Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRB1	5542	broad.mit.edu	37	12	11506566	11506566	+	Silent	SNP	C	T	T			TCGA-DA-A3F2-06A-11D-A20D-08	TCGA-DA-A3F2-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	635a1c2f-50dd-4f35-b90c-d83ca860fba1	330fdd5b-7536-4de7-be64-511963e75655	g.chr12:11506566C>T	uc001qzw.1	-	4	508	c.471G>A	c.(469-471)AAG>AAA	p.K157K	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	218	9.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			GTCCTTGTGGCTTTCCTGGAG	0.597000													6	69					0	0	0.008291	0	0
TUBA1B	10376	broad.mit.edu	37	12	49522057	49522057	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A3F2-06A-11D-A20D-08	TCGA-DA-A3F2-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	635a1c2f-50dd-4f35-b90c-d83ca860fba1	330fdd5b-7536-4de7-be64-511963e75655	g.chr12:49522057C>A	uc001rtm.2	-	4	1261	c.1040G>T	c.(1039-1041)TGC>TTC	p.C347F	TUBA1B_uc001rto.2_Missense_Mutation_p.C312F|TUBA1B_uc001rtk.2_Missense_Mutation_p.C312F|TUBA1B_uc001rtl.2_Missense_Mutation_p.C312F|TUBA1B_uc001rtn.2_Missense_Mutation_p.C194F|uc010smg.1_5'UTR	NM_006082	NP_006073	P68363	TBA1B_HUMAN	tubulin, alpha, ubiquitous	347					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding				0						GCCAGTGGGGCACCAATCCAC	0.557000													6	56					0.00307968	0.00379037	0.003080	1	0
TAOK2	9344	broad.mit.edu	37	16	29998500	29998500	+	Silent	SNP	G	C	C			TCGA-DA-A3F2-06A-11D-A20D-08	TCGA-DA-A3F2-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	635a1c2f-50dd-4f35-b90c-d83ca860fba1	330fdd5b-7536-4de7-be64-511963e75655	g.chr16:29998500G>C	uc002dva.1	+	16	3690	c.2907G>C	c.(2905-2907)CTG>CTC	p.L969L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Intron|TAOK2_uc002dvc.1_Intron|TAOK2_uc010bzm.1_Silent_p.L976L|TAOK2_uc002dvd.1_Silent_p.L796L	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	969	Leu-rich.|Helical; (Potential).				actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						TGCCCCTCCTGCTGCTGCTGC	0.711000													3	88					0	0	0.009096	0	0
MYH10	4628	broad.mit.edu	37	17	8397110	8397110	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A3F2-06A-11D-A20D-08	TCGA-DA-A3F2-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	635a1c2f-50dd-4f35-b90c-d83ca860fba1	330fdd5b-7536-4de7-be64-511963e75655	g.chr17:8397110C>G	uc002gll.2	-	30	4153	c.4057G>C	c.(4057-4059)GAG>CAG	p.E1353Q	MYH10_uc002glm.2_Missense_Mutation_p.E1384Q|MYH10_uc010cnx.2_Missense_Mutation_p.E1362Q	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	1353	Potential.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						TCCTCCTCCTCCTGCTGCTCC	0.587000													3	71					0	0	0.004672	0	0
ZNF708	7562	broad.mit.edu	37	19	21476519	21476519	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A3F2-06A-11D-A20D-08	TCGA-DA-A3F2-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	635a1c2f-50dd-4f35-b90c-d83ca860fba1	330fdd5b-7536-4de7-be64-511963e75655	g.chr19:21476519T>C	uc002npq.1	-	4	1447	c.1249A>G	c.(1249-1251)AAG>GAG	p.K417E	ZNF708_uc002npr.1_Missense_Mutation_p.K353E|ZNF708_uc010ecs.1_Missense_Mutation_p.K353E	NM_021269	NP_067092	P17019	ZN708_HUMAN	zinc finger protein 708	417					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(4)|skin(2)	6						TAGGGTTTCTTTCCAGTATGA	0.343000													3	57					0	0	0.004672	0	0
ZNF845	91664	broad.mit.edu	37	19	53855365	53855365	+	Silent	SNP	A	G	G			TCGA-DA-A3F2-06A-11D-A20D-08	TCGA-DA-A3F2-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	635a1c2f-50dd-4f35-b90c-d83ca860fba1	330fdd5b-7536-4de7-be64-511963e75655	g.chr19:53855365A>G	uc010ydv.1	+	4	1554	c.1437A>G	c.(1435-1437)ACA>ACG	p.T479T	ZNF845_uc010ydw.1_Silent_p.T479T	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	479	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCAGTCAGACATCATCCCTTG	0.378000													4	123					0	0	0.001984	0	0
GGT3P	2679	broad.mit.edu	37	22	18778601	18778601	+	RNA	SNP	C	T	T			TCGA-DA-A3F2-06A-11D-A20D-08	TCGA-DA-A3F2-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	635a1c2f-50dd-4f35-b90c-d83ca860fba1	330fdd5b-7536-4de7-be64-511963e75655	g.chr22:18778601C>T	uc011ago.1	-	2		c.219G>A			GGT3P_uc011agp.1_RNA|GGT3P_uc002zob.1_RNA					Homo sapiens cDNA clone IMAGE:5761295, **** WARNING: chimeric clone ****.												0						GCTTGGCATCCGCGGCCACGG	0.552000													6	12					0	0	0.001984	0	0
CYP2D7P1	1564	broad.mit.edu	37	22	42538870	42538870	+	Missense_Mutation	SNP	A	C	C	rs2982057	by1000genomes	TCGA-DA-A3F2-06A-11D-A20D-08	TCGA-DA-A3F2-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	635a1c2f-50dd-4f35-b90c-d83ca860fba1	330fdd5b-7536-4de7-be64-511963e75655	g.chr22:42538870A>C	uc003bci.2	-	3	475	c.94T>G	c.(94-96)TCG>GCG	p.S32A	CYP2D7P1_uc003bcg.2_5'Flank|CYP2D7P1_uc003bch.2_5'Flank|CYP2D7P1_uc010gyv.2_Intron|CYP2D7P1_uc010gyw.2_RNA|CYP2D7P1_uc010gyx.1_Missense_Mutation_p.S32A	NR_002570				SubName: Full=Cytochrome P450 2D6;          EC=1.14.14.1;												0						CCATAGCGCGACAGGAACACC	0.687000													3	52					0	0	0.000602	0	0
MUC4	4585	broad.mit.edu	37	3	195511945	195511945	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F2-06A-11D-A20D-08	TCGA-DA-A3F2-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	635a1c2f-50dd-4f35-b90c-d83ca860fba1	330fdd5b-7536-4de7-be64-511963e75655	g.chr3:195511945G>A	uc011bto.1	-	2	6966	c.6506C>T	c.(6505-6507)GCA>GTA	p.A2169V	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		ACCTGTGGATGCTGAGGAAGT	0.572000													3	12					0	0	0.009096	0	0
CLASP2	23122	broad.mit.edu	37	3	33602361	33602361	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DA-A3F2-06A-11D-A20D-08	TCGA-DA-A3F2-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	635a1c2f-50dd-4f35-b90c-d83ca860fba1	330fdd5b-7536-4de7-be64-511963e75655	g.chr3:33602361delT	uc003cfu.2	-	27	3223	c.2869delA	c.(2869-2871)ATGfs	p.M957fs	CLASP2_uc003cfs.2_Frame_Shift_Del_p.M164fs|CLASP2_uc003cft.2_RNA|CLASP2_uc010hgb.2_RNA|CLASP2_uc011axt.1_Frame_Shift_Del_p.M557fs	NM_015097	NP_055912	B2RTR1	B2RTR1_HUMAN	CLIP-associating protein 2	966										ovary(3)|central_nervous_system(1)	4						TCAGCACCCATTTTTTTTAGT	0.343													8	164	---	---	---	---					
HTT	3064	broad.mit.edu	37	4	3076604	3076609	+	In_Frame_Del	DEL	CAGCAG	-	-	rs10618869		TCGA-DA-A3F2-06A-11D-A20D-08	TCGA-DA-A3F2-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	635a1c2f-50dd-4f35-b90c-d83ca860fba1	330fdd5b-7536-4de7-be64-511963e75655	g.chr4:3076604_3076609delCAGCAG	uc011bvq.1	+	2	203_208	c.58_63delCAGCAG	c.(58-63)CAGCAGdel	p.QQ38del		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	38_Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		CAAGTCCTTCcagcagcagcagcagc	0.330													3	4	---	---	---	---					
