1967C|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Silent_p.C923C|TRPM6_uc010mpd.1_Silent_p.C805C|TRPM6_uc010mpe.1_Silent_p.C519C|TRPM6_uc004ajj.1_Silent_p.C928C	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1972	Alpha-type protein kinase.|Cytoplasmic (Potential).	Zinc (By similarity).			response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TGAGCTTCCGGCAGCAGGAGT	0.403													44	11					0	0	0.870114	0	0
C9orf79	286234	broad.mit.edu	37	9	90501321	90501321	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:90501321C>T	uc004app.3	+	4	1954	c.1919C>T	c.(1918-1920)TCC>TTC	p.S640F	C9orf79_uc004apo.1_Missense_Mutation_p.S452F	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	640						integral to membrane				ovary(3)	3						CAGGAGCAGTCCTGTGGCCCT	0.632													16	11					0	0	0.479597	0	0
C9orf79	286234	broad.mit.edu	37	9	90501427	90501427	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:90501427C>T	uc004app.3	+	4	2060	c.2025C>T	c.(2023-2025)CTC>CTT	p.L675L	C9orf79_uc004apo.1_Silent_p.L487L	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	675						integral to membrane				ovary(3)	3						AGCAGGCCCTCTTGCCCTCCC	0.612													14	8					0	0	0.479597	0	0
SHC3	53358	broad.mit.edu	37	9	91686121	91686121	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:91686121C>T	uc004aqg.2	-	5	1083	c.776G>A	c.(775-777)GGA>GAA	p.G259E		NM_016848	NP_058544	Q92529	SHC3_HUMAN	src homology 2 domain-containing transforming	259	PID.				central nervous system development|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	protein binding|signal transducer activity			lung(3)|skin(1)	4						TACCGGGTCTCCCCCAGAGGC	0.498													29	15					0	0	0.812448	0	0
SEMA4D	10507	broad.mit.edu	37	9	91993689	91993689	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:91993689G>A	uc004aqo.1	-	18	3091	c.2519C>T	c.(2518-2520)TCT>TTT	p.S840F	SEMA4D_uc011ltm.1_Intron|SEMA4D_uc011ltn.1_Intron|SEMA4D_uc011lto.1_Intron|SEMA4D_uc004aqp.1_Missense_Mutation_p.S838F	NM_006378	NP_006369	Q92854	SEM4D_HUMAN	semaphorin 4D isoform 1	840	Cytoplasmic (Potential).				anti-apoptosis|axon guidance|cell adhesion|immune response	integral to membrane|plasma membrane	receptor activity|receptor binding			ovary(1)|pancreas(1)	2						GTCCCTGGCAGAAAGGTCGTC	0.602													25	10					0	0	0.681144	0	0
FBP2	8789	broad.mit.edu	37	9	97333797	97333797	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:97333797T>C	uc004auv.2	-	4	581	c.514A>G	c.(514-516)ACC>GCC	p.T172A	uc004auu.2_Intron	NM_003837	NP_003828	O00757	F16P2_HUMAN	fructose-1,6-bisphosphatase 2	172					fructose metabolic process|gluconeogenesis	cytosol	fructose 1,6-bisphosphate 1-phosphatase activity|fructose-2,6-bisphosphate 2-phosphatase activity|metal ion binding				0		Acute lymphoblastic leukemia(62;0.136)				GCCACCAGGGTTGCACTACCG	0.572													32	14					0	0	0.819951	0	0
TMEM38B	55151	broad.mit.edu	37	9	108467982	108467982	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:108467982C>T	uc004bcu.1	+	2	334	c.217C>T	c.(217-219)CCA>TCA	p.P73S	TMEM38B_uc010mtn.1_Missense_Mutation_p.P73S	NM_018112	NP_060582	Q9NVV0	TM38B_HUMAN	transmembrane protein 38B	73	Cytoplasmic (Potential).					integral to membrane|nuclear membrane|sarcoplasmic reticulum membrane	potassium channel activity			ovary(1)|skin(1)	2						TGCAGAGCCTCCATTGAAGTT	0.418													45	19					0	0	0.870114	0	0
SVEP1	79987	broad.mit.edu	37	9	113170022	113170022	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:113170022C>T	uc010mtz.2	-	38	8195	c.7858G>A	c.(7858-7860)GAT>AAT	p.D2620N	SVEP1_uc010mty.2_Missense_Mutation_p.D546N	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2620					cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TCTCCAAAATCTATATGAGGA	0.463													85	30					0	0	0.870114	0	0
C5	727	broad.mit.edu	37	9	123779744	123779744	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:123779744C>T	uc004bkv.2	-	14	1792	c.1762G>A	c.(1762-1764)GTG>ATG	p.V588M	C5_uc010mvm.1_Missense_Mutation_p.V588M|C5_uc010mvn.1_Missense_Mutation_p.V588M	NM_001735	NP_001726	P01031	CO5_HUMAN	complement component 5 preproprotein	588					activation of MAPK activity|chemotaxis|complement activation, alternative pathway|complement activation, classical pathway|cytolysis|G-protein coupled receptor protein signaling pathway|inflammatory response|negative regulation of macrophage chemotaxis|positive regulation of chemokine secretion|positive regulation vascular endothelial growth factor production	extracellular space|membrane attack complex	chemokine activity|endopeptidase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(323;4.98e-53)|GBM - Glioblastoma multiforme(294;0.0242)	Eculizumab(DB01257)	TTAAGAGACACAGTTTGGCCT	0.423													21	10					0	0	0.654019	0	0
OR1J1	347168	broad.mit.edu	37	9	125239735	125239735	+	Silent	SNP	A	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:125239735A>C	uc011lyu.1	-	1	471	c.471T>G	c.(469-471)CTT>CTG	p.L157L	OR1J2_uc004bmj.1_Intron	NM_001004451	NP_001004451	Q8NGS3	OR1J1_HUMAN	olfactory receptor, family 1, subfamily J,	157	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.L157F(1)		skin(2)	2						GGGTATGCAAAAGAGCACACG	0.547													10	5					0	0	0.387290	0	0
PPP6C	5537	broad.mit.edu	37	9	127915925	127915925	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:127915925G>A	uc004bpg.3	-	6	777	c.556C>T	c.(556-558)CCT>TCT	p.P186S	PPP6C_uc010mwv.2_Missense_Mutation_p.P223S|PPP6C_uc010mww.2_Missense_Mutation_p.P164S|PPP6C_uc011lzr.1_Missense_Mutation_p.P39S	NM_002721	NP_002712	O00743	PPP6_HUMAN	protein phosphatase 6, catalytic subunit isoform	186					G1/S transition of mitotic cell cycle|protein dephosphorylation	cytosol	metal ion binding|protein binding|protein serine/threonine phosphatase activity			ovary(1)|skin(1)	2						CCTTTATGAGGAATTTCCTGA	0.433													26	9					0	0	0.706142	0	0
IER5L	389792	broad.mit.edu	37	9	131939648	131939648	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:131939648G>A	uc010myt.1	-	1	893	c.684C>T	c.(682-684)GCC>GCT	p.A228A		NM_203434	NP_982258	Q5T953	IER5L_HUMAN	immediate early response 5-like	228	Ala-rich.										0		Ovarian(14;0.0448)|Medulloblastoma(224;0.235)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0178)		aggaggcgggggccggggagg	0.363													15	5					0	0	0.557998	0	0
FIBCD1	84929	broad.mit.edu	37	9	133787192	133787192	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:133787192C>T	uc004bzz.2	-	5	1178	c.933G>A	c.(931-933)GGG>GGA	p.G311G	FIBCD1_uc011mcc.1_Silent_p.G311G	NM_032843	NP_116232	Q8N539	FBCD1_HUMAN	fibrinogen C domain containing 1	311	Fibrinogen C-terminal.|Extracellular (Potential).				signal transduction	extracellular space|integral to membrane	chitin binding|metal ion binding|receptor binding				0	all_hematologic(7;0.0028)			OV - Ovarian serous cystadenocarcinoma(145;3.52e-05)|Epithelial(140;0.00019)		GCCAGTGCTCCCCGGTGAGCC	0.662													6	2					0	0	0.278610	0	0
DDX31	64794	broad.mit.edu	37	9	135545422	135545422	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:135545422C>T	uc004cbq.1	-	1	367	c.215G>A	c.(214-216)AGG>AAG	p.R72K	DDX31_uc010mzu.1_Missense_Mutation_p.R72K|DDX31_uc004cbr.1_Missense_Mutation_p.R72K|DDX31_uc004cbs.1_Missense_Mutation_p.R72K|GTF3C4_uc010mzv.2_5'Flank|GTF3C4_uc010mzw.2_5'Flank	NM_022779	NP_073616	Q9H8H2	DDX31_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 31	72						nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(145;2.67e-06)|Epithelial(140;7.61e-05)		GCCACCGCCCCTTCCGGGTCC	0.756													3	0					0	0	0.150653	0	0
FCN2	2220	broad.mit.edu	37	9	137778323	137778323	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:137778323C>T	uc004cfg.1	+	7	617	c.607C>T	c.(607-609)CAG>TAG	p.Q203*	FCN2_uc004cfh.1_Nonsense_Mutation_p.Q165*	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	203	Fibrinogen C-terminal.				complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		GGACAACTACCAGTTTGCTAA	0.547													55	24					0	0	0.870114	0	0
FAM166A	401565	broad.mit.edu	37	9	140139596	140139596	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:140139596G>A	uc004cmi.1	-	4	652	c.597C>T	c.(595-597)TTC>TTT	p.F199F		NM_001001710	NP_001001710	Q6J272	F166A_HUMAN	hypothetical protein LOC401565	199										ovary(1)	1						GCAGCCGCTGGAAGCTGCCCA	0.677													31	12					0	0	0.779181	0	0
ENTPD8	377841	broad.mit.edu	37	9	140332468	140332468	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr9:140332468C>T	uc004cmw.2	-	3	379	c.195G>A	c.(193-195)AAG>AAA	p.K65K	C9orf167_uc011mew.1_Intron|ENTPD8_uc004cmx.2_Silent_p.K65K|ENTPD8_uc004cmy.2_Silent_p.K65K	NM_001033113	NP_001028285	Q5MY95	ENTP8_HUMAN	ectonucleoside triphosphate diphosphohydrolase 8	65	Extracellular (Potential).					integral to membrane|plasma membrane	ATP binding			skin(1)	1	all_cancers(76;0.0926)			OV - Ovarian serous cystadenocarcinoma(145;0.000224)|Epithelial(140;0.000898)		TGCCATTCTCCTTGTTCGCCA	0.622													11	28					0	0	0.435327	0	0
ARSF	416	broad.mit.edu	37	X	3030310	3030310	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:3030310G>A	uc004cre.1	+	11	1707	c.1486G>A	c.(1486-1488)GAA>AAA	p.E496K	ARSF_uc004crf.1_Missense_Mutation_p.E496K	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	496						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				ATGTTTCGGAGAACAGGTTAC	0.547													23	32					0	0	0.717897	0	0
MXRA5	25878	broad.mit.edu	37	X	3228885	3228885	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:3228885C>T	uc004crg.3	-	7	7516	c.7359G>A	c.(7357-7359)CGG>CGA	p.R2453R		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2453	Ig-like C2-type 9.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CTGCTATCTCCCGCACAGTGG	0.587													10	10					0	0	0.387290	0	0
MXRA5	25878	broad.mit.edu	37	X	3235847	3235847	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:3235847C>T	uc004crg.3	-	6	6032	c.5875G>A	c.(5875-5877)GAC>AAC	p.D1959N		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1959	Ig-like C2-type 4.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				ACAGTGACGTCCTGGTAGTGG	0.577													3	41					0	0	0.184627	0	0
MXRA5	25878	broad.mit.edu	37	X	3235891	3235891	+	Missense_Mutation	SNP	G	A	A	rs137882293		TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:3235891G>A	uc004crg.3	-	6	5988	c.5831C>T	c.(5830-5832)TCG>TTG	p.S1944L		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1944	Ig-like C2-type 3.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CACGGTGACCGAAAGCAAGAC	0.552													3	47					0	0	0.115264	0	0
CLCN4	1183	broad.mit.edu	37	X	10181783	10181783	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:10181783G>A	uc004csy.3	+	11	2069	c.1639G>A	c.(1639-1641)GAG>AAG	p.E547K	CLCN4_uc011mid.1_Missense_Mutation_p.E453K	NM_001830	NP_001821	P51793	CLCN4_HUMAN	chloride channel 4	547						early endosome membrane|integral to membrane|late endosome membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						CGGGGGTCTGGAGTACATCGT	0.527													4	64					0	0	0.184627	0	0
TLR7	51284	broad.mit.edu	37	X	12905625	12905625	+	Silent	SNP	T	C	C			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:12905625T>C	uc004cvc.2	+	3	2137	c.1998T>C	c.(1996-1998)CCT>CCC	p.P666P		NM_016562	NP_057646	Q9NYK1	TLR7_HUMAN	toll-like receptor 7 precursor	666	Extracellular (Potential).|LRR 22.				cellular response to mechanical stimulus|defense response to virus|I-kappaB phosphorylation|inflammatory response|innate immune response|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus	early phagosome|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosome|plasma membrane	double-stranded RNA binding|single-stranded RNA binding|siRNA binding|transmembrane receptor activity			ovary(2)|lung(2)|breast(1)	5					Imiquimod(DB00724)	GTTTCTTGCCTTCTGGAGTTT	0.348													22	21					0	0	0.654019	0	0
BEND2	139105	broad.mit.edu	37	X	18221933	18221933	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:18221933C>T	uc004cyj.3	-	5	749	c.595G>A	c.(595-597)GAA>AAA	p.E199K	BEND2_uc010nfb.2_Missense_Mutation_p.E199K	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	199										ovary(3)|kidney(1)|central_nervous_system(1)	5						AGGTCTGCTTCCTGCAGTTCA	0.488													45	60					0	0	0.870114	0	0
GPR64	10149	broad.mit.edu	37	X	19028764	19028764	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:19028764G>A	uc004cyx.2	-	17	1396	c.1232C>T	c.(1231-1233)TCC>TTC	p.S411F	GPR64_uc004cyy.2_Missense_Mutation_p.S408F|GPR64_uc004cyz.2_Missense_Mutation_p.S397F|GPR64_uc004czb.2_Missense_Mutation_p.S411F|GPR64_uc004czc.2_Missense_Mutation_p.S395F|GPR64_uc004czd.2_Missense_Mutation_p.S387F|GPR64_uc004cze.2_Missense_Mutation_p.S381F|GPR64_uc004czf.2_Missense_Mutation_p.S373F|GPR64_uc004cza.2_Missense_Mutation_p.S389F|GPR64_uc004cyw.2_Missense_Mutation_p.S395F|GPR64_uc010nfj.2_Missense_Mutation_p.S381F	NM_001079858	NP_001073327	Q8IZP9	GPR64_HUMAN	G protein-coupled receptor 64 isoform 1	411	Extracellular (Potential).				neuropeptide signaling pathway|spermatogenesis	cytoplasm|integral to plasma membrane	G-protein coupled receptor activity				0	Hepatocellular(33;0.183)					GTCAGGCGGGGAATGAAGGAG	0.537													11	92					0	0	0.520397	0	0
KLHL15	80311	broad.mit.edu	37	X	24006881	24006881	+	Silent	SNP	G	A	A	rs144704626	by1000genomes	TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:24006881G>A	uc004dba.3	-	4	1228	c.972C>T	c.(970-972)ATC>ATT	p.I324I		NM_030624	NP_085127	Q96M94	KLH15_HUMAN	kelch-like 15	324										ovary(1)|breast(1)	2						AATTATTGACGATAGCAAGGC	0.468													24	24					0	0	0.760397	0	0
KIAA2022	340533	broad.mit.edu	37	X	73960605	73960605	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:73960605G>A	uc004eby.2	-	3	4404	c.3787C>T	c.(3787-3789)CAA>TAA	p.Q1263*		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1263					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						CCACCATGTTGGATACATTCA	0.517													3	6					0	0	0.150653	0	0
ATRX	546	broad.mit.edu	37	X	76939747	76939747	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:76939747G>A	uc004ecp.3	-	9	1233	c.1001C>T	c.(1000-1002)TCC>TTC	p.S334F	ATRX_uc004ecq.3_Missense_Mutation_p.S296F|ATRX_uc004eco.3_Missense_Mutation_p.S119F|ATRX_uc004ecr.2_Missense_Mutation_p.S295F|ATRX_uc010nlx.1_Missense_Mutation_p.S334F|ATRX_uc010nly.1_Missense_Mutation_p.S279F	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	334					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	GCCAGAACAGGAATCATCTAA	0.358			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						7	6					0	0	0.248553	0	0
GPR174	84636	broad.mit.edu	37	X	78427035	78427035	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:78427035C>T	uc004edg.1	+	1	567	c.531C>T	c.(529-531)GTC>GTT	p.V177V		NM_032553	NP_115942	Q9BXC1	GP174_HUMAN	putative purinergic receptor FKSG79	177	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(1)|central_nervous_system(1)	2						CCAGGAATGTCAACCTGGCCC	0.463										HNSCC(63;0.18)			19	28					0	0	0.639603	0	0
ZNF711	7552	broad.mit.edu	37	X	84526097	84526097	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:84526097C>T	uc004eeo.2	+	9	1896	c.1549C>T	c.(1549-1551)CCT>TCT	p.P517S	ZNF711_uc004eep.2_Missense_Mutation_p.P517S|ZNF711_uc004eeq.2_Missense_Mutation_p.P563S|ZNF711_uc011mqy.1_Missense_Mutation_p.P116S	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	517	C2H2-type 4.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						TTTTCGACATCCTTCTGAACT	0.408													16	19					0	0	0.592651	0	0
ZNF711	7552	broad.mit.edu	37	X	84526218	84526218	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:84526218G>A	uc004eeo.2	+	9	2017	c.1670G>A	c.(1669-1671)GGT>GAT	p.G557D	ZNF711_uc004eep.2_Missense_Mutation_p.G557D|ZNF711_uc004eeq.2_Missense_Mutation_p.G603D|ZNF711_uc011mqy.1_Missense_Mutation_p.G156D	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	557					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						TCTAAACATGGTAACAATTTG	0.398													6	8					0	0	0.278610	0	0
POF1B	79983	broad.mit.edu	37	X	84537226	84537226	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:84537226C>T	uc004eer.2	-	16	1893	c.1747G>A	c.(1747-1749)GAA>AAA	p.E583K	POF1B_uc004ees.2_Missense_Mutation_p.E583K	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	583							actin binding				0						TATTTGTCTTCTGTTTTCTCA	0.358													5	23					0	0	0.307466	0	0
ARL13A	392509	broad.mit.edu	37	X	100243250	100243250	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:100243250A>G	uc004ego.2	+	7	838	c.722A>G	c.(721-723)AAG>AGG	p.K241R	ARL13A_uc011mrf.1_Missense_Mutation_p.K241R|ARL13A_uc010nng.2_Missense_Mutation_p.K241R	NM_001012990	NP_001013008	Q5H913	AR13A_HUMAN	ADP-ribosylation factor-like 13 isoform a	241							GTP binding			ovary(1)	1						ATCGAAGCTAAGCCTCTAAAG	0.448													4	7					0	0	0.184627	0	0
TRMT2B	79979	broad.mit.edu	37	X	100290673	100290673	+	Splice_Site	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:100290673C>T	uc004egq.2	-	6	838	c.539_splice	c.e6-1	p.D180_splice	TRMT2B_uc004egp.2_Splice_Site|TRMT2B_uc004egr.2_Splice_Site_p.D180_splice|TRMT2B_uc004egs.2_Splice_Site_p.D180_splice|TRMT2B_uc004egt.2_Splice_Site_p.D180_splice|TRMT2B_uc004egu.2_Splice_Site_p.D61_splice|TRMT2B_uc004egv.2_Splice_Site_p.D135_splice	NM_024917	NP_079193	Q96GJ1	TRM2_HUMAN	TRM2 tRNA methyltransferase 2 homolog B								tRNA (uracil-5-)-methyltransferase activity			ovary(1)	1						ACGTTCCCATCTATGGAAAGA	0.363													7	50					0	0	0.307466	0	0
TMEM35	59353	broad.mit.edu	37	X	100349862	100349862	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:100349862G>A	uc004egw.2	+	2	577	c.421G>A	c.(421-423)GAG>AAG	p.E141K		NM_021637	NP_067650	Q53FP2	TMM35_HUMAN	transmembrane protein 35	141						cytoplasmic membrane-bounded vesicle|integral to membrane|peroxisomal membrane					0						CCGGTCTTCTGAGAAGAAGCC	0.537													19	24					0	0	0.624587	0	0
BTK	695	broad.mit.edu	37	X	100626636	100626636	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:100626636G>A	uc004ehg.2	-	4	487	c.294C>T	c.(292-294)TTC>TTT	p.F98F	BTK_uc010nnn.2_Silent_p.F98F|BTK_uc010nno.2_Silent_p.F132F|BTK_uc004ehi.2_Silent_p.F98F	NM_000061	NP_000052	Q06187	BTK_HUMAN	Bruton agammaglobulinemia tyrosine kinase	98	PH.				calcium-mediated signaling|induction of apoptosis by extracellular signals|mesoderm development	cytosol|membrane raft|nucleus|plasma membrane	ATP binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol-3,4,5-trisphosphate binding			lung(3)|central_nervous_system(2)|ovary(1)	6						AGGGATAAGGGAACCTTTCAA	0.433									Agammaglobulinemia_X-linked				35	23					0	0	0.864702	0	0
ZMAT1	84460	broad.mit.edu	37	X	101138892	101138892	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:101138892G>A	uc004eim.2	-	2	4492	c.994C>T	c.(994-996)CAG>TAG	p.Q332*	ZMAT1_uc011mrl.1_Nonsense_Mutation_p.Q503*|ZMAT1_uc004ein.2_Nonsense_Mutation_p.Q332*|ZMAT1_uc011mrm.1_Nonsense_Mutation_p.Q332*	NM_032441	NP_115817	Q5H9K5	ZMAT1_HUMAN	zinc finger, matrin type 1 isoform 3	332						nucleus	zinc ion binding			ovary(1)	1						TTTTCTTGCTGATTAAGGCTC	0.408													4	8					0	0	0.248553	0	0
MUM1L1	139221	broad.mit.edu	37	X	105450224	105450224	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:105450224G>A	uc004emf.1	+	4	1448	c.799G>A	c.(799-801)GCT>ACT	p.A267T	MUM1L1_uc004emg.1_Missense_Mutation_p.A267T	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	267										ovary(2)|pancreas(1)|skin(1)	4						AGAGACCCTGGCTGTTCCCTC	0.463													10	5					0	0	0.435327	0	0
RGAG1	57529	broad.mit.edu	37	X	109696473	109696473	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:109696473G>A	uc004eor.1	+	3	2874	c.2628G>A	c.(2626-2628)ATG>ATA	p.M876I	RGAG1_uc011msr.1_Missense_Mutation_p.M876I	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	876										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						CATCACAAATGATGCCCACAG	0.547													11	89					0	0	0.411799	0	0
TDGF3	6998	broad.mit.edu	37	X	109764525	109764525	+	RNA	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:109764525G>A	uc004eos.1	+	1		c.986G>A				NR_002718				Human (clone CR-3) teratocarcinoma-derived growth factor 3 (TDGF3) mRNA, complete cds.												0						CCCAGGAGGAGCCTGCAATTC	0.572													3	12					0	0	0.184627	0	0
ZCCHC16	340595	broad.mit.edu	37	X	111698178	111698178	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:111698178C>T	uc004epo.1	+	3	663	c.222C>T	c.(220-222)TTC>TTT	p.F74F		NM_001004308	NP_001004308	Q6ZR62	ZCH16_HUMAN	zinc finger, CCHC domain containing 16	74							nucleic acid binding|zinc ion binding			ovary(1)	1						GCTCAGAGTTCCTCACTCAGG	0.483													22	19					0	0	0.706142	0	0
UPF3B	65109	broad.mit.edu	37	X	118971941	118971941	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:118971941G>A	uc004erz.1	-	10	1158	c.1081C>T	c.(1081-1083)CGA>TGA	p.R361*	UPF3B_uc004esa.1_Nonsense_Mutation_p.R348*	NM_080632	NP_542199	Q9BZI7	REN3B_HUMAN	UPF3 regulator of nonsense transcripts homolog B	361	Sufficient for association with EJC core.				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation|termination of RNA polymerase II transcription	cytosol|exon-exon junction complex|nucleoplasm	mRNA binding|nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(2)|kidney(1)	3						TCTCTTTCTCGAAGTATGCGC	0.463													4	53					0	0	0.184627	0	0
CT47B1	643311	broad.mit.edu	37	X	120008801	120008801	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:120008801C>T	uc011muc.1	-	1	979	c.724G>A	c.(724-726)GAG>AAG	p.E242K		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	242											0						GCCGGTtcctctgtggcctcc	0.537													9	80					0	0	0.361761	0	0
ACTRT1	139741	broad.mit.edu	37	X	127185188	127185188	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:127185188G>A	uc004eum.2	-	1	1195	c.998C>T	c.(997-999)TCT>TTT	p.S333F		NM_138289	NP_612146	Q8TDG2	ACTT1_HUMAN	actin-related protein T1	333						cytoplasm|cytoskeleton				ovary(2)|central_nervous_system(2)|skin(1)	5						TCTATCAGGAGAAGCTGTGAT	0.527													4	32					0	0	0.184627	0	0
ACTRT1	139741	broad.mit.edu	37	X	127186097	127186097	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:127186097C>T	uc004eum.2	-	1	286	c.89G>A	c.(88-90)GGA>GAA	p.G30E		NM_138289	NP_612146	Q8TDG2	ACTT1_HUMAN	actin-related protein T1	30						cytoplasm|cytoskeleton				ovary(2)|central_nervous_system(2)|skin(1)	5						ATGGCGGGGTCCAATCTCTCC	0.448													17	15					0	0	0.557998	0	0
IGSF1	3547	broad.mit.edu	37	X	130409260	130409260	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:130409260C>T	uc004ewd.2	-	17	3423	c.3185G>A	c.(3184-3186)GGC>GAC	p.G1062D	IGSF1_uc004ewe.3_Missense_Mutation_p.G1056D|IGSF1_uc004ewf.2_Missense_Mutation_p.G1042D	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	1062	Extracellular (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						GGGGAGTAAGCCTGGAAGAAA	0.522													7	45					0	0	0.248553	0	0
SLC9A6	10479	broad.mit.edu	37	X	135092658	135092658	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:135092658G>A	uc004ezj.2	+	7	937	c.861G>A	c.(859-861)GCG>GCA	p.A287A	SLC9A6_uc004ezk.2_Silent_p.A319A|SLC9A6_uc011mvx.1_Silent_p.A267A	NM_006359	NP_006350	Q92581	SL9A6_HUMAN	solute carrier family 9 (sodium/hydrogen	287					regulation of pH	early endosome membrane|endoplasmic reticulum membrane|integral to membrane|microsome|plasma membrane|recycling endosome membrane	sodium:hydrogen antiporter activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					ATGTCACAGCGATGTTCAAGT	0.428													8	69					0	0	0.307466	0	0
BRS3	680	broad.mit.edu	37	X	135570657	135570657	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:135570657C>T	uc004ezv.1	+	1	533	c.384C>T	c.(382-384)CTC>CTT	p.L128L		NM_001727	NP_001718	P32247	BRS3_HUMAN	bombesin-like receptor 3	128	Helical; Name=3; (Potential).				adult feeding behavior|glucose metabolic process|regulation of blood pressure	integral to membrane|plasma membrane	bombesin receptor activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					TCATCCGGCTCACTTCTGTTG	0.443													5	73					0	0	0.184627	0	0
SPANXE	171489	broad.mit.edu	37	X	140785720	140785720	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:140785720C>T	uc004fbq.2	-	2	289	c.196G>A	c.(196-198)GAA>AAA	p.E66K		NM_145665	NP_663698	Q8TAD1	SPNXE_HUMAN	SPANX family, member E	66						cytoplasm|nucleus					0	Acute lymphoblastic leukemia(192;7.65e-05)					TTCACCAGTTCCTCTGGAGAT	0.458													5	118					0	0	0.184627	0	0
MAGEC3	139081	broad.mit.edu	37	X	140969393	140969393	+	Silent	SNP	C	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:140969393C>T	uc011mwp.1	+	4	720	c.720C>T	c.(718-720)TCC>TCT	p.S240S		NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	240	MAGE 1.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TTGGCATTTCCCTGACAGAAG	0.478													25	16					0	0	0.706142	0	0
MAGEC1	9947	broad.mit.edu	37	X	140996047	140996047	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:140996047G>A	uc004fbt.2	+	4	3143	c.2857G>A	c.(2857-2859)GCC>ACC	p.A953T	MAGEC1_uc010nsl.1_Missense_Mutation_p.A20T	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	953	MAGE.						protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CTTCAGGAAAGCCCGTGAGTT	0.463										HNSCC(15;0.026)			34	25					0	0	0.804634	0	0
AFF2	2334	broad.mit.edu	37	X	148037297	148037297	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:148037297G>A	uc004fcp.2	+	11	2201	c.1722G>A	c.(1720-1722)ACG>ACA	p.T574T	AFF2_uc004fcq.2_Silent_p.T564T|AFF2_uc004fcr.2_Silent_p.T535T|AFF2_uc011mxb.1_Silent_p.T539T|AFF2_uc004fcs.2_Silent_p.T541T|AFF2_uc011mxc.1_Silent_p.T215T	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	574					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					AAGTGAAGACGAATGCCAGTC	0.473													64	53					0	0	0.870114	0	0
GABRQ	55879	broad.mit.edu	37	X	151818907	151818907	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:151818907G>A	uc004ffp.1	+	7	785	c.765G>A	c.(763-765)CTG>CTA	p.L255L		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	255	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					ACATACGCCTGATACTGAAGT	0.517													16	147					0	0	0.575678	0	0
GAB3	139716	broad.mit.edu	37	X	153925421	153925421	+	Silent	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:153925421G>A	uc004fmj.1	-	7	1458	c.1410C>T	c.(1408-1410)ACC>ACT	p.T470T	GAB3_uc004fmk.1_Silent_p.T471T|GAB3_uc010nve.1_Silent_p.T471T|GAB3_uc004fml.1_Silent_p.T90T	NM_080612	NP_542179	Q8WWW8	GAB3_HUMAN	Gab3 protein isoform 2	470										ovary(1)	1	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					GCACAGTGCGGGTCCTGGTAA	0.522													7	45					0	0	0.335167	0	0
MPP1	4354	broad.mit.edu	37	X	154020553	154020553	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:154020553G>A	uc004fmp.1	-	2	225	c.110C>T	c.(109-111)TCG>TTG	p.S37L	MPP1_uc010nvg.1_Missense_Mutation_p.S37L|MPP1_uc011mzv.1_Missense_Mutation_p.S7L|MPP1_uc004fmq.1_5'UTR|MPP1_uc011mzw.1_Missense_Mutation_p.S37L|MPP1_uc010nvh.1_Intron	NM_002436	NP_002427	Q00013	EM55_HUMAN	palmitoylated membrane protein 1	37					regulation of neutrophil chemotaxis|signal transduction	integral to plasma membrane|membrane fraction|stereocilium	guanylate kinase activity|protein binding			ovary(2)|central_nervous_system(1)	3	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CAATGGATGCGATACAGCCTG	0.453													4	40					0	0	0.248553	0	0
CEP290	80184	broad.mit.edu	37	12	88449444	88449444	+	Frame_Shift_Del	DEL	T	-	-			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr12:88449444delT	uc001tar.2	-	50	7213	c.6869delA	c.(6868-6870)AATfs	p.N2290fs	CEP290_uc001taq.2_Frame_Shift_Del_p.N1350fs|uc001tas.2_Intron	NM_025114	NP_079390	O15078	CE290_HUMAN	centrosomal protein 290kDa	2290	Potential.				cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding			ovary(5)|breast(1)|pancreas(1)	7						AATGCTTTGATTTTTTTTGGC	0.299													3	5	---	---	---	---					
IL27	246778	broad.mit.edu	37	16	28511176	28511178	+	In_Frame_Del	DEL	CTC	-	-			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr16:28511176_28511178delCTC	uc002dqc.2	-	5	549_551	c.526_528delGAG	c.(526-528)GAGdel	p.E176del	uc010vct.1_Intron	NM_145659	NP_663634	Q8NEV9	IL27A_HUMAN	interleukin 27 precursor	176	Glu-rich.				inflammatory response|innate immune response|positive regulation of interferon-gamma biosynthetic process|regulation of defense response to virus|regulation of T cell proliferation|regulation of T-helper 1 cell differentiation	extracellular space	cytokine activity|interleukin-27 receptor binding				0						GCCCCTtcctctcctcctcctcc	0.547													2	4	---	---	---	---					
ZBTB7C	201501	broad.mit.edu	37	18	45555705	45555705	+	Frame_Shift_Del	DEL	C	-	-			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr18:45555705delC	uc002lda.2	-	2	1802	c.1786delG	c.(1786-1788)GCCfs	p.A596fs	ZBTB7C_uc002ldb.2_Frame_Shift_Del_p.A596fs|ZBTB7C_uc010dnu.2_Frame_Shift_Del_p.A605fs|ZBTB7C_uc010dnv.2_Frame_Shift_Del_p.A618fs|ZBTB7C_uc010dnw.2_Frame_Shift_Del_p.A596fs	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	596						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						AGGCCGGCGGCCCAAGGGTCG	0.736													2	4	---	---	---	---					
METTL8	79828	broad.mit.edu	37	2	172195817	172195846	+	In_Frame_Del	DEL	ACCAGAACTTTTCTCATAATGATTTTTTTC	-	-			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr2:172195817_172195846delACCAGAACTTTTCTCATAATGATTTTTTTC	uc010zdo.1	-	4	595_624	c.454_483delGAAAAAAATCATTATGAGAAAAGTTCTGGT	c.(454-483)GAAAAAAATCATTATGAGAAAAGTTCTGGTdel	p.EKNHYEKSSG152del	METTL8_uc002ugu.3_In_Frame_Del_p.EKNHYEKSSG152del|METTL8_uc002ugv.3_In_Frame_Del_p.EKNHYEKSSG152del|METTL8_uc002ugt.3_In_Frame_Del_p.EKNHYEKSSG152del|METTL8_uc002ugs.3_In_Frame_Del_p.EKNHYEKSSG102del|METTL8_uc010zdp.1_In_Frame_Del_p.EKNHYEKSSG107del	NM_024770	NP_079046	B3KW44	B3KW44_HUMAN	methyltransferase like 8	152_161							methyltransferase activity			ovary(1)	1						CTTCTGAAGAACCAGAACTTTTCTCATAATGATTTTTTTCATCAGGCACA	0.383													16	62	---	---	---	---					
PKD1L1	168507	broad.mit.edu	37	7	47832245	47832245	+	Frame_Shift_Del	DEL	A	-	-			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr7:47832245delA	uc003tny.1	-	56	8506	c.8506delT	c.(8506-8508)TCTfs	p.S2836fs	C7orf69_uc003tnz.3_5'Flank|C7orf69_uc003toa.1_5'Flank	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2836	Cytoplasmic (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TGGTAACTAGAAATGTCCACT	0.393													94	128	---	---	---	---					
ADAM2	2515	broad.mit.edu	37	8	39604019	39604020	+	Frame_Shift_Ins	INS	-	T	T			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:39604019_39604020insT	uc003xnj.2	-	19	2220_2221	c.2145_2146insA	c.(2143-2148)AAATGGfs	p.K715fs	ADAM2_uc003xnk.2_Frame_Shift_Ins_p.K696fs|ADAM2_uc011lck.1_Frame_Shift_Ins_p.K652fs|ADAM2_uc003xnl.2_Frame_Shift_Ins_p.K559fs	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	715_716	Cytoplasmic (Potential).				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		TCAGTTCTCCATTTTTTCCTTT	0.292													40	61	---	---	---	---					
CYP7B1	9420	broad.mit.edu	37	8	65509352	65509352	+	Frame_Shift_Del	DEL	A	-	-			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chr8:65509352delA	uc003xvj.2	-	6	1572	c.1368delT	c.(1366-1368)CTTfs	p.L456fs		NM_004820	NP_004811	O75881	CP7B1_HUMAN	cytochrome P450, family 7, subfamily B,	456					bile acid biosynthetic process|cell death|cholesterol metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	25-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(3)	3		all_cancers(86;0.217)|Lung NSC(129;0.0521)|all_lung(136;0.0906)|all_epithelial(80;0.215)				TTATTTCCATAAGTGCAAAAA	0.353													21	25	---	---	---	---					
VSIG1	340547	broad.mit.edu	37	X	107315930	107315930	+	Frame_Shift_Del	DEL	A	-	-			TCGA-D3-A3MV-06A-11D-A21A-08	TCGA-D3-A3MV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	60b65a17-69a7-4dd5-937c-8e047bb1cf93	0e31ab41-4ba6-48e1-9f2f-ee3f13ebcb19	g.chrX:107315930delA	uc004eno.2	+	4	597	c.436delA	c.(436-438)AGCfs	p.S146fs	VSIG1_uc011msk.1_Frame_Shift_Del_p.S182fs	NM_182607	NP_872413	Q86XK7	VSIG1_HUMAN	V-set and immunoglobulin domain containing 1	146	Extracellular (Potential).|Ig-like C2-type 2.					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2						GCCCCTTTGTAGCGTTCAAGG	0.443													39	56	---	---	---	---					
