Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CDK11B	984	broad.mit.edu	37	1	1573193	1573193	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:1573193G>A	uc001agv.1	-	17	1506	c.1395C>T	c.(1393-1395)TTC>TTT	p.F465F	CDK11B_uc009vkj.2_Silent_p.F122F|CDK11B_uc001ags.1_Silent_p.F323F|CDK11B_uc001agt.1_Silent_p.F248F|CDK11B_uc001aha.1_Silent_p.F431F|CDK11B_uc001agw.1_Silent_p.F420F|CDK11B_uc001agy.1_Silent_p.F463F|CDK11B_uc001agx.1_Silent_p.F454F|CDK11B_uc001agz.1_Silent_p.F209F	NM_033486	NP_277021	P21127	CD11B_HUMAN	cell division cycle 2-like 1 (PITSLRE proteins)	478	Protein kinase.				apoptosis|cell proliferation|mitosis|regulation of cell growth|regulation of mRNA processing|regulation of transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity|protein binding			skin(1)	1						ACGTGATCGGGAAGCCCTCCT	0.557													57	127					0	0	0.014410	0	0
PLCH2	9651	broad.mit.edu	37	1	2418730	2418730	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:2418730C>T	uc001aji.1	+	7	1303	c.1029C>T	c.(1027-1029)ACC>ACT	p.T343T	PLCH2_uc010nyz.1_Silent_p.T131T|PLCH2_uc009vle.1_Silent_p.T131T|PLCH2_uc001ajj.1_Silent_p.T131T|PLCH2_uc001ajk.1_Silent_p.T131T	NM_014638	NP_055453	O75038	PLCH2_HUMAN	phospholipase C, eta 2	343	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process	cytoplasm|plasma membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			central_nervous_system(3)|ovary(1)|skin(1)	5	all_cancers(77;0.000161)|all_epithelial(69;5.98e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;7.32e-16)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.44e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.78e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;4.19e-05)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00034)|BRCA - Breast invasive adenocarcinoma(365;0.00443)|KIRC - Kidney renal clear cell carcinoma(229;0.00548)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.2)		CCCACAACACCTACCTCGTGG	0.612													8	16					0	0	0.008291	0	0
ARHGEF16	27237	broad.mit.edu	37	1	3394464	3394464	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:3394464G>A	uc001akg.3	+	11	1747	c.1499G>A	c.(1498-1500)CGG>CAG	p.R500Q	ARHGEF16_uc001aki.2_Missense_Mutation_p.R212Q|ARHGEF16_uc001akj.2_Missense_Mutation_p.R212Q|ARHGEF16_uc010nzh.1_Missense_Mutation_p.R204Q	NM_014448	NP_055263	Q5VV41	ARHGG_HUMAN	Rho guanine exchange factor 16	500					activation of Cdc42 GTPase activity|activation of Rac GTPase activity|apoptosis|cell chemotaxis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|small GTPase mediated signal transduction	cytosol	PDZ domain binding|receptor tyrosine kinase binding|Rho GTPase binding|Rho guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(77;0.00276)|all_epithelial(69;0.00102)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.101)	all_epithelial(116;7.14e-21)|all_lung(118;2.24e-08)|Lung NSC(185;3.55e-06)|Breast(487;0.000765)|Renal(390;0.00121)|Hepatocellular(190;0.0046)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.211)		Epithelial(90;8.62e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.62e-22)|GBM - Glioblastoma multiforme(42;2.49e-12)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.000681)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		TCTGCCTCCCGGTGGCTGCTG	0.612													17	49					0	0	0.006122	0	0
CCDC27	148870	broad.mit.edu	37	1	3669103	3669103	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:3669103G>A	uc001akv.2	+	1	139	c.58G>A	c.(58-60)GAA>AAA	p.E20K		NM_152492	NP_689705	Q2M243	CCD27_HUMAN	coiled-coil domain containing 27	20										skin(1)	1	all_cancers(77;0.0385)|Ovarian(185;0.0634)|Lung NSC(156;0.21)|all_lung(157;0.218)	all_epithelial(116;5.52e-17)|all_lung(118;1.04e-06)|Lung NSC(185;0.000214)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Lung SC(97;0.0367)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)		Epithelial(90;1.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.35e-22)|GBM - Glioblastoma multiforme(42;3.46e-16)|Colorectal(212;1.17e-05)|COAD - Colon adenocarcinoma(227;5.76e-05)|Kidney(185;0.00036)|BRCA - Breast invasive adenocarcinoma(365;0.000696)|KIRC - Kidney renal clear cell carcinoma(229;0.00558)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		AGATCCACGGGAAAAGCCGGG	0.572													21	24					0	0	0.018920	0	0
KIAA0562	9731	broad.mit.edu	37	1	3742987	3742987	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:3742987C>T	uc001aky.2	-	17	2561	c.2202G>A	c.(2200-2202)GGG>GGA	p.G734G	KIAA0562_uc010nzm.1_RNA	NM_014704	NP_055519	O60308	CE104_HUMAN	glycine-, glutamate-,	734						centriole	binding				0	all_cancers(77;0.0395)|Ovarian(185;0.0634)|all_lung(157;0.222)|Lung NSC(156;0.227)	all_epithelial(116;3.96e-21)|all_lung(118;2.74e-08)|Lung NSC(185;6.4e-06)|Breast(487;0.00066)|Renal(390;0.00121)|Hepatocellular(190;0.00335)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.031)|Lung SC(97;0.0548)|Medulloblastoma(700;0.212)		Epithelial(90;6.85e-39)|OV - Ovarian serous cystadenocarcinoma(86;1.59e-22)|GBM - Glioblastoma multiforme(42;3.16e-16)|Colorectal(212;2.01e-05)|COAD - Colon adenocarcinoma(227;7.99e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000389)|Kidney(185;0.000513)|STAD - Stomach adenocarcinoma(132;0.00709)|KIRC - Kidney renal clear cell carcinoma(229;0.00714)|Lung(427;0.137)		GGGCTGCTTTCCCTCCTTGAA	0.378													17	45					0	0	0.006122	0	0
KIAA0562	9731	broad.mit.edu	37	1	3746408	3746408	+	Missense_Mutation	SNP	T	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:3746408T>A	uc001aky.2	-	14	2349	c.1990A>T	c.(1990-1992)ATT>TTT	p.I664F	KIAA0562_uc010nzm.1_RNA	NM_014704	NP_055519	O60308	CE104_HUMAN	glycine-, glutamate-,	664						centriole	binding				0	all_cancers(77;0.0395)|Ovarian(185;0.0634)|all_lung(157;0.222)|Lung NSC(156;0.227)	all_epithelial(116;3.96e-21)|all_lung(118;2.74e-08)|Lung NSC(185;6.4e-06)|Breast(487;0.00066)|Renal(390;0.00121)|Hepatocellular(190;0.00335)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.031)|Lung SC(97;0.0548)|Medulloblastoma(700;0.212)		Epithelial(90;6.85e-39)|OV - Ovarian serous cystadenocarcinoma(86;1.59e-22)|GBM - Glioblastoma multiforme(42;3.16e-16)|Colorectal(212;2.01e-05)|COAD - Colon adenocarcinoma(227;7.99e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000389)|Kidney(185;0.000513)|STAD - Stomach adenocarcinoma(132;0.00709)|KIRC - Kidney renal clear cell carcinoma(229;0.00714)|Lung(427;0.137)		CCCTCAAAAATTGTTTTGTAG	0.438													46	119					0	0	0.014410	0	0
KCNAB2	8514	broad.mit.edu	37	1	6158556	6158556	+	Silent	SNP	A	G	G	rs148138812	byFrequency	TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:6158556A>G	uc009vlv.1	+	16	1161	c.1026A>G	c.(1024-1026)AAA>AAG	p.K342K	KCNAB2_uc001alv.1_Silent_p.K342K|KCNAB2_uc001alw.1_Silent_p.K328K|KCNAB2_uc001alx.1_Silent_p.K342K|KCNAB2_uc001aly.1_Silent_p.K390K|KCNAB2_uc009vlw.1_Silent_p.K275K|KCNAB2_uc001alu.2_3'UTR	NM_003636	NP_003627	Q13303	KCAB2_HUMAN	potassium voltage-gated channel, shaker-related	342						cytoplasm|integral to membrane|juxtaparanode region of axon	oxidoreductase activity|potassium channel regulator activity|voltage-gated potassium channel activity				0	Ovarian(185;0.0634)	all_cancers(23;5.85e-39)|all_epithelial(116;4.88e-22)|all_lung(118;4.21e-08)|Lung NSC(185;9.77e-07)|all_hematologic(16;2.78e-06)|all_neural(13;3.18e-06)|Acute lymphoblastic leukemia(12;0.000272)|Breast(487;0.000496)|Renal(390;0.0007)|Colorectal(325;0.00106)|Glioma(11;0.00203)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0393)|Medulloblastoma(700;0.211)		Epithelial(90;6.9e-37)|GBM - Glioblastoma multiforme(13;8.8e-31)|OV - Ovarian serous cystadenocarcinoma(86;1.45e-19)|Colorectal(212;2.46e-07)|COAD - Colon adenocarcinoma(227;2.07e-05)|Kidney(185;7.88e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00131)|BRCA - Breast invasive adenocarcinoma(365;0.00133)|STAD - Stomach adenocarcinoma(132;0.00391)|READ - Rectum adenocarcinoma(331;0.0649)		TCCTTCCGAAACTGTCATCTT	0.537													9	35					0	0	0.008291	0	0
CHD5	26038	broad.mit.edu	37	1	6206416	6206417	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:6206416_6206417GG>AA	uc001amb.1	-	11	1757_1758	c.1657_1658CC>TT	c.(1657-1659)CCC>TTC	p.P553F	CHD5_uc001ama.1_5'Flank|CHD5_uc001amc.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	553	Chromo 1.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		GTAGTCAAAGGGGGGCGGCTCA	0.554													27	40					0	0	0.004672	0	0
ESPN	83715	broad.mit.edu	37	1	6505809	6505809	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:6505809G>A	uc001amy.2	+	7	1446	c.1278G>A	c.(1276-1278)GGG>GGA	p.G426G	ESPN_uc001amz.2_5'Flank	NM_031475	NP_113663	B1AK53	ESPN_HUMAN	espin	426					sensory perception of sound	brush border|cytoplasm|filamentous actin|stereocilium	actin filament binding|SH3 domain binding				0	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;3.6e-37)|all_epithelial(116;2.56e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|all_hematologic(16;6.92e-06)|Colorectal(325;4.47e-05)|Acute lymphoblastic leukemia(12;4.92e-05)|Breast(487;7.61e-05)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)		Epithelial(90;1.82e-35)|GBM - Glioblastoma multiforme(13;3e-28)|Kidney(185;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(229;5.63e-08)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;1.41e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000109)|STAD - Stomach adenocarcinoma(132;0.00167)|Lung(427;0.0108)|LUSC - Lung squamous cell carcinoma(448;0.0253)|READ - Rectum adenocarcinoma(331;0.0419)		GCACGATTGGGAAGcccacac	0.383													8	12					0	0	0.003080	0	0
H6PD	9563	broad.mit.edu	37	1	9324817	9324817	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:9324817C>T	uc001apt.2	+	5	2538	c.2265C>T	c.(2263-2265)ACC>ACT	p.T755T		NM_004285	NP_004276	O95479	G6PE_HUMAN	hexose-6-phosphate dehydrogenase precursor	755	6-phosphogluconolactonase.					endoplasmic reticulum lumen	6-phosphogluconolactonase activity|glucose 1-dehydrogenase|glucose-6-phosphate dehydrogenase activity|NADP binding				0	all_lung(157;0.23)	all_epithelial(116;1.28e-19)|all_lung(118;5.22e-06)|Lung NSC(185;1.98e-05)|Renal(390;0.000147)|Breast(348;0.00109)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.88e-07)|COAD - Colon adenocarcinoma(227;7.47e-05)|Kidney(185;0.000244)|KIRC - Kidney renal clear cell carcinoma(229;0.000905)|STAD - Stomach adenocarcinoma(132;0.00176)|BRCA - Breast invasive adenocarcinoma(304;0.00183)|READ - Rectum adenocarcinoma(331;0.0419)	NADH(DB00157)	GTGAGATCACCACGCTGGTGA	0.642													8	30					0	0	0.010729	0	0
KIF1B	23095	broad.mit.edu	37	1	10434391	10434391	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:10434391C>T	uc001aqx.3	+	46	5166	c.4964C>T	c.(4963-4965)TCC>TTC	p.S1655F	KIF1B_uc001aqw.3_Missense_Mutation_p.S1609F|KIF1B_uc001aqy.2_Missense_Mutation_p.S1629F|KIF1B_uc001aqz.2_Missense_Mutation_p.S1655F|KIF1B_uc001ara.2_Missense_Mutation_p.S1615F|KIF1B_uc001arb.2_Missense_Mutation_p.S1641F	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	1655					anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		GAAGCCAATTCCCGGGCCTCT	0.433													67	237					0	0	0.014410	0	0
MASP2	10747	broad.mit.edu	37	1	11090804	11090804	+	Splice_Site	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:11090804C>T	uc001aru.2	-	9	1243	c.1222_splice	c.e9+1	p.G408_splice		NM_006610	NP_006601	O00187	MASP2_HUMAN	mannan-binding lectin serine protease 2 isoform						complement activation, classical pathway|complement activation, lectin pathway|proteolysis	extracellular region	calcium ion binding|calcium-dependent protein binding|serine-type endopeptidase activity			ovary(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.249)	Lung NSC(185;1.04e-05)|all_lung(284;1.31e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.071)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.12e-07)|COAD - Colon adenocarcinoma(227;7.07e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|Kidney(185;0.000722)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|READ - Rectum adenocarcinoma(331;0.0487)|STAD - Stomach adenocarcinoma(313;0.192)		AATTTGCATACCATCATTCAC	0.448													5	30					0	0	0.001984	0	0
LOC649330	649330	broad.mit.edu	37	1	12907419	12907419	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:12907419C>T	uc009vno.2	-	1	819	c.724G>A	c.(724-726)GGG>AGG	p.G242R	HNRNPCL1_uc010obf.1_Missense_Mutation_p.G242R	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	242							nucleic acid binding|nucleotide binding				0						TCTGCACCCCCCTCAGACTCC	0.483													33	116					0	0	0.015359	0	0
LOC649330	649330	broad.mit.edu	37	1	12907865	12907865	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:12907865C>T	uc009vno.2	-	1	373	c.278G>A	c.(277-279)GGA>GAA	p.G93E	HNRNPCL1_uc010obf.1_Missense_Mutation_p.G93E	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	93							nucleic acid binding|nucleotide binding				0						ACCTGCGTTTCCTCGGTTCAC	0.483													13	95					0	0	0.003163	0	0
LOC440563	440563	broad.mit.edu	37	1	13183269	13183269	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:13183269C>T	uc010obg.1	-	1	699	c.604G>A	c.(604-606)GAA>AAA	p.E202K		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	202						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						TCAATTTTTTCCAGGTTTTCC	0.428													29	186					0	0	0.010818	0	0
PRAMEF18	391003	broad.mit.edu	37	1	13475031	13475031	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:13475031G>A	uc009vnu.1	-	3	1145	c.1098C>T	c.(1096-1098)CTC>CTT	p.L366L		NM_001099850	NP_001093320	Q5VWM3	PRA18_HUMAN	PRAME family member 18	366											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GGATGACCCTGAGTTTGGAGT	0.572													105	278					0	0	0.014410	0	0
FBXO42	54455	broad.mit.edu	37	1	16577615	16577615	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:16577615G>A	uc001ayg.2	-	10	1920	c.1704C>T	c.(1702-1704)TCC>TCT	p.S568S	FBXO42_uc001aye.3_Silent_p.S286S|FBXO42_uc001ayf.2_Silent_p.S475S	NM_018994	NP_061867	Q6P3S6	FBX42_HUMAN	F-box protein 42	568										upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00475)|all_lung(284;0.00671)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0193)|Colorectal(212;3.16e-07)|COAD - Colon adenocarcinoma(227;1.46e-05)|BRCA - Breast invasive adenocarcinoma(304;4.37e-05)|Kidney(64;0.000246)|KIRC - Kidney renal clear cell carcinoma(64;0.00336)|STAD - Stomach adenocarcinoma(313;0.0139)|READ - Rectum adenocarcinoma(331;0.0693)		AGGGGCCTTTGGAGGACATCG	0.617													24	41					0	0	0.016522	0	0
ARHGEF10L	55160	broad.mit.edu	37	1	18014191	18014191	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:18014191G>A	uc001ban.2	+	27	3292	c.3133G>A	c.(3133-3135)GAG>AAG	p.E1045K	ARHGEF10L_uc009vpe.1_Missense_Mutation_p.E1006K|ARHGEF10L_uc001bao.2_Missense_Mutation_p.E1006K|ARHGEF10L_uc001bap.2_Missense_Mutation_p.E1001K|ARHGEF10L_uc001baq.2_Missense_Mutation_p.E806K|ARHGEF10L_uc010ocs.1_Missense_Mutation_p.E818K|ARHGEF10L_uc001bar.2_Missense_Mutation_p.E748K|ARHGEF10L_uc009vpf.2_RNA	NM_018125	NP_060595	Q9HCE6	ARGAL_HUMAN	Rho guanine nucleotide exchange factor (GEF)	1045					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|ovary(1)|pancreas(1)	3		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00598)|COAD - Colon adenocarcinoma(227;1.62e-05)|BRCA - Breast invasive adenocarcinoma(304;1.68e-05)|Kidney(64;0.000269)|KIRC - Kidney renal clear cell carcinoma(64;0.00361)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0718)|Lung(427;0.204)		TGAGACCCTGGAGCATCTGCA	0.642													5	32					0	0	0.014758	0	0
IGSF21	84966	broad.mit.edu	37	1	18661492	18661492	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:18661492C>T	uc001bau.1	+	4	795	c.412C>T	c.(412-414)CTC>TTC	p.L138F		NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	138						extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		CAACATCTTCCTCAACGTCAT	0.587													8	28					0	0	0.008291	0	0
IGSF21	84966	broad.mit.edu	37	1	18702874	18702874	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:18702874G>A	uc001bau.1	+	7	1469	c.1086G>A	c.(1084-1086)CTG>CTA	p.L362L	IGSF21_uc001bav.1_Silent_p.L183L	NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	362	Ig-like 2.					extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		TGAGGATTCTGGTCCATGGGT	0.592													49	100					0	0	0.014410	0	0
ALDH4A1	8659	broad.mit.edu	37	1	19204081	19204081	+	Silent	SNP	G	A	A	rs150927009		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:19204081G>A	uc001bbb.2	-	10	1242	c.966C>T	c.(964-966)TTC>TTT	p.F322F	ALDH4A1_uc010ocu.1_Silent_p.F262F|ALDH4A1_uc001bbc.2_Silent_p.F322F	NM_170726	NP_733844	P30038	AL4A1_HUMAN	aldehyde dehydrogenase 4A1 isoform a precursor	322					proline biosynthetic process|proline catabolic process	mitochondrial matrix	1-pyrroline-5-carboxylate dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|electron carrier activity				0		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00479)|BRCA - Breast invasive adenocarcinoma(304;3.67e-05)|Kidney(64;0.000182)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	NADH(DB00157)	AGCGGTGCACGAAGTGGAAGT	0.657													4	32					0	0	0.009096	0	0
TMCO4	255104	broad.mit.edu	37	1	20072116	20072116	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:20072116G>A	uc001bcn.2	-	10	1028	c.786C>T	c.(784-786)GCC>GCT	p.A262A	TMCO4_uc001bcm.2_Intron|TMCO4_uc001bco.1_Silent_p.A262A|TMCO4_uc001bcp.1_Intron|TMCO4_uc009vpn.1_Silent_p.A262A|TMCO4_uc001bcq.1_Silent_p.A262A	NM_181719	NP_859070	Q5TGY1	TMCO4_HUMAN	transmembrane and coiled-coil domains 4	262						integral to membrane					0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00519)|Breast(348;0.00526)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00708)|COAD - Colon adenocarcinoma(152;2.28e-05)|BRCA - Breast invasive adenocarcinoma(304;5.8e-05)|Kidney(64;0.000367)|GBM - Glioblastoma multiforme(114;0.000377)|KIRC - Kidney renal clear cell carcinoma(64;0.00459)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0862)|Lung(427;0.223)		ACTCTTCAATGGCTCCCACTC	0.567													43	121					0	0	0.007835	0	0
HSPG2	3339	broad.mit.edu	37	1	22203098	22203098	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:22203098G>A	uc001bfj.2	-	22	2773	c.2733C>T	c.(2731-2733)TTC>TTT	p.F911F	HSPG2_uc009vqd.2_Silent_p.F912F	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	911	Laminin EGF-like 4; truncated.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	TACTCAGGTGGAAAGAGCCGT	0.592													11	25					0	0	0.008291	0	0
COL16A1	1307	broad.mit.edu	37	1	32126196	32126196	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:32126196G>A	uc001btk.1	-	62	4234	c.3869C>T	c.(3868-3870)CCG>CTG	p.P1290L	COL16A1_uc001bti.1_5'UTR|COL16A1_uc001btj.1_Missense_Mutation_p.P1088L	NM_001856	NP_001847	Q07092	COGA1_HUMAN	alpha 1 type XVI collagen precursor	1290	Triple-helical region 2 (COL2) with 2 imperfections.				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			ovary(8)	8		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		AACGTGTCCCGGGGGACCGGG	0.527													35	74					0	0	0.014410	0	0
COL16A1	1307	broad.mit.edu	37	1	32157113	32157113	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:32157113C>T	uc001btk.1	-	19	1668	c.1303G>A	c.(1303-1305)GGA>AGA	p.G435R	COL16A1_uc001btj.1_Missense_Mutation_p.G264R|COL16A1_uc001btl.3_Missense_Mutation_p.G435R	NM_001856	NP_001847	Q07092	COGA1_HUMAN	alpha 1 type XVI collagen precursor	435	Triple-helical region 9 (COL9) with 3 imperfections.				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			ovary(8)	8		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		CCAGGGTCTCCCTGGCACAGA	0.662													8	37					0	0	0.004482	0	0
KHDRBS1	10657	broad.mit.edu	37	1	32502640	32502640	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:32502640C>T	uc001bub.2	+	5	1007	c.901C>T	c.(901-903)CCC>TCC	p.P301S	KHDRBS1_uc001bua.1_Missense_Mutation_p.P262S|KHDRBS1_uc001buc.1_RNA	NM_006559	NP_006550	Q07666	KHDR1_HUMAN	KH domain containing, RNA binding, signal	301	Pro-rich.				cell cycle arrest|cell proliferation|cell surface receptor linked signaling pathway|G2/M transition of mitotic cell cycle|mRNA processing|negative regulation of transcription, DNA-dependent|regulation of RNA export from nucleus|transcription, DNA-dependent	membrane|nucleus	DNA binding|RNA binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(1)	1		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				ACCACCTGTTCCCAGGTAAAA	0.493													20	65					0	0	0.014323	0	0
ZBTB8A	653121	broad.mit.edu	37	1	33060732	33060732	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:33060732C>T	uc001bvn.2	+	4	1386	c.901C>T	c.(901-903)CTT>TTT	p.L301F	ZBTB8A_uc001bvk.2_RNA|ZBTB8A_uc001bvm.2_Missense_Mutation_p.L301F	NM_001040441	NP_001035531	Q96BR9	ZBT8A_HUMAN	zinc finger and BTB domain containing 8A	301	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAAGCGCCACCTTCGTTGTCA	0.468													15	62					0	0	0.003163	0	0
KIAA0319L	79932	broad.mit.edu	37	1	35906721	35906721	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:35906721C>T	uc001byx.2	-	20	3147	c.2889G>A	c.(2887-2889)AAG>AAA	p.K963K	KIAA0319L_uc001byw.2_Silent_p.K405K|KIAA0319L_uc010ohv.1_Silent_p.K605K	NM_024874	NP_079150	Q8IZA0	K319L_HUMAN	dyslexia susceptibility 2-like	963	Cytoplasmic (Potential).					cytoplasmic vesicle part|integral to membrane	protein binding			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TGCTTTTCCTCTTGGGTTTTC	0.552													22	113					0	0	0.006320	0	0
CTPS	1503	broad.mit.edu	37	1	41467908	41467908	+	Missense_Mutation	SNP	C	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:41467908C>A	uc001cgk.3	+	11	1679	c.1171C>A	c.(1171-1173)CAG>AAG	p.Q391K	CTPS_uc010ojo.1_Missense_Mutation_p.Q160K|CTPS_uc001cgl.3_Missense_Mutation_p.Q391K|CTPS_uc010ojq.1_Missense_Mutation_p.Q235K|CTPS_uc009vwe.2_Missense_Mutation_p.Q111K	NM_001905	NP_001896	P17812	PYRG1_HUMAN	CTP synthase	391	Glutamine amidotransferase type-1.				CTP biosynthetic process|glutamine metabolic process|nucleobase, nucleoside and nucleotide interconversion|response to drug	cytosol	ATP binding|CTP synthase activity|protein binding				0	Ovarian(52;0.00579)|all_hematologic(146;0.0977)|Breast(333;0.1)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0255)			L-Glutamine(DB00130)	GGCTCGGAATCAGAAAAAGCC	0.478													28	86					6.07407e-21	6.35827e-21	0.007291	1	0
C1orf210	149466	broad.mit.edu	37	1	43748742	43748742	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:43748742G>A	uc001cit.3	-	3	290	c.56C>T	c.(55-57)GCT>GTT	p.A19V		NM_182517	NP_872323	Q8IVY1	CA210_HUMAN	hypothetical protein LOC149466	19	Extracellular (Potential).					integral to membrane					0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				AGGGGCCACAGCAGACGCTGT	0.637													15	24					0	0	0.004007	0	0
TIE1	7075	broad.mit.edu	37	1	43775076	43775076	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:43775076G>A	uc001ciu.2	+	9	1285	c.1206G>A	c.(1204-1206)GTG>GTA	p.V402V	TIE1_uc010okd.1_Silent_p.V402V|TIE1_uc010oke.1_Silent_p.V357V|TIE1_uc009vwq.2_Silent_p.V358V|TIE1_uc010okf.1_Silent_p.V47V|TIE1_uc010okg.1_Silent_p.V47V|TIE1_uc010okc.1_Missense_Mutation_p.G311R	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	402	Ig-like C2-type 2.|Extracellular (Potential).				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				AGGCCATTGTGGAGCCAGAGA	0.607													18	52					0	0	0.007413	0	0
CYP4B1	1580	broad.mit.edu	37	1	47264785	47264785	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:47264785C>T	uc001cqm.3	+	1	116	c.32C>T	c.(31-33)TCC>TTC	p.S11F	CYP4B1_uc009vyl.1_5'UTR|CYP4B1_uc001cqn.3_Missense_Mutation_p.S11F|CYP4B1_uc009vym.2_Missense_Mutation_p.S11F|CYP4B1_uc010omk.1_5'UTR	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	11					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					CTGAGCTTCTCCTCCTTGGGC	0.567													6	11					0	0	0.001168	0	0
CYP4A22	284541	broad.mit.edu	37	1	47610372	47610372	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:47610372G>A	uc001cqv.1	+	8	1099	c.1048G>A	c.(1048-1050)GAG>AAG	p.E350K	CYP4A22_uc009vyo.2_Missense_Mutation_p.E350K|CYP4A22_uc009vyp.2_Intron	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	350						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						GTGCCGGGAGGAGATCCATGG	0.612													20	46					0	0	0.014323	0	0
SLC1A7	6512	broad.mit.edu	37	1	53558435	53558435	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:53558435G>A	uc001cuy.2	-	7	990	c.822C>T	c.(820-822)TTC>TTT	p.F274F	SLC1A7_uc001cux.2_5'Flank	NM_006671	NP_006662	O00341	EAA5_HUMAN	solute carrier family 1 (glutamate transporter),	274	Helical; (Potential).					integral to membrane|plasma membrane	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|large_intestine(1)	3				Colorectal(1306;0.234)	L-Glutamic Acid(DB00142)	CCGCAATGAGGAACACAATGC	0.667													23	63					0	0	0.018920	0	0
PRKAA2	5563	broad.mit.edu	37	1	57169687	57169687	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:57169687C>T	uc001cyk.3	+	7	903	c.832C>T	c.(832-834)CCT>TCT	p.P278S		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	278					carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						TTACTTATTTCCTGAAGACCC	0.353													31	107					0	0	0.009535	0	0
C1orf168	199920	broad.mit.edu	37	1	57209936	57209936	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:57209936C>T	uc001cym.3	-	10	1797	c.1391G>A	c.(1390-1392)GGG>GAG	p.G464E	C1orf168_uc009vzu.1_RNA|C1orf168_uc001cyl.2_RNA	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	464										ovary(3)|skin(2)	5						CTCCAGATGCCCACCTGAAAG	0.448													3	9					0	0	0.004672	0	0
DAB1	1600	broad.mit.edu	37	1	57537993	57537993	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:57537993C>T	uc001cys.1	-	7	1075	c.401G>A	c.(400-402)GGG>GAG	p.G134E	DAB1_uc001cyt.1_Missense_Mutation_p.G134E|DAB1_uc001cyq.1_Missense_Mutation_p.G134E|DAB1_uc001cyr.1_Intron|DAB1_uc009vzw.1_Missense_Mutation_p.G134E|DAB1_uc009vzx.1_Missense_Mutation_p.G134E	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	134	PID.				cell differentiation|nervous system development					skin(2)|ovary(1)	3						TCTGTGATTCCCTTCCTTCCC	0.478													8	28					0	0	0.008291	0	0
C1orf87	127795	broad.mit.edu	37	1	60466815	60466815	+	Missense_Mutation	SNP	C	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:60466815C>G	uc001czs.1	-	10	1298	c.1206G>C	c.(1204-1206)AAG>AAC	p.K402N	C1orf87_uc001czr.1_5'UTR	NM_152377	NP_689590	Q8N0U7	CA087_HUMAN	hypothetical protein LOC127795	402							calcium ion binding			ovary(1)|breast(1)	2						CAGGGGCTTTCTTTTCATTCT	0.428													3	7					0	0	0.004672	0	0
EFCAB7	84455	broad.mit.edu	37	1	63997598	63997598	+	Missense_Mutation	SNP	G	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:63997598G>C	uc001dbf.2	+	3	589	c.295G>C	c.(295-297)GAA>CAA	p.E99Q		NM_032437	NP_115813	A8K855	EFCB7_HUMAN	EF-hand calcium binding domain 7	99							calcium ion binding				0						TTTAAGGAAGGAAAAACCTAC	0.313													7	18					0	0	0.003080	0	0
NEGR1	257194	broad.mit.edu	37	1	72058606	72058606	+	Silent	SNP	T	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:72058606T>G	uc001dfw.2	-	6	934	c.834A>C	c.(832-834)ACA>ACC	p.T278T	NEGR1_uc001dfv.2_Silent_p.T150T|NEGR1_uc010oqs.1_Silent_p.T234T	NM_173808	NP_776169	Q7Z3B1	NEGR1_HUMAN	neuronal growth regulator 1 precursor	278	Ig-like C2-type 3.				cell adhesion	anchored to membrane|plasma membrane				ovary(1)	1		all_cancers(4;1.26e-06)|Renal(4;1.32e-08)|all_epithelial(4;5.39e-07)|Hepatocellular(141;0.117)		KIRC - Kidney renal clear cell carcinoma(4;0.00529)|Kidney(4;0.00609)|all cancers(265;0.022)|GBM - Glioblastoma multiforme(62;0.0382)|Epithelial(280;0.242)		GAATGGATCTTGTGCTAAAAT	0.413													5	22					0	0	0.001168	0	0
C1orf173	127254	broad.mit.edu	37	1	75037636	75037636	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:75037636C>T	uc001dgg.2	-	14	3977	c.3758G>A	c.(3757-3759)GGA>GAA	p.G1253E		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1253	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CCCCTCCAGTCCTGCGCAGGA	0.592													24	67					0	0	0.016522	0	0
C1orf173	127254	broad.mit.edu	37	1	75078373	75078373	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:75078373G>A	uc001dgg.2	-	9	1340	c.1121C>T	c.(1120-1122)TCC>TTC	p.S374F	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.S168F	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	374										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TCCAAGCCTGGAACCTTTCCG	0.463													12	29					0	0	0.016723	0	0
ST6GALNAC5	81849	broad.mit.edu	37	1	77528660	77528660	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:77528660G>A	uc001dhi.2	+	5	955	c.780G>A	c.(778-780)AGG>AGA	p.R260R	ST6GALNAC5_uc010ori.1_3'UTR|ST6GALNAC5_uc009wbw.2_RNA|ST6GALNAC5_uc001dhj.2_5'Flank	NM_030965	NP_112227	Q9BVH7	SIA7E_HUMAN	sialyltransferase 7E	260	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			pancreas(1)|skin(1)	2						CCTCCTACAGGGATCCCAATC	0.368													6	23					0	0	0.001984	0	0
USP33	23032	broad.mit.edu	37	1	78177436	78177436	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:78177436A>T	uc001dht.2	-	22	2842	c.2495T>A	c.(2494-2496)ATT>AAT	p.I832N	USP33_uc001dhs.2_Missense_Mutation_p.I553N|USP33_uc001dhu.2_Missense_Mutation_p.I801N|USP33_uc001dhv.2_Missense_Mutation_p.I637N|USP33_uc001dhw.2_Missense_Mutation_p.I824N	NM_015017	NP_055832	Q8TEY7	UBP33_HUMAN	ubiquitin specific protease 33 isoform 1	832	DUSP 2.				axon guidance|cell migration|endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm|VCB complex	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(2)|ovary(1)	3						TTTTACCCGAATAAAAATTTC	0.323													12	46					0	0	0.016723	0	0
RBMXL1	494115	broad.mit.edu	37	1	89448887	89448887	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:89448887G>A	uc009wcx.2	-	3	1339	c.623C>T	c.(622-624)TCC>TTC	p.S208F	CCBL2_uc001dmp.2_Intron|CCBL2_uc001dmq.2_Intron|CCBL2_uc001dmr.2_Intron|RBMXL1_uc001dms.2_Missense_Mutation_p.S208F	NM_001162536	NP_001156008	Q96E39	RBMXL_HUMAN	RNA binding motif protein, X-linked-like 1	208							nucleotide binding|RNA binding				0						ATCTCTTGGGGACAAATAAAC	0.463													36	124					0	0	0.007835	0	0
HFM1	164045	broad.mit.edu	37	1	91850744	91850744	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:91850744G>A	uc001doa.3	-	6	902	c.802C>T	c.(802-804)CCG>TCG	p.P268S	HFM1_uc010osu.1_Intron|HFM1_uc010osv.1_Intron|HFM1_uc001doc.1_Missense_Mutation_p.P268S	NM_001017975	NP_001017975	A2PYH4	HFM1_HUMAN	HFM1 protein	268							ATP binding|ATP-dependent helicase activity|nucleic acid binding				0		all_lung(203;0.00961)|Lung NSC(277;0.0351)		all cancers(265;0.000481)|Epithelial(280;0.00863)|OV - Ovarian serous cystadenocarcinoma(397;0.126)|KIRC - Kidney renal clear cell carcinoma(1967;0.171)		TAAAGGATACGAATTTCTGTG	0.244													5	5					0	0	0.003080	0	0
CDC7	8317	broad.mit.edu	37	1	91967356	91967356	+	Nonsense_Mutation	SNP	T	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:91967356T>A	uc001doe.2	+	2	248	c.83T>A	c.(82-84)TTA>TAA	p.L28*	CDC7_uc001dof.2_Nonsense_Mutation_p.L28*|CDC7_uc010osw.1_Nonsense_Mutation_p.L28*|CDC7_uc009wdc.2_Nonsense_Mutation_p.L28*	NM_003503	NP_003494	O00311	CDC7_HUMAN	cell division cycle 7	28					cell cycle checkpoint|cell division|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|positive regulation of cell proliferation|regulation of S phase	cytoplasm|nucleoplasm	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	5		all_lung(203;0.0165)|Lung NSC(277;0.0562)		all cancers(265;0.00108)|Epithelial(280;0.0184)|KIRC - Kidney renal clear cell carcinoma(1967;0.124)		GAAGGCTCTTTAAAAAAAAAC	0.403													5	142					0	0	0.014758	0	0
DPYD	1806	broad.mit.edu	37	1	97839184	97839184	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:97839184G>A	uc001drv.2	-	16	2128	c.1991C>T	c.(1990-1992)GCC>GTC	p.A664V		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	664	Uracil binding (Potential).				'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TAACTCCAGGGCATCTGCTCC	0.433													7	24					0	0	0.001984	0	0
RTCD1	8634	broad.mit.edu	37	1	100731969	100731969	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:100731969T>C	uc001dtc.2	+	1	256	c.38T>C	c.(37-39)ATG>ACG	p.M13T	RTCD1_uc010ouh.1_Missense_Mutation_p.M13T|RTCD1_uc001dtd.2_Missense_Mutation_p.M13T	NM_003729	NP_003720	O00442	RTC1_HUMAN	RNA terminal phosphate cyclase domain 1 isoform	13					RNA processing	mitochondrion|nucleoplasm	ATP binding|protein binding|RNA binding|RNA-3'-phosphate cyclase activity				0		all_epithelial(167;0.000686)|all_lung(203;0.0154)|Lung NSC(277;0.0155)		Epithelial(280;0.0513)|all cancers(265;0.0902)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)		GGCAGCATCATGGAAGGGGTG	0.652													25	54					0	0	0.009535	0	0
VCAM1	7412	broad.mit.edu	37	1	101186267	101186267	+	Silent	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:101186267A>G	uc001dti.2	+	2	420	c.300A>G	c.(298-300)GAA>GAG	p.E100E	VCAM1_uc001dtj.2_Silent_p.E100E|VCAM1_uc010ouj.1_Intron	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	100	Ig-like C2-type 1.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	CAACTTGTGAATCTAGGAAAT	0.383													7	7					0	0	0.001984	0	0
COL11A1	1301	broad.mit.edu	37	1	103343594	103343594	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:103343594G>A	uc001dul.2	-	67	5720	c.5402C>T	c.(5401-5403)CCT>CTT	p.P1801L	COL11A1_uc001duk.2_Missense_Mutation_p.P997L|COL11A1_uc001dum.2_Missense_Mutation_p.P1813L|COL11A1_uc001dun.2_Missense_Mutation_p.P1762L|COL11A1_uc009weh.2_Missense_Mutation_p.P1685L	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1801	Fibrillar collagen NC1.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		AAAACAAACAGGACCAACTTC	0.353													13	24					0	0	0.003163	0	0
KCNA3	3738	broad.mit.edu	37	1	111216243	111216243	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:111216243C>T	uc001dzv.1	-	1	1413	c.1189G>A	c.(1189-1191)GAG>AAG	p.E397K		NM_002232	NP_002223	P22001	KCNA3_HUMAN	potassium voltage-gated channel, shaker-related	397						voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(4)|pancreas(1)	5		all_cancers(81;3.92e-06)|all_epithelial(167;1.28e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0235)|Colorectal(144;0.0306)|all cancers(265;0.0752)|Epithelial(280;0.0821)|COAD - Colon adenocarcinoma(174;0.132)|LUSC - Lung squamous cell carcinoma(189;0.133)		AATCCCAGCTCCCGCATGGAC	0.582													25	67					0	0	0.018920	0	0
ADORA3	140	broad.mit.edu	37	1	112043112	112043112	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:112043112G>A	uc001ebh.3	-	2	1184	c.417C>T	c.(415-417)TTC>TTT	p.F139F	ADORA3_uc001ebg.3_Intron|ADORA3_uc001ebf.2_Intron	NM_000677	NP_000668	P33765	AA3R_HUMAN	adenosine A3 receptor isoform 2	139	Helical; Name=4; (By similarity).				activation of adenylate cyclase activity|inflammatory response|regulation of heart contraction	integral to plasma membrane	adenosine receptor activity, G-protein coupled			ovary(2)|large_intestine(1)|skin(1)	4		all_cancers(81;1.63e-06)|all_epithelial(167;5.01e-06)|all_lung(203;8.02e-05)|Lung NSC(277;0.000156)		all cancers(265;0.0185)|Colorectal(144;0.0186)|Lung(183;0.0238)|COAD - Colon adenocarcinoma(174;0.0644)|Epithelial(280;0.0872)|LUSC - Lung squamous cell carcinoma(189;0.134)	Adenosine(DB00640)|Aminophylline(DB01223)	ATCCCACCAGGAATGACACCA	0.498													26	90					0	0	0.021523	0	0
AMPD1	270	broad.mit.edu	37	1	115229518	115229518	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:115229518G>A	uc001efe.1	-	4	313	c.229C>T	c.(229-231)CAA>TAA	p.Q77*	AMPD1_uc001eff.1_Nonsense_Mutation_p.Q73*	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	77					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	TTCCGTCCTTGGAAACGCTTT	0.358													13	46					0	0	0.003163	0	0
IGSF3	3321	broad.mit.edu	37	1	117150580	117150580	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:117150580G>A	uc001egr.1	-	5	1911	c.1206C>T	c.(1204-1206)ATC>ATT	p.I402I	IGSF3_uc001egq.1_Silent_p.I402I|IGSF3_uc001egs.1_Silent_p.I75I	NM_001007237	NP_001007238	O75054	IGSF3_HUMAN	immunoglobulin superfamily, member 3 isoform 2	402	Ig-like C2-type 4.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Lung SC(450;0.225)	all_cancers(81;1.24e-06)|all_epithelial(167;4.85e-07)|all_lung(203;1.66e-06)|Lung NSC(69;1.11e-05)		Lung(183;0.0142)|Colorectal(144;0.0929)|LUSC - Lung squamous cell carcinoma(189;0.108)|COAD - Colon adenocarcinoma(174;0.139)|all cancers(265;0.159)|Epithelial(280;0.166)		GGAGGACTATGATGGGGATGT	0.502													7	172					0	0	0.008291	0	0
CD2	914	broad.mit.edu	37	1	117303229	117303229	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:117303229C>T	uc001egu.3	+	3	617	c.588C>T	c.(586-588)TCC>TCT	p.S196S	CD2_uc010owz.1_Silent_p.S196S|CD2_uc010oxa.1_Intron	NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	196	Extracellular (Potential).|Ig-like C2-type.				blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	GCAAGGAATCCAGTGTCGAGC	0.542													8	22					0	0	0.003080	0	0
VTCN1	79679	broad.mit.edu	37	1	117695749	117695749	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:117695749C>T	uc001ehb.2	-	4	760	c.688G>A	c.(688-690)GAC>AAC	p.D230N	VTCN1_uc001ehc.2_Missense_Mutation_p.D135N|VTCN1_uc009whf.1_Missense_Mutation_p.D114N	NM_024626	NP_078902	Q7Z7D3	VTCN1_HUMAN	V-set domain containing T cell activation	230	Extracellular (Potential).|Ig-like V-type 2.					integral to membrane|plasma membrane					0	Lung SC(450;0.225)	all_cancers(81;6.05e-06)|all_epithelial(167;5.59e-07)|all_lung(203;2.85e-06)|Lung NSC(69;2e-05)		Lung(183;0.0664)|LUSC - Lung squamous cell carcinoma(189;0.214)|Colorectal(144;0.23)		TTGGCAATGTCATTTTCAATC	0.388													18	58					0	0	0.016522	0	0
ANKRD35	148741	broad.mit.edu	37	1	145561656	145561656	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:145561656G>A	uc001eob.1	+	10	1452	c.1344G>A	c.(1342-1344)GGG>GGA	p.G448G	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Silent_p.G291G	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	448										ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CTACCAATGGGGCACAGACCT	0.572													55	62					0	0	0.014410	0	0
CHD1L	9557	broad.mit.edu	37	1	146724344	146724344	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:146724344A>T	uc001epm.3	+	2	257	c.194A>T	c.(193-195)AAT>ATT	p.N65I	CHD1L_uc001epn.3_5'UTR|CHD1L_uc010ozo.1_RNA|CHD1L_uc009wjg.2_RNA|CHD1L_uc009wjh.2_Missense_Mutation_p.N65I|CHD1L_uc010ozp.1_Intron|CHD1L_uc001epo.3_Intron	NM_004284	NP_004275	Q86WJ1	CHD1L_HUMAN	chromodomain helicase DNA binding protein	65	Helicase ATP-binding.				chromatin remodeling|DNA repair	cytoplasm|nucleus|plasma membrane	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(3)|lung(2)|upper_aerodigestive_tract(1)	6	all_hematologic(923;0.0487)					CATTGTCAGAATGGCTGTATC	0.512													41	53					0	0	0.007835	0	0
BCL9	607	broad.mit.edu	37	1	147090901	147090901	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:147090901G>A	uc001epq.2	+	8	1680	c.940G>A	c.(940-942)GTG>ATG	p.V314M	BCL9_uc010ozr.1_Missense_Mutation_p.V240M	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	314	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					CAATAGGGCAGTGACCCCTGT	0.582			T	IGH@|IGL@	B-ALL								19	106					0	0	0.008871	0	0
SV2A	9900	broad.mit.edu	37	1	149878275	149878275	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:149878275C>T	uc001etg.2	-	11	2303	c.1812G>A	c.(1810-1812)GGG>GGA	p.G604G	SV2A_uc009wlk.2_Silent_p.G56G|SV2A_uc001eth.2_Silent_p.G604G	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	604	Helical; (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	CTGCCAGTGTCCCCAGGAAGC	0.547													43	70					0	0	0.014410	0	0
PRPF3	9129	broad.mit.edu	37	1	150305459	150305460	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:150305459_150305460CC>TT	uc001eum.3	+	6	679_680	c.517_518CC>TT	c.(517-519)CCT>TTT	p.P173F	PRPF3_uc009wlp.2_RNA|PRPF3_uc010pca.1_Missense_Mutation_p.P132F|PRPF3_uc010pcb.1_Missense_Mutation_p.P124F|PRPF3_uc009wlq.1_RNA	NM_004698	NP_004689	O43395	PRPF3_HUMAN	PRP3 pre-mRNA processing factor 3 homolog	173					nuclear mRNA splicing, via spliceosome	Cajal body|cytoplasm|nuclear speck|spliceosomal complex	protein binding			ovary(1)	1	Lung NSC(24;5.57e-29)|Breast(34;0.000844)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)	Colorectal(1306;0.0149)		GCCAAAGACTCCTTCTTCCTCC	0.376													36	57					0	0	0.004672	0	0
TARS2	80222	broad.mit.edu	37	1	150463152	150463152	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:150463152C>T	uc001euq.2	+	4	470	c.463C>T	c.(463-465)CCA>TCA	p.P155S	TARS2_uc010pcd.1_Intron|TARS2_uc001eur.2_Missense_Mutation_p.P155S|TARS2_uc009wlt.2_5'UTR|TARS2_uc009wls.2_Missense_Mutation_p.P155S	NM_025150	NP_079426	Q9BW92	SYTM_HUMAN	threonyl-tRNA synthetase 2, mitochondrial	155					threonyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|threonine-tRNA ligase activity			ovary(1)	1	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.51e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)		L-Threonine(DB00156)	CTGCAGAGGTCCAAGTACAGA	0.493													77	100					0	0	0.014410	0	0
TARS2	80222	broad.mit.edu	37	1	150469026	150469026	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:150469026C>T	uc001euq.2	+	8	850	c.843C>T	c.(841-843)TTC>TTT	p.F281F	TARS2_uc010pcd.1_RNA|TARS2_uc001eur.2_Intron|TARS2_uc009wlt.2_Intron|TARS2_uc009wls.2_Intron	NM_025150	NP_079426	Q9BW92	SYTM_HUMAN	threonyl-tRNA synthetase 2, mitochondrial	281					threonyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|threonine-tRNA ligase activity			ovary(1)	1	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.51e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)		L-Threonine(DB00156)	GGATTTCCTTCCCCACAACAG	0.532													38	170					0	0	0.021022	0	0
THEM5	284486	broad.mit.edu	37	1	151825969	151825969	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:151825969G>A	uc009wnd.2	-	1	205	c.73C>T	c.(73-75)CTG>TTG	p.L25L		NM_182578	NP_872384	Q8N1Q8	THEM5_HUMAN	thioesterase superfamily member 5	25							hydrolase activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			AGTCTGGGCAGGATACGGGGG	0.582													32	142					0	0	0.021022	0	0
TCHHL1	126637	broad.mit.edu	37	1	152058807	152058807	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:152058807C>T	uc001ezo.1	-	3	1416	c.1351G>A	c.(1351-1353)GGA>AGA	p.G451R		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	451							calcium ion binding	p.G451E(1)		ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			TGATCTCCTCCTTCTGAGCTT	0.443													61	83					0	0	0.014410	0	0
RPTN	126638	broad.mit.edu	37	1	152129412	152129412	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:152129412C>T	uc001ezs.1	-	3	228	c.163G>A	c.(163-165)GAA>AAA	p.E55K		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	55	S-100-like (By similarity).|EF-hand 2.					proteinaceous extracellular matrix	calcium ion binding				0						AAGATGGTTTCCACAGTCTCT	0.418													18	20					0	0	0.008871	0	0
FLG	2312	broad.mit.edu	37	1	152275372	152275372	+	Missense_Mutation	SNP	C	T	T	rs149094882		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:152275372C>T	uc001ezu.1	-	3	12026	c.11990G>A	c.(11989-11991)GGA>GAA	p.G3997E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3997					keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ACTAACACTTCCGTGCTGAGA	0.403									Ichthyosis				27	89					0	0	0.006320	0	0
PGLYRP4	57115	broad.mit.edu	37	1	153309724	153309724	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:153309724G>A	uc001fbo.2	-	8	941	c.876C>T	c.(874-876)GTC>GTT	p.V292V	PGLYRP4_uc001fbp.2_Silent_p.V288V	NM_020393	NP_065126	Q96LB8	PGRP4_HUMAN	peptidoglycan recognition protein-I-beta	292					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)|skin(1)	4	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGGAGCCTTGGACATTCCAGC	0.547													7	41					0	0	0.001984	0	0
S100A7A	338324	broad.mit.edu	37	1	153390687	153390687	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:153390687C>T	uc001fbt.1	+	2	186	c.129C>T	c.(127-129)TTC>TTT	p.F43F		NM_176823	NP_789793	Q86SG5	S1A7A_HUMAN	S100 calcium binding protein A7-like 1	43	EF-hand 1.					cytoplasm	calcium ion binding			skin(1)	1	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			TCCCCAATTTCCTCAGTGCCT	0.413													31	107					0	0	0.012213	0	0
THBS3	7059	broad.mit.edu	37	1	155167720	155167720	+	Splice_Site	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:155167720C>T	uc001fix.2	-	19	2277	c.2254_splice	c.e19-1	p.G752_splice	RAG1AP1_uc010pey.1_Intron|THBS3_uc009wqi.2_Splice_Site_p.G743_splice|THBS3_uc001fiz.2_Splice_Site_p.G715_splice|THBS3_uc001fiy.2_Splice_Site_p.G281_splice|THBS3_uc010pfu.1_Splice_Site_p.G632_splice|THBS3_uc010pfv.1_Intron	NM_007112	NP_009043	P49746	TSP3_HUMAN	thrombospondin 3 precursor						cell-matrix adhesion	extracellular region|perinuclear region of cytoplasm	calcium ion binding|heparin binding|structural molecule activity			breast(3)|ovary(2)	5	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			TTTCCATGCCCTGGGGTTGTA	0.517													15	82					0	0	0.020292	0	0
HCN3	57657	broad.mit.edu	37	1	155257581	155257581	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:155257581A>G	uc001fjz.1	+	8	1660	c.1652A>G	c.(1651-1653)AAT>AGT	p.N551S	RAG1AP1_uc010pey.1_Intron|HCN3_uc010pfz.1_Missense_Mutation_p.N246S	NM_020897	NP_065948	Q9P1Z3	HCN3_HUMAN	hyperpolarization activated cyclic	551	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)|breast(1)	2	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			GGCAAGAAGAATTCCATACTG	0.512													68	64					0	0	0.014410	0	0
FDPS	2224	broad.mit.edu	37	1	155279652	155279652	+	Missense_Mutation	SNP	G	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:155279652G>C	uc001fkc.2	+	2	291	c.72G>C	c.(70-72)GAG>GAC	p.E24D	RAG1AP1_uc010pey.1_Intron|FDPS_uc001fkd.2_Intron|FDPS_uc001fke.2_Missense_Mutation_p.E24D|FDPS_uc001fkf.2_Intron	NM_002004	NP_001995	P14324	FPPS_HUMAN	farnesyl diphosphate synthase isoform a	24					cholesterol biosynthetic process|interspecies interaction between organisms|isoprenoid biosynthetic process	cytosol|nucleus	dimethylallyltranstransferase activity|geranyltranstransferase activity|metal ion binding				0	Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;2.03e-10)|all cancers(21;5.23e-10)|BRCA - Breast invasive adenocarcinoma(34;0.000549)|LUSC - Lung squamous cell carcinoma(543;0.127)		Alendronate(DB00630)|Ibandronate(DB00710)|Pamidronate(DB00282)|Risedronate(DB00884)|Zoledronate(DB00399)	CACCCCGGGAGAGGTGGCTGG	0.682													4	13					0	0	0.014758	0	0
BCAN	63827	broad.mit.edu	37	1	156621324	156621324	+	Silent	SNP	C	T	T	rs150989682	byFrequency	TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:156621324C>T	uc001fpp.2	+	7	1476	c.1140C>T	c.(1138-1140)ATC>ATT	p.I380I	BCAN_uc001fpo.2_Silent_p.I380I	NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	380					cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TAGAGGCTATCGTCACAGTGA	0.488													34	27					0	0	0.012213	0	0
HDGF	3068	broad.mit.edu	37	1	156714925	156714925	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:156714925G>A	uc001fpy.3	-	3	500	c.178C>T	c.(178-180)CCC>TCC	p.P60S	HDGF_uc009wsd.2_Missense_Mutation_p.P28S|HDGF_uc001fpz.3_Missense_Mutation_p.P53S|HDGF_uc009wse.2_Missense_Mutation_p.P76S|HDGF_uc010phr.1_Missense_Mutation_p.P76S|HDGF_uc009wsf.2_Missense_Mutation_p.P28S|HDGF_uc009wsg.2_Missense_Mutation_p.P60S	NM_004494	NP_004485	P51858	HDGF_HUMAN	hepatoma-derived growth factor isoform a	60	PWWP.				cell proliferation|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus	DNA binding|growth factor activity|heparin binding|nucleotide binding			lung(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)	Breast(1374;0.198)		Colorectal(1306;0.018)		AGGTCTTTGGGGCCCAGGAAT	0.587													26	33					0	0	0.005443	0	0
FCRL1	115350	broad.mit.edu	37	1	157771723	157771723	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:157771723C>T	uc001frg.2	-	5	981	c.868G>A	c.(868-870)GTG>ATG	p.V290M	FCRL1_uc001frf.2_RNA|FCRL1_uc001frh.2_Missense_Mutation_p.V290M|FCRL1_uc001fri.2_Missense_Mutation_p.V290M|FCRL1_uc001frj.2_RNA	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	290	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			TTGAGTGTCACCGCCTCACTG	0.547													35	46					0	0	0.021022	0	0
KCNJ10	3766	broad.mit.edu	37	1	160011970	160011970	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:160011970G>A	uc001fuw.1	-	2	503	c.353C>T	c.(352-354)GCC>GTC	p.A118V		NM_002241	NP_002232	P78508	IRK10_HUMAN	potassium inwardly-rectifying channel, subfamily	118						integral to plasma membrane	ATP binding|ATP-activated inward rectifier potassium channel activity			ovary(1)	1	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GAAGAGGAAGGCTCCAGTGAG	0.572													25	100					0	0	0.021523	0	0
VANGL2	57216	broad.mit.edu	37	1	160390266	160390266	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:160390266C>T	uc001fwb.1	+	6	1165	c.866C>T	c.(865-867)GCC>GTC	p.A289V	VANGL2_uc001fwc.1_Missense_Mutation_p.A289V	NM_020335	NP_065068	Q9ULK5	VANG2_HUMAN	vang-like 2	289	Cytoplasmic (Potential).				apical protein localization|heart looping|nonmotile primary cilium assembly	apical plasma membrane|integral to membrane				ovary(1)	1	all_cancers(52;1.08e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TACAACCCTGCCCTCCTCAAC	0.607													26	89					0	0	0.021523	0	0
CD84	8832	broad.mit.edu	37	1	160523735	160523735	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:160523735T>C	uc001fwh.3	-	3	614	c.590A>G	c.(589-591)AAC>AGC	p.N197S	CD84_uc001fwf.3_Missense_Mutation_p.N197S|CD84_uc001fwg.3_Missense_Mutation_p.N197S|CD84_uc009wtn.2_Missense_Mutation_p.N197S|CD84_uc001fwi.3_Missense_Mutation_p.N83S|CD84_uc001fwj.2_Missense_Mutation_p.N197S|CD84_uc001fwk.2_Missense_Mutation_p.N197S	NM_003874	NP_003865	Q9UIB8	SLAF5_HUMAN	CD84 molecule	197	Extracellular (Potential).|Ig-like C2-type.				blood coagulation|defense response|homophilic cell adhesion|leukocyte migration	integral to plasma membrane	receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(52;3.62e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			GCTGACAGGGTTCTGGGCTGT	0.527													10	37					0	0	0.006214	0	0
CD244	51744	broad.mit.edu	37	1	160808808	160808808	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:160808808G>A	uc009wtq.2	-	4	880	c.702C>T	c.(700-702)ATC>ATT	p.I234I	CD244_uc001fxa.2_Silent_p.I229I|CD244_uc009wtp.2_RNA|CD244_uc009wtr.2_Silent_p.I137I|CD244_uc010pjt.1_RNA	NM_016382	NP_057466	Q9BZW8	CD244_HUMAN	CD244 natural killer cell receptor 2B4	234	Helical; (Potential).				blood coagulation|leukocyte migration	integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			TTAGAATCACGATGATCACCA	0.517													13	57					0	0	0.020292	0	0
SDHC	6391	broad.mit.edu	37	1	161310395	161310395	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:161310395C>T	uc001gag.2	+	4	221	c.191C>T	c.(190-192)CCC>CTC	p.P64L	SDHC_uc001gai.2_Missense_Mutation_p.P64L|SDHC_uc001gaj.2_Missense_Mutation_p.P11L|SDHC_uc001gak.2_Missense_Mutation_p.P30L|SDHC_uc001gah.2_Missense_Mutation_p.P30L	NM_003001	NP_002992	Q99643	C560_HUMAN	succinate dehydrogenase complex, subunit C	64	Helical; (By similarity).				respiratory electron transport chain|transport|tricarboxylic acid cycle	integral to membrane|mitochondrial respiratory chain complex II|plasma membrane succinate dehydrogenase complex	electron carrier activity|heme binding|succinate dehydrogenase activity				0	all_cancers(52;6.96e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Succinic acid(DB00139)	TGGTCTCTTCCCATGGCGATG	0.373			Mis|N|F			paraganglioma|pheochromocytoma			Familial_Paragangliomas|Carney-Stratakis_syndrome				8	232					0	0	0.006214	0	0
SH2D1B	117157	broad.mit.edu	37	1	162368835	162368835	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:162368835C>T	uc001gbz.1	-	3	363	c.241G>A	c.(241-243)GAA>AAA	p.E81K	SH2D1B_uc001gca.1_Intron	NM_053282	NP_444512	O14796	SH21B_HUMAN	SH2 domain containing 1B	81	SH2.									pancreas(1)	1	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.126)			GAGATCAGTTCCTTTAGGCTT	0.408													35	51					0	0	0.005524	0	0
ADCY10	55811	broad.mit.edu	37	1	167779006	167779006	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:167779006C>T	uc001ger.2	-	33	5040	c.4742G>A	c.(4741-4743)TGG>TAG	p.W1581*	ADCY10_uc009wvj.2_RNA|ADCY10_uc009wvk.2_Nonsense_Mutation_p.W1489*|ADCY10_uc010plj.1_Nonsense_Mutation_p.W1428*	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	1581					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						AATTTTTTCCCATGATGGGAG	0.388													39	47					0	0	0.005524	0	0
ADCY10	55811	broad.mit.edu	37	1	167830287	167830287	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:167830287G>A	uc001ger.2	-	15	1929	c.1631C>T	c.(1630-1632)TCA>TTA	p.S544L	ADCY10_uc009wvk.2_Missense_Mutation_p.S452L|ADCY10_uc010plj.1_Missense_Mutation_p.S391L|ADCY10_uc009wvl.2_Missense_Mutation_p.S543L	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	544					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						CTTATTCAATGAAATGGCAAT	0.328													11	47					0	0	0.008291	0	0
FMO3	2328	broad.mit.edu	37	1	171079999	171079999	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:171079999C>T	uc001ghi.2	+	6	799	c.688C>T	c.(688-690)CCT>TCT	p.P230S	FMO3_uc001ghh.2_Missense_Mutation_p.P230S|FMO3_uc010pmb.1_Missense_Mutation_p.P210S|FMO3_uc010pmc.1_Missense_Mutation_p.P167S	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	230					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CAATGGTTATCCTTGGGACAT	0.463													25	32					0	0	0.006320	0	0
SERPINC1	462	broad.mit.edu	37	1	173883747	173883747	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:173883747C>T	uc001gjt.2	-	2	471	c.352G>A	c.(352-354)GCT>ACT	p.A118T		NM_000488	NP_000479	P01008	ANT3_HUMAN	serpin peptidase inhibitor, clade C, member 1	118					blood coagulation|regulation of proteolysis	extracellular space|plasma membrane	heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(1)	1					Enoxaparin(DB01225)|Fondaparinux sodium(DB00569)|Heparin(DB01109)	ATAGCAAAAGCCGTGGAGATA	0.507											OREG0013990	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	79					0	0	0.008361	0	0
TNN	63923	broad.mit.edu	37	1	175052945	175052945	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:175052945G>A	uc001gkl.1	+	5	1221	c.1108G>A	c.(1108-1110)GAG>AAG	p.E370K	TNN_uc010pmx.1_Missense_Mutation_p.E370K	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	370	Fibronectin type-III 2.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CCTTGACGTGGAGTGGGAAAA	0.562													37	38					0	0	0.021022	0	0
PAPPA2	60676	broad.mit.edu	37	1	176809372	176809372	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:176809372G>A	uc001gkz.2	+	22	6430	c.5266G>A	c.(5266-5268)GGA>AGA	p.G1756R	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1756					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CTATGACGGGGGAGACTGCTG	0.542													9	74					0	0	0.013537	0	0
C1orf125	126859	broad.mit.edu	37	1	179494559	179494559	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:179494559G>A	uc001gmo.2	+	22	2714	c.2587G>A	c.(2587-2589)GAA>AAA	p.E863K	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmp.2_Intron|C1orf125_uc009wxh.2_RNA	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	863	Glu-rich.										0						ACTTCAGGAGGAAAATAAAGA	0.279													5	18					0	0	0.001984	0	0
CACNA1E	777	broad.mit.edu	37	1	181701835	181701835	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:181701835G>A	uc001gow.2	+	20	2778	c.2613G>A	c.(2611-2613)AGG>AGA	p.R871R	CACNA1E_uc009wxs.2_Silent_p.R759R|CACNA1E_uc001gox.1_Silent_p.R97R|CACNA1E_uc009wxt.2_Silent_p.R97R	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	871	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						ACAACCAGAGGACCCCTTTGT	0.612													7	25					0	0	0.003080	0	0
CACNA1E	777	broad.mit.edu	37	1	181767540	181767540	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:181767540C>T	uc001gow.2	+	47	6548	c.6383C>T	c.(6382-6384)TCC>TTC	p.S2128F	CACNA1E_uc009wxs.2_Missense_Mutation_p.S2016F|CACNA1E_uc009wxt.2_Missense_Mutation_p.S1397F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2171	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CCCCTCCTTTCCTACAGCTCC	0.622													28	111					0	0	0.007291	0	0
RGS8	85397	broad.mit.edu	37	1	182616032	182616032	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:182616032G>A	uc010pnw.1	-	7	639	c.381C>T	c.(379-381)ACC>ACT	p.T127T	RGS8_uc001gpn.1_Silent_p.T127T|RGS8_uc001gpm.1_Silent_p.T145T	NM_001102450	NP_001095920	P57771	RGS8_HUMAN	regulator of G-protein signalling 8 isoform 2	127	RGS.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)	1						TGGCTTCTCGGGTCTGGAAGT	0.507													34	129					0	0	0.019004	0	0
DHX9	1660	broad.mit.edu	37	1	182847207	182847207	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:182847207C>T	uc001gpr.2	+	20	2413	c.2250C>T	c.(2248-2250)ACC>ACT	p.T750T	DHX9_uc001gps.2_Silent_p.T536T|DHX9_uc001gpt.2_Silent_p.T29T	NM_001357	NP_001348	Q08211	DHX9_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 9	750	Helicase C-terminal.				CRD-mediated mRNA stabilization|nuclear mRNA splicing, via spliceosome	centrosome|CRD-mediated mRNA stability complex|nucleolus|nucleoplasm|ribonucleoprotein complex	ATP binding|ATP-dependent DNA helicase activity|ATP-dependent RNA helicase activity|DNA binding|double-stranded RNA binding|protein binding			ovary(2)	2						ACTATGCTACCGTATGGGCAT	0.448													14	16					0	0	0.004990	0	0
HMCN1	83872	broad.mit.edu	37	1	185976275	185976275	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:185976275C>T	uc001grq.1	+	30	4720	c.4491C>T	c.(4489-4491)GGC>GGT	p.G1497G		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	1497	Ig-like C2-type 12.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TATTTTTGGGCGATCCTAATG	0.353													4	17					0	0	0.009096	0	0
PLA2G4A	5321	broad.mit.edu	37	1	186909142	186909142	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:186909142G>A	uc001gsc.2	+	10	1154	c.949G>A	c.(949-951)GAA>AAA	p.E317K	PLA2G4A_uc010pos.1_Missense_Mutation_p.E257K	NM_024420	NP_077734	P47712	PA24A_HUMAN	cytosolic phospholipase A2, group IVA	317	PLA2c.				phospholipid catabolic process|platelet activating factor biosynthetic process|platelet activation	cytosol|endoplasmic reticulum membrane	calcium ion binding|calcium-dependent phospholipid binding|lysophospholipase activity			lung(2)|breast(1)	3					Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Medrysone(DB00253)|Quinacrine(DB01103)	CAGTTTGAAGGAAAAAGTTAA	0.358													9	7					0	0	0.008291	0	0
KCNT2	343450	broad.mit.edu	37	1	196300353	196300353	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:196300353C>T	uc001gtd.1	-	18	2096	c.2036G>A	c.(2035-2037)GGA>GAA	p.G679E	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.G629E|KCNT2_uc001gtf.1_Missense_Mutation_p.G679E|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.G679E|KCNT2_uc001gth.1_Missense_Mutation_p.G200E	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	679	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						GGGTGAACTTCCTATATATGG	0.323													9	61					0	0	0.008291	0	0
CFHR5	81494	broad.mit.edu	37	1	196953100	196953100	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:196953100C>T	uc001gts.3	+	3	391	c.263C>T	c.(262-264)TCC>TTC	p.S88F		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	88	Sushi 2.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						GGAATGTGTTCCTTTCCTTTT	0.308													7	22					0	0	0.001984	0	0
F13B	2165	broad.mit.edu	37	1	197030188	197030188	+	Missense_Mutation	SNP	C	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:197030188C>G	uc001gtt.1	-	4	513	c.469G>C	c.(469-471)GAA>CAA	p.E157Q		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	157	Sushi 3.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TTATATAATTCAGGAGCCAAA	0.264													3	13					0	0	0.004672	0	0
CRB1	23418	broad.mit.edu	37	1	197326087	197326087	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:197326087C>T	uc001gtz.2	+	5	1250	c.1115C>T	c.(1114-1116)TCT>TTT	p.S372F	CRB1_uc010poz.1_Missense_Mutation_p.S303F|CRB1_uc001gty.1_Missense_Mutation_p.S372F|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.S260F|CRB1_uc010ppb.1_Missense_Mutation_p.S372F|CRB1_uc010ppc.1_RNA	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	372	Extracellular (Potential).|EGF-like 9.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CTGCCTTCTTCTTTCAGCTAC	0.473													14	71					0	0	0.004990	0	0
PTPRC	5788	broad.mit.edu	37	1	198685862	198685862	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:198685862A>T	uc001gur.1	+	13	1517	c.1337A>T	c.(1336-1338)AAT>ATT	p.N446I	PTPRC_uc001gus.1_Missense_Mutation_p.N398I|PTPRC_uc001gut.1_Missense_Mutation_p.N285I|PTPRC_uc009wzf.1_Missense_Mutation_p.N334I|PTPRC_uc010ppg.1_Missense_Mutation_p.N382I	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	446	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						GATTTGCAAAATTTAAAACCT	0.303													37	38					0	0	0.021022	0	0
MYBPH	4608	broad.mit.edu	37	1	203140628	203140628	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:203140628C>T	uc001gzh.1	-	5	735	c.676G>A	c.(676-678)GAC>AAC	p.D226N	FMOD_uc010pqi.1_Intron	NM_004997	NP_004988	Q13203	MYBPH_HUMAN	myosin binding protein H	226	Ig-like C2-type 1.				cell adhesion|regulation of striated muscle contraction	myosin filament	structural constituent of muscle				0			BRCA - Breast invasive adenocarcinoma(75;0.153)	Colorectal(1306;0.0306)		GAGTCCTGGTCCCCGGTGCGC	0.667													21	18					0	0	0.021523	0	0
OPTC	26254	broad.mit.edu	37	1	203467944	203467944	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:203467944G>A	uc001gzu.1	+	4	622	c.506G>A	c.(505-507)AGG>AAG	p.R169K		NM_014359	NP_055174	Q9UBM4	OPT_HUMAN	opticin precursor	169	LRR 1.					proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding				0			BRCA - Breast invasive adenocarcinoma(75;0.109)			AGCCGTATCAGGGCCGAAGAC	0.542													10	69					0	0	0.010729	0	0
C1orf157	284573	broad.mit.edu	37	1	204009447	204009447	+	RNA	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:204009447G>A	uc001haj.2	-	2		c.249C>T			C1orf157_uc001hak.2_RNA|C1orf157_uc010pqo.1_RNA	NR_027902				Homo sapiens cDNA FLJ40343 fis, clone TESTI2032774.												0	all_cancers(21;0.083)|Breast(84;0.193)|all_epithelial(62;0.21)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0754)|Kidney(21;0.0934)|Epithelial(59;0.233)			AGACTGTAGGGGTGAGTTGAT	0.443													4	17					0	0	0.009096	0	0
AVPR1B	553	broad.mit.edu	37	1	206224806	206224806	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:206224806C>T	uc001hds.2	+	1	524	c.366C>T	c.(364-366)ACC>ACT	p.T122T		NM_000707	NP_000698	P47901	V1BR_HUMAN	arginine vasopressin receptor 1B	122	Helical; Name=3; (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity			ovary(2)|large_intestine(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.0312)		Desmopressin(DB00035)|Terlipressin(DB02638)|Vasopressin(DB00067)	TTGCCTCCACCTACATGCTGC	0.642													27	74					0	0	0.009535	0	0
DYRK3	8444	broad.mit.edu	37	1	206821372	206821372	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:206821372A>T	uc001hej.2	+	3	997	c.829A>T	c.(829-831)AGT>TGT	p.S277C	DYRK3_uc001hek.2_Intron|DYRK3_uc001hei.2_Missense_Mutation_p.S257C	NM_003582	NP_003573	O43781	DYRK3_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	277	Protein kinase.				erythrocyte differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|central_nervous_system(1)	3	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			CATGCTGGAAAGTTTCACATT	0.413													21	91					0	0	0.014323	0	0
CR1	1378	broad.mit.edu	37	1	207751155	207751155	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:207751155C>T	uc001hfy.2	+	21	3333	c.3193C>T	c.(3193-3195)CCT>TCT	p.P1065S	CR1_uc009xcl.1_Missense_Mutation_p.P615S|CR1_uc001hfx.2_Missense_Mutation_p.P1515S	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1065	Extracellular (Potential).|Sushi 17.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						TCCAGGAATTCCTTGTGGGCT	0.323													13	11					0	0	0.013537	0	0
TRAF3IP3	80342	broad.mit.edu	37	1	209950711	209950711	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:209950711G>A	uc001hho.2	+	12	1358	c.1068G>A	c.(1066-1068)AGG>AGA	p.R356R	TRAF3IP3_uc001hhl.2_Silent_p.R336R|TRAF3IP3_uc001hhm.1_Intron|TRAF3IP3_uc001hhn.2_Silent_p.R336R|TRAF3IP3_uc009xcr.2_Silent_p.R356R	NM_025228	NP_079504	Q9Y228	T3JAM_HUMAN	TRAF3-interacting JNK-activating modulator	356	Cytoplasmic (Potential).|Potential.					integral to membrane	protein binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.045)		CAGATAGCAGGGACTTACAGA	0.537													15	64					0	0	0.004007	0	0
PTPN14	5784	broad.mit.edu	37	1	214556657	214556657	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:214556657G>A	uc001hkk.1	-	13	2812	c.2541C>T	c.(2539-2541)ATC>ATT	p.I847I	PTPN14_uc010pty.1_Silent_p.I748I	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	847					lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		CACTCACCCTGATCATCATCT	0.507													29	46					0	0	0.008361	0	0
USH2A	7399	broad.mit.edu	37	1	216017672	216017672	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:216017672C>T	uc001hku.1	-	46	9609	c.9222G>A	c.(9220-9222)CTG>CTA	p.L3074L		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3074	Fibronectin type-III 17.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ACAGGTCTCTCAGAATAAACG	0.378										HNSCC(13;0.011)			16	18					0	0	0.008871	0	0
SUSD4	55061	broad.mit.edu	37	1	223441998	223441998	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:223441998G>A	uc001hnx.2	-	3	1015	c.381C>T	c.(379-381)ATC>ATT	p.I127I	SUSD4_uc001hny.3_Silent_p.I127I|SUSD4_uc010puw.1_5'UTR|SUSD4_uc001hnz.2_Silent_p.I127I|SUSD4_uc010pux.1_Silent_p.I56I	NM_017982	NP_060452	Q5VX71	SUSD4_HUMAN	sushi domain containing 4 isoform a	127	Sushi 2.|Extracellular (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(131;0.0611)		CAGCATCTTCGATTTGAGGGA	0.383													26	86					0	0	0.008361	0	0
TAF5L	27097	broad.mit.edu	37	1	229730512	229730512	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:229730512G>A	uc001htq.2	-	5	1468	c.1302C>T	c.(1300-1302)TTC>TTT	p.F434F		NM_014409	NP_055224	O75529	TAF5L_HUMAN	PCAF associated factor 65 beta isoform a	434	WD 4.				histone H3 acetylation|transcription from RNA polymerase II promoter	STAGA complex|transcription factor TFTC complex	sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)	1	Breast(184;0.193)|Ovarian(103;0.249)	Prostate(94;0.167)				AATTAGGGTGGAATTTGACAC	0.592													23	141					0	0	0.021523	0	0
PCNXL2	80003	broad.mit.edu	37	1	233386576	233386576	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:233386576C>T	uc001hvl.2	-	8	2366	c.2131G>A	c.(2131-2133)GAA>AAA	p.E711K	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA|PCNXL2_uc001hvq.1_Missense_Mutation_p.E10K	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	711						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GATCTAATTTCCCCTGTAAAA	0.323													3	8					0	0	0.004672	0	0
MTR	4548	broad.mit.edu	37	1	237052538	237052538	+	Missense_Mutation	SNP	T	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:237052538T>G	uc001hyi.3	+	28	3332	c.2909T>G	c.(2908-2910)GTG>GGG	p.V970G	MTR_uc010pxw.1_Missense_Mutation_p.V563G|MTR_uc010pxx.1_Missense_Mutation_p.V919G|MTR_uc010pxy.1_Missense_Mutation_p.V824G	NM_000254	NP_000245	Q99707	METH_HUMAN	5-methyltetrahydrofolate-homocysteine	970	AdoMet activation.				nervous system development|xenobiotic metabolic process	cytosol	cobalamin binding|homocysteine S-methyltransferase activity|methionine synthase activity|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;2.79e-22)|all_epithelial(177;4.84e-14)|Breast(1374;0.00123)|Prostate(94;0.0181)|Lung SC(1967;0.0262)|Acute lymphoblastic leukemia(190;0.117)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)	KIRC - Kidney renal clear cell carcinoma(1967;0.248)	Hydroxocobalamin(DB00200)|L-Methionine(DB00134)|Tetrahydrofolic acid(DB00116)	CAGAAGCTGGTGGACTACATT	0.498													6	97					0	0	0.003080	0	0
FMN2	56776	broad.mit.edu	37	1	240371412	240371412	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:240371412C>T	uc010pyd.1	+	5	3525	c.3300C>T	c.(3298-3300)CCC>CCT	p.P1100P	FMN2_uc010pye.1_Silent_p.P1104P	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1100	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CCCCTCCGCCCCCTCTACCCG	0.736													26	26					0	0	0.015359	0	0
FH	2271	broad.mit.edu	37	1	241661172	241661172	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:241661172A>G	uc001hyx.2	-	10	1521	c.1489T>C	c.(1489-1491)TTT>CTT	p.F497L		NM_000143	NP_000134	P07954	FUMH_HUMAN	fumarate hydratase precursor	497					fumarate metabolic process|tricarboxylic acid cycle	cell junction|mitochondrial matrix|tricarboxylic acid cycle enzyme complex	fumarate hydratase activity			lung(3)|ovary(1)|skin(1)	5	Ovarian(103;0.103)	all_cancers(173;2.37e-314)|all_epithelial(177;5.17e-286)|Breast(1374;1.06e-10)|Acute lymphoblastic leukemia(190;4.93e-10)|all_neural(198;0.00118)	OV - Ovarian serous cystadenocarcinoma(106;0.0214)	Colorectal(1306;2.33e-53)|COAD - Colon adenocarcinoma(196;1.05e-44)|KIRC - Kidney renal clear cell carcinoma(1967;0.000109)		CATTCGTCAAACTGCTCTGCT	0.348			Mis|N|F			lieomyomatosis|renal			Hereditary_Leiomyomatosis_and_Renal_Cell_Cancer				3	21					0	0	0.004672	0	0
TRIM58	25893	broad.mit.edu	37	1	248039784	248039784	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:248039784A>T	uc001ido.2	+	6	1502	c.1454A>T	c.(1453-1455)CAT>CTT	p.H485L	OR2W3_uc001idp.1_Intron	NM_015431	NP_056246	Q8NG06	TRI58_HUMAN	tripartite motif-containing 58	485						intracellular	zinc ion binding			skin(3)|ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)	7	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			AGAGATGATCATCTCTAAAAT	0.438													9	38					0	0	0.004482	0	0
OR2L2	26246	broad.mit.edu	37	1	248202104	248202104	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:248202104G>A	uc001idw.2	+	1	631	c.535G>A	c.(535-537)GAT>AAT	p.D179N	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	179	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			TTTTTTCTGTGATGTTCCAGC	0.443													97	103					0	0	0.014410	0	0
OR2T4	127074	broad.mit.edu	37	1	248525725	248525725	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:248525725C>T	uc001ieh.1	+	1	843	c.843C>T	c.(841-843)ATC>ATT	p.I281I		NM_001004696	NP_001004696	Q8NH00	OR2T4_HUMAN	olfactory receptor, family 2, subfamily T,	281	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTGTGGTCATCCTCTTCTATG	0.542													72	83					0	0	0.014410	0	0
OR2T6	254879	broad.mit.edu	37	1	248551338	248551338	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:248551338G>A	uc001iei.1	+	1	429	c.429G>A	c.(427-429)ATG>ATA	p.M143I		NM_001005471	NP_001005471	Q8NHC8	OR2T6_HUMAN	olfactory receptor, family 2, subfamily T,	143	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCTGCTGGATGATCCTGGCCA	0.562													8	52					0	0	0.006214	0	0
OR2G6	391211	broad.mit.edu	37	1	248685273	248685273	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr1:248685273C>T	uc001ien.1	+	1	326	c.326C>T	c.(325-327)TCG>TTG	p.S109L		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	109	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GGGTTGGGCTCGTCTGAGTGT	0.547													29	93					0	0	0.010818	0	0
AKR1E2	83592	broad.mit.edu	37	10	4879766	4879766	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:4879766C>T	uc001ihi.2	+	5	690	c.575C>T	c.(574-576)ACC>ATC	p.T192I	AKR1E2_uc001ihl.1_RNA|AKR1E2_uc010qam.1_Missense_Mutation_p.T153I|AKR1E2_uc001ihh.1_Missense_Mutation_p.T192I|AKR1E2_uc009xhw.2_Intron|AKR1E2_uc001ihj.2_RNA|AKR1E2_uc001ihk.2_Missense_Mutation_p.T192I	NM_001040177	NP_001035267	Q96JD6	AKCL2_HUMAN	aldo-keto reductase family 1, member E2	192						cytoplasm	1,5-anhydro-D-fructose reductase activity				0						AAGCCACTAACCAACCAGGTA	0.522													7	31					0	0	0.001984	0	0
FAM171A1	221061	broad.mit.edu	37	10	15296731	15296731	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:15296731C>T	uc001iob.2	-	4	573	c.566G>A	c.(565-567)GGA>GAA	p.G189E		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	189	Extracellular (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						TGTTCCATTTCCGTCTAATCC	0.463													14	37					0	0	0.020292	0	0
ITGA8	8516	broad.mit.edu	37	10	15697376	15697376	+	Silent	SNP	G	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:15697376G>T	uc001ioc.1	-	11	978	c.978C>A	c.(976-978)GTC>GTA	p.V326V	ITGA8_uc010qcb.1_Silent_p.V311V	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	326	Extracellular (Potential).|FG-GAP 5.				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						CATCTGATACGACAACGGTAT	0.318													4	47					0.00024832	0.000254095	0.009096	1	0
NEBL	10529	broad.mit.edu	37	10	21120162	21120162	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:21120162A>C	uc001iqi.2	-	16	2031	c.1634T>G	c.(1633-1635)ATC>AGC	p.I545S	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	545	Nebulin 15.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						GGCTCGAAGGATATCTGGGAT	0.378													14	31					0	0	0.003163	0	0
MYO3A	53904	broad.mit.edu	37	10	26377279	26377279	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:26377279G>A	uc001isn.2	+	15	1867	c.1507G>A	c.(1507-1509)GGA>AGA	p.G503R	MYO3A_uc009xko.1_Missense_Mutation_p.G503R|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Missense_Mutation_p.G503R	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	503	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						AGCGGTAGTGGGAGCACAGAT	0.393													15	35					0	0	0.004990	0	0
Unknown	0	broad.mit.edu	37	10	30992563	30992563	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:30992563G>A	uc010qdx.1	+	6	1005	c.463G>A	c.(463-465)GAG>AAG	p.E155K						SubName: Full=cDNA FLJ59642, highly similar to Supervillin;																		AAGACCAAATGAGAAGAACCC	0.478													47	160					0	0	0.011902	0	0
ZNF438	220929	broad.mit.edu	37	10	31137869	31137870	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:31137869_31137870GG>AA	uc010qdz.1	-	7	1899_1900	c.1464_1465CC>TT	c.(1462-1467)TCCCCT>TCTTCT	p.P489S	ZNF438_uc001ivn.2_Missense_Mutation_p.P440S|ZNF438_uc010qdy.1_Missense_Mutation_p.P479S|ZNF438_uc001ivo.3_Missense_Mutation_p.P53S|ZNF438_uc009xlg.2_Missense_Mutation_p.P489S|ZNF438_uc001ivp.3_Missense_Mutation_p.P479S|ZNF438_uc010qea.1_Missense_Mutation_p.P489S|ZNF438_uc010qeb.1_Missense_Mutation_p.P489S|ZNF438_uc010qec.1_Missense_Mutation_p.P53S	NM_182755	NP_877432	Q7Z4V0	ZN438_HUMAN	zinc finger protein 438 isoform a	489					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2		Prostate(175;0.0587)				CTGGGCTTAGGGGAAGAGCTGT	0.475													42	99					0	0	0.004672	0	0
NRP1	8829	broad.mit.edu	37	10	33481215	33481215	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:33481215G>A	uc001iwx.3	-	13	2579	c.2056C>T	c.(2056-2058)CAC>TAC	p.H686Y	NRP1_uc001iwv.3_Missense_Mutation_p.H686Y|NRP1_uc009xlz.2_Missense_Mutation_p.H679Y|NRP1_uc001iww.3_Missense_Mutation_p.H498Y|NRP1_uc001iwy.3_Missense_Mutation_p.H679Y	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	686	Extracellular (Potential).|MAM.				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	ATACCTGTGTGATCCTGAATG	0.502													45	140					0	0	0.011902	0	0
FZD8	8325	broad.mit.edu	37	10	35928513	35928513	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:35928513G>A	uc001iyz.1	-	1	1850	c.1845C>T	c.(1843-1845)TCC>TCT	p.S615S		NM_031866	NP_114072	Q9H461	FZD8_HUMAN	frizzled 8 precursor	615	Cytoplasmic (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|embryo development|gonad development|T cell differentiation in thymus|vasculature development	cell projection|Golgi apparatus|integral to membrane|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding				0						GGGTGCACAGGGAGCGCCAGG	0.443													4	11					0	0	0.009096	0	0
ZNF248	57209	broad.mit.edu	37	10	38126603	38126603	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:38126603G>A	uc001izd.1	-	5	679	c.180C>T	c.(178-180)ATC>ATT	p.I60I	ZNF248_uc009xmc.2_Silent_p.I60I|ZNF248_uc001izb.2_RNA|ZNF248_uc001izc.2_Silent_p.I60I|ZNF248_uc010qeu.1_Silent_p.I60I	NM_021045	NP_066383	Q8NDW4	ZN248_HUMAN	zinc finger protein 248	60	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.I60I(1)		ovary(1)	1						CTCCTTGCTCGATCTTAAAGA	0.428													12	15					0	0	0.013537	0	0
HNRNPF	3185	broad.mit.edu	37	10	43882742	43882742	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:43882742G>A	uc009xmh.1	-	3	1078	c.591C>T	c.(589-591)CCC>CCT	p.P197P	HNRNPF_uc001jar.2_Silent_p.P197P|HNRNPF_uc001jas.2_Silent_p.P197P|HNRNPF_uc001jat.2_Silent_p.P197P|HNRNPF_uc001jav.2_Silent_p.P197P|HNRNPF_uc001jau.2_Silent_p.P197P|uc010qfa.1_Missense_Mutation_p.G142R	NM_001098208	NP_001091678	P52597	HNRPF_HUMAN	heterogeneous nuclear ribonucleoprotein F	197					regulation of RNA splicing	catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding				0						ACTTCAGAGGGGGATCTGAGT	0.562													26	73					0	0	0.004656	0	0
ZNF239	8187	broad.mit.edu	37	10	44052335	44052335	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:44052335G>A	uc001jaw.3	-	2	1846	c.1193C>T	c.(1192-1194)ACT>ATT	p.T398I	ZNF239_uc001jax.3_Missense_Mutation_p.T398I|ZNF239_uc009xmj.2_Missense_Mutation_p.T398I|ZNF239_uc009xmk.2_Missense_Mutation_p.T398I	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	398					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						CTTCTCTCCAGTGTGGACTCT	0.522													6	19					0	0	0.001984	0	0
PPYR1	5540	broad.mit.edu	37	10	47086923	47086923	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:47086923C>T	uc001jee.2	+	3	559	c.140C>T	c.(139-141)TCC>TTC	p.S47F	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Missense_Mutation_p.S47F	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	47	Helical; Name=1; (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						ATCGTCACTTCCTACAGCATT	0.522													22	231					0	0	0.014323	0	0
RBP3	5949	broad.mit.edu	37	10	48382054	48382054	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:48382054C>T	uc001jez.2	-	4	3709	c.3595G>A	c.(3595-3597)GGG>AGG	p.G1199R		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	1199	4 X approximate tandem repeats.|4.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	TCCGAGGCCCCCACAGAACGG	0.642													13	42					0	0	0.020292	0	0
RBP3	5949	broad.mit.edu	37	10	48390152	48390152	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:48390152G>A	uc001jez.2	-	1	840	c.726C>T	c.(724-726)ATC>ATT	p.I242I		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	242	4 X approximate tandem repeats.|1.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GGATGTGCGCGATGTCCTCGG	0.647													12	29					0	0	0.016723	0	0
GDF2	2658	broad.mit.edu	37	10	48413875	48413875	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:48413875G>A	uc001jfa.1	-	2	1156	c.993C>T	c.(991-993)TCC>TCT	p.S331S		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	331					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						TTACCCGCAGGGAGGTCTTTT	0.612													23	64					0	0	0.007291	0	0
GDF2	2658	broad.mit.edu	37	10	48416646	48416646	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:48416646C>T	uc001jfa.1	-	1	211	c.48G>A	c.(46-48)CTG>CTA	p.L16L		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	16					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						GGGAGCCAGCCAGCAGGGACA	0.682													7	16					0	0	0.004482	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49658807	49658807	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:49658807G>A	uc001jgt.2	-	9	1662	c.1365C>T	c.(1363-1365)TCC>TCT	p.S455S	ARHGAP22_uc001jgs.2_Silent_p.S365S|ARHGAP22_uc001jgu.2_Silent_p.S471S|ARHGAP22_uc010qgl.1_Silent_p.S412S|ARHGAP22_uc010qgm.1_Silent_p.S461S|ARHGAP22_uc001jgv.2_Silent_p.S153S|ARHGAP22_uc001jgr.2_Silent_p.S172S	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	455	Ser-rich.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						TCCCGCCGGAGGAGATGATGG	0.682													3	4					0	0	0.004672	0	0
C10orf71	118461	broad.mit.edu	37	10	50531128	50531128	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:50531128C>T	uc010qgp.1	+	3	877	c.538C>T	c.(538-540)CCA>TCA	p.P180S		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	180											0						CGCTCCTCTTCCAGAAAACAG	0.522													13	34					0	0	0.013537	0	0
C10orf71	118461	broad.mit.edu	37	10	50532358	50532358	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:50532358A>C	uc010qgp.1	+	3	2107	c.1768A>C	c.(1768-1770)ACT>CCT	p.T590P		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	590											0						CAGCTATCTAACTCTTAGCAC	0.532													8	24					0	0	0.006214	0	0
MBL2	4153	broad.mit.edu	37	10	54530513	54530513	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:54530513C>T	uc001jjt.2	-	2	286	c.221G>A	c.(220-222)GGA>GAA	p.G74E		NM_000242	NP_000233	P11226	MBL2_HUMAN	soluble mannose-binding lectin precursor	74	Collagen-like.				acute-phase response|complement activation, classical pathway|complement activation, lectin pathway|defense response to Gram-positive bacterium|negative regulation of growth of symbiont in host|opsonization|response to oxidative stress	collagen|extracellular space	bacterial cell surface binding|calcium-dependent protein binding|eukaryotic cell surface binding|mannose binding|receptor binding			ovary(1)	1						CCCCAACTTTCCAGGGGGGCC	0.522													24	82					0	0	0.004656	0	0
PCDH15	65217	broad.mit.edu	37	10	55569283	55569283	+	Missense_Mutation	SNP	T	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:55569283T>G	uc010qhs.1	-	37	4937	c.4542A>C	c.(4540-4542)AAA>AAC	p.K1514N	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qht.1_Missense_Mutation_p.K1507N|PCDH15_uc010qhu.1_Missense_Mutation_p.N1526T	NM_001142769	NP_001136241	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CAACCTTTGGTTTTTTAATTT	0.413										HNSCC(58;0.16)			41	116					0	0	0.011902	0	0
ANK3	288	broad.mit.edu	37	10	61819137	61819137	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:61819137C>T	uc001jky.2	-	41	12839	c.12647G>A	c.(12646-12648)CGA>CAA	p.R4216Q	ANK3_uc001jkw.2_Missense_Mutation_p.R840Q|ANK3_uc009xpa.2_Missense_Mutation_p.R840Q|ANK3_uc001jkx.2_Missense_Mutation_p.R884Q|ANK3_uc010qih.1_Missense_Mutation_p.R1707Q|ANK3_uc001jkz.3_Missense_Mutation_p.R1700Q|ANK3_uc001jkv.2_Missense_Mutation_p.R239Q	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4216					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AGTTACTCTTCGAGCTTGAGC	0.408													24	65					0	0	0.006320	0	0
ANK3	288	broad.mit.edu	37	10	61831012	61831012	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:61831012C>T	uc001jky.2	-	37	9819	c.9627G>A	c.(9625-9627)GAG>GAA	p.E3209E	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3209	Poly-Glu.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CCTGTTCCTCCTCCTCTGACT	0.468													16	34					0	0	0.003163	0	0
EGR2	1959	broad.mit.edu	37	10	64573153	64573153	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:64573153G>A	uc010qim.1	-	3	1399	c.1245C>T	c.(1243-1245)CGC>CGT	p.R415R	EGR2_uc010qin.1_Silent_p.R365R|EGR2_uc001jmi.2_Silent_p.R415R|EGR2_uc010qio.1_Silent_p.R428R|EGR2_uc009xph.2_Silent_p.R415R	NM_001136177	NP_001129649	P11161	EGR2_HUMAN	early growth response 2 protein isoform a	415	C2H2-type 3.				fat cell differentiation|protein export from nucleus|transcription from RNA polymerase II promoter	cytoplasm|nucleus	chromatin binding|RNA polymerase II activating transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|ubiquitin protein ligase binding|zinc ion binding			ovary(2)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					TCTTGGTGTGGCGCTTCCTCT	0.617													38	51					0	0	0.019004	0	0
CTNNA3	29119	broad.mit.edu	37	10	67829077	67829077	+	Silent	SNP	T	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:67829077T>G	uc009xpn.1	-	15	2271	c.2148A>C	c.(2146-2148)ACA>ACC	p.T716T	CTNNA3_uc001jmw.2_Silent_p.T716T	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	716					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						TAGTGAAGTCTGTCATCTCCA	0.368													24	54					0	0	0.018920	0	0
CTNNA3	29119	broad.mit.edu	37	10	68979533	68979533	+	Silent	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:68979533A>G	uc009xpn.1	-	6	798	c.675T>C	c.(673-675)TGT>TGC	p.C225C	CTNNA3_uc001jmw.2_Silent_p.C225C|CTNNA3_uc001jmx.3_Silent_p.C225C|CTNNA3_uc009xpo.1_Silent_p.C85C|CTNNA3_uc001jna.2_Silent_p.C237C	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	225					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						AATGCTCCAAACAAGCTGAAC	0.423													17	31					0	0	0.008871	0	0
SRGN	5552	broad.mit.edu	37	10	70863760	70863760	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:70863760C>T	uc001joz.2	+	3	447	c.361C>T	c.(361-363)CAA>TAA	p.Q121*		NM_002727	NP_002718	P10124	SRGN_HUMAN	serglycin precursor	121					apoptosis|biomineral tissue development|maintenance of granzyme B location in T cell secretory granule|maintenance of protease location in mast cell secretory granule|negative regulation of bone mineralization|negative regulation of cytokine secretion|platelet activation|platelet degranulation|protein maturation by peptide bond cleavage	extracellular space|mast cell granule|platelet alpha granule lumen					0						ACAGGATTACCAACTAGTAGA	0.512													10	34					0	0	0.008291	0	0
CDH23	64072	broad.mit.edu	37	10	73377123	73377123	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:73377123C>T	uc001jrx.3	+	11	1484	c.1107C>T	c.(1105-1107)CTC>CTT	p.L369L	CDH23_uc001jrw.3_Silent_p.L369L|CDH23_uc009xql.2_Silent_p.L414L	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	369	Cadherin 4.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CCCTTCCACTCTTCATCCAGG	0.582													15	35					0	0	0.003163	0	0
P4HA1	5033	broad.mit.edu	37	10	74806745	74806745	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:74806745G>A	uc010qka.1	-	9	1349	c.1015C>T	c.(1015-1017)CGC>TGC	p.R339C	P4HA1_uc001jtg.2_Missense_Mutation_p.R339C|P4HA1_uc001jth.2_Missense_Mutation_p.R339C|P4HA1_uc010qkb.1_Missense_Mutation_p.R339C|P4HA1_uc001jti.2_RNA	NM_001142595	NP_001136067	P13674	P4HA1_HUMAN	prolyl 4-hydroxylase, alpha I subunit isoform 2	339						endoplasmic reticulum lumen|mitochondrion	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			ovary(1)	1	Prostate(51;0.0198)				Hydralazine(DB01275)|L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	TCATGGAAGCGAATAATACGA	0.373													21	49					0	0	0.016522	0	0
USP54	159195	broad.mit.edu	37	10	75289602	75289602	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:75289602G>A	uc001juo.2	-	13	1913	c.1896C>T	c.(1894-1896)AGC>AGT	p.S632S	USP54_uc001juk.2_5'UTR|USP54_uc001jul.2_5'UTR|USP54_uc001jum.2_RNA|USP54_uc001jun.2_RNA|USP54_uc001jup.2_Silent_p.S632S|USP54_uc010qkl.1_Silent_p.S632S	NM_152586	NP_689799	Q70EL1	UBP54_HUMAN	ubiquitin specific peptidase 54	632					ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity			breast(3)|lung(2)|kidney(1)	6	Prostate(51;0.0112)					TGTACTGGGGGCTTGGTCCAC	0.488											OREG0020266	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	100					0	0	0.012213	0	0
KIAA0913	23053	broad.mit.edu	37	10	75551178	75551178	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:75551178C>T	uc009xrl.2	+	9	1272	c.1240C>T	c.(1240-1242)CAT>TAT	p.H414Y	KIAA0913_uc001jve.2_Missense_Mutation_p.H414Y|KIAA0913_uc001jvf.2_Missense_Mutation_p.H414Y|KIAA0913_uc001jvh.2_RNA|KIAA0913_uc001jvi.2_5'Flank|KIAA0913_uc010qkr.1_5'Flank|KIAA0913_uc001jvj.2_5'Flank	NM_015037	NP_055852	A7E2V4	K0913_HUMAN	hypothetical protein LOC23053	414							zinc ion binding			breast(1)	1	Prostate(51;0.0112)					GGTGGCAGCCCATGCCTGTGC	0.627													18	34					0	0	0.004990	0	0
PPIF	10105	broad.mit.edu	37	10	81111303	81111303	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:81111303C>T	uc001kai.2	+	4	461	c.376C>T	c.(376-378)CCT>TCT	p.P126S	PPIF_uc001kaj.2_Missense_Mutation_p.P126S	NM_005729	NP_005720	P30405	PPIF_HUMAN	peptidylprolyl isomerase F precursor	126	PPIase cyclophilin-type.				protein folding	membrane fraction|mitochondrial matrix	peptidyl-prolyl cis-trans isomerase activity			skin(1)	1	all_cancers(46;0.0893)|Breast(12;8.52e-05)|all_epithelial(25;0.00449)|Prostate(51;0.00985)		Epithelial(14;0.00242)|all cancers(16;0.0069)|Colorectal(32;0.229)		Dimethyl sulfoxide(DB01093)|L-Proline(DB00172)	AAGCCGCTTTCCTGACGAGAA	0.607													13	43					0	0	0.016723	0	0
CDHR1	92211	broad.mit.edu	37	10	85973996	85973996	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:85973996C>T	uc001kcv.2	+	17	2199	c.2199C>T	c.(2197-2199)GTC>GTT	p.V733V	CDHR1_uc001kcw.2_Intron|CDHR1_uc009xst.2_Silent_p.V437V|CDHR1_uc001kcx.2_Silent_p.V47V	NM_033100	NP_149091	Q96JP9	CDHR1_HUMAN	protocadherin 21 precursor	733	Cytoplasmic (Potential).				homophilic cell adhesion		calcium ion binding|receptor activity			ovary(1)	1						CTAACAAGGTCCTGCCAATGC	0.642													20	48					0	0	0.016522	0	0
CEP55	55165	broad.mit.edu	37	10	95276761	95276761	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:95276761T>C	uc009xug.2	+	6	931	c.749T>C	c.(748-750)GTT>GCT	p.V250A	CEP55_uc001kiq.3_Missense_Mutation_p.V250A	NM_001127182	NP_001120654	Q53EZ4	CEP55_HUMAN	centrosomal protein 55kDa	250	Potential.				cell division|mitosis	centriole|cleavage furrow|midbody					0		Colorectal(252;0.207)				GATCTTGAGGTTGAACGACAA	0.363													11	31					0	0	0.008291	0	0
HELLS	3070	broad.mit.edu	37	10	96313987	96313988	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:96313987_96313988GG>AA	uc001kjt.2	+	3	363_364	c.258_259GG>AA	c.(256-261)ATGGAA>ATAAAA	p.86_87ME>IK	HELLS_uc001kjs.2_Missense_Mutation_p.70_71ME>IK|HELLS_uc009xul.2_Missense_Mutation_p.86_87ME>IK|HELLS_uc009xum.2_Missense_Mutation_p.86_87ME>IK|HELLS_uc009xun.2_5'UTR|HELLS_uc009xuo.2_Missense_Mutation_p.86_87ME>IK|HELLS_uc001kju.2_5'UTR|HELLS_uc009xup.2_RNA|HELLS_uc009xuq.2_5'UTR|HELLS_uc009xur.2_RNA	NM_018063	NP_060533	Q9NRZ9	HELLS_HUMAN	helicase, lymphoid-specific	86_87	Potential.				cell division|centromeric heterochromatin formation|lymphocyte proliferation|maintenance of DNA methylation|methylation-dependent chromatin silencing|mitosis|transcription, DNA-dependent	centromeric heterochromatin|nucleus	ATP binding|DNA binding|helicase activity			ovary(1)|kidney(1)	2		Colorectal(252;0.0429)		all cancers(201;2.13e-05)		TGACGAAAATGGAACAGCAACA	0.267													24	75					0	0	0.004672	0	0
CYP2C19	1557	broad.mit.edu	37	10	96602718	96602718	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:96602718C>T	uc010qnz.1	+	7	1086	c.1086C>T	c.(1084-1086)ATC>ATT	p.I362I	CYP2C19_uc010qny.1_Silent_p.I340I	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	362					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	TCGACCTCATCCCCACCAGCC	0.537													21	86					0	0	0.012319	0	0
CYP2C8	1558	broad.mit.edu	37	10	96824697	96824697	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:96824697A>T	uc001kkb.2	-	4	597	c.502T>A	c.(502-504)TTC>ATC	p.F168I	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Missense_Mutation_p.F98I|CYP2C8_uc010qob.1_Missense_Mutation_p.F82I|CYP2C8_uc010qoc.1_Missense_Mutation_p.F66I|CYP2C8_uc010qod.1_Missense_Mutation_p.F82I	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	168					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	CCCAGGATGAAAGTGGGATCA	0.308													14	30					0	0	0.004990	0	0
ZNF518A	9849	broad.mit.edu	37	10	97919527	97919527	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:97919527C>T	uc001klp.2	+	6	4305	c.3448C>T	c.(3448-3450)CCT>TCT	p.P1150S	ZNF518A_uc001klo.1_Missense_Mutation_p.P620S|ZNF518A_uc001klq.2_Missense_Mutation_p.P1150S|ZNF518A_uc001klr.2_Missense_Mutation_p.P1150S	NM_014803	NP_055618	Q6AHZ1	Z518A_HUMAN	zinc finger protein 518	1150					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		AATTTTTAACCCTGTTTTAAA	0.358													13	56					0	0	0.016723	0	0
ABCC2	1244	broad.mit.edu	37	10	101567916	101567916	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:101567916C>T	uc001kqf.2	+	13	1884	c.1745C>T	c.(1744-1746)TCC>TTC	p.S582F		NM_000392	NP_000383	Q92887	MRP2_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP),	582	ABC transmembrane type-1 1.|Extracellular (By similarity).					apical plasma membrane|integral to plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;2.77e-10)|all cancers(201;2.47e-08)	Adenosine triphosphate(DB00171)|Norgestimate(DB00957)|Pravastatin(DB00175)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	GCCTTCACCTCCATTACCCTC	0.483													24	88					0	0	0.018920	0	0
SEC31B	25956	broad.mit.edu	37	10	102249886	102249886	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:102249886G>A	uc001krc.1	-	21	2946	c.2844C>T	c.(2842-2844)GGC>GGT	p.G948G	SEC31B_uc010qpo.1_Silent_p.G947G|SEC31B_uc001krd.1_Silent_p.G485G|SEC31B_uc001krf.1_Intron|SEC31B_uc001kre.1_Intron	NM_015490	NP_056305	Q9NQW1	SC31B_HUMAN	SEC31 homolog B	948	Pro-rich.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane				ovary(1)	1		Colorectal(252;0.117)		Epithelial(162;2.36e-10)|all cancers(201;2.09e-08)		AGACCATGCGGCCGGGACCTA	0.622													21	69					0	0	0.014323	0	0
PPRC1	23082	broad.mit.edu	37	10	103897629	103897629	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:103897629G>A	uc001kum.2	+	2	215	c.176G>A	c.(175-177)GGT>GAT	p.G59D	PPRC1_uc001kun.2_Translation_Start_Site|PPRC1_uc010qqj.1_Missense_Mutation_p.G59D|PPRC1_uc009xxa.2_5'Flank	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	59					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		GAGGAGGCGGGTGATTCTGGC	0.547													3	31					0	0	0.004672	0	0
PPRC1	23082	broad.mit.edu	37	10	103898705	103898705	+	Missense_Mutation	SNP	G	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:103898705G>T	uc001kum.2	+	4	598	c.559G>T	c.(559-561)GGG>TGG	p.G187W	PPRC1_uc001kun.2_Missense_Mutation_p.G67W|PPRC1_uc010qqj.1_Missense_Mutation_p.G187W|PPRC1_uc009xxa.2_5'Flank	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	187					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		TGACCCACTGGGGCCCAGTAC	0.572													17	46					2.35188e-11	2.44833e-11	0.006122	1	0
CYP17A1	1586	broad.mit.edu	37	10	104596869	104596869	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:104596869C>T	uc001kwg.2	-	1	422	c.250G>A	c.(250-252)GAG>AAG	p.E84K		NM_000102	NP_000093	P05093	CP17A_HUMAN	cytochrome P450, family 17	84					androgen biosynthetic process|glucocorticoid biosynthetic process|sex differentiation|xenobiotic metabolic process	endoplasmic reticulum membrane	electron carrier activity|heme binding|oxygen binding|steroid 17-alpha-monooxygenase activity				0		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)	NADH(DB00157)|Progesterone(DB00396)	ATAAGCACCTCCTTGGCCAGC	0.532													15	64					0	0	0.020292	0	0
PDCD11	22984	broad.mit.edu	37	10	105166502	105166502	+	Silent	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:105166502T>C	uc001kwy.1	+	7	912	c.825T>C	c.(823-825)CTT>CTC	p.L275L		NM_014976	NP_055791	Q14690	RRP5_HUMAN	programmed cell death 11	275					mRNA processing|rRNA processing	nucleolus	RNA binding|transcription factor binding			ovary(2)|breast(2)|skin(2)|central_nervous_system(1)	7		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;7.21e-09)|all cancers(201;1.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		GCTGGAACCTTAATAACTTGC	0.388													3	72					0	0	0.009096	0	0
SORCS3	22986	broad.mit.edu	37	10	106974211	106974211	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:106974211T>C	uc001kyi.1	+	18	2614	c.2387T>C	c.(2386-2388)ATT>ACT	p.I796T	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	796	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		TATCGGCGGATTGTGTCCAAC	0.493													19	51					0	0	0.012319	0	0
SORCS3	22986	broad.mit.edu	37	10	107015513	107015513	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:107015513G>A	uc001kyi.1	+	24	3518	c.3291G>A	c.(3289-3291)CTG>CTA	p.L1097L		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	1097	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		AGTTTGAGCTGAAGCCGGGGG	0.448													15	28					0	0	0.008871	0	0
HABP2	3026	broad.mit.edu	37	10	115336971	115336971	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:115336971C>T	uc001lai.3	+	5	497	c.394C>T	c.(394-396)CCC>TCC	p.P132S	HABP2_uc010qrz.1_RNA|HABP2_uc010qry.1_Silent_p.L120L	NM_004132	NP_004123	Q14520	HABP2_HUMAN	hyaluronan binding protein 2 preproprotein	132	EGF-like 2.				cell adhesion|proteolysis	extracellular space	glycosaminoglycan binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.0233)|Breast(234;0.0672)		Epithelial(162;0.00319)|all cancers(201;0.0112)		CCAGAGTCCTCCCTACTACCG	0.522													30	59					0	0	0.007291	0	0
TDRD1	56165	broad.mit.edu	37	10	115961172	115961172	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:115961172C>T	uc001lbg.1	+	5	686	c.533C>T	c.(532-534)TCG>TTG	p.S178L	TDRD1_uc001lbf.2_Missense_Mutation_p.S169L|TDRD1_uc001lbh.1_Missense_Mutation_p.S169L|TDRD1_uc001lbi.1_Missense_Mutation_p.S169L|TDRD1_uc010qsc.1_5'Flank|TDRD1_uc001lbj.2_5'Flank	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	178	MYND-type.				DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		TTTCTAGGATCGCTGAGGTGC	0.458													9	37					0	0	0.010729	0	0
GFRA1	2674	broad.mit.edu	37	10	117849350	117849350	+	Missense_Mutation	SNP	T	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:117849350T>A	uc001lcj.2	-	9	1797	c.1099A>T	c.(1099-1101)ACC>TCC	p.T367S	GFRA1_uc001lci.2_Missense_Mutation_p.T362S|GFRA1_uc009xyr.2_Missense_Mutation_p.T362S	NM_005264	NP_005255	P56159	GFRA1_HUMAN	GDNF family receptor alpha 1 isoform a	367	Poly-Thr.				axon guidance	anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity			ovary(1)|pancreas(1)	2		Lung NSC(174;0.21)		all cancers(201;0.0337)		GCAGTGGTGGTAGTGGCAGTG	0.532													17	29					0	0	0.004990	0	0
HTRA1	5654	broad.mit.edu	37	10	124249077	124249077	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:124249077T>C	uc001lgj.2	+	3	840	c.712T>C	c.(712-714)TAC>CAC	p.Y238H		NM_002775	NP_002766	Q92743	HTRA1_HUMAN	HtrA serine peptidase 1 precursor	238	Serine protease.				proteolysis|regulation of cell growth	extracellular space	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_neural(114;0.0765)|Lung NSC(174;0.133)|all_lung(145;0.163)|Breast(234;0.238)				CGGTGCCACTTACGAAGCCAA	0.498													23	46					0	0	0.014323	0	0
HTRA1	5654	broad.mit.edu	37	10	124266380	124266380	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:124266380C>T	uc001lgj.2	+	4	1079	c.951C>T	c.(949-951)ATC>ATT	p.I317I		NM_002775	NP_002766	Q92743	HTRA1_HUMAN	HtrA serine peptidase 1 precursor	317	Serine protease.				proteolysis|regulation of cell growth	extracellular space	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_neural(114;0.0765)|Lung NSC(174;0.133)|all_lung(145;0.163)|Breast(234;0.238)				TGGACTACATCCAGACCGACG	0.602													16	33					0	0	0.007413	0	0
FANK1	92565	broad.mit.edu	37	10	127693492	127693492	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:127693492G>A	uc001ljh.3	+	7	683	c.579G>A	c.(577-579)GTG>GTA	p.V193V	FANK1_uc009yan.2_Silent_p.V219V|FANK1_uc001lji.2_Silent_p.V187V	NM_145235	NP_660278	Q8TC84	FANK1_HUMAN	fibronectin type III and ankyrin repeat domains	193	ANK 3.					cytoplasm|nucleus				ovary(1)	1		all_lung(145;0.00752)|Lung NSC(174;0.0115)|Colorectal(57;0.0847)|all_neural(114;0.0936)				TAGATGTTGTGAAATATCTCC	0.527													38	109					0	0	0.006230	0	0
MKI67	4288	broad.mit.edu	37	10	129903931	129903932	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:129903931_129903932CC>TT	uc001lke.2	-	13	6367_6368	c.6172_6173GG>AA	c.(6172-6174)GGG>AAG	p.G2058K	MKI67_uc001lkf.2_Missense_Mutation_p.G1698K|MKI67_uc009yav.1_Missense_Mutation_p.G1633K|MKI67_uc009yaw.1_Missense_Mutation_p.G1208K	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	2058	16 X 122 AA approximate repeats.|9.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				CCTCTCCATCCCAGTTCCATAG	0.515													74	189					0	0	0.004672	0	0
MUC5B	727897	broad.mit.edu	37	11	1263670	1263670	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:1263670G>A	uc009ycr.1	+	47	7765	c.7639G>A	c.(7639-7641)GGG>AGG	p.G2547R	MUC5B_uc001ltb.2_Missense_Mutation_p.G1857R	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	1854	7 X Cys-rich subdomain repeats.|Thr-rich.|Cys-rich subdomain 3.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CCTGGAGACGGGGCTGACCTG	0.592													12	36					0	0	0.010729	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1643088	1643088	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:1643088C>T	uc009ycy.1	-	3	461	c.374G>A	c.(373-375)GGG>GAG	p.G125E		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	139	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GCCATAGCCCCCCTTGGAGCC	0.652													32	93					0	0	0.013726	0	0
OR51E2	81285	broad.mit.edu	37	11	4703639	4703639	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:4703639G>A	uc001lzk.2	-	2	547	c.303C>T	c.(301-303)TTC>TTT	p.F101F		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	101	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		CATGAATAAAGAACATCTGGG	0.522													8	38					0	0	0.004482	0	0
OR51F2	119694	broad.mit.edu	37	11	4842629	4842629	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:4842629C>T	uc010qyn.1	+	1	14	c.14C>T	c.(13-15)TCC>TTC	p.S5F		NM_001004753	NP_001004753	Q8NH61	O51F2_HUMAN	olfactory receptor, family 51, subfamily F,	5	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACTGAAACATCCCTGTCTTCT	0.408													18	78					0	0	0.010504	0	0
OR51G2	81282	broad.mit.edu	37	11	4936029	4936029	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:4936029G>A	uc001lzr.1	-	1	865	c.865C>T	c.(865-867)CCT>TCT	p.P289S		NM_001005238	NP_001005238	Q8NGK0	O51G2_HUMAN	olfactory receptor, family 51, subfamily G,	289	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATCACAGGAGGAAAGAGAAGA	0.493													4	12					0	0	0.009096	0	0
HBB	3043	broad.mit.edu	37	11	5247936	5247936	+	Silent	SNP	C	T	T	rs34446260		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:5247936C>T	uc001mae.1	-	2	236	c.186G>A	c.(184-186)AAG>AAA	p.K62K		NM_000518	NP_000509	P68871	HBB_HUMAN	beta globin	62			K -> N (in Hikari).|K -> E (in N-Seatlle).|K -> M (in Bologna; O(2) affinity down).		blood coagulation|hydrogen peroxide catabolic process|nitric oxide transport|positive regulation of cell death|positive regulation of nitric oxide biosynthetic process|protein heterooligomerization|regulation of blood pressure|regulation of blood vessel size	haptoglobin-hemoglobin complex|hemoglobin complex	heme binding|hemoglobin binding|oxygen binding|oxygen transporter activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)	Iron Dextran(DB00893)	TGCCATGAGCCTTCACCTTAG	0.552									Sickle_Cell_Trait				22	73					0	0	0.018920	0	0
UBQLNL	143630	broad.mit.edu	37	11	5537394	5537394	+	Missense_Mutation	SNP	C	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:5537394C>A	uc001maz.3	-	1	563	c.278G>T	c.(277-279)GGC>GTC	p.G93V	HBG2_uc001mak.1_Intron	NM_145053	NP_659490	Q8IYU4	UBQLN_HUMAN	ubiquilin-like	93	Ubiquitin-like.									large_intestine(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.136)		GATGGTGTGGCCATCCATGAT	0.547													9	41					5.50884e-06	5.65888e-06	0.013537	1	0
OR52N2	390077	broad.mit.edu	37	11	5842474	5842474	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:5842474G>A	uc010qzp.1	+	1	909	c.909G>A	c.(907-909)CAG>CAA	p.Q303Q	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	303	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGCAGATTCAGGAAGGTGTAA	0.373													10	40					0	0	0.006214	0	0
OR2D2	120776	broad.mit.edu	37	11	6913605	6913605	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:6913605G>A	uc010rau.1	-	1	127	c.127C>T	c.(127-129)CTG>TTG	p.L43L		NM_003700	NP_003691	Q9H210	OR2D2_HUMAN	olfactory receptor, family 2, subfamily D,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		ATTAGAAGCAGATTTCCAAGC	0.463													6	3					0	0	0.001168	0	0
NLRP10	338322	broad.mit.edu	37	11	7981464	7981464	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:7981464G>A	uc001mfv.1	-	2	1712	c.1695C>T	c.(1693-1695)TTC>TTT	p.F565F		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	565							ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CATACAGGGAGAATTCCAAAT	0.363													17	39					0	0	0.007413	0	0
TUB	7275	broad.mit.edu	37	11	8060574	8060574	+	Missense_Mutation	SNP	C	T	T	rs150936269		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:8060574C>T	uc001mfy.2	+	1	395	c.154C>T	c.(154-156)CGG>TGG	p.R52W	TUB_uc010rbk.1_Intron	NM_003320	NP_003311	P50607	TUB_HUMAN	tubby isoform a	Error:Variant_position_missing_in_P50607_after_alignment					phagocytosis|positive regulation of phagocytosis|response to stimulus	cytoplasm|extracellular region|nucleus|plasma membrane				ovary(1)	1		all_lung(207;6.91e-20)|Lung NSC(207;3.36e-17)		Epithelial(150;1.69e-62)|BRCA - Breast invasive adenocarcinoma(625;8.54e-06)|LUSC - Lung squamous cell carcinoma(625;0.000184)		CCGAAGAGATCGGTAAGCTTT	0.577													10	32					0	0	0.006214	0	0
FLJ46111	283102	broad.mit.edu	37	11	9116811	9116811	+	RNA	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:9116811C>T	uc010rbv.1	+	1		c.902C>T				NR_027713				Homo sapiens cDNA FLJ46111 fis, clone TESTI2034913, moderately similar to Keratin, type II cytoskeletal 8.												0						AGCATCATCCCTGAGGTCAAG	0.572													6	26					0	0	0.001168	0	0
DENND5A	23258	broad.mit.edu	37	11	9168652	9168652	+	Nonsense_Mutation	SNP	C	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:9168652C>A	uc001mhl.2	-	16	3037	c.2782G>T	c.(2782-2784)GAG>TAG	p.E928*	DENND5A_uc001mhk.2_Nonsense_Mutation_p.E271*|DENND5A_uc010rbw.1_Nonsense_Mutation_p.E928*|DENND5A_uc010rbx.1_RNA	NM_015213	NP_056028	Q6IQ26	DEN5A_HUMAN	RAB6 interacting protein 1	928	RUN 1.									liver(1)	1						AGGAACTGCTCCTTCTCGTCA	0.478													27	55					4.87955e-14	5.09171e-14	0.005443	1	0
EIF4G2	1982	broad.mit.edu	37	11	10820827	10820827	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:10820827G>A	uc001mjc.2	-	20	2886	c.2469C>T	c.(2467-2469)CAC>CAT	p.H823H	EIF4G2_uc001mjb.2_Silent_p.H617H|EIF4G2_uc009ygf.2_Silent_p.H617H|EIF4G2_uc001mjd.2_Silent_p.H785H	NM_001418	NP_001409	P78344	IF4G2_HUMAN	eukaryotic translation initiation factor 4	823	W2.				cell cycle arrest|cell death|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			ovary(1)|central_nervous_system(1)	2				all cancers(16;2.8e-07)|Epithelial(150;4.18e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		GTAGATCAACGTGATCATGAA	0.433													9	46					0	0	0.008291	0	0
ABCC8	6833	broad.mit.edu	37	11	17428582	17428582	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:17428582G>A	uc001mnc.2	-	25	3141	c.3015C>T	c.(3013-3015)TCC>TCT	p.S1005S		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	1005	Helical; Name=12; (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	TGCCGGCGGAGGACAGGTACT	0.617													70	197					0	0	0.014410	0	0
MRGPRX2	117194	broad.mit.edu	37	11	19077861	19077861	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:19077861G>A	uc001mph.2	-	2	177	c.89C>T	c.(88-90)ACC>ATC	p.T30I		NM_054030	NP_473371	Q96LB1	MRGX2_HUMAN	MAS-related GPR, member X2	30	Extracellular (Potential).				sensory perception of pain|sleep	plasma membrane	G-protein coupled receptor activity|neuropeptide binding			ovary(1)	1						CGGGATCAGGGTCTCCTTGCC	0.562													85	166					0	0	0.014410	0	0
E2F8	79733	broad.mit.edu	37	11	19246337	19246337	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:19246337G>A	uc001mpm.2	-	13	2994	c.2472C>T	c.(2470-2472)TTC>TTT	p.F824F	E2F8_uc009yhv.2_RNA|E2F8_uc001mpn.3_Silent_p.F824F	NM_024680	NP_078956	A0AVK6	E2F8_HUMAN	E2F family member 8	824					cell cycle	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						CTGGGGTACGGAAGAAACTTT	0.488													10	62					0	0	0.008291	0	0
LIN7C	55327	broad.mit.edu	37	11	27528327	27528327	+	Splice_Site	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:27528327G>A	uc001mrl.2	-	1	1	c.-26_splice	c.e1-1		LIN7C_uc009yii.2_Splice_Site|BDNFOS_uc001mrm.2_5'Flank|BDNFOS_uc009yij.2_5'Flank|BDNFOS_uc009yik.2_5'Flank|BDNFOS_uc009yil.2_5'Flank|BDNFOS_uc001mrp.2_5'Flank|BDNFOS_uc009yim.2_5'Flank|BDNFOS_uc009yin.2_5'Flank|BDNFOS_uc009yio.2_5'Flank|BDNFOS_uc009yip.2_5'Flank|BDNFOS_uc001mrn.2_5'Flank|BDNFOS_uc009yiq.2_5'Flank|BDNFOS_uc001mro.2_5'Flank|BDNFOS_uc009yir.2_5'Flank|BDNFOS_uc009yis.2_5'Flank|BDNFOS_uc009yit.2_5'Flank|BDNFOS_uc009yiu.2_5'Flank|BDNFOS_uc009yiv.2_5'Flank|BDNFOS_uc009yiw.2_5'Flank|BDNFOS_uc009yix.2_5'Flank|BDNFOS_uc009yiy.2_5'Flank|BDNFOS_uc009yiz.2_5'Flank|BDNFOS_uc001mrq.3_5'Flank|BDNFOS_uc001mrr.3_5'Flank|BDNFOS_uc009yja.2_5'Flank|BDNFOS_uc009yjb.2_5'Flank	NM_018362	NP_060832	Q9NUP9	LIN7C_HUMAN	lin-7 homolog C						exocytosis|protein transport	basolateral plasma membrane|postsynaptic density|postsynaptic membrane|synaptosome|tight junction					0						AGACCCACAGGAAATGACGAC	0.637													20	54					0	0	0.014323	0	0
QSER1	79832	broad.mit.edu	37	11	32955554	32955554	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:32955554C>T	uc001mty.2	+	4	2630	c.2363C>T	c.(2362-2364)CCT>CTT	p.P788L	QSER1_uc001mtz.1_Missense_Mutation_p.P549L|QSER1_uc001mua.2_Missense_Mutation_p.P293L	NM_001076786	NP_001070254	Q2KHR3	QSER1_HUMAN	glutamine and serine rich 1	788	Gln-rich.									ovary(3)|central_nervous_system(2)|skin(1)	6	Breast(20;0.158)					CAACTCCATCCTCAAAATTCT	0.388													9	22					0	0	0.006214	0	0
QSER1	79832	broad.mit.edu	37	11	32956278	32956278	+	Silent	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:32956278T>C	uc001mty.2	+	4	3354	c.3087T>C	c.(3085-3087)GGT>GGC	p.G1029G	QSER1_uc001mtz.1_Silent_p.G790G|QSER1_uc001mua.2_Silent_p.G534G	NM_001076786	NP_001070254	Q2KHR3	QSER1_HUMAN	glutamine and serine rich 1	1029										ovary(3)|central_nervous_system(2)|skin(1)	6	Breast(20;0.158)					CCTTAGGGGGTGACGACAGTG	0.423													5	9					0	0	0.001984	0	0
HIPK3	10114	broad.mit.edu	37	11	33350174	33350174	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:33350174G>A	uc001mul.1	+	3	1486	c.1216G>A	c.(1216-1218)GAT>AAT	p.D406N	HIPK3_uc001mum.1_Missense_Mutation_p.D406N|HIPK3_uc009yjv.1_Missense_Mutation_p.D406N|HIPK3_uc009yjw.1_RNA	NM_005734	NP_005725	Q9H422	HIPK3_HUMAN	homeodomain interacting protein kinase 3 isoform	406	Protein kinase.				anti-apoptosis|apoptosis|negative regulation of JUN kinase activity|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm	ATP binding|protein serine/threonine kinase activity			large_intestine(1)|skin(1)|stomach(1)|ovary(1)|pancreas(1)	5						CTTGGAGTATGATCAGGTAAC	0.403													7	41					0	0	0.001984	0	0
FBXO3	26273	broad.mit.edu	37	11	33790446	33790446	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:33790446G>A	uc001muz.2	-	3	337	c.309C>T	c.(307-309)CTC>CTT	p.L103L	FBXO3_uc001muy.2_5'UTR|FBXO3_uc009ykb.2_RNA|FBXO3_uc001mva.1_Silent_p.L103L|FBXO3_uc001mvb.1_Silent_p.L98L|FBXO3_uc010rek.1_RNA	NM_012175	NP_036307	Q9UK99	FBX3_HUMAN	F-box only protein 3 isoform 1	103					proteolysis	nucleus	ubiquitin-protein ligase activity			pancreas(1)	1		Lung NSC(402;0.0804)		BRCA - Breast invasive adenocarcinoma(625;0.00315)|Lung(977;0.00488)|LUSC - Lung squamous cell carcinoma(625;0.008)		AATATTTCTTGAGATCATCCC	0.403													46	90					0	0	0.014410	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136712	40136712	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:40136712G>A	uc001mxa.1	-	2	3095	c.1131C>T	c.(1129-1131)GCC>GCT	p.A377A	LRRC4C_uc001mxc.1_Silent_p.A373A|LRRC4C_uc001mxd.1_Silent_p.A373A|LRRC4C_uc001mxb.1_Silent_p.A373A	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	377	Ig-like C2-type.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				GGGATGTGGAGGCCCGACATT	0.512													26	45					0	0	0.021523	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136877	40136877	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:40136877C>T	uc001mxa.1	-	2	2930	c.966G>A	c.(964-966)TCG>TCA	p.S322S	LRRC4C_uc001mxc.1_Silent_p.S318S|LRRC4C_uc001mxd.1_Silent_p.S318S|LRRC4C_uc001mxb.1_Silent_p.S318S	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	322	LRRCT.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				AAGCTGTGTTCGAGGGGGCCA	0.493													10	25					0	0	0.006214	0	0
TTC17	55761	broad.mit.edu	37	11	43413392	43413392	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:43413392C>T	uc001mxi.2	+	5	567	c.553C>T	c.(553-555)CTT>TTT	p.L185F	TTC17_uc001mxh.2_Missense_Mutation_p.L185F|TTC17_uc010rfj.1_Missense_Mutation_p.L128F	NM_018259	NP_060729	Q96AE7	TTC17_HUMAN	tetratricopeptide repeat domain 17	185							binding			ovary(5)	5						GAGAGTTAATCTTTCTGCACC	0.353													24	57					0	0	0.021523	0	0
SPI1	6688	broad.mit.edu	37	11	47399883	47399883	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:47399883C>T	uc001nfc.1	-	1	245	c.22G>A	c.(22-24)GAA>AAA	p.E8K	SPI1_uc001nfb.1_Missense_Mutation_p.E8K|SLC39A13_uc001nfd.2_Intron|SPI1_uc009ylp.1_Missense_Mutation_p.E2K	NM_003120	NP_003111	P17947	SPI1_HUMAN	hematopoietic transcription factor PU.1 isoform	8					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|regulation of erythrocyte differentiation	nucleus	protein binding|RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)	2				Lung(87;0.0967)		GGAAACCCTTCCATTTTGCAC	0.687													4	19					0	0	0.009096	0	0
AGBL2	79841	broad.mit.edu	37	11	47701582	47701582	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:47701582G>A	uc001ngg.2	-	12	2059	c.1959C>T	c.(1957-1959)TCC>TCT	p.S653S	AGBL2_uc001ngf.2_RNA|AGBL2_uc010rhq.1_Silent_p.S615S|AGBL2_uc001ngh.1_Silent_p.S597S	NM_024783	NP_079059	Q5U5Z8	CBPC2_HUMAN	carboxypeptidase 2, cytosolic	653					proteolysis	cytosol	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2						GATAACCTAAGGACTTCAGAT	0.348													14	53					0	0	0.004007	0	0
NUP160	23279	broad.mit.edu	37	11	47837085	47837085	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:47837085G>A	uc001ngm.2	-	13	1717	c.1632C>T	c.(1630-1632)CAC>CAT	p.H544H	NUP160_uc009ylw.2_RNA	NM_015231	NP_056046	Q12769	NU160_HUMAN	nucleoporin 160kDa	544					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7						GGGCAAGAGGGTGAGAGAGGG	0.428													30	77					0	0	0.013726	0	0
LOC440040	440040	broad.mit.edu	37	11	49598415	49598415	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:49598415G>A	uc010rhy.1	+	2	1006	c.528G>A	c.(526-528)GTG>GTA	p.V176V	LOC440040_uc009ymb.2_Silent_p.V176V	NR_027044				SubName: Full=cDNA FLJ60249, highly similar to Metabotropic glutamate receptor 5;												0						TGGACATAGTGAAGAGGTACA	0.428													9	20					0	0	0.006214	0	0
OR5W2	390148	broad.mit.edu	37	11	55681905	55681905	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:55681905C>T	uc010rir.1	-	1	154	c.154G>A	c.(154-156)GAT>AAT	p.D52N		NM_001001960	NP_001001960	Q8NH69	OR5W2_HUMAN	olfactory receptor, family 5, subfamily W,	52	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AGTTGGTAATCCATTCTGATT	0.383													9	32					0	0	0.004482	0	0
OR5I1	10798	broad.mit.edu	37	11	55703536	55703536	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:55703536G>A	uc010ris.1	-	1	341	c.341C>T	c.(340-342)TCC>TTC	p.S114F		NM_006637	NP_006628	Q13606	OR5I1_HUMAN	olfactory receptor, family 5, subfamily I,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CAGGATGAAGGATTCTGTATC	0.438													4	4					0	0	0.009096	0	0
OR5M1	390168	broad.mit.edu	37	11	56380060	56380060	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:56380060C>T	uc001nja.1	-	1	919	c.919G>A	c.(919-921)GGA>AGA	p.G307R		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						AAGGATTTTCCCCTAATCATT	0.378													12	34					0	0	0.016723	0	0
LRRC55	219527	broad.mit.edu	37	11	56950032	56950032	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:56950032T>C	uc001njl.1	+	1	812	c.665T>C	c.(664-666)CTG>CCG	p.L222P		NM_001005210	NP_001005210	Q6ZSA7	LRC55_HUMAN	leucine rich repeat containing 55	192	LRR 5.					integral to membrane					0						TTCCTCAGCCTGGAGGCTCTT	0.652													37	74					0	0	0.005524	0	0
SLC43A1	8501	broad.mit.edu	37	11	57263631	57263631	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:57263631A>G	uc001nkk.2	-	7	683	c.565T>C	c.(565-567)TAC>CAC	p.Y189H	SLC43A1_uc001nkl.2_Missense_Mutation_p.Y189H	NM_003627	NP_003618	O75387	LAT3_HUMAN	solute carrier family 43, member 1	189					cellular nitrogen compound metabolic process|ion transport	integral to plasma membrane	neutral amino acid transmembrane transporter activity				0						CCGGCATCGTAGATCAGCTGT	0.597													12	27					0	0	0.020292	0	0
SMTNL1	219537	broad.mit.edu	37	11	57310133	57310133	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:57310133G>A	uc009ymh.1	+	2	72	c.72G>A	c.(70-72)GGG>GGA	p.G24G		NM_001105565	NP_001099035	E9PPJ3	E9PPJ3_HUMAN	smoothelin-like 1	6										ovary(1)	1						AGAAGGAAGGGAAGCTCTCTG	0.552													6	26					0	0	0.001984	0	0
OR5B3	441608	broad.mit.edu	37	11	58170217	58170217	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:58170217G>A	uc010rkf.1	-	1	666	c.666C>T	c.(664-666)ACC>ACT	p.T222T		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	222	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TCTTTAGGATGGTGATAAAAA	0.383													5	7					0	0	0.014758	0	0
GLYATL1	92292	broad.mit.edu	37	11	58722355	58722355	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:58722355G>A	uc001nnf.2	+	6	675	c.299G>A	c.(298-300)AGA>AAA	p.R100K	uc001nng.1_Intron|GLYATL1_uc001nnh.1_Missense_Mutation_p.R131K|GLYATL1_uc001nni.1_Missense_Mutation_p.R100K|GLYATL1_uc001nnj.1_Missense_Mutation_p.R100K			Q969I3	GLYL1_HUMAN	SubName: Full=Glycine acyltransferase family-C; SubName: Full=Glycine-N-acyltransferase-like 1, isoform CRA_a;	100						mitochondrion	glycine N-acyltransferase activity			ovary(1)	1					Glycine(DB00145)	TGGAAACAGAGACTCCAAATC	0.284													8	13					0	0	0.003080	0	0
OR4D9	390199	broad.mit.edu	37	11	59282709	59282709	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:59282709G>A	uc010rkv.1	+	1	324	c.324G>A	c.(322-324)GGG>GGA	p.G108G		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	108	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACCTTCTGGGGGGAGCAGACG	0.488													17	64					0	0	0.004990	0	0
OR4D9	390199	broad.mit.edu	37	11	59283138	59283138	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:59283138C>T	uc010rkv.1	+	1	753	c.753C>T	c.(751-753)TTC>TTT	p.F251F		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCCTGCATTTCGTGCCCTGCA	0.562													66	154					0	0	0.014410	0	0
OSBP	5007	broad.mit.edu	37	11	59368079	59368079	+	Missense_Mutation	SNP	T	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:59368079T>A	uc001noc.1	-	7	1681	c.1201A>T	c.(1201-1203)ACC>TCC	p.T401S	OSBP_uc009ymr.1_RNA	NM_002556	NP_002547	P22059	OSBP1_HUMAN	oxysterol binding protein	401					lipid transport	Golgi membrane	oxysterol binding			large_intestine(1)	1		all_epithelial(135;0.000236)		BRCA - Breast invasive adenocarcinoma(625;0.00607)|LUSC - Lung squamous cell carcinoma(625;0.207)		TCCTTTTTGGTCTCCTCCAGC	0.418													16	38					0	0	0.004990	0	0
SLC15A3	51296	broad.mit.edu	37	11	60711223	60711223	+	Missense_Mutation	SNP	C	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:60711223C>A	uc001nqn.2	-	3	1168	c.934G>T	c.(934-936)GTG>TTG	p.V312L	SLC15A3_uc001nqo.2_Missense_Mutation_p.V312L	NM_016582	NP_057666	Q8IY34	S15A3_HUMAN	solute carrier family 15, member 3	312	Helical; (Potential).				oligopeptide transport|protein transport	integral to membrane|lysosomal membrane	peptide:hydrogen symporter activity				0						TTCACCAGCACCTGGAAGTTG	0.617													6	45					0.00116845	0.00119469	0.001168	1	0
FEN1	2237	broad.mit.edu	37	11	61563517	61563517	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:61563517C>T	uc001nsg.2	+	2	1056	c.684C>T	c.(682-684)ATC>ATT	p.I228I		NM_004111	NP_004102	P39748	FEN1_HUMAN	flap structure-specific endonuclease 1	228	I-domain.				base-excision repair|DNA replication, removal of RNA primer|double-strand break repair|phosphatidylinositol-mediated signaling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|UV protection	mitochondrion|nucleolus|nucleoplasm	5'-3' exonuclease activity|5'-flap endonuclease activity|damaged DNA binding|double-stranded DNA binding|double-stranded DNA specific exodeoxyribonuclease activity|metal ion binding|protein binding|ribonuclease H activity			ovary(1)	1						ATCTGTGCATCCTGCTAGGCA	0.567								Direct_reversal_of_damage|Editing_and_processing_nucleases					20	43					0	0	0.010504	0	0
SLC22A10	387775	broad.mit.edu	37	11	63069867	63069867	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:63069867C>T	uc009yor.2	+	7	1345	c.1137C>T	c.(1135-1137)TTC>TTT	p.F379F	SLC22A10_uc010rmo.1_Intron|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_Silent_p.F219F	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	379	Helical; (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						GCAACATTTTCCTGTTGCAGG	0.408													4	16					0	0	0.014758	0	0
HRASLS5	117245	broad.mit.edu	37	11	63233660	63233660	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:63233660G>A	uc001nwy.2	-	5	843	c.669C>T	c.(667-669)ATC>ATT	p.I223I	HRASLS5_uc001nwz.2_Silent_p.I213I|HRASLS5_uc010rmq.1_Silent_p.I223I|HRASLS5_uc009yos.2_RNA	NM_054108	NP_473449	Q96KN8	HRSL5_HUMAN	HRAS-like suppressor family, member 5 isoform 1	223										ovary(1)	1						TGTACTGCACGATCTTGTTGA	0.517													19	54					0	0	0.010504	0	0
CCDC88B	283234	broad.mit.edu	37	11	64120576	64120576	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:64120576G>A	uc001nzy.2	+	21	3595	c.3551G>A	c.(3550-3552)GGT>GAT	p.G1184D	CCDC88B_uc009ypo.1_Missense_Mutation_p.G1181D|CCDC88B_uc001oaa.2_Missense_Mutation_p.G336D|CCDC88B_uc001oab.1_Missense_Mutation_p.G15D|CCDC88B_uc001oac.2_5'Flank	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	1184	Potential.				microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						GAGCTGCAGGGTGAACGCGGG	0.687													5	15					0	0	0.014758	0	0
CDC42EP2	10435	broad.mit.edu	37	11	65088540	65088540	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:65088540C>T	uc001odl.2	+	2	621	c.171C>T	c.(169-171)TTC>TTT	p.F57F		NM_006779	NP_006770	O14613	BORG1_HUMAN	Cdc42 effector protein 2	57					actin filament organization|positive regulation of actin filament polymerization|positive regulation of pseudopodium assembly|regulation of cell shape	cytoplasm|cytoskeleton|endomembrane system|plasma membrane	GTP-Rho binding|Rho GTPase activator activity				0						ACATCTCCTTCCTGCAGGGCA	0.627													23	62					0	0	0.004656	0	0
CST6	1474	broad.mit.edu	37	11	65780821	65780821	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:65780821C>T	uc001ogr.2	+	3	454	c.400C>T	c.(400-402)CCC>TCC	p.P134S	CST6_uc001ogs.1_3'UTR	NM_001323	NP_001314	Q15828	CYTM_HUMAN	cystatin M precursor	134					anatomical structure morphogenesis	extracellular region	cysteine-type endopeptidase inhibitor activity			ovary(1)	1						CCTTGTGGTTCCCTGGCAGAA	0.587													29	90					0	0	0.010818	0	0
ACTN3	89	broad.mit.edu	37	11	66321524	66321524	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:66321524G>A	uc001oio.1	+	4	409	c.391G>A	c.(391-393)GAC>AAC	p.D131N	ACTN3_uc010rpi.1_RNA	NM_001104	NP_001095	Q08043	ACTN3_HUMAN	actinin, alpha 3	131	Actin-binding.|CH 1.				focal adhesion assembly|muscle filament sliding|regulation of apoptosis	actin filament|cytosol|focal adhesion|pseudopodium	actin binding|calcium ion binding|integrin binding|protein homodimerization activity|structural constituent of muscle				0						AGAGATTGTTGACGGGAACCT	0.552													17	42					0	0	0.006122	0	0
C11orf80	79703	broad.mit.edu	37	11	66563829	66563829	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:66563829C>T	uc001ojf.2	+	6	718	c.711C>T	c.(709-711)CAC>CAT	p.H237H	C11orf80_uc001ojg.2_Silent_p.H3H|C11orf80_uc001ojh.2_Silent_p.H3H|C11orf80_uc001oji.2_Silent_p.H3H|C11orf80_uc010rpk.1_Silent_p.H71H	NM_024650	NP_078926	Q8N6T0	CK080_HUMAN	hypothetical protein LOC79703	82											0						TCATGGTGCACCCTAAGGTAA	0.358													4	19					0	0	0.001168	0	0
PITPNM1	9600	broad.mit.edu	37	11	67260440	67260440	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:67260440C>T	uc001olx.2	-	22	3625	c.3436G>A	c.(3436-3438)GGC>AGC	p.G1146S	PITPNM1_uc001olw.2_Missense_Mutation_p.G428S|PITPNM1_uc001oly.2_Missense_Mutation_p.G1146S|PITPNM1_uc001olz.2_Missense_Mutation_p.G1145S	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	1146					brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						ACGGCACGGCCCACGATGTAG	0.652													41	95					0	0	0.008740	0	0
CPT1A	1374	broad.mit.edu	37	11	68529012	68529012	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:68529012G>A	uc001oog.3	-	16	2189	c.2019C>T	c.(2017-2019)TTC>TTT	p.F673F	CPT1A_uc001oof.3_Silent_p.F673F|CPT1A_uc009ysj.2_Intron	NM_001876	NP_001867	P50416	CPT1A_HUMAN	carnitine palmitoyltransferase 1A liver isoform	673	Cytoplasmic (Potential).				carnitine shuttle|fatty acid beta-oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			skin(2)	2	Esophageal squamous(3;3.28e-14)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.142)		L-Carnitine(DB00583)|Perhexiline(DB01074)	CTTCCTTAAGGAAAGGGGACT	0.443													30	112					0	0	0.009535	0	0
PPFIA1	8500	broad.mit.edu	37	11	70185379	70185379	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:70185379C>T	uc001opo.2	+	14	1872	c.1674C>T	c.(1672-1674)GGC>GGT	p.G558G	PPFIA1_uc001opn.1_Silent_p.G558G|PPFIA1_uc001opp.2_RNA|PPFIA1_uc001opq.1_RNA	NM_003626	NP_003617	Q13136	LIPA1_HUMAN	PTPRF interacting protein alpha 1 isoform b	558					cell-matrix adhesion	cytoplasm	protein binding|signal transducer activity			lung(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(2;1.04e-44)|LUSC - Lung squamous cell carcinoma(11;1.46e-14)|STAD - Stomach adenocarcinoma(18;0.0513)			CACAGAAAGGCCGGCTGGCAG	0.572													18	50					0	0	0.008871	0	0
CTTN	2017	broad.mit.edu	37	11	70275245	70275245	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:70275245G>A	uc001opv.3	+	14	1322	c.1116G>A	c.(1114-1116)GAG>GAA	p.E372E	CTTN_uc001opu.2_Silent_p.E335E|CTTN_uc001opw.3_Silent_p.E335E|CTTN_uc010rqm.1_Silent_p.E56E|CTTN_uc001opx.2_Silent_p.E56E	NM_005231	NP_005222	Q14247	SRC8_HUMAN	cortactin isoform a	372						cell cortex|cytoskeleton|lamellipodium|ruffle|soluble fraction	protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(2;4.34e-41)|LUSC - Lung squamous cell carcinoma(11;1.51e-13)|STAD - Stomach adenocarcinoma(18;0.0513)	Lung(977;0.0234)|LUSC - Lung squamous cell carcinoma(976;0.133)		CGGAGGCGGAGAGAGCCCAGC	0.597													10	48					0	0	0.006214	0	0
POLD3	10714	broad.mit.edu	37	11	74329644	74329644	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:74329644C>T	uc001ovf.1	+	6	530	c.455C>T	c.(454-456)TCC>TTC	p.S152F	POLD3_uc009yua.1_Missense_Mutation_p.S46F	NM_006591	NP_006582	Q15054	DPOD3_HUMAN	DNA-directed DNA polymerase delta 3	152					base-excision repair|DNA strand elongation involved in DNA replication|DNA synthesis involved in DNA repair|mismatch repair|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm	DNA-directed DNA polymerase activity|protein binding			kidney(2)|ovary(1)	3	Breast(11;3.21e-06)					TCTTCGTCTTCCAAAAAGTTT	0.463													29	75					0	0	0.007291	0	0
MYO7A	4647	broad.mit.edu	37	11	76885844	76885844	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:76885844G>A	uc001oyb.2	+	17	2250	c.1978G>A	c.(1978-1980)GGA>AGA	p.G660R	MYO7A_uc010rsl.1_Missense_Mutation_p.G660R|MYO7A_uc010rsm.1_Missense_Mutation_p.G649R|MYO7A_uc001oyc.2_Missense_Mutation_p.G660R|MYO7A_uc001oyd.2_5'UTR	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	660	Myosin head-like.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						GCGGTACTCAGGAATGATGGA	0.632													7	15					0	0	0.001984	0	0
CCDC83	220047	broad.mit.edu	37	11	85610023	85610023	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:85610023C>T	uc001pbh.1	+	7	1149	c.637C>T	c.(637-639)CTA>TTA	p.L213L	CCDC83_uc001pbg.1_Silent_p.L213L|CCDC83_uc001pbi.1_RNA|CCDC83_uc001pbj.1_Silent_p.L114L	NM_173556	NP_775827	Q8IWF9	CCD83_HUMAN	coiled-coil domain containing 83	213										skin(1)	1		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				GGGCAGTTATCTAGAGATCTG	0.343													13	32					0	0	0.004007	0	0
HEPHL1	341208	broad.mit.edu	37	11	93815599	93815599	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:93815599G>A	uc001pep.2	+	10	1889	c.1732G>A	c.(1732-1734)GAG>AAG	p.E578K	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	578	Plastocyanin-like 4.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				AATAGACAAGGAGTTTTACCT	0.353													9	12					0	0	0.008291	0	0
KIAA1377	57562	broad.mit.edu	37	11	101828931	101828931	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:101828931C>T	uc001pgm.2	+	5	809	c.539C>T	c.(538-540)TCA>TTA	p.S180L	KIAA1377_uc001pgn.2_Missense_Mutation_p.S136L|KIAA1377_uc010run.1_5'UTR|KIAA1377_uc009yxa.1_5'UTR	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	180							protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		TCCGCATTATCAAAAAATGAT	0.328													67	162					0	0	0.014410	0	0
CASP1	834	broad.mit.edu	37	11	104900534	104900535	+	Missense_Mutation	DNP	CC	TT	TT	rs45617533	byFrequency	TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:104900534_104900535CC>TT	uc010rve.1	-	6	736_737	c.719_720GG>AA	c.(718-720)CGG>CAA	p.R240Q	CASP1_uc001pig.2_Missense_Mutation_p.R147Q|CASP1_uc001pik.2_Missense_Mutation_p.R203Q|CASP1_uc010rvf.1_Missense_Mutation_p.R147Q|CASP1_uc010rvg.1_Missense_Mutation_p.R219Q|CASP1_uc010rvh.1_Missense_Mutation_p.R147Q|CASP1_uc010rvi.1_Intron|CASP1_uc001pim.3_Missense_Mutation_p.R240Q|CASP1_uc009yxi.2_Missense_Mutation_p.R219Q|CASP1_uc010rvj.1_Missense_Mutation_p.R240Q|CASP1_uc009yxj.2_Missense_Mutation_p.R85Q|CASP1_uc010rvk.1_Missense_Mutation_p.R201Q	NM_033292	NP_150634	P29466	CASP1_HUMAN	caspase 1 isoform alpha precursor	240					cellular response to mechanical stimulus|cellular response to organic substance|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteolysis|signal transduction	cytosol	caspase activator activity|cysteine-type endopeptidase activity|protein binding			ovary(2)	2		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000525)|Epithelial(105;0.0128)|all cancers(92;0.0482)	Minocycline(DB01017)|Penicillamine(DB00859)	AAATGCCTTCCCGAATACCATG	0.465													12	32					0	0	0.004672	0	0
NPAT	4863	broad.mit.edu	37	11	108062855	108062855	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:108062855A>T	uc001pjz.3	-	4	382	c.280T>A	c.(280-282)TCT>ACT	p.S94T	NPAT_uc001pka.2_5'Flank	NM_002519	NP_002510	Q14207	NPAT_HUMAN	nuclear protein,  ataxia-telangiectasia locus	94	Interaction with MIZF.				positive regulation of transcription, DNA-dependent|regulation of transcription involved in G1/S phase of mitotic cell cycle	Cajal body	protein C-terminus binding|protein N-terminus binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			ovary(2)	2		all_cancers(61;2.31e-10)|all_epithelial(67;1.11e-06)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		BRCA - Breast invasive adenocarcinoma(274;1.05e-05)|Epithelial(105;3.01e-05)|all cancers(92;0.000816)|Colorectal(284;0.116)		CTGATCTGAGAAAGTGTATGG	0.333													20	61					0	0	0.018920	0	0
BCO2	83875	broad.mit.edu	37	11	112084579	112084579	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:112084579G>A	uc001pnf.2	+	9	1444	c.1327G>A	c.(1327-1329)GGA>AGA	p.G443R	BCO2_uc001pne.1_Missense_Mutation_p.G270R|BCO2_uc001png.2_Missense_Mutation_p.G370R|BCO2_uc001pnh.2_Missense_Mutation_p.G409R|BCO2_uc010rwt.1_Missense_Mutation_p.G338R|BCO2_uc009yyn.2_Missense_Mutation_p.G409R|BCO2_uc001pni.2_Missense_Mutation_p.G409R	NM_031938	NP_114144	Q9BYV7	BCDO2_HUMAN	beta-carotene dioxygenase 2 isoform a	443					carotene metabolic process|retinal metabolic process|retinoic acid metabolic process		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						ACAGGCTGATGGAACGGTATG	0.398													40	94					0	0	0.009718	0	0
CADM1	23705	broad.mit.edu	37	11	115099882	115099882	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:115099882G>A	uc001ppi.3	-	5	801	c.672C>T	c.(670-672)CAC>CAT	p.H224H	CADM1_uc001ppf.3_Silent_p.H224H|CADM1_uc001ppk.3_Silent_p.H224H|CADM1_uc001ppj.3_Silent_p.H224H|CADM1_uc001ppl.2_Silent_p.H224H	NM_014333	NP_055148	Q9BY67	CADM1_HUMAN	immunoglobulin superfamily, member 4D isoform 1	224	Ig-like C2-type 1.|Extracellular (Potential).				adherens junction organization|apoptosis|cell differentiation|cell junction assembly|cell recognition|detection of stimulus|heterophilic cell-cell adhesion|homophilic cell adhesion|multicellular organismal development|positive regulation of cytokine secretion|spermatogenesis|susceptibility to natural killer cell mediated cytotoxicity	basolateral plasma membrane|cell-cell junction|integral to membrane	PDZ domain binding|protein C-terminus binding|protein homodimerization activity|receptor binding			ovary(2)	2	all_hematologic(175;0.0628)	all_cancers(61;2.98e-14)|all_epithelial(67;2.64e-08)|all_hematologic(158;0.000154)|Melanoma(852;0.000952)|Acute lymphoblastic leukemia(157;0.00101)|Breast(348;0.0102)|Medulloblastoma(222;0.0429)|Prostate(24;0.145)|all_neural(223;0.237)		BRCA - Breast invasive adenocarcinoma(274;5.01e-06)|Epithelial(105;0.000305)|all cancers(92;0.00303)		TGACCGCAGGGTGCTCCACCT	0.532													10	17					0	0	0.006214	0	0
CBL	867	broad.mit.edu	37	11	119149242	119149242	+	Missense_Mutation	SNP	C	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:119149242C>A	uc001pwe.2	+	9	1388	c.1250C>A	c.(1249-1251)CCT>CAT	p.P417H		NM_005188	NP_005179	P22681	CBL_HUMAN	Cas-Br-M (murine) ecotropic retroviral	417	Asp/Glu-rich (acidic).|RING-type.				epidermal growth factor receptor signaling pathway|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of receptor-mediated endocytosis	cytosol|nucleus	calcium ion binding|sequence-specific DNA binding transcription factor activity|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding	p.P417L(2)|p.P417A(2)|p.E366_K477del(1)|p.G397_I429del(1)|p.P417S(1)|p.P417R(1)		haematopoietic_and_lymphoid_tissue(135)|lung(10)|central_nervous_system(2)|ovary(1)|breast(1)	149		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.92e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.000784)		CAGGGCTGTCCTTTCTGCCGA	0.428									CBL_gene-associated_Juvenile_Myelomonocytic_Leukemia_and_Developmental_Anomalies|Noonan_syndrome				22	54					7.16444e-05	7.33674e-05	0.021523	1	0
OR4D5	219875	broad.mit.edu	37	11	123810592	123810592	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:123810592C>T	uc001pzk.1	+	1	269	c.269C>T	c.(268-270)CCT>CTT	p.P90L		NM_001001965	NP_001001965	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D,	90	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		TCAGGCAACCCTACCATTTCC	0.473													28	34					0	0	0.004656	0	0
OR10G8	219869	broad.mit.edu	37	11	123900864	123900864	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:123900864G>A	uc001pzp.1	+	1	535	c.535G>A	c.(535-537)GAT>AAT	p.D179N		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	179	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		CTATTTGTGTGATGCACCGCC	0.527													30	62					0	0	0.006230	0	0
OR8D2	283160	broad.mit.edu	37	11	124189248	124189248	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:124189248G>A	uc010sah.1	-	1	846	c.846C>T	c.(844-846)ATC>ATT	p.I282I		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		TCAGCATGGGGATTATTGTGA	0.423													9	15					0	0	0.008291	0	0
OR8D2	283160	broad.mit.edu	37	11	124189829	124189829	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:124189829C>T	uc010sah.1	-	1	265	c.265G>A	c.(265-267)GAG>AAG	p.E89K		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		ATAATGTTCTCCTCTGGAACA	0.393													4	2					0	0	0.014758	0	0
HEPACAM	220296	broad.mit.edu	37	11	124792320	124792320	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:124792320C>T	uc001qbk.2	-	6	1318	c.912G>A	c.(910-912)CGG>CGA	p.R304R	HEPACAM_uc009zbj.2_Silent_p.R22R	NM_152722	NP_689935	Q14CZ8	HECAM_HUMAN	hepatocyte cell adhesion molecule precursor	304	Cytoplasmic (Potential).				cell adhesion|cell cycle arrest|regulation of growth	cytoplasm|integral to membrane				pancreas(1)	1	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.54e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0308)		TGGGGTTCTTCCGTTCCTGCT	0.602													43	96					0	0	0.014410	0	0
ADAMTS15	170689	broad.mit.edu	37	11	130342957	130342957	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:130342957C>T	uc010scd.1	+	8	2094	c.2094C>T	c.(2092-2094)TTC>TTT	p.F698F		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	698	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		GCTACAATTTCGTGGTGGCCA	0.582													25	44					0	0	0.005443	0	0
CCDC77	84318	broad.mit.edu	37	12	539842	539842	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:539842C>T	uc001qig.2	+	7	703	c.523C>T	c.(523-525)CAA>TAA	p.Q175*	CCDC77_uc009zdk.2_Nonsense_Mutation_p.Q143*|CCDC77_uc010sdp.1_Nonsense_Mutation_p.Q143*|CCDC77_uc010sdq.1_Nonsense_Mutation_p.Q143*	NM_032358	NP_115734	Q9BR77	CCD77_HUMAN	coiled-coil domain containing 77 isoform a	175						centrosome				ovary(1)	1	all_cancers(10;0.0149)|all_epithelial(11;0.035)|all_lung(10;0.111)|Ovarian(42;0.142)|Lung NSC(10;0.156)		OV - Ovarian serous cystadenocarcinoma(31;0.00123)|BRCA - Breast invasive adenocarcinoma(9;0.033)			CACCATTCTCCAAAAGACTAT	0.378													26	72					0	0	0.009535	0	0
CACNA1C	775	broad.mit.edu	37	12	2797764	2797764	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:2797764C>T	uc009zdu.1	+	49	6498	c.6185C>T	c.(6184-6186)TCC>TTC	p.S2062F	CACNA1C_uc009zdv.1_Missense_Mutation_p.S1976F|CACNA1C_uc001qkb.2_Missense_Mutation_p.S1979F|CACNA1C_uc001qkc.2_Missense_Mutation_p.S1998F|CACNA1C_uc001qke.2_Missense_Mutation_p.S1968F|CACNA1C_uc001qkf.2_Missense_Mutation_p.S1987F|CACNA1C_uc001qjz.2_Missense_Mutation_p.S1979F|CACNA1C_uc001qkd.2_Missense_Mutation_p.S1998F|CACNA1C_uc001qkg.2_Missense_Mutation_p.S1985F|CACNA1C_uc009zdw.1_Missense_Mutation_p.S2020F|CACNA1C_uc001qkh.2_Missense_Mutation_p.S1987F|CACNA1C_uc001qkl.2_Missense_Mutation_p.S2027F|CACNA1C_uc001qkn.2_Missense_Mutation_p.S1979F|CACNA1C_uc001qko.2_Missense_Mutation_p.S1999F|CACNA1C_uc001qkp.2_Missense_Mutation_p.S1979F|CACNA1C_uc001qkr.2_Missense_Mutation_p.S1996F|CACNA1C_uc001qku.2_Missense_Mutation_p.S2014F|CACNA1C_uc001qkq.2_Missense_Mutation_p.S2007F|CACNA1C_uc001qks.2_Missense_Mutation_p.S1979F|CACNA1C_uc001qkt.2_Missense_Mutation_p.S1998F|CACNA1C_uc001qki.1_Missense_Mutation_p.S1786F|CACNA1C_uc001qkj.1_Missense_Mutation_p.S1750F|CACNA1C_uc001qkk.1_Missense_Mutation_p.S1715F|CACNA1C_uc001qkm.1_Missense_Mutation_p.S1775F|CACNA1C_uc010sea.1_Missense_Mutation_p.S670F|uc001qkx.1_Intron|CACNA1C_uc001qky.1_Missense_Mutation_p.S297F	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	2062	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GGGGTCGAGTCCAGTGAGAAA	0.697													20	56					0	0	0.007413	0	0
DYRK4	8798	broad.mit.edu	37	12	4705788	4705788	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:4705788C>T	uc001qmx.2	+	6	613	c.453C>T	c.(451-453)ATC>ATT	p.I151I	DYRK4_uc009zeh.1_Silent_p.I266I|DYRK4_uc001qmy.1_Silent_p.I151I	NM_003845	NP_003836	Q9NR20	DYRK4_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	151	Protein kinase.					Golgi apparatus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|skin(1)	3			Colorectal(7;0.103)			AGCTGAAGATCCTGGAAGCTC	0.498													10	20					0	0	0.008291	0	0
DYRK4	8798	broad.mit.edu	37	12	4708873	4708873	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:4708873G>A	uc001qmx.2	+	8	860	c.700G>A	c.(700-702)GAA>AAA	p.E234K	DYRK4_uc009zeh.1_Missense_Mutation_p.E349K|DYRK4_uc001qmy.1_Missense_Mutation_p.E234K	NM_003845	NP_003836	Q9NR20	DYRK4_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	234	Protein kinase.					Golgi apparatus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|skin(1)	3			Colorectal(7;0.103)			TTCTCTCTAGGAAAATATAGT	0.328													16	55					0	0	0.004990	0	0
KCNA6	3742	broad.mit.edu	37	12	4919931	4919931	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:4919931G>A	uc001qng.2	+	1	1590	c.724G>A	c.(724-726)GAA>AAA	p.E242K		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	242						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						CACCCCTGGGGAAATGGGGAC	0.557										HNSCC(72;0.22)			33	94					0	0	0.017118	0	0
ANO2	57101	broad.mit.edu	37	12	5672572	5672572	+	Missense_Mutation	SNP	G	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:5672572G>T	uc001qnm.2	-	26	2962	c.2890C>A	c.(2890-2892)CCA>ACA	p.P964T		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	969	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						CCACCTCCTGGGCTCCTCAGA	0.562													4	6					2.56e-06	2.63794e-06	0.009096	1	0
NOP2	4839	broad.mit.edu	37	12	6669901	6669901	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:6669901C>T	uc001qph.1	-	13	1568	c.1388G>A	c.(1387-1389)GGG>GAG	p.G463E	NOP2_uc009zeq.1_Missense_Mutation_p.G179E|NOP2_uc001qpi.1_Missense_Mutation_p.G463E|NOP2_uc001qpj.1_5'UTR	NM_001033714	NP_001028886	P46087	NOP2_HUMAN	nucleolar protein 1, 120kDa	467					positive regulation of cell proliferation|rRNA processing	nucleolus	protein binding|RNA binding|S-adenosylmethionine-dependent methyltransferase activity			ovary(2)	2						GGAGATGACCCCAGTGCCACT	0.557													3	26					0	0	0.009096	0	0
ACRBP	84519	broad.mit.edu	37	12	6747518	6747518	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:6747518C>T	uc001qpu.1	-	10	1610	c.1562G>A	c.(1561-1563)GGC>GAC	p.G521D	LPAR5_uc001qps.2_5'Flank|LPAR5_uc010sff.1_Intron|ACRBP_uc001qpt.1_RNA|ACRBP_uc010sfg.1_Missense_Mutation_p.G488D	NM_032489	NP_115878	Q8NEB7	ACRBP_HUMAN	proacrosin binding protein sp32 precursor	521						acrosomal vesicle|extracellular region				central_nervous_system(1)	1						CTCACTTTTGCCAGGGCTCAG	0.562													22	54					0	0	0.014323	0	0
CLSTN3	9746	broad.mit.edu	37	12	7290645	7290645	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:7290645C>T	uc001qsr.2	+	8	1583	c.1305C>T	c.(1303-1305)TTC>TTT	p.F435F	CLSTN3_uc001qss.2_Silent_p.F447F	NM_014718	NP_055533	Q9BQT9	CSTN3_HUMAN	calsyntenin 3 precursor	435	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			large_intestine(1)	1						CAGTCAAGTTCCTCTGGAAGC	0.587													14	52					0	0	0.020292	0	0
CD163L1	283316	broad.mit.edu	37	12	7585262	7585262	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:7585262G>A	uc001qsy.2	-	4	542	c.516C>T	c.(514-516)TTC>TTT	p.F172F	CD163L1_uc010sge.1_Silent_p.F182F	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	172	SRCR 2.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						ACCTTTCTTGGAATTTCACCT	0.453													17	32					0	0	0.007413	0	0
CD163	9332	broad.mit.edu	37	12	7633849	7633849	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:7633849G>A	uc001qsz.3	-	15	3379	c.3251C>T	c.(3250-3252)TCC>TTC	p.S1084F	CD163_uc001qta.3_Missense_Mutation_p.S1084F|CD163_uc009zfw.2_Missense_Mutation_p.S1117F	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	1084	Cytoplasmic (Potential).			S->A: Impaired phosphorylation by PRKCA.	acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						TCCTCTTGAGGAAACTGAAAA	0.428													20	44					0	0	0.014323	0	0
CD163	9332	broad.mit.edu	37	12	7640647	7640647	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:7640647G>A	uc001qsz.3	-	7	1585	c.1457C>T	c.(1456-1458)CCC>CTC	p.P486L	CD163_uc001qta.3_Missense_Mutation_p.P486L|CD163_uc009zfw.2_Missense_Mutation_p.P486L	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	486	SRCR 5.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						TCCAGAACAGGGAATGTCCCC	0.468													8	11					0	0	0.006214	0	0
SLC2A14	144195	broad.mit.edu	37	12	7970503	7970504	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:7970503_7970504GG>AA	uc001qtk.2	-	15	2060_2061	c.1267_1268CC>TT	c.(1267-1269)CCA>TTA	p.P423L	SLC2A14_uc001qtl.2_Missense_Mutation_p.P400L|SLC2A14_uc001qtm.2_Missense_Mutation_p.P400L|SLC2A14_uc010sgg.1_Missense_Mutation_p.P314L|SLC2A14_uc001qtn.2_Missense_Mutation_p.P423L|SLC2A14_uc001qto.2_Missense_Mutation_p.P58L|SLC2A14_uc010sgh.1_Missense_Mutation_p.P438L	NM_153449	NP_703150	Q8TDB8	GTR14_HUMAN	glucose transporter 14	423	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane	glucose transmembrane transporter activity			ovary(1)	1				Kidney(36;0.0883)		CATCGCAGCTGGGCGGGGGCCC	0.54													15	47					0	0	0.004672	0	0
A2ML1	144568	broad.mit.edu	37	12	8995919	8995919	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:8995919G>A	uc001quz.3	+	12	1536	c.1438G>A	c.(1438-1440)GAT>AAT	p.D480N	A2ML1_uc001qva.1_Missense_Mutation_p.D60N|A2ML1_uc010sgm.1_5'Flank	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	324						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						CGACCCGGCCGATGCAAGCCC	0.562													21	33					0	0	0.016522	0	0
KLRC3	3823	broad.mit.edu	37	12	10588420	10588420	+	Missense_Mutation	SNP	C	T	T	rs147031208		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:10588420C>T	uc001qyh.2	-	1	173	c.166G>A	c.(166-168)GAT>AAT	p.D56N	KLRC2_uc010she.1_Missense_Mutation_p.D56N|KLRC2_uc001qyk.2_Missense_Mutation_p.D56N	NM_002261	NP_002252	Q07444	NKG2E_HUMAN	killer cell lectin-like receptor subfamily C,	56	Cytoplasmic (Potential).				cellular defense response	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|skin(1)	3						TATATTTTATCAATCCCTTGA	0.343													23	35					0	0	0.004656	0	0
PRB3	5544	broad.mit.edu	37	12	11421008	11421008	+	Missense_Mutation	SNP	C	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:11421008C>G	uc001qzs.2	-	3	213	c.175G>C	c.(175-177)GGA>CGA	p.G59R	PRB4_uc001qzf.1_Intron	NM_006249	NP_006240	Q04118	PRB3_HUMAN	proline-rich protein BstNI subfamily 3	59	1.|10 X 21 AA tandem repeats of [RH]-P-G-K- P-[EQ]-G-[PQS]-P-[PS]-Q-[GE]-G-N-[QK]- [SP]-[QR]-[GR]-P-P-P.|Pro-rich.					extracellular region	Gram-negative bacterial cell surface binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.201)			GGGGGTCGTCCTTCTGGCTTT	0.617													13	222					0	0	0.004007	0	0
PRB2	653247	broad.mit.edu	37	12	11546281	11546281	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:11546281C>T	uc010shk.1	-	3	766	c.731G>A	c.(730-732)GGA>GAA	p.G244E		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TGGGGGTGGTCCTTGTGGCTT	0.602													75	334					0	0	0.014410	0	0
GSG1	83445	broad.mit.edu	37	12	13238026	13238026	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:13238026G>A	uc001rbn.2	-	7	1071	c.898C>T	c.(898-900)CGG>TGG	p.R300W	GSG1_uc001rbj.2_Missense_Mutation_p.R264W|GSG1_uc001rbk.2_3'UTR|GSG1_uc001rbl.2_Missense_Mutation_p.R236W|GSG1_uc001rbm.2_Missense_Mutation_p.R213W|GSG1_uc001rbo.2_3'UTR|GSG1_uc001rbp.2_Missense_Mutation_p.R277W|GSG1_uc001rbq.1_Intron	NM_001080555	NP_001074024	Q2KHT4	GSG1_HUMAN	germ cell associated 1 isoform 4	287						endoplasmic reticulum membrane|integral to membrane					0		Prostate(47;0.183)		BRCA - Breast invasive adenocarcinoma(232;0.15)		GACAGCCGCCGAGGGAAACAC	0.532													7	15					0	0	0.003080	0	0
RERG	85004	broad.mit.edu	37	12	15262429	15262429	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:15262429C>T	uc001rcs.2	-	4	355	c.215G>A	c.(214-216)GGG>GAG	p.G72E	RERG_uc001rct.2_Missense_Mutation_p.G72E|RERG_uc010shu.1_Missense_Mutation_p.G53E	NM_032918	NP_116307	Q96A58	RERG_HUMAN	RAS-like, estrogen-regulated, growth inhibitor	72					negative regulation of cell growth|negative regulation of cell proliferation|response to hormone stimulus|small GTPase mediated signal transduction	cytosol|membrane|nucleus	estrogen receptor binding|GDP binding|GTP binding|GTPase activity			lung(1)	1						TCGCATGTGCCCCTCCCTCTG	0.458													96	312					0	0	0.014410	0	0
LMO3	55885	broad.mit.edu	37	12	16753761	16753761	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:16753761C>T	uc001rdk.1	-	2	474	c.34G>A	c.(34-36)GGT>AGT	p.G12S	LMO3_uc001rdj.1_Missense_Mutation_p.G23S|LMO3_uc010shy.1_Missense_Mutation_p.G30S|LMO3_uc001rdl.1_Missense_Mutation_p.G12S|LMO3_uc009zii.1_RNA|LMO3_uc010shz.1_Missense_Mutation_p.G12S|LMO3_uc001rdm.1_Missense_Mutation_p.G12S|LMO3_uc001rdo.1_RNA|LMO3_uc001rdp.1_RNA|LMO3_uc001rdn.1_Missense_Mutation_p.G12S|LMO3_uc009zij.1_RNA|LMO3_uc009zik.1_RNA	NM_018640	NP_061110	Q8TAP4	LMO3_HUMAN	LIM domain only 3	12	LIM zinc-binding 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent		zinc ion binding				0		Hepatocellular(102;0.244)				CCAGCACAACCTTTCGGCTTG	0.468													9	26					0	0	0.010729	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18793380	18793380	+	Silent	SNP	T	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:18793380T>G	uc001rdt.2	+	31	4193	c.4077T>G	c.(4075-4077)TCT>TCG	p.S1359S	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Silent_p.S1400S|PIK3C2G_uc010sic.1_Silent_p.S1178S	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1359	C2.				cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				CAGATGGCTCTGCGCCCAGTG	0.383													4	8					0	0	0.001168	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20868168	20868168	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:20868168A>T	uc001rej.3	+	7	980	c.625A>T	c.(625-627)ATT>TTT	p.I209F	SLCO1C1_uc010sii.1_Missense_Mutation_p.I209F|SLCO1C1_uc010sij.1_Intron|SLCO1C1_uc009zip.2_Missense_Mutation_p.I43F|SLCO1C1_uc001rei.2_Missense_Mutation_p.I209F|SLCO1C1_uc010sik.1_Missense_Mutation_p.I91F	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	209	Helical; Name=4; (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					GCCTTTGGGCATTGCCTACCT	0.428													31	57					0	0	0.013726	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21028306	21028306	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:21028306G>A	uc001rek.2	+	8	991	c.865G>A	c.(865-867)GAA>AAA	p.E289K	SLCO1B3_uc001rel.2_Missense_Mutation_p.E289K|SLCO1B3_uc010sil.1_Missense_Mutation_p.E289K|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.E114K	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	289	Cytoplasmic (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					ACCACAAAAAGAAAGAAAAAT	0.328													7	33					0	0	0.001984	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21051369	21051369	+	Splice_Site	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:21051369G>A	uc001rek.2	+	13	1809	c.1683_splice	c.e13-1	p.K561_splice	SLCO1B3_uc001rel.2_Splice_Site_p.K561_splice|SLCO1B3_uc010sil.1_Splice_Site_p.K561_splice|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Splice_Site_p.K386_splice	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,						bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					TCATATTTCAGGATTGTTCAA	0.299													6	26					0	0	0.001168	0	0
OVCH1	341350	broad.mit.edu	37	12	29617568	29617568	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:29617568G>A	uc001rix.1	-	18	1997	c.1997C>T	c.(1996-1998)GCC>GTC	p.A666V		NM_183378	NP_899234	Q7RTY7	OVCH1_HUMAN	ovochymase 1 precursor	666	Peptidase S1 2.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			ovary(3)|central_nervous_system(3)|pancreas(3)|large_intestine(1)	10	Lung NSC(12;1.84e-09)|Acute lymphoblastic leukemia(23;0.00885)|all_hematologic(23;0.0155)					TTGTATTAGGGCAATGTCAGA	0.463													10	31					0	0	0.008291	0	0
ABCD2	225	broad.mit.edu	37	12	40012795	40012795	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:40012795T>C	uc001rmb.2	-	1	1049	c.623A>G	c.(622-624)CAA>CGA	p.Q208R		NM_005164	NP_005155	Q9UBJ2	ABCD2_HUMAN	ATP-binding cassette, sub-family D, member 2	208	ABC transmembrane type-1.|Interaction with PEX19.				fatty acid metabolic process|transport	ATP-binding cassette (ABC) transporter complex|integral to plasma membrane|peroxisomal membrane	ATP binding|ATPase activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)|skin(1)	6						CGTAAGAGATTGGTCAGGGTT	0.403													14	32					0	0	0.020292	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43769915	43769915	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:43769915C>T	uc010skx.1	-	35	5257	c.5257G>A	c.(5257-5259)GAA>AAA	p.E1753K		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1753	GON.					proteinaceous extracellular matrix	zinc ion binding	p.L1753F(1)		central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		GTTAAATATTCCTTAGGGTTC	0.338													5	6					0	0	0.014758	0	0
TMEM117	84216	broad.mit.edu	37	12	44782223	44782223	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:44782223C>T	uc001rod.2	+	8	1379	c.1313C>T	c.(1312-1314)TCT>TTT	p.S438F	TMEM117_uc001roe.2_Missense_Mutation_p.S334F|TMEM117_uc009zkc.2_3'UTR	NM_032256	NP_115632	Q9H0C3	TM117_HUMAN	transmembrane protein 117	438						endoplasmic reticulum|integral to membrane					0	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.124)		AAAAGAAAATCTCCATCAGAA	0.413													4	18					0	0	0.009096	0	0
SLC38A4	55089	broad.mit.edu	37	12	47178369	47178369	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:47178369C>T	uc001rpi.2	-	7	848	c.449G>A	c.(448-450)GGA>GAA	p.G150E	SLC38A4_uc001rpj.2_Missense_Mutation_p.G150E|SLC38A4_uc009zkl.2_Missense_Mutation_p.G150E	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	150	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					TCCAATTTTTCCCGGCCATCC	0.333													8	18					0	0	0.006214	0	0
MLL2	8085	broad.mit.edu	37	12	49428389	49428389	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:49428389G>A	uc001rta.3	-	36	10416	c.10416C>T	c.(10414-10416)AAC>AAT	p.N3472N		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	3472	Gln-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CTGCCACATGGTTCTGCAGAT	0.552			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			4	14					0	0	0.009096	0	0
MLL2	8085	broad.mit.edu	37	12	49444009	49444009	+	Missense_Mutation	SNP	T	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:49444009T>G	uc001rta.3	-	11	3362	c.3362A>C	c.(3361-3363)GAC>GCC	p.D1121A		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	1121	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						AGGGGCTGTGTCTTCCCCTAG	0.632			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			5	17					0	0	0.014758	0	0
FAIM2	23017	broad.mit.edu	37	12	50294991	50294991	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:50294991C>T	uc001rvj.1	-	2	278	c.133G>A	c.(133-135)GAG>AAG	p.E45K	FAIM2_uc001rvi.1_5'UTR|FAIM2_uc001rvk.1_RNA	NM_012306	NP_036438	Q9BWQ8	FAIM2_HUMAN	Fas apoptotic inhibitory molecule 2	45					anti-apoptosis|apoptosis	cell junction|integral to membrane|postsynaptic membrane				large_intestine(1)|ovary(1)|skin(1)	3						TTCATCCCCTCCCCAGAGGTG	0.662													15	31					0	0	0.020292	0	0
SLC11A2	4891	broad.mit.edu	37	12	51385436	51385436	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:51385436G>A	uc001rxe.3	-	14	1464	c.1367C>T	c.(1366-1368)CCC>CTC	p.P456L	SLC11A2_uc001rxd.3_Missense_Mutation_p.P305L|SLC11A2_uc001rxc.3_Missense_Mutation_p.P456L|SLC11A2_uc001rxf.2_RNA|SLC11A2_uc001rxg.1_Missense_Mutation_p.P69L|SLC11A2_uc010smx.1_Missense_Mutation_p.P452L|SLC11A2_uc001rxh.1_Missense_Mutation_p.P456L|SLC11A2_uc001rxj.1_Missense_Mutation_p.P456L|SLC11A2_uc001rxi.2_Missense_Mutation_p.P456L|SLC11A2_uc001rxk.1_Missense_Mutation_p.P485L|SLC11A2_uc010smy.1_Missense_Mutation_p.P419L	NM_000617	NP_000608	P49281	NRAM2_HUMAN	solute carrier family 11 (proton-coupled	456	Helical; (Potential).				activation of caspase activity|cellular iron ion homeostasis|cellular response to oxidative stress|detection of oxygen|ferrous iron import|multicellular organismal iron ion homeostasis|response to hypoxia|response to iron ion	apical plasma membrane|basal part of cell|cell surface|cytoplasmic vesicle|early endosome|late endosome|late endosome membrane|lysosomal membrane|lysosome|nucleus|paraferritin complex|perinuclear region of cytoplasm|perinuclear region of cytoplasm|plasma membrane|recycling endosome|trans-Golgi network	cadmium ion transmembrane transporter activity|cadmium ion transmembrane transporter activity|cobalt ion transmembrane transporter activity|copper ion transmembrane transporter activity|ferrous iron transmembrane transporter activity|ferrous iron transmembrane transporter activity|lead ion transmembrane transporter activity|lead ion transmembrane transporter activity|manganese ion transmembrane transporter activity|manganese ion transmembrane transporter activity|nickel ion transmembrane transporter activity|protein binding|solute:hydrogen symporter activity|vanadium ion transmembrane transporter activity|zinc ion transmembrane transporter activity			large_intestine(1)	1						TGTGAGGATGGGTATGAGAGC	0.458													7	21					0	0	0.003080	0	0
KRT77	374454	broad.mit.edu	37	12	53088463	53088463	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:53088463C>T	uc001saw.2	-	5	1056	c.1027G>A	c.(1027-1029)GAA>AAA	p.E343K	KRT77_uc009zmi.2_Missense_Mutation_p.E101K	NM_175078	NP_778253	Q7Z794	K2C1B_HUMAN	keratin 77	343	Rod.|Coil 2.					keratin filament	structural molecule activity			ovary(1)	1						GCAATCAGTTCATACTGGGTC	0.567													12	29					0	0	0.010729	0	0
KRT77	374454	broad.mit.edu	37	12	53096950	53096950	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:53096950C>T	uc001saw.2	-	1	298	c.269G>A	c.(268-270)GGA>GAA	p.G90E	KRT77_uc009zmi.2_5'UTR	NM_175078	NP_778253	Q7Z794	K2C1B_HUMAN	keratin 77	90	Head.					keratin filament	structural molecule activity			ovary(1)	1						CCCTCCAAATCCCCCTACTCC	0.577													4	12					0	0	0.014758	0	0
OR9K2	441639	broad.mit.edu	37	12	55523577	55523577	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:55523577C>T	uc010spe.1	+	1	25	c.25C>T	c.(25-27)CAT>TAT	p.H9Y		NM_001005243	NP_001005243	Q8NGE7	OR9K2_HUMAN	olfactory receptor, family 9, subfamily K,	9	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						ACCAAGAGTTCATTTGTATAT	0.343													7	16					0	0	0.003080	0	0
OR6C75	390323	broad.mit.edu	37	12	55759556	55759556	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:55759556G>A	uc010spk.1	+	1	662	c.662G>A	c.(661-663)CGG>CAG	p.R221Q		NM_001005497	NP_001005497	A6NL08	O6C75_HUMAN	olfactory receptor, family 6, subfamily C,	221	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3						AACATCATCCGGACAATTCTG	0.388													7	21					0	0	0.003080	0	0
OR6C4	341418	broad.mit.edu	37	12	55945195	55945196	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:55945195_55945196GG>AA	uc010spp.1	+	1	185_186	c.185_186GG>AA	c.(184-186)CGG>CAA	p.R62Q		NM_001005494	NP_001005494	Q8NGE1	OR6C4_HUMAN	olfactory receptor, family 6, subfamily C,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTCTTCCTCCGGAATTTCTCCT	0.431													9	37					0	0	0.004672	0	0
IKZF4	64375	broad.mit.edu	37	12	56428444	56428444	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:56428444C>T	uc001sjb.1	+	9	1246	c.1087C>T	c.(1087-1089)CAC>TAC	p.H363Y	IKZF4_uc010sqa.1_Missense_Mutation_p.H316Y|IKZF4_uc001sjc.1_Missense_Mutation_p.H363Y|IKZF4_uc001sjd.1_Missense_Mutation_p.H261Y|IKZF4_uc009zoi.1_Missense_Mutation_p.H318Y|IKZF4_uc001sje.1_Missense_Mutation_p.H322Y	NM_022465	NP_071910	Q9H2S9	IKZF4_HUMAN	zinc finger protein, subfamily 1A, 4	363					negative regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (6;0.025)|OV - Ovarian serous cystadenocarcinoma(18;0.123)			GGTGGCACACCACAGCCTAGA	0.562													39	100					0	0	0.006230	0	0
IKZF4	64375	broad.mit.edu	37	12	56428585	56428585	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:56428585C>T	uc001sjb.1	+	9	1387	c.1228C>T	c.(1228-1230)CCT>TCT	p.P410S	IKZF4_uc010sqa.1_Missense_Mutation_p.P363S|IKZF4_uc001sjc.1_Missense_Mutation_p.P410S|IKZF4_uc001sjd.1_Missense_Mutation_p.P308S|IKZF4_uc009zoi.1_Missense_Mutation_p.P365S|IKZF4_uc001sje.1_Missense_Mutation_p.P369S	NM_022465	NP_071910	Q9H2S9	IKZF4_HUMAN	zinc finger protein, subfamily 1A, 4	410					negative regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (6;0.025)|OV - Ovarian serous cystadenocarcinoma(18;0.123)			GCAGCCCCTCCCTGGTCGACT	0.637													16	34					0	0	0.004007	0	0
STAT2	6773	broad.mit.edu	37	12	56745206	56745206	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:56745206G>A	uc001slc.2	-	9	889	c.811C>T	c.(811-813)CAC>TAC	p.H271Y	STAT2_uc001slb.2_5'Flank|STAT2_uc001sld.2_Missense_Mutation_p.H267Y|STAT2_uc010sqn.1_Missense_Mutation_p.H267Y	NM_005419	NP_005410	P52630	STAT2_HUMAN	signal transducer and activator of transcription	271					interspecies interaction between organisms|JAK-STAT cascade|regulation of transcription from RNA polymerase II promoter|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	cytosol|nucleoplasm|plasma membrane	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(1)|lung(1)|kidney(1)	3						TGCCTCAGGTGAAACAACAGC	0.522													42	121					0	0	0.011902	0	0
B4GALNT1	2583	broad.mit.edu	37	12	58022919	58022919	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:58022919G>A	uc001spg.1	-	7	1155	c.723C>T	c.(721-723)TCC>TCT	p.S241S	B4GALNT1_uc010sru.1_Silent_p.S186S|B4GALNT1_uc010srv.1_Intron	NM_001478	NP_001469	Q00973	B4GN1_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 1	241	Lumenal (Potential).				lipid glycosylation	integral to Golgi membrane|membrane fraction	(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase activity				0	Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.109)			GTCCCTCGGTGGAGAACCGGA	0.463													8	23					0	0	0.008291	0	0
LRIG3	121227	broad.mit.edu	37	12	59274408	59274408	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:59274408G>A	uc001sqr.2	-	13	2002	c.1756C>T	c.(1756-1758)CAC>TAC	p.H586Y	LRIG3_uc009zqh.2_Missense_Mutation_p.H526Y|LRIG3_uc010ssh.1_RNA	NM_153377	NP_700356	Q6UXM1	LRIG3_HUMAN	leucine-rich repeats and immunoglobulin-like	586	Ig-like C2-type 1.					integral to membrane				skin(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;1.17e-18)			GAACCAAAGTGATTGGAGATG	0.448													17	49					0	0	0.010504	0	0
CPM	1368	broad.mit.edu	37	12	69260720	69260720	+	Missense_Mutation	SNP	T	G	G	rs140807579	byFrequency	TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:69260720T>G	uc001sup.2	-	7	957	c.896A>C	c.(895-897)AAT>ACT	p.N299T	CPM_uc001sur.2_Missense_Mutation_p.N299T|CPM_uc001suq.2_Missense_Mutation_p.N299T	NM_198320	NP_938079	P14384	CBPM_HUMAN	carboxypeptidase M precursor	299					anatomical structure morphogenesis|proteolysis	anchored to membrane|cytoplasm|nucleus|plasma membrane	metallocarboxypeptidase activity|zinc ion binding				0	all_epithelial(5;1.09e-35)|Lung NSC(4;1.47e-33)|all_lung(4;1.02e-31)|Breast(13;1.59e-06)		all cancers(2;2.69e-50)|GBM - Glioblastoma multiforme(2;7.34e-41)|BRCA - Breast invasive adenocarcinoma(5;5.38e-10)|Lung(24;4.61e-05)|LUAD - Lung adenocarcinoma(15;0.000376)|STAD - Stomach adenocarcinoma(21;0.00372)|Kidney(9;0.143)			GGCTTTGTTATTATTCCAAAA	0.358													19	27					0	0	0.008871	0	0
PTPRB	5787	broad.mit.edu	37	12	70928675	70928675	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:70928675G>A	uc001swb.3	-	28	5518	c.5488C>T	c.(5488-5490)CTG>TTG	p.L1830L	uc001svz.2_Intron|PTPRB_uc010sto.1_Silent_p.L1740L|PTPRB_uc010stp.1_Silent_p.L1740L|PTPRB_uc001swc.3_Silent_p.L2048L|PTPRB_uc001swa.3_Silent_p.L1960L	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1830	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			AGCATCTGCAGGATGAGGTCC	0.502													11	30					0	0	0.010729	0	0
TRHDE	29953	broad.mit.edu	37	12	73050711	73050711	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:73050711G>A	uc001sxa.2	+	18	2884	c.2854G>A	c.(2854-2856)GGA>AGA	p.G952R		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	952	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						TTTGAGGTATGGAGAAGCATT	0.284													9	25					0	0	0.016723	0	0
MYF6	4618	broad.mit.edu	37	12	81101549	81101549	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:81101549G>A	uc001szf.1	+	1	104	c.51G>A	c.(49-51)GGG>GGA	p.G17G		NM_002469	NP_002460	P23409	MYF6_HUMAN	myogenic factor 6	17					muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						ACTTGGATGGGGAAAATGTTA	0.502													12	74					0	0	0.003163	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85450628	85450628	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:85450628G>A	uc001tac.2	+	8	2168	c.2057G>A	c.(2056-2058)GGC>GAC	p.G686D	LRRIQ1_uc001tab.1_Missense_Mutation_p.G686D|LRRIQ1_uc001taa.1_Missense_Mutation_p.G661D	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	686										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		CCTTGTGAGGGCTTGAGTAAC	0.343													15	41					0	0	0.020292	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85517940	85517940	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:85517940G>A	uc001tac.2	+	17	3761	c.3650G>A	c.(3649-3651)CGA>CAA	p.R1217Q	LRRIQ1_uc001tab.1_Missense_Mutation_p.R1217Q	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	1217										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		GCACACGAACGAGGGGATGTA	0.388													14	40					0	0	0.016723	0	0
USP44	84101	broad.mit.edu	37	12	95928001	95928001	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:95928001C>T	uc001teg.2	-	2	176	c.32G>A	c.(31-33)GGG>GAG	p.G11E	USP44_uc001teh.2_Missense_Mutation_p.G11E|USP44_uc009zte.2_Missense_Mutation_p.G8E	NM_001042403	NP_001035862	Q9H0E7	UBP44_HUMAN	ubiquitin thiolesterase 44	11					anaphase|cell division|mitosis|negative regulation of mitotic anaphase-promoting complex activity|protein deubiquitination|regulation of spindle checkpoint|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)|breast(1)|central_nervous_system(1)	3						CTGCAGCTGCCCAACATGTTT	0.468											OREG0022039	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	86					0	0	0.004656	0	0
CCDC38	120935	broad.mit.edu	37	12	96266060	96266060	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:96266060C>T	uc001tek.1	-	14	1691	c.1457G>A	c.(1456-1458)AGG>AAG	p.R486K		NM_182496	NP_872302	Q502W7	CCD38_HUMAN	coiled-coil domain containing 38	486										skin(1)	1						CTGTTTCATCCTCTCAATTGC	0.408													41	134					0	0	0.014410	0	0
SLC17A8	246213	broad.mit.edu	37	12	100813746	100813746	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:100813746G>A	uc010svi.1	+	12	1892	c.1579G>A	c.(1579-1581)GAA>AAA	p.E527K	SLC17A8_uc009ztx.2_Missense_Mutation_p.E477K	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	527	Cytoplasmic (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						TGACCAGGACGAATTAGCTGA	0.468													12	30					0	0	0.010729	0	0
ANO4	121601	broad.mit.edu	37	12	101381320	101381320	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:101381320C>T	uc010svm.1	+	8	1178	c.606C>T	c.(604-606)ATC>ATT	p.I202I	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Silent_p.I167I|ANO4_uc001thx.2_Silent_p.I202I	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	202	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						ACCACAGGATCGATAAACAAA	0.498										HNSCC(74;0.22)	OREG0022059	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	77	219					0	0	0.014410	0	0
SLC5A8	160728	broad.mit.edu	37	12	101581199	101581199	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:101581199G>A	uc001thz.3	-	7	1318	c.928C>T	c.(928-930)CCT>TCT	p.P310S		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	310	Extracellular (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						GCTGTCCAAGGATCACAGTCA	0.438													4	16					0	0	0.014758	0	0
STAB2	55576	broad.mit.edu	37	12	104046436	104046436	+	Missense_Mutation	SNP	T	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:104046436T>G	uc001tjw.2	+	12	1546	c.1360T>G	c.(1360-1362)TTC>GTC	p.F454V		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	454	Extracellular (Potential).|FAS1 1.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CACAGACATGTTCTACACCTT	0.393													9	30					0	0	0.006214	0	0
RFX4	5992	broad.mit.edu	37	12	107113834	107113834	+	Splice_Site	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:107113834T>C	uc001tlr.2	+	12	1299	c.1233_splice	c.e12+2	p.K411_splice	RFX4_uc001tls.2_Splice_Site_p.K420_splice|RFX4_uc001tlt.2_Splice_Site_p.K420_splice|RFX4_uc001tlv.2_Splice_Site_p.K317_splice	NM_213594	NP_998759	Q33E94	RFX4_HUMAN	regulatory factor X4 isoform c						transcription, DNA-dependent	nucleus	DNA binding			upper_aerodigestive_tract(1)	1						GTTGTGAAGGTTGGTAAACCG	0.537													22	54					0	0	0.016522	0	0
CMKLR1	1240	broad.mit.edu	37	12	108686637	108686637	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:108686637C>T	uc009zuw.2	-	3	294	c.103G>A	c.(103-105)GAA>AAA	p.E35K	CMKLR1_uc001tmw.2_Missense_Mutation_p.E35K|CMKLR1_uc001tmv.2_Missense_Mutation_p.E33K|CMKLR1_uc009zuv.2_Missense_Mutation_p.E35K	NM_001142345	NP_001135817	Q99788	CML1_HUMAN	chemokine-like receptor 1 isoform a	35	Extracellular (Potential).				chemotaxis|immune response|negative regulation of interleukin-12 production|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage chemotaxis|regulation of calcium-mediated signaling|skeletal system development	integral to plasma membrane	chemokine receptor activity			lung(3)|ovary(1)|pancreas(1)	5						ACCCTGGCTTCCAAGGGGGAT	0.483													13	30					0	0	0.016723	0	0
TMEM119	338773	broad.mit.edu	37	12	108986010	108986011	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:108986010_108986011GG>AA	uc001tng.2	-	2	312_313	c.149_150CC>TT	c.(148-150)TCC>TTT	p.S50F	TMEM119_uc001tnf.2_RNA	NM_181724	NP_859075	Q4V9L6	TM119_HUMAN	transmembrane protein 119 precursor	50	Extracellular (Potential).					integral to membrane				ovary(1)	1						GGCTCGGGGAGGAGGCCGACGA	0.718													7	17					0	0	0.004672	0	0
CORO1C	23603	broad.mit.edu	37	12	109046188	109046188	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:109046188G>A	uc001tnj.2	-	8	957	c.861C>T	c.(859-861)GAC>GAT	p.D287D	CORO1C_uc009zva.2_Silent_p.D340D|CORO1C_uc010sxf.1_Silent_p.D250D	NM_014325	NP_055140	Q9ULV4	COR1C_HUMAN	coronin, actin binding protein, 1C isoform 1	287	WD 4.				actin cytoskeleton organization|phagocytosis|signal transduction	actin cytoskeleton	actin filament binding			skin(3)	3						GAATACTGCTGTCACCCTGTA	0.478													33	71					0	0	0.009718	0	0
CUX2	23316	broad.mit.edu	37	12	111758289	111758289	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:111758289C>T	uc001tsa.1	+	17	2629	c.2476C>T	c.(2476-2478)CGC>TGC	p.R826C		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	826						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						CGCCTGGCCCCGCGGGGACGA	0.771													3	15					0	0	0.004672	0	0
OAS3	4940	broad.mit.edu	37	12	113386755	113386755	+	Missense_Mutation	SNP	T	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:113386755T>G	uc001tug.2	+	6	1206	c.1119T>G	c.(1117-1119)AAT>AAG	p.N373K		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	373	Linker.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						AGAGCCTCAATGCTGTGTACC	0.612													10	20					0	0	0.008291	0	0
NOS1	4842	broad.mit.edu	37	12	117768489	117768489	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:117768489G>A	uc001twm.1	-	2	1072	c.386C>T	c.(385-387)CCC>CTC	p.P129L		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	129	Interaction with NOSIP (By similarity).				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GGCTTTGGTGGGGGGACCCAG	0.652													25	57					0	0	0.018920	0	0
NOS1	4842	broad.mit.edu	37	12	117768500	117768500	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:117768500G>A	uc001twm.1	-	2	1061	c.375C>T	c.(373-375)CCC>CCT	p.P125P		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	125	Interaction with NOSIP (By similarity).				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GGGGACCCAGGGGCTGTGTCA	0.652													18	61					0	0	0.006122	0	0
HNF1A	6927	broad.mit.edu	37	12	121416806	121416806	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:121416806G>A	uc001tzg.2	+	1	258	c.235G>A	c.(235-237)GAA>AAA	p.E79K	HNF1A_uc001tze.1_Missense_Mutation_p.E79K|HNF1A_uc001tzf.2_Missense_Mutation_p.E79K|HNF1A_uc010szn.1_Missense_Mutation_p.E79K	NM_000545	NP_000536	P20823	HNF1A_HUMAN	hepatic nuclear factor-1-alpha	79	Asp/Glu-rich (acidic; potential involvement with transcription).				glucose homeostasis|glucose import|insulin secretion|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|renal glucose absorption	cytoplasm|nucleus|protein complex	DNA binding|protein dimerization activity|protein heterodimerization activity|protein homodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			liver(92)|large_intestine(15)|endometrium(6)|breast(2)|lung(1)	116	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CGACGATGGGGAAGACTTCAC	0.662									Hepatic_Adenoma_Familial_Clustering_of				71	195					0	0	0.014410	0	0
CAMKK2	10645	broad.mit.edu	37	12	121712110	121712110	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:121712110G>A	uc001tzu.2	-	2	344	c.220C>T	c.(220-222)CTG>TTG	p.L74L	CAMKK2_uc001tzt.2_Silent_p.L74L|CAMKK2_uc001tzv.2_Silent_p.L74L|CAMKK2_uc001tzw.2_Silent_p.L74L|CAMKK2_uc001tzx.2_Silent_p.L74L|CAMKK2_uc001tzy.2_Silent_p.L74L|CAMKK2_uc001uaa.1_Silent_p.L74L|CAMKK2_uc001uab.2_Silent_p.L74L|CAMKK2_uc001uac.2_Silent_p.L74L|CAMKK2_uc001uad.1_Silent_p.L74L	NM_006549	NP_006540	Q96RR4	KKCC2_HUMAN	calcium/calmodulin-dependent protein kinase	74					calcium-mediated signaling|MAPKKK cascade|positive regulation of transcription, DNA-dependent|protein autophosphorylation|regulation of protein kinase activity	cytoplasm	ATP binding|calcium ion binding|calmodulin binding|calmodulin-dependent protein kinase activity|protein tyrosine kinase activity			lung(1)|large_intestine(1)|stomach(1)	3	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TCGGCCTCCAGGGGCCGGTCC	0.677													74	177					0	0	0.014410	0	0
CLIP1	6249	broad.mit.edu	37	12	122812709	122812709	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:122812709C>T	uc001ucg.1	-	16	3140	c.3034G>A	c.(3034-3036)GAA>AAA	p.E1012K	CLIP1_uc001uch.1_Missense_Mutation_p.E1001K|CLIP1_uc001uci.1_Missense_Mutation_p.E966K|CLIP1_uc001ucj.1_Missense_Mutation_p.E587K	NM_002956	NP_002947	P30622	CLIP1_HUMAN	restin isoform a	1012	Potential.				mitotic prometaphase|positive regulation of microtubule polymerization	centrosome|cytosol|endosome|intermediate filament|kinetochore	nucleic acid binding|protein homodimerization activity|zinc ion binding			ovary(2)|breast(1)	3	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.81e-05)|Epithelial(86;6.85e-05)|BRCA - Breast invasive adenocarcinoma(302;0.226)		ATTTTCTTTTCCTGCAGAGAC	0.493													16	143					0	0	0.019004	0	0
TMEM132D	121256	broad.mit.edu	37	12	130184903	130184903	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:130184903C>T	uc009zyl.1	-	2	748	c.420G>A	c.(418-420)CTG>CTA	p.L140L		NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	140	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		TGGGCCGGCTCAGGTAGACTT	0.532													9	32					0	0	0.006214	0	0
GPR133	283383	broad.mit.edu	37	12	131622767	131622767	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:131622767C>T	uc001uit.3	+	24	3081	c.2522C>T	c.(2521-2523)TCG>TTG	p.S841L	GPR133_uc010tbm.1_Missense_Mutation_p.S873L|GPR133_uc009zyo.2_Missense_Mutation_p.S123L|GPR133_uc009zyp.2_RNA	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor	841	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		CCCTTCCACTCGGACCTCGTG	0.622													16	25					0	0	0.006122	0	0
CHFR	55743	broad.mit.edu	37	12	133430057	133430057	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:133430057G>A	uc001ulf.2	-	11	1452	c.1368C>T	c.(1366-1368)GCC>GCT	p.A456A	CHFR_uc001ulc.1_RNA|CHFR_uc001ule.2_Silent_p.A444A|CHFR_uc010tbs.1_Silent_p.A456A|CHFR_uc001uld.2_Silent_p.A415A|CHFR_uc010tbt.1_Silent_p.A364A	NM_001161344	NP_001154816	Q96EP1	CHFR_HUMAN	checkpoint with forkhead and ring finger domains	456					cell division|mitosis|mitotic cell cycle checkpoint|modification-dependent protein catabolic process|protein polyubiquitination	PML body	nucleotide binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(1)	1	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.00552)|all_epithelial(31;0.226)		OV - Ovarian serous cystadenocarcinoma(86;2.59e-08)|Epithelial(86;6.38e-07)|all cancers(50;1.56e-05)		CATCCCCCAGGGCCTGTGGGG	0.697													3	5					0	0	0.009096	0	0
ZNF268	10795	broad.mit.edu	37	12	133779306	133779306	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:133779306C>T	uc010tcf.1	+	6	1364	c.1034C>T	c.(1033-1035)TCA>TTA	p.S345L	ZNF268_uc010tbv.1_Missense_Mutation_p.S184L|ZNF268_uc010tbw.1_Missense_Mutation_p.S184L|ZNF268_uc010tbx.1_Missense_Mutation_p.S205L|ZNF268_uc010tby.1_Missense_Mutation_p.S184L|ZNF268_uc010tbz.1_Missense_Mutation_p.S184L|ZNF268_uc010tca.1_Missense_Mutation_p.S184L|ZNF268_uc010tcb.1_Missense_Mutation_p.S205L|ZNF268_uc010tcc.1_Missense_Mutation_p.S184L|ZNF268_uc010tcd.1_Missense_Mutation_p.S184L|ZNF268_uc010tce.1_Missense_Mutation_p.S184L|ZNF268_uc010tcg.1_Missense_Mutation_p.S184L|ZNF268_uc010tch.1_Missense_Mutation_p.S345L	NM_003415	NP_003406	Q14587	ZN268_HUMAN	zinc finger protein 268 isoform a	345	C2H2-type 3.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.000215)|all_epithelial(31;0.096)		OV - Ovarian serous cystadenocarcinoma(86;3.58e-08)|Epithelial(86;6.6e-07)|all cancers(50;2.28e-05)		AGTTTCCATTCACAGCTTGTT	0.398													7	8					0	0	0.001984	0	0
TPTE2	93492	broad.mit.edu	37	13	20025334	20025334	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr13:20025334C>T	uc001umd.2	-	12	984	c.773G>A	c.(772-774)CGA>CAA	p.R258Q	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Missense_Mutation_p.R147Q|TPTE2_uc001ume.2_Missense_Mutation_p.R181Q|TPTE2_uc009zzm.2_Intron|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	258	Phosphatase tensin-type.					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		ATAGTGGTTTCGATGTTTCTT	0.363													4	19					0	0	0.014758	0	0
SACS	26278	broad.mit.edu	37	13	23907979	23907979	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr13:23907979G>A	uc001uon.2	-	10	10625	c.10036C>T	c.(10036-10038)CCT>TCT	p.P3346S	SACS_uc001uoo.2_Missense_Mutation_p.P3199S|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3346					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		GACAACAAAGGAACAAATGCA	0.383													4	22					0	0	0.014758	0	0
ATP12A	479	broad.mit.edu	37	13	25262581	25262581	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr13:25262581T>C	uc001upp.2	+	4	540	c.353T>C	c.(352-354)CTC>CCC	p.L118P	ATP12A_uc010aaa.2_Missense_Mutation_p.L118P	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	118	Helical; (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	TTCTCTATCCTCCTGTGGGTG	0.592													16	370					0	0	0.008871	0	0
RNF17	56163	broad.mit.edu	37	13	25451191	25451191	+	Missense_Mutation	SNP	T	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr13:25451191T>G	uc001upr.2	+	34	4681	c.4640T>G	c.(4639-4641)CTC>CGC	p.L1547R	RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.L1543R|RNF17_uc001ups.2_Missense_Mutation_p.L1486R|RNF17_uc010aac.2_Missense_Mutation_p.L739R|RNF17_uc010aad.2_Missense_Mutation_p.L557R	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	1547					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		ATAAAGGTTCTCTTGGCAGGG	0.433													15	39					0	0	0.010504	0	0
KL	9365	broad.mit.edu	37	13	33628071	33628071	+	Silent	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr13:33628071A>G	uc001uus.2	+	2	995	c.987A>G	c.(985-987)AAA>AAG	p.K329K	KL_uc001uur.1_Silent_p.K22K	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	329	Glycosyl hydrolase-1 1.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		GGTTTGCCAAACCCGTATTTA	0.403													18	62					0	0	0.007413	0	0
DCLK1	9201	broad.mit.edu	37	13	36700097	36700097	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr13:36700097G>A	uc001uvf.2	-	2	411	c.178C>T	c.(178-180)CGT>TGT	p.R60C		NM_004734	NP_004725	O15075	DCLK1_HUMAN	doublecortin-like kinase 1	60	Doublecortin 1.				cell differentiation|central nervous system development|endosome transport|intracellular signal transduction|response to virus	integral to plasma membrane	ATP binding|protein serine/threonine kinase activity|receptor signaling protein activity			stomach(6)|ovary(2)|skin(1)	9		Breast(139;0.0147)|Lung SC(185;0.0685)|Prostate(109;0.122)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.72e-06)|Epithelial(112;4.24e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00159)|OV - Ovarian serous cystadenocarcinoma(117;0.0158)|GBM - Glioblastoma multiforme(144;0.0638)		CGATAGAAACGAACTTTCTTG	0.582													26	41					0	0	0.004656	0	0
SMAD9	4093	broad.mit.edu	37	13	37427614	37427614	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr13:37427614C>T	uc001uvw.2	-	6	1545	c.1202G>A	c.(1201-1203)GGC>GAC	p.G401D	SMAD9_uc001uvx.2_Missense_Mutation_p.G364D|SMAD9_uc010tep.1_Missense_Mutation_p.G194D	NM_001127217	NP_001120689	O15198	SMAD9_HUMAN	SMAD family member 9 isoform a	401	MH2.				BMP signaling pathway|transforming growth factor beta receptor signaling pathway	cytosol|transcription factor complex	sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)		all cancers(112;3.38e-07)|Epithelial(112;1.93e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00804)|BRCA - Breast invasive adenocarcinoma(63;0.0129)|GBM - Glioblastoma multiforme(144;0.026)		GACTTCAAAGCCGTGGTGAAC	0.493													16	23					0	0	0.004007	0	0
FREM2	341640	broad.mit.edu	37	13	39264353	39264353	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr13:39264353G>A	uc001uwv.2	+	1	3181	c.2872G>A	c.(2872-2874)GAA>AAA	p.E958K		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	958	CSPG 6.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		AGATGTCTTAGAAAATGGGGC	0.463													12	37					0	0	0.013537	0	0
FREM2	341640	broad.mit.edu	37	13	39338470	39338470	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr13:39338470C>T	uc001uwv.2	+	3	5602	c.5293C>T	c.(5293-5295)CGT>TGT	p.R1765C		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	1765	Calx-beta 1.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		CCAGAATTTTCGTCTGAATTG	0.348													17	47					0	0	0.010504	0	0
SIAH3	283514	broad.mit.edu	37	13	46357632	46357632	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr13:46357632C>T	uc001vap.2	-	2	778	c.696G>A	c.(694-696)GGG>GGA	p.G232G		NM_198849	NP_942146	Q8IW03	SIAH3_HUMAN	seven in absentia homolog 3	232					multicellular organismal development|ubiquitin-dependent protein catabolic process	nucleus	metal ion binding			ovary(1)|skin(1)	2						CGAGGCAGTCCCCGTCCGTAA	0.612													15	62					0	0	0.007413	0	0
ATP7B	540	broad.mit.edu	37	13	52518245	52518245	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr13:52518245C>T	uc001vfw.2	-	14	3400	c.3243G>A	c.(3241-3243)GAG>GAA	p.E1081E	ATP7B_uc010adv.2_Silent_p.E651E|ATP7B_uc001vfx.2_Silent_p.E874E|ATP7B_uc001vfy.2_Silent_p.E970E|ATP7B_uc010tgt.1_Silent_p.E1016E|ATP7B_uc010tgu.1_Silent_p.E1033E|ATP7B_uc010tgv.1_Silent_p.E1003E|ATP7B_uc001vfv.2_Silent_p.E353E|ATP7B_uc010tgs.1_Intron	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	1081	Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		GTCCACGTACCTCTTTACAGT	0.597									Wilson_disease				12	34					0	0	0.016723	0	0
VPS36	51028	broad.mit.edu	37	13	52990024	52990024	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr13:52990024G>A	uc001vgs.2	-	14	1136	c.1102C>T	c.(1102-1104)CGT>TGT	p.R368C	VPS36_uc001vgq.2_Missense_Mutation_p.R310C	NM_016075	NP_057159	Q86VN1	VPS36_HUMAN	vacuolar protein sorting 36	368					cellular membrane organization|endosome transport|protein transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|late endosome|membrane|nucleus	lipid binding			skin(1)	1		Breast(56;0.000207)|Lung NSC(96;0.00212)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.14e-08)		GAGTCATCACGGCAAAGATGG	0.388													54	149					0	0	0.014410	0	0
KLHL1	57626	broad.mit.edu	37	13	70293603	70293603	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr13:70293603C>T	uc001vip.2	-	9	2707	c.1913G>A	c.(1912-1914)GGG>GAG	p.G638E	KLHL1_uc010thm.1_Missense_Mutation_p.G577E	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	638	Kelch 4.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		TCCGACACCCCCTCTCCTCTT	0.458													5	13					0	0	0.001168	0	0
LMO7	4008	broad.mit.edu	37	13	76382275	76382275	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr13:76382275G>A	uc001vjv.2	+	7	1917	c.1157G>A	c.(1156-1158)AGA>AAA	p.R386K	LMO7_uc010thv.1_Intron|LMO7_uc001vjt.1_Intron|LMO7_uc010thw.1_Intron|LMO7_uc001vjw.1_Missense_Mutation_p.R292K	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	671						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		GACTTGAAGAGATGGGAGGCC	0.527													12	11					0	0	0.020292	0	0
ABCC4	10257	broad.mit.edu	37	13	95726485	95726485	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr13:95726485G>A	uc001vmd.3	-	23	3019	c.2900C>T	c.(2899-2901)TCC>TTC	p.S967F	ABCC4_uc010afk.2_Missense_Mutation_p.S920F	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	967	Helical; (Potential).|ABC transmembrane type-1 2.				platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	CAGAATCAGGGACCCAAAGGC	0.413													6	22					0	0	0.001984	0	0
COL4A1	1282	broad.mit.edu	37	13	110855923	110855923	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr13:110855923G>A	uc001vqw.3	-	18	1111	c.989C>T	c.(988-990)CCA>CTA	p.P330L	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	330	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			AATTCCAGGTGGGCCAGGAGG	0.498													35	100					0	0	0.008740	0	0
ANKRD10	55608	broad.mit.edu	37	13	111558407	111558407	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr13:111558407G>A	uc001vrn.2	-	3	563	c.428C>T	c.(427-429)GCC>GTC	p.A143V	ANKRD10_uc001vro.1_Missense_Mutation_p.A143V|ANKRD10_uc001vrp.1_Missense_Mutation_p.A143V	NM_017664	NP_060134	Q9NXR5	ANR10_HUMAN	ankyrin repeat domain 10	143	ANK 4.									central_nervous_system(1)	1	all_lung(23;3.61e-05)|Lung NSC(43;0.00144)|Lung SC(71;0.0753)|all_neural(89;0.077)|Medulloblastoma(90;0.148)		all cancers(43;0.0882)|BRCA - Breast invasive adenocarcinoma(86;0.188)|Lung(89;0.208)			CGCCACAAGGGCACTGATGCA	0.433													3	9					0	0	0.004672	0	0
OR4M1	441670	broad.mit.edu	37	14	20248616	20248616	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:20248616C>T	uc010tku.1	+	1	135	c.135C>T	c.(133-135)ATC>ATT	p.I45I		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATATCCTTATCATTTGCACCA	0.433													29	134					0	0	0.008361	0	0
OR4M1	441670	broad.mit.edu	37	14	20249248	20249248	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:20249248C>T	uc010tku.1	+	1	767	c.767C>T	c.(766-768)TCC>TTC	p.S256F		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	256	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTTGGGCCATCCATCTACATT	0.423													15	93					0	0	0.003163	0	0
OR4K2	390431	broad.mit.edu	37	14	20344669	20344669	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:20344669G>A	uc001vwh.1	+	1	243	c.243G>A	c.(241-243)ATG>ATA	p.M81I		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	81	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CCCCAAAGATGATTACAGATT	0.413													29	114					0	0	0.005443	0	0
OR4K2	390431	broad.mit.edu	37	14	20345185	20345185	+	Silent	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:20345185A>G	uc001vwh.1	+	1	759	c.759A>G	c.(757-759)CCA>CCG	p.P253P		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	253	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TCTTTGGGCCATGCATCTTCA	0.418													22	71					0	0	0.014323	0	0
OR4K1	79544	broad.mit.edu	37	14	20404491	20404491	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:20404491G>A	uc001vwj.1	+	1	666	c.666G>A	c.(664-666)TTG>TTA	p.L222L		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	222	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		CCATCATTTTGATCGGTGTCC	0.433													8	36					0	0	0.003080	0	0
OR4K14	122740	broad.mit.edu	37	14	20483185	20483185	+	Missense_Mutation	SNP	G	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:20483185G>T	uc010tky.1	-	1	168	c.168C>A	c.(166-168)CAC>CAA	p.H56Q		NM_001004712	NP_001004712	Q8NGD5	OR4KE_HUMAN	olfactory receptor, family 4, subfamily K,	56	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2e-06)	GBM - Glioblastoma multiforme(265;0.00124)		TAGGGGAGGAGTGCAGGCAGG	0.448													7	29					5.4927e-09	5.69103e-09	0.004482	1	0
RPGRIP1	57096	broad.mit.edu	37	14	21793478	21793478	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:21793478G>A	uc001wag.2	+	15	2303	c.2303G>A	c.(2302-2304)CGA>CAA	p.R768Q	RPGRIP1_uc001wah.2_Missense_Mutation_p.R410Q|RPGRIP1_uc001wai.2_Intron|RPGRIP1_uc001wak.2_Missense_Mutation_p.R243Q|RPGRIP1_uc010aim.2_Missense_Mutation_p.R151Q|RPGRIP1_uc001wal.2_Missense_Mutation_p.R127Q|RPGRIP1_uc001wam.2_Missense_Mutation_p.R85Q	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	768					response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		TGCAATAAACGAAAGAAAGCC	0.542													4	15					0	0	0.009096	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21794027	21794027	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:21794027G>A	uc001wag.2	+	16	2405	c.2405G>A	c.(2404-2406)TGG>TAG	p.W802*	RPGRIP1_uc001wah.2_Nonsense_Mutation_p.W444*|RPGRIP1_uc001wai.2_Intron|RPGRIP1_uc001wak.2_Nonsense_Mutation_p.W277*|RPGRIP1_uc010aim.2_Nonsense_Mutation_p.W185*|RPGRIP1_uc001wal.2_Nonsense_Mutation_p.W161*|RPGRIP1_uc001wam.2_Nonsense_Mutation_p.W119*	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	802	C2.				response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		AACGAGCTGTGGATTGAAATC	0.507													10	24					0	0	0.010729	0	0
OR4E2	26686	broad.mit.edu	37	14	22134166	22134166	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:22134166G>A	uc010tmd.1	+	1	870	c.870G>A	c.(868-870)AGG>AGA	p.R290R		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	290	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		ACACCTTGAGGAATGAGGAGG	0.448													6	16					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	14	22192510	22192510	+	RNA	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:22192510G>A	uc001wbn.2	+	2		c.413G>A								Homo sapiens mRNA for T cell receptor alpha variable 3, partial cds, clone: SEB 36.																		CCTTCCACCTGAAGAAACCAT	0.493													27	32					0	0	0.021523	0	0
RIPK3	11035	broad.mit.edu	37	14	24808773	24808773	+	Silent	SNP	G	A	A	rs140844433		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:24808773G>A	uc001wpb.2	-	2	261	c.51C>T	c.(49-51)TCC>TCT	p.S17S	RIPK3_uc001wpa.2_5'Flank|RIPK3_uc010alq.2_RNA|RIPK3_uc010toi.1_5'UTR|RIPK3_uc010toj.1_Silent_p.S17S	NM_006871	NP_006862	Q9Y572	RIPK3_HUMAN	receptor-interacting serine-threonine kinase 3	17					apoptosis|induction of apoptosis by extracellular signals	cytoplasm	ATP binding|protein binding|transcription coactivator activity			central_nervous_system(2)|ovary(1)|lung(1)	4				GBM - Glioblastoma multiforme(265;0.0181)		GTTCCTCGATGGACACCAAGG	0.677													32	79					0	0	0.019004	0	0
HEATR5A	25938	broad.mit.edu	37	14	31852855	31852855	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:31852855G>A	uc001wrf.3	-	4	666	c.589C>T	c.(589-591)CGT>TGT	p.R197C	HEATR5A_uc010ami.2_Missense_Mutation_p.R95C|HEATR5A_uc001wrg.1_Missense_Mutation_p.R79C|HEATR5A_uc010tpk.1_Missense_Mutation_p.R490C	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	HEAT repeat containing 5A	484							binding			ovary(1)	1	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		TCAAGGCAACGATCCAAGAGT	0.468													36	104					0	0	0.009718	0	0
SLC25A21	89874	broad.mit.edu	37	14	37203758	37203758	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:37203758C>T	uc001wtz.1	-	4	534	c.224G>A	c.(223-225)GGA>GAA	p.G75E		NM_030631	NP_085134	Q9BQT8	ODC_HUMAN	solute carrier family 25 (mitochondrial	75	Solcar 1.|Helical; Name=2; (Potential).				lysine catabolic process	integral to membrane|mitochondrial inner membrane	alpha-ketoglutarate transmembrane transporter activity|binding			skin(1)	1	Esophageal squamous(585;0.164)|Breast(36;0.179)|Hepatocellular(127;0.213)		Lung(8;2.16e-08)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.0112)|all cancers(34;0.0274)|LUSC - Lung squamous cell carcinoma(13;0.149)	GBM - Glioblastoma multiforme(112;0.00204)		TGGCAGAATTCCCTTGTAAAA	0.388													5	17					0	0	0.001168	0	0
ABHD12B	145447	broad.mit.edu	37	14	51352531	51352531	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:51352531G>A	uc001wys.2	+	7	595	c.580G>A	c.(580-582)GAT>AAT	p.D194N	ABHD12B_uc001wyq.2_Missense_Mutation_p.D87N|ABHD12B_uc001wyr.2_Missense_Mutation_p.D117N|ABHD12B_uc010any.2_Intron	NM_181533	NP_853511	Q7Z5M8	AB12B_HUMAN	abhydrolase domain containing 12B isoform b	194							hydrolase activity			breast(1)	1	all_epithelial(31;0.00481)|Breast(41;0.148)					ACTGACTACGGATGCCATTTG	0.517													34	96					0	0	0.010818	0	0
PTGER2	5732	broad.mit.edu	37	14	52781928	52781928	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:52781928A>G	uc001wzr.2	+	1	913	c.662A>G	c.(661-663)AAC>AGC	p.N221S		NM_000956	NP_000947	P43116	PE2R2_HUMAN	prostaglandin E receptor 2 (subtype EP2), 53kDa	221	Helical; Name=5; (Potential).					integral to plasma membrane	prostaglandin E receptor activity			lung(1)|breast(1)	2	Breast(41;0.0639)|all_epithelial(31;0.0729)				Alprostadil(DB00770)|Iloprost(DB01088)	GTCATTCTCAACCTCATCCGC	0.547													12	33					0	0	0.013537	0	0
TXNDC16	57544	broad.mit.edu	37	14	52899126	52899126	+	Missense_Mutation	SNP	T	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:52899126T>A	uc001wzs.2	-	21	2823	c.2374A>T	c.(2374-2376)ATT>TTT	p.I792F	TXNDC16_uc010tqu.1_Missense_Mutation_p.I787F|TXNDC16_uc010aoe.2_RNA	NM_020784	NP_065835	Q9P2K2	TXD16_HUMAN	thioredoxin domain containing 16 isoform 1	792					cell redox homeostasis	extracellular region					0	Breast(41;0.0716)					AGAGTTTCAATCGGTTCTTTT	0.363													18	45					0	0	0.006122	0	0
RTN1	6252	broad.mit.edu	37	14	60194302	60194302	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:60194302G>A	uc001xen.1	-	3	1309	c.1100C>T	c.(1099-1101)TCG>TTG	p.S367L	RTN1_uc001xem.1_5'UTR	NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	367					neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		GGTTTCATACGATAATCCCTT	0.622													6	18					0	0	0.001984	0	0
C14orf181	400223	broad.mit.edu	37	14	69262645	69262645	+	Silent	SNP	G	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:69262645G>T	uc001xkj.1	-	1	546	c.367C>A	c.(367-369)CGA>AGA	p.R123R	ZFP36L1_uc001xkh.1_5'Flank|ZFP36L1_uc001xki.1_5'Flank	NM_207442	NP_997325			hypothetical protein LOC400223												0				all cancers(60;0.002)|BRCA - Breast invasive adenocarcinoma(234;0.00204)|OV - Ovarian serous cystadenocarcinoma(108;0.0399)		AGACGTGGTCGACAGGTGCCC	0.751													8	18					0.00307968	0.00314642	0.003080	1	0
EXD2	55218	broad.mit.edu	37	14	69701576	69701576	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:69701576C>T	uc001xkt.2	+	7	1161	c.502C>T	c.(502-504)CGA>TGA	p.R168*	EXD2_uc001xku.2_Nonsense_Mutation_p.R38*|EXD2_uc001xkv.2_Nonsense_Mutation_p.R293*|EXD2_uc001xkw.2_Nonsense_Mutation_p.R168*|EXD2_uc010aqt.2_Nonsense_Mutation_p.R293*|EXD2_uc010tte.1_Nonsense_Mutation_p.R293*|EXD2_uc001xky.2_Nonsense_Mutation_p.R168*	NM_018199	NP_060669	Q9NVH0	EXD2_HUMAN	exonuclease 3'-5' domain containing 2	168					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding				0						CATCCCATTTCGAAGCAAAGG	0.443													16	42					0	0	0.006122	0	0
SMOC1	64093	broad.mit.edu	37	14	70459163	70459163	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:70459163G>A	uc001xls.1	+	6	809	c.556G>A	c.(556-558)GAG>AAG	p.E186K	SMOC1_uc001xlt.1_Missense_Mutation_p.E186K	NM_022137	NP_071420	Q9H4F8	SMOC1_HUMAN	secreted modular calcium-binding protein 1	186					cell differentiation|eye development|limb development|regulation of osteoblast differentiation|signal transduction	basement membrane	calcium ion binding			upper_aerodigestive_tract(1)|pancreas(1)	2				all cancers(60;0.00417)|BRCA - Breast invasive adenocarcinoma(234;0.0119)|OV - Ovarian serous cystadenocarcinoma(108;0.028)		ACCCACGATGGAGACCCAGCC	0.438													8	35					0	0	0.016723	0	0
SLC8A3	6547	broad.mit.edu	37	14	70634876	70634876	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:70634876G>A	uc001xly.2	-	2	1018	c.264C>T	c.(262-264)TTC>TTT	p.F88F	SLC8A3_uc001xlw.2_Silent_p.F88F|SLC8A3_uc001xlx.2_Silent_p.F88F|SLC8A3_uc001xlz.2_Silent_p.F88F|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	88	Helical; (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		ACACCCCAAGGAACATGTATA	0.493													6	20					0	0	0.001168	0	0
ADAM20	8748	broad.mit.edu	37	14	70991342	70991342	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:70991342G>A	uc001xme.2	-	2	528	c.283C>T	c.(283-285)CCT>TCT	p.P95S		NM_003814	NP_003805	O43506	ADA20_HUMAN	ADAM metallopeptidase domain 20 preproprotein	45					proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.133)|Kidney(31;0.188)	all cancers(60;0.00294)|BRCA - Breast invasive adenocarcinoma(234;0.00668)|OV - Ovarian serous cystadenocarcinoma(108;0.0344)		ACCTTCAAAGGGATCACCACT	0.532													7	10					0	0	0.004482	0	0
COQ6	51004	broad.mit.edu	37	14	74428024	74428024	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:74428024C>T	uc001xph.2	+	9	1120	c.1040C>T	c.(1039-1041)CCT>CTT	p.P347L	ENTPD5_uc001xpi.2_Intron|COQ6_uc001xpe.2_Missense_Mutation_p.P272L|COQ6_uc001xpf.2_Missense_Mutation_p.P272L|COQ6_uc010tuk.1_Missense_Mutation_p.P322L|COQ6_uc001xpg.2_Missense_Mutation_p.P347L	NM_182476	NP_872282	Q9Y2Z9	COQ6_HUMAN	coenzyme Q6 homolog isoform a	347					ubiquinone biosynthetic process	mitochondrion	flavin adenine dinucleotide binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen				0				BRCA - Breast invasive adenocarcinoma(234;0.00337)		GTTCTGTTTCCTCTTGGGTTG	0.587													6	30					0	0	0.003080	0	0
C14orf115	55237	broad.mit.edu	37	14	74824603	74824603	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:74824603G>A	uc001xpw.3	+	2	1308	c.1117G>A	c.(1117-1119)GAG>AAG	p.E373K		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	373					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		GGGCATGGAGGAGCTAGAGAA	0.647													13	32					0	0	0.016723	0	0
C14orf115	55237	broad.mit.edu	37	14	74825172	74825172	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:74825172C>T	uc001xpw.3	+	2	1877	c.1686C>T	c.(1684-1686)GTC>GTT	p.V562V		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	562					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		AGGTGCCGGTCCCCACCTTGG	0.632													24	58					0	0	0.018920	0	0
LTBP2	4053	broad.mit.edu	37	14	74969619	74969619	+	Missense_Mutation	SNP	C	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:74969619C>A	uc001xqa.2	-	34	5294	c.4907G>T	c.(4906-4908)TGC>TTC	p.C1636F		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	1636	TB 4.				protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		AGCCACGTTGCACAGCTGAGC	0.612													14	47					4.7546e-09	4.93402e-09	0.004007	1	0
C14orf4	64207	broad.mit.edu	37	14	77493062	77493062	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:77493062G>A	uc001xsy.2	-	1	1973	c.1074C>T	c.(1072-1074)AGC>AGT	p.S358S		NM_024496	NP_078772	Q9H1B7	I2BPL_HUMAN	chromosome 14 open reading frame 4	358	Potential.					nucleus					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.00347)|KIRC - Kidney renal clear cell carcinoma(182;0.0878)		GCAGGCTCTCGCTCAGCTCGG	0.682													9	25					0	0	0.008291	0	0
STON2	85439	broad.mit.edu	37	14	81862472	81862472	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:81862472C>T	uc010tvu.1	-	2	340	c.139G>A	c.(139-141)GAG>AAG	p.E47K	STON2_uc001xvk.1_Missense_Mutation_p.E47K|STON2_uc010atc.1_Missense_Mutation_p.E47K	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	47					endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		GAGGAGCTCTCGGACTGGTCT	0.577													19	40					0	0	0.007413	0	0
CCDC88C	440193	broad.mit.edu	37	14	91770241	91770241	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:91770241C>T	uc010aty.2	-	20	3538	c.3439G>A	c.(3439-3441)GAG>AAG	p.E1147K		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1147	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				TTCTCCGTCTCCTTGGCCGTG	0.652													21	58					0	0	0.016522	0	0
FBLN5	10516	broad.mit.edu	37	14	92336611	92336611	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:92336611G>A	uc001xzx.3	-	11	1777	c.1304C>T	c.(1303-1305)TCC>TTC	p.S435F	TC2N_uc001xzv.3_5'Flank|FBLN5_uc010aud.2_Missense_Mutation_p.S440F|FBLN5_uc010aue.2_Missense_Mutation_p.S476F|FBLN5_uc001xzw.2_RNA	NM_006329	NP_006320	Q9UBX5	FBLN5_HUMAN	fibulin 5 precursor	435					cell-matrix adhesion|elastic fiber assembly|protein localization at cell surface|regulation of removal of superoxide radicals	extracellular space|proteinaceous extracellular matrix|soluble fraction	calcium ion binding|integrin binding|protein C-terminus binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		all_cancers(154;0.0722)				TCGGATCACGGAGCTGCCTCT	0.572													28	87					0	0	0.007291	0	0
PPP4R4	57718	broad.mit.edu	37	14	94674843	94674843	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:94674843C>T	uc001ycs.1	+	3	388	c.234C>T	c.(232-234)CTC>CTT	p.L78L	PPP4R4_uc001ycr.2_Silent_p.L78L	NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	78						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						TTGCAAATCTCCCATTTTTGA	0.373													6	14					0	0	0.001984	0	0
SERPINA10	51156	broad.mit.edu	37	14	94756493	94756493	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:94756493C>T	uc001yct.2	-	2	904	c.438G>A	c.(436-438)AAG>AAA	p.K146K	SERPINA10_uc001ycu.3_Silent_p.K146K	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	146					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		CTCTGAGTCCCTTAAAGAGGG	0.572													20	62					0	0	0.010504	0	0
SERPINA3	12	broad.mit.edu	37	14	95081240	95081241	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:95081240_95081241GG>AA	uc001ydp.2	+	2	541_542	c.462_463GG>AA	c.(460-465)ACGGAG>ACAAAG	p.E155K	SERPINA3_uc001ydo.3_Missense_Mutation_p.E180K|SERPINA3_uc010avf.1_RNA|SERPINA3_uc001ydr.2_RNA|SERPINA3_uc001ydq.2_Missense_Mutation_p.E155K|SERPINA3_uc001yds.2_Missense_Mutation_p.E155K|SERPINA3_uc010avg.2_Missense_Mutation_p.E155K	NM_001085	NP_001076	P01011	AACT_HUMAN	serpin peptidase inhibitor, clade A, member 3	155					acute-phase response|maintenance of gastrointestinal epithelium|regulation of lipid metabolic process|regulation of proteolysis	extracellular region|nucleus	DNA binding|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|skin(1)	6		all_cancers(154;0.0525)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.212)|Epithelial(152;0.228)		ACAGGTTCACGGAGGATGCCAA	0.53													10	30					0	0	0.004672	0	0
EML1	2009	broad.mit.edu	37	14	100374016	100374016	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:100374016C>T	uc001ygs.2	+	10	1119	c.1050C>T	c.(1048-1050)GAC>GAT	p.D350D	EML1_uc010avt.1_Silent_p.D337D|EML1_uc010tww.1_Silent_p.D338D|EML1_uc001ygq.2_Silent_p.D369D|EML1_uc001ygr.2_Silent_p.D369D	NM_004434	NP_004425	O00423	EMAL1_HUMAN	echinoderm microtubule associated protein like 1	350	WD 2.					cytoplasm|microtubule|microtubule associated complex	calcium ion binding|protein binding			large_intestine(2)|pancreas(1)|ovary(1)|skin(1)	5		Melanoma(154;0.0879)|all_epithelial(191;0.216)				ACTCCAACGACCATGTGCTCT	0.423													22	55					0	0	0.006320	0	0
C14orf73	91828	broad.mit.edu	37	14	103573827	103573827	+	Nonsense_Mutation	SNP	A	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:103573827A>T	uc001ymk.2	+	8	1724	c.1648A>T	c.(1648-1650)AAG>TAG	p.K550*		NM_001077594	NP_001071062	Q17RC7	EX3L4_HUMAN	hypothetical protein LOC91828	550											0		Melanoma(154;0.155)	Epithelial(46;0.221)			CCTCATGGACAAGGTGGTGAC	0.667													9	38					0	0	0.008291	0	0
MARK3	4140	broad.mit.edu	37	14	103969316	103969316	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:103969316C>T	uc001ymz.3	+	18	2680	c.2014C>T	c.(2014-2016)CCC>TCC	p.P672S	MARK3_uc001ymx.3_Missense_Mutation_p.P663S|MARK3_uc001ymw.3_Missense_Mutation_p.P648S|MARK3_uc001yna.3_Missense_Mutation_p.P632S|MARK3_uc001ymy.3_Missense_Mutation_p.P578S|MARK3_uc010awp.2_Missense_Mutation_p.P671S|MARK3_uc010tyb.1_Missense_Mutation_p.P467S|MARK3_uc010awq.2_Missense_Mutation_p.P245S|MARK3_uc001ynd.2_Missense_Mutation_p.P80S	NM_001128918	NP_001122390	P27448	MARK3_HUMAN	MAP/microtubule affinity-regulating kinase 3	672							ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(2)|ovary(1)|stomach(1)	4		Melanoma(154;0.155)	Epithelial(46;0.241)			TTCAATGGATCCCGGGGACAT	0.507													13	34					0	0	0.016723	0	0
TDRD9	122402	broad.mit.edu	37	14	104460697	104460697	+	Silent	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:104460697A>G	uc001yom.3	+	10	1239	c.1209A>G	c.(1207-1209)GAA>GAG	p.E403E	TDRD9_uc001yon.3_Silent_p.E141E	NM_153046	NP_694591	Q8NDG6	TDRD9_HUMAN	tudor domain containing 9	403	Helicase C-terminal.				cell differentiation|DNA methylation involved in gamete generation|fertilization|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	nucleus|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0768)				ATATGCATGAACTTCTCACAA	0.333													43	156					0	0	0.014410	0	0
ADAM6	8755	broad.mit.edu	37	14	106110952	106110952	+	RNA	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:106110952G>A	uc010tyt.1	-	3640		c.60809C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_RNA					Parts of antibodies, mostly variable regions.												0						GAGTCCTGAGGACTGTAGGAC	0.622													18	40					0	0	0.006122	0	0
ADAM6	8755	broad.mit.edu	37	14	106208519	106208519	+	RNA	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:106208519G>A	uc010tyt.1	-	3627		c.58695C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_5'UTR|uc001ysf.2_5'UTR					Parts of antibodies, mostly variable regions.												0						TGGGTTTTGGGGGGAAGAGGA	0.612													21	70					0	0	0.021523	0	0
ADAM6	8755	broad.mit.edu	37	14	106236004	106236004	+	RNA	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:106236004G>A	uc010tyt.1	-	3616		c.57940C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						CTTTGGTTTTGGAGATGGTTT	0.612													75	207					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	15	20495407	20495407	+	RNA	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:20495407G>A	uc001ytf.1	+	5		c.610G>A								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		TTCTGTGTGAGGAAAATGAAT	0.393													11	102					0	0	0.013537	0	0
MKRN3	7681	broad.mit.edu	37	15	23811087	23811087	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:23811087G>A	uc001ywh.3	+	1	634	c.158G>A	c.(157-159)AGG>AAG	p.R53K	MKRN3_uc001ywi.2_Missense_Mutation_p.R53K|MKRN3_uc010ayi.1_Missense_Mutation_p.R53K	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	53						ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		CATGCGGCAAGGGGCTGGGCC	0.692													13	44					0	0	0.020292	0	0
C15orf2	23742	broad.mit.edu	37	15	24922344	24922344	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:24922344C>T	uc001ywo.2	+	1	1804	c.1330C>T	c.(1330-1332)CTT>TTT	p.L444F		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	444	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TATCCCTCCACTTTCCACCAC	0.527													34	71					0	0	0.015359	0	0
C15orf55	256646	broad.mit.edu	37	15	34648236	34648236	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:34648236G>A	uc001zif.2	+	7	2098	c.1943G>A	c.(1942-1944)GGA>GAA	p.G648E	C15orf55_uc010ucc.1_Missense_Mutation_p.G676E|C15orf55_uc010ucd.1_Missense_Mutation_p.G666E	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	648						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		CCTCTGCAAGGACAAGGGTTA	0.562			T	BRD3|BRD4	lethal midline carcinoma								17	45					0	0	0.007413	0	0
LOC723972	723972	broad.mit.edu	37	15	35530049	35530049	+	RNA	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:35530049G>A	uc001ziy.2	+	1		c.523G>A				NR_003144				Homo sapiens hepatopoietin PCn127 mRNA, complete cds.												0						ggaggatgaggatgaggagga	0.229													5	11					0	0	0.014758	0	0
RASGRP1	10125	broad.mit.edu	37	15	38803888	38803888	+	Missense_Mutation	SNP	T	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:38803888T>A	uc001zke.3	-	8	1061	c.883A>T	c.(883-885)ATG>TTG	p.M295L	RASGRP1_uc010bbe.2_RNA|RASGRP1_uc010bbf.2_Missense_Mutation_p.M157L|RASGRP1_uc010bbg.2_Missense_Mutation_p.M157L|RASGRP1_uc001zkd.3_Missense_Mutation_p.M295L	NM_005739	NP_005730	O95267	GRP1_HUMAN	RAS guanyl releasing protein 1 isoform a	295	Ras-GEF.				cell differentiation|platelet activation|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|lipid binding|protein binding			large_intestine(1)|ovary(1)	2		all_cancers(109;6.38e-17)|all_epithelial(112;5.51e-15)|Lung NSC(122;2.12e-11)|all_lung(180;5.63e-10)|Melanoma(134;0.0574)		GBM - Glioblastoma multiforme(113;1.97e-07)|BRCA - Breast invasive adenocarcinoma(123;0.00248)		ATCACAGCCATCAGTGTATTG	0.473													8	24					0	0	0.003080	0	0
DLL4	54567	broad.mit.edu	37	15	41229024	41229024	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:41229024G>A	uc001zng.1	+	9	2159	c.1839G>A	c.(1837-1839)TTG>TTA	p.L613L		NM_019074	NP_061947	Q9NR61	DLL4_HUMAN	delta-like 4 protein precursor	613	Cytoplasmic (Potential).				blood circulation|cell communication|cell differentiation|Notch receptor processing|Notch signaling pathway	integral to membrane|plasma membrane	calcium ion binding|Notch binding			breast(2)	2		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;1.07e-05)|COAD - Colon adenocarcinoma(120;0.15)|BRCA - Breast invasive adenocarcinoma(123;0.164)		ACCACACATTGGACTATAATC	0.557													21	41					0	0	0.014323	0	0
OIP5	11339	broad.mit.edu	37	15	41611941	41611941	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:41611941G>A	uc001znp.2	-	3	487	c.427C>T	c.(427-429)CCC>TCC	p.P143S		NM_007280	NP_009211	O43482	MS18B_HUMAN	Opa interacting protein 5	143					cell communication|cell division|CenH3-containing nucleosome assembly at centromere|mitosis	Cajal body|chromatin|chromosome, centromeric region	protein binding				0		all_cancers(109;4.16e-14)|all_epithelial(112;7.09e-12)|Lung NSC(122;1.14e-09)|all_lung(180;2.56e-08)|Melanoma(134;0.091)|Colorectal(260;0.175)		OV - Ovarian serous cystadenocarcinoma(18;1.49e-16)|GBM - Glioblastoma multiforme(113;1.29e-06)|BRCA - Breast invasive adenocarcinoma(123;0.163)		AAACCAACGGGAATCCCACAA	0.403													9	22					0	0	0.004482	0	0
SPTBN5	51332	broad.mit.edu	37	15	42147787	42147787	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:42147787G>A	uc001zos.2	-	54	9406	c.9073C>T	c.(9073-9075)CAG>TAG	p.Q3025*		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	3060	Spectrin 27.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		GCTGCTGTCTGCTGCAGCCGC	0.632													11	17					0	0	0.010729	0	0
SPTBN5	51332	broad.mit.edu	37	15	42159820	42159820	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:42159820G>A	uc001zos.2	-	35	6456	c.6123C>T	c.(6121-6123)GCC>GCT	p.A2041A	hsa-mir-4310|MI0015840_5'Flank	NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	2076	Spectrin 17.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		AGCTCCCCAAGGCACTGGTTT	0.577													48	137					0	0	0.014410	0	0
UBR1	197131	broad.mit.edu	37	15	43314912	43314912	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:43314912G>A	uc001zqq.2	-	26	2893	c.2827C>T	c.(2827-2829)CAT>TAT	p.H943Y	UBR1_uc010udk.1_Missense_Mutation_p.H943Y	NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	943					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		GAAGCCTTATGATAAAAGTCA	0.338													16	50					0	0	0.004990	0	0
TMOD2	29767	broad.mit.edu	37	15	52065922	52065922	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:52065922C>T	uc002abk.2	+	4	518	c.297C>T	c.(295-297)ATC>ATT	p.I99I	TMOD2_uc002abl.3_Silent_p.I99I|TMOD2_uc010bfb.2_Silent_p.I55I	NM_014548	NP_055363	Q9NZR1	TMOD2_HUMAN	neuronal tropomodulin isoform a	99					nervous system development	cytoplasm|cytoskeleton	actin binding|tropomyosin binding			ovary(2)	2				all cancers(107;0.00435)		GAGTCTTTATCCCTAAAGAAA	0.418													18	37					0	0	0.008871	0	0
MYO5C	55930	broad.mit.edu	37	15	52571166	52571166	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:52571166C>T	uc010bff.2	-	4	490	c.353G>A	c.(352-354)GGA>GAA	p.G118E	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA|MYO5C_uc010ugc.1_Missense_Mutation_p.G81E|MIR1266_hsa-mir-1266|MI0006403_5'Flank	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	118	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		GATGGCATCTCCGTATATTGG	0.488													30	55					0	0	0.010818	0	0
RAB27A	5873	broad.mit.edu	37	15	55497898	55497898	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:55497898G>A	uc002aco.2	-	7	706	c.473C>T	c.(472-474)CCC>CTC	p.P158L	RAB27A_uc002acr.2_Missense_Mutation_p.P158L|RAB27A_uc002acp.2_Missense_Mutation_p.P158L|RAB27A_uc002acq.2_Missense_Mutation_p.P158L	NM_183234	NP_899057	P51159	RB27A_HUMAN	Ras-related protein Rab-27A	158					small GTPase mediated signal transduction	dendrite|exocytic vesicle|late endosome|lysosome|melanosome	GTP binding|GTPase activity			ovary(1)	1				all cancers(107;0.0273)|GBM - Glioblastoma multiforme(80;0.0993)		TTCAAAGTAGGGGATTCTGGA	0.428													16	52					0	0	0.003163	0	0
ALDH1A2	8854	broad.mit.edu	37	15	58257932	58257932	+	Missense_Mutation	SNP	C	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:58257932C>A	uc002aex.2	-	8	950	c.892G>T	c.(892-894)GAT>TAT	p.D298Y	ALDH1A2_uc002aey.2_Missense_Mutation_p.D260Y|ALDH1A2_uc010ugv.1_Missense_Mutation_p.D277Y|ALDH1A2_uc010ugw.1_Missense_Mutation_p.D269Y|ALDH1A2_uc002aew.2_Missense_Mutation_p.D202Y	NM_003888	NP_003879	O94788	AL1A2_HUMAN	aldehyde dehydrogenase 1A2 isoform 1	298					negative regulation of cell proliferation|neural tube development|response to cytokine stimulus	nucleus	3-chloroallyl aldehyde dehydrogenase activity|retinal binding|retinal dehydrogenase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(80;0.152)|all cancers(107;0.18)	NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	CAGTCAGCATCAGCAAAAATA	0.413													8	33					5.18039e-06	5.32564e-06	0.003080	1	0
NARG2	79664	broad.mit.edu	37	15	60715915	60715915	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:60715915G>A	uc002agp.2	-	16	3102	c.2867C>T	c.(2866-2868)TCC>TTC	p.S956F	NARG2_uc002ago.2_Missense_Mutation_p.S819F	NM_024611	NP_078887	Q659A1	NARG2_HUMAN	NMDA receptor regulated 2 isoform a	956						nucleus				ovary(1)|lung(1)	2						GGTTTCCATGGAAACTGGATT	0.418													8	14					0	0	0.003080	0	0
HERC1	8925	broad.mit.edu	37	15	64017698	64017698	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:64017698T>C	uc002amp.2	-	18	3509	c.3361A>G	c.(3361-3363)ATT>GTT	p.I1121V	HERC1_uc010uil.1_Intron	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	1121					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						GCAGGATCAATTAGTTCTGGC	0.423													27	58					0	0	0.007291	0	0
IGDCC4	57722	broad.mit.edu	37	15	65676527	65676528	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:65676527_65676528GG>AA	uc002aou.1	-	20	3782_3783	c.3572_3573CC>TT	c.(3571-3573)GCC>GTT	p.A1191V	IGDCC4_uc002aot.1_Missense_Mutation_p.A779V	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	1191	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						CTGGCCCGGGGGCTGCCAGCTC	0.668													10	23					0	0	0.004672	0	0
DENND4A	10260	broad.mit.edu	37	15	66025116	66025116	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:66025116G>A	uc002aph.2	-	8	1459	c.1081C>T	c.(1081-1083)CCT>TCT	p.P361S	DENND4A_uc002api.2_Missense_Mutation_p.P361S|DENND4A_uc002apj.3_Missense_Mutation_p.P361S|DENND4A_uc010ujj.1_Missense_Mutation_p.P361S	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	361	DENN.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						GGTCTCTGAGGAGATGGAAAA	0.343													6	21					0	0	0.001984	0	0
CSK	1445	broad.mit.edu	37	15	75094689	75094689	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:75094689C>T	uc010bkb.1	+	14	1371	c.1188C>T	c.(1186-1188)GTC>GTT	p.V396V	CSK_uc002ays.2_Silent_p.V396V|CSK_uc010bkc.1_Silent_p.V205V	NM_001127190	NP_001120662	P41240	CSK_HUMAN	c-src tyrosine kinase	396	Protein kinase.				blood coagulation|epidermal growth factor receptor signaling pathway|T cell costimulation|T cell receptor signaling pathway	centrosome|cytosol|Golgi apparatus	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein C-terminus binding			lung(2)|central_nervous_system(1)	3						AGGACGTCGTCCCTCGGGTGG	0.652													20	52					0	0	0.014323	0	0
Unknown	0	broad.mit.edu	37	15	76071779	76071779	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:76071779A>T	uc010umm.1	+	3	291	c.214A>T	c.(214-216)ATA>TTA	p.I72L						SubName: Full=cDNA FLJ59077, highly similar to Golgin subfamily A member 6;																		AAGCTCCGCAATAATCAATCA	0.502													5	21					0	0	0.014758	0	0
C15orf27	123591	broad.mit.edu	37	15	76430211	76430211	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:76430211C>T	uc002bbq.2	+	3	357	c.202C>T	c.(202-204)CTG>TTG	p.L68L	C15orf27_uc010bkp.2_5'UTR|C15orf27_uc002bbr.2_5'UTR	NM_152335	NP_689548	Q2M3C6	CO027_HUMAN	hypothetical protein LOC123591	68						integral to membrane					0						CCTGTCAAATCTGGACGAAGA	0.468													19	51					0	0	0.012319	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79069868	79069868	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:79069868A>C	uc002bej.3	-	9	1596	c.1385T>G	c.(1384-1386)GTG>GGG	p.V462G	ADAMTS7_uc010und.1_Intron|ADAMTS7_uc002bek.1_Missense_Mutation_p.V462G	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	462	Disintegrin.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						GCCAGGTGGCACCGAGGGGAA	0.642													4	11					0	0	0.009096	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79069870	79069870	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:79069870C>T	uc002bej.3	-	9	1594	c.1383G>A	c.(1381-1383)TCG>TCA	p.S461S	ADAMTS7_uc010und.1_Intron|ADAMTS7_uc002bek.1_Silent_p.S461S	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	461					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						CAGGTGGCACCGAGGGGAAGT	0.642													3	11					0	0	0.004672	0	0
SLC28A1	9154	broad.mit.edu	37	15	85478734	85478734	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:85478734G>A	uc002blg.2	+	15	1768	c.1566G>A	c.(1564-1566)AGG>AGA	p.R522R	SLC28A1_uc010bnb.2_Silent_p.R522R|SLC28A1_uc010upe.1_Intron|SLC28A1_uc010upf.1_Silent_p.R522R|SLC28A1_uc010upg.1_Silent_p.R522R	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	522					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			TCGGCGACAGGAAGCAGTGGA	0.627													41	87					0	0	0.008740	0	0
ACAN	176	broad.mit.edu	37	15	89384991	89384991	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:89384991G>A	uc010upo.1	+	5	1024	c.650G>A	c.(649-651)CGG>CAG	p.R217Q	ACAN_uc002bmx.2_Missense_Mutation_p.R217Q|ACAN_uc010upp.1_Missense_Mutation_p.R217Q|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	217					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CACACTCCCCGGGAAGGCTGC	0.567													23	68					0	0	0.004656	0	0
SLCO3A1	28232	broad.mit.edu	37	15	92705993	92705993	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:92705993C>T	uc002bqx.2	+	10	1962	c.1761C>T	c.(1759-1761)ATC>ATT	p.I587I	SLCO3A1_uc002bqy.2_Silent_p.I587I|SLCO3A1_uc002bqz.1_Silent_p.I529I	NM_013272	NP_037404	Q9UIG8	SO3A1_HUMAN	solute carrier organic anion transporter family,	587	Helical; Name=11; (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	sodium-independent organic anion transmembrane transporter activity			skin(1)	1	Lung NSC(78;0.0158)|all_lung(78;0.0255)		BRCA - Breast invasive adenocarcinoma(143;0.0841)			CAGGCTTCATCCCTCCACCCC	0.562													19	56					0	0	0.007413	0	0
CHSY1	22856	broad.mit.edu	37	15	101718145	101718145	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:101718145G>A	uc002bwt.1	-	4	2340	c.1857C>T	c.(1855-1857)TCC>TCT	p.S619S	CHSY1_uc010usd.1_Silent_p.S347S	NM_014918	NP_055733	Q86X52	CHSS1_HUMAN	chondroitin sulfate synthase 1	619	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity				0	Lung NSC(78;0.00217)|all_lung(78;0.00271)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			TGTTAAACTGGGAGGATCCTA	0.473													11	37					0	0	0.008291	0	0
WASH3P	374666	broad.mit.edu	37	15	102516448	102516448	+	Missense_Mutation	SNP	C	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr15:102516448C>G	uc002cdi.2	+	11	2194	c.774C>G	c.(772-774)GAC>GAG	p.D258E	WASH3P_uc002cdl.2_Missense_Mutation_p.D258E|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Missense_Mutation_p.D258E|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_RNA	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						CAGAGGAGGACGAGGACGACT	0.657													4	71					0	0	0.009096	0	0
E4F1	1877	broad.mit.edu	37	16	2284180	2284180	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:2284180C>T	uc002cpm.2	+	10	1432	c.1384C>T	c.(1384-1386)CCG>TCG	p.P462S	E4F1_uc010bsi.2_Missense_Mutation_p.P462S|E4F1_uc010bsj.2_Intron|DNASE1L2_uc002cpn.2_5'Flank|DNASE1L2_uc002cpo.2_5'Flank|DNASE1L2_uc002cpp.2_5'Flank|DNASE1L2_uc002cpq.2_5'Flank	NM_004424	NP_004415	Q66K89	E4F1_HUMAN	p120E4F	462	Mediates interaction with CDKN2A.|Interaction with BMI1.				cell division|cell proliferation|interspecies interaction between organisms|mitosis|regulation of growth	cytoplasm|nucleoplasm	DNA binding|ligase activity|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						AGGGCCGAGGCCGTTCGCCTG	0.701													12	25					0	0	0.013537	0	0
ADCY9	115	broad.mit.edu	37	16	4164632	4164632	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:4164632G>A	uc002cvx.2	-	2	1351	c.812C>T	c.(811-813)TCG>TTG	p.S271L		NM_001116	NP_001107	O60503	ADCY9_HUMAN	adenylate cyclase 9	271	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6						GGCTCCGGGCGAGGGGAAGCA	0.617													5	24					0	0	0.001168	0	0
ACSM5	54988	broad.mit.edu	37	16	20448599	20448599	+	Silent	SNP	C	T	T	rs9652590	byFrequency	TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:20448599C>T	uc002dhe.2	+	12	1593	c.1446C>T	c.(1444-1446)ATC>ATT	p.I482I		NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	482					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						GCTACCGGATCGGGCCTGTTG	0.552													23	64					0	0	0.021523	0	0
ACSM2B	348158	broad.mit.edu	37	16	20570715	20570715	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:20570715C>T	uc002dhj.3	-	4	442	c.232G>A	c.(232-234)GAA>AAA	p.E78K	ACSM2B_uc002dhk.3_Missense_Mutation_p.E78K|ACSM2B_uc010bwf.1_Missense_Mutation_p.E78K	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	78					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						CACATTAATTCCTTCCCCTTC	0.557													7	24					0	0	0.001984	0	0
OTOA	146183	broad.mit.edu	37	16	21716602	21716602	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:21716602G>A	uc002djh.2	+	11	1094	c.1093G>A	c.(1093-1095)GGC>AGC	p.G365S	uc002diq.3_Intron|OTOA_uc010vbj.1_Missense_Mutation_p.G286S|OTOA_uc002dji.2_Missense_Mutation_p.G41S|OTOA_uc010vbk.1_Missense_Mutation_p.G13S	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	379					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		CTTCCAGGCTGGCGTCCAGAA	0.557													28	59					0	0	0.010818	0	0
HS3ST2	9956	broad.mit.edu	37	16	22926572	22926572	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:22926572C>T	uc002dli.2	+	2	865	c.793C>T	c.(793-795)CCG>TCG	p.P265S	HS3ST2_uc002dlj.2_RNA	NM_006043	NP_006034	Q9Y278	HS3S2_HUMAN	heparan sulfate D-glucosaminyl	265	Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 2 activity			ovary(1)|pancreas(1)	2				GBM - Glioblastoma multiforme(48;0.0299)		GCAGTACTTCCCGCTAGCTCA	0.607													54	135					0	0	0.014410	0	0
SCNN1B	6338	broad.mit.edu	37	16	23382719	23382719	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:23382719C>T	uc002dln.2	+	6	1156	c.980C>T	c.(979-981)CCC>CTC	p.P327L		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	327	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	AGGTCATACCCCTTCATCAGA	0.602													8	24					0	0	0.006214	0	0
TAOK2	9344	broad.mit.edu	37	16	29999125	29999125	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:29999125C>T	uc002dva.1	+	16	4315	c.3532C>T	c.(3532-3534)CAC>TAC	p.H1178Y	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Intron|TAOK2_uc002dvc.1_Intron|TAOK2_uc010bzm.1_Missense_Mutation_p.H1185Y|TAOK2_uc002dvd.1_Missense_Mutation_p.H1005Y	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	1178	Helical; (Potential).				actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						GTGGGCCATCCACACACTGGC	0.687													13	25					0	0	0.016723	0	0
CD2BP2	10421	broad.mit.edu	37	16	30364855	30364855	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:30364855G>A	uc002dxr.2	-	4	895	c.642C>T	c.(640-642)AAC>AAT	p.N214N	CD2BP2_uc002dxs.2_Silent_p.N214N	NM_006110	NP_006101	O95400	CD2B2_HUMAN	CD2 antigen (cytoplasmic tail) binding protein	214					assembly of spliceosomal tri-snRNP	cytoplasm|nucleoplasm|U5 snRNP	protein binding|ribonucleoprotein binding			ovary(1)	1						ACACACCAAGGTTGCCCCGGG	0.642													17	45					0	0	0.010504	0	0
SRCAP	10847	broad.mit.edu	37	16	30732570	30732570	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:30732570C>T	uc002dze.1	+	21	3699	c.3314C>T	c.(3313-3315)TCC>TTC	p.S1105F	SRCAP_uc002dzf.2_Intron|SRCAP_uc002dzg.1_Missense_Mutation_p.S962F|SRCAP_uc010bzz.1_Missense_Mutation_p.S675F	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1105	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			CCAACCTTGTCCCTAAAGCCA	0.617													37	108					0	0	0.021022	0	0
FBXL19	54620	broad.mit.edu	37	16	30958127	30958127	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:30958127C>T	uc002eab.2	+	10	1922	c.1764C>T	c.(1762-1764)TCC>TCT	p.S588S	FBXL19_uc002dzz.1_Silent_p.S276S|FBXL19_uc002eaa.1_Silent_p.S487S|ORAI3_uc002eac.2_5'Flank	NM_001099784	NP_001093254	Q6PCT2	FXL19_HUMAN	F-box and leucine-rich repeat protein 19	588	LRR 3.						DNA binding|zinc ion binding			ovary(2)|lung(1)|breast(1)	4						CAGATGCCTCCCTGCGTCTCC	0.672													6	18					0	0	0.001168	0	0
SETD1A	9739	broad.mit.edu	37	16	30995335	30995335	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:30995335C>T	uc002ead.1	+	19	5801	c.5115C>T	c.(5113-5115)TCC>TCT	p.S1705S	HSD3B7_uc002eaf.2_5'Flank|HSD3B7_uc010cac.2_5'Flank|HSD3B7_uc002eag.2_5'Flank|HSD3B7_uc002eah.2_5'Flank	NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	1705	Post-SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						GCCGGGGCTCCCTAAACTGAG	0.612													7	11					0	0	0.001984	0	0
ZNF668	79759	broad.mit.edu	37	16	31072471	31072471	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:31072471G>A	uc010caf.2	-	3	2135	c.1778C>T	c.(1777-1779)ACC>ATC	p.T593I	ZNF668_uc002eao.2_Missense_Mutation_p.T593I	NM_024706	NP_078982	Q96K58	ZN668_HUMAN	zinc finger protein 668	593	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(4)	4						CACAGGGTGGGTGCGTTCATG	0.652													34	58					0	0	0.013726	0	0
Unknown	0	broad.mit.edu	37	16	31973485	31973485	+	RNA	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:31973485G>A	uc002ect.2	+	1		c.77G>A								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:H186.																		GCAGCCTCTGGATTCACCTTC	0.582													13	98					0	0	0.018920	0	0
ABCC11	85320	broad.mit.edu	37	16	48249135	48249135	+	Missense_Mutation	SNP	C	T	T	rs150392452		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:48249135C>T	uc002eff.1	-	7	1422	c.1072G>A	c.(1072-1074)GAG>AAG	p.E358K	ABCC11_uc002efg.1_Missense_Mutation_p.E358K|ABCC11_uc002efh.1_Missense_Mutation_p.E358K|ABCC11_uc010vgk.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	358	ABC transmembrane type-1 1.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				AATGGTTTCTCCCATGTGTAC	0.478									Cerumen_Type				11	43					0	0	0.010729	0	0
SALL1	6299	broad.mit.edu	37	16	51175386	51175386	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:51175386C>T	uc010vgs.1	-	2	778	c.747G>A	c.(745-747)CAG>CAA	p.Q249Q	SALL1_uc010vgr.1_Silent_p.Q152Q|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	249					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GGTGACGAATCTGTTCGATCA	0.537													32	67					0	0	0.013726	0	0
GPR97	222487	broad.mit.edu	37	16	57718363	57718364	+	Missense_Mutation	DNP	CC	TT	TT	rs111888711	byFrequency	TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:57718363_57718364CC>TT	uc002emh.2	+	10	1327_1328	c.1224_1225CC>TT	c.(1222-1227)ATCCGT>ATTTGT	p.R409C	GPR97_uc010vhv.1_Missense_Mutation_p.R289C|GPR97_uc010cdd.2_RNA|GPR97_uc010cde.2_Missense_Mutation_p.R17C	NM_170776	NP_740746	Q86Y34	GPR97_HUMAN	G protein-coupled receptor 97 precursor	409	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1						TCTACACCATCCGTGATAGGGA	0.629													11	36					0	0	0.004672	0	0
C16orf70	80262	broad.mit.edu	37	16	67168101	67168101	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:67168101C>T	uc002erc.2	+	8	565	c.481C>T	c.(481-483)CAG>TAG	p.Q161*	C16orf70_uc002erd.2_Nonsense_Mutation_p.Q161*|C16orf70_uc002ere.1_Nonsense_Mutation_p.Q236*	NM_025187	NP_079463	Q9BSU1	CP070_HUMAN	lin-10	161										ovary(2)	2		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0017)|Epithelial(162;0.00655)|all cancers(182;0.0579)		GGCTTCTCTCCAGATACCCCA	0.483													28	72					0	0	0.008361	0	0
FBXL8	55336	broad.mit.edu	37	16	67197714	67197714	+	Silent	SNP	C	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:67197714C>A	uc002erj.1	+	3	1236	c.1116C>A	c.(1114-1116)CTC>CTA	p.L372L	FBXL8_uc002erk.1_Silent_p.L372L|HSF4_uc002erl.1_5'UTR|HSF4_uc002erm.1_5'UTR|HSF4_uc002ern.1_5'Flank|HSF4_uc010cec.1_5'Flank	NM_018378	NP_060848	Q96CD0	FBXL8_HUMAN	F-box and leucine-rich repeat protein 8	372							protein binding				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0144)|Epithelial(162;0.0338)|all cancers(182;0.185)		GGCCTACGCTCGTGGCGTGAT	0.697													11	35					3.27435e-08	3.38726e-08	0.020292	1	0
EXOC3L	283849	broad.mit.edu	37	16	67221645	67221645	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:67221645C>T	uc002erx.1	-	5	764	c.523G>A	c.(523-525)GAT>AAT	p.D175N	EXOC3L_uc002erv.1_RNA|EXOC3L_uc002erw.1_Intron|EXOC3L_uc002ery.1_Missense_Mutation_p.D119N|EXOC3L_uc010vje.1_Missense_Mutation_p.D114N	NM_178516	NP_848611	Q86VI1	EX3L1_HUMAN	exocyst complex component 3-like	175	Mediates interaction with EXOC2, EXOC4 and EXOC5 (By similarity).				exocytosis|peptide hormone secretion	exocyst|stored secretory granule|transport vesicle					0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0021)|Epithelial(162;0.0073)|all cancers(182;0.0616)		GCCCACGTATCCTCTCGCAGC	0.617													12	60					0	0	0.013537	0	0
TPPP3	51673	broad.mit.edu	37	16	67424844	67424844	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:67424844G>A	uc002esz.2	-	1	1006	c.171C>T	c.(169-171)ATC>ATT	p.I57I	TPPP3_uc002eta.2_Silent_p.I57I|TPPP3_uc002etb.2_Silent_p.I57I	NM_016140	NP_057224	Q9BW30	TPPP3_HUMAN	tubulin polymerization-promoting protein family	57					microtubule bundle formation	cytoplasm|microtubule	calcium ion binding|tubulin binding			central_nervous_system(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0336)|Epithelial(162;0.0781)		TGGAGAAGACGATGTCCACAT	0.577													10	26					0	0	0.010729	0	0
NUTF2	10204	broad.mit.edu	37	16	67904742	67904742	+	Silent	SNP	C	T	T	rs34777458	byFrequency	TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:67904742C>T	uc002eup.2	+	5	409	c.310C>T	c.(310-312)CTA>TTA	p.L104L	NUTF2_uc002euq.3_RNA|EDC4_uc002eur.2_5'Flank|EDC4_uc010cer.2_5'Flank|EDC4_uc010vkg.1_5'Flank	NM_005796	NP_005787	P61970	NTF2_HUMAN	nuclear transport factor 2	104	NTF2.				protein transport	cytosol|nuclear pore	protein binding|transporter activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00443)|Epithelial(162;0.0199)|all cancers(182;0.129)		CCAGATGTTCCTATTAAAGAA	0.498													22	113					0	0	0.004656	0	0
PSKH1	5681	broad.mit.edu	37	16	67943579	67943579	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:67943579C>T	uc002euv.2	+	2	1097	c.927C>T	c.(925-927)ATC>ATT	p.I309I	PSKH1_uc010cet.2_Silent_p.I309I	NM_006742	NP_006733	P11801	KPSH1_HUMAN	protein serine kinase H1	309	Protein kinase.					endoplasmic reticulum membrane|Golgi apparatus|microtubule organizing center|nuclear speck|plasma membrane	ATP binding|protein serine/threonine kinase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0044)|Epithelial(162;0.0197)|all cancers(182;0.128)		ACCGGCAGATCCTCAGGGGCA	0.597													5	17					0	0	0.014758	0	0
SMPD3	55512	broad.mit.edu	37	16	68404909	68404909	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:68404909G>A	uc002ewa.2	-	3	1598	c.1176C>T	c.(1174-1176)TAC>TAT	p.Y392Y	SMPD3_uc010cfe.2_Silent_p.Y392Y|SMPD3_uc010vlh.1_Silent_p.Y392Y	NM_018667	NP_061137	Q9NY59	NSMA2_HUMAN	neutral sphingomyelin phosphodiesterase 3	392	Lumenal (Potential).				cell cycle|multicellular organismal development|sphingomyelin catabolic process	Golgi membrane|integral to membrane|plasma membrane	metal ion binding|sphingomyelin phosphodiesterase activity			skin(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0184)|Epithelial(162;0.0785)	Phosphatidylserine(DB00144)	CCTGGCAGCCGTAGACCCCGA	0.577													6	33					0	0	0.001984	0	0
SMPD3	55512	broad.mit.edu	37	16	68405628	68405628	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:68405628C>T	uc002ewa.2	-	3	879	c.457G>A	c.(457-459)GAG>AAG	p.E153K	SMPD3_uc010cfe.2_Missense_Mutation_p.E153K|SMPD3_uc010vlh.1_Missense_Mutation_p.E153K	NM_018667	NP_061137	Q9NY59	NSMA2_HUMAN	neutral sphingomyelin phosphodiesterase 3	153	Lumenal (Potential).				cell cycle|multicellular organismal development|sphingomyelin catabolic process	Golgi membrane|integral to membrane|plasma membrane	metal ion binding|sphingomyelin phosphodiesterase activity			skin(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0184)|Epithelial(162;0.0785)	Phosphatidylserine(DB00144)	TGCCCGATCTCCTTGGCCCGC	0.592													8	31					0	0	0.006214	0	0
ZFP90	146198	broad.mit.edu	37	16	68598164	68598164	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:68598164C>T	uc010cff.2	+	5	1766	c.1474C>T	c.(1474-1476)CCT>TCT	p.P492S	ZFP90_uc002ewb.2_3'UTR|ZFP90_uc002ewc.2_3'UTR|ZFP90_uc002ewd.2_Missense_Mutation_p.P492S|ZFP90_uc002ewe.2_Missense_Mutation_p.P492S	NM_133458	NP_597715	Q8TF47	ZFP90_HUMAN	zinc finger protein 90	492					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00233)|Epithelial(162;0.0184)|all cancers(182;0.0946)		TATTTCTCATCCTGGAGAGAA	0.408													14	28					0	0	0.020292	0	0
TMCO7	79613	broad.mit.edu	37	16	68901015	68901015	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:68901015C>T	uc002ewi.3	+	4	898	c.886C>T	c.(886-888)CGG>TGG	p.R296W	TMCO7_uc002ewh.2_Missense_Mutation_p.R296W	NM_024562	NP_078838	Q9C0B7	TMCO7_HUMAN	transmembrane and coiled-coil domains 7	296						integral to membrane	binding				0		Ovarian(137;0.0568)		OV - Ovarian serous cystadenocarcinoma(108;0.0446)|Epithelial(162;0.198)		GATGAGGTGTCGGGCCCCAGC	0.502													40	87					0	0	0.007835	0	0
HYDIN	54768	broad.mit.edu	37	16	70852320	70852320	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:70852320C>T	uc002ezr.2	-	84	14708	c.14580G>A	c.(14578-14580)TCG>TCA	p.S4860S	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4861										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AGAAGGTCACCGAGTAGGGCA	0.617													7	17					0	0	0.008291	0	0
HYDIN	54768	broad.mit.edu	37	16	70867977	70867977	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:70867977G>A	uc002ezr.2	-	79	13617	c.13489C>T	c.(13489-13491)CCT>TCT	p.P4497S	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4498										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GAGAAGGGAGGGACACGCTTC	0.557													6	32					0	0	0.001984	0	0
HYDIN	54768	broad.mit.edu	37	16	70934932	70934932	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:70934932T>C	uc002ezr.2	-	53	9148	c.9020A>G	c.(9019-9021)AAC>AGC	p.N3007S		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3008										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CTTCTTGATGTTGACAGGCTT	0.438													24	145					0	0	0.007835	0	0
HYDIN	54768	broad.mit.edu	37	16	70995865	70995865	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:70995865G>A	uc002ezr.2	-	38	6090	c.5962C>T	c.(5962-5964)CAA>TAA	p.Q1988*		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1989										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CGGTTACTTTGGAAAATGATT	0.433													11	37					0	0	0.003163	0	0
HYDIN	54768	broad.mit.edu	37	16	71220731	71220731	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:71220731C>T	uc002ezr.2	-	2	196	c.68G>A	c.(67-69)GGA>GAA	p.G23E	HYDIN_uc010cfz.1_5'UTR|HYDIN_uc002ezv.2_Missense_Mutation_p.G23E|HYDIN_uc010vmc.1_Missense_Mutation_p.G40E|HYDIN_uc010vmd.1_Missense_Mutation_p.G50E|HYDIN_uc002ezw.3_Missense_Mutation_p.G40E	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	23										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GCTTTGAAATCCTTTGAACAT	0.383													7	23					0	0	0.001984	0	0
TAT	6898	broad.mit.edu	37	16	71606462	71606462	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:71606462C>T	uc002fap.2	-	5	637	c.538G>A	c.(538-540)GGA>AGA	p.G180R		NM_000353	NP_000344	P17735	ATTY_HUMAN	tyrosine aminotransferase	180					2-oxoglutarate metabolic process|glutamate metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-tyrosine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(2)	2		Ovarian(137;0.125)		Kidney(780;0.0157)	L-Glutamic Acid(DB00142)|L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Pyridoxal Phosphate(DB00114)	ACCTCAATTCCCATAGACTCA	0.388													13	44					0	0	0.004007	0	0
ZNF821	55565	broad.mit.edu	37	16	71894513	71894513	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:71894513G>A	uc010vmj.1	-	7	1023	c.647C>T	c.(646-648)TCC>TTC	p.S216F	ATXN1L_uc010vmi.1_Intron|ZNF821_uc002fbe.2_Missense_Mutation_p.S66F|ZNF821_uc002fbf.2_Missense_Mutation_p.S174F|ZNF821_uc002fbg.3_Missense_Mutation_p.S66F|ZNF821_uc002fbh.3_Missense_Mutation_p.S174F|ZNF821_uc002fbi.3_Missense_Mutation_p.S13F	NM_017530	NP_060000	O75541	ZN821_HUMAN	zinc finger protein 821	216					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CTCAGCACTGGAGGGACCCTC	0.473													30	57					0	0	0.009535	0	0
PMFBP1	83449	broad.mit.edu	37	16	72170436	72170436	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:72170436C>T	uc002fcc.3	-	9	1286	c.1114G>A	c.(1114-1116)GAT>AAT	p.D372N	PMFBP1_uc002fcd.2_Missense_Mutation_p.D372N|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Missense_Mutation_p.D227N	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	372	Potential.									ovary(2)	2		Ovarian(137;0.179)				ATGTCCTTATCCTTCCTCTCA	0.552													19	82					0	0	0.008871	0	0
ZFHX3	463	broad.mit.edu	37	16	72993158	72993158	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:72993158G>A	uc002fck.2	-	2	1560	c.887C>T	c.(886-888)TCG>TTG	p.S296L	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	296	C2H2-type 1.				muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				GGTCACAAACGAACGGACGTA	0.493													19	60					0	0	0.007413	0	0
KARS	3735	broad.mit.edu	37	16	75681539	75681539	+	Translation_Start_Site	SNP	T	A	A	rs138776538		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:75681539T>A	uc002feq.2	-	1	47	c.-1A>T	c.(-3-1)GAAGA>GATGA		KARS_uc002fer.2_Translation_Start_Site|KARS_uc002fes.2_Translation_Start_Site|KARS_uc010cha.1_Intron|TERF2IP_uc002fet.1_5'Flank	NM_005548	NP_005539	Q15046	SYK_HUMAN	lysyl-tRNA synthetase isoform 2						interspecies interaction between organisms|lysyl-tRNA aminoacylation|tRNA processing	cytosol|extracellular region|mitochondrial matrix|nucleus|plasma membrane|soluble fraction	ATP binding|lysine-tRNA ligase activity|metal ion binding|tRNA binding			ovary(2)	2					L-Lysine(DB00123)	GGCCGCCATCTTCCCGGAGGG	0.597													6	17					0	0	0.004482	0	0
HSD17B2	3294	broad.mit.edu	37	16	82104609	82104609	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr16:82104609C>T	uc002fgv.2	+	3	713	c.541C>T	c.(541-543)CTT>TTT	p.L181F		NM_002153	NP_002144	P37059	DHB2_HUMAN	hydroxysteroid (17-beta) dehydrogenase 2	181					response to retinoic acid|steroid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	17-alpha,20-alpha-dihydroxypregn-4-en-3-one dehydrogenase activity|binding|estradiol 17-beta-dehydrogenase activity|testosterone 17-beta-dehydrogenase (NAD+) activity			ovary(1)|central_nervous_system(1)	2					NADH(DB00157)	GGAGCTTCTTCTTATGACTGA	0.468													13	48					0	0	0.003163	0	0
NLRP1	22861	broad.mit.edu	37	17	5462774	5462774	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:5462774C>T	uc002gci.2	-	4	1797	c.1242G>A	c.(1240-1242)GAG>GAA	p.E414E	NLRP1_uc002gcg.1_Silent_p.E414E|NLRP1_uc002gck.2_Silent_p.E414E|NLRP1_uc002gcj.2_Silent_p.E414E|NLRP1_uc002gcl.2_Silent_p.E414E|NLRP1_uc002gch.3_Silent_p.E414E|NLRP1_uc010clh.2_Silent_p.E414E	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	414	NACHT.				defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				CCCATCCTGGCTCATCTACAC	0.582													17	23					0	0	0.004990	0	0
EIF5A	1984	broad.mit.edu	37	17	7212975	7212975	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:7212975C>T	uc010vtv.1	+	2	258	c.21C>T	c.(19-21)TTC>TTT	p.F7F	EIF5A_uc002gfr.2_Silent_p.F37F|EIF5A_uc010vtu.1_5'UTR|EIF5A_uc002gft.2_Silent_p.F7F|EIF5A_uc002gfu.2_Silent_p.F7F	NM_001970	NP_001961	P63241	IF5A1_HUMAN	eukaryotic translation initiation factor 5A	7					induction of apoptosis|mRNA export from nucleus|peptidyl-lysine modification to hypusine|positive regulation of cell proliferation|positive regulation of translational elongation|positive regulation of translational termination|post-translational protein modification|protein export from nucleus|translational frameshifting|transmembrane transport	annulate lamellae|cytosol|endoplasmic reticulum membrane|nuclear pore	protein N-terminus binding|ribosome binding|translation elongation factor activity|U6 snRNA binding				0						ACTTGGACTTCGAGACAGGAG	0.498													35	90					0	0	0.017118	0	0
SHBG	6462	broad.mit.edu	37	17	7536267	7536267	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:7536267G>A	uc002gie.2	+	7	1088	c.1050G>A	c.(1048-1050)GGG>GGA	p.G350G	SHBG_uc010cmo.2_Silent_p.G238G|SHBG_uc010cmp.2_Intron|SHBG_uc010cmq.2_Intron|SHBG_uc010cmr.2_Intron|SHBG_uc010cms.2_Intron|SHBG_uc010cmt.2_Silent_p.G292G|SHBG_uc010cmu.2_Intron|SHBG_uc010cmz.2_Intron|SHBG_uc010cmv.2_Intron|SHBG_uc010cmw.2_Intron|SHBG_uc010cmx.2_Intron|SHBG_uc010cmy.2_Silent_p.G292G|SHBG_uc002gid.3_Intron|SHBG_uc010cnd.2_Intron|SHBG_uc010cna.2_Intron|SHBG_uc010vue.1_Silent_p.G332G|SHBG_uc010vuf.1_Intron|SHBG_uc010cnb.2_Intron|SHBG_uc010cnc.2_Intron	NM_001040	NP_001031	P04278	SHBG_HUMAN	sex hormone-binding globulin isoform 1	350	Laminin G-like 2.				hormone transport	extracellular region	androgen binding|protein homodimerization activity	p.0?(1)|p.?(1)			0		all_cancers(10;0.0867)		READ - Rectum adenocarcinoma(115;0.168)	Danazol(DB01406)|Dromostanolone(DB00858)|Estradiol(DB00783)|Estrone(DB00655)|Fluoxymesterone(DB01185)|Hydrocortisone(DB00741)|Mitotane(DB00648)|Norethindrone(DB00717)|Testosterone(DB00624)	TCTTCCTGGGGGCTTTACCAG	0.557											OREG0024140	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	15					0	0	0.010729	0	0
ARHGEF15	22899	broad.mit.edu	37	17	8218516	8218516	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:8218516C>T	uc002glc.2	+	6	1302	c.1181C>T	c.(1180-1182)ACC>ATC	p.T394I	ARHGEF15_uc002gld.2_Missense_Mutation_p.T394I|ARHGEF15_uc010vuw.1_Missense_Mutation_p.T283I	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15	394					negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						CCTCGCAACACCCTGTGGCAG	0.642													3	17					0	0	0.004672	0	0
MYH4	4622	broad.mit.edu	37	17	10348312	10348312	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:10348312A>C	uc002gmn.2	-	37	5558	c.5447T>G	c.(5446-5448)ATC>AGC	p.I1816S	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1816	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CAGTTTCTGGATCTGCTTCTT	0.542													32	85					0	0	0.015359	0	0
MYH2	4620	broad.mit.edu	37	17	10448786	10448786	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:10448786G>A	uc010coi.2	-	5	510	c.382C>T	c.(382-384)CCC>TCC	p.P128S	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.P128S|MYH2_uc010coj.2_Missense_Mutation_p.P128S	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	128	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CACTTGTAGGGGTTGACAGTG	0.468													12	49					0	0	0.010729	0	0
ELAC2	60528	broad.mit.edu	37	17	12898087	12898087	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:12898087G>A	uc002gnz.3	-	21	2118	c.2023C>T	c.(2023-2025)CGG>TGG	p.R675W	ELAC2_uc002gnu.3_Missense_Mutation_p.R72W|ELAC2_uc002gnv.3_Missense_Mutation_p.R303W|ELAC2_uc002gnw.3_Missense_Mutation_p.R331W|ELAC2_uc002gnx.3_Missense_Mutation_p.R435W|ELAC2_uc010vvo.1_Missense_Mutation_p.R473W|ELAC2_uc010vvp.1_Missense_Mutation_p.R656W|ELAC2_uc010vvq.1_Missense_Mutation_p.R674W|ELAC2_uc010vvr.1_Missense_Mutation_p.R635W	NM_018127	NP_060597	Q9BQ52	RNZ2_HUMAN	elaC homolog 2 isoform 1	675					tRNA processing	nucleus	endonuclease activity|metal ion binding|protein binding				0						TCACCCATCCGGACCAGAGCC	0.602									Hereditary_Prostate_Cancer				5	15					0	0	0.001984	0	0
PIGL	9487	broad.mit.edu	37	17	16120544	16120544	+	Missense_Mutation	SNP	G	A	A	rs150000731		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:16120544G>A	uc002gpv.2	+	1	36	c.4G>A	c.(4-6)GAA>AAA	p.E2K	NCOR1_uc002gpo.2_5'Flank|PIGL_uc010vwd.1_Missense_Mutation_p.E2K|NCOR1_uc002gps.1_5'Flank|NCOR1_uc010coz.1_5'Flank|NCOR1_uc010cpb.1_5'Flank|NCOR1_uc010cpa.1_5'Flank|NCOR1_uc002gpu.2_5'Flank	NM_004278	NP_004269	Q9Y2B2	PIGL_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	2	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	N-acetylglucosaminylphosphatidylinositol deacetylase activity				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0934)		ACCCATCATGGAAGCAATGTG	0.587													17	25					0	0	0.004990	0	0
LLGL1	3996	broad.mit.edu	37	17	18137373	18137373	+	Missense_Mutation	SNP	T	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:18137373T>G	uc002gsp.2	+	6	659	c.598T>G	c.(598-600)TCA>GCA	p.S200A		NM_004140	NP_004131	Q15334	L2GL1_HUMAN	lethal giant larvae homolog 1	200	WD 4.				cortical actin cytoskeleton organization|exocytosis|protein complex assembly	cortical actin cytoskeleton	protein kinase binding|structural molecule activity			breast(2)|skin(2)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)	6	all_neural(463;0.228)					CCCCGTGGAGTCACTCCAGGG	0.632													9	9					0	0	0.004482	0	0
SLC47A1	55244	broad.mit.edu	37	17	19458545	19458545	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:19458545C>T	uc002gvy.1	+	7	650	c.564C>T	c.(562-564)ATC>ATT	p.I188I	SLC47A1_uc010vyy.1_Intron|SLC47A1_uc002gvx.2_Silent_p.I188I|SLC47A1_uc010vyz.1_Silent_p.I165I|SLC47A1_uc010cqp.1_Intron|SLC47A1_uc010cqq.1_Intron|SLC47A1_uc010vza.1_5'Flank|SLC47A1_uc010vzb.1_5'Flank|SLC47A1_uc010vzc.1_5'Flank|SNORA59B_uc002gvz.1_5'Flank	NM_018242	NP_060712	Q96FL8	S47A1_HUMAN	solute carrier family 47, member 1	188	Helical; (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.49e-05)|all_epithelial(12;0.00263)|Hepatocellular(7;0.00345)					TGCCCCAGATCGTAACTGGAG	0.507													53	101					0	0	0.014410	0	0
TAOK1	57551	broad.mit.edu	37	17	27869900	27869900	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:27869900C>T	uc002hdz.1	+	20	3060	c.2866C>T	c.(2866-2868)CGA>TGA	p.R956*	TAOK1_uc010wbe.1_Nonsense_Mutation_p.R808*|TAOK1_uc010wbf.1_Nonsense_Mutation_p.R956*	NM_020791	NP_065842	Q7L7X3	TAOK1_HUMAN	TAO kinase 1	956					mitotic prometaphase	cytosol|intracellular membrane-bounded organelle	ATP binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)|skin(1)	4			Colorectal(6;0.198)			AGGGGTACCTCGAGGTAGCAG	0.632													19	23					0	0	0.007413	0	0
TMIGD1	388364	broad.mit.edu	37	17	28652031	28652031	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:28652031T>C	uc002hfa.1	-	4	516	c.443A>G	c.(442-444)AAC>AGC	p.N148S	TMIGD1_uc010csh.1_Missense_Mutation_p.N148S	NM_206832	NP_996663	Q6UXZ0	TMIG1_HUMAN	transmembrane and immunoglobulin domain	148	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane					0						AGCCTGGGGGTTGGCTTTCAC	0.443													66	89					0	0	0.014410	0	0
MYO1D	4642	broad.mit.edu	37	17	31098192	31098192	+	Missense_Mutation	SNP	T	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:31098192T>G	uc002hho.1	-	6	677	c.665A>C	c.(664-666)CAG>CCG	p.Q222P	MYO1D_uc002hhp.1_Missense_Mutation_p.Q222P|MYO1D_uc010wcb.1_Missense_Mutation_p.Q222P	NM_015194	NP_056009	O94832	MYO1D_HUMAN	myosin ID	222	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3			BRCA - Breast invasive adenocarcinoma(9;0.0362)			AAGGGATTTCTGGAGATGTAG	0.358													17	73					0	0	0.014323	0	0
LIG3	3980	broad.mit.edu	37	17	33316651	33316651	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:33316651C>T	uc002hik.1	+	4	966	c.858C>T	c.(856-858)ATC>ATT	p.I286I	LIG3_uc002hii.2_Silent_p.I286I|LIG3_uc002hij.2_Silent_p.I286I|LIG3_uc010cth.1_Silent_p.I295I	NM_013975	NP_039269	P49916	DNLI3_HUMAN	ligase III, DNA, ATP-dependent isoform alpha	286					base-excision repair|cell division|DNA ligation involved in DNA repair|DNA replication|reciprocal meiotic recombination|spermatogenesis	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|protein binding|zinc ion binding			skin(3)|lung(2)|ovary(2)|large_intestine(1)|pancreas(1)	9		Ovarian(249;0.17)			Bleomycin(DB00290)	CCCAGATCATCCAGGACTTCC	0.483								Other_BER_factors					23	105					0	0	0.016522	0	0
AATF	26574	broad.mit.edu	37	17	35376338	35376339	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:35376338_35376339CC>TT	uc002hni.2	+	9	1684_1685	c.1433_1434CC>TT	c.(1432-1434)TCC>TTT	p.S478F	AATF_uc002hnj.2_RNA	NM_012138	NP_036270	Q9NY61	AATF_HUMAN	apoptosis antagonizing transcription factor	478					anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|negative regulation of superoxide anion generation|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to DNA damage stimulus	centrosome|focal adhesion|nucleolus	leucine zipper domain binding|sequence-specific DNA binding transcription factor activity				0		Breast(25;0.00607)				AAGACCAGCTCCTTGGATCCCA	0.436													34	52					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	17	37188577	37188577	+	RNA	SNP	T	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:37188577T>G	uc002hrd.1	+	1		c.2419T>G								Homo sapiens cDNA FLJ43826 fis, clone TESTI4002703.																		ACATATGTGATCTCTGTACCT	0.517													5	229					0	0	0.001984	0	0
GRB7	2886	broad.mit.edu	37	17	37901727	37901727	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:37901727G>A	uc002hsr.2	+	11	1395	c.1145G>A	c.(1144-1146)GGG>GAG	p.G382E	GRB7_uc002hss.2_Missense_Mutation_p.G382E|GRB7_uc010cwc.2_Missense_Mutation_p.G382E|GRB7_uc002hst.2_Missense_Mutation_p.G382E	NM_005310	NP_005301	Q14451	GRB7_HUMAN	growth factor receptor-bound protein 7	382					blood coagulation|epidermal growth factor receptor signaling pathway|leukocyte migration|negative regulation of translation|positive regulation of cell migration|stress granule assembly	cytosol|focal adhesion|stress granule	phosphatidylinositol binding|protein kinase binding|SH3/SH2 adaptor activity			lung(2)|ovary(1)|breast(1)|skin(1)	5	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;6.86e-60)|all cancers(3;1.65e-53)|BRCA - Breast invasive adenocarcinoma(8;2.03e-43)|STAD - Stomach adenocarcinoma(3;1.43e-12)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			GGCCATGCTGGGCGTGTCATT	0.612													16	59					0	0	0.004990	0	0
ZPBP2	124626	broad.mit.edu	37	17	38027043	38027043	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:38027043G>A	uc002hte.2	+	3	368	c.215G>A	c.(214-216)TGG>TAG	p.W72*	ZPBP2_uc002htf.2_Nonsense_Mutation_p.W50*	NM_199321	NP_955353	Q6X784	ZPBP2_HUMAN	zona pellucida binding protein 2 isoform 2	72					binding of sperm to zona pellucida	extracellular region				ovary(1)	1	Colorectal(19;0.000442)		Lung(15;0.00849)|LUSC - Lung squamous cell carcinoma(15;0.171)			ACCTACTTATGGATTGGGCCT	0.294													34	55					0	0	0.007835	0	0
KRTAP4-5	85289	broad.mit.edu	37	17	39305976	39305976	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:39305976C>T	uc002hwb.2	-	1	79	c.44G>A	c.(43-45)TGT>TAT	p.C15Y		NM_033188	NP_149445	Q9BYR2	KRA45_HUMAN	keratin associated protein 4-5	15	27 X 5 AA repeats of C-C-[GRQVCHIEK]- [SPTR]-[VSTQYC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			CTCCAGGCCACAGCTCTGCTC	0.602													16	42					0	0	0.007413	0	0
KRT32	3882	broad.mit.edu	37	17	39622158	39622158	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:39622158C>T	uc002hwr.2	-	3	636	c.575G>A	c.(574-576)CGG>CAG	p.R192Q		NM_002278	NP_002269	Q14532	K1H2_HUMAN	keratin 32	192	Rod.|Coil 1B.				epidermis development	intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000812)				CACCAGCTGCCGCATGGCCAG	0.587													28	79					0	0	0.007291	0	0
KCNH4	23415	broad.mit.edu	37	17	40328259	40328260	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:40328259_40328260CC>AT	uc002hzb.2	-	5	974_975	c.641_642GG>AT	c.(640-642)GGG>GAT	p.G214D		NM_012285	NP_036417	Q9UQ05	KCNH4_HUMAN	potassium voltage-gated channel, subfamily H,	214	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	two-component sensor activity|voltage-gated potassium channel activity			large_intestine(1)	1		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		GGCAGCGAGACCCCCCCACGGA	0.609													30	153					0	0	0.004672	0	0
FAM134C	162427	broad.mit.edu	37	17	40734029	40734029	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:40734029G>A	uc002ial.2	-	9	1306	c.1203C>T	c.(1201-1203)GTC>GTT	p.V401V	FAM134C_uc010wgq.1_Silent_p.V201V|FAM134C_uc002iam.1_Silent_p.V201V|FAM134C_uc010cyk.1_Silent_p.V304V	NM_178126	NP_835227	Q86VR2	F134C_HUMAN	hypothetical protein LOC162427	401						integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.134)		TACCCTGGGAGACCAGGCTGG	0.652													39	52					0	0	0.006230	0	0
FAM134C	162427	broad.mit.edu	37	17	40734258	40734258	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:40734258G>A	uc002ial.2	-	9	1077	c.974C>T	c.(973-975)TCC>TTC	p.S325F	FAM134C_uc010wgq.1_Missense_Mutation_p.S125F|FAM134C_uc002iam.1_Missense_Mutation_p.S125F|FAM134C_uc010cyk.1_Missense_Mutation_p.S228F	NM_178126	NP_835227	Q86VR2	F134C_HUMAN	hypothetical protein LOC162427	325						integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.134)		TCTGGCAAAGGATTCCTCTGG	0.537													14	90					0	0	0.003163	0	0
DBF4B	80174	broad.mit.edu	37	17	42828202	42828202	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:42828202C>T	uc002ihf.2	+	14	1642	c.1429C>T	c.(1429-1431)CCC>TCC	p.P477S	DBF4B_uc010wjc.1_Intron	NM_145663	NP_663696	Q8NFT6	DBF4B_HUMAN	DBF4 homolog B isoform 1	477					cell cycle	nucleus	nucleic acid binding|zinc ion binding				0		Prostate(33;0.0322)				GCCCCTCCATCCCTCCCAAGA	0.607													41	69					0	0	0.010771	0	0
DCAKD	79877	broad.mit.edu	37	17	43111675	43111675	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:43111675G>A	uc002ihx.2	-	2	452	c.196C>T	c.(196-198)CGC>TGC	p.R66C	DCAKD_uc010daa.1_Missense_Mutation_p.R66C|DCAKD_uc010dab.1_Missense_Mutation_p.R66C|DCAKD_uc002ihy.2_Missense_Mutation_p.R66C	NM_024819	NP_079095	Q8WVC6	DCAKD_HUMAN	dephospho-CoA kinase domain containing	66	DPCK.				coenzyme A biosynthetic process		ATP binding|dephospho-CoA kinase activity				0		Prostate(33;0.155)				AGGACCTTGCGATTTATGTCG	0.597													14	68					0	0	0.020292	0	0
COL1A1	1277	broad.mit.edu	37	17	48266550	48266550	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:48266550G>A	uc002iqm.2	-	40	3042	c.2916C>T	c.(2914-2916)TTC>TTT	p.F972F		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	972	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	GAAGACCAGGGAAGCCTCTCT	0.617			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						18	25					0	0	0.006122	0	0
CHAD	1101	broad.mit.edu	37	17	48545403	48545403	+	Nonsense_Mutation	SNP	T	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:48545403T>A	uc010dbr.2	-	1	825	c.772A>T	c.(772-774)AAG>TAG	p.K258*	ACSF2_uc002iqu.2_Intron|ACSF2_uc010wml.1_Intron|ACSF2_uc010wmm.1_Intron|ACSF2_uc010wmn.1_Intron|ACSF2_uc010wmo.1_Intron|CHAD_uc010dbs.2_Nonsense_Mutation_p.K258*|ACSF2_uc010dbt.1_5'Flank	NM_001267	NP_001258	O15335	CHAD_HUMAN	chondroadherin precursor	258	LRR 8.				regulation of cell growth	proteinaceous extracellular matrix	extracellular matrix structural constituent			ovary(2)|central_nervous_system(1)	3	Breast(11;1.93e-18)		BRCA - Breast invasive adenocarcinoma(22;1.55e-09)			GAGCTCACCTTCTCCAGGTTG	0.622													43	42					0	0	0.009718	0	0
WFIKKN2	124857	broad.mit.edu	37	17	48918327	48918327	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:48918327G>A	uc002isv.3	+	2	2372	c.1678G>A	c.(1678-1680)GTC>ATC	p.V560I	WFIKKN2_uc010dbu.2_Missense_Mutation_p.V467I	NM_175575	NP_783165	Q8TEU8	WFKN2_HUMAN	WFIKKN2 protein	560	NTR.					extracellular region	metalloendopeptidase inhibitor activity|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			GCTTCGTGAGGTCATGCACAA	0.627													37	56					0	0	0.013114	0	0
KIF2B	84643	broad.mit.edu	37	17	51900694	51900695	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:51900694_51900695GG>AA	uc002iua.2	+	1	456_457	c.300_301GG>AA	c.(298-303)CTGGCG>CTAACG	p.A101T	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	101					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						CCTTGGCTCTGGCGCCCTCTTC	0.594													83	131					0	0	0.004672	0	0
EFCAB3	146779	broad.mit.edu	37	17	60484436	60484436	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:60484436C>T	uc002izu.1	+	8	808	c.730C>T	c.(730-732)CCA>TCA	p.P244S	EFCAB3_uc010wpc.1_Missense_Mutation_p.P296S	NM_173503	NP_775774	Q8N7B9	EFCB3_HUMAN	EF-hand calcium binding domain 3 isoform b	244							calcium ion binding			skin(1)	1			BRCA - Breast invasive adenocarcinoma(2;2.27e-11)			ACCCATCTTTCCATTGTTCCC	0.368													38	33					0	0	0.010771	0	0
KCNH6	81033	broad.mit.edu	37	17	61623198	61623198	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:61623198C>T	uc002jay.2	+	14	3000	c.2920C>T	c.(2920-2922)CCC>TCC	p.P974S	KCNH6_uc010wpl.1_Missense_Mutation_p.P815S|KCNH6_uc010wpm.1_Missense_Mutation_p.P938S|KCNH6_uc002jaz.1_Missense_Mutation_p.P885S	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	974	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	TGGCTCTGTTCCCAAGCAGCT	0.562													25	129					0	0	0.006320	0	0
LRRC37A3	374819	broad.mit.edu	37	17	62856333	62856333	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:62856333G>A	uc002jey.2	-	11	4462	c.3931C>T	c.(3931-3933)CGC>TGC	p.R1311C	LRRC37A3_uc010wqg.1_Missense_Mutation_p.R429C|LRRC37A3_uc002jex.1_Missense_Mutation_p.R288C|LRRC37A3_uc010wqf.1_Missense_Mutation_p.R349C|LRRC37A3_uc010dek.1_Missense_Mutation_p.R317C	NM_199340	NP_955372	O60309	L37A3_HUMAN	leucine rich repeat containing 37, member A3	1311	Extracellular (Potential).					integral to membrane					0						ATGCGGGAGCGAGTTTTGTGA	0.413													230	151					0	0	0.014410	0	0
FAM20A	54757	broad.mit.edu	37	17	66538260	66538260	+	Silent	SNP	C	T	T	rs150508189	byFrequency	TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:66538260C>T	uc002jho.2	-	7	1263	c.975G>A	c.(973-975)ACG>ACA	p.T325T	FAM20A_uc010wqp.1_Silent_p.T187T|PRKAR1A_uc002jhm.2_Intron|FAM20A_uc002jhn.2_Missense_Mutation_p.R28Q	NM_017565	NP_060035	Q96MK3	FA20A_HUMAN	family with sequence similarity 20, member A	325						extracellular region					0	Breast(10;1.64e-13)					CAGCATACTCCGTCTTGCACA	0.607													30	35					0	0	0.009535	0	0
ABCA8	10351	broad.mit.edu	37	17	66873793	66873793	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:66873793C>T	uc002jhp.2	-	31	4125	c.3946G>A	c.(3946-3948)GAT>AAT	p.D1316N	ABCA8_uc002jhq.2_Missense_Mutation_p.D1356N|ABCA8_uc010wqq.1_Missense_Mutation_p.D1351N	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	1316	ABC transporter 2.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					TCCAGGGCATCCCCTCCACCG	0.567													61	80					0	0	0.014410	0	0
ABCA10	10349	broad.mit.edu	37	17	67197775	67197775	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:67197775G>A	uc010dfa.1	-	11	1920	c.1041C>T	c.(1039-1041)TTC>TTT	p.F347F	ABCA10_uc010wqt.1_RNA|ABCA10_uc010dfb.1_5'UTR|ABCA10_uc010dfc.1_Intron	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	347					transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					AGGACTTAAGGAAAAATAATG	0.328													35	40					0	0	0.006999	0	0
KIF19	124602	broad.mit.edu	37	17	72346585	72346585	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:72346585G>A	uc002jkm.3	+	11	1397	c.1259G>A	c.(1258-1260)GGA>GAA	p.G420E	KIF19_uc002jkj.2_Missense_Mutation_p.G420E|KIF19_uc002jkk.2_Missense_Mutation_p.G378E|KIF19_uc002jkl.2_Missense_Mutation_p.G378E	NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	420					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						GCTGGCATGGGACAGCTTCGG	0.642													4	11					0	0	0.009096	0	0
CD300LB	124599	broad.mit.edu	37	17	72522111	72522111	+	Missense_Mutation	SNP	C	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:72522111C>G	uc002jkx.2	-	2	270	c.257G>C	c.(256-258)TGG>TCG	p.W86S	CD300LB_uc010wqz.1_Missense_Mutation_p.W86S	NM_174892	NP_777552	A8K4G0	CLM7_HUMAN	CD300 molecule-like family member b	49	Ig-like V-type.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)	1						CCCTCGGCACCACCACTTAAT	0.547													4	222					0	0	0.014758	0	0
GRIN2C	2905	broad.mit.edu	37	17	72846775	72846775	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:72846775G>A	uc002jlt.1	-	5	1401	c.1245C>T	c.(1243-1245)ATC>ATT	p.I415I	GRIN2C_uc010wrh.1_RNA|GRIN2C_uc002jlu.1_Silent_p.I415I|GRIN2C_uc002jlv.1_3'UTR	NM_000835	NP_000826	Q14957	NMDE3_HUMAN	N-methyl-D-aspartate receptor subunit 2C	415	Extracellular (Potential).				glutamate signaling pathway	cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|N-methyl-D-aspartate selective glutamate receptor activity			ovary(2)|breast(2)	4	all_lung(278;0.172)|Lung NSC(278;0.207)				Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)	GGCTCTCCACGATGACAAAGG	0.652													13	88					0	0	0.016723	0	0
C17orf28	283987	broad.mit.edu	37	17	72959095	72959095	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:72959095C>T	uc002jmj.3	-	4	618	c.469G>A	c.(469-471)GAC>AAC	p.D157N	C17orf28_uc010wrs.1_5'UTR|C17orf28_uc002jmk.2_Missense_Mutation_p.D156N	NM_030630	NP_085133	Q8IV36	CQ028_HUMAN	hypothetical protein LOC283987	157						integral to membrane|plasma membrane	protein binding				0	all_lung(278;0.151)|Lung NSC(278;0.185)					ACCGTGAAGTCCGGGCAGAAG	0.677													7	62					0	0	0.001984	0	0
LLGL2	3993	broad.mit.edu	37	17	73555366	73555366	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:73555366C>T	uc002joh.2	+	6	559	c.405C>T	c.(403-405)GTC>GTT	p.V135V	LLGL2_uc002jog.1_Silent_p.V135V|LLGL2_uc010dgf.1_Silent_p.V135V|LLGL2_uc002joi.2_Silent_p.V135V|LLGL2_uc010dgg.1_Silent_p.V135V|LLGL2_uc002joj.2_Silent_p.V124V	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	135	WD 3.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			TCACCGTGGTCCTGCCACATT	0.642													6	41					0	0	0.001984	0	0
DNAH17	8632	broad.mit.edu	37	17	76425362	76425362	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:76425362C>T	uc010dhp.1	-	21	3467	c.3245G>A	c.(3244-3246)CGC>CAC	p.R1082H	DNAH17_uc002jvq.2_Missense_Mutation_p.R367H|DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			AAAAAGGTAGCGGAGATCGTC	0.592													15	66					0	0	0.006122	0	0
SIRT7	51547	broad.mit.edu	37	17	79875933	79875933	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:79875933C>T	uc002kcj.1	-	1	108	c.75G>A	c.(73-75)CAG>CAA	p.Q25Q	SIRT7_uc002kck.1_5'UTR|SIRT7_uc002kcl.1_5'UTR	NM_016538	NP_057622	Q9NRC8	SIRT7_HUMAN	sirtuin 7	25	Arg-rich.				chromatin silencing|positive regulation of transcription on exit from mitosis|protein deacetylation|rRNA transcription	cytoplasm|nucleolus organizer region	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|NAD+ binding|protein binding|zinc ion binding				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.0165)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			GGCGCTCCCTCTGCTGCTCCT	0.552													14	23					0	0	0.020292	0	0
FASN	2194	broad.mit.edu	37	17	80042511	80042511	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:80042511G>A	uc002kdu.2	-	27	4763	c.4646C>T	c.(4645-4647)TCC>TTC	p.S1549F	FASN_uc002kdv.1_5'Flank	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	1549					energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	GCGCAGCGAGGAGCAGACCCA	0.657													5	13					0	0	0.014758	0	0
C17orf101	79701	broad.mit.edu	37	17	80361871	80361871	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:80361871A>G	uc002keu.1	-	7	742	c.641T>C	c.(640-642)ATA>ACA	p.I214T	C17orf101_uc002ket.1_Missense_Mutation_p.I214T|C17orf101_uc010dip.1_RNA	NM_024648	NP_078924	Q6PK18	CQ101_HUMAN	hypothetical protein LOC79701 isoform 1	214	Fe2OG dioxygenase.|Lumenal (Potential).					integral to membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(1)	1						CGTGCTGTTTATGCGGGAGAA	0.637													19	14					0	0	0.016522	0	0
ZNF750	79755	broad.mit.edu	37	17	80789372	80789372	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:80789372C>T	uc002kga.2	-	2	1270	c.959G>A	c.(958-960)GGA>GAA	p.G320E	TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron|TBCD_uc002kfz.2_Intron	NM_024702	NP_078978	Q32MQ0	ZN750_HUMAN	zinc finger protein 750	320						intracellular	zinc ion binding			central_nervous_system(1)	1	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0514)|all_epithelial(8;0.0748)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.149)			CCTGTAAAATCCGTAAGGAAT	0.542													108	126					0	0	0.014410	0	0
B3GNTL1	146712	broad.mit.edu	37	17	80918991	80918991	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:80918991C>T	uc002kgg.1	-	8	681	c.667G>A	c.(667-669)GAC>AAC	p.D223N	B3GNTL1_uc002kgf.1_Missense_Mutation_p.D112N|B3GNTL1_uc002kge.1_RNA	NM_001009905	NP_001009905	Q67FW5	B3GNL_HUMAN	UDP-GlcNAc:betaGal	223							transferase activity, transferring glycosyl groups			ovary(1)|pancreas(1)	2	Breast(20;0.000443)|all_neural(118;0.0779)	all_cancers(8;0.0396)|all_epithelial(8;0.0556)	BRCA - Breast invasive adenocarcinoma(99;0.0517)|OV - Ovarian serous cystadenocarcinoma(97;0.0868)			AGACTCTGGTCCACGCGGATG	0.697													18	22					0	0	0.007413	0	0
ANKRD30B	374860	broad.mit.edu	37	18	14851567	14851567	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr18:14851567G>A	uc010dlo.2	+	36	3447	c.3267G>A	c.(3265-3267)AAG>AAA	p.K1089K	ANKRD30B_uc010xal.1_Silent_p.K231K	NM_001145029	NP_001138501	Q9BXX2	AN30B_HUMAN	ankyrin repeat domain 30B	1174	Potential.									ovary(1)|skin(1)	2						TGTTGAAAAAGGAAATTGCCA	0.303													3	16					0	0	0.009096	0	0
OSBPL1A	114876	broad.mit.edu	37	18	21883634	21883634	+	Missense_Mutation	SNP	G	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr18:21883634G>C	uc002kve.2	-	14	1315	c.1141C>G	c.(1141-1143)CTC>GTC	p.L381V	OSBPL1A_uc010xbc.1_5'UTR|OSBPL1A_uc002kvf.3_Missense_Mutation_p.L161V	NM_080597	NP_542164	Q9BXW6	OSBL1_HUMAN	oxysterol-binding protein-like 1A isoform B	381					cholesterol metabolic process|lipid transport|vesicle-mediated transport		phospholipid binding			ovary(4)	4	all_cancers(21;0.000396)|all_epithelial(16;4.36e-06)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0505)|Ovarian(20;0.17)					ATCATTTTGAGAAAGTTGGAA	0.333													26	98					0	0	0.013726	0	0
DSC1	1823	broad.mit.edu	37	18	28711631	28711631	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr18:28711631C>T	uc002kwn.2	-	15	2675	c.2413G>A	c.(2413-2415)GGA>AGA	p.G805R	DSC1_uc002kwm.2_Missense_Mutation_p.G805R|uc002kwo.1_RNA	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	805	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			TGCCCCACTCCCTTGACGGAC	0.507													5	30					0	0	0.014758	0	0
DSG4	147409	broad.mit.edu	37	18	28993144	28993144	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr18:28993144G>A	uc002kwq.2	+	16	2844	c.2709G>A	c.(2707-2709)GGG>GGA	p.G903G	DSG4_uc002kwr.2_Silent_p.G922G	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	903	Cytoplasmic (Potential).|Desmoglein repeat 1.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TGGTCCATGGGGATATTATTG	0.428													29	97					0	0	0.013726	0	0
DSG3	1830	broad.mit.edu	37	18	29049074	29049074	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr18:29049074C>T	uc002kws.2	+	12	1768	c.1659C>T	c.(1657-1659)GCC>GCT	p.A553A		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	553	Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TCCTCAGAGCCCAGGAACAGA	0.408													45	109					0	0	0.014410	0	0
KLHL14	57565	broad.mit.edu	37	18	30322008	30322008	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr18:30322008G>A	uc002kxm.1	-	3	1340	c.952C>T	c.(952-954)CGC>TGC	p.R318C	KLHL14_uc010dmd.1_5'UTR	NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	318						cytosol|endoplasmic reticulum membrane				ovary(1)	1						TTGTTAGAGCGAATTCTTCAC	0.428													14	31					0	0	0.004007	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555154	44555154	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr18:44555154C>T	uc010xdb.1	-	1	1296	c.1060G>A	c.(1060-1062)GAC>AAC	p.D354N	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	354	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						CCTTCCACGTCGCCGAGGGCG	0.662													19	517					0	0	0.021523	0	0
TCEB3B	51224	broad.mit.edu	37	18	44561083	44561083	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr18:44561083C>T	uc002lcr.1	-	1	906	c.553G>A	c.(553-555)GAG>AAG	p.E185K	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	185					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GCAGCGGGCTCAGGGCCCTCG	0.692													23	41					0	0	0.016522	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45566602	45566602	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr18:45566602C>T	uc002lda.2	-	1	893	c.877G>A	c.(877-879)GAG>AAG	p.E293K	ZBTB7C_uc002ldb.2_Missense_Mutation_p.E293K|ZBTB7C_uc010dnu.2_Missense_Mutation_p.E302K|ZBTB7C_uc010dnv.2_Missense_Mutation_p.E315K|ZBTB7C_uc010dnw.2_Missense_Mutation_p.E293K|ZBTB7C_uc010dnx.1_Missense_Mutation_p.E293K|ZBTB7C_uc010dny.1_Missense_Mutation_p.E293K|ZBTB7C_uc010dnz.1_Missense_Mutation_p.E315K|ZBTB7C_uc010dob.1_Missense_Mutation_p.E293K|ZBTB7C_uc010doc.1_Missense_Mutation_p.E302K|ZBTB7C_uc010dod.1_Missense_Mutation_p.E315K|ZBTB7C_uc010doe.1_Missense_Mutation_p.E293K|ZBTB7C_uc010dof.1_Missense_Mutation_p.E293K|ZBTB7C_uc010dog.1_Missense_Mutation_p.E293K|ZBTB7C_uc010doh.1_Missense_Mutation_p.E302K|ZBTB7C_uc010doi.1_Missense_Mutation_p.E293K|ZBTB7C_uc010doj.1_Missense_Mutation_p.E302K|ZBTB7C_uc010dok.1_Missense_Mutation_p.E342K|ZBTB7C_uc010dol.1_Missense_Mutation_p.E302K|ZBTB7C_uc010doa.1_Missense_Mutation_p.E315K|ZBTB7C_uc010don.1_Missense_Mutation_p.E301K|ZBTB7C_uc010doo.1_Missense_Mutation_p.E293K|ZBTB7C_uc010dop.1_Missense_Mutation_p.E293K|ZBTB7C_uc010doq.1_Missense_Mutation_p.E302K|ZBTB7C_uc010dor.1_Missense_Mutation_p.E315K|ZBTB7C_uc010dos.1_Missense_Mutation_p.E293K|ZBTB7C_uc010dot.1_Missense_Mutation_p.E293K|ZBTB7C_uc010dou.1_Missense_Mutation_p.E302K|ZBTB7C_uc010dom.1_Missense_Mutation_p.E302K	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	293						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TCCTCCTTCTCCTCCTCCTTG	0.617													16	44					0	0	0.004007	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45567077	45567077	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr18:45567077C>T	uc002lda.2	-	1	418	c.402G>A	c.(400-402)GGG>GGA	p.G134G	ZBTB7C_uc002ldb.2_Silent_p.G134G|ZBTB7C_uc010dnu.2_Silent_p.G143G|ZBTB7C_uc010dnv.2_Silent_p.G156G|ZBTB7C_uc010dnw.2_Silent_p.G134G|ZBTB7C_uc010dnx.1_Silent_p.G134G|ZBTB7C_uc010dny.1_Silent_p.G134G|ZBTB7C_uc010dnz.1_Silent_p.G156G|ZBTB7C_uc010dob.1_Silent_p.G134G|ZBTB7C_uc010doc.1_Silent_p.G143G|ZBTB7C_uc010dod.1_Silent_p.G156G|ZBTB7C_uc010doe.1_Silent_p.G134G|ZBTB7C_uc010dof.1_Silent_p.G134G|ZBTB7C_uc010dog.1_Silent_p.G134G|ZBTB7C_uc010doh.1_Silent_p.G143G|ZBTB7C_uc010doi.1_Silent_p.G134G|ZBTB7C_uc010doj.1_Silent_p.G143G|ZBTB7C_uc010dok.1_Silent_p.G183G|ZBTB7C_uc010dol.1_Silent_p.G143G|ZBTB7C_uc010doa.1_Silent_p.G156G|ZBTB7C_uc010don.1_Silent_p.G142G|ZBTB7C_uc010doo.1_Silent_p.G134G|ZBTB7C_uc010dop.1_Silent_p.G134G|ZBTB7C_uc010doq.1_Silent_p.G143G|ZBTB7C_uc010dor.1_Silent_p.G156G|ZBTB7C_uc010dos.1_Silent_p.G134G|ZBTB7C_uc010dot.1_Silent_p.G134G|ZBTB7C_uc010dou.1_Silent_p.G143G|ZBTB7C_uc010dom.1_Silent_p.G143G	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	134	Glu-rich.|Asp-rich.					intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						catcctcctcccccccgtccc	0.279													9	25					0	0	0.004482	0	0
MYO5B	4645	broad.mit.edu	37	18	47527636	47527636	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr18:47527636G>A	uc002leb.2	-	5	889	c.601C>T	c.(601-603)CCC>TCC	p.P201S	MYO5B_uc002lec.1_Missense_Mutation_p.P200S	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	201	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TCCATGATGGGACTGGATGCC	0.592													22	70					0	0	0.012319	0	0
DCC	1630	broad.mit.edu	37	18	50912500	50912500	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr18:50912500C>T	uc002lfe.1	+	16	3034	c.2447C>T	c.(2446-2448)TCT>TTT	p.S816F	DCC_uc010xdr.1_Missense_Mutation_p.S664F|DCC_uc010dpf.1_Missense_Mutation_p.S471F	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	816	Extracellular (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		ACCACCAGGTCTATAACCGGT	0.333													10	30					0	0	0.008291	0	0
Unknown	0	broad.mit.edu	37	18	54814967	54814967	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr18:54814967G>A	uc002lgm.2	+	1	632	c.424G>A	c.(424-426)GAA>AAA	p.E142K						RecName: Full=Protein FAM44C;																		AATAATTCATGAATTCCTGGT	0.507													13	19					0	0	0.016723	0	0
CDH20	28316	broad.mit.edu	37	18	59221766	59221766	+	Nonsense_Mutation	SNP	T	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr18:59221766T>A	uc010dps.1	+	11	2256	c.2244T>A	c.(2242-2244)TAT>TAA	p.Y748*	CDH20_uc002lif.2_Nonsense_Mutation_p.Y742*	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	748	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				TCCAGACGTATATGTTCGAGG	0.647													9	21					0	0	0.004482	0	0
C19orf21	126353	broad.mit.edu	37	19	758060	758060	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:758060G>A	uc002lpo.2	+	2	1197	c.1114G>A	c.(1114-1116)GTG>ATG	p.V372M		NM_173481	NP_775752	Q8IVT2	CS021_HUMAN	hypothetical protein LOC126353	372										upper_aerodigestive_tract(1)	1		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000145)|all_lung(49;0.000236)|Breast(49;0.0014)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGGCCTGCACGTGGGCCGGGC	0.701													8	8					0	0	0.006214	0	0
ZNF556	80032	broad.mit.edu	37	19	2877344	2877344	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:2877344C>T	uc002lwp.1	+	4	475	c.388C>T	c.(388-390)CGA>TGA	p.R130*	ZNF556_uc002lwq.2_Nonsense_Mutation_p.R129*	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	130					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGAAAGACTCGAAATTGTAA	0.408													20	17					0	0	0.007413	0	0
TBXA2R	6915	broad.mit.edu	37	19	3595724	3595724	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:3595724G>A	uc002lyg.1	-	3	1208	c.994C>T	c.(994-996)CTC>TTC	p.L332F	TBXA2R_uc002lye.1_Missense_Mutation_p.P202L	NM_001060	NP_001051	P21731	TA2R_HUMAN	thromboxane A2 receptor isoform alpha	332	Cytoplasmic (Potential).				platelet activation	integral to plasma membrane	guanyl-nucleotide exchange factor activity|protein binding|thromboxane A2 receptor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)	Ridogrel(DB01207)	TGGGGCTGGAGGGACAGCGAC	0.706													11	4					0	0	0.010729	0	0
ATCAY	85300	broad.mit.edu	37	19	3905628	3905628	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:3905628G>A	uc002lyy.3	+	4	763	c.333G>A	c.(331-333)GGG>GGA	p.G111G	ATCAY_uc010xhz.1_Silent_p.G117G	NM_033064	NP_149053	Q86WG3	ATCAY_HUMAN	caytaxin	111					transport		protein binding			breast(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00485)|STAD - Stomach adenocarcinoma(1328;0.183)		AGTTCCTGGGGAATGGCAACG	0.582													43	43					0	0	0.014410	0	0
C3	718	broad.mit.edu	37	19	6707097	6707097	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:6707097G>A	uc002mfm.2	-	17	2297	c.2235C>T	c.(2233-2235)GGC>GGT	p.G745G		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	745					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TCCTGGCCAGGCCCAGGTGGC	0.672													27	11					0	0	0.007291	0	0
EMR1	2015	broad.mit.edu	37	19	6903930	6903930	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:6903930G>A	uc002mfw.2	+	7	809	c.771G>A	c.(769-771)TTG>TTA	p.L257L	EMR1_uc010dvc.2_Silent_p.L257L|EMR1_uc010dvb.2_Silent_p.L205L|EMR1_uc010xji.1_Silent_p.L116L|EMR1_uc010xjj.1_Intron	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	257	EGF-like 5; calcium-binding (Potential).|Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					ATGGACAGTTGAATTTCACAG	0.453													15	51					0	0	0.003163	0	0
KIAA1543	57662	broad.mit.edu	37	19	7671210	7671210	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:7671210G>A	uc002mgv.3	+	3	557	c.456G>A	c.(454-456)TGG>TGA	p.W152*	KIAA1543_uc002mgu.3_Nonsense_Mutation_p.W152*	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	152					epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						CCTTCGAGTGGACAAAGACCC	0.627													56	61					0	0	0.014410	0	0
EVI5L	115704	broad.mit.edu	37	19	7916645	7916645	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:7916645G>A	uc002min.2	+	8	1130	c.976G>A	c.(976-978)GGG>AGG	p.G326R	EVI5L_uc010xjz.1_Missense_Mutation_p.G326R|EVI5L_uc002mio.1_Missense_Mutation_p.G57R	NM_145245	NP_660288	Q96CN4	EVI5L_HUMAN	ecotropic viral integration site 5-like isoform	326						intracellular	protein binding|Rab GTPase activator activity			ovary(1)	1						GGACATGGAGGGGATGTCCCA	0.667													5	15					0	0	0.014758	0	0
FBN3	84467	broad.mit.edu	37	19	8194148	8194148	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:8194148C>T	uc002mjf.2	-	16	2167	c.2146G>A	c.(2146-2148)GGT>AGT	p.G716S		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	716	EGF-like 8; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CCTGAGGCACCTGCCTCATAA	0.627													23	21					0	0	0.014323	0	0
HNRNPM	4670	broad.mit.edu	37	19	8536242	8536242	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:8536242C>T	uc010dwe.2	+	10	1008	c.928C>T	c.(928-930)CCA>TCA	p.P310S	HNRNPM_uc010dwc.1_Missense_Mutation_p.P310S|HNRNPM_uc010xke.1_Missense_Mutation_p.P271S|HNRNPM_uc010dwd.2_Missense_Mutation_p.P271S|HNRNPM_uc002mka.2_Missense_Mutation_p.P190S	NM_005968	NP_005959	P52272	HNRPM_HUMAN	heterogeneous nuclear ribonucleoprotein M	310					alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|integral to plasma membrane|nuclear matrix|nucleolus|paraspeckles	nucleotide binding|protein domain specific binding|RNA binding				0						GGGGTTAGGACCAGGAGGGCA	0.478													28	19					0	0	0.010818	0	0
MUC16	94025	broad.mit.edu	37	19	8995652	8995652	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:8995652G>A	uc002mkp.2	-	63	41540	c.41336C>T	c.(41335-41337)TCG>TTG	p.S13779L	MUC16_uc010dwi.2_Intron|MUC16_uc010dwj.2_Missense_Mutation_p.S596L|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13781	Extracellular (Potential).|ANK 1.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCCAAATATCGAGGCTGGAGT	0.463													11	25					0	0	0.016723	0	0
MUC16	94025	broad.mit.edu	37	19	9046923	9046923	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:9046923C>T	uc002mkp.2	-	5	34912	c.34708G>A	c.(34708-34710)GAA>AAA	p.E11570K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11572	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCTCTGGTTCATATGGGGTC	0.502													16	21					0	0	0.008871	0	0
MUC16	94025	broad.mit.edu	37	19	9062258	9062259	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:9062258_9062259GG>AA	uc002mkp.2	-	3	25391_25392	c.25187_25188CC>TT	c.(25186-25188)TCC>TTT	p.S8396F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8398	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTCAGAAGTGGATATGGAAAC	0.485													27	22					0	0	0.004672	0	0
MUC16	94025	broad.mit.edu	37	19	9088081	9088081	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:9088081G>A	uc002mkp.2	-	1	3938	c.3734C>T	c.(3733-3735)TCA>TTA	p.S1245L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1245	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTGTTTGTTGATTCAGGGTA	0.507													187	183					0	0	0.014410	0	0
ZNF426	79088	broad.mit.edu	37	19	9639071	9639071	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:9639071A>T	uc002mlq.2	-	8	1914	c.1650T>A	c.(1648-1650)CAT>CAA	p.H550Q	ZNF426_uc010dws.2_Missense_Mutation_p.H512Q	NM_024106	NP_077011	Q9BUY5	ZN426_HUMAN	zinc finger protein 426	550	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GAATTTGTTCATGTCTTCGAA	0.388													30	25					0	0	0.013726	0	0
CACNA1A	773	broad.mit.edu	37	19	13365963	13365963	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:13365963G>A	uc010dze.2	-	29	4940	c.4704C>T	c.(4702-4704)TTC>TTT	p.F1568F	CACNA1A_uc010xnd.1_Silent_p.F273F|CACNA1A_uc002mwx.3_Silent_p.F273F|CACNA1A_uc010dzc.2_Silent_p.F1093F|CACNA1A_uc002mwy.3_Silent_p.F1567F|CACNA1A_uc010xne.1_Silent_p.F1096F|CACNA1A_uc002mwv.3_Silent_p.F84F	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1568	Helical; Name=S1 of repeat IV; (Potential).|IV.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	TCGTGTACTCGAAAGGCGGAG	0.488													26	24					0	0	0.008361	0	0
PGLYRP2	114770	broad.mit.edu	37	19	15587399	15587399	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:15587399C>T	uc002nbf.3	-	2	215	c.82G>A	c.(82-84)GAC>AAC	p.D28N	PGLYRP2_uc002nbg.3_Missense_Mutation_p.D28N	NM_052890	NP_443122	Q96PD5	PGRP2_HUMAN	peptidoglycan recognition protein 2 precursor	28					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptide amidation|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)	3						ATGACAGAGTCCATGAGCAGG	0.567													7	14					0	0	0.003080	0	0
OR10H4	126541	broad.mit.edu	37	19	16059926	16059926	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:16059926C>T	uc010xov.1	+	1	109	c.109C>T	c.(109-111)CTG>TTG	p.L37L		NM_001004465	NP_001004465	Q8NGA5	O10H4_HUMAN	olfactory receptor, family 10, subfamily H,	37	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						CCTGATGTTCCTGTTCACATT	0.498													80	85					0	0	0.014410	0	0
USHBP1	83878	broad.mit.edu	37	19	17373418	17373418	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:17373418G>A	uc002nfs.1	-	4	698	c.585C>T	c.(583-585)GTC>GTT	p.V195V	USHBP1_uc002nft.1_RNA|USHBP1_uc010xpk.1_Silent_p.V131V|USHBP1_uc010eam.1_Silent_p.V123V	NM_031941	NP_114147	Q8N6Y0	USBP1_HUMAN	Usher syndrome 1C binding protein 1	195	Potential.						PDZ domain binding			ovary(1)	1						CCTGCGTGCGGACCAGCTCAT	0.657													41	25					0	0	0.014410	0	0
ABHD8	79575	broad.mit.edu	37	19	17412216	17412216	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:17412216C>T	uc002ngb.3	-	2	450	c.210G>A	c.(208-210)GGG>GGA	p.G70G		NM_024527	NP_078803	Q96I13	ABHD8_HUMAN	abhydrolase domain containing 8	70							hydrolase activity				0						CGGAGAGGTCCCCCTGGGCTG	0.697													8	28					0	0	0.003080	0	0
UNC13A	23025	broad.mit.edu	37	19	17766795	17766795	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:17766795C>T	uc002nhd.2	-	11	1444	c.1444G>A	c.(1444-1446)GAG>AAG	p.E482K		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	394					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						TCGGGGGCCTCGGTGGGTGCC	0.662													12	7					0	0	0.010729	0	0
COMP	1311	broad.mit.edu	37	19	18895712	18895712	+	Silent	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:18895712T>C	uc002nke.2	-	16	1944	c.1908A>G	c.(1906-1908)CAA>CAG	p.Q636Q	COMP_uc002nkd.2_Silent_p.Q603Q|COMP_uc010xqj.1_Silent_p.Q583Q	NM_000095	NP_000086	P49747	COMP_HUMAN	cartilage oligomeric matrix protein precursor	636	Mediates cell survival and induction of the IAP family of survival proteins.|TSP C-terminal.				anti-apoptosis|apoptosis|cell adhesion|limb development	extracellular space|proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent|heparan sulfate proteoglycan binding|heparin binding				0						GCACCTTGAGTTGGATGCCAG	0.617													33	22					0	0	0.010818	0	0
SF4	57794	broad.mit.edu	37	19	19416756	19416756	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:19416756G>A	uc002nmh.2	-	4	442	c.440C>T	c.(439-441)TCC>TTC	p.S147F	SF4_uc002nmg.2_5'Flank|SF4_uc002nmi.2_5'UTR|SF4_uc002nmj.2_5'UTR|SF4_uc010xqr.1_RNA|SF4_uc010xqs.1_RNA	NM_172231	NP_757386	Q8IWZ8	SUGP1_HUMAN	splicing factor 4	147					nuclear mRNA splicing, via spliceosome	nucleoplasm|spliceosomal complex	RNA binding				0						CTTGGCGTGGGAGTAGCTCTT	0.672													31	17					0	0	0.012213	0	0
CILP2	148113	broad.mit.edu	37	19	19656395	19656395	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:19656395C>T	uc002nmv.3	+	8	3126	c.3041C>T	c.(3040-3042)CCC>CTC	p.P1014L	CILP2_uc002nmw.3_Missense_Mutation_p.P1020L	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	1014						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						ACCATTATGCCCCAGGGCAGC	0.697													6	7					0	0	0.001984	0	0
ZNF99	7652	broad.mit.edu	37	19	22939443	22939443	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:22939443G>A	uc010xrh.1	-	7	2728	c.2728C>T	c.(2728-2730)CAT>TAT	p.H910Y		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TCCCCAGTATGAATTATCTTA	0.358													18	27					0	0	0.007413	0	0
UQCRFS1	7386	broad.mit.edu	37	19	29698939	29698939	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:29698939G>A	uc002nsd.2	-	2	452	c.341C>T	c.(340-342)TCC>TTC	p.S114F		NM_006003	NP_005994	P47985	UCRI_HUMAN	ubiquinol-cytochrome c reductase, Rieske	114					respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain complex III	2 iron, 2 sulfur cluster binding|metal ion binding|ubiquinol-cytochrome-c reductase activity				0	Breast(6;0.0545)|Esophageal squamous(110;0.239)		Lung(7;0.092)			TACCAAATAGGAGAAACCTTT	0.478													10	48					0	0	0.013537	0	0
ZNF536	9745	broad.mit.edu	37	19	31040061	31040061	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:31040061G>A	uc002nsu.1	+	4	3673	c.3535G>A	c.(3535-3537)GAT>AAT	p.D1179N	ZNF536_uc010edd.1_Missense_Mutation_p.D1179N	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1179					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GGAGAACAACGATGAAGAGGA	0.557													18	50					0	0	0.008871	0	0
ZNF536	9745	broad.mit.edu	37	19	31040064	31040064	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:31040064G>A	uc002nsu.1	+	4	3676	c.3538G>A	c.(3538-3540)GAA>AAA	p.E1180K	ZNF536_uc010edd.1_Missense_Mutation_p.E1180K	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1180					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GAACAACGATGAAGAGGATGT	0.552													19	49					0	0	0.008871	0	0
WDR88	126248	broad.mit.edu	37	19	33639704	33639704	+	Silent	SNP	C	T	T	rs112724972	byFrequency	TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:33639704C>T	uc002nui.2	+	5	645	c.567C>T	c.(565-567)ATC>ATT	p.I189I		NM_173479	NP_775750	Q6ZMY6	WDR88_HUMAN	PQQ repeat and WD repeat domain containing	189	WD 3.									ovary(1)|breast(1)|central_nervous_system(1)	3	Esophageal squamous(110;0.137)					ATACCTTCATCGTCTCCTGTA	0.358													25	108					0	0	0.018920	0	0
WDR88	126248	broad.mit.edu	37	19	33639710	33639710	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:33639710C>T	uc002nui.2	+	5	651	c.573C>T	c.(571-573)TCC>TCT	p.S191S		NM_173479	NP_775750	Q6ZMY6	WDR88_HUMAN	PQQ repeat and WD repeat domain containing	191	WD 3.									ovary(1)|breast(1)|central_nervous_system(1)	3	Esophageal squamous(110;0.137)					TCATCGTCTCCTGTAAGTTTT	0.378													27	105					0	0	0.004656	0	0
WTIP	126374	broad.mit.edu	37	19	34985514	34985514	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:34985514C>T	uc002nvm.2	+	6	1055	c.1055C>T	c.(1054-1056)TCC>TTC	p.S352F		NM_001080436	NP_001073905			Wilms tumor 1 interacting protein												0	all_lung(56;5.94e-07)|Lung NSC(56;9.35e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.211)			AAATGCGCCTCCTGTGCCCGT	0.577													6	23					0	0	0.003080	0	0
CD22	933	broad.mit.edu	37	19	35827096	35827096	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:35827096G>A	uc010edt.2	+	4	647	c.570G>A	c.(568-570)TCG>TCA	p.S190S	CD22_uc010xst.1_Silent_p.S18S|CD22_uc010edu.2_Silent_p.S190S|CD22_uc010edv.2_Silent_p.S190S|CD22_uc002nzb.3_Silent_p.S190S|CD22_uc010edx.2_5'Flank	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	190	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	CTGTCACCTCGACCTCCTTGA	0.547													25	60					0	0	0.004656	0	0
NFKBID	84807	broad.mit.edu	37	19	36381329	36381329	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:36381329G>A	uc002oci.1	-	10	1244	c.670C>T	c.(670-672)CAG>TAG	p.Q224*	NFKBID_uc002och.1_Nonsense_Mutation_p.Q61*|NFKBID_uc002ocj.1_Nonsense_Mutation_p.Q239*	NM_139239	NP_640332	Q8NI38	IKBD_HUMAN	nuclear factor of kappa light polypeptide gene	224	ANK 5.				inflammatory response	nucleus					0						AGCAGCAGCTGAACCAGAGTG	0.612													30	62					0	0	0.015359	0	0
WDR62	284403	broad.mit.edu	37	19	36558741	36558741	+	Silent	SNP	A	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:36558741A>T	uc002odc.2	+	7	802	c.711A>T	c.(709-711)ACA>ACT	p.T237T	WDR62_uc002odd.2_Silent_p.T237T|WDR62_uc002odb.2_Silent_p.T237T	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	237					cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			TGACGAGCACAGTGCCCCTTG	0.592													14	50					0	0	0.006122	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38572802	38572802	+	Silent	SNP	C	T	T	rs141215232		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:38572802C>T	uc002ohk.2	+	3	1106	c.597C>T	c.(595-597)TTC>TTT	p.F199F		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	199					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			TGCCCCTCTTCCGCGAGTACG	0.706													13	34					0	0	0.020292	0	0
PAPL	390928	broad.mit.edu	37	19	39591408	39591408	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:39591408C>T	uc002oki.2	+	7	996	c.722C>T	c.(721-723)TCC>TTC	p.S241F	PAPL_uc010egl.2_Missense_Mutation_p.P200S	NM_001004318	NP_001004318	Q6ZNF0	PAPL_HUMAN	iron/zinc purple acid phosphatase-like protein	241						extracellular region	acid phosphatase activity|metal ion binding				0						CACATCATCTCCTTCTCCACC	0.607													23	41					0	0	0.004656	0	0
PLEKHG2	64857	broad.mit.edu	37	19	39913839	39913839	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:39913839G>A	uc010xuz.1	+	18	2470	c.2145G>A	c.(2143-2145)GGG>GGA	p.G715G	PLEKHG2_uc010xuy.1_Silent_p.G656G|PLEKHG2_uc002olj.2_Intron|PLEKHG2_uc010xva.1_Silent_p.G493G	NM_022835	NP_073746	Q9H7P9	PKHG2_HUMAN	common-site lymphoma/leukemia guanine nucleotide	715					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			skin(2)|pancreas(1)|breast(1)	4	all_cancers(60;3.08e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;6.57e-07)|Ovarian(47;0.0569)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			TGTTTTCTGGGAGCAATCCTG	0.592													31	79					0	0	0.009535	0	0
FCGBP	8857	broad.mit.edu	37	19	40408560	40408560	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:40408560G>A	uc002omp.3	-	8	4287	c.4279C>T	c.(4279-4281)CCC>TCC	p.P1427S		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1427	VWFD 3.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GGCAGGCAGGGAGAGTCGGGC	0.627													17	37					0	0	0.004007	0	0
FCGBP	8857	broad.mit.edu	37	19	40419769	40419769	+	Silent	SNP	G	A	A	rs147457166	byFrequency	TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:40419769G>A	uc002omp.3	-	6	3233	c.3225C>T	c.(3223-3225)TTC>TTT	p.F1075F		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1075	VWFD 2.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GGCACTCCCGGAAGGGCCCCT	0.642													26	90					0	0	0.008361	0	0
CYP2B6	1555	broad.mit.edu	37	19	41522721	41522721	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:41522721C>T	uc002opr.1	+	9	1472	c.1465C>T	c.(1465-1467)CTG>TTG	p.L489L	CYP2A7_uc002opo.2_Intron|CYP2B6_uc010xvu.1_Silent_p.L289L	NM_000767	NP_000758	P20813	CP2B6_HUMAN	cytochrome P450, family 2, subfamily B,	489					cellular ketone metabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(20;0.00322)		Bupropion(DB01156)|Butalbital(DB00241)|Carbamazepine(DB00564)|Clopidogrel(DB00758)|Cyclophosphamide(DB00531)|Efavirenz(DB00625)|Ifosfamide(DB01181)|Memantine(DB01043)|Meperidine(DB00454)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Midazolam(DB00683)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicotine(DB00184)|Orphenadrine(DB01173)|Phenytoin(DB00252)|Propofol(DB00818)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Ticlopidine(DB00208)|Troleandomycin(DB01361)	GATCCGCTTCCTGCCCCGCTG	0.592													10	21					0	0	0.010729	0	0
CYP2A13	1553	broad.mit.edu	37	19	41600950	41600950	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:41600950C>T	uc002opt.2	+	8	1257	c.1248C>T	c.(1246-1248)TTC>TTT	p.F416F		NM_000766	NP_000757	Q16696	CP2AD_HUMAN	cytochrome P450, family 2, subfamily A,	416					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|heme binding			ovary(2)|skin(1)	3					Clomipramine(DB01242)|Nicotine(DB00184)	CCCAGCACTTCCTGGATAAGA	0.567													44	121					0	0	0.008740	0	0
ATP1A3	478	broad.mit.edu	37	19	42492128	42492128	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:42492128C>T	uc002osg.2	-	4	471	c.317G>A	c.(316-318)GGT>GAT	p.G106D	ATP1A3_uc010xwf.1_Missense_Mutation_p.G117D|ATP1A3_uc010xwg.1_Missense_Mutation_p.G76D|ATP1A3_uc010xwh.1_Missense_Mutation_p.G119D|ATP1A3_uc002osh.2_Missense_Mutation_p.G106D	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	106	Extracellular (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						CGCCTGGATACCGTAGGCCAG	0.622													21	108					0	0	0.018920	0	0
CIC	23152	broad.mit.edu	37	19	42794405	42794405	+	Missense_Mutation	SNP	T	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:42794405T>A	uc002otf.1	+	10	1525	c.1485T>A	c.(1483-1485)TTT>TTA	p.F495L		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	495					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				GGAAGGTGTTTTCACCTGTGA	0.617			T	DUX4	soft tissue sarcoma								35	79					0	0	0.019004	0	0
CEACAM8	1088	broad.mit.edu	37	19	43093018	43093018	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:43093018C>T	uc002oud.2	-	4	978	c.876G>A	c.(874-876)AAG>AAA	p.K292K	uc010eif.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron	NM_001816	NP_001807	P31997	CEAM8_HUMAN	carcinoembryonic antigen-related cell adhesion	292	Ig-like C2-type 2.				immune response	anchored to membrane|extracellular space|integral to plasma membrane				ovary(1)	1		Prostate(69;0.00899)				ATCCGCTGTTCTTTGTAGTGA	0.512													31	65					0	0	0.007291	0	0
PSG2	5670	broad.mit.edu	37	19	43575951	43575951	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:43575951G>A	uc002ovr.2	-	4	958	c.865C>T	c.(865-867)CCC>TCC	p.P289S	PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG2_uc002ovq.3_Missense_Mutation_p.P289S|PSG2_uc010eiq.1_Missense_Mutation_p.P289S|PSG2_uc002ovs.3_Missense_Mutation_p.P289S|PSG2_uc002ovt.3_Missense_Mutation_p.P289S	NM_031246	NP_112536	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	289	Ig-like C2-type 2.				cell migration|female pregnancy	extracellular region					0		Prostate(69;0.00682)				GTAATTTGGGGGATAAACAGA	0.458													31	122					0	0	0.009535	0	0
PSG9	5678	broad.mit.edu	37	19	43763210	43763210	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:43763210C>T	uc002owd.3	-	4	886	c.787G>A	c.(787-789)GAA>AAA	p.E263K	PSG9_uc002owe.3_Intron|PSG9_uc010xwm.1_Missense_Mutation_p.E170K|PSG9_uc002owf.3_Intron|PSG9_uc002owg.2_Intron|PSG9_uc002owh.2_Intron	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	263	Ig-like C2-type 2.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				CTCTTAGGTTCACAGGTGAAG	0.493													91	215					0	0	0.014410	0	0
ZNF284	342909	broad.mit.edu	37	19	44590395	44590395	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:44590395G>A	uc002oyg.1	+	5	980	c.764G>A	c.(763-765)GGA>GAA	p.G255E	ZNF284_uc010ejd.2_RNA	NM_001037813	NP_001032902	Q2VY69	ZN284_HUMAN	zinc finger protein 284	255					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0435)				TTACACACAGGAGAAAAACCT	0.428													15	56					0	0	0.020292	0	0
BCL3	602	broad.mit.edu	37	19	45254573	45254573	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:45254573C>T	uc010xxe.1	+	2	416	c.346C>T	c.(346-348)CCC>TCC	p.P116S		NM_005178	NP_005169	P20749	BCL3_HUMAN	B-cell CLL/lymphoma 3	116	Pro-rich.				DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|I-kappaB kinase/NF-kappaB cascade|maintenance of protein location in nucleus|negative regulation of apoptosis|negative regulation of interleukin-8 biosynthetic process|negative regulation of transcription, DNA-dependent|positive regulation of translation|protein import into nucleus, translocation|regulation of DNA binding|regulation of NF-kappaB import into nucleus|response to UV-C|response to virus	Bcl3-Bcl10 complex|Bcl3/NF-kappaB2 complex|nucleus|perinuclear region of cytoplasm	protein binding, bridging|transcription factor binding			ovary(1)|lung(1)	2	Lung NSC(12;0.000698)|all_lung(12;0.002)	Ovarian(192;0.0728)				CATGATGTGCCCCATGGAACA	0.592			T	IGH@	CLL 								232	608					0	0	0.014410	0	0
FAM83E	54854	broad.mit.edu	37	19	49106801	49106801	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:49106801C>T	uc002pjn.2	-	4	1191	c.1126G>A	c.(1126-1128)GAC>AAC	p.D376N		NM_017708	NP_060178	Q2M2I3	FA83E_HUMAN	hypothetical protein LOC54854	376										ovary(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		CGGCTTAGGTCCCACATGGAG	0.512													11	24					0	0	0.010729	0	0
SPHK2	56848	broad.mit.edu	37	19	49131485	49131485	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:49131485C>T	uc002pjr.2	+	6	1189	c.823C>T	c.(823-825)CCC>TCC	p.P275S	SPHK2_uc010xzt.1_Missense_Mutation_p.P216S|SPHK2_uc002pjs.2_Missense_Mutation_p.P275S|SPHK2_uc002pjt.2_Missense_Mutation_p.P69S|SPHK2_uc002pju.2_Missense_Mutation_p.P239S|SPHK2_uc002pjv.2_Missense_Mutation_p.P239S|SPHK2_uc002pjw.2_Missense_Mutation_p.P337S|SPHK2_uc010xzu.1_Missense_Mutation_p.P239S	NM_020126	NP_064511	Q9NRA0	SPHK2_HUMAN	sphingosine kinase 2	275	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis|cell proliferation|sphinganine-1-phosphate biosynthetic process	cytosol|lysosomal membrane|membrane fraction	ATP binding|D-erythro-sphingosine kinase activity|diacylglycerol kinase activity|Ras GTPase binding|sphinganine kinase activity			lung(1)	1		all_lung(116;0.000125)|Lung NSC(112;0.000202)|all_epithelial(76;0.000283)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		GGGCATCCTCCCCTGCGGCTC	0.652													13	26					0	0	0.003163	0	0
KCNC3	3748	broad.mit.edu	37	19	50823976	50823976	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:50823976G>A	uc002pru.1	-	3	2339	c.2044C>T	c.(2044-2046)CAG>TAG	p.Q682*	KCNC3_uc002prt.1_Nonsense_Mutation_p.Q318*	NM_004977	NP_004968	Q14003	KCNC3_HUMAN	Shaw-related voltage-gated potassium channel	682	Cytoplasmic (Potential).				cell death	voltage-gated potassium channel complex	voltage-gated potassium channel activity			pancreas(1)	1		all_neural(266;0.057)|Ovarian(192;0.208)		OV - Ovarian serous cystadenocarcinoma(262;0.00283)|GBM - Glioblastoma multiforme(134;0.0181)		ATGGCAGGCTGGTCAATGGCT	0.647													18	31					0	0	0.008871	0	0
KLK11	11012	broad.mit.edu	37	19	51530734	51530734	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:51530734C>T	uc002pvd.1	-	1	152	c.40G>A	c.(40-42)GGC>AGC	p.G14S	KLK11_uc002pvb.1_5'Flank|KLK11_uc002pve.1_5'UTR|KLK11_uc002pvf.1_Intron|KLK11_uc002pvc.3_5'Flank|KLK11_uc010eom.2_5'Flank	NM_144947	NP_659196	Q9UBX7	KLK11_HUMAN	kallikrein 11 isoform 2 precursor	14					proteolysis	extracellular region	serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00327)|GBM - Glioblastoma multiforme(134;0.00878)		AGACCTCTGCCCGATGACTTC	0.617													45	122					0	0	0.014410	0	0
FPR2	2358	broad.mit.edu	37	19	52272088	52272088	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:52272088C>T	uc002pxr.2	+	2	222	c.177C>T	c.(175-177)GTC>GTT	p.V59V	FPR2_uc002pxs.3_Silent_p.V59V|FPR2_uc010epf.2_Silent_p.V59V	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	59	Cytoplasmic (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						CACGCACAGTCACCACCATCT	0.552													34	64					0	0	0.019004	0	0
ZNF577	84765	broad.mit.edu	37	19	52376885	52376886	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:52376885_52376886GG>AA	uc010yde.1	-	7	748_749	c.357_358CC>TT	c.(355-360)CTCCAT>CTTTAT	p.H120Y	ZNF577_uc010ydd.1_Intron|ZNF577_uc002pxx.3_Intron|ZNF577_uc002pxv.2_Missense_Mutation_p.H113Y|ZNF577_uc002pxw.2_Intron	NM_032679	NP_116068	Q9BSK1	ZN577_HUMAN	zinc finger protein 577 isoform a	120					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.0602)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		CGCTTGATATGGAGGCATGATC	0.371													17	36					0	0	0.004672	0	0
MIR520A	574467	broad.mit.edu	37	19	54194139	54194139	+	RNA	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:54194139G>A	hsa-mir-520a|MI0003149	+			c.5G>A																				0						GAAGATCTCAGGCTGTGACCC	0.433													48	124					0	0	0.014410	0	0
LILRA3	11026	broad.mit.edu	37	19	54803734	54803734	+	Silent	SNP	G	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:54803734G>T	uc002qfd.2	-	3	155	c.90C>A	c.(88-90)ACC>ACA	p.T30T	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Silent_p.T30T	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	30	Ig-like C2-type 1.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CAGCCCAGAGGGTGGGCTTGG	0.562													26	73					7.01153e-11	7.29332e-11	0.007291	1	0
LILRA2	11027	broad.mit.edu	37	19	55085963	55085963	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:55085963G>A	uc002qgg.3	+	3	355	c.266G>A	c.(265-267)TGG>TAG	p.W89*	LILRA2_uc010ern.2_Nonsense_Mutation_p.W89*|LILRA2_uc002qgf.2_Nonsense_Mutation_p.W89*|LILRA2_uc010yfe.1_Nonsense_Mutation_p.W89*|LILRA2_uc010yff.1_Nonsense_Mutation_p.W77*|LILRA2_uc010ero.2_Nonsense_Mutation_p.W77*|LILRA2_uc010yfg.1_Nonsense_Mutation_p.W89*	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	89	Extracellular (Potential).|Ig-like C2-type 1.				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		TCCATCACCTGGGAACACGCA	0.527													21	56					0	0	0.016522	0	0
KIR2DS4	3809	broad.mit.edu	37	19	55351117	55351117	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:55351117G>A	uc002qhm.1	+	5	673	c.627G>A	c.(625-627)TGG>TGA	p.W209*	KIR2DS4_uc010yfj.1_Missense_Mutation_p.G195D|KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Missense_Mutation_p.G202D|KIR2DS4_uc002qhn.1_Intron	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	209	Extracellular (Potential).					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		CCTACGAGTGGTCAAACTCGA	0.557													71	216					0	0	0.014410	0	0
PTPRH	5794	broad.mit.edu	37	19	55711784	55711784	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:55711784G>A	uc002qjq.2	-	7	1313	c.1240C>T	c.(1240-1242)CCT>TCT	p.P414S	PTPRH_uc010esv.2_Missense_Mutation_p.P236S|PTPRH_uc002qjs.2_Missense_Mutation_p.P421S	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	414	Extracellular (Potential).|Fibronectin type-III 5.				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		TAGTCCTGAGGGTATGGGCCA	0.547													33	63					0	0	0.015359	0	0
TMEM190	147744	broad.mit.edu	37	19	55889382	55889382	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:55889382C>T	uc002qkt.1	+	5	363	c.345C>T	c.(343-345)TTC>TTT	p.F115F		NM_139172	NP_631911	Q8WZ59	TM190_HUMAN	transmembrane protein 190 precursor	115	Cytoplasmic (Potential).					integral to membrane					0	Breast(117;0.191)		BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		TGCCCGGTTTCCTGGCGGGTC	0.706													17	35					0	0	0.004990	0	0
NLRP9	338321	broad.mit.edu	37	19	56223890	56223890	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:56223890C>T	uc002qly.2	-	7	2596	c.2568G>A	c.(2566-2568)GGG>GGA	p.G856G		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	856						cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		TCTTCAGTTTCCCATTGCAAA	0.448													11	41					0	0	0.010729	0	0
NLRP9	338321	broad.mit.edu	37	19	56243946	56243946	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:56243946C>T	uc002qly.2	-	2	1279	c.1251G>A	c.(1249-1251)AGG>AGA	p.R417R		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	417	NACHT.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		ATAACCCATTCCTCCGGAGAT	0.493													30	94					0	0	0.006320	0	0
NLRP8	126205	broad.mit.edu	37	19	56466958	56466958	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:56466958G>A	uc002qmh.2	+	3	1605	c.1534G>A	c.(1534-1536)GAA>AAA	p.E512K	NLRP8_uc010etg.2_Missense_Mutation_p.E512K	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	512	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		GACTTTTCAGGAATTTTTTGC	0.468													44	132					0	0	0.014410	0	0
NLRP5	126206	broad.mit.edu	37	19	56515291	56515291	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:56515291C>T	uc002qmj.2	+	2	272	c.272C>T	c.(271-273)TCG>TTG	p.S91L	NLRP5_uc002qmi.2_Missense_Mutation_p.S91L	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	91	DAPIN.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		TCTTCAGAATCGACCACATGC	0.453													21	37					0	0	0.008871	0	0
NLRP5	126206	broad.mit.edu	37	19	56539825	56539825	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:56539825G>A	uc002qmj.2	+	7	2226	c.2226G>A	c.(2224-2226)GGG>GGA	p.G742G	NLRP5_uc002qmi.2_Silent_p.G723G	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	742	LRR 2.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		ATGTCAAAGGGATCTTCCCAA	0.517													68	164					0	0	0.014410	0	0
NLRP5	126206	broad.mit.edu	37	19	56549442	56549442	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:56549442C>T	uc002qmj.2	+	10	2667	c.2667C>T	c.(2665-2667)ATC>ATT	p.I889I	NLRP5_uc002qmi.2_Silent_p.I870I	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	889	LRR 6.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		TCTCCCAAATCCTTACGACCT	0.537													21	54					0	0	0.012319	0	0
USP29	57663	broad.mit.edu	37	19	57641786	57641786	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:57641786G>A	uc002qny.2	+	4	2099	c.1743G>A	c.(1741-1743)ATG>ATA	p.M581I		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	581					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CACCATCAATGAAGCTGACCT	0.488													17	50					0	0	0.004007	0	0
ZNF549	256051	broad.mit.edu	37	19	58048918	58048918	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:58048918C>T	uc002qpb.1	+	4	795	c.546C>T	c.(544-546)TTC>TTT	p.F182F	ZNF547_uc002qpm.3_Intron|ZNF549_uc010eud.1_Intron|ZNF549_uc002qpa.1_Silent_p.F169F	NM_153263	NP_694995	Q6P9A3	ZN549_HUMAN	zinc finger protein 549	182					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		ACAATCTTTTCCCATGCAAAG	0.483													15	27					0	0	0.003163	0	0
SLC27A5	10998	broad.mit.edu	37	19	59022257	59022257	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr19:59022257C>T	uc002qtc.2	-	2	839	c.729G>A	c.(727-729)CAG>CAA	p.Q243Q		NM_012254	NP_036386	Q9Y2P5	S27A5_HUMAN	solute carrier family 27 (fatty acid	243	Cytoplasmic (Probable).				bile acid and bile salt transport|bile acid biosynthetic process|very long-chain fatty acid metabolic process	endoplasmic reticulum membrane|integral to membrane	ATP binding|cholate-CoA ligase activity|long-chain fatty acid-CoA ligase activity				0		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.181)		TGTTCTCAGCCTGCAGCTTGG	0.637													21	41					0	0	0.010504	0	0
Unknown	0	broad.mit.edu	37	2	905523	905523	+	RNA	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:905523C>T	uc010ewg.2	-	1		c.60G>A			uc010ewh.1_Missense_Mutation_p.M141I					Homo sapiens cDNA FLJ46162 fis, clone TESTI4002520.																		TCTGGTGTTTCATTTCCTCCC	0.607													23	496					0	0	0.018920	0	0
SNTG2	54221	broad.mit.edu	37	2	1241662	1241662	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:1241662G>A	uc002qwq.2	+	10	850	c.722G>A	c.(721-723)TGG>TAG	p.W241*	SNTG2_uc010ewi.2_Nonsense_Mutation_p.W114*	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	241					central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		CTCCCCAGGTGGAATGCGTTC	0.672													3	8					0	0	0.004672	0	0
TPO	7173	broad.mit.edu	37	2	1480864	1480864	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:1480864G>A	uc002qww.2	+	8	917	c.826G>A	c.(826-828)GAG>AAG	p.E276K	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.E276K|TPO_uc002qwr.2_Missense_Mutation_p.E276K|TPO_uc002qwx.2_Missense_Mutation_p.E276K|TPO_uc010yio.1_Intron|TPO_uc010yip.1_Missense_Mutation_p.E276K	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	276	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GCAGCTCCCGGAGGAGGCCCG	0.706													6	25					0	0	0.001984	0	0
GEN1	348654	broad.mit.edu	37	2	17950004	17950004	+	Splice_Site	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:17950004G>A	uc002rct.2	+	6	710	c.637_splice	c.e6-1	p.G213_splice	SMC6_uc010exo.2_Intron|GEN1_uc010yjs.1_Splice_Site_p.G213_splice|GEN1_uc002rcu.2_Splice_Site_p.G213_splice	NM_182625	NP_872431	Q17RS7	GEN_HUMAN	Gen homolog 1, endonuclease						DNA repair	nucleus	DNA binding|endonuclease activity|metal ion binding			breast(5)|kidney(1)|central_nervous_system(1)|skin(1)	8	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CTTTCTGAAAGGGAGTCCCTG	0.214								Homologous_recombination					4	16					0	0	0.014758	0	0
APOB	338	broad.mit.edu	37	2	21228841	21228841	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:21228841C>T	uc002red.2	-	26	11027	c.10899G>A	c.(10897-10899)TGG>TGA	p.W3633*		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3633					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTTCATTTTTCCATCTGATCT	0.483													74	164					0	0	0.014410	0	0
APOB	338	broad.mit.edu	37	2	21230763	21230763	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:21230763C>T	uc002red.2	-	26	9105	c.8977G>A	c.(8977-8979)GAT>AAT	p.D2993N		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2993					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TGCTGGGAATCGACTTGTGAT	0.418													73	173					0	0	0.014410	0	0
UBXN2A	165324	broad.mit.edu	37	2	24199943	24199943	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:24199943G>A	uc010exy.2	+	5	753	c.285G>A	c.(283-285)AAG>AAA	p.K95K	UBXN2A_uc002rem.2_RNA|UBXN2A_uc002ren.2_Silent_p.K95K|UBXN2A_uc010ykj.1_Silent_p.K95K	NM_181713	NP_859064	P68543	UBX2A_HUMAN	UBX domain containing 4	95	SEP.										0						CCATCAAAAAGGGGTGAGTAg	0.209													12	30					0	0	0.010729	0	0
ITSN2	50618	broad.mit.edu	37	2	24426562	24426562	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:24426562T>C	uc002rfe.2	-	40	5285	c.5027A>G	c.(5026-5028)GAG>GGG	p.E1676G	ITSN2_uc002rff.2_Missense_Mutation_p.E1649G	NM_006277	NP_006268	Q9NZM3	ITSN2_HUMAN	intersectin 2 isoform 1	1676					endocytosis|regulation of Rho protein signal transduction	cytoplasm	calcium ion binding|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			kidney(2)|ovary(1)|central_nervous_system(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGTGGGGACCTCATGCAGCAG	0.532													3	49					0	0	0.004672	0	0
OTOF	9381	broad.mit.edu	37	2	26725235	26725235	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:26725235C>T	uc002rhk.2	-	7	770	c.643G>A	c.(643-645)GGA>AGA	p.G215R	OTOF_uc010ylb.1_RNA	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	215	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGATCCAGTCCATCTCCTAGC	0.577													15	29					0	0	0.007413	0	0
TCF23	150921	broad.mit.edu	37	2	27375569	27375569	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:27375569G>A	uc010ylg.1	+	3	479	c.479G>A	c.(478-480)CGA>CAA	p.R160Q		NM_175769	NP_786951	Q7RTU1	TCF23_HUMAN	transcription factor 23	160					cell differentiation|muscle organ development|regulation of transcription, DNA-dependent	nucleus					0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGGCCGATGCGATCTCGTCTC	0.557													15	41					0	0	0.004990	0	0
CAD	790	broad.mit.edu	37	2	27465619	27465619	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:27465619C>T	uc002rji.2	+	41	6516	c.6354C>T	c.(6352-6354)TTC>TTT	p.F2118F	CAD_uc010eyw.2_Silent_p.F2055F	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	2118	ATCase (Aspartate transcarbamylase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	TGCGGGCCTTCGTGGCCTCCC	0.657													17	43					0	0	0.004990	0	0
GTF3C2	2976	broad.mit.edu	37	2	27558792	27558793	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:27558792_27558793GG>AA	uc002rjv.1	-	10	1821_1822	c.1458_1459CC>TT	c.(1456-1461)ACCCCT>ACTTCT	p.P487S	GTF3C2_uc010eyy.1_5'Flank|GTF3C2_uc002rju.1_Missense_Mutation_p.P498S|GTF3C2_uc002rjw.1_Missense_Mutation_p.P487S|GTF3C2_uc010eyz.1_Missense_Mutation_p.P487S|uc002rjy.1_Intron	NM_001521	NP_001512	Q8WUA4	TF3C2_HUMAN	general transcription factor IIIC, polypeptide	487	WD 1.					transcription factor TFIIIC complex				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACCTTCCGAGGGGTGCCTGGAA	0.554													9	29					0	0	0.004672	0	0
C2orf16	84226	broad.mit.edu	37	2	27803944	27803944	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:27803944A>G	uc002rkz.3	+	1	4556	c.4505A>G	c.(4504-4506)AAC>AGC	p.N1502S	ZNF512_uc010ylv.1_5'Flank|ZNF512_uc010ylw.1_5'Flank|ZNF512_uc002rlb.2_5'Flank|ZNF512_uc010ylx.1_5'Flank|ZNF512_uc002rlc.2_5'Flank|ZNF512_uc002rla.2_5'Flank|ZNF512_uc010yly.1_5'Flank|ZNF512_uc010ylz.1_5'Flank	NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1502										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					GAGTCTAAGAACTTGTCCACA	0.483													25	62					0	0	0.005443	0	0
SRD5A2	6716	broad.mit.edu	37	2	31754518	31754518	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:31754518A>G	uc002rnw.1	-	5	628	c.557T>C	c.(556-558)TTT>TCT	p.F186S		NM_000348	NP_000339	P31213	S5A2_HUMAN	3-oxo-5 alpha-steroid 4-dehydrogenase 2	186					androgen biosynthetic process|cell differentiation|cell-cell signaling|male gonad development	endoplasmic reticulum membrane|integral to membrane|microsome	3-oxo-5-alpha-steroid 4-dehydrogenase activity|sterol 5-alpha reductase activity				0	Acute lymphoblastic leukemia(172;0.155)				Azelaic Acid(DB00548)|Dutasteride(DB01126)	AACATACGTAAACAAGCCACC	0.453													6	13					0	0	0.001168	0	0
HEATR5B	54497	broad.mit.edu	37	2	37295975	37295975	+	Silent	SNP	C	A	A	rs143552035		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:37295975C>A	uc002rpp.1	-	8	1122	c.1026G>T	c.(1024-1026)CGG>CGT	p.R342R		NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	342							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				TTTGTGTTGCCCGAGGATGGG	0.493													16	22					2.31682e-05	2.37438e-05	0.003163	1	0
TMEM178	130733	broad.mit.edu	37	2	39931305	39931305	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:39931305C>T	uc002rrt.2	+	2	510	c.485C>T	c.(484-486)ACC>ATC	p.T162I	TMEM178_uc010fam.1_Missense_Mutation_p.T162I	NM_152390	NP_689603	Q8NBL3	TM178_HUMAN	transmembrane protein 178 precursor	162	Extracellular (Potential).					integral to membrane					0		all_hematologic(82;0.248)				TTAACCAAGACCATACAGCAA	0.458													8	32					0	0	0.004482	0	0
PRKCE	5581	broad.mit.edu	37	2	46378243	46378243	+	Missense_Mutation	SNP	G	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:46378243G>C	uc002rut.2	+	13	1992	c.1795G>C	c.(1795-1797)GAG>CAG	p.E599Q		NM_005400	NP_005391	Q02156	KPCE_HUMAN	protein kinase C, epsilon	599	Protein kinase.				activation of phospholipase C activity|induction of apoptosis|intracellular signal transduction|nerve growth factor receptor signaling pathway|platelet activation	cytosol|endoplasmic reticulum|plasma membrane	ATP binding|enzyme activator activity|metal ion binding|signal transducer activity			lung(4)|ovary(3)|kidney(1)|breast(1)|large_intestine(1)	10		all_hematologic(82;0.155)|Acute lymphoblastic leukemia(82;0.209)	LUSC - Lung squamous cell carcinoma(58;0.171)			GCTGATGTACGAGATGATGGC	0.567													7	32					0	0	0.003080	0	0
EPAS1	2034	broad.mit.edu	37	2	46588101	46588101	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:46588101C>T	uc002ruv.2	+	6	1139	c.651C>T	c.(649-651)CCC>CCT	p.P217P		NM_001430	NP_001421	Q99814	EPAS1_HUMAN	endothelial PAS domain protein 1	217					angiogenesis|myoblast cell fate commitment|positive regulation of transcription from RNA polymerase II promoter|response to hypoxia	transcription factor complex	histone acetyltransferase binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription coactivator activity|transcription factor binding			ovary(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	LUSC - Lung squamous cell carcinoma(58;0.151)			ACAAGGAGCCCCTGCTGTCCT	0.567													24	33					0	0	0.018920	0	0
MSH6	2956	broad.mit.edu	37	2	48027726	48027726	+	Missense_Mutation	SNP	G	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:48027726G>T	uc002rwd.3	+	4	2756	c.2604G>T	c.(2602-2604)ATG>ATT	p.M868I	MSH6_uc002rwc.2_Missense_Mutation_p.M868I|MSH6_uc010fbj.2_Missense_Mutation_p.M566I|MSH6_uc010yoi.1_Missense_Mutation_p.M738I|MSH6_uc010yoj.1_Missense_Mutation_p.M566I	NM_000179	NP_000170	P52701	MSH6_HUMAN	mutS homolog 6	868					determination of adult lifespan|DNA damage response, signal transduction resulting in induction of apoptosis|isotype switching|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|response to UV|somatic hypermutation of immunoglobulin genes	MutSalpha complex	ATP binding|DNA-dependent ATPase activity|protein binding			large_intestine(53)|central_nervous_system(28)|endometrium(28)|stomach(22)|haematopoietic_and_lymphoid_tissue(9)|lung(7)|skin(6)|urinary_tract(5)|breast(5)|ovary(3)|thyroid(1)|upper_aerodigestive_tract(1)	168		Acute lymphoblastic leukemia(82;0.0299)|all_hematologic(82;0.0358)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			TCAAAGTAATGTGTAAAATTA	0.373			Mis|N|F|S		colorectal	colorectal|endometrial|ovarian		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				13	30					4.36969e-10	4.53815e-10	0.016723	1	0
NRXN1	9378	broad.mit.edu	37	2	50724508	50724508	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:50724508C>T	uc010fbq.2	-	14	4439	c.2962G>A	c.(2962-2964)GAT>AAT	p.D988N	NRXN1_uc002rxb.3_Missense_Mutation_p.D620N|NRXN1_uc002rxe.3_Missense_Mutation_p.D948N|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			TCATTTCCATCCCCACTGTTA	0.358													10	26					0	0	0.008291	0	0
B3GNT2	10678	broad.mit.edu	37	2	62450312	62450312	+	Silent	SNP	G	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:62450312G>C	uc002sbs.2	+	2	1195	c.957G>C	c.(955-957)CTG>CTC	p.L319L		NM_006577	NP_006568	Q9NY97	B3GN2_HUMAN	UDP-GlcNAc:betaGal	319	Lumenal (Potential).					Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(1)	1	Lung NSC(7;0.031)|all_lung(7;0.0634)		LUSC - Lung squamous cell carcinoma(7;3.55e-06)|Epithelial(17;0.0963)			CCCTGAGGCTGTACCATATCA	0.532													27	57					0	0	0.006320	0	0
EHBP1	23301	broad.mit.edu	37	2	63085637	63085637	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:63085637C>T	uc002sby.2	+	8	1213	c.731C>T	c.(730-732)TCC>TTC	p.S244F	EHBP1_uc010fcp.2_Intron|EHBP1_uc002sbx.2_Intron|EHBP1_uc002sbz.2_Intron|EHBP1_uc002scb.2_Intron	NM_015252	NP_056067	Q8NDI1	EHBP1_HUMAN	EH domain binding protein 1 isoform 1	244						cytoplasm|membrane				ovary(1)|breast(1)	2	Lung NSC(7;0.0951)|all_lung(7;0.169)		LUSC - Lung squamous cell carcinoma(7;7.74e-05)|Epithelial(17;0.189)			TCAGCCAGTTCCTCTGAAGGT	0.408									Hereditary_Prostate_Cancer				11	40					0	0	0.010729	0	0
PELI1	57162	broad.mit.edu	37	2	64323416	64323416	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:64323416C>T	uc002scs.3	-	5	4572	c.533G>A	c.(532-534)GGA>GAA	p.G178E	PELI1_uc002sct.3_Missense_Mutation_p.G178E|PELI1_uc002scr.3_5'UTR	NM_020651	NP_065702	Q96FA3	PELI1_HUMAN	pellino protein	178					innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol				ovary(1)	1						ATCCATCTGTCCATCTGATGT	0.428													9	45					0	0	0.008291	0	0
AFTPH	54812	broad.mit.edu	37	2	64794825	64794825	+	Silent	SNP	A	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:64794825A>C	uc002sdc.2	+	2	2097	c.2065A>C	c.(2065-2067)AGA>CGA	p.R689R	AFTPH_uc002scz.2_Silent_p.R689R|AFTPH_uc002sda.2_Silent_p.R689R|AFTPH_uc002sdb.2_Silent_p.R689R	NM_203437	NP_982261	Q6ULP2	AFTIN_HUMAN	aftiphilin protein isoform a	689					protein transport	AP-1 adaptor complex|cytosol|nucleus	clathrin binding			ovary(2)	2						AATAAAAACGAGAGAGGCCTT	0.368													12	36					0	0	0.004007	0	0
ADD2	119	broad.mit.edu	37	2	70933534	70933534	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:70933534C>T	uc002sgz.2	-	3	472	c.7G>A	c.(7-9)GAA>AAA	p.E3K	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Missense_Mutation_p.E3K|ADD2_uc002sha.2_Missense_Mutation_p.E3K|ADD2_uc002sgx.2_Missense_Mutation_p.E3K|ADD2_uc010fdt.1_Missense_Mutation_p.E3K|ADD2_uc002shc.1_Missense_Mutation_p.E3K|ADD2_uc002shd.1_Missense_Mutation_p.E3K|ADD2_uc010fdu.1_Missense_Mutation_p.E19K	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	3					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						ACCGTCTCTTCGCTCATTTTC	0.617													25	62					0	0	0.006320	0	0
CLEC4F	165530	broad.mit.edu	37	2	71043181	71043181	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:71043181G>A	uc002shf.2	-	4	1409	c.1332C>T	c.(1330-1332)CGC>CGT	p.R444R	CLEC4F_uc010yqv.1_Silent_p.R444R	NM_173535	NP_775806	Q8N1N0	CLC4F_HUMAN	C-type lectin, superfamily member 13	444	Extracellular (Potential).				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(5)	5						GGGTCTTCAGGCGACTCTGCT	0.522													15	45					0	0	0.003163	0	0
ALMS1	7840	broad.mit.edu	37	2	73680811	73680811	+	Missense_Mutation	SNP	C	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:73680811C>A	uc002sje.1	+	10	7271	c.7160C>A	c.(7159-7161)TCT>TAT	p.S2387Y	ALMS1_uc002sjf.1_Missense_Mutation_p.S2343Y|ALMS1_uc002sjg.2_Missense_Mutation_p.S1773Y|ALMS1_uc002sjh.1_Missense_Mutation_p.S1773Y	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	2385					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						GCAGCCAAATCTGTAATGAGG	0.383													8	19					5.18039e-06	5.32564e-06	0.003080	1	0
SLC4A5	57835	broad.mit.edu	37	2	74460589	74460589	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:74460589C>T	uc002sko.1	-	18	2537	c.2535G>A	c.(2533-2535)CTG>CTA	p.L845L	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Silent_p.L845L|SLC4A5_uc010ffc.1_Silent_p.L845L|SLC4A5_uc002skp.1_Silent_p.L743L|SLC4A5_uc002sks.1_Silent_p.L807L	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	845	Helical; (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						CCATGAAGATCAGGATGGTCA	0.572													16	36					0	0	0.004990	0	0
MOGS	7841	broad.mit.edu	37	2	74690339	74690339	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:74690339C>T	uc010ffj.2	-	3	917	c.754G>A	c.(754-756)GAT>AAT	p.D252N	MOGS_uc010ffh.2_5'UTR|MOGS_uc010yrt.1_Missense_Mutation_p.D133N|MOGS_uc010ffi.2_Missense_Mutation_p.D146N|MOGS_uc010yru.1_3'UTR	NM_006302	NP_006293	Q13724	MOGS_HUMAN	mannosyl-oligosaccharide glucosidase isoform 1	252	Lumenal (Potential).				oligosaccharide metabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane|membrane fraction	mannosyl-oligosaccharide glucosidase activity				0						GGGGCTGTATCCCCTGGACTG	0.537													37	112					0	0	0.006230	0	0
TTC31	64427	broad.mit.edu	37	2	74717474	74717474	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:74717474C>T	uc002slt.2	+	4	359	c.336C>T	c.(334-336)TCC>TCT	p.S112S	TTC31_uc002sls.2_Silent_p.S41S|TTC31_uc010yrv.1_5'UTR|TTC31_uc002slu.2_5'UTR	NM_022492	NP_071937	Q49AM3	TTC31_HUMAN	tetratricopeptide repeat domain 31	112							binding				0						TCCGCAAGTCCTTCCTGTATC	0.602													16	47					0	0	0.004007	0	0
REG1A	5967	broad.mit.edu	37	2	79349984	79349984	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:79349984G>A	uc002snz.2	+	5	442	c.339G>A	c.(337-339)TGG>TGA	p.W113*	REG1A_uc010ysd.1_Nonsense_Mutation_p.W113*	NM_002909	NP_002900	P05451	REG1A_HUMAN	regenerating islet-derived 1 alpha precursor	113	C-type lectin.				positive regulation of cell proliferation	extracellular region	growth factor activity|sugar binding				0						GCTGGCACTGGAGCAGTGGGT	0.557													14	47					0	0	0.006122	0	0
C2orf89	129293	broad.mit.edu	37	2	85097750	85097750	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:85097750G>A	uc010ysl.1	-	2	357	c.268C>T	c.(268-270)CTC>TTC	p.L90F	C2orf89_uc002sou.3_Missense_Mutation_p.L90F|C2orf89_uc010fgc.1_Missense_Mutation_p.L90F	NM_001080824	NP_001074293	Q86V40	CB089_HUMAN	hypothetical protein LOC129293 precursor	90	Extracellular (Potential).					integral to membrane				ovary(1)	1						GGGTCTGTGAGATCCAACTCA	0.547													10	13					0	0	0.006214	0	0
SMYD1	150572	broad.mit.edu	37	2	88409921	88409921	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:88409921G>A	uc002ssr.2	+	10	1365	c.1363G>A	c.(1363-1365)GAA>AAA	p.E455K	SMYD1_uc002ssq.1_Intron|SMYD1_uc002sss.2_Missense_Mutation_p.E151K	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	455					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						CCGCCAGAACGAATTCATGTA	0.567													5	12					0	0	0.014758	0	0
Unknown	0	broad.mit.edu	37	2	89309711	89309711	+	RNA	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:89309711C>T	uc010ytr.1	-	74		c.6636G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GATGGTGACTCTGTCTCCTAC	0.478													43	128					0	0	0.011902	0	0
CIAO1	9391	broad.mit.edu	37	2	96934294	96934294	+	Missense_Mutation	SNP	G	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:96934294G>C	uc002svs.2	+	5	794	c.589G>C	c.(589-591)GTG>CTG	p.V197L	TMEM127_uc002svq.2_5'Flank|TMEM127_uc002svr.2_5'Flank	NM_004804	NP_004795	O76071	CIAO1_HUMAN	WD repeat domain 39	197	WD 5.				chromosome segregation|iron-sulfur cluster assembly|positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter	MMXD complex	protein binding				0						TGAATCCACTGTGTGGAGCTT	0.552													15	42					0	0	0.003163	0	0
SNRNP200	23020	broad.mit.edu	37	2	96955567	96955567	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:96955567G>A	uc002svu.2	-	21	2996	c.2910C>T	c.(2908-2910)GTC>GTT	p.V970V	SNRNP200_uc002svw.1_Silent_p.V42V	NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	970						catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						TGTCGTACTTGACCAGATTGT	0.512													26	83					0	0	0.007291	0	0
SLC9A2	6549	broad.mit.edu	37	2	103324924	103324924	+	Silent	SNP	C	T	T	rs112482803		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:103324924C>T	uc002tca.2	+	12	2557	c.2415C>T	c.(2413-2415)GCC>GCT	p.A805A		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	805	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						GCCGGAAAGCCCGATTTGGGA	0.562													39	68					0	0	0.007835	0	0
GPR45	11250	broad.mit.edu	37	2	105859055	105859056	+	Missense_Mutation	DNP	GG	AA	AA	rs143245552	byFrequency	TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:105859055_105859056GG>AA	uc002tco.1	+	1	856_857	c.740_741GG>AA	c.(739-741)CGG>CAA	p.R247Q		NM_007227	NP_009158	Q9Y5Y3	GPR45_HUMAN	G protein-coupled receptor 45	247	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3						GCGGGCCTGCGGCGCCTGCAGC	0.644													42	84					0	0	0.004672	0	0
SULT1C4	27233	broad.mit.edu	37	2	108999630	108999630	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:108999630C>T	uc002tea.1	+	4	848	c.475C>T	c.(475-477)CCA>TCA	p.P159S	SULT1C4_uc010ywr.1_RNA|SULT1C4_uc002teb.1_Intron	NM_006588	NP_006579	O75897	ST1C4_HUMAN	sulfotransferase family, cytosolic, 1C, member	159					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol	sulfotransferase activity				0						TCTTCCTGCTCCAGGAACATG	0.418													28	64					0	0	0.005443	0	0
IL1F7	27178	broad.mit.edu	37	2	113676137	113676137	+	Splice_Site	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:113676137G>A	uc002tij.2	+	5	451	c.409_splice	c.e5-1	p.K137_splice	IL1F7_uc002tik.2_Splice_Site_p.K116_splice|IL1F7_uc002til.2_Splice_Site_p.K97_splice|IL1F7_uc002tim.2_Splice_Site_p.K76_splice|IL1F7_uc002tin.2_Splice_Site_p.K111_splice	NM_014439	NP_055254	Q9NZH6	IL37_HUMAN	interleukin 1 family, member 7 isoform 1						immune response	cytosol|extracellular space|nucleus	cytokine activity|interleukin-1 receptor antagonist activity|interleukin-1 receptor binding				0						TTACCTCACAGAAGGAGAAAC	0.512													16	48					0	0	0.003163	0	0
STEAP3	55240	broad.mit.edu	37	2	120005431	120005431	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:120005431C>T	uc002tlp.2	+	4	826	c.669C>T	c.(667-669)TTC>TTT	p.F223F	STEAP3_uc002tlq.2_Silent_p.F233F|STEAP3_uc002tlr.2_Silent_p.F223F|STEAP3_uc010fle.2_Silent_p.F223F	NM_018234	NP_060704	Q658P3	STEA3_HUMAN	dudulin 2 isoform b	223	Helical; (Potential).				apoptosis|cell cycle|cellular iron ion homeostasis|protein secretion|transferrin transport|transmembrane transport	endosome membrane|integral to membrane|multivesicular body	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			central_nervous_system(2)|skin(1)	3						TGGGGCTCTTCGTCTGCTTCT	0.627													14	47					0	0	0.003163	0	0
SCTR	6344	broad.mit.edu	37	2	120206320	120206320	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:120206320G>A	uc002tma.2	-	10	1184	c.958C>T	c.(958-960)CTG>TTG	p.L320L	SCTR_uc002tlz.2_Silent_p.L142L	NM_002980	NP_002971	P47872	SCTR_HUMAN	secretin receptor precursor	320	Cytoplasmic (Potential).				digestion|excretion	integral to plasma membrane	secretin receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3					Secretin(DB00021)	TTTCTCATCAGGATTCTTAGA	0.398													6	19					0	0	0.001168	0	0
POTEF	728378	broad.mit.edu	37	2	130877802	130877802	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:130877802T>C	uc010fmh.2	-	3	687	c.287A>G	c.(286-288)AAC>AGC	p.N96S		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	96						cell cortex	ATP binding			skin(3)|ovary(2)	5						GCCCATCTTGTTCCTGAGTGT	0.607													4	333					0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	2	133070502	133070502	+	RNA	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:133070502G>A	uc002ttk.1	+	3		c.156G>A								Homo sapiens cDNA FLJ37280 fis, clone BRAMY2012881.																		GGCAGTATTGGATAAAGCCCA	0.458													5	70					0	0	0.008291	0	0
THSD7B	80731	broad.mit.edu	37	2	137988722	137988722	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:137988722C>T	uc002tva.1	+	7	1739	c.1739C>T	c.(1738-1740)TCA>TTA	p.S580L	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.S470L	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		ACGGAGTGGTCATCCTGTTCC	0.517													13	20					0	0	0.020292	0	0
SPOPL	339745	broad.mit.edu	37	2	139308526	139308526	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:139308526C>T	uc002tvh.2	+	4	654	c.254C>T	c.(253-255)TCC>TTC	p.S85F		NM_001001664	NP_001001664	Q6IQ16	SPOPL_HUMAN	speckle-type POZ protein-like	85	MATH.					nucleus				skin(2)|breast(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0296)		GACTACTTGTCCTTATATTTG	0.358													14	49					0	0	0.020292	0	0
LRP1B	53353	broad.mit.edu	37	2	141245207	141245207	+	Nonsense_Mutation	SNP	A	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:141245207A>T	uc002tvj.1	-	58	10194	c.9222T>A	c.(9220-9222)TGT>TGA	p.C3074*		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3074	Extracellular (Potential).|LDL-receptor class B 28.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTCCATTTAAACACATTCTAT	0.299										TSP Lung(27;0.18)			8	28					0	0	0.004482	0	0
TNFAIP6	7130	broad.mit.edu	37	2	152226710	152226710	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:152226710G>A	uc002txk.2	+	4	647	c.571G>A	c.(571-573)GAT>AAT	p.D191N		NM_007115	NP_009046	P98066	TSG6_HUMAN	tumor necrosis factor, alpha-induced protein 6	191	CUB.				cell adhesion|cell-cell signaling|inflammatory response|signal transduction		hyaluronic acid binding				0				BRCA - Breast invasive adenocarcinoma(221;0.131)		TTGCTTGGCTGATTATGTTGA	0.408													20	84					0	0	0.018920	0	0
ACVR1C	130399	broad.mit.edu	37	2	158412607	158412607	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:158412607G>A	uc002tzk.3	-	3	785	c.542C>T	c.(541-543)TCT>TTT	p.S181F	ACVR1C_uc002tzl.3_Intron|ACVR1C_uc010fof.2_Intron|ACVR1C_uc010foe.2_Missense_Mutation_p.S131F	NM_145259	NP_660302	Q8NER5	ACV1C_HUMAN	activin A receptor, type IC isoform 1	181	Cytoplasmic (Potential).|GS.				apoptosis|cell differentiation|regulation of apoptosis	activin receptor complex	activin receptor activity, type I|ATP binding|transforming growth factor beta receptor activity			lung(3)|ovary(2)|skin(2)	7						TAACATACCAGAGCCAGATCC	0.338													5	21					0	0	0.001168	0	0
SCN3A	6328	broad.mit.edu	37	2	165984368	165984368	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:165984368C>T	uc002ucx.2	-	18	3658	c.3166G>A	c.(3166-3168)GAA>AAA	p.E1056K	SCN3A_uc002ucy.2_Missense_Mutation_p.E1007K|SCN3A_uc002ucz.2_Missense_Mutation_p.E1007K|SCN3A_uc002uda.1_Missense_Mutation_p.E876K|SCN3A_uc002udb.1_Missense_Mutation_p.E876K	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1056						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TTGCTTATTTCAATTCCAGTA	0.373													13	31					0	0	0.020292	0	0
SCN3A	6328	broad.mit.edu	37	2	165994396	165994396	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:165994396C>T	uc002ucx.2	-	15	2876	c.2384G>A	c.(2383-2385)GGA>GAA	p.G795E	SCN3A_uc002ucy.2_Missense_Mutation_p.G746E|SCN3A_uc002ucz.2_Missense_Mutation_p.G746E|SCN3A_uc002uda.1_Missense_Mutation_p.G615E|SCN3A_uc002udb.1_Missense_Mutation_p.G615E	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	795	Helical; Name=S2 of repeat II; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TACCAGGTTTCCTACAGTCAA	0.398													9	9					0	0	0.006214	0	0
SCN1A	6323	broad.mit.edu	37	2	166870329	166870329	+	Silent	SNP	C	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:166870329C>A	uc010zcz.1	-	18	3615	c.3597G>T	c.(3595-3597)ACG>ACT	p.T1199T	SCN1A_uc002udo.3_Silent_p.T1079T|SCN1A_uc010fpk.2_Silent_p.T1051T	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1210	III.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TTCGGAAACACGTCCTTCTCA	0.398													4	20					0.00909568	0.00928561	0.009096	1	0
XIRP2	129446	broad.mit.edu	37	2	168099883	168099883	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:168099883A>T	uc002udx.2	+	8	1999	c.1981A>T	c.(1981-1983)AGG>TGG	p.R661W	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.R486W|XIRP2_uc010fpq.2_Missense_Mutation_p.R439W|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	486	Xin 4.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GTTTGAAACAAGGCCATTGGA	0.438													12	26					0	0	0.010729	0	0
B3GALT1	8708	broad.mit.edu	37	2	168726477	168726477	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:168726477G>A	uc002udz.1	+	2	1279	c.928G>A	c.(928-930)GAA>AAA	p.E310K		NM_020981	NP_066191	Q9Y5Z6	B3GT1_HUMAN	UDP-Gal:betaGlcNAc beta	310	Lumenal (Potential).				lipid glycosylation|protein glycosylation	Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4						CTCTCCAGAAGAAATGCACAG	0.378													6	36					0	0	0.001168	0	0
PPIG	9360	broad.mit.edu	37	2	170470973	170470973	+	Splice_Site	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:170470973G>A	uc002uez.2	+	8	598	c.378_splice	c.e8-1	p.I126_splice	PPIG_uc010fpx.2_Splice_Site_p.I111_splice|PPIG_uc010fpy.2_Splice_Site_p.I122_splice|PPIG_uc002ufa.2_Splice_Site_p.I126_splice|PPIG_uc002ufb.2_Splice_Site_p.I126_splice|PPIG_uc002ufc.1_Splice_Site_p.I126_splice|PPIG_uc002ufd.2_Splice_Site_p.I126_splice	NM_004792	NP_004783	Q13427	PPIG_HUMAN	peptidylprolyl isomerase G						protein folding|RNA splicing	nuclear matrix|nuclear speck	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|central_nervous_system(1)	3					L-Proline(DB00172)	ATTTCCAAAAGAACAACGAAA	0.244													20	45					0	0	0.018920	0	0
ATF2	1386	broad.mit.edu	37	2	175957886	175957886	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:175957886C>T	uc002ujl.2	-	12	1350	c.1088G>A	c.(1087-1089)AGA>AAA	p.R363K	ATF2_uc010fqv.2_Missense_Mutation_p.R314K|ATF2_uc002ujv.2_Missense_Mutation_p.R110K|ATF2_uc002ujm.2_Missense_Mutation_p.R305K|ATF2_uc002ujn.2_RNA|ATF2_uc002ujo.2_Intron|ATF2_uc002ujp.2_RNA|ATF2_uc002ujq.2_Missense_Mutation_p.R363K|ATF2_uc002ujr.2_RNA|ATF2_uc010fqu.2_Missense_Mutation_p.R345K|ATF2_uc002ujs.2_Missense_Mutation_p.R305K|ATF2_uc002ujt.2_RNA|ATF2_uc002uju.2_RNA|ATF2_uc002ujw.1_Missense_Mutation_p.R305K|ATF2_uc002ujx.1_RNA	NM_001880	NP_001871	P15336	ATF2_HUMAN	activating transcription factor 2	363	Basic motif.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	nucleoplasm	protein dimerization activity|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(1)|breast(1)|pancreas(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.125)			AGCTGCTGCTCTATTTCGCTC	0.438													12	40					0	0	0.020292	0	0
EVX2	344191	broad.mit.edu	37	2	176948373	176948373	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:176948373C>T	uc010zeu.1	-	1	318	c.132G>A	c.(130-132)CAG>CAA	p.Q44Q		NM_001080458	NP_001073927	Q03828	EVX2_HUMAN	even-skipped homeobox 2	44						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	READ - Rectum adenocarcinoma(9;0.0678)|Colorectal(32;0.115)		GAGCCGGGTGCTGCGAATTTT	0.602													14	60					0	0	0.016723	0	0
OSBPL6	114880	broad.mit.edu	37	2	179238741	179238741	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:179238741C>T	uc002ulx.2	+	15	1898	c.1520C>T	c.(1519-1521)TCG>TTG	p.S507L	OSBPL6_uc002ulw.2_Missense_Mutation_p.S440L|OSBPL6_uc002uly.2_Missense_Mutation_p.S532L|OSBPL6_uc010zfe.1_Missense_Mutation_p.S476L|OSBPL6_uc002ulz.2_Missense_Mutation_p.S471L|OSBPL6_uc002uma.2_Missense_Mutation_p.S511L	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	507					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			TCTGCAAGTTCGTCAGAGAAT	0.458													23	77					0	0	0.004656	0	0
TTN	7273	broad.mit.edu	37	2	179433986	179433986	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:179433986G>A	uc010zfg.1	-	275	69393	c.69169C>T	c.(69169-69171)CCT>TCT	p.P23057S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P16752S|TTN_uc010zfi.1_Missense_Mutation_p.P16685S|TTN_uc010zfj.1_Missense_Mutation_p.P16560S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23984							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCAACAAAGGAGGTTCCCAT	0.403													28	91					0	0	0.006320	0	0
TTN	7273	broad.mit.edu	37	2	179545055	179545055	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:179545055G>A	uc010zfg.1	-	136	29836	c.29612C>T	c.(29611-29613)CCC>CTC	p.P9871L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P6532L|TTN_uc010fre.1_Intron|TTN_uc002una.1_5'Flank|TTN_uc010frf.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10798							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGGCTTCATGGGCACTTGAAA	0.393													23	60					0	0	0.005443	0	0
TTN	7273	broad.mit.edu	37	2	179586805	179586805	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:179586805C>T	uc010zfg.1	-	75	19077	c.18853G>A	c.(18853-18855)GGA>AGA	p.G6285R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G2946R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7212							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCACTTTCTCCAGCAATAACA	0.403													13	43					0	0	0.003163	0	0
TTN	7273	broad.mit.edu	37	2	179604872	179604872	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:179604872G>A	uc010zfh.1	-	46	12799	c.12575C>T	c.(12574-12576)CCC>CTC	p.P4192L	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.P4125L|TTN_uc010zfj.1_Missense_Mutation_p.P4000L|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	4119							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATTGCCACGGGCTCTCTTTT	0.448													5	17					0	0	0.014758	0	0
TTN	7273	broad.mit.edu	37	2	179612157	179612157	+	Silent	SNP	T	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:179612157T>G	uc002unb.2	-	46	15194	c.14970A>C	c.(14968-14970)CCA>CCC	p.P4990P	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGATGATGGTGGGGTATAAA	0.378													3	10					0	0	0.004672	0	0
TTN	7273	broad.mit.edu	37	2	179612692	179612692	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:179612692T>C	uc002unb.2	-	46	14659	c.14435A>G	c.(14434-14436)CAC>CGC	p.H4812R	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCACCTCTGTGGTCTTCCAA	0.478													4	14					0	0	0.009096	0	0
TTN	7273	broad.mit.edu	37	2	179650858	179650858	+	Missense_Mutation	SNP	C	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:179650858C>G	uc010zfg.1	-	14	2311	c.2087G>C	c.(2086-2088)GGA>GCA	p.G696A	TTN_uc010zfh.1_Missense_Mutation_p.G650A|TTN_uc010zfi.1_Missense_Mutation_p.G650A|TTN_uc010zfj.1_Missense_Mutation_p.G650A|TTN_uc002unb.2_Missense_Mutation_p.G696A|TTN_uc010frg.1_Missense_Mutation_p.G278A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	696							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGCCTTTTTTCCAACGTCCAC	0.507													3	23					0	0	0.004672	0	0
TTN	7273	broad.mit.edu	37	2	179664595	179664595	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:179664595G>A	uc002und.2	-	5	851	c.626C>T	c.(625-627)TCG>TTG	p.S209L	TTN_uc010zfg.1_Missense_Mutation_p.S209L|TTN_uc010zfh.1_Missense_Mutation_p.S209L|TTN_uc010zfi.1_Missense_Mutation_p.S209L|TTN_uc010zfj.1_Missense_Mutation_p.S209L|TTN_uc002unb.2_Missense_Mutation_p.S209L			Q8WZ42	TITIN_HUMAN	Homo sapiens cDNA FLJ32040 fis, clone NTONG2000858, highly similar to H.sapiens mRNA for titin protein.	209							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGAGCAGTCGAAACAATTGT	0.418													20	22					0	0	0.021523	0	0
DNAJC10	54431	broad.mit.edu	37	2	183605028	183605028	+	Silent	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:183605028T>C	uc002uow.1	+	12	1405	c.990T>C	c.(988-990)TTT>TTC	p.F330F	DNAJC10_uc002uox.1_RNA|DNAJC10_uc002uoy.1_RNA|DNAJC10_uc002uoz.1_Silent_p.F284F|DNAJC10_uc010fro.1_RNA	NM_018981	NP_061854	Q8IXB1	DJC10_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 10	330					apoptosis in response to endoplasmic reticulum stress|cell redox homeostasis|ER-associated protein catabolic process|glycerol ether metabolic process|negative regulation of protein phosphorylation|protein folding|response to endoplasmic reticulum stress	endoplasmic reticulum chaperone complex|endoplasmic reticulum lumen|extracellular region	ATPase activator activity|ATPase binding|chaperone binding|electron carrier activity|heat shock protein binding|misfolded protein binding|protein disulfide oxidoreductase activity|unfolded protein binding			ovary(1)|large_intestine(1)|breast(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			TTTTCTAGTTTCTCAACTCAT	0.249													8	21					0	0	0.003080	0	0
ZNF804A	91752	broad.mit.edu	37	2	185801540	185801540	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:185801540C>T	uc002uph.2	+	4	2011	c.1417C>T	c.(1417-1419)CTA>TTA	p.L473L		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	473						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						AAATAATAATCTAGATAAAAA	0.348													6	27					0	0	0.001168	0	0
TFPI	7035	broad.mit.edu	37	2	188331670	188331670	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:188331670T>C	uc002upx.2	-	8	941	c.908A>G	c.(907-909)AAT>AGT	p.N303S	TFPI_uc002upy.2_Missense_Mutation_p.N303S|TFPI_uc002upz.2_Missense_Mutation_p.N299S	NM_006287	NP_006278	P10646	TFPI1_HUMAN	tissue factor pathway inhibitor isoform a	303					blood coagulation, extrinsic pathway	extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0554)		Coagulation factor VIIa(DB00036)	AATTCACATATTTTTAACAAA	0.239													3	10					0	0	0.004672	0	0
COL3A1	1281	broad.mit.edu	37	2	189854859	189854859	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:189854859G>A	uc002uqj.1	+	9	845	c.728G>A	c.(727-729)GGA>GAA	p.G243E	COL3A1_uc010frw.1_5'Flank	NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	243	Triple-helical region.		G -> V (in EDS4).		axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding	p.G243E(1)		central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GGAGAGCGAGGATTGCCTGGA	0.368													6	6					0	0	0.001984	0	0
DNAH7	56171	broad.mit.edu	37	2	196681594	196681594	+	Silent	SNP	A	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:196681594A>C	uc002utj.3	-	51	9620	c.9519T>G	c.(9517-9519)TCT>TCG	p.S3173S		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3173	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CCTTGGAGGAAGATAATATCT	0.393													21	45					0	0	0.016522	0	0
DNAH7	56171	broad.mit.edu	37	2	196722274	196722274	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:196722274C>T	uc002utj.3	-	44	8342	c.8241G>A	c.(8239-8241)AGG>AGA	p.R2747R		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2747	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ACTGCAGAAACCTCATGTCAC	0.383													6	21					0	0	0.001168	0	0
MOBKL3	25843	broad.mit.edu	37	2	198415074	198415074	+	Silent	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:198415074T>C	uc002uun.3	+	7	550	c.510T>C	c.(508-510)GCT>GCC	p.A170A	MOBKL3_uc002uum.3_Silent_p.A138A|MOBKL3_uc010fsn.2_Silent_p.A149A|MOBKL3_uc010fso.2_Silent_p.A71A|MOBKL3_uc010zgz.1_Silent_p.A71A	NM_015387	NP_056202	Q9Y3A3	MOBL3_HUMAN	Mps One Binder kinase activator-like 3 isoform	170					transport	Golgi cisterna membrane|perinuclear region of cytoplasm	metal ion binding|protein binding				0			Epithelial(96;0.225)			TTTCACATGCTTATTTTCATC	0.303													10	15					0	0	0.006214	0	0
CYP20A1	57404	broad.mit.edu	37	2	204116694	204116694	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:204116694C>T	uc002uzv.3	+	4	916	c.294C>T	c.(292-294)GAC>GAT	p.D98D	CYP20A1_uc002uzx.3_5'UTR|CYP20A1_uc010zif.1_Silent_p.D98D|CYP20A1_uc002uzy.3_5'UTR|CYP20A1_uc002uzw.3_RNA	NM_177538	NP_803882	Q6UW02	CP20A_HUMAN	cytochrome P450, family 20, subfamily A,	98						integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0						TTTCAGCGGACCCTTTTGAAA	0.363													7	35					0	0	0.003080	0	0
STK36	27148	broad.mit.edu	37	2	219553455	219553455	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:219553455C>T	uc002viu.2	+	12	1682	c.1416C>T	c.(1414-1416)ATC>ATT	p.I472I	STK36_uc002viv.2_Silent_p.I472I	NM_015690	NP_056505	Q9NRP7	STK36_HUMAN	serine/threonine kinase 36	472					cilium assembly|positive regulation of hh target transcription factor activity|positive regulation of smoothened signaling pathway|post-embryonic development	aggresome|cytoplasm|focal adhesion|intermediate filament cytoskeleton|nucleus	ATP binding|protein serine/threonine kinase activity|transcription factor binding			ovary(4)|stomach(2)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	11		Renal(207;0.0915)		Epithelial(149;9.65e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00984)		CTTCCCACATCCTGCCTGCAT	0.532													37	131					0	0	0.010771	0	0
IHH	3549	broad.mit.edu	37	2	219920370	219920370	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:219920370G>A	uc002vjo.1	-	3	795	c.795C>T	c.(793-795)CCC>CCT	p.P265P		NM_002181	NP_002172	Q14623	IHH_HUMAN	Indian hedgehog homolog precursor	265					cell-cell signaling|intein-mediated protein splicing|proteolysis	extracellular space|plasma membrane	cholesterol binding|patched binding|peptidase activity			breast(1)	1		Renal(207;0.0915)		Epithelial(149;1.13e-06)|all cancers(144;0.000188)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGCGGCGTGGGGGGTCCTGAG	0.647													12	22					0	0	0.013537	0	0
PTPRN	5798	broad.mit.edu	37	2	220161981	220161981	+	Missense_Mutation	SNP	C	T	T	rs142270672		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:220161981C>T	uc002vkz.2	-	14	2151	c.2062G>A	c.(2062-2064)GAC>AAC	p.D688N	PTPRN_uc010zlc.1_Missense_Mutation_p.D598N|PTPRN_uc002vla.2_Missense_Mutation_p.D659N	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	688	Cytoplasmic (Potential).				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity	p.D688N(1)		ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		GTGGAGATGTCCATGTTGGCT	0.657													18	41					0	0	0.010504	0	0
DNPEP	23549	broad.mit.edu	37	2	220239598	220239598	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:220239598G>A	uc010zlg.1	-	14	1492	c.1410C>T	c.(1408-1410)CTC>CTT	p.L470L	DNPEP_uc010zlf.1_RNA|DNPEP_uc002vle.2_Silent_p.L462L|DNPEP_uc002vlf.1_Silent_p.L448L|DNPEP_uc002vlh.2_Silent_p.L409L|DNPEP_uc002vli.1_Silent_p.L409L	NM_012100	NP_036232	Q9ULA0	DNPEP_HUMAN	aspartyl aminopeptidase	452					peptide metabolic process|proteolysis	cytoplasm	aminopeptidase activity|metallopeptidase activity|protein binding|zinc ion binding				0		Renal(207;0.0474)		Epithelial(149;1.09e-06)|all cancers(144;0.000179)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)	L-Glutamic Acid(DB00142)	TGAGGGTCTGGAGGACTCCTG	0.612													9	33					0	0	0.004482	0	0
ACSL3	2181	broad.mit.edu	37	2	223806250	223806250	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:223806250C>T	uc002vni.2	+	17	2492	c.2041C>T	c.(2041-2043)CGT>TGT	p.R681C	ACSL3_uc002vnj.2_Missense_Mutation_p.R681C|ACSL3_uc002vnk.2_5'Flank	NM_004457	NP_004448	O95573	ACSL3_HUMAN	acyl-CoA synthetase long-chain family member 3	681	Cytoplasmic (Potential).				long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|fatty-acyl-CoA synthase activity|long-chain fatty acid-CoA ligase activity|protein binding			ovary(2)	2		Renal(207;0.0183)		Epithelial(121;1.28e-10)|all cancers(144;8.06e-08)|Lung(261;0.00834)|LUSC - Lung squamous cell carcinoma(224;0.00864)	Icosapent(DB00159)	AGTAAAAATTCGTTTGAGTCC	0.378			T	ETV1	prostate								8	12					0	0	0.004482	0	0
RHBDD1	84236	broad.mit.edu	37	2	227860179	227860179	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:227860179T>C	uc002voi.2	+	7	1010	c.889T>C	c.(889-891)TTT>CTT	p.F297L	RHBDD1_uc010fxc.2_3'UTR|RHBDD1_uc002voj.2_Missense_Mutation_p.F128L	NM_032276	NP_115652	Q8TEB9	RHBD1_HUMAN	rhomboid domain containing 1	297						integral to membrane	serine-type endopeptidase activity			ovary(1)	1		Renal(207;0.023)|all_lung(227;0.13)|Esophageal squamous(248;0.23)|all_hematologic(139;0.248)		Epithelial(121;1.47e-11)|all cancers(144;1.52e-08)|Lung(261;0.0128)|LUSC - Lung squamous cell carcinoma(224;0.0175)		ACCCTACGGGTTTCATCTCTC	0.458													8	19					0	0	0.004482	0	0
COL4A4	1286	broad.mit.edu	37	2	227872752	227872752	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:227872752G>A	uc010zlt.1	-	46	5445	c.4791C>T	c.(4789-4791)ATC>ATT	p.I1597I		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1597	Collagen IV NC1.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		ATGAATACCCGATCCAGAGGC	0.612													11	17					0	0	0.016723	0	0
COL4A4	1286	broad.mit.edu	37	2	227892641	227892641	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:227892641C>T	uc010zlt.1	-	42	4712	c.4058G>A	c.(4057-4059)AGA>AAA	p.R1353K		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1353	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		GGGCCCTTTTCTCCCTGGAGG	0.458													8	30					0	0	0.003080	0	0
COL4A3	1285	broad.mit.edu	37	2	228137729	228137729	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:228137729G>A	uc002vom.1	+	26	1985	c.1823G>A	c.(1822-1824)GGA>GAA	p.G608E	COL4A3_uc002von.1_Missense_Mutation_p.G608E|COL4A3_uc002voo.1_Missense_Mutation_p.G608E|COL4A3_uc002vop.1_Missense_Mutation_p.G608E|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	608	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GGGTCCCCAGGACCTGCAGGA	0.617													19	40					0	0	0.007413	0	0
SPHKAP	80309	broad.mit.edu	37	2	228881744	228881744	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:228881744G>A	uc002vpq.2	-	7	3873	c.3826C>T	c.(3826-3828)CCG>TCG	p.P1276S	SPHKAP_uc002vpp.2_Missense_Mutation_p.P1276S|SPHKAP_uc010zlx.1_Missense_Mutation_p.P1276S	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1276						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CTACTGACCGGCTGCACGCTT	0.507													19	49					0	0	0.012319	0	0
ALPP	250	broad.mit.edu	37	2	233245988	233245988	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:233245988G>A	uc002vsq.2	+	10	1385	c.1220G>A	c.(1219-1221)AGG>AAG	p.R407K	ALPP_uc002vsr.2_RNA	NM_001632	NP_001623	P05187	PPB1_HUMAN	placental alkaline phosphatase preproprotein	407						anchored to membrane|cell surface|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)		GCCCGGGACAGGAAGGCCTAC	0.532													11	37					0	0	0.005443	0	0
UGT1A6	54578	broad.mit.edu	37	2	234602064	234602064	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:234602064C>T	uc002vuv.3	+	1	553	c.414C>T	c.(412-414)TTC>TTT	p.F138F	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Silent_p.F138F	NM_001072	NP_001063	P19224	UD16_HUMAN	UDP glycosyltransferase 1 family, polypeptide A6	138					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity				0		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;5.86e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000384)|Lung(119;0.00306)|LUSC - Lung squamous cell carcinoma(224;0.00702)		CCCTGAACTTCTTTAAGGAGA	0.488													14	52					0	0	0.003163	0	0
UGT1A4	54657	broad.mit.edu	37	2	234627728	234627728	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:234627728G>A	uc002vux.2	+	1	291	c.262G>A	c.(262-264)GAA>AAA	p.E88K	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Missense_Mutation_p.E88K	NM_007120	NP_009051	P22310	UD14_HUMAN	UDP glycosyltransferase 1 family, polypeptide A4	88					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;3.49e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000504)|Lung(119;0.0026)|LUSC - Lung squamous cell carcinoma(224;0.00624)	Imipramine(DB00458)|Lamotrigine(DB00555)|Paricalcitol(DB00910)|Trifluoperazine(DB00831)	GACCCAGAAGGAATTTGATCG	0.453													25	34					0	0	0.018920	0	0
UGT1A5	54579	broad.mit.edu	37	2	234676526	234676526	+	Missense_Mutation	SNP	C	T	T	rs144978321		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:234676526C>T	uc002vuw.2	+	3	1031	c.1031C>T	c.(1030-1032)TCG>TTG	p.S344L	UGT1A8_uc010zmv.1_Missense_Mutation_p.S340L|UGT1A8_uc002vup.2_Missense_Mutation_p.S340L|UGT1A10_uc002vuq.3_Missense_Mutation_p.S340L|UGT1A10_uc002vur.2_Missense_Mutation_p.S340L|UGT1A9_uc010zmw.1_Missense_Mutation_p.S340L|UGT1A9_uc002vus.2_Missense_Mutation_p.S340L|UGT1A7_uc010zmx.1_Missense_Mutation_p.S340L|UGT1A7_uc002vut.2_Missense_Mutation_p.S340L|UGT1A6_uc002vuu.2_Missense_Mutation_p.S75L|UGT1A6_uc010zmy.1_Missense_Mutation_p.S342L|UGT1A6_uc002vuv.3_Missense_Mutation_p.S342L|UGT1A5_uc010zmz.1_Missense_Mutation_p.S344L|UGT1A4_uc010zna.1_Missense_Mutation_p.S344L|UGT1A4_uc002vux.2_Missense_Mutation_p.S344L|UGT1A3_uc010znb.1_Missense_Mutation_p.S344L|UGT1A3_uc002vuy.2_Missense_Mutation_p.S344L|UGT1A9_uc002vva.2_RNA|UGT1A1_uc010znc.1_Missense_Mutation_p.S343L|UGT1A1_uc002vvb.2_Missense_Mutation_p.S343L	NM_019078	NP_061951	P35504	UD15_HUMAN	UDP glycosyltransferase 1 family, polypeptide A5	344					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;4.51e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000523)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.00645)		ACCCGACCATCGAATCTTGCG	0.448													28	112					0	0	0.010818	0	0
TRPM8	79054	broad.mit.edu	37	2	234858746	234858746	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:234858746G>A	uc002vvh.2	+	9	1136	c.1096G>A	c.(1096-1098)GTG>ATG	p.V366M	TRPM8_uc010fyj.2_Missense_Mutation_p.V54M	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	366	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	ACCCCGCACGGTGTCCCGGCT	0.557													8	20					0	0	0.003080	0	0
THAP4	51078	broad.mit.edu	37	2	242572592	242572592	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:242572592G>A	uc002wbt.2	-	2	1203	c.980C>T	c.(979-981)TCC>TTC	p.S327F		NM_015963	NP_057047	Q8WY91	THAP4_HUMAN	THAP domain containing 4 isoform 1	327							DNA binding|metal ion binding				0		all_cancers(19;2.09e-34)|all_epithelial(40;2.09e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Ovarian(221;0.069)|Lung NSC(271;0.0886)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.2)		Epithelial(32;2.3e-33)|all cancers(36;8.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.68e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0844)		CTCGTTGATGGACATGGGGCT	0.642													19	44					0	0	0.006122	0	0
NEU4	129807	broad.mit.edu	37	2	242756232	242756232	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr2:242756232C>T	uc010fzr.2	+	3	431	c.345C>T	c.(343-345)ATC>ATT	p.I115I	NEU4_uc002wcl.2_RNA|NEU4_uc002wcm.2_Silent_p.I115I|NEU4_uc002wcn.1_Silent_p.I127I|NEU4_uc002wco.1_Silent_p.I115I|NEU4_uc002wcp.1_Silent_p.I127I	NM_080741	NP_542779	Q8WWR8	NEUR4_HUMAN	sialidase 4	115						lysosomal lumen|organelle inner membrane	exo-alpha-sialidase activity|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;3.84e-33)|all cancers(36;8.08e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.41e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0825)		CCGTGCAGATCGCCACGGGAA	0.701													4	3					0	0	0.009096	0	0
SIRPG	55423	broad.mit.edu	37	20	1629916	1629916	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:1629916C>T	uc002wfm.1	-	2	277	c.212G>A	c.(211-213)GGA>GAA	p.G71E	SIRPG_uc002wfn.1_Missense_Mutation_p.G71E|SIRPG_uc002wfo.1_Missense_Mutation_p.G71E	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	71	Extracellular (Potential).|Ig-like V-type.				blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						CCGGCCTGGTCCAACTCCTCT	0.512													16	53					0	0	0.006122	0	0
TMC2	117532	broad.mit.edu	37	20	2604977	2604977	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:2604977C>T	uc002wgf.1	+	17	2256	c.2241C>T	c.(2239-2241)TTC>TTT	p.F747F	TMC2_uc002wgg.1_Silent_p.F731F	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	747	Extracellular (Potential).					integral to membrane				ovary(3)	3						TCCCAACCTTCCTGGGCAAGA	0.498													28	61					0	0	0.005443	0	0
C20orf194	25943	broad.mit.edu	37	20	3240173	3240173	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:3240173G>A	uc002wii.2	-	33	3059	c.3008C>T	c.(3007-3009)CCC>CTC	p.P1003L	C20orf194_uc002wij.3_Missense_Mutation_p.P742L|C20orf194_uc002wik.2_Missense_Mutation_p.P677L	NM_001009984	NP_001009984	Q5TEA3	CT194_HUMAN	hypothetical protein LOC25943	1003											0						TCCGGAGAAGGGACTTGGCTT	0.537													20	74					0	0	0.007413	0	0
PAK7	57144	broad.mit.edu	37	20	9546738	9546738	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:9546738G>A	uc002wnl.2	-	6	1829	c.1284C>T	c.(1282-1284)TCC>TCT	p.S428S	PAK7_uc002wnk.2_Silent_p.S428S|PAK7_uc002wnj.2_Silent_p.S428S|PAK7_uc010gby.1_Silent_p.S428S	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	428	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			ACTGTTCATGGGACACCCTGG	0.632													22	47					0	0	0.014323	0	0
PAK7	57144	broad.mit.edu	37	20	9546835	9546835	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:9546835G>A	uc002wnl.2	-	6	1732	c.1187C>T	c.(1186-1188)TCC>TTC	p.S396F	PAK7_uc002wnk.2_Missense_Mutation_p.S396F|PAK7_uc002wnj.2_Missense_Mutation_p.S396F|PAK7_uc010gby.1_Missense_Mutation_p.S396F	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	396	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			GGAAGCCGTGGAGATGTACTG	0.612													15	53					0	0	0.003163	0	0
CRNKL1	51340	broad.mit.edu	37	20	20033086	20033086	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:20033086G>A	uc002wrs.2	-	2	416	c.384C>T	c.(382-384)TCC>TCT	p.S128S	C20orf26_uc010gcw.1_5'Flank|C20orf26_uc010zse.1_5'Flank|C20orf26_uc002wru.2_5'Flank|CRNKL1_uc002wrt.1_Silent_p.S116S	NM_016652	NP_057736	Q9BZJ0	CRNL1_HUMAN	crooked neck-like 1 protein	128					spliceosome assembly	catalytic step 2 spliceosome|cytoplasm|nuclear speck	RNA binding			ovary(2)|large_intestine(1)	3						AAAACAAACAGGATCTCGGAA	0.582													22	51					0	0	0.021523	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20517359	20517359	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:20517359G>A	uc002wrz.2	-	25	3498	c.3355C>T	c.(3355-3357)CCT>TCT	p.P1119S	RALGAPA2_uc010gcx.2_Missense_Mutation_p.P823S|RALGAPA2_uc010zsg.1_Missense_Mutation_p.P567S	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	1119					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						TGCAGTAAAGGAATCTCCTGG	0.458													5	22					0	0	0.014758	0	0
NINL	22981	broad.mit.edu	37	20	25498400	25498400	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:25498400G>A	uc002wux.1	-	3	340	c.266C>T	c.(265-267)TCT>TTT	p.S89F	NINL_uc010gdn.1_Missense_Mutation_p.S89F|NINL_uc010gdo.1_5'UTR|NINL_uc010ztf.1_Missense_Mutation_p.S105F	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	89					G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						TGATTCCAAAGAACTACTGTC	0.378													13	19					0	0	0.020292	0	0
TPX2	22974	broad.mit.edu	37	20	30381722	30381722	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:30381722C>T	uc002wwp.1	+	14	2279	c.1581C>T	c.(1579-1581)ATC>ATT	p.I527I	TPX2_uc010gdv.1_Silent_p.I563I	NM_012112	NP_036244	Q9ULW0	TPX2_HUMAN	TPX2, microtubule-associated protein homolog	527					activation of protein kinase activity|apoptosis|cell division|cell proliferation|mitosis|regulation of mitotic spindle organization	cytoplasm|microtubule|nucleus|spindle pole	ATP binding|GTP binding|protein kinase binding			large_intestine(1)|ovary(1)	2			Epithelial(4;0.000771)|Colorectal(19;0.00306)|all cancers(5;0.004)|COAD - Colon adenocarcinoma(19;0.0347)|OV - Ovarian serous cystadenocarcinoma(3;0.0656)			AGCCCCAAATCCCAGAGGCAA	0.418													46	128					0	0	0.014410	0	0
TM9SF4	9777	broad.mit.edu	37	20	30747794	30747794	+	Splice_Site	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:30747794G>A	uc002wxj.2	+	16	1805	c.1570_splice	c.e16-1	p.A524_splice	TM9SF4_uc010zts.1_Splice_Site_p.A431_splice|TM9SF4_uc002wxk.2_Splice_Site_p.A507_splice|TM9SF4_uc010gdz.2_Splice_Site_p.A403_splice	NM_014742	NP_055557	Q92544	TM9S4_HUMAN	transmembrane 9 superfamily protein member 4							integral to membrane				central_nervous_system(1)|pancreas(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			TGTGTCCACAGGCTATCTGGG	0.517													14	42					0	0	0.016723	0	0
C20orf186	149954	broad.mit.edu	37	20	31671373	31671373	+	Missense_Mutation	SNP	C	T	T	rs140887073		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:31671373C>T	uc010zue.1	+	3	385	c.370C>T	c.(370-372)CGC>TGC	p.R124C		NM_182519	NP_872325	P59827	LPLC4_HUMAN	antimicrobial peptide RY2G5 precursor	124						cytoplasm|extracellular region	lipid binding				0						CAGTGGCTATCGCAGTGCCGA	0.592													23	63					0	0	0.018920	0	0
C20orf71	128861	broad.mit.edu	37	20	31805385	31805385	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:31805385C>T	uc002wyr.2	+	1	251	c.43C>T	c.(43-45)CTG>TTG	p.L15L	C20orf71_uc002wys.2_Silent_p.L15L	NM_178466	NP_848561	Q9BQP9	SPLC3_HUMAN	short long palate, lung and nasal epithelium	15						extracellular region	lipid binding			ovary(1)|skin(1)	2						CCTCGGGTTGCTGGCCTTGCC	0.597													13	60					0	0	0.020292	0	0
NCOA6	23054	broad.mit.edu	37	20	33328820	33328820	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:33328820G>A	uc002xav.2	-	12	7811	c.5240C>T	c.(5239-5241)CCT>CTT	p.P1747L	NCOA6_uc002xaw.2_Missense_Mutation_p.P1747L	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	1747	EP300/CRSP3-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						AGACGTACAAGGAGGGGAAGG	0.542													15	63					0	0	0.020292	0	0
GGT7	2686	broad.mit.edu	37	20	33449295	33449295	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:33449295G>A	uc002xay.2	-	4	671	c.628C>T	c.(628-630)CCA>TCA	p.P210S	GGT7_uc002xaz.1_Missense_Mutation_p.P227S|GGT7_uc002xba.1_Missense_Mutation_p.P210S	NM_178026	NP_821158	Q9UJ14	GGT7_HUMAN	gamma-glutamyltransferase 7	210	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity			ovary(1)	1						AGGGCCCCTGGTGCGGACTCC	0.567													20	47					0	0	0.008871	0	0
MYH7B	57644	broad.mit.edu	37	20	33588110	33588110	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:33588110G>A	uc002xbi.1	+	37	5014	c.4922G>A	c.(4921-4923)CGA>CAA	p.R1641Q		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	1599	Potential.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			AACCACCAGCGAGCTGTGGAG	0.602													73	190					0	0	0.014410	0	0
DLGAP4	22839	broad.mit.edu	37	20	35060380	35060380	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:35060380C>T	uc002xff.2	+	3	695	c.260C>T	c.(259-261)CCC>CTC	p.P87L	DLGAP4_uc010zvp.1_Missense_Mutation_p.P87L	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	87					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				GAGGAGAGCCCCTTCCCCAGC	0.627													28	55					0	0	0.008361	0	0
C20orf118	140711	broad.mit.edu	37	20	35507531	35507531	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:35507531C>T	uc002xgg.1	+	3	285	c.277C>T	c.(277-279)CTG>TTG	p.L93L		NM_080628	NP_542195	A0PJX2	CT118_HUMAN	hypothetical protein LOC140711	93	TLD.										0		Myeloproliferative disorder(115;0.00874)				CCTGCAGAGCCTGTACCGGCG	0.662													19	72					0	0	0.008871	0	0
LPIN3	64900	broad.mit.edu	37	20	39986017	39986017	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:39986017C>T	uc002xjx.2	+	16	2060	c.1969C>T	c.(1969-1971)CAT>TAT	p.H657Y	LPIN3_uc010ggh.2_Missense_Mutation_p.H658Y|LPIN3_uc010zwf.1_RNA	NM_022896	NP_075047	Q9BQK8	LPIN3_HUMAN	lipin 3	657	LXXIL motif.|C-LIP.				fatty acid metabolic process	nucleus	phosphatidate phosphatase activity			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(115;0.000739)				TGCTCTGGGCCATATCCTGCC	0.612													19	60					0	0	0.010504	0	0
SEMG2	6407	broad.mit.edu	37	20	43851307	43851307	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:43851307A>C	uc010ggz.2	+	2	1091	c.1034A>C	c.(1033-1035)AAA>ACA	p.K345T	SEMG2_uc002xnk.2_Missense_Mutation_p.K345T|SEMG2_uc002xnl.2_Missense_Mutation_p.K345T	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	345	Repeat-rich region.|4 X 60 AA tandem repeats, type I.				sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				AAGGAAAATAAAATATCATAC	0.383													9	28					0	0	0.004482	0	0
ZSWIM1	90204	broad.mit.edu	37	20	44511516	44511516	+	Missense_Mutation	SNP	C	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:44511516C>A	uc010ghi.2	+	2	398	c.285C>A	c.(283-285)TTC>TTA	p.F95L	ZSWIM1_uc010zxh.1_Intron	NM_080603	NP_542170	Q9BR11	ZSWM1_HUMAN	zinc finger, SWIM-type containing 1	95							zinc ion binding			skin(1)	1		Myeloproliferative disorder(115;0.028)				TATATACCTTCCTGGTGGATG	0.517													20	48					1.01871e-10	1.05882e-10	0.008871	1	0
SLC12A5	57468	broad.mit.edu	37	20	44664159	44664159	+	Silent	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:44664159A>G	uc010zxl.1	+	3	409	c.333A>G	c.(331-333)AAA>AAG	p.K111K	SLC12A5_uc002xra.2_Silent_p.K88K|SLC12A5_uc010zxm.1_RNA|SLC12A5_uc002xrb.2_Silent_p.K88K	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	111	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	AGGGTGGAAAAAAGAAGCCGG	0.368													14	46					0	0	0.016723	0	0
CDH22	64405	broad.mit.edu	37	20	44806637	44806637	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:44806637G>A	uc002xrm.2	-	10	2264	c.1863C>T	c.(1861-1863)TCC>TCT	p.S621S	CDH22_uc010ghk.1_Silent_p.S621S	NM_021248	NP_067071	Q9UJ99	CAD22_HUMAN	cadherin 22 precursor	621	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|skin(1)	5		Myeloproliferative disorder(115;0.0122)				CGGGGCTGAGGGAGGCGGCCA	0.647													7	27					0	0	0.004482	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870935	51870935	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:51870935C>T	uc002xwo.2	+	2	1894	c.938C>T	c.(937-939)TCC>TTC	p.S313F		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	313					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			CCAACCATTTCCTCGAAAATG	0.453													24	71					0	0	0.005443	0	0
CBLN4	140689	broad.mit.edu	37	20	54573646	54573646	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:54573646G>A	uc002xxa.2	-	3	1358	c.573C>T	c.(571-573)TCC>TCT	p.S191S		NM_080617	NP_542184	Q9NTU7	CBLN4_HUMAN	cerebellin 4 precursor	191	C1q.					cell junction|extracellular region|synapse				ovary(3)|pancreas(1)	4			Colorectal(105;0.202)			CAGAAAACGTGGAATACTGCC	0.453													16	36					0	0	0.006122	0	0
TFAP2C	7022	broad.mit.edu	37	20	55209305	55209305	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:55209305C>T	uc002xya.2	+	5	1146	c.903C>T	c.(901-903)CTC>CTT	p.L301L	TFAP2C_uc010zzi.1_Silent_p.L132L	NM_003222	NP_003213	Q92754	AP2C_HUMAN	transcription factor AP-2 gamma	301	H-S-H (helix-span-helix), dimerization.				cell-cell signaling|male gonad development|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1			Colorectal(105;0.229)			ATGTGACTCTCCTGACATCCT	0.463													9	31					0	0	0.006214	0	0
GNAS	2778	broad.mit.edu	37	20	57415169	57415169	+	Missense_Mutation	SNP	G	A	A	rs139302910		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:57415169G>A	uc002xzt.2	+	1	375	c.8G>A	c.(7-9)CGG>CAG	p.R3Q	GNASAS_uc002xzs.1_Intron|GNAS_uc002xzu.3_5'Flank|GNAS_uc010gjq.2_5'Flank	NM_016592	NP_057676	P63092	GNAS2_HUMAN	GNAS complex locus NESP55	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			AGGATGGATCGGAGGTCCCGG	0.657			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			18	63					0	0	0.008871	0	0
ZNF831	128611	broad.mit.edu	37	20	57829603	57829603	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:57829603G>A	uc002yan.2	+	5	4839	c.4839G>A	c.(4837-4839)AGG>AGA	p.R1613R		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1613						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GTGACGGTAGGAAACGTCAGG	0.493													23	48					0	0	0.004656	0	0
LAMA5	3911	broad.mit.edu	37	20	60901756	60901756	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr20:60901756G>A	uc002ycq.2	-	40	5342	c.5275C>T	c.(5275-5277)CGT>TGT	p.R1759C		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	1759	Laminin IV type A.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGCTGCCCACGGTGAACGTGG	0.657													11	34					0	0	0.016723	0	0
TPTE	7179	broad.mit.edu	37	21	10942968	10942968	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr21:10942968G>A	uc002yip.1	-	12	987	c.619C>T	c.(619-621)CAT>TAT	p.H207Y	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.H189Y|TPTE_uc002yir.1_Missense_Mutation_p.H169Y|TPTE_uc010gkv.1_Missense_Mutation_p.H69Y	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	207					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TGAAACAGATGAAAAATTCTT	0.308													8	45					0	0	0.003080	0	0
NRIP1	8204	broad.mit.edu	37	21	16340213	16340213	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr21:16340213G>A	uc002yjx.2	-	4	899	c.301C>T	c.(301-303)CTG>TTG	p.L101L		NM_003489	NP_003480	P48552	NRIP1_HUMAN	nuclear receptor interacting protein 1	101	Repression domain 1.				androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		androgen receptor binding|estrogen receptor binding|glucocorticoid receptor binding|transcription coactivator activity|transcription corepressor activity				0				Epithelial(23;1.19e-05)|all cancers(11;4.64e-05)|COAD - Colon adenocarcinoma(22;0.000232)|Colorectal(24;0.0006)|OV - Ovarian serous cystadenocarcinoma(11;0.00418)|Lung(58;0.199)|LUSC - Lung squamous cell carcinoma(23;0.24)		GAATCAGACAGCCTCTTCCGC	0.458													9	29					0	0	0.008291	0	0
USP25	29761	broad.mit.edu	37	21	17183476	17183476	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr21:17183476A>G	uc002yjy.1	+	9	1095	c.878A>G	c.(877-879)AAC>AGC	p.N293S	USP25_uc011aby.1_Missense_Mutation_p.N293S|USP25_uc002yjz.1_Missense_Mutation_p.N293S|USP25_uc010gla.1_Intron	NM_013396	NP_037528	Q9UHP3	UBP25_HUMAN	ubiquitin specific peptidase 25	293					protein modification process|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)|liver(2)	5				Epithelial(23;7.55e-05)|all cancers(11;0.000429)|COAD - Colon adenocarcinoma(22;0.00543)|OV - Ovarian serous cystadenocarcinoma(11;0.00743)|Colorectal(24;0.0116)|Lung(58;0.0853)|LUSC - Lung squamous cell carcinoma(23;0.0889)		AAGCCAAAGAACCCCATGGTA	0.318													20	53					0	0	0.016522	0	0
NCAM2	4685	broad.mit.edu	37	21	22790801	22790801	+	Silent	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr21:22790801T>C	uc002yld.1	+	11	1641	c.1392T>C	c.(1390-1392)CCT>CCC	p.P464P	NCAM2_uc011acb.1_Silent_p.P322P	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	464	Ig-like C2-type 5.|Extracellular (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		AGATTGCACCTACATCTGACA	0.323													26	82					0	0	0.010818	0	0
GRIK1	2897	broad.mit.edu	37	21	31062114	31062114	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr21:31062114C>T	uc002yno.1	-	3	942	c.478G>A	c.(478-480)GCG>ACG	p.A160T	GRIK1_uc002ynn.2_Missense_Mutation_p.A160T|GRIK1_uc011acs.1_Missense_Mutation_p.A160T|GRIK1_uc011act.1_Missense_Mutation_p.A104T|GRIK1_uc010glq.1_Intron|GRIK1_uc002ynr.2_Missense_Mutation_p.A160T	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	160	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	TCCAGGATCGCCCTGCTGATA	0.488													36	66					0	0	0.019004	0	0
IFNAR2	3455	broad.mit.edu	37	21	34621083	34621083	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr21:34621083C>T	uc002yrd.2	+	6	792	c.464C>T	c.(463-465)CCA>CTA	p.P155L	IFNAR2_uc002yrb.2_Missense_Mutation_p.P155L|IFNAR2_uc002yrc.2_Missense_Mutation_p.P155L|IFNAR2_uc002yre.2_Missense_Mutation_p.P155L|IFNAR2_uc002yrf.2_Missense_Mutation_p.P155L|IFNAR2_uc002yrg.2_Missense_Mutation_p.P24L|IL10RB_uc002yrh.1_Missense_Mutation_p.P5L|IL10RB_uc002yri.1_5'UTR	NM_207585	NP_997468	P48551	INAR2_HUMAN	interferon alpha/beta receptor 2 isoform a	155	Extracellular (Potential).				JAK-STAT cascade|regulation of type I interferon-mediated signaling pathway|response to interferon-alpha|response to virus|type I interferon-mediated signaling pathway	extracellular region|extracellular space|integral to plasma membrane	protein kinase binding|type I interferon binding|type I interferon receptor activity				0					Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Interferon alfa-n3(DB00018)|Interferon alfacon-1(DB00069)|Interferon beta-1b(DB00068)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	GTGAAATTTCCATCTATTGTT	0.333													29	88					0	0	0.010818	0	0
TTC3	7267	broad.mit.edu	37	21	38569994	38569994	+	Silent	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr21:38569994A>G	uc002yvz.2	+	43	5808	c.5703A>G	c.(5701-5703)AAA>AAG	p.K1901K	TTC3_uc002ywa.2_Silent_p.K1901K|TTC3_uc002ywb.2_Silent_p.K1901K|TTC3_uc010gnf.2_Silent_p.K1666K|TTC3_uc002ywc.2_Silent_p.K1591K	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	1901	Poly-Lys.				protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				AGAAAAAGAAAAAGGTATTTT	0.279													5	10					0	0	0.014758	0	0
DSCR4	10281	broad.mit.edu	37	21	39427068	39427068	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr21:39427068C>T	uc002ywp.2	-	3	343	c.238G>A	c.(238-240)GAG>AAG	p.E80K		NM_005867	NP_005858	P56555	DSCR4_HUMAN	Down syndrome critical region protein 4	80										ovary(1)	1						TGCTGCCCCTCTCTGGTTCTG	0.428													20	48					0	0	0.012319	0	0
DSCAM	1826	broad.mit.edu	37	21	41447102	41447102	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr21:41447102C>T	uc002yyq.1	-	27	5202	c.4750G>A	c.(4750-4752)GAA>AAA	p.E1584K	DSCAM_uc002yyr.1_Intron	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1584	Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AGCCCTTCTTCGTTTTGGACA	0.527													14	45					0	0	0.020292	0	0
PWP2	5822	broad.mit.edu	37	21	45535741	45535741	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr21:45535741G>A	uc002zeb.2	+	7	866	c.776G>A	c.(775-777)GGA>GAA	p.G259E		NM_005049	NP_005040	Q15269	PWP2_HUMAN	PWP2 periodic tryptophan protein homolog	259						cytoplasm|nucleolus	signal transducer activity			pancreas(1)	1				STAD - Stomach adenocarcinoma(101;0.172)|Colorectal(79;0.2)		ACCATCCGGGGAAAAGCCACT	0.517													6	12					0	0	0.001168	0	0
PWP2	5822	broad.mit.edu	37	21	45535744	45535744	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr21:45535744A>G	uc002zeb.2	+	7	869	c.779A>G	c.(778-780)AAA>AGA	p.K260R		NM_005049	NP_005040	Q15269	PWP2_HUMAN	PWP2 periodic tryptophan protein homolog	260						cytoplasm|nucleolus	signal transducer activity			pancreas(1)	1				STAD - Stomach adenocarcinoma(101;0.172)|Colorectal(79;0.2)		ATCCGGGGAAAAGCCACTCCG	0.512													6	11					0	0	0.001168	0	0
KRTAP12-1	353332	broad.mit.edu	37	21	46101941	46101941	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr21:46101941G>A	uc002zfv.2	-	1	138	c.98C>T	c.(97-99)TCC>TTC	p.S33F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181686	NP_859014	P59990	KR121_HUMAN	keratin associated protein 12-1	33	4.|14 X 5 AA approximate repeats.					keratin filament				skin(2)	2						CACGCACACGGAGGACTGGCA	0.677													16	42					0	0	0.004007	0	0
CCT8L2	150160	broad.mit.edu	37	22	17072668	17072668	+	Missense_Mutation	SNP	G	A	A	rs147789853	by1000genomes	TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr22:17072668G>A	uc002zlp.1	-	1	1033	c.773C>T	c.(772-774)ACG>ATG	p.T258M		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	258					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				AAGACGGGCCGTTGCTGGTGC	0.502													23	78					0	0	0.014323	0	0
CCT8L2	150160	broad.mit.edu	37	22	17073303	17073303	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr22:17073303G>A	uc002zlp.1	-	1	398	c.138C>T	c.(136-138)GTC>GTT	p.V46V		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	46					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				AAGGCCGGATGACACTGGCCA	0.642													20	68					0	0	0.012319	0	0
CECR6	27439	broad.mit.edu	37	22	17600315	17600315	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr22:17600315T>C	uc002zmb.2	-	1	1899	c.1703A>G	c.(1702-1704)TAT>TGT	p.Y568C	CECR6_uc002zma.2_Missense_Mutation_p.Y213C|uc002zmc.2_5'Flank	NM_031890	NP_114096	Q9BXQ6	CECR6_HUMAN	cat eye syndrome chromosome region, candidate 6	568											0		all_epithelial(15;0.0181)|Lung NSC(13;0.109)|all_lung(157;0.132)		Colorectal(9;0.221)		GGTGTTGACATAGCCATGAGC	0.627													3	7					0	0	0.004672	0	0
TXNRD2	10587	broad.mit.edu	37	22	19865681	19865681	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr22:19865681C>T	uc011ahc.1	-	16	1410	c.1377G>A	c.(1375-1377)CTG>CTA	p.L459L	TXNRD2_uc002zql.1_Silent_p.L213L|TXNRD2_uc002zqm.1_RNA|TXNRD2_uc002zqn.1_RNA|TXNRD2_uc002zqo.1_RNA|TXNRD2_uc002zqp.1_RNA|TXNRD2_uc002zqr.1_Silent_p.L458L|TXNRD2_uc002zqj.1_RNA|TXNRD2_uc002zqq.1_Silent_p.L109L	NM_006440	NP_006431	Q9NNW7	TRXR2_HUMAN	thioredoxin reductase 2 precursor	459					cell redox homeostasis|response to oxygen radical	mitochondrion	flavin adenine dinucleotide binding|NADP binding|thioredoxin-disulfide reductase activity			ovary(2)	2	Colorectal(54;0.0993)					GGCCCAGCACCAGCTGTGGGG	0.617													8	23					0	0	0.004482	0	0
TOP3B	8940	broad.mit.edu	37	22	22318385	22318385	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr22:22318385C>T	uc002zvs.2	-	11	1549	c.1114G>A	c.(1114-1116)GCA>ACA	p.A372T	TOP3B_uc010gtm.1_5'UTR|TOP3B_uc002zvr.2_Missense_Mutation_p.A97T|TOP3B_uc010gtl.2_Missense_Mutation_p.A372T|TOP3B_uc002zvt.3_Missense_Mutation_p.A372T	NM_003935	NP_003926	O95985	TOP3B_HUMAN	topoisomerase (DNA) III beta	372					DNA topological change	nucleus	ATP binding|DNA topoisomerase type I activity|protein binding			kidney(1)	1	Colorectal(54;0.105)			READ - Rectum adenocarcinoma(21;0.145)		ATACCTTCTGCTAACAACCGC	0.612													18	27					0	0	0.004990	0	0
LOC96610	96610	broad.mit.edu	37	22	22758882	22758882	+	RNA	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr22:22758882G>A	uc011aim.1	+	53		c.5948G>A								Parts of antibodies, mostly variable regions.												0						CAGCTCCCAGGAACAGCCCCC	0.567													44	132					0	0	0.011902	0	0
ZNF280A	129025	broad.mit.edu	37	22	22869717	22869717	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr22:22869717G>A	uc002zwe.2	-	2	491	c.238C>T	c.(238-240)CGT>TGT	p.R80C	LOC96610_uc011aim.1_Intron	NM_080740	NP_542778	P59817	Z280A_HUMAN	zinc finger protein 280A	80					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		GGATATTGACGGAAGTGGCCT	0.468													35	81					0	0	0.019004	0	0
GAS2L1	10634	broad.mit.edu	37	22	29704233	29704233	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr22:29704233G>A	uc003afa.1	+	2	337	c.138G>A	c.(136-138)CCG>CCA	p.P46P	GAS2L1_uc010gvm.1_Silent_p.P46P|GAS2L1_uc003afb.1_Silent_p.P46P|GAS2L1_uc003afc.1_Silent_p.P46P|GAS2L1_uc003afd.1_Silent_p.P46P|GAS2L1_uc003afe.1_Silent_p.P46P	NM_152236	NP_689422	Q99501	GA2L1_HUMAN	growth arrest-specific 2 like 1 isoform a	46	CH.				cell cycle arrest	cytoplasm|cytoskeleton					0						TGGGTCTCCCGGGTGGTGGCG	0.672													5	5					0	0	0.001168	0	0
SEC14L4	284904	broad.mit.edu	37	22	30887647	30887647	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr22:30887647C>T	uc003aid.2	-	11	1094	c.994G>A	c.(994-996)GAG>AAG	p.E332K	SEC14L4_uc011akz.1_Missense_Mutation_p.E332K|SEC14L4_uc003aie.2_Missense_Mutation_p.E317K|SEC14L4_uc003aif.2_Missense_Mutation_p.E278K	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	332	GOLD.					integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	TCCGTCATCTCCCTAGCACTC	0.607													30	93					0	0	0.010818	0	0
EIF4ENIF1	56478	broad.mit.edu	37	22	31850259	31850259	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr22:31850259G>A	uc003akz.1	-	10	1547	c.1383C>T	c.(1381-1383)CAC>CAT	p.H461H	EIF4ENIF1_uc003akx.1_Silent_p.H140H|EIF4ENIF1_uc003aky.1_Silent_p.H140H|EIF4ENIF1_uc003ala.1_Silent_p.H461H|EIF4ENIF1_uc003alb.1_Silent_p.H298H	NM_019843	NP_062817	Q9NRA8	4ET_HUMAN	eukaryotic translation initiation factor 4E	461						nucleus	protein binding|protein transporter activity			ovary(1)	1						TCTCTTCTAGGTGTTCTGCCA	0.483													18	61					0	0	0.008871	0	0
RFPL3	10738	broad.mit.edu	37	22	32756602	32756602	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr22:32756602G>A	uc003amj.2	+	2	942	c.737G>A	c.(736-738)GGG>GAG	p.G246E	RFPL3_uc010gwn.2_Missense_Mutation_p.G217E|RFPL3S_uc003amk.2_RNA|RFPL3S_uc003aml.2_RNA	NM_001098535	NP_001092005	O75679	RFPL3_HUMAN	ret finger protein-like 3 isoform 1	246	B30.2/SPRY.						zinc ion binding			ovary(1)	1						CAGCGAGTGGGGATTTTTCTG	0.512													17	61					0	0	0.006122	0	0
TIMP3	7078	broad.mit.edu	37	22	33253291	33253291	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr22:33253291C>T	uc003anb.2	+	3	1446	c.260C>T	c.(259-261)TCC>TTC	p.S87F	SYN3_uc003amx.2_Intron|SYN3_uc003amy.2_Intron|SYN3_uc003amz.2_Intron	NM_000362	NP_000353	P35625	TIMP3_HUMAN	tissue inhibitor of metalloproteinase 3	87	NTR.				negative regulation of membrane protein ectodomain proteolysis|visual perception		metal ion binding|metalloendopeptidase inhibitor activity|protein binding			lung(1)	1						ACGGAAGCTTCCGAGAGTCTC	0.512													25	84					0	0	0.010818	0	0
PICK1	9463	broad.mit.edu	37	22	38461067	38461067	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr22:38461067C>T	uc003auq.2	+	4	602	c.212C>T	c.(211-213)ACC>ATC	p.T71I	PICK1_uc003aur.2_Missense_Mutation_p.T71I|PICK1_uc003aus.2_Missense_Mutation_p.T71I|PICK1_uc003aut.2_Missense_Mutation_p.T71I	NM_012407	NP_036539	Q9NRD5	PICK1_HUMAN	protein interacting with C kinase 1	71	PDZ.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|DNA methylation involved in embryo development|DNA methylation involved in gamete generation|monoamine transport|neuronal ion channel clustering|protein phosphorylation|receptor clustering|retrograde vesicle-mediated transport, Golgi to ER|synaptic transmission	cell junction|endocytic vesicle membrane|Golgi apparatus|perinuclear region of cytoplasm|presynaptic membrane	ATPase activity|metal ion binding|protein C-terminus binding|protein kinase C binding|receptor binding				0	Melanoma(58;0.045)					GATGAGATCACCGGTGTCAAT	0.557													21	63					0	0	0.010504	0	0
APOBEC3D	140564	broad.mit.edu	37	22	39421141	39421141	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr22:39421141C>T	uc011aoe.1	+	3	331	c.277C>T	c.(277-279)CCT>TCT	p.P93S	APOBEC3D_uc011aod.1_Missense_Mutation_p.P93S|APOBEC3D_uc011aof.1_Intron|APOBEC3D_uc003awu.3_Intron|APOBEC3D_uc003awt.3_Missense_Mutation_p.P93S|APOBEC3D_uc010gxu.2_Intron	NM_152426	NP_689639	Q96AK3	ABC3D_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	93					negative regulation of transposition		hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines|zinc ion binding				0	Melanoma(58;0.04)					CAACCGACTGCCTGCTAACAG	0.433													13	94					0	0	0.004007	0	0
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45244881	45244881	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr22:45244881G>A	uc003bfd.2	+	15	1720	c.1448G>A	c.(1447-1449)CGA>CAA	p.R483Q	PRR5-ARHGAP8_uc003bfc.2_Missense_Mutation_p.R404Q|PRR5-ARHGAP8_uc011aqi.1_Missense_Mutation_p.R395Q|PRR5-ARHGAP8_uc011aqj.1_Missense_Mutation_p.R309Q|ARHGAP8_uc003bfi.2_Missense_Mutation_p.R273Q|ARHGAP8_uc010gzv.2_Missense_Mutation_p.R273Q|ARHGAP8_uc003bfj.2_Missense_Mutation_p.R304Q|ARHGAP8_uc003bfk.2_Missense_Mutation_p.R273Q|ARHGAP8_uc003bfl.2_RNA	NM_181335	NP_851852			Rho GTPase activating protein 8 isoform 2											skin(2)	2						ACCTTCCTGCGAGAGCTGCCC	0.612													38	120					0	0	0.013114	0	0
GTSE1	51512	broad.mit.edu	37	22	46724623	46724623	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr22:46724623C>T	uc011aqy.1	+	10	1975	c.1763C>T	c.(1762-1764)TCC>TTC	p.S588F	GTSE1_uc011aqz.1_Missense_Mutation_p.S435F|GTSE1_uc003bhm.1_Missense_Mutation_p.S213F|GTSE1_uc003bhn.2_5'Flank|uc011ara.1_5'Flank|uc003bho.3_5'Flank	NM_016426	NP_057510	Q9NYZ3	GTSE1_HUMAN	G-2 and S-phase expressed 1	569					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G2 phase of mitotic cell cycle|microtubule-based process	cytoplasmic microtubule				ovary(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00462)		AAGACAGATTCCAGGCTGGTG	0.468													25	84					0	0	0.010818	0	0
TTLL8	164714	broad.mit.edu	37	22	50484295	50484295	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr22:50484295C>T	uc011ark.1	-	5	498	c.498G>A	c.(496-498)CAG>CAA	p.Q166Q		NM_001080447	NP_001073916			tubulin tyrosine ligase-like family, member 8											ovary(2)	2		all_cancers(38;3.44e-07)|all_epithelial(38;2.44e-06)|all_lung(38;0.00141)|Breast(42;0.00519)|Lung NSC(38;0.0199)|Ovarian(80;0.142)|Lung SC(80;0.162)		READ - Rectum adenocarcinoma(2;0.000882)|Colorectal(2;0.00311)|BRCA - Breast invasive adenocarcinoma(115;0.226)		CCAGGAACTCCTGCTGCTCAC	0.622													5	6					0	0	0.001168	0	0
NCAPH2	29781	broad.mit.edu	37	22	50957150	50957150	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr22:50957150C>T	uc003blr.3	+	8	841	c.719C>T	c.(718-720)TCC>TTC	p.S240F	NCAPH2_uc003blq.3_Missense_Mutation_p.S240F|NCAPH2_uc003blv.2_Missense_Mutation_p.S240F|NCAPH2_uc010hbb.2_Missense_Mutation_p.S91F|NCAPH2_uc003blu.3_RNA|NCAPH2_uc003bls.3_RNA|NCAPH2_uc003blt.3_RNA|NCAPH2_uc003blw.3_RNA|NCAPH2_uc003blx.3_Missense_Mutation_p.S240F|NCAPH2_uc003bly.3_RNA	NM_152299	NP_689512	Q6IBW4	CNDH2_HUMAN	kleisin beta isoform 2	240					chromosome condensation	chromosome|nucleus				ovary(1)|skin(1)	2		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.212)		CTCGGCTTCTCCCAGGAGCCA	0.642													6	6					0	0	0.003080	0	0
CNTN4	152330	broad.mit.edu	37	3	3095505	3095505	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:3095505G>A	uc003bpc.2	+	23	3047	c.2826G>A	c.(2824-2826)TGG>TGA	p.W942*	CNTN4_uc003bpe.2_Nonsense_Mutation_p.W614*|CNTN4_uc003bpf.2_Nonsense_Mutation_p.W613*|CNTN4_uc003bpg.2_Nonsense_Mutation_p.W198*	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	942	Fibronectin type-III 4.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		TGTACAGATGGAACAGACAAA	0.403													10	37					0	0	0.010729	0	0
OXTR	5021	broad.mit.edu	37	3	8794707	8794707	+	Missense_Mutation	SNP	G	A	A	rs35062132	by1000genomes	TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:8794707G>A	uc003brc.2	-	4	1748	c.1126C>T	c.(1126-1128)CGC>TGC	p.R376C		NM_000916	NP_000907	P30559	OXYR_HUMAN	oxytocin receptor	376	Cytoplasmic (Potential).				female pregnancy|lactation|muscle contraction	integral to plasma membrane	oxytocin receptor activity|vasopressin receptor activity				0				OV - Ovarian serous cystadenocarcinoma(96;0.15)	Carbetocin(DB01282)	CTGGAGCTGCGATGGCTCAGG	0.642													11	27					0	0	0.008291	0	0
TIMP4	7079	broad.mit.edu	37	3	12198884	12198884	+	Splice_Site	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:12198884C>T	uc003bwo.2	-	2	544	c.237_splice	c.e2+1	p.K79_splice	SYN2_uc003bwl.1_Intron|SYN2_uc003bwm.2_Intron|SYN2_uc003bwn.2_Intron	NM_003256	NP_003247	Q99727	TIMP4_HUMAN	tissue inhibitor of metalloproteinase 4								metal ion binding|metalloendopeptidase inhibitor activity				0						CCCCCATGTACCTTTATCTGT	0.527													11	206					0	0	0.010729	0	0
DAZL	1618	broad.mit.edu	37	3	16635178	16635178	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:16635178C>T	uc003cbb.2	-	9	1013	c.719G>A	c.(718-720)GGA>GAA	p.G240E	DAZL_uc003cba.2_Missense_Mutation_p.G260E	NM_001351	NP_001342	Q92904	DAZL_HUMAN	deleted in azoospermia-like	240					germ cell development|multicellular organismal development|positive regulation of translational initiation|spermatogenesis	cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding|translation activator activity				0						TGGGCCATTTCCAGAGGGTGG	0.333													8	9					0	0	0.006214	0	0
THRB	7068	broad.mit.edu	37	3	24169111	24169111	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:24169111C>T	uc003ccx.3	-	10	1372	c.1023G>A	c.(1021-1023)CTG>CTA	p.L341L	THRB_uc010hfe.2_Silent_p.L341L|THRB_uc003ccy.3_Silent_p.L341L|THRB_uc003ccz.3_Silent_p.L336L	NM_001128176	NP_001121648	P10828	THB_HUMAN	thyroid hormone receptor, beta	341	Ligand-binding.|Interaction with NR2F6.		L -> P (in GTHR).		regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription corepressor activity|zinc ion binding			skin(2)|pancreas(1)	3					Levothyroxine(DB00451)|Liothyronine(DB00279)	CCCCATTTTTCAGCTGGCCCC	0.537													12	73					0	0	0.003163	0	0
ARPP21	10777	broad.mit.edu	37	3	35834018	35834018	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:35834018A>T	uc003cgb.2	+	19	2441	c.2177A>T	c.(2176-2178)TAT>TTT	p.Y726F	ARPP21_uc003cga.2_Missense_Mutation_p.Y707F|ARPP21_uc011axy.1_Missense_Mutation_p.Y727F|ARPP21_uc003cgf.2_Missense_Mutation_p.Y562F|ARPP21_uc003cgg.2_Missense_Mutation_p.Y249F	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	726	Gln-rich.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						ATGTCTTCTTATCAGGTGCTC	0.478													8	24					0	0	0.006214	0	0
TRANK1	9881	broad.mit.edu	37	3	36872408	36872408	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:36872408G>A	uc003cgj.2	-	12	7186	c.6884C>T	c.(6883-6885)TCG>TTG	p.S2295L		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2845					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CACCATATCCGAAACCCTCTT	0.597													25	76					0	0	0.018920	0	0
ITGA9	3680	broad.mit.edu	37	3	37725427	37725427	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:37725427A>G	uc003chd.2	+	18	2041	c.1988A>G	c.(1987-1989)AAC>AGC	p.N663S		NM_002207	NP_002198	Q13797	ITA9_HUMAN	integrin, alpha 9 precursor	663	Extracellular (Potential).				axon guidance|cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			breast(3)|pancreas(1)|lung(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.165)|Kidney(284;0.197)		TCTATCTCCAACCTCGGAGAT	0.458													16	40					0	0	0.004007	0	0
SCN11A	11280	broad.mit.edu	37	3	38936058	38936058	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:38936058G>A	uc011ays.1	-	15	3000	c.2801C>T	c.(2800-2802)GCA>GTA	p.A934V	SCN11A_uc010hhn.1_Missense_Mutation_p.A50V	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	934					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GATGCGCTGTGCATTATCTTC	0.488													44	126					0	0	0.014410	0	0
SCN11A	11280	broad.mit.edu	37	3	38991652	38991652	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:38991652C>T	uc011ays.1	-	1	401	c.202G>A	c.(202-204)GAC>AAC	p.D68N		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	68					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CGAGGAATGTCGCCATAGAGC	0.453													34	136					0	0	0.005524	0	0
MYRIP	25924	broad.mit.edu	37	3	40231917	40231917	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:40231917C>T	uc003cka.2	+	10	1763	c.1628C>T	c.(1627-1629)TCC>TTC	p.S543F	MYRIP_uc010hhu.2_RNA|MYRIP_uc010hhv.2_Missense_Mutation_p.S543F|MYRIP_uc010hhw.2_Missense_Mutation_p.S454F|MYRIP_uc011ayz.1_Missense_Mutation_p.S356F|uc003ckb.2_Intron	NM_015460	NP_056275	Q8NFW9	MYRIP_HUMAN	myosin VIIA and Rab interacting protein	543	Myosin-binding.|Actin-binding.				intracellular protein transport		actin binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.174)|Kidney(284;0.206)		GAACCATCTTCCCCCAGCGCC	0.597													16	30					0	0	0.004990	0	0
ZNF620	253639	broad.mit.edu	37	3	40558019	40558019	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:40558019G>A	uc003ckk.2	+	5	1083	c.934G>A	c.(934-936)GAA>AAA	p.E312K	ZNF620_uc003ckl.2_Missense_Mutation_p.E198K	NM_175888	NP_787084	Q6ZNG0	ZN620_HUMAN	zinc finger protein 620	312	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0519)|Kidney(284;0.0653)		TGAATGTAACGAATGTTGGAA	0.473													19	47					0	0	0.007413	0	0
KIF15	56992	broad.mit.edu	37	3	44844342	44844342	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:44844342G>A	uc003cnx.3	+	14	1695	c.1546G>A	c.(1546-1548)GAA>AAA	p.E516K	KIF15_uc010hiq.2_Missense_Mutation_p.E419K|KIF15_uc003cny.1_Missense_Mutation_p.E151K	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15	516	Potential.				blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		GTATGCTATGGAAAATCATTC	0.383													14	45					0	0	0.020292	0	0
TGM4	7047	broad.mit.edu	37	3	44945382	44945382	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:44945382C>T	uc003coc.3	+	9	1051	c.978C>T	c.(976-978)TTC>TTT	p.F326F		NM_003241	NP_003232	P49221	TGM4_HUMAN	transglutaminase 4 (prostate)	326					peptide cross-linking|protein polyamination		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00963)|KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0686)	L-Glutamine(DB00130)	GCAGGAATTTCCATGTGTGGA	0.592													39	112					0	0	0.010771	0	0
CCR1	1230	broad.mit.edu	37	3	46245004	46245004	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:46245004G>A	uc003cph.1	-	2	872	c.801C>T	c.(799-801)TTC>TTT	p.F267F	CCR3_uc003cpg.1_Intron	NM_001295	NP_001286	P32246	CCR1_HUMAN	chemokine (C-C motif) receptor 1	267	Extracellular (Potential).				cell adhesion|cell-cell signaling|cytokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	integral to plasma membrane	C-C chemokine receptor activity			skin(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		GGGTGAACAGGAAGTCTTGGA	0.448													7	24					0	0	0.004482	0	0
NBEAL2	23218	broad.mit.edu	37	3	47043884	47043884	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:47043884C>T	uc003cqp.2	+	32	5354	c.5175C>T	c.(5173-5175)TTC>TTT	p.F1725F	NBEAL2_uc010hjm.1_Silent_p.F1102F|NBEAL2_uc010hjn.1_Silent_p.F121F|NBEAL2_uc010hjo.1_5'Flank	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	1725							binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		TGTCCCAGTTCGAAATGGACA	0.582													19	74					0	0	0.018920	0	0
ZNF589	51385	broad.mit.edu	37	3	48310173	48310173	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:48310173C>T	uc003csl.3	+	4	1058	c.992C>T	c.(991-993)TCG>TTG	p.S331L	ZNF589_uc010hjt.1_Missense_Mutation_p.S328L|ZNF589_uc003csn.2_RNA|ZNF589_uc011bbg.1_Intron|ZNF589_uc003csm.2_Intron	NM_016089	NP_057173	Q86UQ0	ZN589_HUMAN	zinc finger protein 589	331					regulation of transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000649)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		AGGGAGAAATCGTTTATGTGC	0.502													28	81					0	0	0.008361	0	0
TMEM89	440955	broad.mit.edu	37	3	48659027	48659027	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:48659027G>A	uc011bbo.1	-	1	163	c.163C>T	c.(163-165)CCT>TCT	p.P55S		NM_001008269	NP_001008270	A2RUT3	TMM89_HUMAN	transmembrane protein 89 precursor	55	Extracellular (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(193;0.000286)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)		CAGTAGCCAGGACAGCTCAGG	0.642													10	37					0	0	0.010729	0	0
USP19	10869	broad.mit.edu	37	3	49156456	49156456	+	Silent	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:49156456T>C	uc003cwd.1	-	2	284	c.123A>G	c.(121-123)AAA>AAG	p.K41K	USP19_uc003cwa.2_5'Flank|USP19_uc003cvz.3_Silent_p.K41K|USP19_uc011bcg.1_Silent_p.K41K|USP19_uc003cwb.2_Silent_p.K41K|USP19_uc003cwc.1_5'Flank|USP19_uc011bch.1_Silent_p.K41K|USP19_uc011bci.1_Silent_p.K41K	NM_006677	NP_006668	O94966	UBP19_HUMAN	ubiquitin thioesterase 19	41	Cytoplasmic (Potential).				ER-associated protein catabolic process|positive regulation of cell cycle process|protein deubiquitination|regulation of protein stability|response to endoplasmic reticulum stress|skeletal muscle atrophy	endoplasmic reticulum membrane|integral to membrane	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(4)|breast(2)|lung(1)	7				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CACTCCCACCTTTCCTAGGAT	0.517													26	108					0	0	0.008361	0	0
RBM6	10180	broad.mit.edu	37	3	50097165	50097165	+	Silent	SNP	C	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:50097165C>A	uc003cyc.2	+	11	2347	c.2214C>A	c.(2212-2214)GCC>GCA	p.A738A	RBM6_uc010hlc.1_Silent_p.A257A|RBM6_uc003cyd.2_Silent_p.A216A|RBM6_uc003cye.2_Silent_p.A216A|RBM6_uc011bdi.1_Silent_p.A80A|RBM6_uc010hld.1_RNA|RBM6_uc010hle.1_RNA|RBM6_uc010hlf.1_RNA	NM_005777	NP_005768	P78332	RBM6_HUMAN	RNA binding motif protein 6	738					RNA processing	nucleus	DNA binding|nucleotide binding|RNA binding|zinc ion binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;6.81e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0084)|Kidney(197;0.00977)		TAAACCTGGCCACTGGAAAAC	0.468													20	43					1.28384e-07	1.32603e-07	0.012319	1	0
CACNA2D2	9254	broad.mit.edu	37	3	50418224	50418224	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:50418224C>T	uc003daq.2	-	8	835	c.797G>A	c.(796-798)CGA>CAA	p.R266Q	CACNA2D2_uc003dap.2_Missense_Mutation_p.R266Q	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	266	Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	CTTGGGGGCTCGCCACGGGGT	0.647													3	5					0	0	0.009096	0	0
DOCK3	1795	broad.mit.edu	37	3	51399296	51399296	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:51399296G>A	uc011bds.1	+	48	5036	c.5013G>A	c.(5011-5013)ATG>ATA	p.M1671I		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1671						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		ACAGCCCCATGAACTTGATGG	0.562													7	10					0	0	0.004482	0	0
GRM2	2912	broad.mit.edu	37	3	51743182	51743182	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:51743182C>T	uc010hlv.2	+	2	422	c.183C>T	c.(181-183)CGC>CGT	p.R61R	GRM2_uc003dbo.3_Intron|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	61	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	GCATCCAGCGCCTGGAGGCCA	0.637													30	68					0	0	0.008361	0	0
DNAH1	25981	broad.mit.edu	37	3	52422243	52422243	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:52422243C>T	uc011bef.1	+	57	9325	c.9064C>T	c.(9064-9066)CAG>TAG	p.Q3022*	DNAH1_uc003ddv.2_5'UTR	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	3022	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		TGAAGAGTTCCAGCCAGCCAC	0.567													3	16					0	0	0.009096	0	0
ITIH1	3697	broad.mit.edu	37	3	52819165	52819165	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:52819165G>A	uc003dfs.2	+	12	1537	c.1513G>A	c.(1513-1515)GAA>AAA	p.E505K	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_Missense_Mutation_p.E106K|ITIH1_uc010hmo.1_Missense_Mutation_p.E59K|ITIH1_uc003dfu.2_5'Flank	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	505	Hyaluronan-binding.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		ACAGTACTACGAAGGCTCAGA	0.562													35	100					0	0	0.008740	0	0
FOXP1	27086	broad.mit.edu	37	3	71008430	71008430	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:71008430C>T	uc003dol.2	-	17	2325	c.2002G>A	c.(2002-2004)GAA>AAA	p.E668K	FOXP1_uc003dom.2_Missense_Mutation_p.E592K|FOXP1_uc003don.2_RNA|FOXP1_uc003doo.2_Missense_Mutation_p.E667K|FOXP1_uc003dop.2_Missense_Mutation_p.E668K|FOXP1_uc003doq.1_Intron|FOXP1_uc003doi.2_Missense_Mutation_p.E568K|FOXP1_uc003doj.2_Missense_Mutation_p.E568K|FOXP1_uc003dok.2_Missense_Mutation_p.E481K	NM_032682	NP_116071	Q9H334	FOXP1_HUMAN	forkhead box P1 isoform 1	668					cardiac muscle cell differentiation|embryo development|immunoglobulin V(D)J recombination|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of immunoglobulin production|positive regulation of mesenchymal cell proliferation|pre-B cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|skeletal muscle tissue development|smooth muscle tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(201;4.62e-05)|Prostate(10;0.0181)|Hepatocellular(537;0.186)|Myeloproliferative disorder(1037;0.209)		BRCA - Breast invasive adenocarcinoma(55;1.17e-05)|Epithelial(33;1.39e-05)|LUSC - Lung squamous cell carcinoma(21;2.35e-05)|Lung(16;4.26e-05)		GGTTCATCTTCGTAATCTCTG	0.478			T	PAX5	ALL								40	123					0	0	0.014410	0	0
CNTN3	5067	broad.mit.edu	37	3	74347335	74347335	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:74347335G>A	uc003dpm.1	-	17	2254	c.2174C>T	c.(2173-2175)CCT>CTT	p.P725L		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	725	Fibronectin type-III 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		TAGTTCTTCAGGGACTGGCTA	0.453													8	11					0	0	0.003080	0	0
ROBO1	6091	broad.mit.edu	37	3	78656102	78656102	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:78656102G>A	uc003dqe.2	-	29	4733	c.4525C>T	c.(4525-4527)CCA>TCA	p.P1509S	ROBO1_uc003dqb.2_Missense_Mutation_p.P1470S|ROBO1_uc003dqc.2_Missense_Mutation_p.P1409S|ROBO1_uc003dqd.2_Missense_Mutation_p.P1464S|ROBO1_uc010hoh.2_Missense_Mutation_p.P701S|ROBO1_uc011bgl.1_Missense_Mutation_p.P1081S	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	1509	Cytoplasmic (Potential).				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		GGGAGTTTTGGCACCACTACA	0.473													19	68					0	0	0.007413	0	0
OR5H1	26341	broad.mit.edu	37	3	97852022	97852022	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:97852022G>A	uc011bgt.1	+	1	481	c.481G>A	c.(481-483)GGA>AGA	p.G161R		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	161	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						AATCCATGAAGGATTTTTATT	0.358													3	21					0	0	0.004672	0	0
GPR128	84873	broad.mit.edu	37	3	100352130	100352130	+	Missense_Mutation	SNP	G	A	A	rs143646459		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:100352130G>A	uc003duc.2	+	4	624	c.356G>A	c.(355-357)CGG>CAG	p.R119Q	GPR128_uc011bhc.1_5'Flank	NM_032787	NP_116176	Q96K78	GP128_HUMAN	G protein-coupled receptor 128 precursor	119	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(1)	4						ATGGCAGTCCGGTTGTGCAGT	0.274													8	48					0	0	0.004482	0	0
CBLB	868	broad.mit.edu	37	3	105378047	105378048	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:105378047_105378048GG>AA	uc003dwc.2	-	19	3037_3038	c.2715_2716CC>TT	c.(2713-2718)CCCCCT>CCTTCT	p.P906S	CBLB_uc003dwa.2_Missense_Mutation_p.P121S|CBLB_uc011bhi.1_Missense_Mutation_p.P884S	NM_170662	NP_733762	Q13191	CBLB_HUMAN	Cas-Br-M (murine) ecotropic retroviral	906	Pro-rich.|Interaction with SH3KBP1.				cell surface receptor linked signaling pathway|NLS-bearing substrate import into nucleus	cytoplasm|nucleus	calcium ion binding|ligase activity|signal transducer activity|zinc ion binding			lung(4)|ovary(3)|breast(1)|skin(1)	9						CGTGGTTTAGGGGGTCTGGCTG	0.431			Mis S		AML								5	25					0	0	0.004672	0	0
MYH15	22989	broad.mit.edu	37	3	108219053	108219053	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:108219053G>A	uc003dxa.1	-	5	525	c.468C>T	c.(466-468)GTC>GTT	p.V156V		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	156	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						AGGCGGCCATGACTTCTTTCT	0.468													11	28					0	0	0.020292	0	0
MORC1	27136	broad.mit.edu	37	3	108682317	108682317	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:108682317C>T	uc003dxl.2	-	27	2830	c.2743G>A	c.(2743-2745)GAT>AAT	p.D915N	MORC1_uc011bhn.1_Missense_Mutation_p.D894N	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	915	Potential.				cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TTCAGCTTATCCTCAGAGATT	0.294													13	42					0	0	0.016723	0	0
PVRL3	25945	broad.mit.edu	37	3	110837599	110837599	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:110837599C>T	uc003dxt.1	+	3	599	c.599C>T	c.(598-600)CCC>CTC	p.P200L	PVRL3_uc003dxu.1_Missense_Mutation_p.P177L	NM_015480	NP_056295	Q9NQS3	PVRL3_HUMAN	poliovirus receptor-related 3 precursor	200	Extracellular (Potential).|Ig-like C2-type 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane	cell adhesion molecule binding|protein homodimerization activity			upper_aerodigestive_tract(2)	2						ACTGGAAAACCCGTTGCACAT	0.438													8	29					0	0	0.004482	0	0
PHLDB2	90102	broad.mit.edu	37	3	111603001	111603001	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:111603001C>T	uc010hqa.2	+	2	488	c.77C>T	c.(76-78)TCT>TTT	p.S26F	PHLDB2_uc003dyc.2_Missense_Mutation_p.S53F|PHLDB2_uc003dyd.2_Missense_Mutation_p.S26F|PHLDB2_uc003dyg.2_Missense_Mutation_p.S26F|PHLDB2_uc003dyh.2_Missense_Mutation_p.S26F|PHLDB2_uc003dye.3_Missense_Mutation_p.S26F|PHLDB2_uc003dyf.3_Missense_Mutation_p.S26F	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	26						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						GTGGTGCATTCTGTTGAGAAC	0.408													31	69					0	0	0.012213	0	0
SLC9A10	285335	broad.mit.edu	37	3	111898498	111898498	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:111898498C>T	uc003dyu.2	-	23	3021	c.2799G>A	c.(2797-2799)AAG>AAA	p.K933K	SLC9A10_uc011bhu.1_Silent_p.K196K|SLC9A10_uc010hqc.2_Silent_p.K885K	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	933	cNMP.				cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						AATCTTTCTCCTTTGACTCCA	0.348													13	23					0	0	0.020292	0	0
MYLK	4638	broad.mit.edu	37	3	123385168	123385168	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:123385168G>A	uc003ego.2	-	22	4011	c.3729C>T	c.(3727-3729)TTC>TTT	p.F1243F	MYLK_uc010hrr.2_5'Flank|MYLK_uc011bjv.1_Silent_p.F43F|MYLK_uc011bjw.1_Silent_p.F1243F|MYLK_uc003egp.2_Silent_p.F1174F|MYLK_uc003egq.2_Silent_p.F1243F|MYLK_uc003egr.2_Silent_p.F1174F|MYLK_uc003egs.2_Silent_p.F1067F	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	1243	Actin-binding (calcium/calmodulin- insensitive) (By similarity).|Ig-like C2-type 8.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		GGTCCTCAGGGAACTGGATGA	0.557													7	42					0	0	0.004482	0	0
MYLK	4638	broad.mit.edu	37	3	123452773	123452773	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:123452773C>T	uc003ego.2	-	10	1352	c.1070G>A	c.(1069-1071)AGA>AAA	p.R357K	MYLK_uc011bjw.1_Missense_Mutation_p.R357K|MYLK_uc003egp.2_Missense_Mutation_p.R357K|MYLK_uc003egq.2_Missense_Mutation_p.R357K|MYLK_uc003egr.2_Missense_Mutation_p.R357K|MYLK_uc003egs.2_Missense_Mutation_p.R181K	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	357					aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		GCCTGGTGCTCTTGGTTCCGG	0.647													40	108					0	0	0.009718	0	0
MYLK	4638	broad.mit.edu	37	3	123456314	123456314	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:123456314C>T	uc003ego.2	-	8	947	c.665G>A	c.(664-666)GGA>GAA	p.G222E	MYLK_uc011bjw.1_Missense_Mutation_p.G222E|MYLK_uc003egp.2_Missense_Mutation_p.G222E|MYLK_uc003egq.2_Missense_Mutation_p.G222E|MYLK_uc003egr.2_Missense_Mutation_p.G222E|MYLK_uc003egs.2_Missense_Mutation_p.G46E|MYLK_uc010hrs.1_Missense_Mutation_p.G222E	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	222	Ig-like C2-type 2.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		TTGGTTGACTCCATGGATTTC	0.547													35	101					0	0	0.015359	0	0
KALRN	8997	broad.mit.edu	37	3	124390539	124390539	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:124390539G>A	uc003ehg.2	+	48	6860	c.6733G>A	c.(6733-6735)GAA>AAA	p.E2245K	KALRN_uc003ehi.2_Missense_Mutation_p.E586K|KALRN_uc003ehk.2_Missense_Mutation_p.E548K|KALRN_uc011bjz.1_Missense_Mutation_p.E337K	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2244					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						TCAACGGAAAGAAAGGAGCAC	0.552													27	74					0	0	0.012213	0	0
KALRN	8997	broad.mit.edu	37	3	124390670	124390670	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:124390670C>T	uc003ehg.2	+	48	6991	c.6864C>T	c.(6862-6864)CCC>CCT	p.P2288P	KALRN_uc003ehi.2_Silent_p.P629P|KALRN_uc003ehk.2_Silent_p.P591P|KALRN_uc011bjz.1_Silent_p.P380P	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2287					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CTCTGCCTCCCCTGAAGATAT	0.577													35	77					0	0	0.013726	0	0
GP9	2815	broad.mit.edu	37	3	128780637	128780637	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:128780637G>A	uc003elm.2	+	3	242	c.55G>A	c.(55-57)GAC>AAC	p.D19N		NM_000174	NP_000165	P14770	GPIX_HUMAN	glycoprotein IX (platelet) precursor	19	Extracellular (Potential).|LRRNT.				blood coagulation, intrinsic pathway|cell adhesion|platelet activation	integral to plasma membrane	protein binding				0					Quinine(DB00468)	GGCCACCAAGGACTGCCCCAG	0.711													6	22					0	0	0.001984	0	0
RHO	6010	broad.mit.edu	37	3	129247891	129247891	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:129247891C>T	uc003emt.2	+	1	410	c.315C>T	c.(313-315)TTC>TTT	p.F105F		NM_000539	NP_000530	P08100	OPSD_HUMAN	rhodopsin	105	Extracellular.				protein-chromophore linkage|rhodopsin mediated signaling pathway	Golgi apparatus|integral to plasma membrane|photoreceptor inner segment membrane|photoreceptor outer segment membrane	G-protein coupled receptor activity|metal ion binding|photoreceptor activity|protein binding				0		all_neural(597;0.0227)|Myeloproliferative disorder(1037;0.0255)|Prostate(884;0.183)		GBM - Glioblastoma multiforme(114;2.58e-05)|Lung(219;0.0234)	Halothane(DB01159)	ACTTCGTCTTCGGGCCCACAG	0.597													35	87					0	0	0.021022	0	0
TMEM108	66000	broad.mit.edu	37	3	133114707	133114707	+	Splice_Site	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:133114707G>A	uc003eph.2	+	6	1880	c.1606_splice	c.e6-1	p.D536_splice	TMEM108_uc003epi.2_Splice_Site_p.D536_splice|TMEM108_uc003epk.2_Splice_Site_p.D66_splice|TMEM108_uc003epm.2_Splice_Site_p.D487_splice	NM_023943	NP_076432	Q6UXF1	TM108_HUMAN	transmembrane protein 108 precursor							integral to membrane				ovary(2)|skin(2)	4						TCTCTTCCCAGGACCAGCTCT	0.498													19	59					0	0	0.007413	0	0
IGSF10	285313	broad.mit.edu	37	3	151155254	151155254	+	Silent	SNP	T	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:151155254T>G	uc011bod.1	-	6	7095	c.7095A>C	c.(7093-7095)CCA>CCC	p.P2365P	IGSF10_uc011bob.1_Silent_p.P392P|IGSF10_uc011boc.1_Silent_p.P344P	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	2365	Ig-like C2-type 10.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TTTCAGGTGGTGGGTTACCAT	0.378													26	47					0	0	0.007291	0	0
AADACL2	344752	broad.mit.edu	37	3	151458570	151458570	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:151458570G>A	uc003ezc.2	+	2	395	c.275G>A	c.(274-276)CGA>CAA	p.R92Q	AADACL2_uc010hvn.2_Intron	NM_207365	NP_997248	Q6P093	ADCL2_HUMAN	arylacetamide deacetylase-like 2 precursor	92						extracellular region|integral to membrane	carboxylesterase activity				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			ATTCCAGTACGATTGTACTTG	0.378													9	17					0	0	0.004482	0	0
AADAC	13	broad.mit.edu	37	3	151545698	151545698	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:151545698G>A	uc003eze.2	+	5	1028	c.938G>A	c.(937-939)GGG>GAG	p.G313E		NM_001086	NP_001077	P22760	AAAD_HUMAN	arylacetamide deacetylase	313	Lumenal (Potential).				positive regulation of triglyceride catabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	carboxylesterase activity|deacetylase activity|serine hydrolase activity|triglyceride lipase activity			skin(2)	2		Myeloproliferative disorder(1037;0.0255)|all_neural(597;0.112)	LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			AAATATCCAGGGTTCCTAGAT	0.418													6	30					0	0	0.001168	0	0
SUCNR1	56670	broad.mit.edu	37	3	151598398	151598398	+	Nonsense_Mutation	SNP	A	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:151598398A>T	uc003ezf.1	+	3	166	c.67A>T	c.(67-69)AAG>TAG	p.K23*		NM_033050	NP_149039	Q9BXA5	SUCR1_HUMAN	succinate receptor 1	23	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)		Succinic acid(DB00139)	TGCCCTGGAAAAGTACTACCT	0.413													15	51					0	0	0.003163	0	0
TMEM14E	645843	broad.mit.edu	37	3	152058520	152058520	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:152058520C>T	uc010hvo.2	-	1	260	c.174G>A	c.(172-174)CGG>CGA	p.R58R	MBNL1_uc003ezh.2_Intron|MBNL1_uc003ezi.2_Intron|MBNL1_uc003ezj.2_Intron|MBNL1_uc003ezm.2_Intron|MBNL1_uc003ezl.2_Intron|MBNL1_uc003ezp.2_Intron|MBNL1_uc003ezn.2_Intron|MBNL1_uc003ezo.2_Intron	NM_001123228	NP_001116700	Q6UXP3	TM14E_HUMAN	transmembrane protein 14E	58						integral to membrane					0						CCTTTGGATTCCGTGATGGCT	0.458													6	11					0	0	0.001168	0	0
DHX36	170506	broad.mit.edu	37	3	153998449	153998449	+	Missense_Mutation	SNP	T	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:153998449T>A	uc003ezy.3	-	22	2567	c.2486A>T	c.(2485-2487)AAG>ATG	p.K829M	DHX36_uc010hvq.2_Missense_Mutation_p.K815M|DHX36_uc003ezz.3_Missense_Mutation_p.K800M	NM_020865	NP_065916	Q9H2U1	DHX36_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 36	829						cytoplasm|nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			TTTAATTATCTTCTCATTATC	0.323													24	78					0	0	0.004656	0	0
SLC33A1	9197	broad.mit.edu	37	3	155571302	155571302	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:155571302A>T	uc003fan.3	-	1	866	c.485T>A	c.(484-486)GTG>GAG	p.V162E	SLC33A1_uc003fao.1_Missense_Mutation_p.V162E	NM_004733	NP_004724	O00400	ACATN_HUMAN	acetyl-coenzyme A transporter	162	Helical; (Potential).				cell death|transmembrane transport	endoplasmic reticulum membrane|Golgi membrane|integral to plasma membrane|membrane fraction	acetyl-CoA transporter activity			ovary(2)|large_intestine(1)|pancreas(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			CAAACGGTCCACCTGAGTGGA	0.473													21	43					0	0	0.008871	0	0
IQCJ	654502	broad.mit.edu	37	3	158983184	158983184	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:158983184C>T	uc003fcp.1	+	5	577	c.472C>T	c.(472-474)CTC>TTC	p.L158F	SCHIP1_uc003fcq.1_Intron|SCHIP1_uc003fcr.1_Intron|IQCJ_uc010hvy.1_Missense_Mutation_p.L131F	NM_001042705	NP_001036170	Q1A5X6	IQCJ_HUMAN	IQ motif containing J isoform CaMBPv1	158											0			LUSC - Lung squamous cell carcinoma(72;0.00523)|Lung(72;0.00534)			TTTTCTCACCCTCCAGTGAAT	0.473													5	23					0	0	0.014758	0	0
SI	6476	broad.mit.edu	37	3	164750406	164750406	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:164750406G>A	uc003fei.2	-	24	2702	c.2640C>T	c.(2638-2640)ATC>ATT	p.I880I		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	880	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TCAACCCAAGGATTTTTACAG	0.353										HNSCC(35;0.089)			6	7					0	0	0.001168	0	0
LRRC31	79782	broad.mit.edu	37	3	169579543	169579543	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:169579543G>A	uc003fgc.1	-	2	311	c.234C>T	c.(232-234)TTC>TTT	p.F78F	LRRC31_uc010hwp.1_Silent_p.F78F	NM_024727	NP_079003	Q6UY01	LRC31_HUMAN	leucine rich repeat containing 31	78										ovary(2)|skin(1)	3	all_cancers(22;2.76e-22)|all_epithelial(15;4.73e-27)|all_lung(20;9.24e-17)|Lung NSC(18;3.85e-16)|Ovarian(172;0.000223)|Breast(254;0.197)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00943)			GCTTCTGCAGGAAATGCTCAT	0.403													40	73					0	0	0.006999	0	0
SLC7A14	57709	broad.mit.edu	37	3	170198172	170198172	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:170198172G>A	uc003fgz.2	-	7	2215	c.1899C>T	c.(1897-1899)CCC>CCT	p.P633P	CLDN11_uc011bpt.1_Intron|uc003fha.1_Intron	NM_020949	NP_066000	Q8TBB6	S7A14_HUMAN	solute carrier family 7 (cationic amino acid	633	Helical; (Potential).					integral to membrane	amino acid transmembrane transporter activity			ovary(2)|upper_aerodigestive_tract(1)|liver(1)|central_nervous_system(1)	5	all_cancers(22;2.41e-22)|all_epithelial(15;4.2e-27)|all_lung(20;1.17e-16)|Lung NSC(18;4.91e-16)|Ovarian(172;0.000902)|Breast(254;0.137)		Lung(28;6.23e-13)|LUSC - Lung squamous cell carcinoma(14;1.48e-12)			CAGGCACAAAGGGGAGGCAAG	0.547													24	137					0	0	0.018920	0	0
FNDC3B	64778	broad.mit.edu	37	3	172061888	172061888	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:172061888C>T	uc003fhy.2	+	19	2262	c.2090C>T	c.(2089-2091)TCG>TTG	p.S697L	FNDC3B_uc003fhz.3_Missense_Mutation_p.S697L	NM_022763	NP_073600	Q53EP0	FND3B_HUMAN	fibronectin type III domain containing 3B	697	Fibronectin type-III 5.					endoplasmic reticulum|integral to membrane				ovary(2)|breast(1)	3	all_cancers(22;1.01e-18)|Ovarian(172;0.00167)|Breast(254;0.165)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)	GBM - Glioblastoma multiforme(1;0.0494)		GTTCCTGCATCGGAAAGTGGC	0.493													25	87					0	0	0.021523	0	0
KCNMB3	27094	broad.mit.edu	37	3	178968596	178968596	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:178968596C>T	uc003fjm.2	-	2	707	c.195G>A	c.(193-195)ATG>ATA	p.M65I	KCNMB3_uc003fjl.3_RNA|KCNMB3_uc011bqc.1_Missense_Mutation_p.M63I|KCNMB3_uc003fjn.2_Missense_Mutation_p.M61I|KCNMB3_uc003fjo.2_Missense_Mutation_p.M43I|KCNMB3_uc003fjp.1_Missense_Mutation_p.M63I	NM_014407	NP_055222	Q9NPA1	KCMB3_HUMAN	calcium-activated potassium channel beta 3	65	Helical; Name=1; (Potential).				detection of calcium ion|platelet activation|regulation of action potential in neuron	voltage-gated potassium channel complex	calcium-activated potassium channel activity|potassium channel regulator activity				0	all_cancers(143;5.6e-17)|Ovarian(172;0.0172)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;2.41e-27)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.03)			AGAAGCCCATCATGGCAAACC	0.488													33	78					0	0	0.013726	0	0
HTR3D	200909	broad.mit.edu	37	3	183756207	183756207	+	Silent	SNP	C	T	T	rs139778852		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:183756207C>T	uc011bqv.1	+	7	930	c.930C>T	c.(928-930)TTC>TTT	p.F310F	HTR3D_uc003fmj.2_Silent_p.F135F|HTR3D_uc011bqu.1_Silent_p.F260F|HTR3D_uc010hxp.2_Silent_p.F89F	NM_001163646	NP_001157118	Q70Z44	5HT3D_HUMAN	5-hydroxytryptamine receptor 3 subunit D isoform	310	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	extracellular ligand-gated ion channel activity|receptor activity				0	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;6.23e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			GTGTCTACTTCGCCCTGTGCC	0.587													25	60					0	0	0.006320	0	0
HTR3E	285242	broad.mit.edu	37	3	183823660	183823660	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:183823660G>A	uc010hxq.2	+	7	1294	c.828G>A	c.(826-828)GGG>GGA	p.G276G	HTR3E_uc003fml.3_Silent_p.G261G|HTR3E_uc003fmm.2_Silent_p.G291G|HTR3E_uc010hxr.2_Silent_p.G302G|HTR3E_uc003fmn.2_Silent_p.G276G	NM_182589	NP_872395	A5X5Y0	5HT3E_HUMAN	5-hydroxytryptamine receptor 3 subunit E	276	Cytoplasmic (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(143;1.46e-10)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			TGAAAAGTGGGAATCGTGTCC	0.552													23	93					0	0	0.014323	0	0
HRG	3273	broad.mit.edu	37	3	186394924	186394924	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:186394924C>T	uc003fqq.2	+	7	853	c.830C>T	c.(829-831)CCA>CTA	p.P277L		NM_000412	NP_000403	P04196	HRG_HUMAN	histidine-rich glycoprotein precursor	277	Pro-rich.				fibrinolysis|platelet activation|platelet degranulation	extracellular region|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding			ovary(1)|central_nervous_system(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0683)		ACCAAGCCTCCATTCAAGCCC	0.527													22	77					0	0	0.014323	0	0
ST6GAL1	6480	broad.mit.edu	37	3	186760642	186760642	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:186760642C>T	uc003frb.2	+	4	583	c.151C>T	c.(151-153)CTG>TTG	p.L51L	ST6GAL1_uc003frc.2_Intron|ST6GAL1_uc003frd.2_Silent_p.L51L	NM_173216	NP_775323	P15907	SIAT1_HUMAN	ST6 beta-galactosamide	51	Lumenal (Potential).				humoral immune response|post-translational protein modification|protein N-linked glycosylation via asparagine	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			central_nervous_system(1)	1	all_cancers(143;2.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;8.53e-19)	GBM - Glioblastoma multiforme(93;0.0939)		GTTAAAGAGTCTGGGGAAATT	0.507													22	56					0	0	0.010504	0	0
LEPREL1	55214	broad.mit.edu	37	3	189712007	189712007	+	Silent	SNP	G	A	A	rs114077778	by1000genomes	TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:189712007G>A	uc011bsk.1	-	3	1087	c.699C>T	c.(697-699)TTC>TTT	p.F233F	LEPREL1_uc003fsg.2_Silent_p.F52F	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	233	TPR 3.				collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	AGGCTTGTTCGAAGTGCCTGA	0.388													8	31					0	0	0.004482	0	0
PYDC2	152138	broad.mit.edu	37	3	191179158	191179158	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:191179158G>A	uc011bso.1	+	1	207	c.207G>A	c.(205-207)GGG>GGA	p.G69G		NM_001083308	NP_001076777	Q56P42	PYDC2_HUMAN	pyrin domain containing 2	69	DAPIN.					cytoplasm|nucleus					0						ACTGGGCAGGGATGGCAGCCA	0.527													22	66					0	0	0.006320	0	0
ATP13A4	84239	broad.mit.edu	37	3	193174929	193174929	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:193174929C>T	uc003ftd.2	-	16	1883	c.1775G>A	c.(1774-1776)GGA>GAA	p.G592E	ATP13A4_uc003fte.1_Missense_Mutation_p.G592E|ATP13A4_uc011bsr.1_Missense_Mutation_p.G63E|ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	592	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		GATTGCAATTCCTTCCACTGG	0.473													28	63					0	0	0.019004	0	0
ATP13A4	84239	broad.mit.edu	37	3	193201733	193201733	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:193201733C>T	uc003ftd.2	-	8	908	c.800G>A	c.(799-801)GGG>GAG	p.G267E	ATP13A4_uc003fte.1_Missense_Mutation_p.G267E|ATP13A4_uc011bsr.1_5'UTR	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	267	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		ACCTTTTCTCCCACATACAGA	0.338													28	84					0	0	0.008361	0	0
FYTTD1	84248	broad.mit.edu	37	3	197505288	197505288	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:197505288C>T	uc003fyi.2	+	8	1030	c.811C>T	c.(811-813)CCT>TCT	p.P271S	FYTTD1_uc011bui.1_Missense_Mutation_p.P245S|FYTTD1_uc011buj.1_RNA|FYTTD1_uc011buk.1_Missense_Mutation_p.P204S	NM_032288	NP_115664	Q96QD9	UIF_HUMAN	forty-two-three domain containing 1 isoform 1	271					mRNA export from nucleus	nuclear speck	mRNA binding|protein binding				0	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)	Lung NSC(153;0.132)	Epithelial(36;2.19e-23)|all cancers(36;1.39e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.21e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(93;0.175)		CAAGAAAGTTCCTAAAGGTGT	0.348													8	30					0	0	0.004482	0	0
ZBTB49	166793	broad.mit.edu	37	4	4322723	4322723	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:4322723C>T	uc003ghu.2	+	8	2153	c.1978C>T	c.(1978-1980)CAA>TAA	p.Q660*	uc003ghw.2_5'Flank|ZBTB49_uc003ghv.2_Nonsense_Mutation_p.Q143*|ZBTB49_uc010icy.2_RNA|ZBTB49_uc010icz.2_Nonsense_Mutation_p.Q238*	NM_145291	NP_660334	Q6ZSB9	ZBT49_HUMAN	zinc finger protein 509	660					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2						GTCCATGATCCAACCTCATGG	0.512													17	41					0	0	0.004990	0	0
EVC2	132884	broad.mit.edu	37	4	5667321	5667321	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:5667321G>A	uc003gij.2	-	8	980	c.926C>T	c.(925-927)TCC>TTC	p.S309F	EVC2_uc011bwb.1_5'UTR|EVC2_uc003gik.2_Missense_Mutation_p.S229F	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	309	Helical; (Potential).					integral to membrane				large_intestine(3)|ovary(2)	5						CAGCACAAGGGAGAGGAGGAA	0.577													15	35					0	0	0.020292	0	0
SH3TC1	54436	broad.mit.edu	37	4	8229539	8229539	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:8229539C>T	uc003gkv.3	+	12	2219	c.2118C>T	c.(2116-2118)CTC>CTT	p.L706L	SH3TC1_uc003gkw.3_Silent_p.L630L|SH3TC1_uc003gkx.3_RNA|SH3TC1_uc003gky.2_5'Flank	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	706							binding			large_intestine(2)|pancreas(1)	3						CCGCGTGGCTCTCAGACTGCT	0.652													18	52					0	0	0.006122	0	0
HS3ST1	9957	broad.mit.edu	37	4	11400857	11400857	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:11400857C>T	uc003gmq.2	-	2	1096	c.773G>A	c.(772-774)CGG>CAG	p.R258Q		NM_005114	NP_005105	O14792	HS3S1_HUMAN	heparan sulfate D-glucosaminyl	258						Golgi lumen|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			skin(1)	1						GCCGCTGTCCCGCAGGCAGTA	0.512													18	49					0	0	0.004990	0	0
GPR125	166647	broad.mit.edu	37	4	22446706	22446706	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:22446706T>C	uc003gqm.1	-	6	861	c.596A>G	c.(595-597)CAT>CGT	p.H199R	GPR125_uc010ieo.1_Missense_Mutation_p.H73R|GPR125_uc003gqn.1_5'Flank|GPR125_uc003gqo.2_Missense_Mutation_p.H199R	NM_145290	NP_660333	Q8IWK6	GP125_HUMAN	G protein-coupled receptor 125 precursor	199	Extracellular (Potential).|LRRCT.				neuropeptide signaling pathway	integral to membrane	G-protein coupled receptor activity			skin(1)	1		Breast(46;0.198)				TACCCAGCGATGCATCCACAG	0.433													9	11					0	0	0.006214	0	0
CCDC149	91050	broad.mit.edu	37	4	24838983	24838983	+	Missense_Mutation	SNP	C	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:24838983C>G	uc011bxr.1	-	7	673	c.529G>C	c.(529-531)GAG>CAG	p.E177Q	CCDC149_uc003grc.2_Missense_Mutation_p.E177Q|CCDC149_uc003grb.2_RNA|CCDC149_uc003grd.2_Intron|CCDC149_uc003gre.2_Missense_Mutation_p.E122Q|CCDC149_uc011bxq.1_Missense_Mutation_p.E50Q	NM_173463	NP_775734	B4DZG3	B4DZG3_HUMAN	coiled-coil domain containing 149 isoform 1	177											0		Breast(46;0.173)				TCCTGAAGCTCGTCCACAGAA	0.522													18	48					0	0	0.008871	0	0
CCKAR	886	broad.mit.edu	37	4	26483489	26483489	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:26483489G>A	uc003gse.1	-	5	1211	c.1058C>T	c.(1057-1059)TCC>TTC	p.S353F		NM_000730	NP_000721	P32238	CCKAR_HUMAN	cholecystokinin A receptor	353	Helical; Name=7; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|elevation of cytosolic calcium ion concentration|response to nutrient	integral to plasma membrane	cholecystokinin receptor activity			lung(3)|pancreas(1)	4		Breast(46;0.0503)			Ceruletide(DB00403)	GAGGATGAAGGAAATGGGGGT	0.612													26	63					0	0	0.005443	0	0
ARAP2	116984	broad.mit.edu	37	4	36212084	36212084	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:36212084G>A	uc003gsq.1	-	6	1753	c.1415C>T	c.(1414-1416)CCC>CTC	p.P472L	ARAP2_uc003gsr.1_Missense_Mutation_p.P472L	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	472					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						GCAGGCATAGGGAGATATTGC	0.413													7	20					0	0	0.001984	0	0
PGM2	55276	broad.mit.edu	37	4	37847295	37847295	+	Missense_Mutation	SNP	T	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:37847295T>G	uc011byb.1	+	8	1024	c.951T>G	c.(949-951)ATT>ATG	p.I317M	PGM2_uc011bya.1_Missense_Mutation_p.I178M|PGM2_uc011byc.1_Missense_Mutation_p.I157M	NM_018290	NP_060760	Q96G03	PGM2_HUMAN	phosphoglucomutase 2	317					glucose 1-phosphate metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	magnesium ion binding|phosphoglucomutase activity|phosphopentomutase activity			ovary(1)	1						AGGCCAGAATTGTTTTAGCTA	0.338													31	75					0	0	0.017118	0	0
WDR19	57728	broad.mit.edu	37	4	39276558	39276558	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:39276558G>A	uc003gtv.2	+	33	3850	c.3696G>A	c.(3694-3696)AAG>AAA	p.K1232K	WDR19_uc011byi.1_Silent_p.K1072K|WDR19_uc003gtw.1_Silent_p.K829K	NM_025132	NP_079408	Q8NEZ3	WDR19_HUMAN	WD repeat domain 19	1232					cell projection organization	microtubule basal body|motile cilium|photoreceptor connecting cilium	binding			large_intestine(1)	1						AATACAAAAAGAAGATCGAGG	0.443													16	25					0	0	0.004007	0	0
CNGA1	1259	broad.mit.edu	37	4	47939215	47939215	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:47939215C>T	uc003gxt.3	-	11	1562	c.1296G>A	c.(1294-1296)AAG>AAA	p.K432K	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Silent_p.K501K	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	432	Extracellular (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						TAATAACCCTCTTTTCCATAT	0.343													15	61					0	0	0.003163	0	0
TXK	7294	broad.mit.edu	37	4	48073661	48073661	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:48073661C>T	uc003gxx.3	-	14	1474	c.1388G>A	c.(1387-1389)GGA>GAA	p.G463E	TXK_uc010igj.2_RNA|TXK_uc011bzj.1_Missense_Mutation_p.G150E	NM_003328	NP_003319	P42681	TXK_HUMAN	TXK tyrosine kinase	463	Protein kinase.					cytoplasm	ATP binding|non-membrane spanning protein tyrosine kinase activity				0						AGGCATTTTTCCTTCTGTAAA	0.383													22	87					0	0	0.014323	0	0
SCFD2	152579	broad.mit.edu	37	4	54140030	54140030	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:54140030C>T	uc003gzu.2	-	4	1408	c.1274G>A	c.(1273-1275)TGG>TAG	p.W425*	SCFD2_uc010igm.2_Nonsense_Mutation_p.W425*	NM_152540	NP_689753	Q8WU76	SCFD2_HUMAN	sec1 family domain containing 2	425					protein transport|vesicle docking involved in exocytosis					ovary(2)|pancreas(1)	3			GBM - Glioblastoma multiforme(3;1.07e-26)|LUSC - Lung squamous cell carcinoma(32;0.0134)			AAAGTTGTCCCACTTGGCAGT	0.448													23	41					0	0	0.016522	0	0
KDR	3791	broad.mit.edu	37	4	55955863	55955863	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:55955863G>A	uc003has.2	-	24	3601	c.3299C>T	c.(3298-3300)TCC>TTC	p.S1100F	KDR_uc003hat.1_Missense_Mutation_p.S1100F	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	1100	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	CTTACCTAAGGAAAATATTTC	0.413			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			25	69					0	0	0.007291	0	0
REST	5978	broad.mit.edu	37	4	57796419	57796419	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:57796419C>T	uc003hch.2	+	4	1742	c.1395C>T	c.(1393-1395)TCC>TCT	p.S465S	REST_uc003hci.2_Silent_p.S465S|REST_uc010ihf.2_Silent_p.S139S	NM_005612	NP_005603	Q13127	REST_HUMAN	RE1-silencing transcription factor	465	Lys-rich.				cardiac muscle cell myoblast differentiation|cellular response to drug|cellular response to electrical stimulus|cellular response to glucocorticoid stimulus|histone H4 deacetylation|negative regulation by host of viral transcription|negative regulation of aldosterone biosynthetic process|negative regulation of calcium ion-dependent exocytosis|negative regulation of cell proliferation|negative regulation of cortisol biosynthetic process|negative regulation of dense core granule biogenesis|negative regulation of insulin secretion|negative regulation of mesenchymal stem cell differentiation|negative regulation of neurogenesis|negative regulation of neuron differentiation|positive regulation of apoptosis|positive regulation of caspase activity|positive regulation of transcription, DNA-dependent	cytoplasm|transcriptional repressor complex	calcium channel activity|chromatin binding|core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|outward rectifier potassium channel activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|zinc ion binding			skin(5)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	9	Glioma(25;0.08)|all_neural(26;0.181)					ATGAAAAGTCCGTCAAAGCAG	0.373													8	26					0	0	0.003080	0	0
LPHN3	23284	broad.mit.edu	37	4	62903526	62903526	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:62903526G>A	uc010ihh.2	+	21	3638	c.3465G>A	c.(3463-3465)GGG>GGA	p.G1155G	LPHN3_uc003hcq.3_Silent_p.G1155G|LPHN3_uc003hct.2_Silent_p.G539G	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	1133	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						TTGGTTCAGGGAAAACATCTG	0.403													15	39					0	0	0.004990	0	0
UGT2B10	7365	broad.mit.edu	37	4	69683807	69683807	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:69683807C>T	uc003hee.2	+	2	804	c.779C>T	c.(778-780)TCC>TTC	p.S260F	UGT2B10_uc011cam.1_Missense_Mutation_p.S176F	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	260					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						ATGCGAAACTCCTGGAATTTT	0.388													10	24					0	0	0.006214	0	0
ENAM	10117	broad.mit.edu	37	4	71507955	71507955	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:71507955G>A	uc011caw.1	+	9	1093	c.812G>A	c.(811-813)GGA>GAA	p.G271E		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	271					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			AGCCCCACAGGAAACAGTACC	0.542													15	25					0	0	0.020292	0	0
IL8	3576	broad.mit.edu	37	4	74607292	74607292	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:74607292G>A	uc003hhe.2	+	2	199	c.98G>A	c.(97-99)AGA>AAA	p.R33K	IL8_uc011cbh.1_Missense_Mutation_p.R33K	NM_000584	NP_000575	P10145	IL8_HUMAN	interleukin 8 precursor	33					angiogenesis|calcium-mediated signaling|cell cycle arrest|cellular response to lipopolysaccharide|embryonic digestive tract development|G-protein coupled receptor protein signaling pathway|immune response|induction of positive chemotaxis|inflammatory response|negative regulation of cell proliferation|neutrophil activation|neutrophil chemotaxis|positive regulation of neutrophil chemotaxis|regulation of cell adhesion|regulation of retroviral genome replication	extracellular space|intracellular	chemokine activity|interleukin-8 receptor binding			ovary(2)	2	Breast(15;0.00102)		all cancers(17;0.00169)|Lung(101;0.128)|LUSC - Lung squamous cell carcinoma(112;0.187)	LUSC - Lung squamous cell carcinoma(721;0.008)	Ketoprofen(DB01009)|Salbutamol(DB01001)|Simvastatin(DB00641)|Zileuton(DB00744)	AAAGAACTTAGATGTCAGTGC	0.428													4	16					0	0	0.009096	0	0
PPBP	5473	broad.mit.edu	37	4	74853765	74853765	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:74853765G>A	uc003hhj.2	-	1	136	c.56C>T	c.(55-57)GCC>GTC	p.A19V		NM_002704	NP_002695	P02775	CXCL7_HUMAN	pro-platelet basic protein precursor	19					chemotaxis|defense response to bacterium|immune response|platelet activation|platelet degranulation|positive regulation of cell division	extracellular space|platelet alpha granule lumen	chemokine activity|glucose transmembrane transporter activity|growth factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(15;0.00136)		all cancers(17;0.00273)|Lung(101;0.196)			CACCTGCAAGGCATGAAGTGG	0.517													14	38					0	0	0.004007	0	0
CCDC158	339965	broad.mit.edu	37	4	77317556	77317556	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:77317556G>A	uc003hkb.3	-	3	307	c.154C>T	c.(154-156)CCT>TCT	p.P52S	CCDC158_uc003hkd.2_Missense_Mutation_p.P52S	NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	52										skin(3)|ovary(2)|pancreas(1)	6						GGGAAAAAAGGAACCTGTGTC	0.343													9	22					0	0	0.010729	0	0
FRAS1	80144	broad.mit.edu	37	4	79188573	79188573	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:79188573T>C	uc003hlb.2	+	9	1408	c.968T>C	c.(967-969)GTG>GCG	p.V323A	FRAS1_uc003hkw.2_Missense_Mutation_p.V323A|FRAS1_uc003hky.1_Missense_Mutation_p.V27A|FRAS1_uc003hkz.2_Missense_Mutation_p.V27A	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	323	VWFC 5.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TGTGCCAAAGTGGAGTGTGCC	0.547													5	18					0	0	0.014758	0	0
FRAS1	80144	broad.mit.edu	37	4	79420968	79420968	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:79420968G>A	uc003hlb.2	+	61	9649	c.9209G>A	c.(9208-9210)AGA>AAA	p.R3070K	FRAS1_uc003hlc.1_Missense_Mutation_p.R72K	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3065	Calx-beta 5.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GTGATCCGCAGAGGGGATCAG	0.552													29	69					0	0	0.008361	0	0
LIN54	132660	broad.mit.edu	37	4	83905883	83905883	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:83905883G>A	uc003hnx.3	-	2	493	c.115C>T	c.(115-117)CCC>TCC	p.P39S	LIN54_uc003hnz.3_Intron|LIN54_uc003hny.3_Intron|LIN54_uc010ijt.2_Missense_Mutation_p.P39S|LIN54_uc010iju.2_5'UTR|LIN54_uc010ijv.2_Intron	NM_194282	NP_919258	Q6MZP7	LIN54_HUMAN	lin-54 homolog isoform a	39					cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		Hepatocellular(203;0.114)				GTCTCCATGGGAATTGGGGAT	0.418													17	58					0	0	0.004990	0	0
CDS1	1040	broad.mit.edu	37	4	85569815	85569815	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:85569815C>T	uc011ccv.1	+	13	1860	c.1362C>T	c.(1360-1362)ATC>ATT	p.I454I		NM_001263	NP_001254	Q92903	CDS1_HUMAN	CDP-diacylglycerol synthase 1	454				TLKTHLIEKGILQPTLKV -> P (in Ref. 1; AAC50735).	signal transduction|visual perception	endoplasmic reticulum membrane|integral to membrane	diacylglycerol cholinephosphotransferase activity|phosphatidate cytidylyltransferase activity			large_intestine(2)|ovary(1)|breast(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.00101)		AGAAAGGAATCCTACAACCCA	0.388													4	21					0	0	0.009096	0	0
DSPP	1834	broad.mit.edu	37	4	88534234	88534234	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:88534234C>T	uc003hqu.2	+	4	1016	c.896C>T	c.(895-897)TCA>TTA	p.S299L		NM_014208	NP_055023	Q9NZW4	DSPP_HUMAN	dentin sialophosphoprotein preproprotein	299					biomineral tissue development|ossification|skeletal system development	proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent			central_nervous_system(1)	1		Hepatocellular(203;0.114)|all_hematologic(202;0.236)		OV - Ovarian serous cystadenocarcinoma(123;0.000508)		GGTCAAAATTCAGATAGTAAA	0.428													12	26					0	0	0.010729	0	0
MMRN1	22915	broad.mit.edu	37	4	90830522	90830522	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:90830522G>A	uc003hst.2	+	2	790	c.719G>A	c.(718-720)TGG>TAG	p.W240*	MMRN1_uc010iku.2_Nonsense_Mutation_p.W206*|MMRN1_uc011cds.1_5'UTR	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	240	EMI.				cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		CCTTGTGGCTGGACCGGTGGA	0.413													2	1					0	0	0.004672	0	0
PDHA2	5161	broad.mit.edu	37	4	96761632	96761632	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:96761632C>T	uc003htr.3	+	1	394	c.331C>T	c.(331-333)CAC>TAC	p.H111Y		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	111					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	CCCCTCGGATCACGTCATTAC	0.527													30	95					0	0	0.015359	0	0
C4orf37	285555	broad.mit.edu	37	4	98865133	98865133	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:98865133C>T	uc003htt.1	-	8	1049	c.959G>A	c.(958-960)GGA>GAA	p.G320E		NM_174952	NP_777612	Q8N412	CD037_HUMAN	hypothetical protein LOC285555	320											0				OV - Ovarian serous cystadenocarcinoma(123;2.27e-08)		ATCAGAAATTCCCACACCCTG	0.328													14	31					0	0	0.006122	0	0
C4orf37	285555	broad.mit.edu	37	4	98865158	98865158	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:98865158C>T	uc003htt.1	-	8	1024	c.934G>A	c.(934-936)GAA>AAA	p.E312K		NM_174952	NP_777612	Q8N412	CD037_HUMAN	hypothetical protein LOC285555	312											0				OV - Ovarian serous cystadenocarcinoma(123;2.27e-08)		TGCCAAAATTCCTGTTGAAAG	0.323													8	35					0	0	0.004482	0	0
ADH1C	126	broad.mit.edu	37	4	100266412	100266412	+	Missense_Mutation	SNP	T	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:100266412T>A	uc003huu.2	-	6	356	c.271A>T	c.(271-273)ATC>TTC	p.I91F		NM_000669	NP_000660	P00326	ADH1G_HUMAN	class I alcohol dehydrogenase, gamma subunit	91					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	AAGAGCGGGATGACTTTATCA	0.343									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				5	11					0	0	0.001984	0	0
C4orf17	84103	broad.mit.edu	37	4	100443719	100443719	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:100443719G>A	uc003huw.2	+	3	513	c.190G>A	c.(190-192)GAA>AAA	p.E64K	C4orf17_uc003hux.2_RNA	NM_032149	NP_115525	Q53FE4	CD017_HUMAN	hypothetical protein LOC84103	64											0				OV - Ovarian serous cystadenocarcinoma(123;2.08e-08)		AACATTGTGGGGAGTTGGCCA	0.428													16	41					0	0	0.010504	0	0
LRIT3	345193	broad.mit.edu	37	4	110791013	110791013	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:110791013C>T	uc003hzx.3	+	3	1166	c.973C>T	c.(973-975)CAG>TAG	p.Q325*	LRIT3_uc003hzw.3_Nonsense_Mutation_p.Q187*	NM_198506	NP_940908	Q3SXY7	LRIT3_HUMAN	leucine-rich repeat, immunoglobulin-like and	325						integral to membrane					0				OV - Ovarian serous cystadenocarcinoma(123;0.0011)		GTGGGATGTCCAGCCGGGATC	0.363													43	110					0	0	0.014410	0	0
NDST4	64579	broad.mit.edu	37	4	115767114	115767114	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:115767114A>T	uc003ibu.2	-	10	2659	c.1980T>A	c.(1978-1980)AGT>AGA	p.S660R	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	660	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		ACAGAAAGTCACTTGTAGTAT	0.388													12	42					0	0	0.013537	0	0
KIAA1109	84162	broad.mit.edu	37	4	123097030	123097030	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:123097030C>T	uc003ieh.2	+	4	364	c.319C>T	c.(319-321)CGG>TGG	p.R107W		NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	107					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						CATCATTTTTCGGTGGTGGAA	0.274													7	13					0	0	0.003080	0	0
FAT4	79633	broad.mit.edu	37	4	126238981	126238981	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:126238981C>T	uc003ifj.3	+	1	1415	c.1415C>T	c.(1414-1416)CCT>CTT	p.P472L		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	472	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AATGACCATCCTCCTGTCTTT	0.557											OREG0016317	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	27					0	0	0.008291	0	0
OTUD4	54726	broad.mit.edu	37	4	146072028	146072028	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:146072028G>A	uc003ika.3	-	12	941	c.803C>T	c.(802-804)CCC>CTC	p.P268L	OTUD4_uc003ijz.3_Missense_Mutation_p.P267L	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	332							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					GCTTTCTGGGGGAGGTGCCTT	0.403													12	20					0	0	0.020292	0	0
C4orf51	646603	broad.mit.edu	37	4	146651099	146651099	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:146651099G>A	uc003ikk.2	+	5	483	c.483G>A	c.(481-483)GGG>GGA	p.G161G		NM_001080531	NP_001074000	C9J302	CD051_HUMAN	chromosome 4 open reading frame 51	161											0						GTCGACGAGGGAAAGGTGTCC	0.483													17	66					0	0	0.004990	0	0
FBXW7	55294	broad.mit.edu	37	4	153247254	153247254	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:153247254A>C	uc003ims.2	-	10	1697	c.1548T>G	c.(1546-1548)AGT>AGG	p.S516R	FBXW7_uc011cii.1_Missense_Mutation_p.S516R|FBXW7_uc003imt.2_Missense_Mutation_p.S516R|FBXW7_uc011cih.1_Missense_Mutation_p.S340R|FBXW7_uc003imq.2_Missense_Mutation_p.S436R|FBXW7_uc003imr.2_Missense_Mutation_p.S398R	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	516	WD 4.				interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding			haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				CATATGCTCCACTAACAACCC	0.438			Mis|N|D|F		colorectal|endometrial|T-ALL								6	22					0	0	0.001168	0	0
ARFIP1	27236	broad.mit.edu	37	4	153802227	153802227	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:153802227T>C	uc003imz.2	+	6	800	c.524T>C	c.(523-525)ATT>ACT	p.I175T	ARFIP1_uc003inb.2_Missense_Mutation_p.I143T|ARFIP1_uc003ina.2_Missense_Mutation_p.I143T|ARFIP1_uc003inc.2_Missense_Mutation_p.I175T|ARFIP1_uc011cij.1_Intron	NM_001025595	NP_001020766	P53367	ARFP1_HUMAN	ADP-ribosylation factor interacting protein 1	175	AH.				intracellular protein transport|regulation of protein secretion	cytosol|Golgi membrane				ovary(1)	1	all_hematologic(180;0.093)					TATGAAAATATTTTAAAACTG	0.393													7	24					0	0	0.003080	0	0
KIAA0922	23240	broad.mit.edu	37	4	154510071	154510071	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:154510071C>T	uc003inm.3	+	16	1631	c.1579C>T	c.(1579-1581)CTG>TTG	p.L527L	KIAA0922_uc010ipp.2_Silent_p.L528L|KIAA0922_uc010ipq.2_Silent_p.L380L|KIAA0922_uc010ips.1_3'UTR	NM_015196	NP_056011	A2VDJ0	T131L_HUMAN	hypothetical protein LOC23240 isoform 2	527	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				GAGCCTTTCTCTGGATCAATC	0.343													9	24					0	0	0.008291	0	0
MAP9	79884	broad.mit.edu	37	4	156289808	156289808	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:156289808G>A	uc003ios.2	-	5	902	c.638C>T	c.(637-639)TCC>TTC	p.S213F	MAP9_uc011cin.1_Missense_Mutation_p.S212F|MAP9_uc010iqa.1_RNA|MAP9_uc003iot.1_Missense_Mutation_p.S212F|MAP9_uc010iqb.1_Missense_Mutation_p.S140F	NM_001039580	NP_001034669	Q49MG5	MAP9_HUMAN	aster-associated protein	213					cell division|mitosis	cytoplasm|microtubule|spindle				ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.143)		CGTTGGAAGGGAAGAAGGTGC	0.403													27	66					0	0	0.006320	0	0
FSTL5	56884	broad.mit.edu	37	4	162306931	162306931	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:162306931C>T	uc003iqh.2	-	16	2948	c.2512G>A	c.(2512-2514)GGA>AGA	p.G838R	FSTL5_uc003iqi.2_Missense_Mutation_p.G837R|FSTL5_uc010iqv.2_Missense_Mutation_p.G828R|uc010iqu.1_Intron	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	838						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		ACTGTATTTCCTTTTTCAACT	0.358													11	19					0	0	0.010729	0	0
NAF1	92345	broad.mit.edu	37	4	164050415	164050415	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:164050415G>A	uc003iqj.2	-	8	1313	c.1119C>T	c.(1117-1119)TTC>TTT	p.F373F	NAF1_uc010iqw.1_Intron	NM_138386	NP_612395	Q96HR8	NAF1_HUMAN	nuclear assembly factor 1 homolog isoform a	373					rRNA processing|snRNA pseudouridine synthesis	cytoplasm|nucleus|small nucleolar ribonucleoprotein complex	protein binding|snoRNA binding	p.F373L(1)		ovary(2)	2	all_hematologic(180;0.166)	Prostate(90;0.109)				ATCCTCGTGTGAATTCTCTGT	0.448													22	50					0	0	0.014323	0	0
ANP32C	23520	broad.mit.edu	37	4	165118842	165118842	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:165118842G>A	uc011cjk.1	-	1	22	c.22C>T	c.(22-24)CAT>TAT	p.H8Y	MARCH1_uc003iqs.1_Intron	NM_012403	NP_036535	O43423	AN32C_HUMAN	acidic nuclear phosphoprotein 32C	8											0	all_hematologic(180;0.203)	Prostate(90;0.0138)|Melanoma(52;0.18)|all_neural(102;0.223)		KIRC - Kidney renal clear cell carcinoma(143;0.242)		AGCTCTGAATGAATCCGTCTG	0.542													25	73					0	0	0.005443	0	0
SPOCK3	50859	broad.mit.edu	37	4	167656203	167656203	+	Missense_Mutation	SNP	C	T	T	rs141348000		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:167656203C>T	uc003iri.1	-	12	1321	c.1180G>A	c.(1180-1182)GAT>AAT	p.D394N	SPOCK3_uc011cjp.1_Missense_Mutation_p.D351N|SPOCK3_uc011cjq.1_Missense_Mutation_p.D403N|SPOCK3_uc011cjr.1_Missense_Mutation_p.D274N|SPOCK3_uc003irj.1_Missense_Mutation_p.D391N|SPOCK3_uc011cjs.1_Missense_Mutation_p.D343N|SPOCK3_uc011cjt.1_Missense_Mutation_p.D302N|SPOCK3_uc011cju.1_Missense_Mutation_p.D287N|SPOCK3_uc011cjv.1_Missense_Mutation_p.D296N	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	394	Asp-rich.				signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		tcatgaaaatcgccactagca	0.134													9	16					0	0	0.010729	0	0
GALNTL6	442117	broad.mit.edu	37	4	173150813	173150813	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:173150813C>T	uc003isv.2	+	3	881	c.145C>T	c.(145-147)CCA>TCA	p.P49S		NM_001034845	NP_001030017	Q49A17	GLTL6_HUMAN	N-acetylgalactosaminyltransferase-like 6	49	Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(2)|ovary(1)|skin(1)	4						ACAGACATTTCCACTGGGCCT	0.358													16	33					0	0	0.003163	0	0
KIAA1712	80817	broad.mit.edu	37	4	175223258	175223258	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:175223258A>T	uc003itr.2	+	4	572	c.158A>T	c.(157-159)TAT>TTT	p.Y53F	KIAA1712_uc010iro.2_Missense_Mutation_p.Y53F|KIAA1712_uc003its.2_RNA	NM_001040157	NP_001035247	Q9C0F1	CEP44_HUMAN	HBV PreS1-transactivated protein 3 isoform a	53						centrosome|midbody|spindle pole					0		Prostate(90;0.00276)|Melanoma(52;0.0179)|Renal(120;0.0376)|Breast(14;0.0991)|all_hematologic(60;0.124)|all_neural(102;0.196)		all cancers(43;4.06e-18)|Epithelial(43;1.18e-15)|OV - Ovarian serous cystadenocarcinoma(60;4.65e-09)|GBM - Glioblastoma multiforme(59;0.00098)|STAD - Stomach adenocarcinoma(60;0.0029)|LUSC - Lung squamous cell carcinoma(193;0.0949)		TACTCACCTTATGTAACAGAA	0.328													10	30					0	0	0.006214	0	0
GLRA3	8001	broad.mit.edu	37	4	175565126	175565126	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:175565126G>A	uc003ity.1	-	10	1709	c.1206C>T	c.(1204-1206)GGC>GGT	p.G402G	GLRA3_uc003itz.1_Silent_p.G387G	NM_006529	NP_006520	O75311	GLRA3_HUMAN	glycine receptor, alpha 3 isoform a	402	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(3)	3		Prostate(90;0.00601)|Breast(14;0.0091)|Melanoma(52;0.00959)|Renal(120;0.0183)|all_neural(102;0.0891)|all_hematologic(60;0.107)		all cancers(43;4.99e-18)|Epithelial(43;1.18e-16)|OV - Ovarian serous cystadenocarcinoma(60;5.88e-09)|STAD - Stomach adenocarcinoma(60;0.00442)|GBM - Glioblastoma multiforme(59;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0421)	Glycine(DB00145)	GGTGGTTGGGGCCCTTTGGAG	0.498													22	57					0	0	0.004656	0	0
VEGFC	7424	broad.mit.edu	37	4	177650815	177650815	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:177650815C>T	uc003ius.1	-	2	663	c.233G>A	c.(232-234)TGG>TAG	p.W78*		NM_005429	NP_005420	P49767	VEGFC_HUMAN	vascular endothelial growth factor C	78					angiogenesis|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of mast cell chemotaxis|substrate-dependent cell migration|vascular endothelial growth factor receptor signaling pathway	membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity			lung(5)	5		Breast(14;0.000223)|Renal(120;0.00988)|Prostate(90;0.00996)|Melanoma(52;0.0101)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;1.59e-18)|Epithelial(43;3.68e-16)|OV - Ovarian serous cystadenocarcinoma(60;8.52e-09)|GBM - Glioblastoma multiforme(59;0.000546)|STAD - Stomach adenocarcinoma(60;0.00308)|Colorectal(24;0.025)|COAD - Colon adenocarcinoma(29;0.0359)|LUSC - Lung squamous cell carcinoma(193;0.0397)		GTACATTTTCCAATATTCTGG	0.428													4	17					0	0	0.009096	0	0
ODZ3	55714	broad.mit.edu	37	4	183549824	183549824	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:183549824G>A	uc003ivd.1	+	4	807	c.770G>A	c.(769-771)GGA>GAA	p.G257E		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	257	Cytoplasmic (Potential).|Teneurin N-terminal.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TTCAAAACAGGAACAGGTACA	0.428													5	8					0	0	0.014758	0	0
ODZ3	55714	broad.mit.edu	37	4	183594300	183594300	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:183594300C>T	uc003ivd.1	+	6	1291	c.1254C>T	c.(1252-1254)TTC>TTT	p.F418F		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	418	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TTCTTAAATTCAATATCTCTC	0.433													10	27					0	0	0.010729	0	0
ODZ3	55714	broad.mit.edu	37	4	183651361	183651361	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:183651361C>T	uc003ivd.1	+	14	2631	c.2594C>T	c.(2593-2595)TCT>TTT	p.S865F	ODZ3_uc003ive.1_Missense_Mutation_p.S271F	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	865	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		AGCCTTGCATCTGTCATCAGA	0.378													15	47					0	0	0.004990	0	0
ODZ3	55714	broad.mit.edu	37	4	183651436	183651436	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:183651436C>T	uc003ivd.1	+	14	2706	c.2669C>T	c.(2668-2670)CCA>CTA	p.P890L	ODZ3_uc003ive.1_Missense_Mutation_p.P296L	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	890	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TTCCATTACCCAGAATATGGA	0.418													21	56					0	0	0.012319	0	0
STOX2	56977	broad.mit.edu	37	4	184931088	184931088	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:184931088C>T	uc003ivz.1	+	3	2532	c.1097C>T	c.(1096-1098)TCC>TTC	p.S366F	STOX2_uc003iwa.1_Missense_Mutation_p.S55F	NM_020225	NP_064610	Q9P2F5	STOX2_HUMAN	storkhead box 2	366					embryo development|maternal placenta development						0		all_lung(41;1.89e-12)|Lung NSC(41;3.48e-12)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|all_hematologic(60;0.027)|Prostate(90;0.0283)		all cancers(43;2.85e-26)|Epithelial(43;2.27e-22)|OV - Ovarian serous cystadenocarcinoma(60;3.4e-10)|Colorectal(24;8.23e-06)|GBM - Glioblastoma multiforme(59;1.64e-05)|STAD - Stomach adenocarcinoma(60;3.6e-05)|COAD - Colon adenocarcinoma(29;4.37e-05)|LUSC - Lung squamous cell carcinoma(40;0.008)|READ - Rectum adenocarcinoma(43;0.227)		CATCGGAAGTCCCATGGAAAG	0.502													4	19					0	0	0.014758	0	0
IRF2	3660	broad.mit.edu	37	4	185309930	185309930	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:185309930G>A	uc003iwf.3	-	9	1232	c.1032C>T	c.(1030-1032)GCC>GCT	p.A344A		NM_002199	NP_002190	P14316	IRF2_HUMAN	interferon regulatory factor 2	344					blood coagulation|cell proliferation|interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	focal adhesion|nucleoplasm	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		all_lung(41;7.86e-14)|Lung NSC(41;1.87e-13)|Colorectal(36;0.00146)|Hepatocellular(41;0.00826)|Renal(120;0.00992)|Prostate(90;0.0115)|all_neural(102;0.0573)|all_hematologic(60;0.0592)		all cancers(43;3.94e-27)|Epithelial(43;5.3e-24)|OV - Ovarian serous cystadenocarcinoma(60;1.06e-10)|Colorectal(24;7.98e-07)|STAD - Stomach adenocarcinoma(60;3.95e-05)|GBM - Glioblastoma multiforme(59;8.3e-05)|COAD - Colon adenocarcinoma(29;0.000106)|BRCA - Breast invasive adenocarcinoma(30;0.000311)|LUSC - Lung squamous cell carcinoma(40;0.0128)|READ - Rectum adenocarcinoma(43;0.0419)		TCTTGACGCGGGCCTGGGTGA	0.527													30	84					0	0	0.010818	0	0
ZFP42	132625	broad.mit.edu	37	4	188924723	188924723	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:188924723G>A	uc003izg.1	+	3	1007	c.762G>A	c.(760-762)AAG>AAA	p.K254K	ZFP42_uc003izh.1_Silent_p.K254K|ZFP42_uc003izi.1_Silent_p.K254K	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	254	C2H2-type 3.				female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		GGTGCGGAAAGCGCTTCTCTC	0.493													11	34					0	0	0.010729	0	0
TRIML1	339976	broad.mit.edu	37	4	189063465	189063465	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr4:189063465C>T	uc003izm.1	+	3	679	c.564C>T	c.(562-564)TTC>TTT	p.F188F	TRIML1_uc003izn.1_5'Flank	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	188	Potential.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		TGCACCAGTTCCTGAAGGAAG	0.363													18	42					0	0	0.007413	0	0
TAS2R1	50834	broad.mit.edu	37	5	9630007	9630007	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:9630007G>A	uc003jem.1	-	1	457	c.138C>T	c.(136-138)CTC>CTT	p.L46L		NM_019599	NP_062545	Q9NYW7	TA2R1_HUMAN	taste receptor T2R1	46	Cytoplasmic (Potential).				chemosensory behavior|sensory perception of taste	integral to membrane	taste receptor activity			ovary(3)	3						AAGAAAGAAGGAGATCCAGCG	0.383													11	39					0	0	0.013537	0	0
DNAH5	1767	broad.mit.edu	37	5	13777445	13777445	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:13777445G>A	uc003jfd.2	-	54	9013	c.8971C>T	c.(8971-8973)CTG>TTG	p.L2991L		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2991	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCTTCCATCAGATTTGATGTG	0.333									Kartagener_syndrome				3	15					0	0	0.004672	0	0
DNAH5	1767	broad.mit.edu	37	5	13794115	13794115	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:13794115G>A	uc003jfd.2	-	48	7982	c.7940C>T	c.(7939-7941)CCT>CTT	p.P2647L		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2647	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTTTCCCGCAGGAGGGCCATA	0.368									Kartagener_syndrome				17	24					0	0	0.006122	0	0
DNAH5	1767	broad.mit.edu	37	5	13885137	13885137	+	Missense_Mutation	SNP	G	A	A	rs143673459		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:13885137G>A	uc003jfd.2	-	19	2986	c.2944C>T	c.(2944-2946)CGC>TGC	p.R982C		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	982	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ATACGTTTGCGAATGGCCTCT	0.418									Kartagener_syndrome				18	86					0	0	0.006122	0	0
CDH18	1016	broad.mit.edu	37	5	19473355	19473355	+	Missense_Mutation	SNP	C	T	T	rs149640304		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:19473355C>T	uc003jgc.2	-	12	2730	c.2353G>A	c.(2353-2355)GAA>AAA	p.E785K	CDH18_uc003jgd.2_Missense_Mutation_p.E785K|CDH18_uc011cnm.1_3'UTR	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	785	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					CTTTCAGATTCTATTTCTCCA	0.438													8	38					0	0	0.004482	0	0
CDH9	1007	broad.mit.edu	37	5	26890578	26890578	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:26890578G>A	uc003jgs.1	-	8	1518	c.1349C>T	c.(1348-1350)TCA>TTA	p.S450L	CDH9_uc011cnv.1_Missense_Mutation_p.S43L	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	450	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						CCAAGGAGATGATTCCCGGTC	0.403													12	62					0	0	0.010729	0	0
UGT3A2	167127	broad.mit.edu	37	5	36039718	36039718	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:36039718G>A	uc003jjz.1	-	5	1029	c.936C>T	c.(934-936)ATC>ATT	p.I312I	UGT3A2_uc011cos.1_Silent_p.I278I|UGT3A2_uc011cot.1_Silent_p.I10I	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	312	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TCTCCTTGAAGATTTCCGGAT	0.493													38	55					0	0	0.005524	0	0
NIPBL	25836	broad.mit.edu	37	5	37006515	37006515	+	Silent	SNP	T	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:37006515T>A	uc003jkl.3	+	17	4411	c.3912T>A	c.(3910-3912)GTT>GTA	p.V1304V	NIPBL_uc003jkk.3_Silent_p.V1304V	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	1304					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			TGGAGAGAGTTACAAAATCAG	0.333													14	19					0	0	0.004007	0	0
C5orf42	65250	broad.mit.edu	37	5	37107844	37107844	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:37107844G>A	uc011cpa.1	-	52	9685	c.9454C>T	c.(9454-9456)CCT>TCT	p.P3152S	C5orf42_uc003jko.1_Missense_Mutation_p.P183S|C5orf42_uc003jkp.1_RNA|C5orf42_uc011coy.1_Missense_Mutation_p.P1670S|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Missense_Mutation_p.P2245S	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	3152										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			ACCCCAAAAGGATGCTCTGGC	0.463													8	11					0	0	0.006214	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41018861	41018861	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:41018861G>A	uc003jmj.3	-	26	3095	c.2605C>T	c.(2605-2607)CTA>TTA	p.L869L	HEATR7B2_uc003jmi.3_Silent_p.L424L	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	869							binding			ovary(6)|central_nervous_system(2)	8						AGTTTTCCTAGGGCGTCCATG	0.453													12	70					0	0	0.013537	0	0
C6	729	broad.mit.edu	37	5	41181522	41181522	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:41181522C>T	uc003jmk.2	-	7	1076	c.866G>A	c.(865-867)AGA>AAA	p.R289K	C6_uc003jml.1_Missense_Mutation_p.R289K	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	289	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				ATTTTCACTTCTCTTTGAGGA	0.363													7	45					0	0	0.003080	0	0
PAIP1	10605	broad.mit.edu	37	5	43536967	43536967	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:43536967G>A	uc003job.2	-	6	1173	c.926C>T	c.(925-927)TCT>TTT	p.S309F	PAIP1_uc003joa.2_Missense_Mutation_p.S230F|PAIP1_uc010ivp.2_Missense_Mutation_p.S230F|PAIP1_uc010ivo.2_RNA|PAIP1_uc003joc.2_Missense_Mutation_p.S197F	NM_006451	NP_006442	Q9H074	PAIP1_HUMAN	poly(A) binding protein interacting protein 1	309	MIF4G.				mRNA stabilization|nuclear-transcribed mRNA poly(A) tail shortening|translational initiation	cytosol	protein binding|RNA binding|translation activator activity			ovary(1)	1	Lung NSC(6;2.07e-05)					CATAGGATTAGAAAACAGGGC	0.323													10	49					0	0	0.008291	0	0
NNT	23530	broad.mit.edu	37	5	43628344	43628344	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:43628344C>T	uc003joe.2	+	7	1074	c.819C>T	c.(817-819)CCC>CCT	p.P273P	NNT_uc003jof.2_Silent_p.P273P	NM_012343	NP_036475	Q13423	NNTM_HUMAN	nicotinamide nucleotide transhydrogenase	273	Mitochondrial matrix.				tricarboxylic acid cycle	integral to membrane|mitochondrial respiratory chain	NAD binding|NAD(P)+ transhydrogenase (AB-specific) activity|NAD(P)+ transhydrogenase (B-specific) activity|NADP binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(6;2.58e-06)				NADH(DB00157)	GTGCTGAGCCCTTGGAGGTGG	0.433													15	64					0	0	0.003163	0	0
FGF10	2255	broad.mit.edu	37	5	44305142	44305142	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:44305142C>T	uc003jog.1	-	3	582	c.582G>A	c.(580-582)AGG>AGA	p.R194R		NM_004465	NP_004456	O15520	FGF10_HUMAN	fibroblast growth factor 10 precursor	194					actin cytoskeleton reorganization|activation of MAPK activity|bud outgrowth involved in lung branching|ERK1 and ERK2 cascade|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|insulin receptor signaling pathway|lacrimal gland development|lung saccule development|mesonephros development|negative regulation of cell cycle arrest|positive regulation of ATPase activity|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of DNA repair|positive regulation of DNA replication|positive regulation of epithelial cell migration|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of ERK1 and ERK2 cascade|positive regulation of hair follicle cell proliferation|positive regulation of keratinocyte migration|positive regulation of keratinocyte proliferation|positive regulation of lymphocyte proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of Ras protein signal transduction|positive regulation of transcription, DNA-dependent|positive regulation of urothelial cell proliferation|protein localization at cell surface|radial glial cell differentiation|regulation of saliva secretion|response to protein stimulus|secretion by lung epithelial cell involved in lung growth|tear secretion|thymus development|urothelial cell proliferation	cell surface|extracellular space|nucleus|plasma membrane	chemoattractant activity|growth factor activity|heparin binding|type 2 fibroblast growth factor receptor binding			lung(3)	3	Lung NSC(6;1.12e-06)					AGGTGTTTTTCCTTCGTGTTT	0.438													10	50					0	0	0.006214	0	0
HCN1	348980	broad.mit.edu	37	5	45267329	45267329	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:45267329G>A	uc003jok.2	-	7	1670	c.1645C>T	c.(1645-1647)CGT>TGT	p.R549C		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	549	cAMP.|Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						CTGGCAGTACGACGTCCTTTG	0.408													16	54					0	0	0.006122	0	0
HCN1	348980	broad.mit.edu	37	5	45645701	45645701	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:45645701C>T	uc003jok.2	-	2	460	c.435G>A	c.(433-435)TGG>TGA	p.W145*		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	145	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						TTATTAAATCCCAGTAAAACC	0.308													6	9					0	0	0.001984	0	0
CDC20B	166979	broad.mit.edu	37	5	54416372	54416372	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:54416372C>T	uc003jpo.1	-	10	1397	c.1222G>A	c.(1222-1224)GAT>AAT	p.D408N	CDC20B_uc003jpn.1_Missense_Mutation_p.D408N|CDC20B_uc010ivu.1_Intron	NM_152623	NP_689836	Q86Y33	CD20B_HUMAN	CDC20 cell division cycle 20 homolog B isoform	408	WD 5.										0		Lung NSC(810;0.000744)|Breast(144;0.159)|Prostate(74;0.194)	LUSC - Lung squamous cell carcinoma(15;0.225)			GGACACCAATCCATGGCCTTT	0.488													25	96					0	0	0.006320	0	0
DEPDC1B	55789	broad.mit.edu	37	5	59899378	59899378	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:59899378G>A	uc003jsh.2	-	9	1155	c.1082C>T	c.(1081-1083)TCC>TTC	p.S361F	DEPDC1B_uc011cqm.1_Missense_Mutation_p.S361F|DEPDC1B_uc011cqn.1_Missense_Mutation_p.S334F	NM_018369	NP_060839	Q8WUY9	DEP1B_HUMAN	DEP domain containing 1B isoform 1	361	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)	1		Lung NSC(810;0.000214)|Prostate(74;0.0147)|Breast(144;0.0991)|Ovarian(174;0.17)				GATGCAACGGGAAAATGTCTG	0.403													10	32					0	0	0.013537	0	0
NDUFAF2	91942	broad.mit.edu	37	5	60448757	60448757	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:60448757G>A	uc003jsp.3	+	4	612	c.485G>A	c.(484-486)CGA>CAA	p.R162Q	NDUFAF2_uc003jso.3_RNA	NM_174889	NP_777549	Q8N183	MIMIT_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	162						membrane|mitochondrion	electron carrier activity|NADH dehydrogenase (ubiquinone) activity				0		Lung NSC(810;3.36e-05)|Prostate(74;0.0225)|Ovarian(174;0.17)|Breast(144;0.237)				TGGATGCCACGAGATGGCAAG	0.408													13	9					0	0	0.020292	0	0
IPO11	51194	broad.mit.edu	37	5	61833062	61833062	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:61833062C>T	uc003jtc.2	+	24	2386	c.2196C>T	c.(2194-2196)TCC>TCT	p.S732S	IPO11_uc011cqr.1_Silent_p.S772S|IPO11_uc003jtd.1_RNA|IPO11_uc010iwr.2_Intron	NM_016338	NP_057422	Q9UI26	IPO11_HUMAN	Ran binding protein 11 isoform 2	732						cytoplasm|nucleus	protein binding			lung(2)|skin(2)	4		Lung NSC(810;8.99e-06)|Prostate(74;0.0235)|Ovarian(174;0.0511)|Breast(144;0.077)		Lung(70;0.0613)		TATGCCAGTCCTTTTGTGAAC	0.269													37	30					0	0	0.014410	0	0
TRIM23	373	broad.mit.edu	37	5	64906724	64906724	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:64906724G>A	uc003jty.2	-	5	878	c.792C>T	c.(790-792)ATC>ATT	p.I264I	TRIM23_uc003jtw.2_Silent_p.I264I|TRIM23_uc003jtx.2_Silent_p.I264I	NM_001656	NP_001647	P36406	TRI23_HUMAN	ADP-ribosylation factor domain protein 1 isoform	264					interspecies interaction between organisms|small GTPase mediated signal transduction	Golgi membrane|lysosomal membrane	enzyme activator activity|GDP binding|GTP binding|GTPase activity|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|lung(1)	4		Lung NSC(167;3.24e-06)|Prostate(74;0.0138)|Breast(144;0.0433)|Ovarian(174;0.0545)|Colorectal(97;0.234)		Lung(70;0.00473)		CATCTTCCACGATTTGTTCTC	0.363													20	25					0	0	0.018920	0	0
RAD17	5884	broad.mit.edu	37	5	68689179	68689179	+	Splice_Site	SNP	A	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:68689179A>T	uc003jwo.2	+	12	1371	c.1309_splice	c.e12-2	p.E437_splice	RAD17_uc003jwg.2_Splice_Site_p.E426_splice|RAD17_uc003jwh.2_Splice_Site_p.E426_splice|RAD17_uc003jwi.2_Splice_Site_p.E426_splice|RAD17_uc003jwj.2_Splice_Site_p.E426_splice|RAD17_uc003jwk.2_Splice_Site_p.E426_splice|RAD17_uc003jwl.2_Splice_Site_p.E426_splice|RAD17_uc003jwm.2_Splice_Site_p.E261_splice|RAD17_uc003jwn.2_Splice_Site_p.E340_splice|RAD17_uc003jwp.2_Splice_Site	NM_133339	NP_579917	O75943	RAD17_HUMAN	RAD17 homolog isoform 2						cell cycle|DNA damage checkpoint|DNA repair|DNA replication|DNA replication checkpoint|mitotic cell cycle checkpoint|negative regulation of DNA replication|regulation of phosphorylation	nucleoplasm	ATP binding|nucleoside-triphosphatase activity|protein binding				0		Lung NSC(167;5.19e-05)|Prostate(74;0.0143)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;9.36e-57)|Epithelial(20;1.21e-52)|all cancers(19;3.34e-48)|Lung(70;0.0183)		TTCTTTTTATAGGAGGTAGTA	0.294								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					14	45					0	0	0.004007	0	0
HAPLN1	1404	broad.mit.edu	37	5	82948507	82948507	+	Silent	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:82948507A>G	uc003kim.2	-	2	308	c.237T>C	c.(235-237)ATT>ATC	p.I79I	HAPLN1_uc003kin.2_Silent_p.I79I	NM_001884	NP_001875	P10915	HPLN1_HUMAN	hyaluronan and proteoglycan link protein 1	79	Ig-like V-type.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			large_intestine(3)|ovary(1)|skin(1)	5		Lung NSC(167;0.0484)|all_lung(232;0.0522)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;7.82e-42)|Epithelial(54;5.88e-35)|all cancers(79;1.14e-29)		TGGTCCACTTAATTCGGATTT	0.428													32	113					0	0	0.006230	0	0
GPR98	84059	broad.mit.edu	37	5	89990391	89990391	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:89990391G>A	uc003kju.2	+	33	7914	c.7818G>A	c.(7816-7818)GTG>GTA	p.V2606V	GPR98_uc003kjt.2_Silent_p.V312V|GPR98_uc003kjv.2_Silent_p.V206V	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2606	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AAACCTTGGTGGAGCTGATGA	0.463													56	55					0	0	0.014410	0	0
GPR98	84059	broad.mit.edu	37	5	90046372	90046372	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:90046372C>T	uc003kju.2	+	53	11075	c.10979C>T	c.(10978-10980)TCA>TTA	p.S3660L	GPR98_uc003kjt.2_Missense_Mutation_p.S1366L|GPR98_uc003kjv.2_Missense_Mutation_p.S1260L	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3660	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTTCAGAATTCATTATATAAG	0.358													41	60					0	0	0.014410	0	0
GPR98	84059	broad.mit.edu	37	5	90074267	90074268	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:90074267_90074268GG>AA	uc003kju.2	+	63	12786_12787	c.12690_12691GG>AA	c.(12688-12693)GAGGAA>GAAAAA	p.E4231K	GPR98_uc003kjt.2_Missense_Mutation_p.E1937K|GPR98_uc003kjw.2_5'Flank	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4231	Extracellular (Potential).|Calx-beta 28.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ACATTCCCGAGGAAAAAAGCTT	0.441													7	10					0	0	0.004672	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101834496	101834496	+	Missense_Mutation	SNP	C	T	T	rs112814311		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:101834496C>T	uc003knn.2	-	1	225	c.53G>A	c.(52-54)GGA>GAA	p.G18E	SLCO6A1_uc003kno.2_Missense_Mutation_p.G18E|SLCO6A1_uc003knp.2_Missense_Mutation_p.G18E|SLCO6A1_uc003knq.2_Missense_Mutation_p.G18E	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	18	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		CGGCTCTACTCCCCTTGAGAC	0.672													137	145					0	0	0.014410	0	0
SLC27A6	28965	broad.mit.edu	37	5	128302184	128302184	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:128302184C>T	uc003kuy.2	+	2	750	c.354C>T	c.(352-354)TTC>TTT	p.F118F	SLC27A6_uc003kuz.2_Silent_p.F118F	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	118					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		AGCCGGACTTCGTTCACGTGT	0.567													9	45					0	0	0.006214	0	0
HNRNPA0	10949	broad.mit.edu	37	5	137088949	137088949	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:137088949C>T	uc003lbt.2	-	1	1091	c.807G>A	c.(805-807)AAG>AAA	p.K269K	MYOT_uc011cye.1_Intron|HNRNPA0_uc010jeo.2_RNA	NM_006805	NP_006796	Q13151	ROA0_HUMAN	heterogeneous nuclear ribonucleoprotein A0	269	Gly-rich.				nuclear mRNA splicing, via spliceosome	heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|RNA binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			cgccgccgcTCTTCATGGGCC	0.493													14	23					0	0	0.004990	0	0
KIF20A	10112	broad.mit.edu	37	5	137517384	137517384	+	Silent	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:137517384T>C	uc003lcj.2	+	4	838	c.342T>C	c.(340-342)ATT>ATC	p.I114I	KIF20A_uc011cyo.1_Silent_p.I96I	NM_005733	NP_005724	O95235	KI20A_HUMAN	kinesin family member 20A	114	Kinesin-motor.				cytokinesis|M phase of mitotic cell cycle|microtubule-based movement|protein transport|vesicle-mediated transport	Golgi apparatus|microtubule|nucleoplasm	ATP binding|microtubule motor activity|protein binding|transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			AACGGGGAATTGGCCAAGCCA	0.478													22	67					0	0	0.014323	0	0
PCDHA1	56147	broad.mit.edu	37	5	140166494	140166494	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:140166494G>A	uc003lhb.2	+	1	619	c.619G>A	c.(619-621)GAA>AAA	p.E207K	PCDHA1_uc003lha.2_Missense_Mutation_p.E207K|PCDHA1_uc003lgz.2_Missense_Mutation_p.E207K	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	207	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGAAACACCAGAACTTCACTT	0.448													47	46					0	0	0.014410	0	0
PCDHA2	56146	broad.mit.edu	37	5	140175770	140175770	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:140175770G>A	uc003lhd.2	+	1	1327	c.1221G>A	c.(1219-1221)TTG>TTA	p.L407L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Silent_p.L407L|PCDHA2_uc011czy.1_Silent_p.L407L	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	407	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTACTCGTTGGTGCTGGACA	0.622													157	187					0	0	0.014410	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188600	140188600	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:140188600G>A	uc003lhi.2	+	1	1929	c.1828G>A	c.(1828-1830)GAG>AAG	p.E610K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.E610K|PCDHA4_uc011daa.1_Missense_Mutation_p.E610K	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	610	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTTTCGTACGAGCTGCAGCC	0.672													65	64					0	0	0.014410	0	0
PCDHA5	56143	broad.mit.edu	37	5	140203175	140203175	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:140203175G>A	uc003lhl.2	+	1	1815	c.1815G>A	c.(1813-1815)TGG>TGA	p.W605*	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Nonsense_Mutation_p.W605*|PCDHA5_uc003lhj.1_Nonsense_Mutation_p.W605*	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	605	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACAACGCTTGGCTTTCGTATG	0.662													33	100					0	0	0.012213	0	0
PCDHA10	56139	broad.mit.edu	37	5	140237491	140237491	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:140237491C>T	uc003lhx.2	+	1	1858	c.1858C>T	c.(1858-1860)CCG>TCG	p.P620S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc011dad.1_Missense_Mutation_p.P620S	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	620	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCACGCATCCCGTTTCGCGT	0.632													10	49					0	0	0.010729	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140308247	140308247	+	Silent	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:140308247T>C	uc003lih.2	+	1	1946	c.1770T>C	c.(1768-1770)AGT>AGC	p.S590S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Silent_p.S590S	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	590	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATGCTGACAGTGGTTCTAATG	0.517													75	73					0	0	0.014410	0	0
PCDHB9	56127	broad.mit.edu	37	5	140566913	140566913	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:140566913C>T	uc003liw.1	+	1	21	c.21C>T	c.(19-21)AGC>AGT	p.S7S		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	7					calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGGGGTTCAGCTTTCCAAGAC	0.473													97	96					0	0	0.014410	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140720207	140720207	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:140720207G>A	uc003ljk.1	+	1	1854	c.1669G>A	c.(1669-1671)GAC>AAC	p.D557N	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Missense_Mutation_p.D557N	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	557	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACCAGAACGACAACGCGCC	0.617													49	267					0	0	0.014410	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140720218	140720218	+	Silent	SNP	C	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:140720218C>A	uc003ljk.1	+	1	1865	c.1680C>A	c.(1678-1680)CCC>CCA	p.P560P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Silent_p.P560P	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	560	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACAACGCGCCCGAGATCCTGT	0.627													50	271					2.74695e-27	2.88005e-27	0.014410	1	0
PDE6A	5145	broad.mit.edu	37	5	149314188	149314188	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:149314188C>T	uc003lrg.3	-	2	688	c.568G>A	c.(568-570)GCC>ACC	p.A190T		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A	190	GAF 1.				cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			ATGATTATGGCCACCACATCC	0.448													22	97					0	0	0.016522	0	0
PDGFRB	5159	broad.mit.edu	37	5	149511573	149511573	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:149511573C>T	uc003lro.2	-	8	1681	c.1212G>A	c.(1210-1212)GAG>GAA	p.E404E	PDGFRB_uc010jhd.2_Silent_p.E243E	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	404	Extracellular (Potential).				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	AGAGCTGGACCTCAGCATCCT	0.418			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								20	103					0	0	0.008871	0	0
FAT2	2196	broad.mit.edu	37	5	150946767	150946767	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:150946767C>T	uc003lue.3	-	1	1739	c.1726G>A	c.(1726-1728)GAC>AAC	p.D576N	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Missense_Mutation_p.D576N	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	576	Extracellular (Potential).|Cadherin 5.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ACTGGCCAGTCTTGGCGGATA	0.443													81	83					0	0	0.014410	0	0
FAT2	2196	broad.mit.edu	37	5	150947511	150947511	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:150947511C>T	uc003lue.3	-	1	995	c.982G>A	c.(982-984)GGG>AGG	p.G328R	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Missense_Mutation_p.G328R	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	328	Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGGTTGAACCCATGAAGGTAC	0.502													85	129					0	0	0.014410	0	0
NMUR2	56923	broad.mit.edu	37	5	151784584	151784584	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:151784584C>T	uc003luv.2	-	1	257	c.91G>A	c.(91-93)GAG>AAG	p.E31K		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	31	Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity			ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			GCCAGATACTCCTCGGTGCTG	0.498													40	115					0	0	0.006999	0	0
FAM71B	153745	broad.mit.edu	37	5	156589960	156589960	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:156589960G>A	uc003lwn.2	-	2	1416	c.1316C>T	c.(1315-1317)CCC>CTC	p.P439L		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	439						nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TTTCCTACTGGGATGTCTGTC	0.517													417	453					0	0	0.014410	0	0
FAM71B	153745	broad.mit.edu	37	5	156590543	156590543	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:156590543C>T	uc003lwn.2	-	2	833	c.733G>A	c.(733-735)GCT>ACT	p.A245T		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	245	Ala-rich.					nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GCCGCACTAGCCGTTCCGTGG	0.587													178	187					0	0	0.014410	0	0
C5orf40	408263	broad.mit.edu	37	5	156770374	156770374	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:156770374C>T	uc003lwu.2	-	2	359	c.171G>A	c.(169-171)ACG>ACA	p.T57T	CYFIP2_uc003lwq.2_Intron|CYFIP2_uc011ddn.1_Intron|CYFIP2_uc011ddo.1_Intron|CYFIP2_uc003lwr.2_Intron|CYFIP2_uc003lws.2_Intron|CYFIP2_uc003lwt.2_Intron|CYFIP2_uc011ddp.1_Intron	NM_001001343	NP_001001343	Q8TBE3	FNDC9_HUMAN	hypothetical protein LOC408263	57	Fibronectin type-III.					integral to membrane					0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CGGAGCTGATCGTTCGAGGCA	0.522													69	87					0	0	0.014410	0	0
CLINT1	9685	broad.mit.edu	37	5	157232931	157232931	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:157232931C>T	uc003lxj.1	-	7	1075	c.885G>A	c.(883-885)GGG>GGA	p.G295G	CLINT1_uc003lxi.1_Silent_p.G277G|CLINT1_uc011ddv.1_Silent_p.G295G	NM_014666	NP_055481	Q14677	EPN4_HUMAN	epsin 4	295					endocytosis|post-Golgi vesicle-mediated transport	clathrin-coated vesicle|cytosol|Golgi apparatus|membrane|perinuclear region of cytoplasm	clathrin binding|lipid binding			ovary(2)|pancreas(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TTGCTTTGTCCCCTGTGTAAT	0.448													18	52					0	0	0.012319	0	0
HK3	3101	broad.mit.edu	37	5	176314516	176314516	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:176314516G>A	uc003mfa.2	-	11	1628	c.1536C>T	c.(1534-1536)CTC>CTT	p.L512L	HK3_uc003mez.2_Silent_p.L68L	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	512	Catalytic.			LR -> SE (in Ref. 4; AAC50422).	glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCTCCCCTCGGAGCCCCTTGG	0.657													15	46					0	0	0.020292	0	0
FLT4	2324	broad.mit.edu	37	5	180057580	180057580	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:180057580G>A	uc003mma.3	-	3	454	c.375C>T	c.(373-375)GCC>GCT	p.A125A	FLT4_uc003mlz.3_Silent_p.A125A|FLT4_uc003mmb.1_5'Flank|FLT4_uc011dgy.1_Silent_p.A125A|FLT4_uc011dgz.1_Silent_p.A125A|FLT4_uc011dha.1_Silent_p.A125A	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	125	Ig-like C2-type 1.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	AGGAGCTGGCGGCCGTGGTGC	0.642									Congenital_Hereditary_Lymphedema				7	36					0	0	0.001984	0	0
BTNL3	10917	broad.mit.edu	37	5	180432492	180432492	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr5:180432492C>T	uc003mmr.2	+	8	1149	c.1021C>T	c.(1021-1023)CAT>TAT	p.H341Y	BTNL3_uc010jlp.2_Missense_Mutation_p.H126Y	NM_197975	NP_932079	Q6UXE8	BTNL3_HUMAN	butyrophilin-like 3 precursor	341	B30.2/SPRY.|Cytoplasmic (Potential).				lipid metabolic process	integral to membrane					0	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.00336)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)|all_lung(500;0.248)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000272)			AGCAGGGAAACATTACTGGGA	0.502													36	128					0	0	0.021022	0	0
DUSP22	56940	broad.mit.edu	37	6	292544	292544	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:292544G>A	uc003msx.2	+	1	444	c.5G>A	c.(4-6)GGG>GAG	p.G2E	DUSP22_uc011dhn.1_Missense_Mutation_p.G2E	NM_020185	NP_064570	Q9NRW4	DUS22_HUMAN	dual specificity phosphatase 22	2					apoptosis|cell proliferation|inactivation of MAPK activity|multicellular organismal development|positive regulation of JNK cascade|regulation of cell proliferation|transforming growth factor beta receptor signaling pathway	cytoplasm|nucleus	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(77;0.228)	Breast(5;0.0249)|all_hematologic(90;0.0489)		OV - Ovarian serous cystadenocarcinoma(45;0.0277)|BRCA - Breast invasive adenocarcinoma(62;0.0669)		GCCACCATGGGGAATGGGATG	0.687													5	33					0	0	0.001984	0	0
IRF4	3662	broad.mit.edu	37	6	401488	401488	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:401488C>T	uc003msz.3	+	7	923	c.810C>T	c.(808-810)AGC>AGT	p.S270S	IRF4_uc010jne.1_Silent_p.S270S|IRF4_uc003mta.3_RNA|IRF4_uc003mtb.3_Silent_p.S269S|IRF4_uc003mtc.1_Silent_p.S100S	NM_002460	NP_002451	Q15306	IRF4_HUMAN	interferon regulatory factor 4	270					interferon-gamma-mediated signaling pathway|positive regulation of interleukin-10 biosynthetic process|positive regulation of interleukin-13 biosynthetic process|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-4 biosynthetic process|positive regulation of transcription, DNA-dependent|regulation of T-helper cell differentiation|T cell activation|type I interferon-mediated signaling pathway	cytoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(1)	1		Breast(5;0.0155)|all_lung(73;0.0691)|all_hematologic(90;0.0895)		OV - Ovarian serous cystadenocarcinoma(45;0.03)|BRCA - Breast invasive adenocarcinoma(62;0.0702)		CCACGTCCAGCCCCGAGGGCT	0.602			T	IGH@	MM 								10	59					0	0	0.008291	0	0
WRNIP1	56897	broad.mit.edu	37	6	2784557	2784557	+	Splice_Site	SNP	G	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:2784557G>T	uc003mtz.2	+	6	1834	c.1643_splice	c.e6-1	p.G548_splice	WRNIP1_uc003mua.2_Splice_Site_p.G523_splice	NM_020135	NP_064520	Q96S55	WRIP1_HUMAN	Werner helicase interacting protein isoform 1						DNA replication|DNA synthesis involved in DNA repair|regulation of DNA-dependent DNA replication initiation	mitochondrion|nucleus|perinuclear region of cytoplasm	ATP binding|ATPase activity|DNA binding|metal ion binding|protein binding			ovary(1)|pancreas(1)	2	Ovarian(93;0.0412)	all_hematologic(90;0.0895)				GTGTGTGGCAGGTCTGGCAGA	0.507													13	19					1.15088e-07	1.18963e-07	0.004007	1	0
SERPINB9	5272	broad.mit.edu	37	6	2900804	2900804	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:2900804G>A	uc003mug.2	-	2	163	c.42C>T	c.(40-42)CGC>CGT	p.R14R	uc003mue.2_RNA|SERPINB9_uc003muh.2_Silent_p.R14R	NM_004155	NP_004146	P50453	SPB9_HUMAN	serpin peptidase inhibitor, clade B, member 9	14					anti-apoptosis|cellular response to estrogen stimulus|immune response|mast cell mediated immunity|regulation of proteolysis	cytosol|extracellular space|nucleus	caspase inhibitor activity|protease binding|serine-type endopeptidase inhibitor activity				0	Ovarian(93;0.0412)	all_hematologic(90;0.108)				TCTTTAAAAGGCGTATGGCAA	0.473													87	149					0	0	0.014410	0	0
DSP	1832	broad.mit.edu	37	6	7580938	7580938	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:7580938G>A	uc003mxp.1	+	23	4794	c.4515G>A	c.(4513-4515)GCG>GCA	p.A1505A	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1505	Central fibrous rod domain.|Potential.		A -> V.		cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ATGAAAACGCGAGATTACAAA	0.433													34	52					0	0	0.017118	0	0
NEDD9	4739	broad.mit.edu	37	6	11191368	11191368	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:11191368G>A	uc003mzv.2	-	5	901	c.734C>T	c.(733-735)CCT>CTT	p.P245L	NEDD9_uc010joz.2_Missense_Mutation_p.P245L|NEDD9_uc003mzw.3_Missense_Mutation_p.P99L	NM_006403	NP_006394	Q14511	CASL_HUMAN	neural precursor cell expressed, developmentally	245					actin filament bundle assembly|cell adhesion|cell division|integrin-mediated signaling pathway|mitosis|regulation of growth	cell cortex|focal adhesion|Golgi apparatus|lamellipodium|nucleus	protein binding				0	Breast(50;0.0768)|Ovarian(93;0.152)	all_hematologic(90;0.135)	Epithelial(50;0.0647)|all cancers(50;0.179)			TCTCATGGGAGGGGGGAAGTC	0.527													34	52					0	0	0.013726	0	0
DTNBP1	84062	broad.mit.edu	37	6	15615570	15615570	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:15615570C>T	uc003nbm.2	-	6	587	c.416G>A	c.(415-417)TGT>TAT	p.C139Y	DTNBP1_uc003nbl.2_Missense_Mutation_p.C58Y|DTNBP1_uc003nbn.2_RNA|DTNBP1_uc003nbo.2_RNA|DTNBP1_uc003nbp.2_Missense_Mutation_p.C139Y|DTNBP1_uc010jph.2_Missense_Mutation_p.C126Y	NM_032122	NP_115498	Q96EV8	DTBP1_HUMAN	dystrobrevin binding protein 1 isoform a	139	Potential.				actin cytoskeleton reorganization|cellular membrane organization|neuron projection morphogenesis|post-Golgi vesicle-mediated transport|regulation of dopamine receptor signaling pathway	axon part|BLOC-1 complex|cell junction|dendritic spine|endoplasmic reticulum membrane|endosome membrane|growth cone|melanosome membrane|nucleus|postsynaptic density|postsynaptic membrane|sarcolemma|synaptic vesicle membrane|synaptosome	identical protein binding				0	Breast(50;0.0289)|Ovarian(93;0.103)	all_hematologic(90;0.0895)	Epithelial(50;0.211)			ACACTGCCCACATAAGTCTTC	0.383									Hermansky-Pudlak_syndrome				19	77					0	0	0.016522	0	0
NRSN1	140767	broad.mit.edu	37	6	24146056	24146056	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:24146056G>A	uc010jpq.1	+	4	707	c.470G>A	c.(469-471)CGA>CAA	p.R157Q		NM_080723	NP_542454	Q8IZ57	NRSN1_HUMAN	neurensin 1	157					nervous system development	growth cone|integral to membrane|neuronal cell body|transport vesicle					0						TTTAAAGAACGAATCGCAGAC	0.493													9	53					0	0	0.004482	0	0
HIST1H3D	8351	broad.mit.edu	37	6	26197197	26197197	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:26197197C>T	uc003ngv.2	-	2	679	c.282G>A	c.(280-282)CAG>CAA	p.Q94Q	HIST1H2BF_uc003ngx.2_5'Flank	NM_003530	NP_003521	P68431	H31_HUMAN	histone cluster 1, H3d	94					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding				0		all_hematologic(11;0.196)				CGCAGGCCTCCTGCAGCGCCA	0.577													48	75					0	0	0.014410	0	0
SCAND3	114821	broad.mit.edu	37	6	28541180	28541180	+	Missense_Mutation	SNP	G	A	A	rs142639079		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:28541180G>A	uc003nlo.2	-	4	3104	c.2486C>T	c.(2485-2487)CCG>CTG	p.P829L		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	829					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						cttggcaaccggaagtgctac	0													15	65					0	0	0.020292	0	0
POU5F1	5460	broad.mit.edu	37	6	31133727	31133727	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:31133727C>T	uc003nsv.2	-	2	557	c.503G>A	c.(502-504)GGG>GAG	p.G168E	POU5F1_uc003nsu.2_Missense_Mutation_p.G73E|uc011dnf.1_5'Flank	NM_002701	NP_002692	Q01860	PO5F1_HUMAN	POU domain, class 5, transcription factor 1	168	POU-specific.				anatomical structure morphogenesis|blastocyst development|BMP signaling pathway involved in heart induction|cardiac cell fate determination|cell fate commitment involved in formation of primary germ layers|mRNA transcription from RNA polymerase II promoter|negative regulation of gene silencing by miRNA|positive regulation of catenin import into nucleus|positive regulation of SMAD protein import into nucleus|positive regulation of transcription from RNA polymerase II promoter|regulation of asymmetric cell division|regulation of heart induction by regulation of canonical Wnt receptor signaling pathway|regulation of methylation-dependent chromatin silencing|response to wounding|somatic stem cell maintenance|somatic stem cell maintenance	cytosol|nucleoplasm|transcription factor complex	miRNA binding|sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|ubiquitin protein ligase binding		EWSR1/POU5F1(10)	skin(7)|salivary_gland(2)|bone(2)|lung(1)|ovary(1)	13						CAGGGTGAGCCCCACATCGGC	0.562			T	EWSR1	sarcoma								17	16					0	0	0.006122	0	0
CFB	629	broad.mit.edu	37	6	31914340	31914340	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:31914340G>A	uc003nyj.3	+	2	533	c.255G>A	c.(253-255)CTG>CTA	p.L85L	CFB_uc011dor.1_Silent_p.L587L|CFB_uc011dos.1_Silent_p.L85L|CFB_uc003nyi.2_Silent_p.L85L	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	85	Sushi 1.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						GGAGCACCCTGAAGACTCAAG	0.582													87	345					0	0	0.014410	0	0
NOTCH4	4855	broad.mit.edu	37	6	32182030	32182030	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:32182030G>A	uc003obb.2	-	13	2163	c.2024C>T	c.(2023-2025)TCC>TTC	p.S675F	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	675	EGF-like 17.|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						CACACATGAGGATCTGGTTGT	0.577													133	479					0	0	0.014410	0	0
GRM4	2914	broad.mit.edu	37	6	34008042	34008042	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:34008042C>T	uc003oir.3	-	7	1589	c.1419G>A	c.(1417-1419)GGG>GGA	p.G473G	GRM4_uc011dsn.1_Silent_p.G426G|GRM4_uc010jvh.2_Silent_p.G473G|GRM4_uc010jvi.2_Silent_p.G165G|GRM4_uc003oio.2_Silent_p.G165G|GRM4_uc003oip.2_RNA|GRM4_uc011dsl.1_Silent_p.G333G|GRM4_uc003oiq.2_Silent_p.G340G|GRM4_uc011dsm.1_Silent_p.G304G	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	473	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	TGTCATAGCGCCCAGGCGCAT	0.572													49	133					0	0	0.014410	0	0
ANKS1A	23294	broad.mit.edu	37	6	34937853	34937853	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:34937853C>T	uc003ojx.3	+	3	487	c.345C>T	c.(343-345)TAC>TAT	p.Y115Y	ANKS1A_uc011dss.1_Silent_p.Y115Y|ANKS1A_uc011dst.1_5'UTR|ANKS1A_uc010jvp.1_5'UTR|ANKS1A_uc010jvq.1_RNA|ANKS1A_uc010jvr.1_5'Flank	NM_015245	NP_056060	Q92625	ANS1A_HUMAN	ankyrin repeat and sterile alpha motif domain	115	ANK 2.					cytoplasm	protein binding			ovary(3)|upper_aerodigestive_tract(1)	4						AAGGCTGCTACCCTCTGCATT	0.512													28	41					0	0	0.007291	0	0
TCP11	6954	broad.mit.edu	37	6	35088743	35088743	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:35088743C>T	uc003okd.2	-	6	878	c.697G>A	c.(697-699)GAA>AAA	p.E233K	TCP11_uc003ojz.1_Missense_Mutation_p.E158K|TCP11_uc003oka.2_Missense_Mutation_p.E158K|TCP11_uc003okb.2_Missense_Mutation_p.E157K|TCP11_uc003okc.2_Missense_Mutation_p.E157K|TCP11_uc011dsu.1_Missense_Mutation_p.E215K|TCP11_uc011dsv.1_Missense_Mutation_p.E182K|TCP11_uc011dsw.1_Missense_Mutation_p.E187K	NM_001093728	NP_001087197	Q8WWU5	TCP11_HUMAN	t-complex 11 isoform 1	220					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(3)|skin(2)	5						ATGGAATGTTCCTGCAGGTGG	0.478													76	210					0	0	0.014410	0	0
TULP1	7287	broad.mit.edu	37	6	35477635	35477635	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:35477635C>T	uc003okv.3	-	6	582	c.570G>A	c.(568-570)GAG>GAA	p.E190E	TULP1_uc003okw.3_Silent_p.E137E	NM_003322	NP_003313	O00294	TULP1_HUMAN	tubby like protein 1	190					dendrite development|eye photoreceptor cell development|phagocytosis|photoreceptor cell maintenance|positive regulation of phagocytosis	cell junction|cytoplasm|extracellular region|photoreceptor inner segment|photoreceptor outer segment|synapse	actin filament binding|phosphatidylinositol-4,5-bisphosphate binding			ovary(2)|central_nervous_system(1)	3						TCTTGGTCCCCTCCCCTGCTG	0.572													53	196					0	0	0.014410	0	0
BTBD9	114781	broad.mit.edu	37	6	38142888	38142888	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:38142888G>A	uc003ooa.3	-	12	2288	c.1712C>T	c.(1711-1713)TCG>TTG	p.S571L	BTBD9_uc003ony.3_Missense_Mutation_p.S503L|BTBD9_uc010jwv.2_Missense_Mutation_p.S532L|BTBD9_uc010jww.2_RNA|BTBD9_uc010jwx.2_Missense_Mutation_p.S571L	NM_052893	NP_443125	Q96Q07	BTBD9_HUMAN	BTB (POZ) domain containing 9 isoform a	571					cell adhesion						0						CCCTGTCCCCGATTCCTCACT	0.597													20	85					0	0	0.010504	0	0
TFEB	7942	broad.mit.edu	37	6	41658525	41658526	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:41658525_41658526GG>AA	uc003oqs.1	-	4	645_646	c.343_344CC>TT	c.(343-345)CCG>TTG	p.P115L	TFEB_uc003oqt.1_Missense_Mutation_p.P115L|TFEB_uc003oqu.1_Missense_Mutation_p.P129L|TFEB_uc003oqv.1_Missense_Mutation_p.P115L|TFEB_uc010jxo.1_Missense_Mutation_p.P115L|TFEB_uc003oqx.1_Missense_Mutation_p.P115L|TFEB_uc003oqr.1_Intron|TFEB_uc003oqw.1_Missense_Mutation_p.P115L	NM_007162	NP_009093	P19484	TFEB_HUMAN	transcription factor EB	115				GSPKPPPAASPGVRAGHVLSSSAGNSAPN -> ALRNPHQP PPQGCELDTCCPPPLATVLPI (in Ref. 1; AAA36730).	embryonic placenta development|humoral immune response|positive regulation of transcription from RNA polymerase II promoter	cytoplasm	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(1)	1	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;7.61e-05)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00507)			TGGGGGTTTCGGAGAGCCCTGG	0.634			T	ALPHA	renal (childhood epithelioid)								7	36					0	0	0.004672	0	0
KIAA0240	23506	broad.mit.edu	37	6	42832733	42832733	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:42832733C>T	uc003osn.1	+	13	2940	c.2789C>T	c.(2788-2790)GCC>GTC	p.A930V	KIAA0240_uc011duw.1_Missense_Mutation_p.A930V|KIAA0240_uc003osp.1_Missense_Mutation_p.A930V	NM_015349	NP_056164	Q6AI39	K0240_HUMAN	hypothetical protein LOC23506	930										ovary(1)	1	Colorectal(47;0.196)		Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00524)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.104)			CCTCTGAAGGCCAGTCAGTGC	0.547													18	65					0	0	0.006122	0	0
SRF	6722	broad.mit.edu	37	6	43146124	43146124	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:43146124C>T	uc003oui.2	+	5	1730	c.1255C>T	c.(1255-1257)CCC>TCC	p.P419S	SRF_uc011dvf.1_Missense_Mutation_p.P215S	NM_003131	NP_003122	P11831	SRF_HUMAN	serum response factor (c-fos serum response	419					angiogenesis involved in wound healing|cell migration involved in sprouting angiogenesis|cellular senescence|heart looping|muscle cell homeostasis|neuron development|positive regulation of cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription via serum response element binding|regulation of smooth muscle cell differentiation|response to cytokine stimulus|response to hormone stimulus|response to toxin|transcription from RNA polymerase II promoter|trophectodermal cell differentiation	endoplasmic reticulum	protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|serum response element binding|transcription factor binding			ovary(1)|breast(1)|central_nervous_system(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.011)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			GATGTATGCCCCCACCTCGGG	0.627													14	71					0	0	0.003163	0	0
POLH	5429	broad.mit.edu	37	6	43582080	43582080	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:43582080C>T	uc003ovq.3	+	11	2232	c.1928C>T	c.(1927-1929)CCG>CTG	p.P643L	POLH_uc010jyu.2_Missense_Mutation_p.P519L|POLH_uc011dvl.1_RNA|POLH_uc003ovr.3_Missense_Mutation_p.P544L	NM_006502	NP_006493	Q9Y253	POLH_HUMAN	DNA-directed DNA polymerase eta	643					DNA replication|DNA synthesis involved in DNA repair|regulation of DNA repair|response to UV-C	cytoplasm|nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|metal ion binding			breast(2)	2	all_cancers(18;1.89e-05)|Lung NSC(15;0.00161)|all_lung(25;0.004)		all cancers(41;0.000753)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.0826)|OV - Ovarian serous cystadenocarcinoma(102;0.167)			TCCCTGGTACCGGTATGGGAT	0.502								DNA_polymerases_(catalytic_subunits)	Xeroderma_Pigmentosum				43	202					0	0	0.010771	0	0
RSPH9	221421	broad.mit.edu	37	6	43638552	43638553	+	Missense_Mutation	DNP	GG	CA	CA			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:43638552_43638553GG>CA	uc003ovw.1	+	5	723_724	c.697_698GG>CA	c.(697-699)GGC>CAC	p.G233H	RSPH9_uc003ovx.1_Missense_Mutation_p.G250A	NM_152732	NP_689945	Q9H1X1	RSPH9_HUMAN	radial spoke head 9 homolog	233					cilium axoneme assembly|cilium movement	cytoplasm|cytoskeleton				upper_aerodigestive_tract(1)|skin(1)	2						GATGGAGAGGGGCAATGCCCTG	0.634									Kartagener_syndrome				26	45					0	0	0.004672	0	0
CDC5L	988	broad.mit.edu	37	6	44413591	44413591	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:44413591C>T	uc003oxl.2	+	15	2550	c.2291C>T	c.(2290-2292)CCC>CTC	p.P764L		NM_001253	NP_001244	Q99459	CDC5L_HUMAN	CDC5-like	764	Interaction with PLRG1.|Potential.				cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	catalytic step 2 spliceosome|cytoplasm|nuclear speck|nucleolus	DNA binding|RNA binding			lung(3)|ovary(1)|kidney(1)|skin(1)	6	all_lung(25;0.00433)|Ovarian(13;0.0273)|all_hematologic(164;0.208)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			TCTGCTATTCCCCGGAGGCTA	0.398													7	32					0	0	0.001984	0	0
TDRD6	221400	broad.mit.edu	37	6	46659159	46659159	+	Silent	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:46659159T>C	uc003oyj.2	+	1	3294	c.3294T>C	c.(3292-3294)TGT>TGC	p.C1098C	TDRD6_uc010jze.2_Silent_p.C1092C	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	1098					cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			CTGTCAGATGTTCATTATCTG	0.363													28	116					0	0	0.007291	0	0
GPR115	221393	broad.mit.edu	37	6	47682221	47682221	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:47682221C>T	uc003oza.1	+	6	1498	c.1240C>T	c.(1240-1242)CTA>TTA	p.L414L	GPR115_uc003oyz.1_Silent_p.L471L|GPR115_uc003ozb.1_Silent_p.L412L	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	414	Helical; Name=1; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						CGTCTCAATCCTAAGCTTGGT	0.488													17	43					0	0	0.008871	0	0
MUT	4594	broad.mit.edu	37	6	49403220	49403220	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:49403220G>A	uc003ozg.3	-	12	2328	c.2073C>T	c.(2071-2073)TCC>TCT	p.S691S		NM_000255	NP_000246	P22033	MUTA_HUMAN	methylmalonyl Coenzyme A mutase precursor	691	B12-binding.				fatty acid beta-oxidation	mitochondrial matrix	cobalamin binding|metal ion binding|methylmalonyl-CoA mutase activity				0	Lung NSC(77;0.0376)				Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GCCGTCCAAGGGAGTTAAGTT	0.468													18	26					0	0	0.012319	0	0
MCM3	4172	broad.mit.edu	37	6	52144196	52144196	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:52144196G>A	uc003pan.1	-	5	843	c.733C>T	c.(733-735)CCT>TCT	p.P245S	MCM3_uc011dwu.1_Missense_Mutation_p.P199S	NM_002388	NP_002379	P25205	MCM3_HUMAN	minichromosome maintenance complex component 3	245					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	alpha DNA polymerase:primase complex|centrosome|MCM complex|perinuclear region of cytoplasm	ATP binding|DNA binding|helicase activity|protein binding			ovary(1)|lung(1)|skin(1)	3	Lung NSC(77;0.0931)					TTCTTTCCAGGAAGGCAACGG	0.522													41	54					0	0	0.006999	0	0
CD109	135228	broad.mit.edu	37	6	74497110	74497110	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:74497110C>T	uc003php.2	+	21	2916	c.2491C>T	c.(2491-2493)CCT>TCT	p.P831S	CD109_uc010kaz.2_Intron|CD109_uc003phq.2_Missense_Mutation_p.P831S|CD109_uc010kba.2_Missense_Mutation_p.P754S	NM_133493	NP_598000	Q6YHK3	CD109_HUMAN	CD109 antigen isoform 1 precursor	831						anchored to membrane|extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			large_intestine(2)|ovary(2)	4						GGGAGAAATTCCTATCACAGT	0.448													21	20					0	0	0.014323	0	0
FILIP1	27145	broad.mit.edu	37	6	76022214	76022214	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:76022214G>A	uc003pia.2	-	5	3707	c.3334C>T	c.(3334-3336)CCC>TCC	p.P1112S	FILIP1_uc003phy.1_Missense_Mutation_p.P1112S|FILIP1_uc003phz.2_Missense_Mutation_p.P1013S|FILIP1_uc010kbe.2_Missense_Mutation_p.P1115S|FILIP1_uc003pib.1_Missense_Mutation_p.P864S	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	1112										skin(3)|ovary(1)	4						TGATTCCTGGGAGAGCGAAGG	0.547													18	25					0	0	0.008871	0	0
SENP6	26054	broad.mit.edu	37	6	76412391	76412391	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:76412391C>T	uc003pid.3	+	19	2938	c.2319C>T	c.(2317-2319)TTC>TTT	p.F773F	SENP6_uc003pie.3_Silent_p.F766F|SENP6_uc010kbf.2_Intron	NM_015571	NP_056386	Q9GZR1	SENP6_HUMAN	SUMO1/sentrin specific peptidase 6 isoform 1	773	Protease.				proteolysis	cytoplasm|nucleus	cysteine-type peptidase activity			breast(2)|urinary_tract(1)|ovary(1)|lung(1)|skin(1)	6		all_hematologic(105;0.189)				TTGTTTGTTTCCCCGGTTTGG	0.318													9	17					0	0	0.008291	0	0
IMPG1	3617	broad.mit.edu	37	6	76751689	76751689	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:76751689G>A	uc003pik.1	-	2	352	c.222C>T	c.(220-222)TTC>TTT	p.F74F		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	74					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				CCCCCGTTGGGAAAAATGCGG	0.368													13	23					0	0	0.016723	0	0
ME1	4199	broad.mit.edu	37	6	84061792	84061792	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:84061792A>T	uc003pjy.2	-	4	535	c.429T>A	c.(427-429)GAT>GAA	p.D143E	ME1_uc011dzb.1_Missense_Mutation_p.D68E|ME1_uc011dzc.1_5'UTR	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	143					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	CCTTGATGACATCTTCTGGCC	0.318													3	4					0	0	0.009096	0	0
SPACA1	81833	broad.mit.edu	37	6	88757817	88757817	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:88757817C>T	uc003pmn.2	+	1	311	c.194C>T	c.(193-195)CCT>CTT	p.P65L		NM_030960	NP_112222	Q9HBV2	SACA1_HUMAN	sperm acrosome associated 1 precursor	65	Extracellular (Potential).					integral to membrane					0		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.11)		TACGCTCCGCCTGAAACCGAG	0.642													4	11					0	0	0.009096	0	0
PRDM1	639	broad.mit.edu	37	6	106547271	106547271	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:106547271G>A	uc003prd.2	+	4	742	c.508G>A	c.(508-510)GAG>AAG	p.E170K	PRDM1_uc003pre.2_Missense_Mutation_p.E36K	NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	170	SET.				negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		CTCTCCCCGGGAGCAAAACCT	0.498			D|N|Mis|F|S		DLBCL								16	27					0	0	0.004007	0	0
SEC63	11231	broad.mit.edu	37	6	108218933	108218933	+	Silent	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:108218933A>G	uc003psc.3	-	14	1629	c.1360T>C	c.(1360-1362)TTA>CTA	p.L454L	SEC63_uc003psb.3_Silent_p.L314L	NM_007214	NP_009145	Q9UGP8	SEC63_HUMAN	SEC63-like protein	454	SEC63 1.|Cytoplasmic (Potential).				protein folding|protein targeting to membrane	endoplasmic reticulum membrane|integral to membrane	heat shock protein binding|receptor activity|unfolded protein binding			ovary(1)|skin(1)	2		all_cancers(87;5.35e-06)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.00225)|Colorectal(196;0.0294)		BRCA - Breast invasive adenocarcinoma(108;0.0079)|Epithelial(106;0.0356)|all cancers(137;0.0525)|OV - Ovarian serous cystadenocarcinoma(136;0.054)		TCATCATCTAACACTGTTAAG	0.333													42	58					0	0	0.009718	0	0
LAMA4	3910	broad.mit.edu	37	6	112471788	112471788	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:112471788C>T	uc003pvu.2	-	17	2407	c.2098G>A	c.(2098-2100)GGA>AGA	p.G700R	LAMA4_uc003pvv.2_Missense_Mutation_p.G693R|LAMA4_uc003pvt.2_Missense_Mutation_p.G693R	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor	700	Domain II and I.|Potential.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		GCTAGGGCTCCACCCACACGC	0.502													35	50					0	0	0.017118	0	0
RSPH4A	345895	broad.mit.edu	37	6	116938061	116938061	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:116938061C>T	uc003pxe.2	+	1	420	c.275C>T	c.(274-276)TCC>TTC	p.S92F	RSPH4A_uc010kee.2_Missense_Mutation_p.S92F	NM_001010892	NP_001010892	Q5TD94	RSH4A_HUMAN	radial spoke head 4 homolog A isoform 1	92					cilium axoneme assembly|cilium movement	cytoplasm|cytoskeleton|radial spoke					0						GAGCCCTCTTCCTCTCCTTCT	0.632									Kartagener_syndrome				15	36					0	0	0.003163	0	0
ROS1	6098	broad.mit.edu	37	6	117709079	117709079	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:117709079G>A	uc003pxp.1	-	13	2077	c.1878C>T	c.(1876-1878)TTC>TTT	p.F626F	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	626	Fibronectin type-III 3.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		TTATGTTCAAGAAAATATGAG	0.453			T	GOPC|ROS1	glioblastoma|NSCLC								31	49					0	0	0.010818	0	0
CLVS2	134829	broad.mit.edu	37	6	123377146	123377146	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:123377146G>A	uc003pzi.1	+	5	1740	c.871G>A	c.(871-873)GAA>AAA	p.E291K		NM_001010852	NP_001010852	Q5SYC1	CLVS2_HUMAN	retinaldehyde binding protein 1-like 2	291					lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						AGTAGAGAAGGAACTCTCCCC	0.522													3	7					0	0	0.009096	0	0
RNF217	154214	broad.mit.edu	37	6	125397990	125397990	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:125397990G>A	uc003pzs.2	+	6	931	c.593G>A	c.(592-594)CGA>CAA	p.R198Q	RNF217_uc003pzr.2_Missense_Mutation_p.R255Q|RNF217_uc003pzt.2_RNA	NM_152553	NP_689766	Q8TC41	RN217_HUMAN	ring finger protein 217	198					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0			LUSC - Lung squamous cell carcinoma(4;0.0263)|Lung(4;0.0828)	GBM - Glioblastoma multiforme(226;0.0162)		AGATTAGTGCGAGGGTCAGTC	0.443													5	11					0	0	0.001984	0	0
SAMD3	154075	broad.mit.edu	37	6	130505278	130505278	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:130505278G>A	uc003qbv.2	-	8	950	c.624C>T	c.(622-624)CAC>CAT	p.H208H	SAMD3_uc003qbx.2_Silent_p.H208H|SAMD3_uc003qbw.2_Silent_p.H208H|SAMD3_uc010kfg.1_Silent_p.H208H|SAMD3_uc003qby.2_Silent_p.H208H|SAMD3_uc003qbz.1_Silent_p.H167H	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform	208										ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		CCAGGAAAGGGTGGGCCTGCA	0.483													13	29					0	0	0.004007	0	0
MOXD1	26002	broad.mit.edu	37	6	132641827	132641827	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:132641827C>T	uc003qdf.2	-	9	1405	c.1306G>A	c.(1306-1308)GGA>AGA	p.G436R	MOXD1_uc003qde.2_Missense_Mutation_p.G368R	NM_015529	NP_056344	Q6UVY6	MOXD1_HUMAN	monooxygenase, DBH-like 1 isoform 2	436	Lumenal (Potential).				catecholamine metabolic process	endoplasmic reticulum membrane|integral to membrane	copper ion binding|dopamine beta-monooxygenase activity			ovary(1)	1	Breast(56;0.0495)			OV - Ovarian serous cystadenocarcinoma(155;0.0132)|GBM - Glioblastoma multiforme(226;0.0191)		AGGTTATCTCCCTGAAACATA	0.318													6	8					0	0	0.001168	0	0
NMBR	4829	broad.mit.edu	37	6	142399866	142399866	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:142399866G>A	uc003qiu.2	-	2	738	c.597C>T	c.(595-597)ATC>ATT	p.I199I		NM_002511	NP_002502	P28336	NMBR_HUMAN	neuromedin B receptor	199	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	cytoplasm|integral to plasma membrane	bombesin receptor activity			central_nervous_system(3)|breast(1)	4	Breast(32;0.155)			OV - Ovarian serous cystadenocarcinoma(155;9.93e-06)|GBM - Glioblastoma multiforme(68;0.0013)		GAGGGTATGGGATACATGCTG	0.423													11	22					0	0	0.013537	0	0
KIF25	3834	broad.mit.edu	37	6	168440813	168440813	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:168440813C>T	uc003qwk.1	+	6	825	c.563C>T	c.(562-564)CCC>CTC	p.P188L	KIF25_uc003qwl.1_Missense_Mutation_p.P188L	NM_030615	NP_085118	Q9UIL4	KIF25_HUMAN	kinesin family member 25 isoform 1	188	Kinesin-motor.				microtubule-based movement|mitotic sister chromatid segregation	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity			ovary(1)|pancreas(1)	2		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		GCGAAGCACCCCACCCTGGTG	0.572													17	34					0	0	0.004007	0	0
ACTB	60	broad.mit.edu	37	7	5567919	5567920	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:5567919_5567920GG>AC	uc003sos.3	-	3	830_831	c.794_795CC>GT	c.(793-795)TCC>TGT	p.S265C	ACTB_uc003sor.3_Missense_Mutation_p.S143C|ACTB_uc003sot.3_Missense_Mutation_p.S265C|ACTB_uc003soq.3_Missense_Mutation_p.S143C|ACTB_uc010ksy.2_Missense_Mutation_p.S143C	NM_001101	NP_001092	P60709	ACTB_HUMAN	beta actin	265					'de novo' posttranslational protein folding|adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol|MLL5-L complex|NuA4 histone acetyltransferase complex|ribonucleoprotein complex	ATP binding|kinesin binding|nitric-oxide synthase binding|structural constituent of cytoskeleton				0		Ovarian(82;0.0606)		UCEC - Uterine corpus endometrioid carcinoma (126;0.175)|OV - Ovarian serous cystadenocarcinoma(56;4.24e-37)		CACCCAGGAAGGAAGGCTGGAA	0.609													25	63					0	0	0.004672	0	0
THSD7A	221981	broad.mit.edu	37	7	11446644	11446644	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:11446644G>A	uc003ssf.3	-	20	4207	c.3955C>T	c.(3955-3957)CAA>TAA	p.Q1319*		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	1319	Extracellular (Potential).|TSP type-1 13.					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		CCATCACCTTGAAAGGGCTGG	0.468										HNSCC(18;0.044)			6	12					0	0	0.001168	0	0
THSD7A	221981	broad.mit.edu	37	7	11676184	11676184	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:11676184C>T	uc003ssf.3	-	2	847	c.595G>A	c.(595-597)GAA>AAA	p.E199K		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	199	Extracellular (Potential).|TSP type-1 2.					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		GCAGAAAATTCAGACACGATG	0.592										HNSCC(18;0.044)			24	36					0	0	0.021523	0	0
AHR	196	broad.mit.edu	37	7	17379741	17379741	+	Missense_Mutation	SNP	T	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:17379741T>G	uc011jxz.1	+	10	2905	c.2292T>G	c.(2290-2292)TGT>TGG	p.C764W	AHR_uc003stt.3_RNA	NM_001621	NP_001612	P35869	AHR_HUMAN	aryl hydrocarbon receptor precursor	764					apoptosis|blood vessel development|cell cycle|regulation of B cell proliferation|response to stress|transcription from RNA polymerase II promoter|xenobiotic metabolic process	cytosolic aryl hydrocarbon receptor complex|transcription factor complex	Hsp90 protein binding|ligand-dependent nuclear receptor activity|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			urinary_tract(1)|kidney(1)|pancreas(1)	3	Lung NSC(10;0.0392)|all_lung(11;0.0754)					CTCAGACATGTTATGCTGGGG	0.463													16	40					0	0	0.010504	0	0
KLHL7	55975	broad.mit.edu	37	7	23183515	23183515	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:23183515C>T	uc003svs.3	+	6	957	c.664C>T	c.(664-666)CGC>TGC	p.R222C	KLHL7_uc003svr.3_Missense_Mutation_p.R200C|KLHL7_uc011jys.1_Missense_Mutation_p.R146C|KLHL7_uc011jyt.1_5'UTR|KLHL7_uc003svt.2_Missense_Mutation_p.R174C|KLHL7_uc011jyv.1_5'UTR	NM_001031710	NP_001026880	Q8IXQ5	KLHL7_HUMAN	kelch-like 7 isoform 1	222						Golgi apparatus|nucleolus|plasma membrane					0						TGAACCTAATCGCCAGCCATT	0.378													42	102					0	0	0.013114	0	0
NOD1	10392	broad.mit.edu	37	7	30492619	30492619	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:30492619G>A	uc003tav.2	-	6	937	c.414C>T	c.(412-414)GGC>GGT	p.G138G	NOD1_uc010kvs.2_Silent_p.G138G	NM_006092	NP_006083	Q9Y239	NOD1_HUMAN	nucleotide-binding oligomerization domain	138					activation of MAPK activity|detection of bacterium|induction of apoptosis|inflammatory response|innate immune response|interleukin-8 biosynthetic process|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of dendritic cell antigen processing and presentation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	basolateral plasma membrane|cytosol	ATP binding|CARD domain binding|caspase activator activity|peptidoglycan binding|protein homodimerization activity			ovary(1)|skin(1)	2						TGGAGTCACGGCCCAGATGGT	0.582													22	51					0	0	0.016522	0	0
NPSR1	387129	broad.mit.edu	37	7	34888189	34888189	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:34888189G>A	uc003teg.1	+	8	1067	c.939G>A	c.(937-939)GTG>GTA	p.V313V	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Silent_p.V313V|NPSR1_uc010kwt.1_Silent_p.V160V|NPSR1_uc010kwu.1_Silent_p.V103V|NPSR1_uc010kwv.1_Silent_p.V247V|NPSR1_uc003tei.1_Silent_p.V313V|NPSR1_uc010kww.1_Silent_p.V302V|NPSR1_uc011kar.1_Silent_p.V247V	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	313	Helical; Name=7; (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	ATGCCTCTGTGATCATTCAGA	0.502													58	143					0	0	0.014410	0	0
AOAH	313	broad.mit.edu	37	7	36616196	36616196	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:36616196C>T	uc003tfh.3	-	13	1406	c.1005G>A	c.(1003-1005)CAG>CAA	p.Q335Q	AOAH_uc010kxf.2_Silent_p.Q335Q|AOAH_uc011kba.1_Silent_p.Q303Q	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	335					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						TTGAAATATTCTGGTAGTCCC	0.303													8	33					0	0	0.004482	0	0
VPS41	27072	broad.mit.edu	37	7	38781671	38781671	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:38781671G>A	uc003tgy.2	-	25	2199	c.2173C>T	c.(2173-2175)CTA>TTA	p.L725L	VPS41_uc003tgz.2_Silent_p.L700L|VPS41_uc010kxn.2_Silent_p.L636L|VPS41_uc003tgx.2_RNA	NM_014396	NP_055211	P49754	VPS41_HUMAN	vacuolar protein sorting 41 isoform 1	725					Golgi vesicle transport|intracellular protein transport|vesicle-mediated transport	cytosol|Golgi-associated vesicle|HOPS complex|membrane fraction	zinc ion binding			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4						TGAATCAGTAGAATTGGGTCA	0.343													11	17					0	0	0.008291	0	0
POLD2	5425	broad.mit.edu	37	7	44156480	44156480	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:44156480G>A	uc010kxz.2	-	7	1366	c.716C>T	c.(715-717)TCC>TTC	p.S239F	POLD2_uc003tke.3_Missense_Mutation_p.S239F|POLD2_uc010kya.2_Missense_Mutation_p.S239F|POLD2_uc003tkf.3_Missense_Mutation_p.S239F	NM_006230	NP_006221	P49005	DPOD2_HUMAN	DNA-directed DNA polymerase delta 2	239					base-excision repair|DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	DNA binding|DNA-directed DNA polymerase activity|protein binding			ovary(2)	2						GATAACCCGGGAGACGTGGGC	0.657													14	22					0	0	0.003163	0	0
NUDCD3	23386	broad.mit.edu	37	7	44467277	44467277	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:44467277G>A	uc003tkz.2	-	3	721	c.535C>T	c.(535-537)CCC>TCC	p.P179S	NUDCD3_uc010kye.2_RNA	NM_015332	NP_056147	Q8IVD9	NUDC3_HUMAN	NudC domain containing 3	179											0						TAACTGTCGGGATTTTTCTGG	0.532													10	37					0	0	0.008291	0	0
CCM2	83605	broad.mit.edu	37	7	45104202	45104202	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:45104202C>T	uc003tmo.2	+	4	575	c.429C>T	c.(427-429)TCC>TCT	p.S143S	CCM2_uc003tmn.2_RNA|CCM2_uc003tmp.2_Silent_p.S85S|CCM2_uc003tmq.2_RNA|CCM2_uc003tmr.2_Silent_p.S143S|CCM2_uc011kcb.1_Silent_p.S106S|CCM2_uc011kcc.1_Silent_p.S136S|CCM2_uc003tms.2_Silent_p.S164S	NM_031443	NP_113631	Q9BSQ5	CCM2_HUMAN	cerebral cavernous malformation 2 isoform 2	143	PID.				endothelial tube morphogenesis|integrin-mediated signaling pathway|stress-activated MAPK cascade|vasculogenesis	cytoplasm	protein binding				0						CCGCCGTCTCCTATGTTCGGG	0.572									Familial_Cerebral_Cavernous_Angioma				8	30					0	0	0.006214	0	0
ABCA13	154664	broad.mit.edu	37	7	48450268	48450268	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:48450268G>A	uc003toq.2	+	40	12247	c.12222G>A	c.(12220-12222)ACG>ACA	p.T4074T	ABCA13_uc010kys.1_Silent_p.T1148T|ABCA13_uc010kyt.1_RNA	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4074	ABC transporter 1.				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TGACACTCACGAGGCAGGTAA	0.552													51	151					0	0	0.014410	0	0
IKZF1	10320	broad.mit.edu	37	7	50444296	50444296	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:50444296G>A	uc003tow.3	+	5	394	c.226G>A	c.(226-228)GAA>AAA	p.E76K	IKZF1_uc003tox.3_Missense_Mutation_p.E76K|IKZF1_uc003toy.3_Missense_Mutation_p.E76K|IKZF1_uc011kck.1_Intron|IKZF1_uc003toz.3_Missense_Mutation_p.E46K|IKZF1_uc010kyx.2_Intron	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	76					cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding	p.?(74)		haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				AATGAATGGGGAAGAATGTGC	0.498			D		ALL								23	60					0	0	0.014323	0	0
SEPT14	346288	broad.mit.edu	37	7	55912390	55912390	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:55912390G>A	uc003tqz.2	-	4	314	c.197C>T	c.(196-198)TCG>TTG	p.S66L		NM_207366	NP_997249	Q6ZU15	SEP14_HUMAN	septin 14	66	GTP (By similarity).				cell cycle|cell division	septin complex	GTP binding|protein binding				0	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			TATCAGTGTCGATTTTCCAAT	0.358													16	30					0	0	0.004990	0	0
ZNF716	441234	broad.mit.edu	37	7	57528444	57528444	+	Missense_Mutation	SNP	T	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:57528444T>A	uc011kdi.1	+	4	389	c.277T>A	c.(277-279)TTC>ATC	p.F93I		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						ATGTTCTCATTTCACCCAAGA	0.318													6	17					0	0	0.001168	0	0
WBSCR17	64409	broad.mit.edu	37	7	71036340	71036340	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:71036340C>T	uc003tvy.2	+	6	1033	c.1033C>T	c.(1033-1035)CCT>TCT	p.P345S	WBSCR17_uc003tvz.2_Missense_Mutation_p.P44S	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	345	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				TCTTCTGGATCCTGGCATGGA	0.502													35	95					0	0	0.019004	0	0
GTF2IRD1	9569	broad.mit.edu	37	7	73938417	73938417	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:73938417C>T	uc003uaq.2	+	8	1416	c.1023C>T	c.(1021-1023)TTC>TTT	p.F341F	GTF2IRD1_uc010lbq.2_Silent_p.F373F|GTF2IRD1_uc003uap.2_Silent_p.F341F|GTF2IRD1_uc003uar.1_Silent_p.F341F	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	341						nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						GGGACGCCTTCATAAAGGAAA	0.612													4	15					0	0	0.009096	0	0
CD36	948	broad.mit.edu	37	7	80285980	80285980	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:80285980A>G	uc003uhc.2	+	7	929	c.245A>G	c.(244-246)AAC>AGC	p.N82S	CD36_uc003uhd.3_Missense_Mutation_p.N82S|CD36_uc011kgv.1_Missense_Mutation_p.N6S|CD36_uc003uhe.3_Missense_Mutation_p.N82S|CD36_uc003uhf.3_Missense_Mutation_p.N82S|CD36_uc003uhg.3_Missense_Mutation_p.N82S|CD36_uc003uhh.3_Missense_Mutation_p.N82S	NM_001127444	NP_001120916	P16671	CD36_HUMAN	CD36 antigen	82	Extracellular (Potential).				cell adhesion|cGMP-mediated signaling|cholesterol transport|lipid metabolic process|lipid storage|lipoprotein transport|low-density lipoprotein particle clearance|nitric oxide mediated signal transduction|plasma membrane long-chain fatty acid transport|platelet activation|platelet degranulation|positive regulation of cell-matrix adhesion|positive regulation of macrophage derived foam cell differentiation	integral to plasma membrane|membrane fraction|platelet alpha granule membrane	lipid binding|low-density lipoprotein receptor activity|thrombospondin receptor activity|transforming growth factor beta binding			ovary(1)	1						AACAGCAGCAACATTCAAGTT	0.388													7	17					0	0	0.001984	0	0
HGF	3082	broad.mit.edu	37	7	81372669	81372669	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:81372669C>T	uc003uhl.2	-	7	1030	c.865G>A	c.(865-867)GCT>ACT	p.A289T	HGF_uc003uhm.2_Missense_Mutation_p.A284T|HGF_uc003uhn.1_Missense_Mutation_p.E289K|HGF_uc003uho.1_Missense_Mutation_p.E284K	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	289					epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						CTTCACTTACCGCATGTTTTA	0.448													9	23					0	0	0.004482	0	0
PCLO	27445	broad.mit.edu	37	7	82785576	82785576	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:82785576C>T	uc003uhx.2	-	2	670	c.381G>A	c.(379-381)GGG>GGA	p.G127G	PCLO_uc003uhv.2_Silent_p.G127G	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	127					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AAGGACTCCTCCCAGGCAATT	0.478													19	62					0	0	0.014323	0	0
ABCB1	5243	broad.mit.edu	37	7	87173569	87173569	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:87173569G>A	uc003uiz.1	-	18	2505	c.2087C>T	c.(2086-2088)TCC>TTC	p.S696F	ABCB1_uc011khc.1_Missense_Mutation_p.S632F	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	696	Cytoplasmic (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	CCTCCAAAAGGAAACTGGAGG	0.328													25	49					0	0	0.009535	0	0
C7orf63	79846	broad.mit.edu	37	7	89897659	89897659	+	Missense_Mutation	SNP	G	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:89897659G>T	uc010lep.2	+	6	744	c.493G>T	c.(493-495)GAT>TAT	p.D165Y	C7orf63_uc003ukf.2_RNA|C7orf63_uc003ukg.2_5'UTR|C7orf63_uc011khj.1_Intron|C7orf63_uc010leo.2_Missense_Mutation_p.D163Y	NM_001039706	NP_001034795	A5D8W1	CG063_HUMAN	hypothetical protein LOC79846 isoform 1	165							binding			ovary(1)	1						GTGTATTGTTGATTTTTATCA	0.338													8	12					5.4927e-09	5.69103e-09	0.004482	1	0
AKAP9	10142	broad.mit.edu	37	7	91651606	91651607	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:91651606_91651607CC>TT	uc003ulg.2	+	13	4117_4118	c.3892_3893CC>TT	c.(3892-3894)CCA>TTA	p.P1298L	AKAP9_uc003ule.2_Missense_Mutation_p.P1310L|AKAP9_uc003ulf.2_Missense_Mutation_p.P1298L|AKAP9_uc003uli.2_Missense_Mutation_p.P923L	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	1310					G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AGAAAACCTTCCAAAAGAGGAA	0.342			T	BRAF	papillary thyroid								18	57					0	0	0.004672	0	0
SAMD9	54809	broad.mit.edu	37	7	92731571	92731571	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:92731571G>A	uc003umf.2	-	3	4096	c.3840C>T	c.(3838-3840)CCC>CCT	p.P1280P	SAMD9_uc003umg.2_Silent_p.P1280P	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1280						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			TATTGTTCCTGGGTTTTAGCA	0.299													18	38					0	0	0.008871	0	0
SAMD9	54809	broad.mit.edu	37	7	92731787	92731787	+	Silent	SNP	G	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:92731787G>T	uc003umf.2	-	3	3880	c.3624C>A	c.(3622-3624)ATC>ATA	p.I1208I	SAMD9_uc003umg.2_Silent_p.I1208I	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1208						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			GGAGAATTTGGATTGTGTAAA	0.348													20	50					7.45023e-12	7.76801e-12	0.010504	1	0
SAMD9	54809	broad.mit.edu	37	7	92734480	92734480	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:92734480G>A	uc003umf.2	-	3	1187	c.931C>T	c.(931-933)CCA>TCA	p.P311S	SAMD9_uc003umg.2_Missense_Mutation_p.P311S	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	311						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			GAGAACTGTGGAATAATGTCC	0.338													13	33					0	0	0.013537	0	0
TRRAP	8295	broad.mit.edu	37	7	98608812	98608812	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:98608812G>A	uc003upp.2	+	70	11243	c.11034G>A	c.(11032-11034)CTG>CTA	p.L3678L	TRRAP_uc011kis.1_Silent_p.L3649L|TRRAP_uc003upr.2_Silent_p.L3384L|TRRAP_uc003ups.2_5'Flank	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	3678	PI3K/PI4K.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			AGCTGGCTCTGATAGGCTTCG	0.552													31	113					0	0	0.010818	0	0
CYP3A43	64816	broad.mit.edu	37	7	99447251	99447251	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:99447251C>T	uc003urx.1	+	7	707	c.604C>T	c.(604-606)CCC>TCC	p.P202S	CYP3A43_uc003ury.1_Missense_Mutation_p.P202S|CYP3A43_uc003urz.1_Missense_Mutation_p.P202S|CYP3A43_uc003usa.1_RNA|CYP3A43_uc010lgi.1_Intron|CYP3A43_uc003usb.1_Missense_Mutation_p.S64F	NM_057095	NP_476436	Q9HB55	CP343_HUMAN	cytochrome P450, family 3, subfamily A,	202			Missing (in allele CYP3A43*2).		xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)				Cetirizine(DB00341)|Doxycycline(DB00254)	TCCACAAGATCCCTTTCTGAA	0.318													22	44					0	0	0.010504	0	0
MUC17	140453	broad.mit.edu	37	7	100681981	100681981	+	Silent	SNP	C	G	G	rs148310097	byFrequency	TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:100681981C>G	uc003uxp.1	+	3	7337	c.7284C>G	c.(7282-7284)GTC>GTG	p.V2428V	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2428	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|39.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GCACACCTGTCACCACTTCTA	0.522													5	621					0	0	0.001984	0	0
LRWD1	222229	broad.mit.edu	37	7	102106487	102106487	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:102106487C>T	uc003uzn.2	+	2	442	c.304C>T	c.(304-306)CCC>TCC	p.P102S	ALKBH4_uc003uzl.2_5'Flank|ALKBH4_uc003uzm.2_5'Flank|LRWD1_uc003uzo.2_5'UTR	NM_152892	NP_690852	Q9UFC0	LRWD1_HUMAN	leucine-rich repeats and WD repeat domain	102	LRR 4.				chromatin modification|DNA-dependent DNA replication initiation|establishment of protein localization to chromatin|G1 phase of mitotic cell cycle	centromeric heterochromatin|nuclear origin of replication recognition complex|telomeric heterochromatin	chromatin binding|methyl-CpG binding|methylated histone residue binding			skin(1)	1						GGAGGGCAACCCCTTCCTGAC	0.622													15	24					0	0	0.020292	0	0
SRPK2	6733	broad.mit.edu	37	7	104782625	104782625	+	Missense_Mutation	SNP	T	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:104782625T>A	uc003vct.2	-	10	1527	c.1340A>T	c.(1339-1341)GAG>GTG	p.E447V	SRPK2_uc003vcu.2_Missense_Mutation_p.E447V|SRPK2_uc003vcv.2_Missense_Mutation_p.E458V|SRPK2_uc003vcw.1_Missense_Mutation_p.E447V	NM_182691	NP_872633	P78362	SRPK2_HUMAN	serine/arginine-rich protein-specific kinase 2	447	Protein kinase.				angiogenesis|cell differentiation|intracellular protein kinase cascade|negative regulation of viral genome replication|nuclear speck organization|positive regulation of cell cycle|positive regulation of cell proliferation|positive regulation of gene expression|positive regulation of neuron apoptosis|positive regulation of viral genome replication|spliceosome assembly	cytoplasm|nucleolus	14-3-3 protein binding|ATP binding|magnesium ion binding|protein serine/threonine kinase activity			central_nervous_system(3)|ovary(2)|upper_aerodigestive_tract(1)	6						GAACTGTGACTCGGGAATTTT	0.443													41	71					0	0	0.009718	0	0
LAMB4	22798	broad.mit.edu	37	7	107674792	107674792	+	Splice_Site	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:107674792C>T	uc010ljo.1	-	31	4764	c.4680_splice	c.e31-1	p.E1560_splice	LAMB4_uc003vey.2_Splice_Site_p.E1560_splice|LAMB4_uc010ljp.1_Splice_Site_p.E529_splice	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor						cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						TGCTGCTTTCCTAAGGTAAGA	0.328													16	35					0	0	0.006122	0	0
EIF3IP1	442720	broad.mit.edu	37	7	109599765	109599765	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:109599765G>A	uc003vfp.1	-	1	506	c.333C>T	c.(331-333)ATC>ATT	p.I111I		NR_003024				Homo sapiens eukaryotic translation initiation factor 3, subunit I pseudogene 1 (EIF3IP1), non-coding RNA.												0						GGCCTGCAATGATGCACTCCC	0.488													11	15					0	0	0.016723	0	0
MET	4233	broad.mit.edu	37	7	116339180	116339180	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:116339180C>T	uc003vij.2	+	2	229	c.42C>T	c.(40-42)CTC>CTT	p.L14L	MET_uc010lkh.2_Silent_p.L14L|MET_uc011knc.1_Silent_p.L14L|MET_uc011knd.1_Silent_p.L14L|MET_uc011kne.1_Silent_p.L14L|MET_uc011knf.1_Silent_p.L14L|MET_uc011kng.1_Silent_p.L14L|MET_uc011knh.1_Silent_p.L14L|MET_uc011kni.1_Silent_p.L14L|MET_uc003vii.1_Silent_p.L33L|MET_uc010lkg.2_Silent_p.L14L|MET_uc011kmz.1_Silent_p.L14L|MET_uc011kna.1_Silent_p.L14L|MET_uc011knb.1_Silent_p.L14L	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	14					axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			TCCTCGTGCTCCTGTTTACCT	0.493			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				4	19					0	0	0.014758	0	0
CADPS2	93664	broad.mit.edu	37	7	121960381	121960381	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:121960381C>T	uc010lkp.2	-	29	3892	c.3729G>A	c.(3727-3729)AGG>AGA	p.R1243R	CADPS2_uc011knx.1_Silent_p.R618R|CADPS2_uc003vkg.3_Silent_p.R897R|CADPS2_uc010lkq.2_Silent_p.R1202R	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	1243					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						ATCGAAAGTCCCTGTAGGTTT	0.388													37	128					0	0	0.010771	0	0
GRM8	2918	broad.mit.edu	37	7	126173342	126173342	+	Silent	SNP	G	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:126173342G>T	uc003vlr.2	-	8	2405	c.2094C>A	c.(2092-2094)ATC>ATA	p.I698I	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Silent_p.I698I|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	698	Helical; Name=4; (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	GGCTGAAGGTGATCACCAGCT	0.507										HNSCC(24;0.065)			22	34					1.2644e-06	1.30494e-06	0.010504	1	0
FSCN3	29999	broad.mit.edu	37	7	127238524	127238524	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:127238524C>T	uc003vmd.1	+	4	1215	c.996C>T	c.(994-996)CCC>CCT	p.P332P	FSCN3_uc011koh.1_Silent_p.P198P|FSCN3_uc010llc.1_Silent_p.P332P	NM_020369	NP_065102	Q9NQT6	FSCN3_HUMAN	fascin 3	332						actin cytoskeleton|cytoplasm	actin filament binding|protein binding, bridging			ovary(1)	1						ATGGGCACCCCCTGGAGTCTG	0.557													44	86					0	0	0.011902	0	0
PAX4	5078	broad.mit.edu	37	7	127253582	127253582	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:127253582G>A	uc010lld.1	-	5	749	c.543C>T	c.(541-543)TTC>TTT	p.F181F	PAX4_uc003vmf.2_Silent_p.F179F|PAX4_uc003vmg.1_Silent_p.F181F|PAX4_uc003vmh.2_Silent_p.F179F	NM_006193	NP_006184	O43316	PAX4_HUMAN	paired box 4	189	Homeobox.				cell differentiation|endocrine pancreas development|organ morphogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GCCCACGCTGGAACTCTGCGG	0.587													25	46					0	0	0.018920	0	0
OPN1SW	611	broad.mit.edu	37	7	128415840	128415840	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:128415840C>T	uc003vnt.3	-	1	5	c.5G>A	c.(4-6)AGA>AAA	p.R2K		NM_001708	NP_001699	P03999	OPSB_HUMAN	opsin 1 (cone pigments), short-wave-sensitive	2	Extracellular (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity				0						CGACATTTTTCTCATGGATGC	0.507													18	26					0	0	0.004990	0	0
FLNC	2318	broad.mit.edu	37	7	128481572	128481572	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:128481572C>T	uc003vnz.3	+	13	2281	c.2072C>T	c.(2071-2073)ACC>ATC	p.T691I	FLNC_uc003voa.3_Missense_Mutation_p.T691I	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	691	Filamin 5.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GCTGAGTTCACCATTGATGCT	0.607													53	179					0	0	0.014410	0	0
TMEM209	84928	broad.mit.edu	37	7	129832632	129832632	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:129832632G>A	uc003vpn.2	-	6	728	c.605C>T	c.(604-606)CCG>CTG	p.P202L	TMEM209_uc010lmc.1_Missense_Mutation_p.P202L	NM_032842	NP_116231	Q96SK2	TM209_HUMAN	transmembrane protein 209	202	Ser-rich.					integral to membrane				ovary(2)|large_intestine(1)	3	Melanoma(18;0.0435)					GGTAGGGTACGGAGAAGGAGG	0.408													7	54					0	0	0.003080	0	0
MKLN1	4289	broad.mit.edu	37	7	131060250	131060250	+	Missense_Mutation	SNP	C	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:131060250C>G	uc011kpm.1	+	2	230	c.166C>G	c.(166-168)CAG>GAG	p.Q56E	MKLN1_uc011kpl.1_Missense_Mutation_p.Q33E|MKLN1_uc010lmh.2_Missense_Mutation_p.Q56E|MKLN1_uc003vqs.2_5'UTR	NM_013255	NP_037387	Q9UL63	MKLN1_HUMAN	muskelin 1, intracellular mediator containing	56					signal transduction	cytoplasm	protein binding			breast(1)	1	Melanoma(18;0.162)					CTATCCTCCCCAGGTAAGATT	0.323													14	31					0	0	0.006122	0	0
DGKI	9162	broad.mit.edu	37	7	137293795	137293795	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:137293795G>A	uc003vtt.2	-	10	1085	c.1084C>T	c.(1084-1086)CGT>TGT	p.R362C	DGKI_uc003vtu.2_Missense_Mutation_p.R62C	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	362					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						ACAAAAGGACGACCTTTGTTT	0.453													3	11					0	0	0.009096	0	0
CREB3L2	64764	broad.mit.edu	37	7	137593038	137593039	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:137593038_137593039GG>AA	uc003vtw.2	-	5	1122_1123	c.727_728CC>TT	c.(727-729)CCC>TTC	p.P243F	CREB3L2_uc003vtx.1_Missense_Mutation_p.P243F|CREB3L2_uc003vtv.2_Missense_Mutation_p.P180F	NM_194071	NP_919047	Q70SY1	CR3L2_HUMAN	cAMP responsive element binding protein 3-like	243	Cytoplasmic (Potential).				chondrocyte differentiation|positive regulation of transcription, DNA-dependent|response to endoplasmic reticulum stress|response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	cAMP response element binding|protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		FUS/CREB3L2(158)	soft_tissue(158)|upper_aerodigestive_tract(1)|ovary(1)	160						GAGGGCGGAGGGGGCCCGGGGT	0.653			T	FUS	fibromyxoid sarcoma								3	3					0	0	0.004672	0	0
AKR1D1	6718	broad.mit.edu	37	7	137792307	137792307	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:137792307G>A	uc003vtz.2	+	7	905	c.836G>A	c.(835-837)AGG>AAG	p.R279K	AKR1D1_uc011kqe.1_Missense_Mutation_p.R279K|AKR1D1_uc011kqf.1_Missense_Mutation_p.R238K|AKR1D1_uc010lmy.1_RNA	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1	279	NADP.				androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						AATCTTGAAAGGATCAAAGAA	0.358													20	54					0	0	0.008871	0	0
TRIM24	8805	broad.mit.edu	37	7	138252356	138252356	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:138252356A>C	uc003vuc.2	+	10	1876	c.1661A>C	c.(1660-1662)AAC>ACC	p.N554T	TRIM24_uc003vub.2_Missense_Mutation_p.N520T	NM_015905	NP_056989	O15164	TIF1A_HUMAN	transcriptional intermediary factor 1 alpha	554					cellular response to estrogen stimulus|protein catabolic process|regulation of apoptosis|regulation of protein stability|transcription from RNA polymerase II promoter	cytoplasm	chromatin binding|estrogen response element binding|histone acetyl-lysine binding|p53 binding|transcription coactivator activity|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(3)|ovary(2)|stomach(1)|breast(1)|skin(1)	8						ATAAAGCCAAACCCCCTACAG	0.423													8	24					0	0	0.016723	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138429869	138429869	+	Missense_Mutation	SNP	T	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:138429869T>A	uc003vuf.2	-	13	1715	c.1477A>T	c.(1477-1479)AAT>TAT	p.N493Y	ATP6V0A4_uc003vug.2_Missense_Mutation_p.N493Y|ATP6V0A4_uc003vuh.2_Missense_Mutation_p.N493Y	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	493	Cytoplasmic (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						TCAACTCACTTCCATGTGCCG	0.498													44	53					0	0	0.014410	0	0
KLRG2	346689	broad.mit.edu	37	7	139164442	139164442	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:139164442C>T	uc003vvb.2	-	3	1005	c.936G>A	c.(934-936)CAG>CAA	p.Q312Q	KLRG2_uc010lnc.2_Intron	NM_198508	NP_940910	A4D1S0	KLRG2_HUMAN	killer cell lectin-like receptor subfamily G,	312	C-type lectin.					integral to membrane	sugar binding			central_nervous_system(1)	1	Melanoma(164;0.233)					CTTCCCAGGCCTGCGCTTCTG	0.612													18	77					0	0	0.007413	0	0
BRAF	673	broad.mit.edu	37	7	140453193	140453193	+	Missense_Mutation	SNP	T	G	G	rs121913370		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:140453193T>G	uc003vwc.3	-	15	1803	c.1742A>C	c.(1741-1743)AAT>ACT	p.N581T		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	581	Protein kinase.		N -> D (in CFC syndrome).|N -> S (in a colorectal adenocarcinoma sample; somatic mutation).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.N581S(7)|p.N581Y(1)|p.N581I(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	AAGAAATATATCTGAGGTGTA	0.358		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				6	27					0	0	0.001984	0	0
CLEC5A	23601	broad.mit.edu	37	7	141629928	141629928	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:141629928C>T	uc003vwv.1	-	7	740	c.543G>A	c.(541-543)AGG>AGA	p.R181R	CLEC5A_uc011krm.1_3'UTR|CLEC5A_uc003vww.1_Silent_p.R180R|CLEC5A_uc010lnq.1_Silent_p.R158R|CLEC5A_uc010lnr.1_RNA	NM_013252	NP_037384	Q9NY25	CLC5A_HUMAN	C-type lectin, superfamily member 5	181	C-type lectin.|Extracellular (Potential).				anti-apoptosis|cellular defense response|innate immune response|interspecies interaction between organisms|osteoblast development	cell surface|integral to plasma membrane	sugar binding|viral receptor activity				0	Melanoma(164;0.0171)					TCTCACAGATCCTGCGGTAGC	0.413													9	34					0	0	0.006214	0	0
Unknown	0	broad.mit.edu	37	7	142499006	142499006	+	RNA	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:142499006C>T	uc011ksh.1	+	3		c.385C>T			uc011ksi.1_RNA|uc003vzw.1_RNA|uc010loj.1_RNA|uc003wad.2_RNA|uc003wag.1_3'UTR|uc003wbe.3_RNA|uc003wbf.3_RNA|uc003wbg.3_RNA|uc003wbh.3_Missense_Mutation_p.R141C|uc003wbi.3_RNA|uc003wbj.3_RNA|uc003wbm.3_RNA|uc003wbn.3_RNA|uc010los.2_RNA					Homo sapiens mRNA for T-cell receptor beta chain, partial cds, clone:TCRVB.3.																		CAACCACTTCCGCTGTCAAGT	0.632													29	99					0	0	0.009535	0	0
TAS2R41	259287	broad.mit.edu	37	7	143175380	143175380	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:143175380C>T	uc003wdc.1	+	1	415	c.415C>T	c.(415-417)CTG>TTG	p.L139L	uc003wda.2_Intron	NM_176883	NP_795364	P59536	T2R41_HUMAN	taste receptor, type 2, member 41	139	Helical; Name=4; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			pancreas(1)|skin(1)	2	Melanoma(164;0.15)					GGGCTCTGTCCTGATCTCCTT	0.463													13	41					0	0	0.020292	0	0
OR2F2	135948	broad.mit.edu	37	7	143632533	143632533	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:143632533G>A	uc011ktv.1	+	1	208	c.208G>A	c.(208-210)GAT>AAT	p.D70N		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	70	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					CTCCCTTGTCGATGTCTCCTA	0.502													104	180					0	0	0.014410	0	0
OR2A25	392138	broad.mit.edu	37	7	143771818	143771818	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:143771818G>A	uc011ktx.1	+	1	506	c.506G>A	c.(505-507)GGA>GAA	p.G169E		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	169	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					TCCTTCTGTGGACCCCAGAAA	0.448													69	127					0	0	0.014410	0	0
OR2A14	135941	broad.mit.edu	37	7	143827001	143827001	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:143827001C>T	uc011kua.1	+	1	796	c.796C>T	c.(796-798)CCT>TCT	p.P266S		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	266	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					GTCCCGCCATCCTGAGGAGCA	0.547													37	157					0	0	0.010771	0	0
OR2A14	135941	broad.mit.edu	37	7	143827081	143827081	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:143827081G>A	uc011kua.1	+	1	876	c.876G>A	c.(874-876)AGG>AGA	p.R292R		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	292	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					ATAGCCTAAGGAATGCAGAGG	0.557													51	192					0	0	0.014410	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147600726	147600726	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:147600726C>T	uc003weu.1	+	14	2684	c.2168C>T	c.(2167-2169)CCT>CTT	p.P723L		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	723	Extracellular (Potential).|Fibrinogen C-terminal.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GGCTCTGGGCCTGGAATCCAG	0.512										HNSCC(39;0.1)			10	26					0	0	0.010729	0	0
EZH2	2146	broad.mit.edu	37	7	148508726	148508727	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:148508726_148508727GT>AA	uc003wfd.1	-	16	2088_2089	c.1922_1923AC>TT	c.(1921-1923)TAC>TTT	p.Y641F	EZH2_uc011kug.1_Missense_Mutation_p.Y590F|EZH2_uc003wfb.1_Missense_Mutation_p.Y646F|EZH2_uc003wfc.1_Missense_Mutation_p.Y602F|EZH2_uc011kuh.1_Missense_Mutation_p.Y632F	NM_004456	NP_004447	Q15910	EZH2_HUMAN	enhancer of zeste 2 isoform a	641	SET.				negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	DNA binding|histone-lysine N-methyltransferase activity|protein binding	p.Y646F(42)|p.Y646S(13)|p.Y646C(5)		haematopoietic_and_lymphoid_tissue(180)|skin(2)|large_intestine(1)	183	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00239)			CCTCTCCACAGTATTCTGAGAT	0.376			Mis		DLBCL								8	32					0	0	0.004672	0	0
ZNF425	155054	broad.mit.edu	37	7	148802070	148802070	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:148802070C>T	uc003wfj.2	-	4	966	c.893G>A	c.(892-894)GGG>GAG	p.G298E		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	298					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			CGGCCGCTCCCCGCGGTGTAG	0.667													13	28					0	0	0.013537	0	0
ZNF425	155054	broad.mit.edu	37	7	148802164	148802164	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:148802164C>T	uc003wfj.2	-	4	872	c.799G>A	c.(799-801)GTC>ATC	p.V267I		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	267	C2H2-type 2.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			CCGGTGTGGACAACCTGATGA	0.612													14	65					0	0	0.016723	0	0
SSPO	23145	broad.mit.edu	37	7	149500848	149500848	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:149500848C>T	uc010lpk.2	+	56	8166	c.8166C>T	c.(8164-8166)TCC>TCT	p.S2722S		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2722	TSP type-1 6.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CAGCCTGGTCCTCCTGGGCTC	0.687													6	10					0	0	0.001168	0	0
SSPO	23145	broad.mit.edu	37	7	149511897	149511897	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:149511897C>T	uc010lpk.2	+	75	10447	c.10447C>T	c.(10447-10449)CCC>TCC	p.P3483S		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	3483	TSP type-1 14.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GCCATGGTCTCCCTGCGACAT	0.697													4	3					0	0	0.014758	0	0
C7orf29	113763	broad.mit.edu	37	7	150027718	150027718	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:150027718C>T	uc003wgy.2	+	1	781	c.225C>T	c.(223-225)ACC>ACT	p.T75T	LRRC61_uc003wgv.2_Intron|LRRC61_uc003wgx.2_Intron|LRRC61_uc003wgw.2_Intron	NM_138434	NP_612443	Q96FA7	CG029_HUMAN	hypothetical protein LOC113763	75										ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.011)			TGCTGGCCACCTTGCTGGACC	0.612													31	91					0	0	0.007291	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325035	150325035	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:150325035C>T	uc003whn.2	-	3	1075	c.651G>A	c.(649-651)GAG>GAA	p.E217E	GIMAP6_uc003whm.2_Silent_p.E137E	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	217							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CTTCAACTTTCTCCATGAGCT	0.517													96	173					0	0	0.014410	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439530	150439530	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:150439530G>A	uc003whr.1	+	3	655	c.303G>A	c.(301-303)GGG>GGA	p.G101G	GIMAP5_uc010lpu.2_5'UTR	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	101	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGAACATCGGGGACTGCTACC	0.577													17	91					0	0	0.007413	0	0
ABP1	26	broad.mit.edu	37	7	150554734	150554734	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:150554734G>A	uc003why.1	+	3	5394	c.1176G>A	c.(1174-1176)CCG>CCA	p.P392P	ABP1_uc003whz.1_Silent_p.P392P|ABP1_uc003wia.1_Silent_p.P392P	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	392					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	TCGACTGCCCGGAGACCGCCA	0.607													48	89					0	0	0.014410	0	0
MSR1	4481	broad.mit.edu	37	8	16032717	16032717	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:16032717G>A	uc003wwz.2	-	3	394	c.196C>T	c.(196-198)CCT>TCT	p.P66S	MSR1_uc010lsu.2_Missense_Mutation_p.P84S|MSR1_uc003wxa.2_Missense_Mutation_p.P66S|MSR1_uc003wxb.2_Missense_Mutation_p.P66S|MSR1_uc011kxz.1_Intron	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	66	Helical; Signal-anchor for type II membrane protein; (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		CCAATGAGAGGGATGAGAACT	0.413													18	22					0	0	0.010504	0	0
STC1	6781	broad.mit.edu	37	8	23709810	23709810	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:23709810C>T	uc003xdw.1	-	2	490	c.206G>A	c.(205-207)GGG>GAG	p.G69E		NM_003155	NP_003146	P52823	STC1_HUMAN	stanniocalcin 1 precursor	69					cell surface receptor linked signaling pathway|cell-cell signaling|cellular calcium ion homeostasis		hormone activity			skin(3)|upper_aerodigestive_tract(1)	4		Prostate(55;0.055)|Breast(100;0.116)		Colorectal(74;0.0155)|COAD - Colon adenocarcinoma(73;0.0632)		GTCATACATCCCATCTGTGTC	0.483													18	32					0	0	0.007413	0	0
ADAM7	8756	broad.mit.edu	37	8	24304749	24304749	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:24304749C>T	uc003xeb.2	+	3	320	c.207C>T	c.(205-207)ACC>ACT	p.T69T	ADAM7_uc003xea.1_Silent_p.T69T	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	69	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		ATAGAAAAACCTTAGTCCTTC	0.328													15	25					0	0	0.020292	0	0
EXTL3	2137	broad.mit.edu	37	8	28608236	28608236	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:28608236C>T	uc003xgz.1	+	7	3206	c.2613C>T	c.(2611-2613)TCC>TCT	p.S871S		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	871	Lumenal (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		ATGATGACTCCCACTTCCACG	0.567													29	43					0	0	0.010818	0	0
ANK1	286	broad.mit.edu	37	8	41615578	41615578	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:41615578C>T	uc003xok.2	-	2	189	c.105G>A	c.(103-105)GGG>GGA	p.G35G	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoi.2_Silent_p.G35G|ANK1_uc003xoj.2_Silent_p.G35G|ANK1_uc003xol.2_Silent_p.G35G|ANK1_uc003xom.2_Silent_p.G68G	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	35	89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TAATATCTACCCCATTCCGCA	0.498													88	389					0	0	0.014410	0	0
ST18	9705	broad.mit.edu	37	8	53084745	53084745	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:53084745G>A	uc003xqz.2	-	5	832	c.676C>T	c.(676-678)CAT>TAT	p.H226Y	ST18_uc011ldq.1_5'UTR|ST18_uc011ldr.1_Missense_Mutation_p.H191Y|ST18_uc011lds.1_Missense_Mutation_p.H131Y|ST18_uc003xra.2_Missense_Mutation_p.H226Y|ST18_uc003xrb.2_Missense_Mutation_p.H226Y	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	226						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				TCTTTTTTATGATCTGTTAAA	0.393													22	37					0	0	0.012319	0	0
ATP6V1H	51606	broad.mit.edu	37	8	54669124	54669124	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:54669124C>T	uc003xrl.2	-	12	1420	c.1268G>A	c.(1267-1269)CGA>CAA	p.R423Q	ATP6V1H_uc003xrk.2_Missense_Mutation_p.R383Q|ATP6V1H_uc003xrm.2_Missense_Mutation_p.R423Q|ATP6V1H_uc003xrn.2_Missense_Mutation_p.R405Q|ATP6V1H_uc011ldv.1_Missense_Mutation_p.R343Q|ATP6V1H_uc010lyd.2_Missense_Mutation_p.R359Q	NM_213620	NP_998785	Q9UI12	VATH_HUMAN	ATPase, H+ transporting, lysosomal 50/57kDa, V1	423					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|endocytosis|insulin receptor signaling pathway|interspecies interaction between organisms|regulation of defense response to virus by virus|transferrin transport|vacuolar acidification|viral reproduction	cytosol|plasma membrane|vacuolar proton-transporting V-type ATPase, V1 domain	enzyme regulator activity|protein binding|proton-transporting ATPase activity, rotational mechanism				0		all_epithelial(80;0.0487)|Lung NSC(129;0.109)|all_lung(136;0.181)	OV - Ovarian serous cystadenocarcinoma(7;2.79e-06)|Epithelial(17;0.000629)|all cancers(17;0.00359)			CCGTTTGCCTCGTGGATAATG	0.393													11	19					0	0	0.010729	0	0
RPS20	6224	broad.mit.edu	37	8	56986630	56986630	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:56986630G>A	uc003xsn.2	-	2	290	c.92C>T	c.(91-93)TCC>TTC	p.S31F	RPS20_uc003xsm.2_Missense_Mutation_p.S31F|SNORD54_uc003xso.1_5'Flank|RPS20_uc011lea.1_RNA	NM_001023	NP_001014	P60866	RS20_HUMAN	ribosomal protein S20 isoform 2	31					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	protein binding|RNA binding|structural constituent of ribosome				0		all_lung(136;0.0548)|Lung NSC(129;0.0718)|all_epithelial(80;0.155)	Epithelial(17;0.00117)|all cancers(17;0.00879)			CTTTTCCAAGGATTTTACGTT	0.488													16	84					0	0	0.008361	0	0
SDR16C5	195814	broad.mit.edu	37	8	57224829	57224829	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:57224829C>T	uc003xsy.1	-	3	990	c.352G>A	c.(352-354)GAT>AAT	p.D118N	SDR16C5_uc010lyk.1_Missense_Mutation_p.D118N|SDR16C5_uc010lyl.1_Intron	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	118					detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						ATGGAAACATCGCCGACTTCT	0.368													21	34					0	0	0.014323	0	0
ARFGEF1	10565	broad.mit.edu	37	8	68165716	68165716	+	Missense_Mutation	SNP	G	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:68165716G>T	uc003xxo.1	-	18	3058	c.2668C>A	c.(2668-2670)CTA>ATA	p.L890I	ARFGEF1_uc003xxl.1_Missense_Mutation_p.L344I	NM_006421	NP_006412	Q9Y6D6	BIG1_HUMAN	brefeldin A-inhibited guanine	890					exocytosis|regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity|myosin binding			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|kidney(1)	8	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.0043)|OV - Ovarian serous cystadenocarcinoma(28;0.00578)|all cancers(69;0.0173)|BRCA - Breast invasive adenocarcinoma(89;0.206)			GGGATTGTTAGTTCTTTTGTT	0.318													14	46					2.31682e-05	2.37438e-05	0.003163	1	0
CPA6	57094	broad.mit.edu	37	8	68334778	68334778	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:68334778C>T	uc003xxq.3	-	11	1531	c.1275G>A	c.(1273-1275)GTG>GTA	p.V425V	CPA6_uc003xxr.3_Silent_p.V181V	NM_020361	NP_065094	Q8N4T0	CBPA6_HUMAN	carboxypeptidase A6 isoform 1 precursor	425					proteolysis	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2			Epithelial(68;0.04)|OV - Ovarian serous cystadenocarcinoma(28;0.0593)|all cancers(69;0.136)			TGATATTTTTCACAGCCAGCA	0.458													42	120					0	0	0.013114	0	0
SULF1	23213	broad.mit.edu	37	8	70536400	70536400	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:70536400G>A	uc010lza.1	+	15	2535	c.1818G>A	c.(1816-1818)GTG>GTA	p.V606V	SULF1_uc003xyd.2_Silent_p.V606V|SULF1_uc003xye.2_Silent_p.V606V|SULF1_uc003xyf.2_Silent_p.V606V|SULF1_uc003xyg.2_Silent_p.V606V|SULF1_uc003xyh.1_RNA	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	606					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			GCAACGCCGTGGGCCCACCTA	0.512													15	38					0	0	0.004990	0	0
SULF1	23213	broad.mit.edu	37	8	70541836	70541836	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:70541836G>A	uc010lza.1	+	19	2923	c.2206G>A	c.(2206-2208)GGG>AGG	p.G736R	SULF1_uc003xyd.2_Missense_Mutation_p.G736R|SULF1_uc003xye.2_Missense_Mutation_p.G736R|SULF1_uc003xyf.2_Missense_Mutation_p.G736R|SULF1_uc003xyg.2_Missense_Mutation_p.G736R|SULF1_uc003xyh.1_RNA|SULF1_uc003xyi.1_5'UTR	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	736					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			GCAGAGGAAGGGGGAAGAGTG	0.537													28	87					0	0	0.008361	0	0
SULF1	23213	broad.mit.edu	37	8	70550829	70550829	+	Missense_Mutation	SNP	T	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:70550829T>G	uc010lza.1	+	20	3094	c.2377T>G	c.(2377-2379)TTT>GTT	p.F793V	SULF1_uc003xyd.2_Missense_Mutation_p.F793V|SULF1_uc003xye.2_Missense_Mutation_p.F793V|SULF1_uc003xyf.2_Missense_Mutation_p.F793V|SULF1_uc003xyg.2_Missense_Mutation_p.F793V|SULF1_uc003xyh.1_RNA|SULF1_uc003xyi.1_Intron|SULF1_uc003xyj.1_5'UTR	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	793					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			TTTCTGTGAGTTTGCTACTGG	0.363													33	82					0	0	0.013726	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70591849	70591849	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:70591849C>T	uc003xyl.2	-	8	2495	c.1788G>A	c.(1786-1788)CGG>CGA	p.R596R	SLCO5A1_uc010lzb.2_Silent_p.R541R|SLCO5A1_uc011lfa.1_RNA|SLCO5A1_uc003xyk.2_Silent_p.R596R	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	596	Extracellular (Potential).|Kazal-like.					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			CTGTATAATTCCGTATCTAAG	0.413													38	129					0	0	0.008740	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70667763	70667763	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:70667763G>A	uc003xyl.2	-	4	1861	c.1154C>T	c.(1153-1155)TCT>TTT	p.S385F	SLCO5A1_uc010lzb.2_Missense_Mutation_p.S385F|SLCO5A1_uc011lfa.1_Intron|SLCO5A1_uc003xyk.2_Missense_Mutation_p.S385F|SLCO5A1_uc010lzc.2_Missense_Mutation_p.S385F	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	385	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			AGCATCAACAGAAAATTTTTT	0.373													19	37					0	0	0.007413	0	0
NCOA2	10499	broad.mit.edu	37	8	71069449	71069449	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:71069449G>A	uc003xyn.1	-	11	1313	c.1151C>T	c.(1150-1152)CCG>CTG	p.P384L		NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	384					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			AGTCAGATCCGGATTCATCAC	0.413			T	RUNXBP2	AML								14	39					0	0	0.004990	0	0
EYA1	2138	broad.mit.edu	37	8	72123484	72123484	+	Missense_Mutation	SNP	T	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:72123484T>A	uc003xys.3	-	16	1892	c.1605A>T	c.(1603-1605)GAA>GAT	p.E535D	EYA1_uc003xyr.3_Missense_Mutation_p.E500D|EYA1_uc003xyt.3_Missense_Mutation_p.E502D|EYA1_uc010lzf.2_Missense_Mutation_p.E462D|EYA1_uc003xyu.2_Missense_Mutation_p.E535D|EYA1_uc011lfe.1_Missense_Mutation_p.E529D|EYA1_uc003xyv.2_Missense_Mutation_p.E413D	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	535					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			CAAAACAGCTTTCTTTTCCTA	0.333													9	26					0	0	0.006214	0	0
KCNB2	9312	broad.mit.edu	37	8	73848248	73848248	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:73848248G>A	uc003xzb.2	+	3	1246	c.658G>A	c.(658-660)GAA>AAA	p.E220K		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	220					regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			GGAGCTGCAGGAAACGGACGA	0.473													13	172					0	0	0.013537	0	0
LY96	23643	broad.mit.edu	37	8	74941192	74941192	+	Missense_Mutation	SNP	G	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:74941192G>T	uc003yad.2	+	5	477	c.386G>T	c.(385-387)GGA>GTA	p.G129V		NM_015364	NP_056179	Q9Y6Y9	LY96_HUMAN	MD-2 protein precursor	129					cellular defense response|detection of lipopolysaccharide|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	extracellular space|lipopolysaccharide receptor complex|plasma membrane	coreceptor activity|lipopolysaccharide receptor activity|protein binding				0	Breast(64;0.0311)		Epithelial(68;0.0208)|BRCA - Breast invasive adenocarcinoma(89;0.0499)|all cancers(69;0.0619)			TCATTTTAGGGAAAATACAAA	0.333													15	27					2.31682e-05	2.37438e-05	0.003163	1	0
ZFHX4	79776	broad.mit.edu	37	8	77617118	77617118	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:77617118C>T	uc003yav.2	+	2	1182	c.795C>T	c.(793-795)TTC>TTT	p.F265F	ZFHX4_uc003yat.1_Silent_p.F265F|ZFHX4_uc003yau.1_Silent_p.F265F|ZFHX4_uc003yaw.1_Silent_p.F265F	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	265						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TGTCCAAATTCGATGGTTGTG	0.423										HNSCC(33;0.089)			36	52					0	0	0.013726	0	0
STMN2	11075	broad.mit.edu	37	8	80553665	80553665	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:80553665G>A	uc003ybj.2	+	3	219	c.168G>A	c.(166-168)CTG>CTA	p.L56L	STMN2_uc010lzp.2_RNA|STMN2_uc011lfn.1_Silent_p.L56L	NM_007029	NP_008960	Q93045	STMN2_HUMAN	superiorcervical ganglia, neural specific 10	56	Regulatory/phosphorylation domain (Potential).				intracellular signal transduction|negative regulation of microtubule depolymerization|negative regulation of microtubule polymerization|negative regulation of neuron projection development|neuron differentiation|positive regulation of microtubule depolymerization|positive regulation of neuron projection development	axon|growth cone|membrane|membrane fraction|perinuclear region of cytoplasm|soluble fraction	protein binding			ovary(1)|central_nervous_system(1)	2	all_lung(9;8.34e-05)		Epithelial(68;0.0229)|all cancers(69;0.0874)			CTTTTGAGCTGATCTTGAAGC	0.453													15	53					0	0	0.003163	0	0
FABP9	646480	broad.mit.edu	37	8	82371483	82371483	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:82371483C>T	uc011lfo.1	-	2	163	c.163G>A	c.(163-165)GAA>AAA	p.E55K		NM_001080526	NP_001073995	Q0Z7S8	FABP9_HUMAN	fatty acid binding protein 9, testis	55							lipid binding|transporter activity				0			Epithelial(68;0.186)			AAAGAACTTTCTGTTCTTATG	0.428													15	29					0	0	0.004007	0	0
GEM	2669	broad.mit.edu	37	8	95264409	95264409	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:95264409C>T	uc003ygj.2	-	4	700	c.451G>A	c.(451-453)GAC>AAC	p.D151N	GEM_uc003ygi.2_Missense_Mutation_p.D151N	NM_005261	NP_005252	P55040	GEM_HUMAN	GTP-binding mitogen-induced T-cell protein	151					cell surface receptor linked signaling pathway|immune response|small GTPase mediated signal transduction	internal side of plasma membrane	calmodulin binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding			lung(1)	1	Breast(36;4.65e-06)	Myeloproliferative disorder(644;0.204)	BRCA - Breast invasive adenocarcinoma(8;0.00691)			AGGTATGCGTCCCCGACCTGC	0.522													28	42					0	0	0.008361	0	0
VPS13B	157680	broad.mit.edu	37	8	100887878	100887879	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:100887878_100887879GG>AA	uc003yiv.2	+	62	12164_12165	c.12053_12054GG>AA	c.(12052-12054)AGG>AAA	p.R4018K	VPS13B_uc003yiw.2_Missense_Mutation_p.R3993K	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	4018					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			AAAGCCCTGAGGAAAGGGTTTC	0.337													13	53					0	0	0.004672	0	0
ZFPM2	23414	broad.mit.edu	37	8	106814685	106814685	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:106814685C>T	uc003ymd.2	+	8	2398	c.2375C>T	c.(2374-2376)CCA>CTA	p.P792L	ZFPM2_uc011lhs.1_Missense_Mutation_p.P523L	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	792					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			GATATCTTTCCAGGAATTGTC	0.438													9	9					0	0	0.006214	0	0
FER1L6	654463	broad.mit.edu	37	8	124978497	124978497	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:124978497G>A	uc003yqw.2	+	5	557	c.351G>A	c.(349-351)GTG>GTA	p.V117V		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	117	C2 1.|Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AAAGCACAGTGAAGGAAGGAA	0.478													23	35					0	0	0.021523	0	0
FER1L6	654463	broad.mit.edu	37	8	124989720	124989720	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:124989720G>A	uc003yqw.2	+	10	1140	c.934G>A	c.(934-936)GAA>AAA	p.E312K		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	312	C2 2.|Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			GATCTTCAAGGAAATGTTCCC	0.507													46	73					0	0	0.014410	0	0
FER1L6	654463	broad.mit.edu	37	8	125131862	125131862	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:125131862C>T	uc003yqw.2	+	41	5611	c.5405C>T	c.(5404-5406)TCC>TTC	p.S1802F	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1802	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			CCAGACACCTCCTTTTCGTGG	0.403													10	65					0	0	0.010729	0	0
ADCY8	114	broad.mit.edu	37	8	131964190	131964190	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:131964190C>T	uc003ytd.3	-	3	1421	c.1165G>A	c.(1165-1167)GAC>AAC	p.D389N	ADCY8_uc010mds.2_Missense_Mutation_p.D389N	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	389	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TTGGTCATGTCGTTGATCATT	0.532										HNSCC(32;0.087)			31	55					0	0	0.008361	0	0
ZFAT	57623	broad.mit.edu	37	8	135614003	135614003	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:135614003G>A	uc003yup.2	-	6	2134	c.1959C>T	c.(1957-1959)CCC>CCT	p.P653P	ZFAT_uc003yun.2_Silent_p.P641P|ZFAT_uc003yuo.2_Silent_p.P641P|ZFAT_uc010meh.2_Silent_p.P641P|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Silent_p.P641P|ZFAT_uc010mej.2_Silent_p.P591P|ZFAT_uc003yur.2_Silent_p.P641P	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	653					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			CTTCCCCTAGGGGGCTCTGGG	0.592													47	62					0	0	0.014410	0	0
FAM135B	51059	broad.mit.edu	37	8	139165019	139165019	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:139165019C>T	uc003yuy.2	-	13	1870	c.1699G>A	c.(1699-1701)GAA>AAA	p.E567K	FAM135B_uc003yux.2_Missense_Mutation_p.E468K|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.E129K|FAM135B_uc003yvb.2_Missense_Mutation_p.E129K	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	567										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			ACCAGGGGTTCAGCTCTGGAG	0.498										HNSCC(54;0.14)			24	90					0	0	0.016522	0	0
GML	2765	broad.mit.edu	37	8	143928000	143928000	+	Missense_Mutation	SNP	C	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:143928000C>A	uc003yxg.2	+	4	461	c.371C>A	c.(370-372)CCC>CAC	p.P124H		NM_002066	NP_002057	Q99445	GML_HUMAN	glycosylphosphatidylinositol anchored molecule	124	UPAR/Ly6.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|negative regulation of cell proliferation	anchored to membrane|extrinsic to membrane|plasma membrane		p.P124P(1)		central_nervous_system(2)	2	all_cancers(97;4.26e-11)|all_epithelial(106;1.85e-08)|Lung NSC(106;0.000274)|all_lung(105;0.000755)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					GACATGTTACCCGATGAAGTA	0.418													14	74					1.3612e-06	1.40374e-06	0.003163	1	0
TSTA3	7264	broad.mit.edu	37	8	144695729	144695729	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:144695729C>T	uc003yza.2	-	9	811	c.775G>A	c.(775-777)GTG>ATG	p.V259M	TSTA3_uc003yzb.2_Missense_Mutation_p.V259M	NM_003313	NP_003304	Q13630	FCL_HUMAN	tissue specific transplantation antigen P35B	259					'de novo' GDP-L-fucose biosynthetic process|leukocyte cell-cell adhesion		coenzyme binding|electron carrier activity|GDP-4-dehydro-D-rhamnose reductase activity|GDP-L-fucose synthase activity|isomerase activity			pancreas(1)	1	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.17e-38)|Epithelial(56;7.17e-37)|all cancers(56;2.46e-32)|Colorectal(110;0.134)|BRCA - Breast invasive adenocarcinoma(115;0.239)		NADH(DB00157)	GCCTCCACCACCGCCTCGGCT	0.682													7	24					0	0	0.003080	0	0
ARHGAP39	80728	broad.mit.edu	37	8	145773559	145773559	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr8:145773559G>A	uc003zdt.1	-	6	1466	c.911C>T	c.(910-912)CCG>CTG	p.P304L	ARHGAP39_uc011llk.1_Missense_Mutation_p.P304L|ARHGAP39_uc003zds.1_Missense_Mutation_p.P304L	NM_025251	NP_079527	Q9C0H5	RHG39_HUMAN	KIAA1688 protein	304	Pro-rich.				axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|nucleus	GTPase activator activity				0						GCCATAGCGCGGGGAGGAGGG	0.687													24	35					0	0	0.005443	0	0
KIAA2026	158358	broad.mit.edu	37	9	5922502	5922502	+	Missense_Mutation	SNP	G	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:5922502G>T	uc003zjq.3	-	8	3710	c.3494C>A	c.(3493-3495)CCA>CAA	p.P1165Q	KIAA2026_uc010mht.2_Missense_Mutation_p.P340Q	NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	1165										ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		AGCTGTATTTGGTAGTTGGGT	0.353													17	35					1.02788e-11	1.07088e-11	0.004990	1	0
FAM154A	158297	broad.mit.edu	37	9	18928076	18928076	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:18928076G>A	uc003zni.1	-	4	1677	c.1399C>T	c.(1399-1401)CAG>TAG	p.Q467*	FAM154A_uc010mip.1_Nonsense_Mutation_p.Q275*	NM_153707	NP_714918	Q8IYX7	F154A_HUMAN	hypothetical protein LOC158297	467										pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.53e-16)		AACTCCCTCTGGTTGGGGTTT	0.403													37	107					0	0	0.007835	0	0
SMU1	55234	broad.mit.edu	37	9	33056197	33056197	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:33056197G>A	uc003zsf.1	-	9	1144	c.1036C>T	c.(1036-1038)CGT>TGT	p.R346C	SMU1_uc010mjo.1_Missense_Mutation_p.R346C|SMU1_uc010mjp.1_Missense_Mutation_p.R346C|SMU1_uc011lnu.1_Missense_Mutation_p.R185C	NM_018225	NP_060695	Q2TAY7	SMU1_HUMAN	smu-1 suppressor of mec-8 and unc-52 homolog	346	WD 3.					cytoplasm|nucleus				ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.0227)	GBM - Glioblastoma multiforme(74;0.11)		GAATGGCCACGAAATTCCTTC	0.338													10	20					0	0	0.008291	0	0
PRSS3	5646	broad.mit.edu	37	9	33798555	33798555	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:33798555C>T	uc003ztj.3	+	4	697	c.697C>T	c.(697-699)CCT>TCT	p.P233S	uc003ztk.1_RNA|PRSS3_uc003zti.3_Missense_Mutation_p.P190S|PRSS3_uc003ztl.3_Missense_Mutation_p.P176S	NM_007343	NP_031369	P35030	TRY3_HUMAN	mesotrypsin isoform 1 preproprotein	233	Peptidase S1.				digestion|endothelial cell migration|zymogen activation	extracellular space	calcium ion binding|protein binding|serine-type endopeptidase activity|serine-type peptidase activity				0			LUSC - Lung squamous cell carcinoma(29;0.0176)			AGCCTCCTACCCTGGAAAGAT	0.542													36	138					0	0	0.015359	0	0
DNAI1	27019	broad.mit.edu	37	9	34506686	34506686	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:34506686C>T	uc003zum.2	+	13	1318	c.1125C>T	c.(1123-1125)TTC>TTT	p.F375F		NM_012144	NP_036276	Q9UI46	DNAI1_HUMAN	dynein, axonemal, intermediate chain 1	375					cell projection organization	cilium axoneme|cytoplasm|dynein complex|microtubule	motor activity				0	all_epithelial(49;0.244)		LUSC - Lung squamous cell carcinoma(29;0.0107)|STAD - Stomach adenocarcinoma(86;0.212)	GBM - Glioblastoma multiforme(74;0.0222)		ACCCCAGCTTCCCTGAGTACA	0.587									Kartagener_syndrome				16	41					0	0	0.006122	0	0
UNC13B	10497	broad.mit.edu	37	9	35310610	35310610	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:35310610C>T	uc003zwq.2	+	9	1200	c.908C>T	c.(907-909)TCC>TTC	p.S303F	UNC13B_uc010mkl.1_Missense_Mutation_p.S303F|UNC13B_uc003zwr.2_Missense_Mutation_p.S303F	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	303					excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			CACAGCCTGTCCAGAGATGGC	0.507													12	45					0	0	0.016723	0	0
UNC13B	10497	broad.mit.edu	37	9	35376085	35376085	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:35376085C>T	uc003zwq.2	+	14	1721	c.1429C>T	c.(1429-1431)CCT>TCT	p.P477S	UNC13B_uc003zwr.2_Missense_Mutation_p.P477S	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	477	Phorbol-ester/DAG-type.				excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			GTGCACCACTCCTCATAACTT	0.507													45	90					0	0	0.014410	0	0
TLN1	7094	broad.mit.edu	37	9	35700339	35700339	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:35700339G>A	uc003zxt.2	-	49	6863	c.6509C>T	c.(6508-6510)TCT>TTT	p.S2170F		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	2170					axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TTCTGGGGTAGAGGTCTTGGC	0.527													15	72					0	0	0.004007	0	0
OR13J1	392309	broad.mit.edu	37	9	35869662	35869662	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:35869662G>A	uc011lph.1	-	1	737	c.737C>T	c.(736-738)GCT>GTT	p.A246V		NM_001004487	NP_001004487	Q8NGT2	O13J1_HUMAN	olfactory receptor, family 13, subfamily J,	246	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_epithelial(49;0.169)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00494)|STAD - Stomach adenocarcinoma(86;0.194)			CAGCACTACAGCCAGGTGTGC	0.552													12	37					0	0	0.010729	0	0
Unknown	0	broad.mit.edu	37	9	43737504	43737504	+	RNA	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:43737504G>A	uc004acz.1	+	3		c.606G>A								Homo sapiens cDNA FLJ30083 fis, clone BGGI12001097, weakly similar to Homo sapiens contactin associated protein (Caspr) mRNA.																		CAGTATCGCCGAGAAGAAAGC	0.418													26	52					0	0	0.019004	0	0
LOC442421	442421	broad.mit.edu	37	9	66499716	66499716	+	Missense_Mutation	SNP	A	G	G	rs141617852	by1000genomes	TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:66499716A>G	uc004aee.1	+	1	526	c.526A>G	c.(526-528)AAT>GAT	p.N176D	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						CCTGGAGCCCAATCTGCTGGA	0.607													8	69					0	0	0.008291	0	0
TRPM3	80036	broad.mit.edu	37	9	73151069	73151069	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:73151069C>T	uc004aid.2	-	25	5168	c.4924G>A	c.(4924-4926)GAG>AAG	p.E1642K	TRPM3_uc004ahu.2_Missense_Mutation_p.E1484K|TRPM3_uc004ahv.2_Missense_Mutation_p.E1444K|TRPM3_uc004ahw.2_Missense_Mutation_p.E1514K|TRPM3_uc004ahx.2_Missense_Mutation_p.E1501K|TRPM3_uc004ahy.2_Missense_Mutation_p.E1504K|TRPM3_uc004ahz.2_Missense_Mutation_p.E1491K|TRPM3_uc004aia.2_Missense_Mutation_p.E1489K|TRPM3_uc004aib.2_Missense_Mutation_p.E1479K|TRPM3_uc004aic.2_Intron	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	1667	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						GCACTTGGCTCCTCTGCCGAG	0.537													122	327					0	0	0.014410	0	0
PRUNE2	158471	broad.mit.edu	37	9	79323993	79323993	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:79323993G>A	uc010mpk.2	-	8	3321	c.3197C>T	c.(3196-3198)TCC>TTC	p.S1066F		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1066					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						ATCCTCCATGGAGATATTCTT	0.453													22	64					0	0	0.014323	0	0
VPS13A	23230	broad.mit.edu	37	9	79824434	79824434	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:79824434C>T	uc004akr.2	+	6	741	c.481C>T	c.(481-483)CGT>TGT	p.R161C	VPS13A_uc004akp.3_Missense_Mutation_p.R161C|VPS13A_uc004akq.3_Missense_Mutation_p.R161C|VPS13A_uc004aks.2_Missense_Mutation_p.R161C	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	161			R -> H (in a colorectal cancer sample; somatic mutation).		Golgi to endosome transport|protein transport	intracellular	protein binding	p.R161H(1)		pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						TATCCATATTCGTTATGAAGA	0.274													5	6					0	0	0.014758	0	0
AGTPBP1	23287	broad.mit.edu	37	9	88211343	88211343	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:88211343G>A	uc011ltd.1	-	17	2390	c.2357C>T	c.(2356-2358)TCG>TTG	p.S786L	AGTPBP1_uc004aod.3_Missense_Mutation_p.S412L|AGTPBP1_uc011ltc.1_Intron|AGTPBP1_uc010mqc.2_Missense_Mutation_p.S746L|AGTPBP1_uc011lte.1_Missense_Mutation_p.S798L	NM_015239	NP_056054	Q9UPW5	CBPC1_HUMAN	ATP/GTP binding protein 1	786					C-terminal protein deglutamylation|cerebellar Purkinje cell differentiation|eye photoreceptor cell differentiation|mitochondrion organization|neuromuscular process|olfactory bulb development|protein side chain deglutamylation|proteolysis	cytosol|mitochondrion|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(4)|large_intestine(2)|skin(1)	7						TTCCTGAACCGAATACATGAG	0.303													6	26					0	0	0.004482	0	0
CTSL3	392360	broad.mit.edu	37	9	90401769	90401769	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:90401769G>A	uc004apm.1	+	5	627	c.621G>A	c.(619-621)AGG>AGA	p.R207R		NR_027917				RecName: Full=Putative cathepsin L-like protein 3;          Short=Cathepsin L-like protein; AltName: Full=HCTSL-s;											ovary(1)	1						ATGACATGAGGAATCATCTGG	0.493													8	24					0	0	0.006214	0	0
ROR2	4920	broad.mit.edu	37	9	94486585	94486585	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:94486585C>T	uc004arj.1	-	9	2390	c.2191G>A	c.(2191-2193)GAG>AAG	p.E731K	ROR2_uc004ari.1_Missense_Mutation_p.E591K	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	731	Cytoplasmic (Potential).|Protein kinase.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						CTGGGGAACTCGTTCCAGCAC	0.647													23	67					0	0	0.014323	0	0
ROR2	4920	broad.mit.edu	37	9	94538090	94538090	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:94538090C>T	uc004arj.1	-	2	307	c.108G>A	c.(106-108)GAG>GAA	p.E36E	ROR2_uc004ari.1_5'UTR|ROR2_uc004ark.2_Silent_p.E36E	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	36	Extracellular (Potential).				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						GATCCAGAACCTCCACTTCAC	0.483											OREG0019308	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	27					0	0	0.001984	0	0
NOL8	55035	broad.mit.edu	37	9	95077282	95077282	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:95077282G>A	uc004arv.2	-	7	1962	c.1625C>T	c.(1624-1626)GCG>GTG	p.A542V	NOL8_uc010mqw.2_RNA|NOL8_uc004arw.2_Intron|NOL8_uc011ltw.1_Missense_Mutation_p.A474V	NM_017948	NP_060418	Q76FK4	NOL8_HUMAN	nucleolar protein 8	542					DNA replication|positive regulation of cell growth	nucleolus	nucleotide binding|protein binding|RNA binding			ovary(1)	1						CACAATCTCCGCAGGACGAAT	0.507													6	38					0	0	0.003080	0	0
HSD17B3	3293	broad.mit.edu	37	9	99013747	99013747	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:99013747G>A	uc004awa.1	-	5	454	c.406C>T	c.(406-408)CCA>TCA	p.P136S	HSD17B3_uc010msc.1_Missense_Mutation_p.P136S	NM_000197	NP_000188	P37058	DHB3_HUMAN	estradiol 17 beta-dehydrogenase 3	136					androgen biosynthetic process|male genitalia development	endoplasmic reticulum membrane|microsome	binding|testosterone 17-beta-dehydrogenase (NAD+) activity|testosterone 17-beta-dehydrogenase (NADP+) activity				0		Acute lymphoblastic leukemia(62;0.0171)|all_hematologic(171;0.214)			NADH(DB00157)	AGAAGGTTTGGAAGCATTCCG	0.423													7	40					0	0	0.003080	0	0
COL15A1	1306	broad.mit.edu	37	9	101806866	101806866	+	Missense_Mutation	SNP	C	T	T	rs140219439		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:101806866C>T	uc004azb.1	+	25	2797	c.2591C>T	c.(2590-2592)CCG>CTG	p.P864L		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	864	Triple-helical region 4 (COL4).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				AAGGGAGAGCCGGGTGCCATC	0.522													13	58					0	0	0.004007	0	0
COL15A1	1306	broad.mit.edu	37	9	101806876	101806876	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:101806876C>T	uc004azb.1	+	25	2807	c.2601C>T	c.(2599-2601)ATC>ATT	p.I867I		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	867	Triple-helical region 4 (COL4).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				CGGGTGCCATCCTGACAGAGG	0.502													14	61					0	0	0.003163	0	0
LPAR1	1902	broad.mit.edu	37	9	113704152	113704153	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:113704152_113704153CC>TT	uc004bfa.2	-	4	596_597	c.341_342GG>AA	c.(340-342)CGG>CAA	p.R114Q	LPAR1_uc011lwm.1_Missense_Mutation_p.R115Q|LPAR1_uc004bfb.2_Missense_Mutation_p.R114Q|LPAR1_uc004bfc.2_Missense_Mutation_p.R114Q|LPAR1_uc011lwn.1_Missense_Mutation_p.R96Q|LPAR1_uc011lwo.1_Missense_Mutation_p.R115Q|LPAR1_uc010mub.2_Missense_Mutation_p.R114Q	NM_057159	NP_476500	Q92633	LPAR1_HUMAN	lysophosphatidic acid receptor 1	114	Extracellular (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	cell surface|integral to plasma membrane				ovary(2)	2						CAGTCAGTCTCCGAGTATTGGG	0.49													22	83					0	0	0.004672	0	0
C9orf84	158401	broad.mit.edu	37	9	114518604	114518604	+	Splice_Site	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:114518604C>T	uc004bfr.2	-	6	805	c.670_splice	c.e6+1	p.D224_splice	C9orf84_uc011lwt.1_Splice_Site|C9orf84_uc004bfs.1_Splice_Site_p.D288_splice|C9orf84_uc004bfq.2_Splice_Site_p.D185_splice|C9orf84_uc010mug.2_Splice_Site_p.D170_splice	NM_173521	NP_775792	Q5VXU9	CI084_HUMAN	hypothetical protein LOC158401 isoform 1											ovary(2)	2						TTAATTCTCACCTCTTTCAAA	0.294													6	24					0	0	0.001168	0	0
AKNA	80709	broad.mit.edu	37	9	117108288	117108288	+	Silent	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:117108288A>G	uc004biq.3	-	17	3651	c.3516T>C	c.(3514-3516)AGT>AGC	p.S1172S	AKNA_uc004bin.3_Silent_p.S419S|AKNA_uc004bio.3_Silent_p.S632S|AKNA_uc004bip.3_Silent_p.S1091S|AKNA_uc004bir.3_Silent_p.S1172S|AKNA_uc004bis.3_Silent_p.S1172S|AKNA_uc010mve.2_Silent_p.S1053S	NM_030767	NP_110394	Q7Z591	AKNA_HUMAN	AT-hook transcription factor	1172					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(2)	6						CAGATTCTGAACCTGGGGTAG	0.572													8	19					0	0	0.004482	0	0
TNC	3371	broad.mit.edu	37	9	117800600	117800600	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:117800600T>C	uc004bjj.3	-	20	5814	c.5452A>G	c.(5452-5454)AGG>GGG	p.R1818G	TNC_uc010mvf.2_Missense_Mutation_p.R1545G	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1818	Fibronectin type-III 14.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						GGCTGCCACCTGGCCAAGGCT	0.532													13	47					0	0	0.020292	0	0
DBC1	1620	broad.mit.edu	37	9	121929907	121929907	+	Nonsense_Mutation	SNP	C	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:121929907C>A	uc004bkc.2	-	8	2197	c.1741G>T	c.(1741-1743)GAA>TAA	p.E581*		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	581					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						TAGCCAAATTCCCCGAAGGGC	0.537													25	76					4.87955e-14	5.09171e-14	0.005443	1	0
MEGF9	1955	broad.mit.edu	37	9	123367702	123367702	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:123367702C>T	uc004bkj.1	-	8	1686	c.1686G>A	c.(1684-1686)GTG>GTA	p.V562V	MEGF9_uc011lyb.1_Silent_p.V517V	NM_001080497	NP_001073966	Q9H1U4	MEGF9_HUMAN	multiple EGF-like-domains 9	525	Helical; (Potential).					integral to membrane	calcium ion binding				0						TTAGCAGCACCACAACAATGA	0.428													22	59					0	0	0.014323	0	0
OR1N2	138882	broad.mit.edu	37	9	125316346	125316346	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:125316346C>T	uc011lyx.1	+	1	898	c.898C>T	c.(898-900)CCC>TCC	p.P300S		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	300	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						GGTGATTATTCCCACGCTAAA	0.398													12	35					0	0	0.016723	0	0
OR1Q1	158131	broad.mit.edu	37	9	125377550	125377550	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:125377550C>T	uc011lyy.1	+	1	534	c.534C>T	c.(532-534)TTC>TTT	p.F178F		NM_012364	NP_036496	Q15612	OR1Q1_HUMAN	olfactory receptor, family 1, subfamily Q,	178	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CCCACTTCTTCTGTGACCTCT	0.493													20	40					0	0	0.014323	0	0
FPGS	2356	broad.mit.edu	37	9	130569923	130569923	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:130569923G>A	uc004bsg.1	+	8	750	c.700G>A	c.(700-702)GAT>AAT	p.D234N	FPGS_uc004bsh.1_Missense_Mutation_p.D51N|FPGS_uc011mal.1_Missense_Mutation_p.D208N|FPGS_uc004bsi.1_Missense_Mutation_p.D184N	NM_004957	NP_004948	Q05932	FOLC_HUMAN	folylpolyglutamate synthase isoform a precursor	234					folic acid metabolic process|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|one-carbon metabolic process	cytosol|mitochondrial matrix	ATP binding|tetrahydrofolylpolyglutamate synthase activity				0					L-Glutamic Acid(DB00142)	CCTCCTGGGGGATACGGTGGA	0.458													7	42					0	0	0.003080	0	0
COQ4	51117	broad.mit.edu	37	9	131088142	131088142	+	Silent	SNP	C	T	T	rs111535641		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:131088142C>T	uc004bur.3	+	4	731	c.384C>T	c.(382-384)CTC>CTT	p.L128L	COQ4_uc011max.1_Silent_p.L128L|COQ4_uc004bus.2_Silent_p.L104L|COQ4_uc010mxy.2_Silent_p.L104L	NM_016035	NP_057119	Q9Y3A0	COQ4_HUMAN	coenzyme Q4 homolog precursor	128					ubiquinone biosynthetic process	mitochondrial inner membrane					0						GCGAGTATCTCCGTTTCCTGG	0.572													9	33					0	0	0.006214	0	0
CERCAM	51148	broad.mit.edu	37	9	131196510	131196510	+	Splice_Site	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:131196510T>C	uc004buz.3	+	10	1729	c.1331_splice	c.e10+2	p.I444_splice	CERCAM_uc004buy.1_Splice_Site_p.I366_splice|CERCAM_uc010mxz.2_Splice_Site_p.I366_splice|CERCAM_uc010mya.1_Splice_Site_p.I285_splice	NM_016174	NP_057258	Q5T4B2	GT253_HUMAN	cerebral endothelial cell adhesion molecule 1						cellular component movement|leukocyte cell-cell adhesion|lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen|plasma membrane				pancreas(1)	1						GGACCTGATGTAGGCAGCCTG	0.637													12	37					0	0	0.016723	0	0
CCBL1	883	broad.mit.edu	37	9	131600580	131600580	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:131600580G>A	uc004bwh.2	-	4	453	c.268C>T	c.(268-270)CCG>TCG	p.P90S	CCBL1_uc004bwf.2_Missense_Mutation_p.P124S|CCBL1_uc004bwg.2_Intron|CCBL1_uc010myn.2_Missense_Mutation_p.P90S|CCBL1_uc004bwj.2_Intron|CCBL1_uc011mbl.1_Missense_Mutation_p.P184S|CCBL1_uc004bwi.2_RNA|CCBL1_uc010myo.2_Missense_Mutation_p.P90S	NM_004059	NP_004050	Q16773	KAT1_HUMAN	kynurenine aminotransferase I isoform a	90					kynurenine metabolic process|L-phenylalanine catabolic process|tryptophan catabolic process	cytosol|nucleus	1-aminocyclopropane-1-carboxylate synthase activity|cysteine-S-conjugate beta-lyase activity|glutamine-phenylpyruvate transaminase activity|kynurenine-oxoglutarate transaminase activity|L-glutamine:pyruvate aminotransferase activity|L-phenylalanine:pyruvate aminotransferase activity|protein homodimerization activity|pyridoxal phosphate binding			ovary(1)	1					L-Glutamine(DB00130)|Pyridoxal Phosphate(DB00114)	TTCCTGAGCGGGTCTATCTCC	0.582													12	35					0	0	0.013537	0	0
FAM73B	84895	broad.mit.edu	37	9	131830145	131830145	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:131830145C>T	uc004bxa.2	+	12	1450	c.1264C>T	c.(1264-1266)CGA>TGA	p.R422*	FAM73B_uc004bwy.2_RNA|FAM73B_uc004bwz.2_RNA|FAM73B_uc011mbn.1_Nonsense_Mutation_p.R422*|FAM73B_uc004bxb.2_5'Flank	NM_032809	NP_116198	Q7L4E1	FA73B_HUMAN	hypothetical protein LOC84895	422						integral to membrane				skin(1)	1						GCTGGAGGGCCGAGGGGTGAG	0.632													6	11					0	0	0.003080	0	0
USP20	10868	broad.mit.edu	37	9	132641892	132641892	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:132641892C>T	uc004bys.2	+	24	2764	c.2553C>T	c.(2551-2553)GTC>GTT	p.V851V	USP20_uc004byr.2_Silent_p.V851V|USP20_uc004byt.1_Silent_p.V851V|USP20_uc004byu.1_Silent_p.V37V	NM_001110303	NP_001103773	Q9Y2K6	UBP20_HUMAN	ubiquitin specific protease 20	851	DUSP 2.				endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|ubiquitin thiolesterase activity|zinc ion binding			lung(1)|breast(1)	2		Ovarian(14;0.00556)				TTGCACAGGTCAAAGGAAGCG	0.657													24	55					0	0	0.005443	0	0
ADAMTS13	11093	broad.mit.edu	37	9	136302870	136302870	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:136302870G>A	uc004cdv.3	+	13	1881	c.1437G>A	c.(1435-1437)GGG>GGA	p.G479G	ADAMTS13_uc004cdp.3_Intron|ADAMTS13_uc004cdt.1_Silent_p.G479G|ADAMTS13_uc004cdu.1_Silent_p.G448G|ADAMTS13_uc004cdw.3_Silent_p.G479G|ADAMTS13_uc004cdx.3_Silent_p.G448G|ADAMTS13_uc004cdy.1_RNA|ADAMTS13_uc004cdz.3_Silent_p.G149G|ADAMTS13_uc004cds.1_Intron|ADAMTS13_uc004cdr.1_RNA	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	479					cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		CCCTCCCAGGGGATGCTCTGT	0.607													7	43					0	0	0.003080	0	0
DBH	1621	broad.mit.edu	37	9	136501608	136501609	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:136501608_136501609GG>AA	uc004cel.2	+	1	124_125	c.115_116GG>AA	c.(115-117)GGC>AAC	p.G39N		NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	39	Intragranular (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	CGCACTGCAGGGCTCGGCTCCC	0.668													12	55					0	0	0.004672	0	0
COL5A1	1289	broad.mit.edu	37	9	137593132	137593132	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:137593132G>A	uc004cfe.2	+	4	989	c.607G>A	c.(607-609)GGC>AGC	p.G203S		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	203	TSP N-terminal.|Laminin G-like.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CGACATCAATGGCATCATCGT	0.552													11	29					0	0	0.013537	0	0
OBP2A	29991	broad.mit.edu	37	9	138438731	138438731	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:138438731G>A	uc004cgb.2	+	2	222	c.180G>A	c.(178-180)GGG>GGA	p.G60G	OBP2A_uc004cgc.2_Silent_p.G60G|OBP2A_uc010nau.2_RNA|OBP2A_uc010nav.2_Intron	NM_014582	NP_055397	Q9NY56	OBP2A_HUMAN	odorant binding protein 2A precursor	60					response to stimulus|sensory perception of smell	extracellular region	odorant binding|transporter activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.39e-07)|Epithelial(140;1.11e-06)|all cancers(34;2.04e-05)		TGGGCGGTGGGAACTTGGAAG	0.632													10	31					0	0	0.008291	0	0
OBP2A	29991	broad.mit.edu	37	9	138439043	138439043	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:138439043C>T	uc004cgb.2	+	3	268	c.226C>T	c.(226-228)CAG>TAG	p.Q76*	OBP2A_uc004cgc.2_Nonsense_Mutation_p.Q76*|OBP2A_uc010nau.2_RNA|OBP2A_uc010nav.2_Missense_Mutation_p.P31L	NM_014582	NP_055397	Q9NY56	OBP2A_HUMAN	odorant binding protein 2A precursor	76					response to stimulus|sensory perception of smell	extracellular region	odorant binding|transporter activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.39e-07)|Epithelial(140;1.11e-06)|all cancers(34;2.04e-05)		TCGGTGCATCCAGAAGAAAAT	0.637													13	57					0	0	0.020292	0	0
CARD9	64170	broad.mit.edu	37	9	139265382	139265382	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:139265382C>T	uc004chg.3	-	4	704	c.538G>A	c.(538-540)GAG>AAG	p.E180K	CARD9_uc011mdw.1_Missense_Mutation_p.E180K|CARD9_uc011mdx.1_Missense_Mutation_p.E76K|CARD9_uc010nbj.2_Missense_Mutation_p.E180K	NM_052813	NP_434700	Q9H257	CARD9_HUMAN	caspase recruitment domain protein 9 isoform 1	180	Potential.				positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of JNK cascade|positive regulation of stress-activated MAPK cascade|regulation of apoptosis	cytoplasm	CARD domain binding|protein homodimerization activity			pancreas(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;4.58e-06)|Epithelial(140;5.65e-06)		TAGTTCTCCTCCTTGCAGCGC	0.682													7	11					0	0	0.003080	0	0
SEC16A	9919	broad.mit.edu	37	9	139371356	139371356	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:139371356G>A	uc004chx.2	-	3	1021	c.712C>T	c.(712-714)CCC>TCC	p.P238S	SEC16A_uc004chv.3_5'Flank|SEC16A_uc004chw.2_Missense_Mutation_p.P238S|SEC16A_uc010nbn.2_Missense_Mutation_p.P238S|SEC16A_uc010nbo.1_Missense_Mutation_p.P238S	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	60					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		ACCCCGCTGGGAACAGGTCCT	0.657													7	23					0	0	0.003080	0	0
NOTCH1	4851	broad.mit.edu	37	9	139410075	139410075	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:139410075G>A	uc004chz.2	-	11	1763	c.1763C>T	c.(1762-1764)ACC>ATC	p.T588I	NOTCH1_uc004cia.1_5'Flank	NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	588	Extracellular (Potential).|EGF-like 15; calcium-binding (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		GCAGAGGCAGGTGAAGGTGGC	0.692			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			5	12					0	0	0.014758	0	0
CACNA1B	774	broad.mit.edu	37	9	140991040	140991040	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:140991040G>A	uc004cog.2	+	36	5344	c.5199G>A	c.(5197-5199)TGG>TGA	p.W1733*	CACNA1B_uc004coi.2_Nonsense_Mutation_p.W945*|CACNA1B_uc004cok.1_RNA|CACNA1B_uc010ncp.1_Intron	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1733	EF-hand.|Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	TCCGGGTCTGGGCTGAATACG	0.562													11	49					0	0	0.008291	0	0
MXRA5	25878	broad.mit.edu	37	X	3239114	3239114	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:3239114C>T	uc004crg.3	-	5	4769	c.4612G>A	c.(4612-4614)GAA>AAA	p.E1538K		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1538						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GCTTCTGTTTCTGGATTCCCC	0.433													30	20					0	0	0.009535	0	0
FRMPD4	9758	broad.mit.edu	37	X	12712545	12712545	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:12712545C>T	uc004cuz.1	+	9	1411	c.905C>T	c.(904-906)CCA>CTA	p.P302L	FRMPD4_uc011mij.1_Missense_Mutation_p.P294L	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	302	FERM.				positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						AGGAGAGATCCAGTTGCTTTC	0.403													12	18					0	0	0.016723	0	0
TMEM27	57393	broad.mit.edu	37	X	15646196	15646196	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:15646196C>T	uc004cxc.1	-	6	823	c.567G>A	c.(565-567)ATG>ATA	p.M189I		NM_020665	NP_065716	Q9HBJ8	TMM27_HUMAN	transmembrane protein 27 precursor	189	Cytoplasmic (Potential).				proteolysis	integral to membrane	metallopeptidase activity|peptidyl-dipeptidase activity			ovary(1)	1	Hepatocellular(33;0.183)					CAATTGTGATCATGTTTTCAC	0.428													10	5					0	0	0.008291	0	0
PDK3	5165	broad.mit.edu	37	X	24521544	24521544	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:24521544C>T	uc004dbg.2	+	4	650	c.421C>T	c.(421-423)CCT>TCT	p.P141S	PDK3_uc004dbh.2_Missense_Mutation_p.P141S	NM_005391	NP_005382	Q15120	PDK3_HUMAN	pyruvate dehydrogenase kinase 3 isoform 2	141	Histidine kinase.				glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	ATP binding|protein binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6						TGGGTTTGATCCTTTCATTAG	0.378													15	16					0	0	0.004007	0	0
FAM47A	158724	broad.mit.edu	37	X	34148746	34148746	+	Silent	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:34148746A>G	uc004ddg.2	-	1	1683	c.1650T>C	c.(1648-1650)AGT>AGC	p.S550S		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	550										ovary(4)|central_nervous_system(1)	5						ACACCCGACGACTCTTGGGAA	0.607													20	19					0	0	0.010504	0	0
FAM47A	158724	broad.mit.edu	37	X	34149812	34149812	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:34149812G>A	uc004ddg.2	-	1	617	c.584C>T	c.(583-585)CCG>CTG	p.P195L		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	195	Pro-rich.									ovary(4)|central_nervous_system(1)	5						ATGGGACACCGGAGTCTCGGG	0.612													23	21					0	0	0.016522	0	0
CXorf22	170063	broad.mit.edu	37	X	36007508	36007508	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:36007508G>A	uc004ddj.2	+	16	2845	c.2786G>A	c.(2785-2787)GGA>GAA	p.G929E	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	929										large_intestine(1)|lung(1)|ovary(1)	3						CCAGAAGAAGGAGAATTTATT	0.383													7	9					0	0	0.001984	0	0
XK	7504	broad.mit.edu	37	X	37586969	37586969	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:37586969G>A	uc004ddq.2	+	3	671	c.589G>A	c.(589-591)GAT>AAT	p.D197N		NM_021083	NP_066569	P51811	XK_HUMAN	membrane transport protein XK	197	Extracellular (Potential).				amino acid transport	integral to membrane	protein binding|transporter activity				0		all_lung(315;0.175)				AATCAAGTACGATGAGTATGA	0.478													4	2					0	0	0.009096	0	0
SSX1	6756	broad.mit.edu	37	X	48116699	48116699	+	Missense_Mutation	SNP	C	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:48116699C>A	uc004djb.1	+	2	114	c.23C>A	c.(22-24)GCA>GAA	p.A8E		NM_005635	NP_005626	Q16384	SSX1_HUMAN	synovial sarcoma, X breakpoint 1	8					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|transcription corepressor activity		SS18/SSX1(1169)	soft_tissue(1169)	1169						GACACCTTTGCAAAGAGACCC	0.552													26	16					1.36615e-20	1.42893e-20	0.013726	1	0
CACNA1F	778	broad.mit.edu	37	X	49063311	49063311	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:49063311G>A	uc004dnb.2	-	45	5332	c.5270C>T	c.(5269-5271)TCC>TTC	p.S1757F	CACNA1F_uc010nip.2_Missense_Mutation_p.S1746F	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	1757	Cytoplasmic (Potential).				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	ATCTAGGTAGGAAAGCCTGTG	0.632													17	7					0	0	0.008871	0	0
FAAH2	158584	broad.mit.edu	37	X	57337090	57337090	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:57337090G>A	uc004dvc.2	+	3	489	c.340G>A	c.(340-342)GAA>AAA	p.E114K		NM_174912	NP_777572	Q6GMR7	FAAH2_HUMAN	fatty acid amide hydrolase 2	114						integral to membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|hydrolase activity			ovary(3)	3						GCAGGAAGATGAAGCCACCCT	0.408										HNSCC(52;0.14)			3	4					0	0	0.004672	0	0
DGAT2L6	347516	broad.mit.edu	37	X	69424330	69424330	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:69424330G>A	uc004dxx.1	+	6	920	c.823G>A	c.(823-825)GGC>AGC	p.G275S		NM_198512	NP_940914	Q6ZPD8	DG2L6_HUMAN	diacylglycerol O-acyltransferase 2-like 6	275					lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity			ovary(1)	1						CGGATCCTGGGGCTTCCTGCC	0.473													12	5					0	0	0.016723	0	0
SLC7A3	84889	broad.mit.edu	37	X	70146735	70146735	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:70146735G>A	uc004dyn.2	-	9	1601	c.1443C>T	c.(1441-1443)TCC>TCT	p.S481S	SLC7A3_uc004dyo.2_Silent_p.S481S	NM_032803	NP_116192	Q8WY07	CTR3_HUMAN	solute carrier family 7 (cationic amino acid	481	Helical; Name=11; (Potential).				cellular nitrogen compound metabolic process	integral to membrane|plasma membrane				ovary(1)|kidney(1)	2	Renal(35;0.156)				L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	CAAGCAATGAGGAACAAACAT	0.473													12	8					0	0	0.013537	0	0
CDX4	1046	broad.mit.edu	37	X	72674248	72674248	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:72674248G>A	uc011mqk.1	+	3	682	c.682G>A	c.(682-684)GAG>AAG	p.E228K		NM_005193	NP_005184	O14627	CDX4_HUMAN	caudal type homeobox 4	228	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Renal(35;0.156)					CAGAGCCAAGGAGAGAAAGAT	0.388													7	1					0	0	0.003080	0	0
XIST	7503	broad.mit.edu	37	X	73050952	73050952	+	RNA	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:73050952G>A	uc004ebm.1	-	4		c.11731C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						CTGGGACCAGGAAAGTATCTT	0.463													7	9					0	0	0.004482	0	0
XIST	7503	broad.mit.edu	37	X	73062381	73062381	+	RNA	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:73062381C>T	uc004ebm.1	-	1		c.10208G>A				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GCCTGCTTTTCATAGTCAACA	0.393													8	7					0	0	0.003080	0	0
XIST	7503	broad.mit.edu	37	X	73068291	73068291	+	RNA	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:73068291G>A	uc004ebm.1	-	1		c.4298C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						TCCCCTGCTGGAATACAAAGG	0.433													9	8					0	0	0.004482	0	0
KIAA2022	340533	broad.mit.edu	37	X	73961064	73961064	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:73961064C>T	uc004eby.2	-	3	3945	c.3328G>A	c.(3328-3330)GAA>AAA	p.E1110K		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1110					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TTGATTTTTTCCACACTGTCC	0.443													11	8					0	0	0.016723	0	0
MAGEE2	139599	broad.mit.edu	37	X	75003386	75003386	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:75003386C>T	uc004ecj.1	-	1	1686	c.1501G>A	c.(1501-1503)GAG>AAG	p.E501K		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	501	MAGE 2.									ovary(1)|skin(1)	2						TCCACAGCCTCCCTATATTGT	0.488													20	20					0	0	0.008871	0	0
ATP7A	538	broad.mit.edu	37	X	77301936	77301936	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:77301936A>G	uc004ecx.3	+	23	4532	c.4372A>G	c.(4372-4374)AAT>GAT	p.N1458D		NM_000052	NP_000043	Q04656	ATP7A_HUMAN	ATPase, Cu++ transporting, alpha polypeptide	1458	Cytoplasmic (Potential).				ATP biosynthetic process|blood vessel development|blood vessel remodeling|cartilage development|cellular copper ion homeostasis|cerebellar Purkinje cell differentiation|collagen fibril organization|copper ion import|detoxification of copper ion|dopamine metabolic process|elastic fiber assembly|elastin biosynthetic process|epinephrine metabolic process|hair follicle morphogenesis|locomotory behavior|lung alveolus development|negative regulation of metalloenzyme activity|neuroprotection|peptidyl-lysine modification|pigmentation|positive regulation of metalloenzyme activity|positive regulation of oxidoreductase activity|pyramidal neuron development|regulation of oxidative phosphorylation|removal of superoxide radicals|serotonin metabolic process|skin development|T-helper cell differentiation|tryptophan metabolic process	basolateral plasma membrane|cytosol|endoplasmic reticulum|endoplasmic reticulum|integral to membrane|late endosome|neuron projection|neuronal cell body|perinuclear region of cytoplasm|trans-Golgi network|trans-Golgi network transport vesicle	ATP binding|copper-dependent protein binding|copper-exporting ATPase activity|superoxide dismutase copper chaperone activity				0						CCGGATTGTTAATTATAGCAG	0.443													75	51					0	0	0.014410	0	0
GPR174	84636	broad.mit.edu	37	X	78426957	78426957	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:78426957C>T	uc004edg.1	+	1	489	c.453C>T	c.(451-453)CTC>CTT	p.L151L		NM_032553	NP_115942	Q9BXC1	GP174_HUMAN	putative purinergic receptor FKSG79	151	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(1)|central_nervous_system(1)	2						CCTGTGTACTCTTTCCACTCC	0.483										HNSCC(63;0.18)			13	4					0	0	0.016723	0	0
IRS4	8471	broad.mit.edu	37	X	107976623	107976623	+	Silent	SNP	A	G	G			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:107976623A>G	uc004eoc.2	-	1	2985	c.2952T>C	c.(2950-2952)CGT>CGC	p.R984R		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	984						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						AGGGGTTGGCACGTGGTATAG	0.478													34	29					0	0	0.013726	0	0
GUCY2F	2986	broad.mit.edu	37	X	108708565	108708565	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:108708565G>A	uc004eod.3	-	3	1114	c.838C>T	c.(838-840)CCT>TCT	p.P280S	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	280	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						GCATCATAAGGAACAAAGACG	0.473													34	36					0	0	0.019004	0	0
TRPC5	7224	broad.mit.edu	37	X	111090650	111090650	+	Silent	SNP	A	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:111090650A>T	uc004epl.1	-	6	2311	c.1392T>A	c.(1390-1392)CGT>CGA	p.R464R	TRPC5_uc004epm.1_Silent_p.R464R	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	464	Extracellular (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						CCTCCCTTGGACGAGAACCAT	0.428													10	5					0	0	0.006214	0	0
KLHL13	90293	broad.mit.edu	37	X	117043518	117043518	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:117043518G>A	uc004eql.2	-	5	1174	c.1112C>T	c.(1111-1113)TCG>TTG	p.S371L	KLHL13_uc004eqk.2_Missense_Mutation_p.S320L|KLHL13_uc011mtn.1_Missense_Mutation_p.S211L|KLHL13_uc011mto.1_Missense_Mutation_p.S365L|KLHL13_uc011mtp.1_Missense_Mutation_p.S373L|KLHL13_uc004eqm.2_Missense_Mutation_p.S320L|KLHL13_uc011mtq.1_Missense_Mutation_p.S355L	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	371	Kelch 1.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						GGGGGCTAACGATTTCCACTC	0.488													13	68					0	0	0.013537	0	0
ODZ1	10178	broad.mit.edu	37	X	123518401	123518401	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:123518401G>A	uc004euj.2	-	29	6423	c.6359C>T	c.(6358-6360)GCC>GTC	p.A2120V	ODZ1_uc011muj.1_Missense_Mutation_p.A2126V|ODZ1_uc010nqy.2_Missense_Mutation_p.A2127V	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	2120	Extracellular (Potential).|YD 16.				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CATCCAGTAGGCAATTGCCTT	0.378													14	6					0	0	0.020292	0	0
IGSF1	3547	broad.mit.edu	37	X	130408775	130408775	+	Silent	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:130408775G>A	uc004ewd.2	-	18	3787	c.3549C>T	c.(3547-3549)TGC>TGT	p.C1183C	IGSF1_uc004ewe.3_Silent_p.C1177C|IGSF1_uc004ewf.2_Silent_p.C1163C	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	1183	Extracellular (Potential).|Ig-like C2-type 12.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						GGGGTCCTCGGCACTGAAGGG	0.507													30	44					0	0	0.006320	0	0
GPR112	139378	broad.mit.edu	37	X	135427812	135427812	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:135427812C>T	uc004ezu.1	+	6	2238	c.1947C>T	c.(1945-1947)TTC>TTT	p.F649F	GPR112_uc010nsb.1_Silent_p.F444F|GPR112_uc010nsc.1_Silent_p.F416F	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	649	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					CCCATCTGTTCTCCAGCAATG	0.473													4	5					0	0	0.014758	0	0
SPANXE	171489	broad.mit.edu	37	X	140785720	140785720	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:140785720C>T	uc004fbq.2	-	2	289	c.196G>A	c.(196-198)GAA>AAA	p.E66K		NM_145665	NP_663698	Q8TAD1	SPNXE_HUMAN	SPANX family, member E	66						cytoplasm|nucleus					0	Acute lymphoblastic leukemia(192;7.65e-05)					TTCACCAGTTCCTCTGGAGAT	0.458													112	81					0	0	0.014410	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993849	140993849	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:140993849G>A	uc004fbt.2	+	4	945	c.659G>A	c.(658-660)AGA>AAA	p.R220K	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	220							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCCCCTGAGAGAACTCAGAGT	0.493										HNSCC(15;0.026)			44	69					0	0	0.009718	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994883	140994883	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:140994883C>T	uc004fbt.2	+	4	1979	c.1693C>T	c.(1693-1695)CCT>TCT	p.P565S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	565							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCACTACTTTCCTCAGAGCCC	0.572										HNSCC(15;0.026)			113	108					0	0	0.014410	0	0
SPANXN3	139067	broad.mit.edu	37	X	142596803	142596803	+	Silent	SNP	T	C	C			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:142596803T>C	uc004fbw.2	-	2	355	c.267A>G	c.(265-267)GTA>GTG	p.V89V		NM_001009609	NP_001009609	Q5MJ09	SPXN3_HUMAN	SPANX-N3 protein	89										ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CAGATAAGTCTACGCCTTCGT	0.438													31	19					0	0	0.010818	0	0
PASD1	139135	broad.mit.edu	37	X	150844505	150844505	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:150844505G>A	uc004fev.3	+	16	2544	c.2212G>A	c.(2212-2214)GAT>AAT	p.D738N		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	738						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GGGACCTCCTGATCCACAGGC	0.517													55	43					0	0	0.014410	0	0
GABRQ	55879	broad.mit.edu	37	X	151821087	151821087	+	Silent	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:151821087C>T	uc004ffp.1	+	9	1262	c.1242C>T	c.(1240-1242)CTC>CTT	p.L414L		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	414						cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CGGAAAGCCTCGGTTCTTTGA	0.632													26	17					0	0	0.021523	0	0
SPRY3	10251	broad.mit.edu	37	X	155004002	155004002	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:155004002C>T	uc004fnq.1	+	2	923	c.469C>T	c.(469-471)CCC>TCC	p.P157S	SPRY3_uc010nvl.1_Intron	NM_005840	NP_005831	O43610	SPY3_HUMAN	sprouty homolog 3	157	SPR.|Cys-rich.				multicellular organismal development|regulation of signal transduction	cytoplasm|membrane					0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CAAGTGCGTCCCCTGCACAGC	0.592													27	94					0	0	0.006320	0	0
IL9R	3581	broad.mit.edu	37	X	155239703	155239703	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chrX:155239703G>A	uc004fnv.1	+	9	1374	c.1195G>A	c.(1195-1197)GAG>AAG	p.E399K	IL9R_uc004fnu.1_3'UTR	NM_002186	NP_002177	Q01113	IL9R_HUMAN	interleukin 9 receptor precursor	399	Cytoplasmic (Potential).				cell proliferation	extracellular space|integral to plasma membrane	interleukin-9 receptor activity				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					AGGGTGTACGGAGTGGAGGGT	0.607													11	25					0	0	0.003163	0	0
LOC650623	650623	broad.mit.edu	37	10	81443226	81443226	+	RNA	DEL	A	-	-	rs3832674		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr10:81443226delA	uc010qlu.1	+	1		c.496delA				NR_027512				Homo sapiens BEN domain containing 3 pseudogene (LOC650623), non-coding RNA.												0						CTGTGGCAGCACTGGGGCAGC	0.537													5	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	43283606	43283606	+	RNA	DEL	A	-	-			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:43283606delA	uc001mxe.1	-	2		c.1330delT								Homo sapiens cDNA FLJ44864 fis, clone BRALZ2013621, moderately similar to Heterogeneous nuclear ribonucleoprotein K.																		AAGCAAATGTAAAAAAAAAAA	0.388													4	9	---	---	---	---					
SNX32	254122	broad.mit.edu	37	11	65617683	65617684	+	Frame_Shift_Ins	INS	-	A	A	rs143066310		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr11:65617683_65617684insA	uc001ofr.2	+	4	442_443	c.315_316insA	c.(313-318)GGCGAGfs	p.G105fs	SNX32_uc009yqt.2_3'UTR|SNX32_uc010rop.1_Frame_Shift_Ins_p.A145fs	NM_152760	NP_689973	Q86XE0	SNX32_HUMAN	sorting nexin 6B	105_106	PX.				cell communication|protein transport		phosphatidylinositol binding				0				READ - Rectum adenocarcinoma(159;0.171)		AGAAATTGGGCGAGGGGGACAG	0.599													28	65	---	---	---	---					
AMIGO2	347902	broad.mit.edu	37	12	47471738	47471753	+	Frame_Shift_Del	DEL	TAACCAGACTTCCATT	-	-			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr12:47471738_47471753delTAACCAGACTTCCATT	uc001rpm.2	-	3	1688_1703	c.1033_1048delAATGGAAGTCTGGTTA	c.(1033-1050)AATGGAAGTCTGGTTATAfs	p.N345fs	FAM113B_uc001rpn.2_5'Flank|AMIGO2_uc001rpk.2_Frame_Shift_Del_p.N345fs|AMIGO2_uc001rpl.2_Frame_Shift_Del_p.N345fs	NM_001143668	NP_001137140	Q86SJ2	AMGO2_HUMAN	adhesion molecule with Ig-like domain 2	345_350	Extracellular (Potential).|Ig-like C2-type.				heterophilic cell-cell adhesion|homophilic cell adhesion	integral to membrane|nucleus|plasma membrane				ovary(1)|skin(1)	2	Renal(347;0.138)|Lung SC(27;0.192)					GGGCTTTCTATAACCAGACTTCCATTGTGAAACACG	0.421													14	86	---	---	---	---					
TEP1	7011	broad.mit.edu	37	14	20854287	20854287	+	Frame_Shift_Del	DEL	A	-	-			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr14:20854287delA	uc001vxe.2	-	20	2969	c.2929delT	c.(2929-2931)TATfs	p.Y977fs	TEP1_uc010ahk.2_Frame_Shift_Del_p.Y327fs|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Frame_Shift_Del_p.Y869fs	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	977					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		ATGTATCCATAACGGGAGCCC	0.552													38	114	---	---	---	---					
SUPT6H	6830	broad.mit.edu	37	17	27002005	27002006	+	Frame_Shift_Ins	INS	-	A	A			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr17:27002005_27002006insA	uc002hby.2	+	5	453_454	c.363_364insA	c.(361-366)GTCAAAfs	p.V121fs	SUPT6H_uc010crt.2_Frame_Shift_Ins_p.V121fs	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	121_122	Asp/Glu-rich.				chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					ACCGGCGTGTCAAAAAAATGTC	0.485													43	55	---	---	---	---					
PLXNB1	5364	broad.mit.edu	37	3	48461137	48461137	+	Frame_Shift_Del	DEL	T	-	-			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:48461137delT	uc003csw.2	-	11	2828	c.2558delA	c.(2557-2559)GACfs	p.D853fs	PLXNB1_uc003csu.2_Intron|PLXNB1_uc003csx.2_Frame_Shift_Del_p.D853fs|PLXNB1_uc010hjx.1_Intron	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	853	Extracellular (Potential).				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CGTCCACTCGTCCGCCTCGGG	0.682													11	17	---	---	---	---					
CPN2	1370	broad.mit.edu	37	3	194062271	194062276	+	In_Frame_Del	DEL	CAGGTT	-	-			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr3:194062271_194062276delCAGGTT	uc003fts.2	-	2	1246_1251	c.1156_1161delAACCTG	c.(1156-1161)AACCTGdel	p.NL386del		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	386_387					protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		CCAGGTTGAACAGGTTGTAGTTGGTG	0.597													13	60	---	---	---	---					
CNPY3	10695	broad.mit.edu	37	6	42897358	42897360	+	In_Frame_Del	DEL	TGC	-	-			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:42897358_42897360delTGC	uc003ota.3	+	1	499_501	c.50_52delTGC	c.(49-54)TTGCTG>TTG	p.17_18LL>L	CNPY3_uc003osy.2_RNA|CNPY3_uc003osz.2_In_Frame_Del_p.17_18LL>L|CNPY3_uc003otc.3_5'UTR|CNPY3_uc003otb.3_5'UTR	NM_006586	NP_006577	Q9BT09	CNPY3_HUMAN	trinucleotide repeat containing 5 precursor	17_18					innate immune response	endoplasmic reticulum				ovary(1)	1	Colorectal(47;0.196)		all cancers(41;0.000954)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|OV - Ovarian serous cystadenocarcinoma(102;0.0218)|Kidney(15;0.0388)			CTTCTTCCCTtgctgctgctgct	0.606													2	4	---	---	---	---					
C6orf153	88745	broad.mit.edu	37	6	42989414	42989419	+	In_Frame_Del	DEL	GCCGGG	-	-	rs3833662		TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr6:42989414_42989419delGCCGGG	uc003otp.1	+	1	30_35	c.22_27delGCCGGG	c.(22-27)GCCGGGdel	p.AG14del		NM_033112	NP_149103	Q96EU6	RRP36_HUMAN	hypothetical protein LOC88745	14_15					ribosomal small subunit biogenesis|rRNA processing	nucleolus					0			Colorectal(64;0.00237)|all cancers(41;0.0034)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0539)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			TAACTAccgcgccggggccggggccg	0.529													3	5	---	---	---	---					
CDK5	1020	broad.mit.edu	37	7	150754217	150754217	+	Frame_Shift_Del	DEL	T	-	-			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr7:150754217delT	uc003wir.1	-	2	129	c.68delA	c.(67-69)AACfs	p.N23fs	CDK5_uc003wis.1_Frame_Shift_Del_p.N23fs|SLC4A2_uc003wit.3_5'Flank	NM_004935	NP_004926	Q00535	CDK5_HUMAN	cyclin-dependent kinase 5 isoform 1	23	Protein kinase.				activation of pro-apoptotic gene products|blood coagulation|cell division|cell proliferation|embryo development|negative regulation of transcription, DNA-dependent|positive regulation of neuron apoptosis	axon|cytosol|dendrite|growth cone|lamellipodium|membrane|neuromuscular junction|neuronal cell body	acetylcholine receptor activator activity|ATP binding|cyclin-dependent protein kinase activity|ErbB-2 class receptor binding|ErbB-3 class receptor binding|tau-protein kinase activity			lung(1)|central_nervous_system(1)	2		Breast(660;0.159)|Ovarian(593;0.182)	OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)|LUSC - Lung squamous cell carcinoma(290;0.008)|Lung(243;0.00942)|BRCA - Breast invasive adenocarcinoma(188;0.242)		AGTCTCCCGGTTTTTGGCCTT	0.582													7	355	---	---	---	---					
ZBTB34	403341	broad.mit.edu	37	9	129642541	129642541	+	Frame_Shift_Del	DEL	C	-	-			TCGA-D9-A1JW-06A-11D-A19A-08	TCGA-D9-A1JW-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c8fb207-38ca-4eb4-b494-42fb039cd116	08bc1316-dd43-45f3-9aa2-4b4fd97e4d7f	g.chr9:129642541delC	uc004bqm.3	+	2	948	c.851delC	c.(850-852)TCCfs	p.S284fs		NM_001099270	NP_001092740	Q8NCN2	ZBT34_HUMAN	zinc finger and BTB domain containing 34	284					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CACGCATACTCCTATTCCCAA	0.522													17	44	---	---	---	---					
