Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
VWA1	64856	broad.mit.edu	37	1	1372863	1372863	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:1372863C>T	uc001afs.2	+	2	850	c.630C>T	c.(628-630)CTC>CTT	p.L210L	VWA1_uc001afr.2_5'UTR	NM_022834	NP_073745	Q6PCB0	VWA1_HUMAN	von Willebrand factor A domain containing 1	210	VWFA.					basement membrane					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		GCTCCATTCTCGGTATGCGGG	0.617													28	45					0	0	1	0	0
ATAD3C	219293	broad.mit.edu	37	1	1392547	1392548	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:1392547_1392548GG>AA	uc001aft.2	+	8	1723_1724	c.728_729GG>AA	c.(727-729)CGG>CAA	p.R243Q		NM_001039211	NP_001034300	Q5T2N8	ATD3C_HUMAN	ATPase family, AAA domain containing 3C	243							ATP binding|nucleoside-triphosphatase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		GCCTTCCTTCGGAAGCGAGCCA	0.644													42	37					0	0	1	0	0
UBE4B	10277	broad.mit.edu	37	1	10228260	10228260	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:10228260C>T	uc001aqs.3	+	24	3978	c.3265C>T	c.(3265-3267)CTG>TTG	p.L1089L	UBE4B_uc001aqr.3_Silent_p.L960L|UBE4B_uc010oai.1_RNA|UBE4B_uc010oaj.1_Silent_p.L544L|UBE4B_uc001aqu.2_5'Flank	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	1089					apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding			ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		TTACCTCGCCCTGGCCACCGA	0.582													11	38					0	0	1	0	0
KIF1B	23095	broad.mit.edu	37	1	10435402	10435402	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:10435402C>T	uc001aqx.3	+	48	5581	c.5379C>T	c.(5377-5379)GCC>GCT	p.A1793A	KIF1B_uc001aqw.3_Silent_p.A1747A|KIF1B_uc001aqy.2_Silent_p.A1767A|KIF1B_uc001aqz.2_Silent_p.A1793A|KIF1B_uc001ara.2_Silent_p.A1753A|KIF1B_uc001arb.2_Silent_p.A1779A	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	1793	PH.				anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		GGTTGTATGCCTTCAACCCAC	0.328													49	118					0	0	1	0	0
C1orf127	148345	broad.mit.edu	37	1	11009763	11009763	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:11009763G>A	uc010oao.1	-	7	766	c.761C>T	c.(760-762)TCC>TTC	p.S254F	C1orf127_uc001arr.1_Missense_Mutation_p.S236F|C1orf127_uc001ars.1_Missense_Mutation_p.S254F	NM_173507	NP_775778	B7ZLG7	B7ZLG7_HUMAN	hypothetical protein LOC148345	254										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;0.000226)|all_lung(284;0.000302)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.71e-07)|COAD - Colon adenocarcinoma(227;7.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000305)|Kidney(185;0.000785)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|READ - Rectum adenocarcinoma(331;0.0509)		CCACACCTGGGAGGAAGCAGC	0.647													3	12					0	0	1	0	0
VPS13D	55187	broad.mit.edu	37	1	12460343	12460343	+	Missense_Mutation	SNP	G	C	C	rs140805551		TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:12460343G>C	uc001atv.2	+	61	11881	c.11740G>C	c.(11740-11742)GCA>CCA	p.A3914P	VPS13D_uc001atw.2_Missense_Mutation_p.A3889P|VPS13D_uc001atx.2_Missense_Mutation_p.A3101P|VPS13D_uc009vnl.2_RNA	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	3913					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		GCAAGTCAACGCAGTGAAGTT	0.537													20	41					0	0	1	0	0
PRAMEF12	390999	broad.mit.edu	37	1	12837370	12837370	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:12837370C>T	uc001aui.2	+	3	1107	c.1080C>T	c.(1078-1080)ATC>ATT	p.I360I		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	360	LRR 2.									ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		ACTGTGGGATCGTGGATTCCC	0.617													45	127					0	0	1	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12885347	12885347	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:12885347G>A	uc001auk.2	-	4	960	c.764C>T	c.(763-765)TCG>TTG	p.S255L		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	255	LRR 3.										0						GACCTTTAACGAGGTCTTCAG	0.493													121	294					0	0	1	0	0
LOC649330	649330	broad.mit.edu	37	1	12907895	12907895	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:12907895T>C	uc009vno.2	-	1	343	c.248A>G	c.(247-249)AAC>AGC	p.N83S	HNRNPCL1_uc010obf.1_Missense_Mutation_p.N83S	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	83							nucleic acid binding|nucleotide binding				0						TGCAGCCAGGTTAATATCTAC	0.488													58	198					0	0	1	0	0
EPHB2	2048	broad.mit.edu	37	1	23219523	23219523	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:23219523C>T	uc009vqj.1	+	7	1720	c.1575C>T	c.(1573-1575)TTC>TTT	p.F525F	EPHB2_uc001bge.2_Silent_p.F525F|EPHB2_uc001bgf.2_Silent_p.F525F|EPHB2_uc010odu.1_Silent_p.F525F	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	525	Fibronectin type-III 2.|Extracellular (Potential).				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		AGATGTACTTCCAGACCATGA	0.522									Hereditary_Prostate_Cancer				24	86					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34076675	34076675	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:34076675G>A	uc001bxn.1	-	41	6218	c.6189C>T	c.(6187-6189)TCC>TCT	p.S2063S	CSMD2_uc001bxm.1_Silent_p.S2103S|CSMD2_uc001bxo.1_Silent_p.S976S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2063	CUB 12.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GCCGATTCTGGGAGTGGTCGC	0.567													12	22					0	0	1	0	0
ADPRHL2	54936	broad.mit.edu	37	1	36557578	36557578	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:36557578C>T	uc001bzt.2	+	4	637	c.584C>T	c.(583-585)GCC>GTC	p.A195V	ADPRHL2_uc001bzu.2_Missense_Mutation_p.A41V	NM_017825	NP_060295	Q9NX46	ARHL2_HUMAN	ADP-ribosylhydrolase like 2	195						cytoplasm|nucleus	metal ion binding|poly(ADP-ribose) glycohydrolase activity			pancreas(1)	1		Myeloproliferative disorder(586;0.0393)				ATCCTGCAGGCCCTGGCTGTG	0.632													17	61					0	0	1	0	0
PTPRF	5792	broad.mit.edu	37	1	44072484	44072484	+	Splice_Site	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:44072484G>A	uc001cjr.2	+	21	4043	c.3703_splice	c.e21-1	p.K1235_splice	PTPRF_uc001cjs.2_Splice_Site_p.K1226_splice|PTPRF_uc001cju.2_Splice_Site_p.K613_splice|PTPRF_uc009vwt.2_Splice_Site_p.K795_splice|PTPRF_uc001cjv.2_Splice_Site_p.K695_splice|PTPRF_uc001cjw.2_Splice_Site_p.K461_splice	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F						transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				CCGGGCCACAGAAGCGCTATG	0.627													28	105					0	0	1	0	0
C1orf175	374977	broad.mit.edu	37	1	55118723	55118723	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:55118723G>A	uc010ooe.1	+	3	448	c.124G>A	c.(124-126)GCT>ACT	p.A42T	C1orf175_uc001cxq.2_RNA|C1orf175_uc001cxo.2_Missense_Mutation_p.A42T|C1orf175_uc010ooc.1_Intron|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Intron|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Missense_Mutation_p.A42T|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	42						integral to membrane	binding				0						CCCAGACATGGCTCAGGTGCC	0.572													37	81					0	0	1	0	0
LRRC7	57554	broad.mit.edu	37	1	70486792	70486792	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:70486792G>A	uc001dep.2	+	14	1441	c.1411G>A	c.(1411-1413)GAA>AAA	p.E471K	LRRC7_uc009wbg.2_Silent_p.T2T	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	471						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						AGAAGATGACGAAAATGCTGG	0.388													21	71					0	0	1	0	0
ELTD1	64123	broad.mit.edu	37	1	79470894	79470894	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:79470894G>A	uc001diq.3	-	2	189	c.33C>T	c.(31-33)TCC>TCT	p.S11S		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	11					neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		TCAACAAAGTGGAAAAAACCA	0.318													13	57					0	0	1	0	0
LPPR5	163404	broad.mit.edu	37	1	99380403	99380403	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:99380403T>A	uc001dsb.2	-	5	1094	c.872A>T	c.(871-873)CAG>CTG	p.Q291L	LPPR5_uc001dsc.2_Missense_Mutation_p.Q291L	NM_001037317	NP_001032394	Q32ZL2	LPPR5_HUMAN	phosphatidic acid phosphatase type 2d isoform 1	291						integral to membrane	hydrolase activity				0						CATTGGCATCTGTGCCAGATT	0.358													60	136					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103347260	103347260	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:103347260C>T	uc001dul.2	-	65	5351	c.5033G>A	c.(5032-5034)GGA>GAA	p.G1678E	COL11A1_uc001duk.2_Missense_Mutation_p.G874E|COL11A1_uc001dum.2_Missense_Mutation_p.G1690E|COL11A1_uc001dun.2_Missense_Mutation_p.G1639E|COL11A1_uc009weh.2_Missense_Mutation_p.G1562E	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1678	Fibrillar collagen NC1.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TACCAGTTTTCCCCTCTTAAA	0.358													16	46					0	0	1	0	0
SLC25A24	29957	broad.mit.edu	37	1	108697741	108697741	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:108697741G>A	uc001dvn.3	-	6	900	c.686C>T	c.(685-687)TCA>TTA	p.S229L	SLC25A24_uc001dvm.2_Missense_Mutation_p.S210L	NM_013386	NP_037518	Q6NUK1	SCMC1_HUMAN	solute carrier family 25 member 24 isoform 1	229	Solcar 1.|Mitochondrial matrix (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	calcium ion binding			ovary(1)	1		all_epithelial(167;3.72e-05)|all_lung(203;0.000567)|Lung NSC(277;0.0011)|Melanoma(281;0.211)		Colorectal(144;0.0345)|Lung(183;0.0971)|COAD - Colon adenocarcinoma(174;0.127)|Epithelial(280;0.134)		CATTTTGTCTGATTTTGAACC	0.358													28	62					0	0	1	0	0
OVGP1	5016	broad.mit.edu	37	1	111957568	111957568	+	Missense_Mutation	SNP	G	A	A	rs113984808	by1000genomes	TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:111957568G>A	uc001eba.2	-	11	1611	c.1555C>T	c.(1555-1557)CCT>TCT	p.P519S	OVGP1_uc001eaz.2_Missense_Mutation_p.P481S|OVGP1_uc010owb.1_Missense_Mutation_p.P167S	NM_002557	NP_002548	Q12889	OVGP1_HUMAN	oviductal glycoprotein 1 precursor	519					chitin catabolic process|female pregnancy|single fertilization	transport vesicle	cation binding|chitinase activity			ovary(4)|large_intestine(1)	5		all_cancers(81;8.18e-06)|all_epithelial(167;5.64e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000302)		Lung(183;0.0253)|Colorectal(144;0.033)|all cancers(265;0.0552)|Epithelial(280;0.0802)|COAD - Colon adenocarcinoma(174;0.123)|LUSC - Lung squamous cell carcinoma(189;0.14)		TTTTCCCCAGGGGTCACAGAC	0.567													47	55					0	0	1	0	0
AMPD1	270	broad.mit.edu	37	1	115218614	115218614	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:115218614G>A	uc001efe.1	-	11	1483	c.1399C>T	c.(1399-1401)CGT>TGT	p.R467C	AMPD1_uc001eff.1_Missense_Mutation_p.R463C	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	467					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	TTCTTGGAACGGAACACATCA	0.428													41	86					0	0	1	0	0
TBX15	6913	broad.mit.edu	37	1	119427481	119427481	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:119427481C>T	uc001ehl.1	-	8	1680	c.1365G>A	c.(1363-1365)GGG>GGA	p.G455G	TBX15_uc009whj.1_Silent_p.G279G	NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	561						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		TGTGCTCCATCCCTGACGGCA	0.547													34	60					0	0	1	0	0
HAO2	51179	broad.mit.edu	37	1	119929368	119929368	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:119929368G>A	uc001ehq.1	+	6	1037	c.685G>A	c.(685-687)GAT>AAT	p.D229N	HAO2_uc001ehr.1_Missense_Mutation_p.D229N	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2	229	FMN hydroxy acid dehydrogenase.				fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		GACAAAAGAGGATGCAGAGTT	0.458													66	98					0	0	1	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144854558	144854558	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:144854558G>A	uc001elw.3	-	42	7203	c.6912C>T	c.(6910-6912)AAC>AAT	p.N2304N	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Silent_p.N2198N|PDE4DIP_uc001elv.3_Silent_p.N1311N	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	2304	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		CCTTCTGCTGGTTGGCGTTCT	0.512			T	PDGFRB	MPD								34	333					0	0	1	0	0
OTUD7B	56957	broad.mit.edu	37	1	149937770	149937770	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:149937770G>A	uc001etn.2	-	5	892	c.536C>T	c.(535-537)ACC>ATC	p.T179I	OTUD7B_uc001eto.2_Missense_Mutation_p.T100I	NM_020205	NP_064590	Q6GQQ9	OTU7B_HUMAN	zinc finger protein Cezanne	179	Catalytic.|TRAF-binding.				negative regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|microtubule cytoskeleton|nucleus	cysteine-type peptidase activity|DNA binding|protein binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	Breast(34;0.0009)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.247)			CCTCTGAGAGGTGGGATCCAC	0.512													14	32					0	0	1	0	0
SELENBP1	8991	broad.mit.edu	37	1	151337513	151337513	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:151337513C>T	uc001exx.2	-	11	1192	c.1145G>A	c.(1144-1146)CGG>CAG	p.R382Q	SELENBP1_uc010pcy.1_Missense_Mutation_p.R424Q|SELENBP1_uc001exy.2_Missense_Mutation_p.R279Q|SELENBP1_uc001exz.2_Missense_Mutation_p.R279Q|SELENBP1_uc010pcz.1_Missense_Mutation_p.R320Q|SELENBP1_uc009wms.2_Missense_Mutation_p.R218Q|SELENBP1_uc009wmt.2_Missense_Mutation_p.R279Q|SELENBP1_uc001eya.2_Missense_Mutation_p.R318Q|SELENBP1_uc009wmu.2_Silent_p.T250T	NM_003944	NP_003935	Q13228	SBP1_HUMAN	selenium binding protein 1	382					protein transport	cytosol|membrane|nucleolus	protein binding|selenium binding				0	Lung SC(34;0.00471)|Ovarian(49;0.00871)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			TCCAGCCACCCGTTTTCCCTT	0.577													4	11					0	0	1	0	0
TCHHL1	126637	broad.mit.edu	37	1	152058026	152058026	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:152058026C>T	uc001ezo.1	-	3	2197	c.2132G>A	c.(2131-2133)GGA>GAA	p.G711E		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	711							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			TGTTGCTCTTCCTTTCTCTTC	0.443													61	198					0	0	1	0	0
NPR1	4881	broad.mit.edu	37	1	153665827	153665827	+	Splice_Site	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:153665827G>A	uc001fcs.3	+	22	3545	c.3124_splice	c.e22-1	p.G1042_splice	NPR1_uc010pdz.1_Splice_Site_p.G788_splice|NPR1_uc010pea.1_Splice_Site_p.G520_splice	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor						body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	TTTCCCTCCAGGGCAAAGGCA	0.607													26	95					0	0	1	0	0
GON4L	54856	broad.mit.edu	37	1	155792215	155792216	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:155792215_155792216GG>AA	uc001flz.2	-	4	846_847	c.749_750CC>TT	c.(748-750)ACC>ATT	p.T250I	GON4L_uc001fly.1_Missense_Mutation_p.T250I|GON4L_uc009wrh.1_Missense_Mutation_p.T250I|GON4L_uc001fma.1_Missense_Mutation_p.T250I|GON4L_uc001fmc.2_Missense_Mutation_p.T250I|GON4L_uc001fmd.3_Missense_Mutation_p.T250I|GON4L_uc009wri.2_5'UTR|GON4L_uc001fme.2_Missense_Mutation_p.T78I|GON4L_uc001fmf.2_5'Flank	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	250					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					GTTTCCTCTTGGTACCCTTTTT	0.441													61	122					0	0	1	0	0
OR10J3	441911	broad.mit.edu	37	1	159283655	159283655	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:159283655G>A	uc010piu.1	-	1	795	c.795C>T	c.(793-795)TCC>TCT	p.S265S		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	265	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					GGGAACTCTGGGACTTAGGCT	0.532													53	105					0	0	1	0	0
FCRL6	343413	broad.mit.edu	37	1	159779926	159779926	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:159779926C>T	uc001fud.3	+	6	971	c.929C>T	c.(928-930)CCT>CTT	p.P310L	FCRL6_uc001fuc.2_Missense_Mutation_p.P317L|FCRL6_uc009wsz.1_Missense_Mutation_p.P215L|FCRL6_uc009wta.2_Missense_Mutation_p.P310L	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	310	Helical; (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					TGGCTGGTTCCTTGGCTTCCT	0.512													77	123					0	0	1	0	0
ATP1A2	477	broad.mit.edu	37	1	160109463	160109463	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:160109463G>A	uc001fvc.2	+	21	3006	c.2874G>A	c.(2872-2874)GAG>GAA	p.E958E	ATP1A2_uc001fvd.2_Silent_p.E677E	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	958	Helical; (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			TCCTGGAGGAGACGGCGTTGG	0.572													43	63					0	0	1	0	0
KIFAP3	22920	broad.mit.edu	37	1	169961392	169961392	+	Missense_Mutation	SNP	A	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:169961392A>C	uc001ggv.2	-	11	1459	c.1188T>G	c.(1186-1188)AAT>AAG	p.N396K	KIFAP3_uc010plx.1_Missense_Mutation_p.N98K	NM_014970	NP_055785	Q92845	KIFA3_HUMAN	kinesin-associated protein 3	396	ARM 2.				blood coagulation|plus-end-directed vesicle transport along microtubule|protein complex assembly|signal transduction	centrosome|condensed nuclear chromosome|cytosol|endoplasmic reticulum|kinesin II complex|spindle microtubule	kinesin binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TGTAGTTGTCATTGCCTAGGA	0.313													11	35					0	0	1	0	0
BAT2L2	23215	broad.mit.edu	37	1	171510756	171510756	+	Missense_Mutation	SNP	T	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:171510756T>G	uc010pmg.1	+	16	4411	c.4145T>G	c.(4144-4146)GTT>GGT	p.V1382G	BAT2L2_uc010pmh.1_Missense_Mutation_p.V359G	NM_015172	NP_055987	Q9Y520	PRC2C_HUMAN	HBxAg transactivated protein 2	1382	Arg-rich.						protein C-terminus binding				0						CAGTCAGAAGTTCCTAAACCA	0.498													15	23					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176679259	176679259	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:176679259G>A	uc001gkz.2	+	11	4762	c.3598G>A	c.(3598-3600)GAA>AAA	p.E1200K	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1200					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CTCCTCTCATGAAGACAAGAA	0.443													46	79					0	0	1	0	0
RASAL2	9462	broad.mit.edu	37	1	178436548	178436548	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:178436548G>A	uc001glr.2	+	15	3372	c.3247G>A	c.(3247-3249)GAT>AAT	p.D1083N	RASAL2_uc001glq.2_Missense_Mutation_p.D1224N|RASAL2_uc009wxc.2_Missense_Mutation_p.D597N	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	1083					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						GAAAATAATTGATGCACAGGT	0.428													29	52					0	0	1	0	0
DHX9	1660	broad.mit.edu	37	1	182853892	182853892	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:182853892C>T	uc001gpr.2	+	27	3568	c.3405C>T	c.(3403-3405)ATC>ATT	p.I1135I	DHX9_uc001gps.2_Silent_p.I921I|DHX9_uc001gpt.2_Silent_p.I414I|DHX9_uc009wyd.2_Silent_p.I100I	NM_001357	NP_001348	Q08211	DHX9_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 9	1135					CRD-mediated mRNA stabilization|nuclear mRNA splicing, via spliceosome	centrosome|CRD-mediated mRNA stability complex|nucleolus|nucleoplasm|ribonucleoprotein complex	ATP binding|ATP-dependent DNA helicase activity|ATP-dependent RNA helicase activity|DNA binding|double-stranded RNA binding|protein binding			ovary(2)	2						TGAACATGATCCGTCAGATCT	0.483													45	89					0	0	1	0	0
CFHR1	3078	broad.mit.edu	37	1	196800945	196800945	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:196800945G>A	uc001gtn.2	+	6	923	c.809G>A	c.(808-810)CGA>CAA	p.R270Q	CFHR1_uc001gtm.2_Missense_Mutation_p.R174Q	NM_002113	NP_002104	Q03591	FHR1_HUMAN	complement factor H-related 1 precursor	270					complement activation	extracellular space					0						GTAATATCCCGAGAAATTATG	0.328													17	122					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197404430	197404430	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:197404430A>G	uc001gtz.2	+	9	3572	c.3437A>G	c.(3436-3438)AAC>AGC	p.N1146S	CRB1_uc010poz.1_Missense_Mutation_p.N1122S|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.N1034S|CRB1_uc010ppb.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.N627S|CRB1_uc001gub.1_Missense_Mutation_p.N795S	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1146	Extracellular (Potential).|EGF-like 15.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TGCAACTCCAACCCCTGTTTG	0.428													22	105					0	0	1	0	0
LAD1	3898	broad.mit.edu	37	1	201356167	201356167	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:201356167G>A	uc001gwm.2	-	3	557	c.322C>T	c.(322-324)CCC>TCC	p.P108S	LAD1_uc009wzu.1_Missense_Mutation_p.P130S	NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	108						basement membrane	structural molecule activity				0						TCCTGGATGGGGGCCTGTGCA	0.627													15	41					0	0	1	0	0
RNPEP	6051	broad.mit.edu	37	1	201970536	201970536	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:201970536C>T	uc001gxd.2	+	7	1266	c.1237C>T	c.(1237-1239)CCC>TCC	p.P413S	RNPEP_uc001gxe.2_Missense_Mutation_p.P114S|RNPEP_uc001gxf.2_Missense_Mutation_p.P282S	NM_020216	NP_064601	Q9H4A4	AMPB_HUMAN	arginyl aminopeptidase	413					leukotriene biosynthetic process		epoxide hydrolase activity|zinc ion binding			upper_aerodigestive_tract(1)	1				KIRC - Kidney renal clear cell carcinoma(1967;3.23e-08)|Colorectal(1306;0.005)		TAATGAGACCCCCTACGAGAA	0.493													14	66					0	0	1	0	0
PPFIA4	8497	broad.mit.edu	37	1	203024701	203024701	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:203024701C>T	uc001gyz.2	+	3	1046	c.453C>T	c.(451-453)TCC>TCT	p.S151S	PPFIA4_uc009xaj.2_Silent_p.S782S|PPFIA4_uc010pqf.1_Silent_p.S364S|PPFIA4_uc001gza.2_Silent_p.S151S|PPFIA4_uc001gzb.1_5'Flank	NM_015053	NP_055868	O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f	151					cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						CGGCCCTGTCCCTGGCCAGCG	0.642													27	42					0	0	1	0	0
OPTC	26254	broad.mit.edu	37	1	203465214	203465214	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:203465214G>A	uc001gzu.1	+	2	197	c.81G>A	c.(79-81)AGG>AGA	p.R27R		NM_014359	NP_055174	Q9UBM4	OPT_HUMAN	opticin precursor	27						proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding				0			BRCA - Breast invasive adenocarcinoma(75;0.109)			GGAAGGAGAGGAAGAGGAGAG	0.552													9	41					0	0	1	0	0
PLEKHA6	22874	broad.mit.edu	37	1	204228404	204228405	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:204228404_204228405GG>AT	uc001hau.2	-	8	1305_1306	c.988_989CC>AT	c.(988-990)CCG>ATG	p.P330M	PLEKHA6_uc009xaw.1_5'Flank|PLEKHA6_uc009xax.1_5'Flank|PLEKHA6_uc009xay.1_5'Flank|PLEKHA6_uc009xaz.1_5'Flank|PLEKHA6_uc009xba.1_5'Flank|PLEKHA6_uc009xbb.1_5'Flank|PLEKHA6_uc009xbc.1_5'Flank	NM_014935	NP_055750	Q9Y2H5	PKHA6_HUMAN	phosphoinositol 3-phosphate-binding protein-3	330	Pro-rich.									ovary(3)|pancreas(1)	4	all_cancers(21;0.0222)|Breast(84;0.179)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.229)			GTCTTCAGGCGGGGGTACCCCC	0.619													17	57					0	0	1	0	0
CNTN2	6900	broad.mit.edu	37	1	205028255	205028255	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:205028255C>T	uc001hbr.2	+	6	800	c.531C>T	c.(529-531)ATC>ATT	p.I177I	CNTN2_uc001hbq.1_Silent_p.I68I|CNTN2_uc009xbi.2_Silent_p.I68I|CNTN2_uc001hbs.2_5'UTR	NM_005076	NP_005067	Q02246	CNTN2_HUMAN	contactin 2 precursor	177	Ig-like C2-type 2.				axon guidance|clustering of voltage-gated potassium channels	anchored to membrane|juxtaparanode region of axon|myelin sheath|node of Ranvier|synapse part	identical protein binding			ovary(1)	1	all_cancers(21;0.144)|Breast(84;0.0437)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			CCAACTTCATCCCGACGGACG	0.587													19	50					0	0	1	0	0
CTSE	1510	broad.mit.edu	37	1	206317619	206317619	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:206317619G>A	uc001hdu.2	+	1	161	c.43G>A	c.(43-45)GGA>AGA	p.G15R	CTSE_uc001hdv.2_Missense_Mutation_p.G15R|CTSE_uc010prs.1_5'UTR	NM_001910	NP_001901	P14091	CATE_HUMAN	cathepsin E isoform a preproprotein	15					antigen processing and presentation of exogenous peptide antigen via MHC class II|digestion|proteolysis	endosome	aspartic-type endopeptidase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(75;0.0754)			CCTGGAGCTGGGAGAGGCCCA	0.597													14	62					0	0	1	0	0
C4BPB	725	broad.mit.edu	37	1	207273178	207273178	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:207273178C>T	uc001hfj.2	+	7	793	c.663C>T	c.(661-663)AAC>AAT	p.N221N	C4BPB_uc001hfi.2_Silent_p.N220N|C4BPB_uc001hfk.2_Silent_p.N220N|C4BPB_uc001hfl.2_Silent_p.N221N|C4BPB_uc009xcd.2_Silent_p.N272N|C4BPB_uc001hfm.2_Silent_p.N221N	NM_001017365	NP_001017365	P20851	C4BPB_HUMAN	complement component 4 binding protein, beta	221					blood coagulation|complement activation, classical pathway|innate immune response	extracellular region				ovary(1)	1						CCATGGAGAACTTTATGCAAC	0.393													35	119					0	0	1	0	0
TMEM206	55248	broad.mit.edu	37	1	212553313	212553314	+	Missense_Mutation	DNP	GG	AA	AA	rs138060998		TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:212553313_212553314GG>AA	uc001hjc.3	-	5	729_730	c.561_562CC>TT	c.(559-564)TTCCGC>TTTTGC	p.R188C	TMEM206_uc010pte.1_Missense_Mutation_p.R249C	NM_018252	NP_060722	Q9H813	TM206_HUMAN	transmembrane protein 206	188	Extracellular (Potential).					integral to membrane				breast(1)	1				all cancers(67;0.012)|OV - Ovarian serous cystadenocarcinoma(81;0.0121)|GBM - Glioblastoma multiforme(131;0.0377)|Epithelial(68;0.148)		TTGTTCAGGCGGAACTGGAGGA	0.525													57	113					0	0	1	0	0
SLC30A10	55532	broad.mit.edu	37	1	220089176	220089176	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:220089176C>T	uc001hlw.2	-	4	1284	c.1073G>A	c.(1072-1074)GGA>GAA	p.G358E	SLC30A10_uc001hlu.1_Intron|SLC30A10_uc001hlv.2_Missense_Mutation_p.G113E|SLC30A10_uc001hlx.2_Missense_Mutation_p.G133E	NM_018713	NP_061183	Q6XR72	ZNT10_HUMAN	solute carrier family 30 (zinc transporter),	358	Cytoplasmic (Potential).				zinc ion transport	integral to membrane|plasma membrane	cation transmembrane transporter activity				0				GBM - Glioblastoma multiforme(131;0.051)|all cancers(67;0.209)		ATCTTGATATCCCCTGTCCTT	0.458													51	134					0	0	1	0	0
DISP1	84976	broad.mit.edu	37	1	223176467	223176467	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:223176467C>T	uc001hnu.1	+	8	1875	c.1728C>T	c.(1726-1728)GTC>GTT	p.V576V		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	576	SSD.				diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		ATGCTTTTGTCCTGTGTGATG	0.413													36	129					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228433355	228433355	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:228433355G>A	uc009xez.1	+	12	3767	c.3723G>A	c.(3721-3723)GGG>GGA	p.G1241G	OBSCN_uc001hsn.2_Silent_p.G1241G	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1241	Ig-like 12.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GCGAGGCTGGGGGCCAGAGAG	0.512													37	107					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228434484	228434484	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:228434484C>T	uc009xez.1	+	13	4057	c.4013C>T	c.(4012-4014)TCC>TTC	p.S1338F	OBSCN_uc001hsn.2_Missense_Mutation_p.S1338F	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1338	Ig-like 13.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CAGCGGCTCTCCTTCCACCTG	0.592													53	112					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228482060	228482060	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:228482060G>A	uc009xez.1	+	42	11383	c.11339G>A	c.(11338-11340)GGG>GAG	p.G3780E	OBSCN_uc001hsn.2_Missense_Mutation_p.G3780E|OBSCN_uc001hsq.1_Missense_Mutation_p.G1036E	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3780	Ig-like 38.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GTGGATGCCGGGGAGTACTCG	0.602													51	105					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228539042	228539042	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:228539042T>C	uc009xez.1	+	78	18484	c.18440T>C	c.(18439-18441)CTG>CCG	p.L6147P	OBSCN_uc001hsn.2_Missense_Mutation_p.L6147P|OBSCN_uc001hsr.1_Missense_Mutation_p.L776P|OBSCN_uc009xfa.2_5'Flank	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	6147	Ig-like 53.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GACGGGGCCCTGCTGACCACT	0.642													3	6					0	0	1	0	0
OR2M7	391196	broad.mit.edu	37	1	248487730	248487730	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:248487730G>A	uc010pzk.1	-	1	141	c.141C>T	c.(139-141)CTC>CTT	p.L47L		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	47	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GGTAGATGAGGAGAACCATGA	0.527													146	433					0	0	1	0	0
ITIH2	3698	broad.mit.edu	37	10	7768994	7768994	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr10:7768994C>T	uc001ijs.2	+	10	1228	c.1066C>T	c.(1066-1068)CGA>TGA	p.R356*		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	356	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						CCAGAACATTCGAACTTGGAG	0.398													37	60					0	0	1	0	0
C10orf47	254427	broad.mit.edu	37	10	11894099	11894099	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr10:11894099C>T	uc001ikx.2	+	2	177	c.23C>T	c.(22-24)TCA>TTA	p.S8L	uc001iky.1_Intron	NM_153256	NP_694988	Q86WR7	CJ047_HUMAN	hypothetical protein LOC254427	8	Ser-rich.									central_nervous_system(1)	1						CACCGGAAATCAGACGCATCT	0.622													7	19					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21120489	21120489	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr10:21120489C>T	uc001iqi.2	-	15	1870	c.1473G>A	c.(1471-1473)GAG>GAA	p.E491E	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	491	Nebulin 13.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TAATTTCAGTCTCCAGATCTC	0.428													4	46					0	0	1	0	0
ANKRD26	22852	broad.mit.edu	37	10	27332407	27332407	+	Silent	SNP	A	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr10:27332407A>G	uc001ith.2	-	20	2278	c.2106T>C	c.(2104-2106)TCT>TCC	p.S702S	ANKRD26_uc001itg.2_Silent_p.S389S|ANKRD26_uc009xku.1_Silent_p.S703S	NM_014915	NP_055730	Q9UPS8	ANR26_HUMAN	ankyrin repeat domain 26	702						centrosome				large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|skin(1)	4						TCTTGTAACTAGAGTGGGGTA	0.363													14	19					0	0	1	0	0
PTCHD3	374308	broad.mit.edu	37	10	27687523	27687523	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr10:27687523C>T	uc001itu.2	-	4	2122	c.2004G>A	c.(2002-2004)TGG>TGA	p.W668*		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	668					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						CATCTTTATCCCAGTAGTCAA	0.308													24	27					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37490229	37490229	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr10:37490229G>A	uc001iza.1	+	31	2776	c.2677G>A	c.(2677-2679)GAT>AAT	p.D893N		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	949						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AAAAGAAATGGATAAAATAAG	0.318													37	42					0	0	1	0	0
ZNF488	118738	broad.mit.edu	37	10	48371251	48371251	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr10:48371251G>A	uc001jex.2	+	2	881	c.719G>A	c.(718-720)TGG>TAG	p.W240*	ZNF488_uc001jey.2_Nonsense_Mutation_p.W133*	NM_153034	NP_694579	Q96MN9	ZN488_HUMAN	zinc finger protein 488	240					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CCTACACTGTGGCTGGAGCAT	0.582													27	44					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	52390189	52390189	+	RNA	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr10:52390189G>A	uc001jjf.1	+	2		c.882G>A								Homo sapiens cDNA FLJ12320 fis, clone MAMMA1002082.																		GATATCAATCGAACTGTAGTA	0.383													11	27					0	0	1	0	0
PBLD	64081	broad.mit.edu	37	10	70048327	70048327	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr10:70048327C>T	uc001jns.1	-	8	807	c.604G>A	c.(604-606)GGA>AGA	p.G202R	PBLD_uc001jnr.1_Missense_Mutation_p.G169R|PBLD_uc001jnt.1_Missense_Mutation_p.G202R|PBLD_uc001jnu.1_Missense_Mutation_p.G202R|PBLD_uc001jnv.1_3'UTR	NM_022129	NP_071412	P30039	PBLD_HUMAN	MAWD binding protein isoform a	202					biosynthetic process		isomerase activity			skin(2)|ovary(1)	3						CCAGGCTCTCCTTTAAGGGTA	0.458													15	42					0	0	1	0	0
UNC5B	219699	broad.mit.edu	37	10	73046564	73046564	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr10:73046564C>T	uc001jro.2	+	5	1116	c.671C>T	c.(670-672)ACC>ATC	p.T224I	UNC5B_uc001jrp.2_Missense_Mutation_p.T224I	NM_170744	NP_734465	Q8IZJ1	UNC5B_HUMAN	unc-5 homolog B precursor	224	Ig-like C2-type.|Extracellular (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane				ovary(2)|lung(1)	3						GCCAACTATACCTGCGTGGCC	0.627													74	107					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73574739	73574739	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr10:73574739G>A	uc001jrx.3	+	68	10146	c.9769G>A	c.(9769-9771)GGA>AGA	p.G3257R	CDH23_uc001jsg.3_Missense_Mutation_p.G1017R|CDH23_uc001jsh.3_Missense_Mutation_p.G982R|CDH23_uc001jsi.3_Missense_Mutation_p.G982R|CDH23_uc001jsj.3_Missense_Mutation_p.G154R|CDH23_uc010qjr.1_Missense_Mutation_p.G119R	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	3257	Cytoplasmic (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CGAGGAGCCAGGAGACCACAG	0.667													9	15					0	0	1	0	0
AGAP11	119385	broad.mit.edu	37	10	88769090	88769090	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr10:88769090C>T	uc001kee.2	+	12	2285	c.1081C>T	c.(1081-1083)CTC>TTC	p.L361F	AGAP11_uc001kef.2_Intron	NM_133447	NP_597704	Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase	361	C4-type.|Arf-GAP.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						CTTGGGAGTCCTCATGTGTAT	0.557													128	188					0	0	1	0	0
NOC3L	64318	broad.mit.edu	37	10	96116935	96116935	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr10:96116935C>T	uc001kjq.1	-	4	592	c.504G>A	c.(502-504)AAG>AAA	p.K168K	NOC3L_uc009xuk.1_5'UTR	NM_022451	NP_071896	Q8WTT2	NOC3L_HUMAN	nucleolar complex associated 3 homolog	168						nuclear speck|nucleolus	binding			ovary(1)	1		Colorectal(252;0.0897)				ACTCACCTGGCTTCTCCCTAG	0.323													46	80					0	0	1	0	0
PKD2L1	9033	broad.mit.edu	37	10	102054402	102054402	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr10:102054402A>G	uc001kqx.1	-	9	1932	c.1549T>C	c.(1549-1551)TTC>CTC	p.F517L	PKD2L1_uc009xwm.1_Missense_Mutation_p.F470L	NM_016112	NP_057196	Q9P0L9	PK2L1_HUMAN	polycystic kidney disease 2-like 1	517	Extracellular (Potential).				signal transduction	integral to membrane	calcium activated cation channel activity|calcium ion binding|cytoskeletal protein binding			ovary(4)	4		Colorectal(252;0.117)		Epithelial(162;6.15e-10)|all cancers(201;5.14e-08)		ATTATCCGGAACTGAGTGAAA	0.512													7	100					0	0	1	0	0
SMC3	9126	broad.mit.edu	37	10	112352867	112352867	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr10:112352867C>T	uc001kze.2	+	18	1975	c.1849C>T	c.(1849-1851)CCC>TCC	p.P617S		NM_005445	NP_005436	Q9UQE7	SMC3_HUMAN	structural maintenance of chromosomes 3	617	Flexible hinge.				cell division|DNA mediated transformation|DNA repair|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic spindle organization|negative regulation of DNA endoreduplication|signal transduction|sister chromatid cohesion	basement membrane|chromatin|chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nuclear matrix|nucleoplasm|spindle pole	ATP binding|dynein binding|microtubule motor activity|protein heterodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(234;0.0848)|Lung NSC(174;0.238)		Epithelial(162;0.00206)|all cancers(201;0.0227)|BRCA - Breast invasive adenocarcinoma(275;0.127)		GAGGTACAATCCCAGATTTGA	0.383													7	23					0	0	1	0	0
PKP3	11187	broad.mit.edu	37	11	397067	397067	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:397067G>A	uc001lpc.2	+	3	642	c.566G>A	c.(565-567)GGG>GAG	p.G189E		NM_007183	NP_009114	Q9Y446	PKP3_HUMAN	plakophilin 3	189					cell adhesion	desmosome|nucleus	binding			skin(1)	1		all_cancers(49;3.02e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CTGGGGCCCGGGGGCCTGGAC	0.711													7	42					0	0	1	0	0
OR52K1	390036	broad.mit.edu	37	11	4511034	4511034	+	Missense_Mutation	SNP	C	T	T	rs144863882	byFrequency	TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:4511034C>T	uc001lza.1	+	1	904	c.904C>T	c.(904-906)CGT>TGT	p.R302C		NM_001005171	NP_001005171	Q8NGK4	O52K1_HUMAN	olfactory receptor, family 52, subfamily K,	302	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.76e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0836)|LUSC - Lung squamous cell carcinoma(625;0.192)		CAAGCAGATTCGTGAGTATGT	0.433													27	107					0	0	1	0	0
OR51E1	143503	broad.mit.edu	37	11	4673985	4673985	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:4673985T>A	uc001lzi.3	+	2	373	c.229T>A	c.(229-231)TCC>ACC	p.S77T		NM_152430	NP_689643	Q8TCB6	O51E1_HUMAN	olfactory receptor, family 51, subfamily E,	76	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(3)|pancreas(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;7.37e-14)|GBM - Glioblastoma multiforme(2;2.85e-05)|BRCA - Breast invasive adenocarcinoma(625;0.00222)|LUSC - Lung squamous cell carcinoma(625;0.19)		CATCCTCATCTCCACCTCATC	0.458													16	60					0	0	1	0	0
OR52N2	390077	broad.mit.edu	37	11	5841918	5841918	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:5841918T>C	uc010qzp.1	+	1	353	c.353T>C	c.(352-354)ATG>ACG	p.M118T	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	118	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGGGTGCTCATGCTCATGGCC	0.537													18	92					0	0	1	0	0
OR52L1	338751	broad.mit.edu	37	11	6007662	6007662	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:6007662G>A	uc001mcd.2	-	1	554	c.499C>T	c.(499-501)CTG>TTG	p.L167L		NM_001005173	NP_001005173	Q8NGH7	O52L1_HUMAN	olfactory receptor, family 52, subfamily L,	167	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.98e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCCCTCACCAGCACCACCATT	0.498													10	49					0	0	1	0	0
CCKBR	887	broad.mit.edu	37	11	6291937	6291937	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:6291937G>A	uc001mcp.2	+	4	908	c.715G>A	c.(715-717)GGG>AGG	p.G239R	CCKBR_uc001mcq.2_Missense_Mutation_p.G167R|CCKBR_uc001mcr.2_Missense_Mutation_p.G239R|CCKBR_uc001mcs.2_Missense_Mutation_p.G239R|CCKBR_uc001mct.1_5'Flank	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	239	Helical; Name=5; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	CGTGGCCTACGGGCTTATCTC	0.582													16	61					0	0	1	0	0
HPX	3263	broad.mit.edu	37	11	6462112	6462112	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:6462112G>A	uc001mdg.2	-	1	143	c.82C>T	c.(82-84)CCG>TCG	p.P28S	HPX_uc009yfc.2_RNA|HPX_uc010rai.1_Missense_Mutation_p.P28S	NM_000613	NP_000604	P02790	HEMO_HUMAN	hemopexin precursor	28	O-glycosylated at one, two and three sites.				cellular iron ion homeostasis|interspecies interaction between organisms	extracellular space	heme transporter activity|metal ion binding|protein binding				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;5.46e-08)|BRCA - Breast invasive adenocarcinoma(625;0.19)		TTTACTCACGGAGGAAGAGGG	0.572													6	20					0	0	1	0	0
OR5P3	120066	broad.mit.edu	37	11	7847091	7847091	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:7847091G>A	uc010rbg.1	-	1	429	c.429C>T	c.(427-429)ATC>ATT	p.I143I		NM_153445	NP_703146	Q8WZ94	OR5P3_HUMAN	olfactory receptor, family 5, subfamily P,	143	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TGCCCACTAAGATGATGCAGA	0.517													22	81					0	0	1	0	0
SAA1	6288	broad.mit.edu	37	11	18288502	18288502	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:18288502C>T	uc010rda.1	+	2	291	c.68C>T	c.(67-69)TCG>TTG	p.S23L	SAA1_uc001moa.3_RNA|SAA1_uc010rdb.1_Missense_Mutation_p.S23L	NM_000331	NP_000322	P02735	SAA_HUMAN	serum amyloid A1 preproprotein	23					acute-phase response|elevation of cytosolic calcium ion concentration|innate immune response|lymphocyte chemotaxis|macrophage chemotaxis|negative regulation of inflammatory response|neutrophil chemotaxis|platelet activation|positive regulation of cell adhesion|positive regulation of interleukin-1 secretion	high-density lipoprotein particle	G-protein-coupled receptor binding				0					Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	AGCTTCTTTTCGTTCCTTGGC	0.498													13	48					0	0	1	0	0
CCDC73	493860	broad.mit.edu	37	11	32663547	32663547	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:32663547C>T	uc001mtv.2	-	13	1065	c.1021G>A	c.(1021-1023)GAA>AAA	p.E341K	CCDC73_uc001mtw.1_Missense_Mutation_p.E331K	NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	341	Potential.									ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					AGTGCTTTTTCATGCTCATTT	0.244													10	27					0	0	1	0	0
DGKZ	8525	broad.mit.edu	37	11	46391094	46391094	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:46391094C>T	uc001ncn.1	+	6	1184	c.1059C>T	c.(1057-1059)GTC>GTT	p.V353V	DGKZ_uc001nch.1_Silent_p.V181V|DGKZ_uc010rgq.1_Silent_p.V131V|DGKZ_uc001ncj.1_Silent_p.V131V|DGKZ_uc010rgr.1_Silent_p.V130V|DGKZ_uc001nck.1_5'UTR|DGKZ_uc001ncl.2_Silent_p.V165V|DGKZ_uc001ncm.2_Silent_p.V164V|DGKZ_uc009yky.1_Silent_p.V165V|DGKZ_uc010rgs.1_Silent_p.V165V	NM_001105540	NP_001099010	Q13574	DGKZ_HUMAN	diacylglycerol kinase zeta isoform 4	353					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell migration|intracellular signal transduction|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of mitotic cell cycle|platelet activation	cytoplasm|lamellipodium|nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|diacylglycerol kinase activity|lipid kinase activity|metal ion binding|protein binding|protein C-terminus binding			pancreas(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(35;0.0259)|Lung(87;0.141)		CCAGGAATGTCCGCGAGGTAA	0.587											OREG0020942	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	51					0	0	1	0	0
OR4A47	403253	broad.mit.edu	37	11	48510994	48510994	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:48510994G>A	uc010rhx.1	+	1	650	c.650G>A	c.(649-651)GGT>GAT	p.G217D		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ATCTCTTATGGTGTCATCTTG	0.463													29	97					0	0	1	0	0
FOLH1	2346	broad.mit.edu	37	11	49168403	49168403	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:49168403C>T	uc001ngy.2	-	19	2419	c.2158G>A	c.(2158-2160)GAC>AAC	p.D720N	FOLH1_uc001ngx.2_Nonsense_Mutation_p.W119*|FOLH1_uc001ngz.2_Missense_Mutation_p.D689N|FOLH1_uc009yly.2_Missense_Mutation_p.D705N|FOLH1_uc009ylz.2_Missense_Mutation_p.D674N|FOLH1_uc009yma.2_Missense_Mutation_p.D412N	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	720	Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	TTGGAAGGGTCCACTTTGCTT	0.478													31	96					0	0	1	0	0
FOLH1	2346	broad.mit.edu	37	11	49221845	49221845	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:49221845G>A	uc001ngy.2	-	3	634	c.373C>T	c.(373-375)CCC>TCC	p.P125S	FOLH1_uc001ngz.2_Missense_Mutation_p.P125S|FOLH1_uc009yly.2_Missense_Mutation_p.P110S|FOLH1_uc009ylz.2_Missense_Mutation_p.P110S|FOLH1_uc009yma.2_Intron|FOLH1_uc001nha.2_Missense_Mutation_p.P110S	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	125	Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	ATGTAGTTGGGATGAGTCTTA	0.338													5	11					0	0	1	0	0
OR8K5	219453	broad.mit.edu	37	11	55926911	55926911	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:55926911C>T	uc010rja.1	-	1	883	c.883G>A	c.(883-885)GAA>AAA	p.E295K		NM_001004058	NP_001004058	Q8NH50	OR8K5_HUMAN	olfactory receptor, family 8, subfamily K,	295	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	Esophageal squamous(21;0.00693)	Lung NSC(402;0.197)|all_epithelial(135;0.236)				TTCACCTCTTCGTTTCTTAAG	0.289													17	41					0	0	1	0	0
OR5AP2	338675	broad.mit.edu	37	11	56409763	56409763	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:56409763C>T	uc001njb.1	-	1	153	c.153G>A	c.(151-153)ATG>ATA	p.M51I		NM_001002925	NP_001002925	Q8NGF4	O5AP2_HUMAN	olfactory receptor, family 5, subfamily AP,	51	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						TCAATACAATCATCCCCAAAT	0.423													13	71					0	0	1	0	0
OR5AR1	219493	broad.mit.edu	37	11	56431315	56431315	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:56431315G>A	uc010rjm.1	+	1	154	c.154G>A	c.(154-156)GAC>AAC	p.D52N		NM_001004730	NP_001004730	Q8NGP9	O5AR1_HUMAN	olfactory receptor, family 5, subfamily AR,	52	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GATTACAACAGACACTCAGCT	0.473													53	245					0	0	1	0	0
OR5B3	441608	broad.mit.edu	37	11	58170040	58170040	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:58170040G>A	uc010rkf.1	-	1	843	c.843C>T	c.(841-843)CCC>CCT	p.P281P		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	281	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GGTTCAGCATGGGGATGACCA	0.433													17	85					0	0	1	0	0
OR5B3	441608	broad.mit.edu	37	11	58170043	58170043	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:58170043G>A	uc010rkf.1	-	1	840	c.840C>T	c.(838-840)ATC>ATT	p.I280I		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	280	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TCAGCATGGGGATGACCATTG	0.443													13	84					0	0	1	0	0
VWCE	220001	broad.mit.edu	37	11	61048386	61048386	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:61048386G>A	uc001nra.2	-	8	1388	c.1109C>T	c.(1108-1110)TCA>TTA	p.S370L	VWCE_uc001nrb.2_RNA	NM_152718	NP_689931	Q96DN2	VWCE_HUMAN	von Willebrand factor C and EGF domains	370						extracellular region	calcium ion binding			ovary(1)	1						GCCCCTGGGTGAGGAAGGGGT	0.677													2	4					0	0	1	0	0
CYBASC3	220002	broad.mit.edu	37	11	61121274	61121274	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:61121274G>A	uc001nrf.3	-	2	551	c.375C>T	c.(373-375)GTC>GTT	p.V125V	CYBASC3_uc010rlh.1_Silent_p.V142V|CYBASC3_uc001nrg.2_Silent_p.V125V|CYBASC3_uc009ynn.2_Intron|CYBASC3_uc001nrh.2_Silent_p.V125V|CYBASC3_uc001nri.2_RNA|CYBASC3_uc009yno.2_Silent_p.V125V	NM_001161452	NP_001154924	Q8NBI2	CYAC3_HUMAN	cytochrome b, ascorbate dependent 3 isoform 2	125	Cytochrome b561.|Helical; Name=4; (Potential).				electron transport chain|transport	integral to membrane|late endosome membrane|lysosomal membrane	metal ion binding|oxidoreductase activity				0						CGAAGAGGAAGACAGTGGTGA	0.547													11	34					0	0	1	0	0
INCENP	3619	broad.mit.edu	37	11	61897297	61897297	+	Missense_Mutation	SNP	C	A	A	rs139863209		TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:61897297C>A	uc001nsw.1	+	4	500	c.298C>A	c.(298-300)CGC>AGC	p.R100S	INCENP_uc009ynv.2_Missense_Mutation_p.R100S|INCENP_uc009ynw.1_Missense_Mutation_p.R100S|INCENP_uc001nsx.1_Missense_Mutation_p.R100S	NM_001040694	NP_001035784	Q9NQS7	INCE_HUMAN	inner centromere protein antigens 135/155kDa	100					chromosome segregation|cytokinesis|mitotic prometaphase	centromeric heterochromatin|condensed chromosome kinetochore|cytosol|microtubule|spindle	protein binding			lung(1)	1						GAGCTCCCGACGCCTCCGCAG	0.677													16	32					1.37285e-15	1.39001e-15	1	1	0
MTA2	9219	broad.mit.edu	37	11	62361448	62361448	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:62361448G>A	uc001ntq.1	-	18	2287	c.1906C>T	c.(1906-1908)CTG>TTG	p.L636L	TUT1_uc001nto.2_5'Flank|MTA2_uc010rlx.1_Silent_p.L463L	NM_004739	NP_004730	O94776	MTA2_HUMAN	metastasis-associated protein 2	636					chromatin assembly or disassembly	NuRD complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TTCACCTTCAGGGGCAAGTTG	0.597											OREG0021027	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	86					0	0	1	0	0
SLC22A6	9356	broad.mit.edu	37	11	62746982	62746982	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:62746982C>T	uc001nwk.2	-	8	1646	c.1339G>A	c.(1339-1341)GAA>AAA	p.E447K	SLC22A6_uc001nwl.2_Missense_Mutation_p.E447K|SLC22A6_uc001nwj.2_Missense_Mutation_p.E447K|SLC22A6_uc001nwm.2_Missense_Mutation_p.E447K	NM_004790	NP_004781	Q4U2R8	S22A6_HUMAN	solute carrier family 22 member 6 isoform a	447	Cytoplasmic (Potential).				alpha-ketoglutarate transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|protein binding				0						GGATACAGTTCCCCAGTATAC	0.517													10	50					0	0	1	0	0
TM7SF2	7108	broad.mit.edu	37	11	64880878	64880878	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:64880878G>A	uc001oct.2	+	4	638	c.491G>A	c.(490-492)GGG>GAG	p.G164E	TM7SF2_uc010rny.1_Missense_Mutation_p.G48E|TM7SF2_uc001ocu.2_Missense_Mutation_p.G164E|TM7SF2_uc001ocv.2_Missense_Mutation_p.G185E|uc009yqb.1_5'Flank	NM_003273	NP_003264	O76062	ERG24_HUMAN	transmembrane 7 superfamily member 2	164					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to plasma membrane	delta14-sterol reductase activity			ovary(1)	1						GCACCTGGGGGGAACTCAGGT	0.582											OREG0021072	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	99					0	0	1	0	0
SSH3	54961	broad.mit.edu	37	11	67075647	67075647	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:67075647C>T	uc001okj.2	+	9	1066	c.888C>T	c.(886-888)ATC>ATT	p.I296I	SSH3_uc001okk.2_RNA|SSH3_uc001okl.2_Silent_p.I150I	NM_017857	NP_060327	Q8TE77	SSH3_HUMAN	slingshot homolog 3	296					regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton|nucleus	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			GCCTGCAGATCCGCCAGGCTC	0.652													10	56					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70332853	70332854	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:70332853_70332854GG>AA	uc001oqc.2	-	21	3622_3623	c.3544_3545CC>TT	c.(3544-3546)CCC>TTC	p.P1182F	SHANK2_uc010rqn.1_Missense_Mutation_p.P594F|SHANK2_uc001opz.2_Missense_Mutation_p.P587F|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	803					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			GCTGCTCTCGGGCCCCTGGGCT	0.693													13	31					0	0	1	0	0
C11orf82	220042	broad.mit.edu	37	11	82644584	82644584	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:82644584C>T	uc001ozt.2	+	6	2448	c.2204C>T	c.(2203-2205)TCC>TTC	p.S735F	C11orf82_uc010rsr.1_Missense_Mutation_p.S434F|C11orf82_uc010rss.1_Missense_Mutation_p.S434F|C11orf82_uc009yvd.2_Intron	NM_145018	NP_659455	Q8IXT1	NOXIN_HUMAN	nitric oxide-inducible gene protein	735					apoptosis|cell cycle arrest	cytoplasm|nucleus				ovary(2)	2						CAAAAATTATCCTTGCAAAGC	0.368													30	81					0	0	1	0	0
MMP27	64066	broad.mit.edu	37	11	102567566	102567566	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:102567566C>T	uc001phd.1	-	5	643	c.620G>A	c.(619-621)GGA>GAA	p.G207E		NM_022122	NP_071405	Q9H306	MMP27_HUMAN	matrix metalloproteinase 27 precursor	207					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(8;0.000843)|all_epithelial(12;0.00362)|Lung NSC(15;0.21)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0509)|Lung(13;0.0696)|LUSC - Lung squamous cell carcinoma(19;0.13)|all cancers(10;0.176)	BRCA - Breast invasive adenocarcinoma(274;0.0151)		CAAGTTGAATCCTTGATAATA	0.403													6	36					0	0	1	0	0
CASP5	838	broad.mit.edu	37	11	104868115	104868115	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:104868115G>A	uc010rva.1	-	8	1233	c.1201C>T	c.(1201-1203)CGG>TGG	p.R401W	CASP5_uc010ruz.1_Missense_Mutation_p.R414W|CASP5_uc010rvb.1_Missense_Mutation_p.R343W|CASP5_uc010rvc.1_Missense_Mutation_p.R259W|CASP5_uc009yxh.2_Missense_Mutation_p.R183W|CASP5_uc010rvd.1_Missense_Mutation_p.R183W	NM_004347	NP_004338	P51878	CASP5_HUMAN	caspase 5 isoform a precursor	401					apoptosis|cellular response to mechanical stimulus|proteolysis|regulation of apoptosis	intracellular	cysteine-type endopeptidase activity|protein binding			ovary(2)|lung(1)	3		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000943)|Epithelial(105;0.0104)|all cancers(92;0.042)		CTTACCTTCCGAAATATTTCC	0.388													16	66					0	0	1	0	0
ANKK1	255239	broad.mit.edu	37	11	113270413	113270413	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:113270413G>A	uc001pny.2	+	8	1816	c.1722G>A	c.(1720-1722)CTG>CTA	p.L574L		NM_178510	NP_848605	Q8NFD2	ANKK1_HUMAN	ankyrin repeat and kinase domain containing 1	574	ANK 7.						ATP binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|ovary(1)|breast(1)	8		all_cancers(61;1.53e-11)|all_epithelial(67;3e-06)|Melanoma(852;4.04e-05)|all_hematologic(158;0.000315)|Acute lymphoblastic leukemia(157;0.000966)|Breast(348;0.0461)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Prostate(24;0.194)		BRCA - Breast invasive adenocarcinoma(274;4.82e-06)|Epithelial(105;5.41e-05)|all cancers(92;0.000442)|OV - Ovarian serous cystadenocarcinoma(223;0.238)		GCAAATACCTGATCTGCAAGA	0.627													3	5					0	0	1	0	0
RNF214	257160	broad.mit.edu	37	11	117152097	117152097	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:117152097C>T	uc001pqt.2	+	9	1258	c.1213C>T	c.(1213-1215)CGG>TGG	p.R405W	RNF214_uc001pqu.2_Missense_Mutation_p.R405W|RNF214_uc010rxf.1_Missense_Mutation_p.R250W	NM_207343	NP_997226	Q8ND24	RN214_HUMAN	ring finger protein 214	405							zinc ion binding				0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.88e-05)|Epithelial(105;0.000397)|all cancers(92;0.00258)		GAATGGAGTTCGGATAATGAA	0.423													11	31					0	0	1	0	0
NLRX1	79671	broad.mit.edu	37	11	119043650	119043650	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:119043650C>T	uc001pvu.2	+	4	396	c.181C>T	c.(181-183)CCC>TCC	p.P61S	NLRX1_uc010rzc.1_5'UTR|NLRX1_uc001pvv.2_Missense_Mutation_p.P61S|NLRX1_uc001pvw.2_Missense_Mutation_p.P61S|NLRX1_uc001pvx.2_Missense_Mutation_p.P61S	NM_024618	NP_078894	Q86UT6	NLRX1_HUMAN	NLR family member X1 isoform 1	61					innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production	mitochondrial outer membrane	ATP binding			ovary(1)|skin(1)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		AGATAGCGCTCCCCCACCCGG	0.637													17	77					0	0	1	0	0
USP2	9099	broad.mit.edu	37	11	119244171	119244171	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:119244171G>A	uc001pwm.3	-	2	315	c.20C>T	c.(19-21)ACC>ATC	p.T7I	USP2_uc001pwn.3_Intron	NM_004205	NP_004196	O75604	UBP2_HUMAN	ubiquitin specific peptidase 2 isoform a	7	Necessary for interaction with MDM4.				cell cycle|muscle organ development|negative regulation of transcription from RNA polymerase II promoter|positive regulation of mitotic cell cycle|protein deubiquitination|protein stabilization|ubiquitin-dependent protein catabolic process	nucleus|perinuclear region of cytoplasm	cyclin binding|cysteine-type endopeptidase activity|metal ion binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity			ovary(2)|urinary_tract(1)|skin(1)	4		all_hematologic(192;4.65e-05)|Breast(348;0.0101)|all_neural(223;0.0218)|Medulloblastoma(222;0.0425)|Renal(330;0.157)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.000513)|Colorectal(284;0.0116)|Lung(307;0.0853)|LUSC - Lung squamous cell carcinoma(976;0.0889)		GCGCTTCAGGGTGGAGGAGAG	0.602													4	19					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121500244	121500244	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:121500244C>T	uc001pxx.2	+	48	6697	c.6617C>T	c.(6616-6618)TCA>TTA	p.S2206L	SORL1_uc010rzp.1_Missense_Mutation_p.S1052L|SORL1_uc010rzq.1_Missense_Mutation_p.S821L	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	2206	Cytoplasmic (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		ACTGGATTTTCAGATGACGTC	0.398													18	64					0	0	1	0	0
OR6T1	219874	broad.mit.edu	37	11	123814281	123814281	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:123814281C>T	uc010sab.1	-	1	265	c.265G>A	c.(265-267)GAT>AAT	p.D89N		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		ATGGTGTGATCCCCCGTGAGG	0.502													10	65					0	0	1	0	0
CDON	50937	broad.mit.edu	37	11	125867302	125867302	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:125867302G>A	uc009zbw.2	-	12	2290	c.2162C>T	c.(2161-2163)CCA>CTA	p.P721L	CDON_uc001qdb.3_Missense_Mutation_p.P98L|CDON_uc001qdc.3_Missense_Mutation_p.P721L	NM_016952	NP_058648	Q4KMG0	CDON_HUMAN	surface glycoprotein, Ig superfamily member	721	Fibronectin type-III 2.|Extracellular (Potential).				cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|skin(2)|breast(1)	6	all_hematologic(175;0.177)	Breast(109;0.00157)|Lung NSC(97;0.0127)|all_lung(97;0.0133)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.51e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0604)		TGGTGCCTCTGGAACTAAACA	0.438													4	16					0	0	1	0	0
NFRKB	4798	broad.mit.edu	37	11	129739650	129739650	+	Silent	SNP	G	A	A	rs2229652		TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:129739650G>A	uc001qfi.2	-	24	3471	c.3270C>T	c.(3268-3270)ATC>ATT	p.I1090I	NFRKB_uc001qfg.2_Silent_p.I1115I|NFRKB_uc001qfh.2_Silent_p.I1113I|NFRKB_uc010sbw.1_Silent_p.I1100I|NFRKB_uc009zcr.2_Silent_p.I376I	NM_001143835	NP_001137307	Q6P4R8	NFRKB_HUMAN	nuclear factor related to kappaB binding protein	1090					DNA recombination|DNA repair|inflammatory response|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Ino80 complex	DNA binding|protease binding			ovary(3)	3	all_hematologic(175;0.0537)	Breast(109;0.00526)|Lung NSC(97;0.00901)|all_lung(97;0.018)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0167)|Lung(977;0.171)|LUSC - Lung squamous cell carcinoma(976;0.184)		GTCCCTGCACGATGCGGATCG	0.592													24	88					0	0	1	0	0
GLB1L2	89944	broad.mit.edu	37	11	134217268	134217268	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr11:134217268T>C	uc001qhp.2	+	5	687	c.499T>C	c.(499-501)TTC>CTC	p.F167L	GLB1L2_uc009zdg.1_RNA	NM_138342	NP_612351	Q8IW92	GLBL2_HUMAN	galactosidase, beta 1-like 2 precursor	167					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|pancreas(1)|skin(1)	3	all_hematologic(175;0.127)	all_cancers(12;2.85e-18)|all_epithelial(12;1.21e-12)|all_lung(97;0.000276)|Lung NSC(97;0.000518)|Breast(109;0.00122)|Medulloblastoma(222;0.0399)|all_neural(223;0.0412)|Esophageal squamous(93;0.0844)		Epithelial(10;1.37e-11)|all cancers(11;2.2e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000885)|Lung(977;0.223)		TTACAAGGGCTTCACCGAAGC	0.507													53	252					0	0	1	0	0
Unknown	0	broad.mit.edu	37	12	92000	92000	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:92000A>T	uc010sdi.1	-	2	338	c.310T>A	c.(310-312)TTG>ATG	p.L104M	uc010sdj.1_RNA					SubName: Full=DEAD/H box polypeptide 11 like 11;																		GGTCCTGGCAACACTCTGGAC	0.572													3	7					0	0	1	0	0
AKAP3	10566	broad.mit.edu	37	12	4737262	4737262	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:4737262C>T	uc001qnb.3	-	4	1035	c.806G>A	c.(805-807)CGA>CAA	p.R269Q		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	269					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						TTCCTGCCCTCGAAACCTCTT	0.443													27	59					0	0	1	0	0
KCNA5	3741	broad.mit.edu	37	12	5154324	5154324	+	Missense_Mutation	SNP	C	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:5154324C>A	uc001qni.2	+	1	1240	c.1011C>A	c.(1009-1011)TTC>TTA	p.F337L		NM_002234	NP_002225	P22460	KCNA5_HUMAN	potassium voltage-gated channel, shaker-related	337	Helical; Name=Segment S2; (Potential).					Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(2)|breast(2)	4						GGTTCACCTTCGAGCTGCTCG	0.622													21	118					2.4624e-09	2.48283e-09	1	1	0
VWF	7450	broad.mit.edu	37	12	6094739	6094739	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:6094739G>A	uc001qnn.1	-	39	7141	c.6891C>T	c.(6889-6891)CCC>CCT	p.P2297P	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2297	VWFC 1.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CTTTGGCCGTGGGGCAGGGCT	0.652													7	17					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6138607	6138607	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:6138607C>T	uc001qnn.1	-	22	3118	c.2868G>A	c.(2866-2868)GTG>GTA	p.V956V	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	956	VWFD 3.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	GGCCAGACTCCACCACCTCAA	0.567													31	59					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7649537	7649537	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:7649537C>T	uc001qsz.3	-	5	1099	c.971G>A	c.(970-972)GGA>GAA	p.G324E	CD163_uc001qta.3_Missense_Mutation_p.G324E|CD163_uc009zfw.2_Missense_Mutation_p.G324E	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	324	SRCR 3.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						GTGTCCAAATCCCTTACTGGC	0.502													14	48					0	0	1	0	0
TAS2R14	50840	broad.mit.edu	37	12	11091687	11091687	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:11091687C>T	uc010shi.1	-	1	120	c.120G>A	c.(118-120)AAG>AAA	p.K40K	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_023922	NP_076411	Q9NYV8	T2R14_HUMAN	taste receptor, type 2, member 14	40	Cytoplasmic (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste		bitter taste receptor activity				0						CCGAAGAGATCTTTCTTCCCT	0.393													23	54					0	0	1	0	0
PRB2	653247	broad.mit.edu	37	12	11546416	11546416	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:11546416C>T	uc010shk.1	-	3	631	c.596G>A	c.(595-597)GGA>GAA	p.G199E		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGTGGCTTTCCTGGAGGAGG	0.597													63	432					0	0	1	0	0
PRB2	653247	broad.mit.edu	37	12	11546576	11546576	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:11546576C>T	uc010shk.1	-	3	471	c.436G>A	c.(436-438)GGA>AGA	p.G146R		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGTTGCCTCCTTGTGGGGGT	0.582													82	560					0	0	1	0	0
C12orf36	283422	broad.mit.edu	37	12	13529218	13529218	+	Missense_Mutation	SNP	C	T	T	rs149562504	byFrequency	TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:13529218C>T	uc001rbs.1	-	2	340	c.122G>A	c.(121-123)CGA>CAA	p.R41Q		NM_182558	NP_872364			hypothetical protein LOC283422												0				BRCA - Breast invasive adenocarcinoma(232;0.198)		gtcagcccttcgtttcagagg	0.05													9	45					0	0	1	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18691153	18691153	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:18691153C>T	uc001rdt.2	+	24	3380	c.3264C>T	c.(3262-3264)AAC>AAT	p.N1088N	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Silent_p.N1129N|PIK3C2G_uc010sic.1_Silent_p.N907N	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1088	PI3K/PI4K.				cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				GTGGGAAAAACCCACAGCATT	0.403													26	77					0	0	1	0	0
PLCZ1	89869	broad.mit.edu	37	12	18854502	18854502	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:18854502C>T	uc010sid.1	-	9	1141	c.950G>A	c.(949-951)GGA>GAA	p.G317E	PLCZ1_uc001rdv.3_Missense_Mutation_p.G213E|PLCZ1_uc001rdw.3_Missense_Mutation_p.G58E|PLCZ1_uc001rdu.1_Missense_Mutation_p.G99E|PLCZ1_uc009zil.1_RNA	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	317					intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					TTGATTGTCTCCTAAAACAGA	0.279													30	70					0	0	1	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891960	18891960	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:18891960G>A	uc001rdy.2	+	1	916	c.758G>A	c.(757-759)AGA>AAA	p.R253K	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	253					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				GAAGCCCTGAGAAAAATTCTA	0.423													24	67					0	0	1	0	0
TM7SF3	51768	broad.mit.edu	37	12	27127142	27127142	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:27127142A>G	uc010sjl.1	-	12	1707	c.1469T>C	c.(1468-1470)GTA>GCA	p.V490A		NM_016551	NP_057635	Q9NS93	TM7S3_HUMAN	transmembrane 7 superfamily member 3 precursor	490	Helical; (Potential).					integral to membrane|plasma membrane				upper_aerodigestive_tract(2)	2	Colorectal(261;0.0847)					CATGCCCCATACTGCCAGGAT	0.393													22	43					0	0	1	0	0
MRPS35	60488	broad.mit.edu	37	12	27890496	27890496	+	Nonsense_Mutation	SNP	C	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:27890496C>G	uc001rih.2	+	7	705	c.657C>G	c.(655-657)TAC>TAG	p.Y219*	MRPS35_uc001rii.2_Missense_Mutation_p.R183G	NM_021821	NP_068593	P82673	RT35_HUMAN	mitochondrial ribosomal protein S35 precursor	219					DNA damage response, detection of DNA damage	mitochondrial small ribosomal subunit					0	Lung SC(9;0.0873)					GGCAGAATTACGATTATGCAG	0.323													33	77					0	0	1	0	0
CNTN1	1272	broad.mit.edu	37	12	41337930	41337930	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:41337930C>T	uc001rmm.1	+	14	1754	c.1641C>T	c.(1639-1641)ATC>ATT	p.I547I	CNTN1_uc009zjy.1_Silent_p.I547I|CNTN1_uc001rmn.1_Silent_p.I536I|CNTN1_uc001rmo.2_Silent_p.I547I	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	547	Ig-like C2-type 6.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				GCTATGTGATCGATTTTAACA	0.408													14	59					0	0	1	0	0
PDZRN4	29951	broad.mit.edu	37	12	41966991	41966991	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:41966991G>A	uc010skn.1	+	10	1881	c.1813G>A	c.(1813-1815)GCT>ACT	p.A605T	PDZRN4_uc001rmq.3_Missense_Mutation_p.A546T|PDZRN4_uc009zjz.2_Missense_Mutation_p.A544T|PDZRN4_uc001rmr.2_Missense_Mutation_p.A431T	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	804							ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				AGGTTGTAGCGCTGAAAGCAA	0.517													37	133					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43860573	43860573	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:43860573G>A	uc010skx.1	-	9	1249	c.1249C>T	c.(1249-1251)CCT>TCT	p.P417S		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	417	Peptidase M12B.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TTACATCTAGGATTATCATCA	0.318													24	64					0	0	1	0	0
SLC38A4	55089	broad.mit.edu	37	12	47181798	47181798	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:47181798G>A	uc001rpi.2	-	5	626	c.227C>T	c.(226-228)TCC>TTC	p.S76F	SLC38A4_uc001rpj.2_Missense_Mutation_p.S76F|SLC38A4_uc009zkl.2_Missense_Mutation_p.S76F	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	76	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					CATTCCAAAGGAAGTGGTTCC	0.433													20	40					0	0	1	0	0
SENP1	29843	broad.mit.edu	37	12	48482738	48482738	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:48482738G>A	uc001rqx.2	-	5	672	c.226C>T	c.(226-228)CCT>TCT	p.P76S	SENP1_uc001rqw.2_Missense_Mutation_p.P76S|SENP1_uc001rqy.2_5'UTR|SENP1_uc001rqz.2_5'UTR|SENP1_uc009zkx.2_Missense_Mutation_p.P76S	NM_014554	NP_055369	Q9P0U3	SENP1_HUMAN	sentrin/SUMO-specific protease 1	76	Ser-rich.				activation of caspase activity|induction of apoptosis by extracellular signals|protein desumoylation|proteolysis	cytoplasm|nucleus	endopeptidase activity|SUMO-specific protease activity			pancreas(2)|lung(1)	3		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)				TCTGAGGAAGGATTATCTAAA	0.378													6	9					0	0	1	0	0
MLL2	8085	broad.mit.edu	37	12	49424413	49424413	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:49424413G>A	uc001rta.3	-	41	13810	c.13810C>T	c.(13810-13812)CCT>TCT	p.P4604S		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	4604					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						TAGTAGTCAGGGCCAGTGGGC	0.527			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			5	28					0	0	1	0	0
GALNT6	11226	broad.mit.edu	37	12	51759245	51759245	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:51759245C>T	uc001ryk.2	-	4	1008	c.783G>A	c.(781-783)CAG>CAA	p.Q261Q	GALNT6_uc009zma.1_RNA|GALNT6_uc001ryl.1_Silent_p.Q261Q	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	261	Catalytic subdomain A.|Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						GCACCTCCGCCTGTGCCACGC	0.672													5	59					0	0	1	0	0
KRT5	3852	broad.mit.edu	37	12	52910459	52910459	+	Silent	SNP	G	A	A	rs60062350		TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:52910459G>A	uc001san.2	-	7	1564	c.1401C>T	c.(1399-1401)ATC>ATT	p.I467I	KRT5_uc009zmh.2_Silent_p.I467I	NM_000424	NP_000415	P13647	K2C5_HUMAN	keratin 5	467	Rod.|Coil 2.		I -> T (in DM-EBS).		epidermis development|hemidesmosome assembly	cytosol|keratin filament	protein binding|structural constituent of cytoskeleton				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		GGTAAGTGGCGATCTCCACGT	0.587													61	139					0	0	1	0	0
KRT78	196374	broad.mit.edu	37	12	53242587	53242587	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:53242587G>A	uc001sbc.1	-	1	192	c.128C>T	c.(127-129)TCC>TTC	p.S43F		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	43	Head.|Gly-rich.					keratin filament	protein binding|structural molecule activity			ovary(2)	2						CCCCCCAAAGGAATTAAGGCT	0.672													10	19					0	0	1	0	0
TENC1	23371	broad.mit.edu	37	12	53457582	53457582	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:53457582C>T	uc001sbp.2	+	29	4281	c.4146C>T	c.(4144-4146)CAC>CAT	p.H1382H	TENC1_uc001sbl.2_Silent_p.H1258H|TENC1_uc001sbn.2_Silent_p.H1392H|TENC1_uc001sbq.2_Silent_p.H780H|TENC1_uc001sbr.2_RNA|TENC1_uc009zmr.2_Silent_p.H875H|TENC1_uc001sbs.2_Silent_p.H201H	NM_170754	NP_736610	Q63HR2	TENC1_HUMAN	tensin like C1 domain containing phosphatase	1382					intracellular signal transduction|negative regulation of cell proliferation	focal adhesion	metal ion binding|phosphoprotein phosphatase activity|protein binding			ovary(1)|pancreas(1)	2						ATGTGTGTCACCTCTTTGCAG	0.532													67	161					0	0	1	0	0
KIAA0748	9840	broad.mit.edu	37	12	55361005	55361005	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:55361005C>T	uc001sgn.3	-	5	382	c.272G>A	c.(271-273)GGG>GAG	p.G91E	KIAA0748_uc001sgl.3_5'UTR|KIAA0748_uc001sgm.3_5'UTR|KIAA0748_uc010spb.1_5'UTR|KIAA0748_uc010spc.1_5'UTR|KIAA0748_uc010spd.1_Missense_Mutation_p.G91E|KIAA0748_uc001sgo.3_RNA	NM_001098815	NP_001092285	A2RU30	K0748_HUMAN	hypothetical protein LOC9840	91										ovary(1)|central_nervous_system(1)	2						AAAGCTGGTCCCATGGCTGCA	0.483													5	21					0	0	1	0	0
OR6C3	254786	broad.mit.edu	37	12	55725800	55725800	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:55725800G>A	uc010spj.1	+	1	316	c.316G>A	c.(316-318)GTG>ATG	p.V106M		NM_054104	NP_473445	Q9NZP0	OR6C3_HUMAN	olfactory receptor, family 6, subfamily C,	106	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTTCATGGGGGTGACTGAATT	0.433													59	134					0	0	1	0	0
TIMELESS	8914	broad.mit.edu	37	12	56823910	56823910	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:56823910G>A	uc001slf.2	-	10	1233	c.1065C>T	c.(1063-1065)AAC>AAT	p.N355N	TIMELESS_uc001slg.2_Silent_p.N354N	NM_003920	NP_003911	Q9UNS1	TIM_HUMAN	timeless homolog	355					cell division|circadian rhythm|detection of abiotic stimulus|mitosis|morphogenesis of an epithelium|negative regulation of transcription, DNA-dependent|regulation of S phase|response to DNA damage stimulus|transcription, DNA-dependent	nuclear chromatin				ovary(5)|breast(2)|pancreas(1)	8						CCATGAGCCGGTTGTAACAGT	0.517													14	35					0	0	1	0	0
LRP1	4035	broad.mit.edu	37	12	57572190	57572190	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:57572190G>A	uc001snd.2	+	27	4876	c.4410G>A	c.(4408-4410)GAG>GAA	p.E1470E		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1470	Extracellular (Potential).|LDL-receptor class B 11.				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GCCACATGGAGGTGCTTCGGG	0.577													15	45					0	0	1	0	0
GLI1	2735	broad.mit.edu	37	12	57861986	57861986	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:57861986G>A	uc001snx.2	+	10	1365	c.1287G>A	c.(1285-1287)CTG>CTA	p.L429L	GLI1_uc009zpq.2_Silent_p.L301L	NM_005269	NP_005260	P08151	GLI1_HUMAN	GLI family zinc finger 1 isoform 1	429					epidermal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|osteoblast differentiation|positive regulation of DNA replication|positive regulation of smoothened signaling pathway|positive regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	transcription regulatory region DNA binding|zinc ion binding			skin(4)|ovary(4)|breast(3)|central_nervous_system(1)|urinary_tract(1)|kidney(1)|pancreas(1)	15			GBM - Glioblastoma multiforme(3;3.99e-32)			AAAGCAGACTGACTGTGCCAG	0.612													18	21					0	0	1	0	0
DTX3	196403	broad.mit.edu	37	12	58002312	58002312	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:58002312C>T	uc001sow.1	+	6	1097	c.760C>T	c.(760-762)CCA>TCA	p.P254S	DTX3_uc001sox.1_Missense_Mutation_p.P247S|DTX3_uc001soy.1_Missense_Mutation_p.P247S|GEFT_uc009zpy.2_5'Flank|GEFT_uc001soz.1_5'Flank|GEFT_uc001spb.2_5'Flank|GEFT_uc001spa.2_5'Flank	NM_178502	NP_848597	Q8N9I9	DTX3_HUMAN	deltex homolog 3	254					Notch signaling pathway	cytoplasm	zinc ion binding			breast(1)|central_nervous_system(1)	2	Melanoma(17;0.122)					GGCTGAACACCCAAACCCAGG	0.612													11	55					0	0	1	0	0
CPM	1368	broad.mit.edu	37	12	69252815	69252815	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:69252815G>A	uc001sup.2	-	8	1038	c.977C>T	c.(976-978)CCA>CTA	p.P326L	CPM_uc001sur.2_Missense_Mutation_p.P326L|CPM_uc001suq.2_Missense_Mutation_p.P326L	NM_198320	NP_938079	P14384	CBPM_HUMAN	carboxypeptidase M precursor	326					anatomical structure morphogenesis|proteolysis	anchored to membrane|cytoplasm|nucleus|plasma membrane	metallocarboxypeptidase activity|zinc ion binding				0	all_epithelial(5;1.09e-35)|Lung NSC(4;1.47e-33)|all_lung(4;1.02e-31)|Breast(13;1.59e-06)		all cancers(2;2.69e-50)|GBM - Glioblastoma multiforme(2;7.34e-41)|BRCA - Breast invasive adenocarcinoma(5;5.38e-10)|Lung(24;4.61e-05)|LUAD - Lung adenocarcinoma(15;0.000376)|STAD - Stomach adenocarcinoma(21;0.00372)|Kidney(9;0.143)			ATTGGGTAATGGATTTCCATT	0.294													34	89					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70963633	70963633	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:70963633G>C	uc001swb.3	-	12	2832	c.2802C>G	c.(2800-2802)GAC>GAG	p.D934E	PTPRB_uc010sto.1_Missense_Mutation_p.D934E|PTPRB_uc010stp.1_Missense_Mutation_p.D844E|PTPRB_uc001swc.3_Missense_Mutation_p.D1152E|PTPRB_uc001swa.3_Missense_Mutation_p.D1064E|PTPRB_uc001swd.3_Missense_Mutation_p.D1151E|PTPRB_uc009zrr.1_Missense_Mutation_p.D1031E	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	934	Fibronectin type-III 11.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			AGGAATCAACGTCTCCCCCAC	0.478													23	41					0	0	1	0	0
TPH2	121278	broad.mit.edu	37	12	72338095	72338095	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:72338095C>T	uc009zrw.1	+	3	418	c.277C>T	c.(277-279)CAT>TAT	p.H93Y	TPH2_uc001swy.2_Missense_Mutation_p.H3Y	NM_173353	NP_775489	Q8IWU9	TPH2_HUMAN	tryptophan hydroxylase 2	93	ACT.				aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity			ovary(2)|central_nervous_system(1)|skin(1)	4					L-Tryptophan(DB00150)	CAACATGGTTCATATTGAATC	0.408													42	96					0	0	1	0	0
MIR1252	100302136	broad.mit.edu	37	12	79813052	79813052	+	RNA	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:79813052G>A	hsa-mir-1252|MI0006434	+			c.16G>A			SYT1_uc001sys.2_Intron|SYT1_uc001syt.2_Intron|SYT1_uc001syu.2_Intron|SYT1_uc001syv.2_Intron																	0						GAAGGAAATTGAATTCATTTA	0.308													6	29					0	0	1	0	0
ATP2A2	488	broad.mit.edu	37	12	110771024	110771024	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:110771024A>G	uc001tqk.3	+	10	1786	c.1223A>G	c.(1222-1224)GAT>GGT	p.D408G	ATP2A2_uc001tql.3_Missense_Mutation_p.D408G|ATP2A2_uc010sxy.1_Missense_Mutation_p.D381G	NM_170665	NP_733765	P16615	AT2A2_HUMAN	ATPase, Ca++ transporting, slow twitch 2 isoform	408	Cytoplasmic (By similarity).				ATP biosynthetic process|cell adhesion|epidermis development|platelet activation|sarcoplasmic reticulum calcium ion transport	integral to plasma membrane|microsome|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|protein C-terminus binding|S100 alpha binding			ovary(3)|skin(1)	4						CACCAGTATGATGGTCTGGTA	0.418													80	175					0	0	1	0	0
RNF10	9921	broad.mit.edu	37	12	121004775	121004775	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:121004775C>T	uc001typ.3	+	13	2516	c.2033C>T	c.(2032-2034)TCC>TTC	p.S678F	RNF10_uc010szk.1_RNA|RNF10_uc001tyq.3_Missense_Mutation_p.S589F	NM_014868	NP_055683	Q8N5U6	RNF10_HUMAN	ring finger protein 10	678					negative regulation of Schwann cell proliferation|positive regulation of myelination|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription regulatory region DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AGTCCAGGTTCCCATGCAGGT	0.498													28	85					0	0	1	0	0
SCARB1	949	broad.mit.edu	37	12	125302130	125302130	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:125302130G>A	uc001ugo.3	-	2	503	c.250C>T	c.(250-252)CCG>TCG	p.P84S	SCARB1_uc001ugn.3_Missense_Mutation_p.P84S|SCARB1_uc001ugm.3_Missense_Mutation_p.P84S|SCARB1_uc010tbd.1_Missense_Mutation_p.P84S|SCARB1_uc010tbe.1_Missense_Mutation_p.P43S|SCARB1_uc001ugp.3_Missense_Mutation_p.P84S	NM_005505	NP_005496	Q8WTV0	SCRB1_HUMAN	scavenger receptor class B, member 1 isoform 1	84	Extracellular (Potential).				adhesion to symbiont|cell adhesion|cholesterol efflux|cholesterol homeostasis|cholesterol import|detection of lipopolysaccharide|high-density lipoprotein particle clearance|high-density lipoprotein particle remodeling|lipopolysaccharide transport|lipoprotein metabolic process|positive regulation of cholesterol storage|positive regulation of endothelial cell migration|positive regulation of nitric-oxide synthase activity|recognition of apoptotic cell|reverse cholesterol transport|triglyceride homeostasis|wound healing	caveola	1-phosphatidylinositol binding|apolipoprotein A-I binding|high-density lipoprotein particle receptor activity|lipopolysaccharide receptor activity|low-density lipoprotein particle binding|phosphatidylserine binding|transporter activity			kidney(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000116)|Epithelial(86;0.000415)|all cancers(50;0.00395)	Phosphatidylserine(DB00144)	CGCACCTGCGGCTTCTCGCCC	0.617													21	54					0	0	1	0	0
RIMBP2	23504	broad.mit.edu	37	12	130929789	130929789	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:130929789C>T	uc001uil.2	-	7	720	c.556G>A	c.(556-558)GAG>AAG	p.E186K	RIMBP2_uc001uim.2_Missense_Mutation_p.E94K|RIMBP2_uc001uin.1_5'Flank	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	186	SH3 1.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		TCGGGGTTCTCGTTCGGTCCA	0.542													28	62					0	0	1	0	0
P2RX2	22953	broad.mit.edu	37	12	133196278	133196278	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr12:133196278T>A	uc001ukj.1	+	3	323	c.323T>A	c.(322-324)TTC>TAC	p.F108Y	P2RX2_uc001uki.1_Missense_Mutation_p.F108Y|P2RX2_uc001ukk.1_Missense_Mutation_p.F108Y|P2RX2_uc001ukl.1_Intron|P2RX2_uc001ukm.1_Intron|P2RX2_uc001ukn.1_Intron|P2RX2_uc009zyt.1_Missense_Mutation_p.F108Y|P2RX2_uc001uko.1_Intron	NM_170682	NP_733782	Q9UBL9	P2RX2_HUMAN	purinergic receptor P2X2 isoform A	108	Extracellular (Potential).				positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling|protein homooligomerization	integral to membrane	ATP binding|extracellular ATP-gated cation channel activity|identical protein binding|purinergic nucleotide receptor activity				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0767)		OV - Ovarian serous cystadenocarcinoma(86;2.32e-08)|Epithelial(86;8.62e-08)|all cancers(50;4.5e-06)		GGCAGCGTGTTCAGCATCATC	0.667													5	15					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19413025	19413025	+	RNA	SNP	A	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr13:19413025A>G	uc010tcj.1	-	1		c.33085T>C				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						AATAACCTGCACATCCATGCA	0.299													4	33					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19413033	19413033	+	RNA	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr13:19413033G>A	uc010tcj.1	-	1		c.33077C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GCACATCCATGCACTAAAAAG	0.294													4	30					0	0	1	0	0
TPTE2	93492	broad.mit.edu	37	13	20039425	20039425	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr13:20039425C>T	uc001umd.2	-	10	857	c.646G>A	c.(646-648)GGA>AGA	p.G216R	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Missense_Mutation_p.G105R|TPTE2_uc001ume.2_Missense_Mutation_p.G139R|TPTE2_uc009zzm.2_5'UTR|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	216	Phosphatase tensin-type.					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		AGGTCAAATCCATCCCTTGTG	0.308													27	165					0	0	1	0	0
LOC374491	374491	broad.mit.edu	37	13	25144862	25144862	+	RNA	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr13:25144862G>A	uc001upm.2	+	4		c.403G>A								Homo sapiens mRNA; cDNA DKFZp434J0717 (from clone DKFZp434J0717).												0						GCCAGATAATGGAGCAGTGGT	0.408													6	43					0	0	1	0	0
TRPC4	7223	broad.mit.edu	37	13	38211309	38211309	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr13:38211309G>A	uc001uws.2	-	11	2900	c.2665C>T	c.(2665-2667)CGA>TGA	p.R889*	TRPC4_uc010abv.2_Nonsense_Mutation_p.R469*|TRPC4_uc001uwt.2_Nonsense_Mutation_p.R805*|TRPC4_uc010tey.1_Nonsense_Mutation_p.R748*|TRPC4_uc010abw.2_Nonsense_Mutation_p.R716*|TRPC4_uc010abx.2_Nonsense_Mutation_p.R894*|TRPC4_uc010aby.2_Nonsense_Mutation_p.R740*	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	889	Binds to ITPR1, ITPR2 and ITPR3.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		GCTAATCCTCGAGATTCCAGT	0.463													15	58					0	0	1	0	0
TRPC4	7223	broad.mit.edu	37	13	38320340	38320340	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr13:38320340G>A	uc001uws.2	-	3	866	c.631C>T	c.(631-633)CTG>TTG	p.L211L	TRPC4_uc010abv.2_5'UTR|TRPC4_uc001uwt.2_Silent_p.L211L|TRPC4_uc010tey.1_Silent_p.L211L|TRPC4_uc010abw.2_Intron|TRPC4_uc010abx.2_Silent_p.L211L|TRPC4_uc010aby.2_Silent_p.L211L	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	211	Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		TCGCTTGACAGTGCAATGAGA	0.493													18	76					0	0	1	0	0
THSD1	55901	broad.mit.edu	37	13	52960200	52960200	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr13:52960200G>A	uc001vgo.2	-	4	1688	c.1143C>T	c.(1141-1143)TCC>TCT	p.S381S	THSD1_uc001vgp.2_Intron|THSD1_uc010tgz.1_Silent_p.S2S|THSD1_uc010aea.2_Intron	NM_018676	NP_061146	Q9NS62	THSD1_HUMAN	thrombospondin type I domain-containing 1	381	Extracellular (Potential).|TSP type-1.					extracellular region|integral to membrane|intracellular membrane-bounded organelle				ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		Breast(56;0.000207)|Lung NSC(96;0.00145)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.8e-08)		AGGCCTCCAAGGACATTCCAG	0.557													12	40					0	0	1	0	0
PCDH17	27253	broad.mit.edu	37	13	58208535	58208535	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr13:58208535G>A	uc001vhq.1	+	1	2747	c.1855G>A	c.(1855-1857)GAG>AAG	p.E619K	PCDH17_uc010aec.1_Missense_Mutation_p.E619K	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	619	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		CGACTTCGGCGAGAGCGGGCG	0.662													16	62					0	0	1	0	0
KLHL1	57626	broad.mit.edu	37	13	70514348	70514348	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr13:70514348C>T	uc001vip.2	-	4	1632	c.838G>A	c.(838-840)GAC>AAC	p.D280N	KLHL1_uc010thm.1_Missense_Mutation_p.D219N	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	280					actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		TCAATGGTGTCCTCTTTTAAT	0.383													8	25					0	0	1	0	0
TBC1D4	9882	broad.mit.edu	37	13	75898493	75898493	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr13:75898493G>A	uc001vjl.1	-	11	2425	c.2078C>T	c.(2077-2079)TCC>TTC	p.S693F	TBC1D4_uc010aer.2_Missense_Mutation_p.S693F|TBC1D4_uc010aes.2_Intron	NM_014832	NP_055647	O60343	TBCD4_HUMAN	TBC1 domain family, member 4	693	Ser-rich.					cytoplasm	Rab GTPase activator activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Prostate(6;0.014)|Breast(118;0.0982)		GBM - Glioblastoma multiforme(99;0.0116)		AAGACTGGAGGAAGAATTACT	0.413													13	63					0	0	1	0	0
SCEL	8796	broad.mit.edu	37	13	78192159	78192159	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr13:78192159T>A	uc001vki.2	+	27	1762	c.1592T>A	c.(1591-1593)ATT>AAT	p.I531N	SCEL_uc001vkj.2_Missense_Mutation_p.I511N|SCEL_uc010thx.1_Missense_Mutation_p.I489N	NM_144777	NP_659001	O95171	SCEL_HUMAN	sciellin isoform 1	531	15.|16 X approximate tandem repeats.				embryo development|keratinocyte differentiation	cornified envelope|cytoplasm|membrane	protein binding|zinc ion binding			ovary(4)|breast(1)	5		Acute lymphoblastic leukemia(28;0.0282)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0233)		GACAATCTTATTAAAGTGAAA	0.328													27	118					0	0	1	0	0
DZIP1	22873	broad.mit.edu	37	13	96242593	96242593	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr13:96242593G>A	uc001vmk.2	-	17	2635	c.1783C>T	c.(1783-1785)CGA>TGA	p.R595*	DZIP1_uc001vmi.2_5'Flank|DZIP1_uc001vmj.2_Nonsense_Mutation_p.R71*|DZIP1_uc001vml.2_Nonsense_Mutation_p.R576*	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	595					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			AGGAATTCTCGAATTTGATGA	0.368													31	103					0	0	1	0	0
SLC15A1	6564	broad.mit.edu	37	13	99378639	99378639	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr13:99378639G>A	uc001vno.2	-	3	163	c.86C>T	c.(85-87)TCC>TTC	p.S29F	SLC15A1_uc001vnp.1_5'UTR	NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	29	Extracellular (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	TCCATAGTAGGAAAATCTTTC	0.443													10	37					0	0	1	0	0
F10	2159	broad.mit.edu	37	13	113798367	113798367	+	Silent	SNP	C	T	T	rs137995645	by1000genomes	TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr13:113798367C>T	uc001vsx.2	+	6	762	c.705C>T	c.(703-705)ATC>ATT	p.I235I	F10_uc010agq.1_RNA|F10_uc001vsy.2_Silent_p.I235I|F10_uc001vsz.2_Silent_p.I235I	NM_000504	NP_000495	P00742	FA10_HUMAN	coagulation factor X preproprotein	235	Peptidase S1.				blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of cell migration|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen	calcium ion binding|phospholipid binding|protein binding|serine-type endopeptidase activity			pancreas(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.113)|all_lung(25;0.0364)|all_epithelial(44;0.0373)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0805)|Epithelial(84;0.231)		Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Enoxaparin(DB01225)|Heparin(DB01109)|Menadione(DB00170)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCACCAGGATCGTGGGAGGCC	0.622													11	65					0	0	1	0	0
OR4Q3	441669	broad.mit.edu	37	14	20216091	20216091	+	Missense_Mutation	SNP	T	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr14:20216091T>G	uc010tkt.1	+	1	505	c.505T>G	c.(505-507)TTC>GTC	p.F169V		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	169	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CCAGCTGCCTTTCTGTGGGCC	0.512													9	111					0	0	1	0	0
OR4Q3	441669	broad.mit.edu	37	14	20216495	20216495	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr14:20216495G>A	uc010tkt.1	+	1	909	c.909G>A	c.(907-909)AGG>AGA	p.R303R		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	303	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AGAAGCTGAGGATAAAACCAT	0.388													6	96					0	0	1	0	0
LRRC16B	90668	broad.mit.edu	37	14	24525909	24525909	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr14:24525909C>T	uc001wlj.2	+	12	1101	c.944C>T	c.(943-945)TCC>TTC	p.S315F		NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	315	LRR 3.									ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		ACTGCCATTTCCCCTCGAGGT	0.592													17	27					0	0	1	0	0
AKAP6	9472	broad.mit.edu	37	14	33014668	33014668	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr14:33014668G>A	uc001wrq.2	+	4	979	c.809G>A	c.(808-810)CGA>CAA	p.R270Q	AKAP6_uc010aml.2_Missense_Mutation_p.R267Q	NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	270					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		GAGCTTATCCGAAGTGTTGGT	0.468													20	112					0	0	1	0	0
RPL10L	140801	broad.mit.edu	37	14	47120418	47120418	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr14:47120418C>T	uc001wwg.2	-	1	611	c.522G>A	c.(520-522)ACG>ACA	p.T174T		NM_080746	NP_542784	Q96L21	RL10L_HUMAN	ribosomal protein L10-like protein	174					spermatogenesis|translation	cytosolic large ribosomal subunit|nucleus	structural constituent of ribosome			ovary(1)	1						CATTAAACTTCGTGAAGCCCC	0.507													34	91					0	0	1	0	0
ATL1	51062	broad.mit.edu	37	14	51094855	51094855	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr14:51094855G>A	uc001wyf.3	+	12	1467	c.1226G>A	c.(1225-1227)GGT>GAT	p.G409D	ATL1_uc001wyd.3_Missense_Mutation_p.G409D|ATL1_uc001wye.3_Missense_Mutation_p.G409D	NM_015915	NP_056999	Q8WXF7	ATLA1_HUMAN	atlastin GTPase 1 isoform a	409	Cytoplasmic.				axonogenesis|cell death|endoplasmic reticulum organization|protein homooligomerization	axon|endoplasmic reticulum membrane|Golgi cis cisterna|Golgi membrane|integral to membrane|microsome	GTP binding|GTPase activity|identical protein binding			skin(3)|central_nervous_system(1)	4						AAGAAGATGGGTGGGGAAGAA	0.438													14	77					0	0	1	0	0
SIX4	51804	broad.mit.edu	37	14	61187119	61187119	+	Missense_Mutation	SNP	C	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr14:61187119C>A	uc001xfc.2	-	2	908	c.908G>T	c.(907-909)GGA>GTA	p.G303V	SIX4_uc010app.1_Missense_Mutation_p.G295V	NM_017420	NP_059116	Q9UIU6	SIX4_HUMAN	sine oculis homeobox homolog 4	303						nucleus				breast(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0275)		ATCCTCATGTCCCTTGCTGGA	0.468													41	89					1.15183e-24	1.17439e-24	1	1	0
KCNH5	27133	broad.mit.edu	37	14	63269135	63269135	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr14:63269135G>A	uc001xfx.2	-	9	1785	c.1734C>T	c.(1732-1734)TAC>TAT	p.Y578Y	KCNH5_uc001xfy.2_Silent_p.Y578Y|KCNH5_uc001xfz.1_Silent_p.Y520Y	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	578	cNMP.|Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		CTCCAGCATGGTAAATGAGGT	0.512													10	92					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65253191	65253191	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr14:65253191G>A	uc001xht.2	-	15	3546	c.3492C>T	c.(3490-3492)CTC>CTT	p.L1164L	SPTB_uc001xhr.2_Silent_p.L1164L|SPTB_uc001xhs.2_Silent_p.L1164L|SPTB_uc001xhu.2_Silent_p.L1164L	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1164	Spectrin 9.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		GGCACTGAGCGAGGGTGTGGC	0.622													10	43					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65267478	65267478	+	Missense_Mutation	SNP	C	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr14:65267478C>A	uc001xht.2	-	7	926	c.872G>T	c.(871-873)GGC>GTC	p.G291V	SPTB_uc001xhr.2_Missense_Mutation_p.G291V|SPTB_uc001xhs.2_Missense_Mutation_p.G291V|SPTB_uc001xhu.2_Missense_Mutation_p.G291V	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	291	Spectrin 1.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		TTGTACCTTGCCGACACGCTT	0.498											OREG0022735	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	38					1	1	1	1	0
ZFYVE26	23503	broad.mit.edu	37	14	68241765	68241765	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr14:68241765G>A	uc001xka.2	-	27	5427	c.5288C>T	c.(5287-5289)CCA>CTA	p.P1763L	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkc.3_Missense_Mutation_p.P1763L	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	1763					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		CTCTGCTGATGGTGATCTAGG	0.443													3	17					0	0	1	0	0
TSHR	7253	broad.mit.edu	37	14	81610564	81610564	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr14:81610564T>C	uc001xvd.1	+	10	2318	c.2162T>C	c.(2161-2163)GTT>GCT	p.V721A		NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	721	Cytoplasmic (Potential).				cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity			thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	GATATTCAGGTTCAAAAGGTT	0.488			Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						41	101					0	0	1	0	0
GALC	2581	broad.mit.edu	37	14	88442785	88442785	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr14:88442785G>A	uc001xvt.2	-	7	1068	c.669C>T	c.(667-669)ATC>ATT	p.I223I	GALC_uc010tvw.1_RNA|GALC_uc010tvx.1_Silent_p.I197I|GALC_uc010tvy.1_Silent_p.I200I|GALC_uc010tvz.1_Silent_p.I167I|GALC_uc001xvu.1_Silent_p.I223I	NM_000153	NP_000144	P54803	GALC_HUMAN	galactosylceramidase isoform a precursor	223					carbohydrate metabolic process|galactosylceramide catabolic process	lysosome	cation binding|galactosylceramidase activity				0						CACTTGCTATGATTTTCACTC	0.378													19	40					0	0	1	0	0
GPR65	8477	broad.mit.edu	37	14	88477563	88477563	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr14:88477563C>T	uc001xvv.2	+	2	902	c.372C>T	c.(370-372)TTC>TTT	p.F124F		NM_003608	NP_003599	Q8IYL9	PSYR_HUMAN	G protein-coupled receptor 65	124	Cytoplasmic (Potential).				actin cytoskeleton reorganization|activation of Rho GTPase activity|apoptosis|immune response|multicellular organismal development|positive regulation of cAMP biosynthetic process|positive regulation of stress fiber assembly|response to acidity	integral to plasma membrane	G-protein coupled receptor activity				0						AGTTTTTTTTCCTAAGGACAA	0.418													81	164					0	0	1	0	0
CCDC88C	440193	broad.mit.edu	37	14	91739007	91739007	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr14:91739007C>T	uc010aty.2	-	30	6148	c.6049G>A	c.(6049-6051)GAT>AAT	p.D2017N	CCDC88C_uc001xzj.2_Missense_Mutation_p.D541N|CCDC88C_uc001xzi.2_Missense_Mutation_p.D467N	NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	2017					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				GTCTGCGGATCCCCGCCGGGC	0.647													22	102					0	0	1	0	0
PPP4R4	57718	broad.mit.edu	37	14	94741724	94741724	+	Silent	SNP	G	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr14:94741724G>T	uc001ycs.1	+	24	2617	c.2463G>T	c.(2461-2463)CGG>CGT	p.R821R		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	821						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						ATTCATTCCGGACTCGTAATG	0.418													27	209					5.77227e-19	5.87707e-19	1	1	0
SERPINA10	51156	broad.mit.edu	37	14	94756559	94756559	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr14:94756559G>A	uc001yct.2	-	2	838	c.372C>T	c.(370-372)ATC>ATT	p.I124I	SERPINA10_uc001ycu.3_Silent_p.I124I	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	124					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		GCCCTCTCTTGATCTGGGTTT	0.597													22	56					0	0	1	0	0
ATG2B	55102	broad.mit.edu	37	14	96779469	96779469	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr14:96779469G>A	uc001yfi.2	-	25	4140	c.3775C>T	c.(3775-3777)CTT>TTT	p.L1259F		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	1259										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		ACGGTAAGAAGAGATCGGATT	0.353													17	78					0	0	1	0	0
PPP2R5C	5527	broad.mit.edu	37	14	102356587	102356587	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr14:102356587A>G	uc001yko.2	+	6	783	c.643A>G	c.(643-645)ACA>GCA	p.T215A	PPP2R5C_uc010txr.1_Missense_Mutation_p.T246A|PPP2R5C_uc001ykk.2_Missense_Mutation_p.T270A|PPP2R5C_uc010txt.1_Missense_Mutation_p.T205A|PPP2R5C_uc001ykn.2_Missense_Mutation_p.T215A|PPP2R5C_uc001ykp.2_Missense_Mutation_p.T215A|PPP2R5C_uc001ykq.2_Missense_Mutation_p.T113A	NM_002719	NP_002710	Q13362	2A5G_HUMAN	gamma isoform of regulatory subunit B56, protein	215					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|negative regulation of cell proliferation|proteasomal ubiquitin-dependent protein catabolic process|signal transduction	chromosome, centromeric region|nucleus|protein phosphatase type 2A complex	protein binding|protein binding|protein phosphatase type 2A regulator activity|protein phosphatase type 2A regulator activity			ovary(1)|breast(1)	2						TATTTATGAAACAGAGCATCA	0.393													16	64					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106800471	106800471	+	RNA	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr14:106800471C>T	uc010tyt.1	-	370		c.14122G>A								Parts of antibodies, mostly variable regions.												0						ACTACTCACTCCAGCCCCTTC	0.463													6	28					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107012978	107012978	+	RNA	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr14:107012978C>T	uc010tyt.1	-	169		c.8079G>A								Parts of antibodies, mostly variable regions.												0						GGTTTTCAGGCTGTTCATTTG	0.507													52	134					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107013088	107013088	+	RNA	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr14:107013088G>A	uc010tyt.1	-	169		c.7969C>T								Parts of antibodies, mostly variable regions.												0						TGCTTCTAATGAAACCTACCC	0.507													42	92					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	20496610	20496610	+	RNA	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr15:20496610G>A	uc001ytf.1	+	6		c.663G>A								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		TCTACTAGTCGAAAGTGGCCT	0.438													5	59					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	22473026	22473026	+	RNA	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr15:22473026G>A	uc001yuj.1	-	2		c.245C>T								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:H6.																		ACTCTTGAGGGACGGGTTGTA	0.567													44	463					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24924439	24924439	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr15:24924439G>A	uc001ywo.2	+	1	3899	c.3425G>A	c.(3424-3426)GGA>GAA	p.G1142E		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	1142					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CACTACTATGGACAAGAAACA	0.453													37	140					0	0	1	0	0
SNORD115-13	100033450	broad.mit.edu	37	15	25438295	25438295	+	RNA	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr15:25438295G>A	uc001yzf.1	+	3		c.173G>A			SNORD115-13_uc001yzh.2_5'Flank|SNORD115-14_uc001yzj.1_5'Flank					Homo sapiens clone Rt-11 SNURF-SNRPN mRNA, downstream untranslated exons, alternatively spliced.												0						GAGCCTGGAGGAAGACTTGAA	0.592													6	21					0	0	1	0	0
LPCAT4	254531	broad.mit.edu	37	15	34657318	34657318	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr15:34657318G>A	uc001zig.2	-	3	463	c.369C>T	c.(367-369)GTC>GTT	p.V123V	LPCAT4_uc010bav.1_Silent_p.V123V	NM_153613	NP_705841	Q643R3	LPCT4_HUMAN	lysophosphatidylcholine acyltransferase 4	123					phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity|calcium ion binding				0						CAGCAACAAGGACAGGGGCTT	0.597													21	36					0	0	1	0	0
GJD2	57369	broad.mit.edu	37	15	35044942	35044942	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr15:35044942G>A	uc001zis.1	-	2	703	c.703C>T	c.(703-705)CCC>TCC	p.P235S	uc001zit.1_5'Flank	NM_020660	NP_065711	Q9UKL4	CXD2_HUMAN	gap junction protein, delta 2, 36kDa	235	Extracellular (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_lung(180;9.67e-07)		all cancers(64;2.75e-18)|GBM - Glioblastoma multiforme(113;1.9e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0156)		TTGATGCAGGGGTAGCGGTTA	0.478													18	47					0	0	1	0	0
LOC723972	723972	broad.mit.edu	37	15	35530034	35530034	+	RNA	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr15:35530034G>A	uc001ziy.2	+	1		c.508G>A				NR_003144				Homo sapiens hepatopoietin PCn127 mRNA, complete cds.												0						CCTggaggaggaggaggagga	0.269													12	33					0	0	1	0	0
STRC	161497	broad.mit.edu	37	15	43893104	43893104	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr15:43893104C>T	uc001zsf.2	-	25	4888	c.4810G>A	c.(4810-4812)GAG>AAG	p.E1604K	STRC_uc010bdl.2_Missense_Mutation_p.E831K|STRC_uc001zse.2_Missense_Mutation_p.E122K	NM_153700	NP_714544	Q7RTU9	STRC_HUMAN	stereocilin precursor	1604					sensory perception of sound	cell surface					0		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		TGGAGCTCCTCTGGCCGCAGT	0.557													28	91					0	0	1	0	0
DUOX2	50506	broad.mit.edu	37	15	45386459	45386459	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr15:45386459G>A	uc010bea.2	-	34	4739	c.4536C>T	c.(4534-4536)ATC>ATT	p.I1512I	DUOX2_uc001zun.2_Silent_p.I1512I	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	1512	Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		TGAACACCCCGATCTTGCGCA	0.572													12	48					0	0	1	0	0
SLC27A2	11001	broad.mit.edu	37	15	50497524	50497524	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr15:50497524C>T	uc001zxw.2	+	4	1168	c.936C>T	c.(934-936)ATC>ATT	p.I312I	SLC27A2_uc010bes.2_Silent_p.I259I|SLC27A2_uc001zxx.2_Silent_p.I77I	NM_003645	NP_003636	O14975	S27A2_HUMAN	solute carrier family 27 (fatty acid	312	Cytoplasmic (Potential).				bile acid biosynthetic process|fatty acid alpha-oxidation	endoplasmic reticulum membrane|integral to membrane|peroxisomal matrix|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity|phytanate-CoA ligase activity|pristanate-CoA ligase activity			ovary(1)|skin(1)	2		all_lung(180;0.00177)		all cancers(107;1.16e-06)|GBM - Glioblastoma multiforme(94;0.000113)		TTCAGTATATCGGTGAACTGC	0.428													50	125					0	0	1	0	0
TRPM7	54822	broad.mit.edu	37	15	50897070	50897070	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr15:50897070C>T	uc001zyt.3	-	21	3245	c.2981G>A	c.(2980-2982)GGA>GAA	p.G994E	TRPM7_uc010bew.1_Missense_Mutation_p.G994E|TRPM7_uc001zyu.2_Missense_Mutation_p.G552E	NM_017672	NP_060142	Q96QT4	TRPM7_HUMAN	transient receptor potential cation channel,	994	Cytoplasmic (Potential).				cell death	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein serine/threonine kinase activity			ovary(4)|stomach(3)|breast(1)|central_nervous_system(1)|skin(1)	10				all cancers(107;0.000819)|GBM - Glioblastoma multiforme(94;0.0045)		TACCATTTTTCCAATCATCAT	0.299													9	43					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54307551	54307551	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr15:54307551G>A	uc002ack.2	+	1	2451	c.2451G>A	c.(2449-2451)CAG>CAA	p.Q817Q		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	817					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AAAGCACACAGAGTCTGAGTG	0.433													16	49					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54685258	54685258	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr15:54685258G>A	uc002ack.2	+	16	4726	c.4726G>A	c.(4726-4728)GAT>AAT	p.D1576N	UNC13C_uc002acl.2_Missense_Mutation_p.D406N	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1576					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TAAGAAACAGGATATTCCTCG	0.378													17	64					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54707203	54707203	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr15:54707203G>A	uc002ack.2	+	17	4871	c.4871G>A	c.(4870-4872)GGA>GAA	p.G1624E	UNC13C_uc002acl.2_Missense_Mutation_p.G454E	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1624					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		CTGAACATGGGAAAAATAAGT	0.299													19	49					0	0	1	0	0
CYP11A1	1583	broad.mit.edu	37	15	74637424	74637424	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr15:74637424C>T	uc002axt.2	-	3	741	c.586G>A	c.(586-588)GGG>AGG	p.G196R	CYP11A1_uc002axs.2_Missense_Mutation_p.G38R|CYP11A1_uc010bjm.1_Missense_Mutation_p.G38R|CYP11A1_uc010bjn.1_RNA|CYP11A1_uc010bjo.1_Missense_Mutation_p.G196R|CYP11A1_uc010bjp.1_5'Flank|CYP11A1_uc010ulj.1_Intron|CYP11A1_uc010bjq.2_Missense_Mutation_p.G196R	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	196					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	CTGATGTCCCCCGAGTAATTT	0.582													15	57					0	0	1	0	0
MAN2C1	4123	broad.mit.edu	37	15	75651420	75651420	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr15:75651420C>T	uc002baf.2	-	18	2138	c.2121G>A	c.(2119-2121)TTG>TTA	p.L707L	MAN2C1_uc002bag.2_Silent_p.L707L|MAN2C1_uc002bah.2_Silent_p.L724L|MAN2C1_uc010bkk.2_Silent_p.L608L	NM_006715	NP_006706	Q9NTJ4	MA2C1_HUMAN	mannosidase, alpha, class 2C, member 1	707					mannose metabolic process		alpha-mannosidase activity|carbohydrate binding|protein binding|zinc ion binding				0						CCACCAGGACCAAGGACGTCA	0.587													16	53					0	0	1	0	0
WDR73	84942	broad.mit.edu	37	15	85188820	85188820	+	Silent	SNP	G	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr15:85188820G>C	uc002bkw.2	-	7	781	c.765C>G	c.(763-765)CCC>CCG	p.P255P	WDR73_uc002bkv.2_RNA|WDR73_uc002bkx.2_RNA|WDR73_uc010upa.1_3'UTR|uc002bky.1_Silent_p.R104R	NM_032856	NP_116245	Q6P4I2	WDR73_HUMAN	WD repeat domain 73	255											0						AGAGATCCCGGGGGTCAAGAA	0.622													7	15					0	0	1	0	0
FES	2242	broad.mit.edu	37	15	91430422	91430422	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr15:91430422G>A	uc002bpv.2	+	5	586	c.490G>A	c.(490-492)GAC>AAC	p.D164N	FES_uc010uqj.1_Missense_Mutation_p.D106N|FES_uc010uqk.1_Missense_Mutation_p.D146N|FES_uc002bpw.2_RNA|FES_uc010bny.2_Missense_Mutation_p.D106N|FES_uc002bpx.2_Missense_Mutation_p.D164N|FES_uc002bpy.2_Missense_Mutation_p.D106N	NM_002005	NP_001996	P07332	FES_HUMAN	feline sarcoma oncogene isoform 1	164	Potential.|Important for interaction with membranes containing phosphoinositides.				axon guidance|cell proliferation|peptidyl-tyrosine phosphorylation	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			GGCAGACAAGGACCGTGACAA	0.607													23	74					0	0	1	0	0
C15orf51	196968	broad.mit.edu	37	15	100340421	100340421	+	RNA	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr15:100340421C>T	uc010urx.1	-	4		c.506G>A			C15orf51_uc010ury.1_RNA|uc002bvp.2_5'Flank|C15orf51_uc010urz.1_RNA|C15orf51_uc010bow.2_RNA|uc002bvt.1_5'Flank	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						CACGCGAGCGCAGGTTGGACA	0.607													5	18					0	0	1	0	0
ADAMTS17	170691	broad.mit.edu	37	15	100537693	100537693	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr15:100537693A>G	uc002bvv.1	-	19	2772	c.2693T>C	c.(2692-2694)GTC>GCC	p.V898A		NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	898	TSP type-1 3.				proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		CCGCGTAGCGACGTGTGTGCC	0.577													4	36					0	0	1	0	0
AXIN1	8312	broad.mit.edu	37	16	396957	396957	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr16:396957G>A	uc002cgp.1	-	2	246	c.69C>T	c.(67-69)CCC>CCT	p.P23P	AXIN1_uc002cgq.1_Silent_p.P23P	NM_003502	NP_003493	O15169	AXIN1_HUMAN	axin 1 isoform a	23	Tankyrase-binding motif.				activation of JUN kinase activity|activation of protein kinase activity|apoptosis|axial mesoderm formation|canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation|cellular protein complex assembly|cellular response to organic cyclic compound|cytoplasmic microtubule organization|determination of left/right symmetry|dorsal/ventral axis specification|embryonic eye morphogenesis|embryonic skeletal joint morphogenesis|forebrain anterior/posterior pattern formation|muscle cell development|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|olfactory placode formation|optic placode formation|positive regulation of JNK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity|regulation of catenin import into nucleus|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway involved in somitogenesis	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|cell cortex|cytoplasmic membrane-bounded vesicle|cytoplasmic microtubule|cytosol|lateral plasma membrane|nucleus|perinuclear region of cytoplasm|postsynaptic density	armadillo repeat domain binding|beta-catenin binding|GTPase activator activity|I-SMAD binding|p53 binding|protein complex scaffold|protein homodimerization activity|protein kinase binding|signal transducer activity|ubiquitin protein ligase binding			breast(1)|liver(1)	2		all_cancers(16;2.75e-07)|all_epithelial(16;1.6e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00774)|all_lung(18;0.0187)				CAGGCACTGGGGGTCGGGGAG	0.562													18	59					0	0	1	0	0
WDR90	197335	broad.mit.edu	37	16	705456	705456	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr16:705456C>T	uc002cii.1	+	15	1760	c.1706C>T	c.(1705-1707)TCG>TTG	p.S569L	WDR90_uc002cig.1_Missense_Mutation_p.S569L|WDR90_uc002cih.1_Missense_Mutation_p.S570L|WDR90_uc002cij.1_Intron|WDR90_uc002cik.1_Missense_Mutation_p.S96L|WDR90_uc002cil.1_5'Flank|WDR90_uc002cim.1_5'Flank	NM_145294	NP_660337	Q96KV7	WDR90_HUMAN	WD repeat domain 90	569										ovary(1)	1		Hepatocellular(780;0.0218)				CCGGAGCCCTCGGCTGCCATG	0.721													4	6					0	0	1	0	0
MSLN	10232	broad.mit.edu	37	16	816934	816934	+	Missense_Mutation	SNP	G	A	A	rs34926266	byFrequency	TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr16:816934G>A	uc002cjw.1	+	14	1498	c.1447G>A	c.(1447-1449)GTC>ATC	p.V483I	MSLN_uc002cjt.1_Missense_Mutation_p.V475I|MSLN_uc002cju.1_Missense_Mutation_p.V475I|MSLN_uc010brd.1_Missense_Mutation_p.V474I|MSLN_uc002cjv.1_Missense_Mutation_p.V475I|MSLN_uc002cjx.1_Missense_Mutation_p.V475I|MSLN_uc002cjy.1_Missense_Mutation_p.V140I	NM_013404	NP_037536	Q13421	MSLN_HUMAN	mesothelin isoform 2 preproprotein	483					cell adhesion	anchored to membrane|extracellular region|Golgi apparatus|plasma membrane				pancreas(1)	1		Hepatocellular(780;0.00335)				GCAGCTGGACGTCCTCTATCC	0.637													5	77					0	0	1	0	0
CACNA1H	8912	broad.mit.edu	37	16	1270717	1270717	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr16:1270717C>T	uc002cks.2	+	35	7033	c.6785C>T	c.(6784-6786)ACC>ATC	p.T2262I	CACNA1H_uc002ckt.2_Missense_Mutation_p.T2256I|CACNA1H_uc002cku.2_Missense_Mutation_p.T957I|CACNA1H_uc010brj.2_Missense_Mutation_p.T973I|CACNA1H_uc002ckv.2_Missense_Mutation_p.T951I	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	2262	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	GAGCACCTGACCGTCCCCAGC	0.687													8	22					0	0	1	0	0
C16orf42	115939	broad.mit.edu	37	16	1400180	1400180	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr16:1400180G>A	uc002cll.2	-	4	650	c.582C>T	c.(580-582)TTC>TTT	p.F194F	GNPTG_uc002clm.2_5'Flank	NM_001001410	NP_001001410	Q9UJK0	TSR3_HUMAN	hypothetical protein LOC115939	194					rRNA processing						0		Hepatocellular(780;0.0893)				TCAGGTCCAAGAAGCCCTTGC	0.587													15	28					0	0	1	0	0
TBL3	10607	broad.mit.edu	37	16	2027386	2027386	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr16:2027386G>A	uc002cnu.1	+	16	1803	c.1701G>A	c.(1699-1701)CTG>CTA	p.L567L	TBL3_uc002cnv.1_Silent_p.L453L|TBL3_uc010bsb.1_Silent_p.L356L|TBL3_uc010bsc.1_Silent_p.L434L|TBL3_uc010uvt.1_Silent_p.L36L|TBL3_uc002cnw.1_5'Flank	NM_006453	NP_006444	Q12788	TBL3_HUMAN	transducin beta-like 3	567	WD 12.				G-protein signaling, coupled to cGMP nucleotide second messenger|rRNA processing	nucleolus|small-subunit processome	receptor signaling protein activity				0						CTTCTGTGCTGAAGGTGGCCT	0.657													30	60					0	0	1	0	0
ABCA3	21	broad.mit.edu	37	16	2326779	2326779	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr16:2326779C>T	uc002cpy.1	-	33	5723	c.5011G>A	c.(5011-5013)GAA>AAA	p.E1671K	ABCA3_uc010bsk.1_Missense_Mutation_p.E1613K	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	1671					response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				CCGTACTTTTCCTTGGCTTTC	0.602													17	53					0	0	1	0	0
XYLT1	64131	broad.mit.edu	37	16	17211775	17211775	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr16:17211775G>A	uc002dfa.2	-	11	2370	c.2285C>T	c.(2284-2286)CCC>CTC	p.P762L		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	762	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						CTCATCCATGGGCCCCAGAAG	0.572													20	67					0	0	1	0	0
GPR139	124274	broad.mit.edu	37	16	20043600	20043600	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr16:20043600G>T	uc002dgu.1	-	2	681	c.519C>A	c.(517-519)GAC>GAA	p.D173E	GPR139_uc010vaw.1_Missense_Mutation_p.D80E	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	173	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(2)	2						TGCTGATGTAGTCTTCAGTCC	0.512													26	62					4.26978e-12	4.31117e-12	1	1	0
USP31	57478	broad.mit.edu	37	16	23079893	23079893	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr16:23079893G>A	uc002dll.2	-	16	3533	c.3533C>T	c.(3532-3534)TCC>TTC	p.S1178F	USP31_uc002dlk.2_Missense_Mutation_p.S450F|USP31_uc010vca.1_Missense_Mutation_p.S481F|USP31_uc010bxm.2_Missense_Mutation_p.S466F	NM_020718	NP_065769	Q70CQ4	UBP31_HUMAN	ubiquitin specific peptidase 31	1178	Ser-rich.				ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(3)|lung(3)|breast(2)|pancreas(1)|skin(1)	10				GBM - Glioblastoma multiforme(48;0.0187)		CACCCGAGGGGAATTGGGTTT	0.652													22	50					0	0	1	0	0
PRKCB	5579	broad.mit.edu	37	16	24166055	24166055	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr16:24166055C>T	uc002dmd.2	+	10	1313	c.1116C>T	c.(1114-1116)ATC>ATT	p.I372I	PRKCB_uc002dme.2_Silent_p.I372I	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	372	Protein kinase.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	CTGTGAAGATCCTGAAGAAGG	0.557													14	44					0	0	1	0	0
MYST1	84148	broad.mit.edu	37	16	31141818	31141818	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr16:31141818G>A	uc002eay.2	+	9	1066	c.1048G>A	c.(1048-1050)GAG>AAG	p.E350K	MYST1_uc002eax.2_Missense_Mutation_p.E350K|MYST1_uc002eaz.2_Missense_Mutation_p.E192K|MYST1_uc002eba.2_Missense_Mutation_p.E134K|MYST1_uc002ebb.2_RNA	NM_032188	NP_115564	Q9H7Z6	MYST1_HUMAN	MYST histone acetyltransferase 1 isoform 1	350					histone H4-K16 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex|MSL complex	histone acetyltransferase activity|metal ion binding|methylated histone residue binding|transcription factor binding			ovary(1)	1						CGGCTCCCCGGAGAAGCCACT	0.607													4	44					0	0	1	0	0
ITGAD	3681	broad.mit.edu	37	16	31434439	31434439	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr16:31434439G>A	uc002ebv.1	+	24	2834	c.2785G>A	c.(2785-2787)GAA>AAA	p.E929K	ITGAD_uc010cap.1_Missense_Mutation_p.E930K	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	929	Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						CTCCAGGCAGGAAGAATCCAC	0.517													9	58					0	0	1	0	0
N4BP1	9683	broad.mit.edu	37	16	48595380	48595380	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr16:48595380G>A	uc002efp.2	-	2	1411	c.1174C>T	c.(1174-1176)CAA>TAA	p.Q392*		NM_153029	NP_694574	O75113	N4BP1_HUMAN	Nedd4 binding protein 1	392					negative regulation of proteasomal ubiquitin-dependent protein catabolic process|negative regulation of protein ubiquitination	nucleolus|PML body					0		all_cancers(37;0.179)|all_lung(18;0.11)				CTGTCTTCTTGGAATCTTTTA	0.353													18	57					0	0	1	0	0
CDH16	1014	broad.mit.edu	37	16	66942342	66942342	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr16:66942342C>T	uc002eql.2	-	18	2516	c.2443G>A	c.(2443-2445)GAC>AAC	p.D815N	CDH16_uc010cdy.2_Missense_Mutation_p.D793N|CDH16_uc002eqm.2_Missense_Mutation_p.D718N	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	815	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		TGATCCGGGTCCTTCTTCCTT	0.587													14	79					0	0	1	0	0
SMPD3	55512	broad.mit.edu	37	16	68406070	68406070	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr16:68406070C>T	uc002ewa.2	-	3	437	c.15G>A	c.(13-15)ACG>ACA	p.T5T	SMPD3_uc010cfe.2_Silent_p.T5T|SMPD3_uc010vlh.1_Silent_p.T5T	NM_018667	NP_061137	Q9NY59	NSMA2_HUMAN	neutral sphingomyelin phosphodiesterase 3	5	Lumenal (Potential).				cell cycle|multicellular organismal development|sphingomyelin catabolic process	Golgi membrane|integral to membrane|plasma membrane	metal ion binding|sphingomyelin phosphodiesterase activity			skin(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0184)|Epithelial(162;0.0785)	Phosphatidylserine(DB00144)	GAAAGGGGGTCGTGTACAAAA	0.627													4	17					0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	70268158	70268158	+	RNA	SNP	A	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr16:70268158A>C	uc010cfp.1	-	3		c.257T>G								Homo sapiens cDNA, FLJ98908.																		TTCTTCATTAAAACAGCTACT	0.333													3	17					0	0	1	0	0
DDX19B	11269	broad.mit.edu	37	16	70359509	70359509	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr16:70359509C>T	uc002eyo.2	+	7	654	c.525C>T	c.(523-525)GCC>GCT	p.A175A	DDX19B_uc010vly.1_Silent_p.A175A|DDX19A_uc002eys.2_Intron|DDX19B_uc010vlv.1_Silent_p.A149A|DDX19B_uc010vlw.1_Silent_p.A66A|DDX19B_uc002eyp.2_Silent_p.A144A|DDX19B_uc002eyq.2_Silent_p.A66A|DDX19B_uc002eyr.2_Silent_p.A24A|DDX19B_uc010vlx.1_Silent_p.A24A|uc002eyt.2_Intron	NM_007242	NP_009173	Q9UMR2	DD19B_HUMAN	DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform	175	Helicase ATP-binding.				mRNA export from nucleus|protein transport|transmembrane transport	cytoplasm|nuclear membrane|nuclear pore	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			kidney(1)	1		Ovarian(137;0.0694)				ATGAGCTCGCCCTCCAAACAG	0.418													65	146					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77325201	77325201	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr16:77325201T>C	uc002ffc.3	-	21	3783	c.3364A>G	c.(3364-3366)AAC>GAC	p.N1122D		NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1122					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						GCTACCATGTTGTACACTGGA	0.498													48	120					0	0	1	0	0
BCMO1	53630	broad.mit.edu	37	16	81295874	81295874	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr16:81295874G>A	uc002fgn.1	+	4	675	c.457G>A	c.(457-459)GAA>AAA	p.E153K	BCMO1_uc002fgm.1_Missense_Mutation_p.E153K|BCMO1_uc010vnp.1_Missense_Mutation_p.E84K	NM_017429	NP_059125	Q9HAY6	BCDO1_HUMAN	beta-carotene 15,15'-monooxygenase	153					retinoid metabolic process|steroid metabolic process	cytosol	beta-carotene 15,15'-monooxygenase activity|metal ion binding|monooxygenase activity				0						ACAGACTCTGGAAACCCTGGA	0.507													32	113					0	0	1	0	0
SDR42E1	93517	broad.mit.edu	37	16	82032973	82032973	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr16:82032973G>A	uc002fgu.2	-	3	1053	c.925C>T	c.(925-927)CCC>TCC	p.P309S		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	309					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						GTGAGGAAGGGCTGGAAGTTG	0.448													38	88					0	0	1	0	0
OR1D2	4991	broad.mit.edu	37	17	2995901	2995901	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:2995901G>A	uc010vrb.1	-	1	390	c.390C>T	c.(388-390)CTC>CTT	p.L130L		NM_002548	NP_002539	P34982	OR1D2_HUMAN	olfactory receptor, family 1, subfamily D,	130	Cytoplasmic (Potential).				cellular component movement|chemotaxis|protein import into nucleus, translocation|sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						TGGTGTAGTGGAGGGGGCAGC	0.547													38	106					0	0	1	0	0
PITPNM3	83394	broad.mit.edu	37	17	6386917	6386917	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:6386917G>A	uc002gdd.3	-	6	658	c.507C>T	c.(505-507)TTC>TTT	p.F169F	PITPNM3_uc010cln.2_Silent_p.F133F|PITPNM3_uc002gdc.3_5'Flank	NM_031220	NP_112497	Q9BZ71	PITM3_HUMAN	PITPNM family member 3 isoform 1	169					phosphatidylinositol metabolic process	endomembrane system|integral to membrane	calcium ion binding|lipid binding|phosphatidylinositol transporter activity|receptor tyrosine kinase binding			ovary(2)|central_nervous_system(2)	4				Colorectal(2;0.000372)|READ - Rectum adenocarcinoma(2;0.0276)|LUAD - Lung adenocarcinoma(2;0.0836)|COAD - Colon adenocarcinoma(228;0.185)		GGGCAGCAGGGAAATGGGCTC	0.597													14	35					0	0	1	0	0
CHD3	1107	broad.mit.edu	37	17	7808948	7808948	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:7808948A>G	uc002gje.2	+	27	4298	c.4148A>G	c.(4147-4149)CAG>CGG	p.Q1383R	CHD3_uc002gjd.2_Missense_Mutation_p.Q1442R|CHD3_uc002gjf.2_Missense_Mutation_p.Q1383R|CHD3_uc002gjh.2_5'UTR|SCARNA21_uc002gji.1_5'Flank	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	1383					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				GGGCGTAGACAGTCAAAGAGG	0.567													6	8					0	0	1	0	0
ALOX15B	247	broad.mit.edu	37	17	7951740	7951740	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:7951740G>A	uc002gju.2	+	14	2004	c.1888G>A	c.(1888-1890)GAG>AAG	p.E630K	ALOX15B_uc002gjv.2_Missense_Mutation_p.E601K|ALOX15B_uc002gjw.2_Missense_Mutation_p.E556K|ALOX15B_uc010vun.1_Missense_Mutation_p.E618K|ALOX15B_uc010cnp.2_Missense_Mutation_p.E436K	NM_001141	NP_001132	O15296	LX15B_HUMAN	arachidonate 15-lipoxygenase, second type	630	Lipoxygenase.				induction of apoptosis|leukotriene biosynthetic process|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of growth|prostate gland development|regulation of epithelial cell differentiation	cytoplasm	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			ovary(1)	1						GCACTTCACAGAGGAGGCCCC	0.662													16	66					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10304766	10304766	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:10304766C>T	uc002gmm.2	-	24	3029	c.2934G>A	c.(2932-2934)GTG>GTA	p.V978V	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	978	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TAAGATTTTTCACCTACAAAG	0.413									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				70	205					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10426437	10426437	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:10426437C>T	uc010coi.2	-	39	5771	c.5643G>A	c.(5641-5643)GTG>GTA	p.V1881V	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.V1881V|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1881	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TATAAGATTTCACTTTTGCCT	0.323													27	56					0	0	1	0	0
MYOCD	93649	broad.mit.edu	37	17	12626297	12626297	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:12626297G>A	uc002gnn.2	+	5	686	c.387G>A	c.(385-387)GTG>GTA	p.V129V	MYOCD_uc002gno.2_Silent_p.V129V|MYOCD_uc002gnp.1_Silent_p.V33V	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	129	RPEL 3.				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		TTCTTCCTGTGGATTCTGCTG	0.478													50	133					0	0	1	0	0
ZNF287	57336	broad.mit.edu	37	17	16470714	16470714	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:16470714G>A	uc002gqi.2	-	2	785	c.332C>T	c.(331-333)TCC>TTC	p.S111F		NM_020653	NP_065704	Q9HBT7	ZN287_HUMAN	zinc finger protein 287	104	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.083)		TGGATACTGGGACTTTACCCA	0.502													37	99					0	0	1	0	0
ALDH3A1	218	broad.mit.edu	37	17	19646731	19646731	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:19646731C>T	uc010cqu.2	-	2	538	c.208G>A	c.(208-210)GAG>AAG	p.E70K	ALDH3A1_uc010vzd.1_Missense_Mutation_p.E70K|ALDH3A1_uc002gwj.2_Missense_Mutation_p.E70K|ALDH3A1_uc010cqv.2_Missense_Mutation_p.E70K|ALDH3A1_uc002gwk.2_5'UTR|ALDH3A1_uc002gwl.1_5'UTR	NM_001135168	NP_001128640	P30838	AL3A1_HUMAN	aldehyde dehydrogenase 3A1	70					cellular aldehyde metabolic process	cytosol|endoplasmic reticulum	alcohol dehydrogenase (NADP+) activity|aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase			ovary(1)|pancreas(1)	2	all_cancers(12;4.01e-05)|all_epithelial(12;0.00301)|Breast(13;0.186)			Colorectal(15;0.0829)	NADH(DB00157)	TACTCGATCTCCTCTAGGACG	0.612													29	111					0	0	1	0	0
USP22	23326	broad.mit.edu	37	17	20906359	20906359	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:20906359G>A	uc002gym.3	-	13	1767	c.1563C>T	c.(1561-1563)TTC>TTT	p.F521F	USP22_uc002gyn.3_Silent_p.F509F|USP22_uc002gyl.3_Silent_p.F416F	NM_015276	NP_056091	Q9UPT9	UBP22_HUMAN	ubiquitin thiolesterase 22	521					cell cycle|embryo development|histone deubiquitination|histone H4 acetylation|histone ubiquitination|positive regulation of mitotic cell cycle|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	SAGA complex	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)	1						CGTATTCCAGGAACTGTTTGT	0.532													93	193					0	0	1	0	0
USP22	23326	broad.mit.edu	37	17	20919102	20919102	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:20919102G>A	uc002gym.3	-	6	1005	c.801C>T	c.(799-801)CTC>CTT	p.L267L	USP22_uc002gyn.3_Silent_p.L255L|USP22_uc002gyl.3_Silent_p.L162L	NM_015276	NP_056091	Q9UPT9	UBP22_HUMAN	ubiquitin thiolesterase 22	267					cell cycle|embryo development|histone deubiquitination|histone H4 acetylation|histone ubiquitination|positive regulation of mitotic cell cycle|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	SAGA complex	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)	1						GGGCCGCGATGAGGAACTCGT	0.632													5	17					0	0	1	0	0
FAM27L	284123	broad.mit.edu	37	17	21825445	21825445	+	RNA	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:21825445C>T	uc002gyz.2	+	1		c.76C>T				NR_028336				Homo sapiens family with sequence similarity 27-like, mRNA (cDNA clone MGC:35151 IMAGE:5169482), complete cds.												0				UCEC - Uterine corpus endometrioid carcinoma (53;0.11)|BRCA - Breast invasive adenocarcinoma(1;0.00463)		cctgacttctccacggggtac	0													8	33					0	0	1	0	0
EVI2A	2123	broad.mit.edu	37	17	29645707	29645707	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:29645707T>A	uc002hgm.2	-	2	540	c.325A>T	c.(325-327)AGC>TGC	p.S109C	NF1_uc002hgg.2_Intron|NF1_uc002hgh.2_Intron|NF1_uc002hgi.1_Intron|NF1_uc010cso.2_Intron|EVI2A_uc002hgl.2_Missense_Mutation_p.S132C	NM_014210	NP_055025	P22794	EVI2A_HUMAN	ecotropic viral integration site 2A isoform 2	109	Extracellular (Potential).					integral to membrane	transmembrane receptor activity			ovary(1)|breast(1)	2		all_cancers(10;6.97e-11)|all_epithelial(10;0.0051)|all_hematologic(16;0.0149)|Breast(31;0.0155)|Myeloproliferative disorder(56;0.0255)|Acute lymphoblastic leukemia(14;0.0257)|all_lung(9;0.0468)|Lung NSC(157;0.094)		UCEC - Uterine corpus endometrioid carcinoma (4;6.64e-05)|all cancers(4;5.94e-13)|Epithelial(4;7.98e-12)|OV - Ovarian serous cystadenocarcinoma(4;9.4e-12)|GBM - Glioblastoma multiforme(4;0.18)		TTTTCAATGCTCTGTACTGTT	0.363													54	143					0	0	1	0	0
ACCN1	40	broad.mit.edu	37	17	31438984	31438984	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:31438984G>A	uc002hhu.2	-	2	931	c.657C>T	c.(655-657)ATC>ATT	p.I219I	ACCN1_uc002hht.2_Silent_p.I270I	NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	219	Extracellular (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	TGTCCAGCATGATCTCCAGCC	0.562													29	77					0	0	1	0	0
UNC45B	146862	broad.mit.edu	37	17	33491062	33491062	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:33491062C>T	uc002hja.2	+	9	1125	c.1028C>T	c.(1027-1029)TCC>TTC	p.S343F	UNC45B_uc002hjb.2_Missense_Mutation_p.S343F|UNC45B_uc002hjc.2_Missense_Mutation_p.S343F|UNC45B_uc010cto.2_Missense_Mutation_p.S343F	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	343					cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				GATCTGCCATCCTGCCTGCCC	0.582													50	163					0	0	1	0	0
AMAC1	146861	broad.mit.edu	37	17	33520640	33520640	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:33520640C>T	uc002hjd.2	-	1	773	c.687G>A	c.(685-687)GTG>GTA	p.V229V		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	229	Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		CCAGCAGCCCCACCAAGCCAG	0.632													34	99					0	0	1	0	0
C17orf66	256957	broad.mit.edu	37	17	34195737	34195737	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:34195737C>T	uc002hke.1	-	1	159	c.10G>A	c.(10-12)GAA>AAA	p.E4K	C17orf66_uc010wck.1_Intron|C17orf66_uc010wcl.1_Missense_Mutation_p.E4K|C17orf66_uc010wcm.1_Intron	NM_152781	NP_689994	A2RTY3	CQ066_HUMAN	hypothetical protein LOC256957	4							binding			breast(2)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0184)		GTTGATTTTTCATAGGCCATC	0.527													13	55					0	0	1	0	0
KRT31	3881	broad.mit.edu	37	17	39550372	39550372	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:39550372C>T	uc002hwn.2	-	7	1200	c.1147G>A	c.(1147-1149)GGA>AGA	p.G383R	KRT31_uc010cxn.2_3'UTR	NM_002277	NP_002268	Q15323	K1H1_HUMAN	keratin 31	383	Tail.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000496)				AGACAGGGTCCGATGGGCTTG	0.572													21	56					0	0	1	0	0
KCNH4	23415	broad.mit.edu	37	17	40315719	40315719	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:40315719G>A	uc002hzb.2	-	13	2715	c.2382C>T	c.(2380-2382)TCC>TCT	p.S794S		NM_012285	NP_036417	Q9UQ05	KCNH4_HUMAN	potassium voltage-gated channel, subfamily H,	794	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	two-component sensor activity|voltage-gated potassium channel activity			large_intestine(1)	1		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		GGCCGTGAGGGGAGGCACTGT	0.657													3	8					0	0	1	0	0
G6PC	2538	broad.mit.edu	37	17	41052951	41052951	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:41052951C>T	uc002icb.1	+	1	137	c.58C>T	c.(58-60)CAG>TAG	p.Q20*	LOC388387_uc002ibz.2_5'Flank|LOC388387_uc002iby.2_5'Flank|LOC388387_uc002ica.2_5'Flank|LOC388387_uc010whe.1_5'Flank|G6PC_uc010whf.1_Nonsense_Mutation_p.Q22*	NM_000151	NP_000142	P35575	G6PC_HUMAN	glucose-6-phosphatase, catalytic subunit	20	Lumenal (Potential).		Q -> R (in GSD1A).		gluconeogenesis|glucose homeostasis|transmembrane transport	integral to endoplasmic reticulum membrane	glucose-6-phosphatase activity|phosphate binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.113)		ACATTACCTCCAGGTGAATTA	0.502									Glycogen_Storage_Disease_type_Ia				42	74					0	0	1	0	0
TBKBP1	9755	broad.mit.edu	37	17	45776734	45776734	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:45776734G>A	uc002ilu.2	+	5	1532	c.683G>A	c.(682-684)CGG>CAG	p.R228Q		NM_014726	NP_055541	A7MCY6	TBKB1_HUMAN	TBK1 binding protein 1	228	Potential.				innate immune response						0						GAGCGGCGGCGGCTAGAAGAG	0.711											OREG0024498	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	12					0	0	1	0	0
ABCC3	8714	broad.mit.edu	37	17	48741355	48741355	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:48741355G>A	uc002isl.2	+	10	1301	c.1221G>A	c.(1219-1221)GGG>GGA	p.G407G	ABCC3_uc002isk.3_Silent_p.G407G|ABCC3_uc002ism.2_Missense_Mutation_p.G120R	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	407	Cytoplasmic (By similarity).|ABC transmembrane type-1 1.				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	CCACTGTGGGGGAAATTGTCA	0.572													16	78					0	0	1	0	0
C17orf47	284083	broad.mit.edu	37	17	56620451	56620451	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:56620451A>G	uc002iwq.1	-	1	1233	c.1097T>C	c.(1096-1098)GTT>GCT	p.V366A	SEPT4_uc010wnx.1_5'Flank|SEPT4_uc010wny.1_5'Flank	NM_001038704	NP_001033793	Q8NEP4	CQ047_HUMAN	hypothetical protein LOC284083	366										breast(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CTCTGGAGTAACAAACATGGA	0.502													16	61					0	0	1	0	0
CLTC	1213	broad.mit.edu	37	17	57759755	57759755	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:57759755T>A	uc002ixq.1	+	22	4009	c.3566T>A	c.(3565-3567)TTT>TAT	p.F1189Y	CLTC_uc002ixp.2_Missense_Mutation_p.F1189Y|CLTC_uc002ixr.1_Missense_Mutation_p.F1193Y	NM_004859	NP_004850	Q00610	CLH1_HUMAN	clathrin heavy chain 1	1189	Heavy chain arm.|Proximal segment.				axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|mitosis|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport|receptor internalization|transferrin transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|cytosol|melanosome|spindle	protein binding|structural molecule activity		CLTC/ALK(44)|CLTC/TFE3(2)	haematopoietic_and_lymphoid_tissue(33)|soft_tissue(11)|kidney(2)|ovary(1)|breast(1)	48	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					TTAGAAGAATTTATCAATGGA	0.408			T	ALK|TFE3	ALCL|renal 								35	78					0	0	1	0	0
KCNH6	81033	broad.mit.edu	37	17	61611589	61611589	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:61611589C>T	uc002jay.2	+	5	1098	c.1018C>T	c.(1018-1020)CAC>TAC	p.H340Y	KCNH6_uc002jax.1_Missense_Mutation_p.H340Y|KCNH6_uc010wpl.1_Missense_Mutation_p.H217Y|KCNH6_uc010wpm.1_Missense_Mutation_p.H340Y|KCNH6_uc002jaz.1_Missense_Mutation_p.H340Y	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	340	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	CATCGCCGTCCACTACTTCAA	0.587													35	57					0	0	1	0	0
ABCA6	23460	broad.mit.edu	37	17	67077281	67077281	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:67077281G>A	uc002jhw.1	-	37	4797	c.4622C>T	c.(4621-4623)TCC>TTC	p.S1541F		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	1541					transport	integral to membrane	ATP binding|ATPase activity	p.S1541Y(1)		upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					TAACAAAGAGGAATACCTGAA	0.373													39	96					0	0	1	0	0
SSTR2	6752	broad.mit.edu	37	17	71166097	71166097	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:71166097C>T	uc002jje.2	+	2	999	c.639C>T	c.(637-639)TTC>TTT	p.F213F		NM_001050	NP_001041	P30874	SSR2_HUMAN	somatostatin receptor 2	213	Helical; Name=5; (Potential).				digestion|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	PDZ domain binding|somatostatin receptor activity				0			LUSC - Lung squamous cell carcinoma(166;0.197)			TCTACACTTTCATTCTGGGGT	0.527													28	89					0	0	1	0	0
LLGL2	3993	broad.mit.edu	37	17	73569287	73569287	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:73569287G>A	uc002joh.2	+	20	2807	c.2653G>A	c.(2653-2655)GTG>ATG	p.V885M	LLGL2_uc002joi.2_Missense_Mutation_p.V885M|LLGL2_uc010dgg.1_Missense_Mutation_p.V885M|LLGL2_uc002joj.2_Missense_Mutation_p.V874M|LLGL2_uc010wsd.1_Missense_Mutation_p.V512M	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	885	WD 13.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			CAAGCCCCAGGTGCGCTACAG	0.652													34	64					0	0	1	0	0
PCYT2	5833	broad.mit.edu	37	17	79865706	79865706	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:79865706G>A	uc002kcf.1	-	5	498	c.435C>T	c.(433-435)TCC>TCT	p.S145S	PCYT2_uc010wva.1_Silent_p.S113S|PCYT2_uc010wvb.1_Silent_p.S113S|PCYT2_uc002kce.1_Silent_p.S67S|PCYT2_uc002kcg.1_Silent_p.S156S|PCYT2_uc002kch.1_Silent_p.S145S|PCYT2_uc002kci.1_Silent_p.S86S|PCYT2_uc010dii.1_Silent_p.S145S|PCYT2_uc010wvc.1_Silent_p.S67S	NM_002861	NP_002852	Q99447	PCY2_HUMAN	phosphate cytidylyltransferase 2, ethanolamine	145	Catalytic 1 (Potential).				phospholipid biosynthetic process		ethanolamine-phosphate cytidylyltransferase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.013)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			GGTCTGTGGTGGACACCCCTT	0.642													13	43					0	0	1	0	0
MYOM1	8736	broad.mit.edu	37	18	3151782	3151782	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr18:3151782G>A	uc002klp.2	-	12	2087	c.1753C>T	c.(1753-1755)CGA>TGA	p.R585*	MYOM1_uc002klq.2_Nonsense_Mutation_p.R585*	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	585	Fibronectin type-III 1.					striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						TTCACAGCTCGAACTCGGAAG	0.488											OREG0024839	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	87					0	0	1	0	0
DSG1	1828	broad.mit.edu	37	18	28918401	28918401	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr18:28918401G>A	uc002kwp.2	+	10	1601	c.1389G>A	c.(1387-1389)ACG>ACA	p.T463T		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	463	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			ACCAAGGAACGATTCTCTCTA	0.318													24	86					0	0	1	0	0
DSG4	147409	broad.mit.edu	37	18	28956913	28956913	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr18:28956913C>T	uc002kwq.2	+	1	174	c.39C>T	c.(37-39)ATC>ATT	p.I13I	DSG4_uc002kwr.2_Silent_p.I13I	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	13					homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GCCTTTTGATCATTCTAATGG	0.423													20	38					0	0	1	0	0
DSG4	147409	broad.mit.edu	37	18	28968386	28968386	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr18:28968386G>A	uc002kwq.2	+	4	408	c.273G>A	c.(271-273)GGG>GGA	p.G91G	DSG4_uc002kwr.2_Silent_p.G91G	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	91	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CTGGAGTAGGGATTGATCGAC	0.413													21	40					0	0	1	0	0
DSG4	147409	broad.mit.edu	37	18	28972152	28972152	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr18:28972152C>T	uc002kwq.2	+	8	989	c.854C>T	c.(853-855)TCG>TTG	p.S285L	DSG4_uc002kwr.2_Missense_Mutation_p.S285L	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	285	Cadherin 3.|Extracellular (Potential).		Missing (in LAH1).		homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TGTTTAAGTTCGGAACTGATA	0.338													35	88					0	0	1	0	0
VPS4B	9525	broad.mit.edu	37	18	61064475	61064475	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr18:61064475C>T	uc002lix.2	-	9	1144	c.884G>A	c.(883-885)CGA>CAA	p.R295Q	VPS4B_uc010dpx.2_Missense_Mutation_p.R295Q|VPS4B_uc010dpy.2_Missense_Mutation_p.R177Q|VPS4B_uc010dpz.1_Missense_Mutation_p.R177Q	NM_004869	NP_004860	O75351	VPS4B_HUMAN	vacuolar protein sorting factor 4B	295					cell cycle|cell division|cellular membrane organization|endosome to lysosome transport via multivesicular body sorting pathway|intracellular cholesterol transport|protein transport|response to lipid	cytosol|early endosome|late endosome membrane|lysosome|nucleus|vacuolar membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding			ovary(1)	1						AATATAAATTCGTTTCTCAAA	0.388													19	43					0	0	1	0	0
CDH7	1005	broad.mit.edu	37	18	63491888	63491888	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr18:63491888C>T	uc002ljz.2	+	6	1127	c.802C>T	c.(802-804)CAA>TAA	p.Q268*	CDH7_uc002lka.2_Nonsense_Mutation_p.Q268*|CDH7_uc002lkb.2_Nonsense_Mutation_p.Q268*	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	268	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				AGGGTCTTATCAATATAACGT	0.368													29	83					0	0	1	0	0
DOT1L	84444	broad.mit.edu	37	19	2210768	2210768	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:2210768C>T	uc002lvb.3	+	14	1301	c.1265C>T	c.(1264-1266)CCC>CTC	p.P422L	DOT1L_uc002lvc.1_5'Flank	NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase	422						nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACTGCGAACCCCGAGCGGAAG	0.632													16	70					0	0	1	0	0
MATK	4145	broad.mit.edu	37	19	3783123	3783123	+	Splice_Site	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:3783123C>T	uc002lyt.2	-	7	1076	c.676_splice	c.e7+1	p.A226_splice	MATK_uc002lyv.2_Splice_Site_p.A227_splice|MATK_uc002lyu.2_Splice_Site_p.A185_splice|MATK_uc010dtq.2_Splice_Site_p.A226_splice	NM_139355	NP_647612	P42679	MATK_HUMAN	megakaryocyte-associated tyrosine kinase isoform						cell proliferation|mesoderm development|positive regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(2)|ovary(1)|lung(1)|large_intestine(1)	5		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		GCGTCCCCTACCCCTGGCCAG	0.657													10	56					0	0	1	0	0
MAP2K2	5605	broad.mit.edu	37	19	4099246	4099247	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:4099246_4099247GG>AA	uc002lzk.2	-	7	1125_1126	c.871_872CC>TT	c.(871-873)CCT>TTT	p.P291F	MAP2K2_uc002lzj.2_Missense_Mutation_p.P101F	NM_030662	NP_109587	P36507	MP2K2_HUMAN	mitogen-activated protein kinase kinase 2	291	Protein kinase.|Pro-rich.				activation of MAPK activity|activation of MAPKK activity|axon guidance|epidermal growth factor receptor signaling pathway|ERK1 and ERK2 cascade|innate immune response|insulin receptor signaling pathway|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|extracellular region	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		GATGCTGTGAGGCTCTCCTTCT	0.713									Cardiofaciocutaneous_syndrome				5	7					0	0	1	0	0
CD70	970	broad.mit.edu	37	19	6586259	6586259	+	Silent	SNP	C	A	A	rs148252487		TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:6586259C>A	uc002mfi.2	-	3	504	c.354G>T	c.(352-354)ACG>ACT	p.T118T	CD70_uc010xjf.1_Silent_p.T118T	NM_001252	NP_001243	P32970	CD70_HUMAN	tumor necrosis factor ligand superfamily, member	118	Extracellular (Potential).				cell proliferation|cell-cell signaling|immune response|induction of apoptosis|signal transduction	extracellular space|integral to membrane of membrane fraction|integral to plasma membrane	cytokine activity|protease binding|tumor necrosis factor receptor binding				0						TGGAGGCCGTCGTGGAGGAGC	0.612													23	38					2.41591e-17	2.45634e-17	1	1	0
TNFSF14	8740	broad.mit.edu	37	19	6665209	6665209	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:6665209C>T	uc002mfk.1	-	5	833	c.451G>A	c.(451-453)GGT>AGT	p.G151S	TNFSF14_uc002mfj.1_Missense_Mutation_p.G115S	NM_003807	NP_003798	O43557	TNF14_HUMAN	tumor necrosis factor ligand superfamily, member	151	Extracellular (Potential).				cellular response to mechanical stimulus|immune response|induction of apoptosis|release of cytoplasmic sequestered NF-kappaB|T cell homeostasis|T cell proliferation	cytoplasm|extracellular space|integral to membrane|plasma membrane	caspase inhibitor activity|cytokine activity|tumor necrosis factor receptor binding			skin(1)	1						CAGCCCACACCGCCCAGCTGC	0.657													15	45					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6714080	6714080	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:6714080G>A	uc002mfm.2	-	7	758	c.696C>T	c.(694-696)TTC>TTT	p.F232F		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	232					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		CTATGACCTCGAAACTGGGCA	0.622													14	70					0	0	1	0	0
ACTL9	284382	broad.mit.edu	37	19	8808469	8808469	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:8808469C>T	uc002mkl.2	-	1	704	c.583G>A	c.(583-585)GTG>ATG	p.V195M		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	195						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						GTGTCCACCACCAGCCCGCTG	0.662													13	41					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9046973	9046973	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:9046973G>A	uc002mkp.2	-	5	34862	c.34658C>T	c.(34657-34659)TCT>TTT	p.S11553F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11555	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCTGTCCCAGAACTAGGGAC	0.517													10	51					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9048951	9048951	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:9048951G>A	uc002mkp.2	-	5	32884	c.32680C>T	c.(32680-32682)CCA>TCA	p.P10894S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10896	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCAGAATTGGAATAGTTGTA	0.483													47	95					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9056776	9056776	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:9056776G>A	uc002mkp.2	-	3	30874	c.30670C>T	c.(30670-30672)CCA>TCA	p.P10224S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10226	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATGTCCACTGGAATTTCAGTA	0.458													13	61					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9060381	9060381	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:9060381A>G	uc002mkp.2	-	3	27269	c.27065T>C	c.(27064-27066)GTT>GCT	p.V9022A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9024	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTTGTAAGGAACAGTGCTTGG	0.517													13	90					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9072508	9072508	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:9072508G>A	uc002mkp.2	-	3	15142	c.14938C>T	c.(14938-14940)CCT>TCT	p.P4980S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4982	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCCCCATGAGGACCTGTTTGG	0.473													40	67					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9073507	9073507	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:9073507G>A	uc002mkp.2	-	3	14143	c.13939C>T	c.(13939-13941)CCA>TCA	p.P4647S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4649	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCAGGAGTTGGTATGAATGTT	0.443													26	71					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9084790	9084790	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:9084790G>A	uc002mkp.2	-	1	7229	c.7025C>T	c.(7024-7026)TCA>TTA	p.S2342L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2342	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATTATCCAGTGAAACTGTGCT	0.463													18	21					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9088815	9088815	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:9088815T>A	uc002mkp.2	-	1	3204	c.3000A>T	c.(2998-3000)AAA>AAT	p.K1000N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1000	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGAAGTGAATTTAGAGACCA	0.483													38	212					0	0	1	0	0
C3P1	388503	broad.mit.edu	37	19	10166414	10166414	+	RNA	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:10166414C>T	uc010dwx.1	+	16		c.2007C>T				NR_027300				Synthetic construct DNA, clone: pF1KB7402, Homo sapiens LOC388503 gene, without stop codon, in Flexi system.												0						GGAGAAGGGCCCTGTGGTCAT	0.562													17	39					0	0	1	0	0
S1PR2	9294	broad.mit.edu	37	19	10335455	10335455	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:10335455G>A	uc002mnl.2	-	2	238	c.127C>T	c.(127-129)CTC>TTC	p.L43F		NM_004230	NP_004221	O95136	S1PR2_HUMAN	endothelial differentiation, sphingolipid	43	Helical; Name=1; (By similarity).				activation of MAPK activity|positive regulation of cell proliferation	integral to membrane|plasma membrane	lipid binding|lysosphingolipid and lysophosphatidic acid receptor activity			lung(1)|central_nervous_system(1)	2						GCGCAACAGAGGATGACGATG	0.557													24	141					0	0	1	0	0
ZNF443	10224	broad.mit.edu	37	19	12541096	12541097	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:12541096_12541097GG>AA	uc002mtu.2	-	4	2087_2088	c.1889_1890CC>TT	c.(1888-1890)TCC>TTT	p.S630F		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	630	C2H2-type 18.				induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						GTCTATGCAAGGAACTGAGAGA	0.401													28	131					0	0	1	0	0
ZNF709	163051	broad.mit.edu	37	19	12575513	12575513	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:12575513C>T	uc002mtv.3	-	4	1384	c.1223G>A	c.(1222-1224)CGA>CAA	p.R408Q	ZNF709_uc002mtw.3_Missense_Mutation_p.R376Q|ZNF709_uc002mtx.3_Missense_Mutation_p.R408Q	NM_152601	NP_689814	Q8N972	ZN709_HUMAN	zinc finger protein 709 isoform a	408	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTCATGCATTCGAAAGGAACT	0.408													93	167					0	0	1	0	0
OR10H3	26532	broad.mit.edu	37	19	15852997	15852997	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:15852997G>A	uc010xoq.1	+	1	795	c.795G>A	c.(793-795)AAG>AAA	p.K265K		NM_013938	NP_039226	O60404	O10H3_HUMAN	olfactory receptor, family 10, subfamily H,	265	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCAAACCCAAGGGCCTCCATT	0.507													26	161					0	0	1	0	0
AP1M1	8907	broad.mit.edu	37	19	16338446	16338446	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:16338446C>T	uc002ndu.2	+	7	934	c.761C>T	c.(760-762)TCC>TTC	p.S254F	AP1M1_uc002ndv.2_Missense_Mutation_p.S266F|AP1M1_uc010xpd.1_Missense_Mutation_p.S254F	NM_032493	NP_115882	Q9BXS5	AP1M1_HUMAN	adaptor-related protein complex 1, mu 1 subunit	254	MHD.				cellular membrane organization|endosome to melanosome transport|interspecies interaction between organisms|intracellular protein transport|melanosome organization|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding			ovary(3)|breast(1)	4						CGCACCATCTCCTTCATCCCA	0.617													62	132					0	0	1	0	0
FCHO1	23149	broad.mit.edu	37	19	17892264	17892264	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:17892264C>T	uc010ebb.2	+	21	1933	c.1744C>T	c.(1744-1746)CGT>TGT	p.R582C	FCHO1_uc002nhg.3_Missense_Mutation_p.R582C|FCHO1_uc002nhh.2_Missense_Mutation_p.R582C|FCHO1_uc010xpw.1_Missense_Mutation_p.R532C|FCHO1_uc002nhi.2_Missense_Mutation_p.R38C|FCHO1_uc002nhj.2_5'UTR	NM_001161358	NP_001154830	O14526	FCHO1_HUMAN	FCH domain only 1 isoform b	582										breast(1)	1						CTTCCAGTCTCGTTCCCTGAG	0.637													19	50					0	0	1	0	0
MAST3	23031	broad.mit.edu	37	19	18246585	18246585	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:18246585C>T	uc002nhz.3	+	17	1819	c.1819C>T	c.(1819-1821)CCA>TCA	p.P607S		NM_015016	NP_055831	O60307	MAST3_HUMAN	microtubule associated serine/threonine kinase	607	Protein kinase.						ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			large_intestine(2)|ovary(2)|stomach(1)	5						TGAGGCCCTTCCAGCAGACGC	0.572													5	12					0	0	1	0	0
MAST3	23031	broad.mit.edu	37	19	18258346	18258346	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:18258346C>T	uc002nhz.3	+	26	3306	c.3306C>T	c.(3304-3306)TCC>TCT	p.S1102S		NM_015016	NP_055831	O60307	MAST3_HUMAN	microtubule associated serine/threonine kinase	1102	Ser-rich.						ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			large_intestine(2)|ovary(2)|stomach(1)	5						CACTGTCATCCAGTGAGAGCC	0.652													4	9					0	0	1	0	0
NCAN	1463	broad.mit.edu	37	19	19359662	19359662	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:19359662G>A	uc002nlz.2	+	14	3890	c.3791G>A	c.(3790-3792)TGG>TAG	p.W1264*	NCAN_uc002nma.2_Missense_Mutation_p.G20R	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	1264	Sushi.				axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			AATGGCAAGTGGGACAGGCCC	0.473													10	63					0	0	1	0	0
KIAA0892	23383	broad.mit.edu	37	19	19456163	19456163	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:19456163C>T	uc002nmk.3	+	12	1245	c.1206C>T	c.(1204-1206)TTC>TTT	p.F402F	KIAA0892_uc002nml.3_Silent_p.F8F|KIAA0892_uc010ecd.2_Silent_p.F8F|KIAA0892_uc010ece.2_5'Flank	NM_015329	NP_056144	Q9Y6X3	SCC4_HUMAN	hypothetical protein LOC23383 precursor	402	TPR 2.				cell division|maintenance of mitotic sister chromatid cohesion	chromatin|nucleoplasm|SMC loading complex	protein N-terminus binding				0						AAGCCCAGTTCACCACGGCCC	0.642													27	79					0	0	1	0	0
LOC284441	284441	broad.mit.edu	37	19	20369244	20369244	+	Silent	SNP	T	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:20369244T>C	uc002nov.2	+	1	788	c.37T>C	c.(37-39)TTA>CTA	p.L13L		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						ACGATCAATGTTAGAAGTTAA	0.358													51	128					0	0	1	0	0
ZNF676	163223	broad.mit.edu	37	19	22363780	22363780	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:22363780G>A	uc002nqs.1	-	3	1057	c.739C>T	c.(739-741)CAT>TAT	p.H247Y		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	247	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TCTCCAGTATGAATTATCTTA	0.368													31	156					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	31025826	31025826	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:31025826C>T	uc002nsu.1	+	3	2381	c.2243C>T	c.(2242-2244)TCG>TTG	p.S748L	ZNF536_uc010edd.1_Missense_Mutation_p.S748L	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	748					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					AGCCTGGGCTCGGCCATGAAG	0.572													21	120					0	0	1	0	0
ZNF790	388536	broad.mit.edu	37	19	37309877	37309877	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:37309877T>C	uc002oew.2	-	5	1488	c.1369A>G	c.(1369-1371)AAG>GAG	p.K457E	uc002oev.1_Intron	NM_206894	NP_996777	Q6PG37	ZN790_HUMAN	zinc finger protein 790	457	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|skin(1)	2	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			AGAAAGGTCTTTCCACATTCC	0.383													21	122					0	0	1	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38600990	38600990	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:38600990G>A	uc002ohk.2	+	8	2766	c.2257G>A	c.(2257-2259)GTC>ATC	p.V753I		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	753	Rap-GAP.				regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			CATTGTCCGAGTCCACAACCC	0.597													11	42					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	39002915	39002915	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:39002915G>A	uc002oit.2	+	63	9394	c.9264G>A	c.(9262-9264)GTG>GTA	p.V3088V	RYR1_uc002oiu.2_Silent_p.V3088V|RYR1_uc002oiv.1_Silent_p.V8V|RYR1_uc010xuf.1_Silent_p.V8V	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3088	Cytoplasmic.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CTGAGATCGTGAAGGCTGGCC	0.627													12	63					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	39003011	39003011	+	Silent	SNP	C	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:39003011C>G	uc002oit.2	+	63	9490	c.9360C>G	c.(9358-9360)ACC>ACG	p.T3120T	RYR1_uc002oiu.2_Silent_p.T3120T|RYR1_uc002oiv.1_Silent_p.T40T|RYR1_uc010xuf.1_Silent_p.T40T	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3120	Cytoplasmic.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	AGGCGCGCACCCAGGTGAAAG	0.637													20	38					0	0	1	0	0
IL29	282618	broad.mit.edu	37	19	39788664	39788664	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:39788664G>A	uc002okv.2	+	3	407	c.310G>A	c.(310-312)GCC>ACC	p.A104T		NM_172140	NP_742152	Q8IU54	IL29_HUMAN	interleukin 29 precursor	104					defense response to virus|negative regulation of cell proliferation|negative regulation of interleukin-13 production|negative regulation of interleukin-5 production|negative regulation of memory T cell differentiation|negative regulation of transcription, DNA-dependent|negative regulation of type 2 immune response|positive regulation of immune response|positive regulation of interferon-gamma production|positive regulation of MHC class I biosynthetic process|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of STAT protein	extracellular space|interleukin-28 receptor complex	cytokine activity|interleukin-28 receptor binding				0	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;1.96e-27)|all cancers(26;2.05e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			GGTCCTGGAGGCCGCTGCTGG	0.662													10	56					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40412184	40412184	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:40412184G>A	uc002omp.3	-	7	3452	c.3444C>T	c.(3442-3444)GGC>GGT	p.G1148G		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1148	Cys-rich.|TIL 2.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			ACAGCGGGCAGCCGTAGGAAC	0.612													5	42					0	0	1	0	0
BCKDHA	593	broad.mit.edu	37	19	41930426	41930426	+	Silent	SNP	C	T	T	rs147021347	byFrequency	TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:41930426C>T	uc002oqq.2	+	9	1280	c.1251C>T	c.(1249-1251)CCC>CCT	p.P417P	CYP2F1_uc010xvw.1_Intron|BCKDHA_uc002oqm.3_Silent_p.P451P|BCKDHA_uc002oqr.2_Silent_p.P416P|BCKDHA_uc010xvz.1_Silent_p.P420P	NM_000709	NP_000700	P12694	ODBA_HUMAN	branched chain keto acid dehydrogenase E1, alpha	417					branched chain family amino acid catabolic process	mitochondrial alpha-ketoglutarate dehydrogenase complex	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity|alpha-ketoacid dehydrogenase activity|carboxy-lyase activity|metal ion binding|protein binding				0						AGGAGATGCCCGCCCAGCTCC	0.617													36	99					0	0	1	0	0
RABAC1	10567	broad.mit.edu	37	19	42461187	42461187	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:42461187G>A	uc002osf.2	-	4	536	c.452C>T	c.(451-453)GCC>GTC	p.A151V		NM_006423	NP_006414	Q9UI14	PRAF1_HUMAN	Rab acceptor 1	151	Helical; (By similarity).					cell junction|Golgi apparatus|integral to membrane|synaptic vesicle	identical protein binding				0						CCAGAAGACGGCCGAGCCCGC	0.657													8	60					0	0	1	0	0
MEGF8	1954	broad.mit.edu	37	19	42839288	42839288	+	Silent	SNP	C	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:42839288C>G	uc002otl.3	+	4	1295	c.660C>G	c.(658-660)GCC>GCG	p.A220A	MEGF8_uc002otm.3_5'Flank	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	220	Extracellular (Potential).					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				ACGTGAGTGCCAGGGACCCTG	0.652													6	25					0	0	1	0	0
XRCC1	7515	broad.mit.edu	37	19	44056249	44056249	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:44056249G>A	uc002owt.2	-	9	1122	c.1002C>T	c.(1000-1002)TTC>TTT	p.F334F	XRCC1_uc010xwp.1_Silent_p.F303F	NM_006297	NP_006288	P18887	XRCC1_HUMAN	X-ray repair cross complementing protein 1	334	BRCT 1.				base-excision repair|single strand break repair	nucleoplasm	damaged DNA binding|protein binding			ovary(2)|lung(2)|large_intestine(1)|prostate(1)|breast(1)	7		Prostate(69;0.0153)				GCTCGGAGCGGAAGGGGTTCT	0.647								Other_BER_factors					11	60					0	0	1	0	0
PNMAL1	55228	broad.mit.edu	37	19	46973695	46973695	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:46973695G>C	uc002peq.3	-	2	904	c.598C>G	c.(598-600)CCG>GCG	p.P200A	PNMAL1_uc002per.3_Missense_Mutation_p.P200A	NM_018215	NP_060685	Q86V59	PNML1_HUMAN	PNMA-like 1 isoform a	200											0		Ovarian(192;0.00965)|all_neural(266;0.0459)		OV - Ovarian serous cystadenocarcinoma(262;0.000166)|all cancers(93;0.0014)|GBM - Glioblastoma multiforme(486;0.0421)|Epithelial(262;0.0427)		GCAAGCCCCGGTTCTTTCTTC	0.597													15	80					0	0	1	0	0
SULT2B1	6820	broad.mit.edu	37	19	49079245	49079245	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:49079245C>T	uc002pjl.2	+	2	200	c.119C>T	c.(118-120)CCC>CTC	p.P40L	SULT2B1_uc002pjm.2_Missense_Mutation_p.P25L	NM_177973	NP_814444	O00204	ST2B1_HUMAN	sulfotransferase family, cytosolic, 2B, member 1	40					3'-phosphoadenosine 5'-phosphosulfate metabolic process|steroid metabolic process|xenobiotic metabolic process	cytosol	alcohol sulfotransferase activity|protein binding|steroid sulfotransferase activity			skin(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000115)|all cancers(93;0.000147)|GBM - Glioblastoma multiforme(486;0.00707)|Epithelial(262;0.0178)		GTCCCCTTCCCCGTCGGCCTG	0.517													38	91					0	0	1	0	0
CCDC155	147872	broad.mit.edu	37	19	49920509	49920509	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:49920509C>T	uc002pnm.1	+	19	1707	c.1533C>T	c.(1531-1533)CCC>CCT	p.P511P	CCDC155_uc010emx.1_Silent_p.P482P	NM_144688	NP_653289	Q8N6L0	CC155_HUMAN	coiled-coil domain containing 155	511						integral to membrane	calcium ion binding			ovary(1)|central_nervous_system(1)	2						TCTGCCTGCCCCCACAGCGGC	0.652													3	15					0	0	1	0	0
BCL2L12	83596	broad.mit.edu	37	19	50169104	50169104	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:50169104C>T	uc002ppa.2	+	1	706	c.24C>T	c.(22-24)TTC>TTT	p.F8F	IRF3_uc002pot.1_5'Flank|IRF3_uc010end.1_5'UTR|IRF3_uc002pox.1_5'UTR|IRF3_uc002poy.1_5'UTR|IRF3_uc002pou.2_5'UTR|IRF3_uc002pov.2_5'UTR|IRF3_uc002pow.2_5'UTR|IRF3_uc002poz.1_5'UTR|IRF3_uc010ene.1_5'Flank|BCL2L12_uc002ppb.2_Silent_p.F8F	NM_138639	NP_619580	Q9HB09	B2L12_HUMAN	BCL2-like 12 isoform 1	8					apoptosis					central_nervous_system(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.000681)|GBM - Glioblastoma multiforme(134;0.0214)		CTGGGCTGTTCCCGCCCCTAT	0.542													25	48					0	0	1	0	0
KLK12	43849	broad.mit.edu	37	19	51535239	51535239	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:51535239G>A	uc002pvg.1	-	3	470	c.350C>T	c.(349-351)CCC>CTC	p.P117L	KLK12_uc010ycp.1_RNA|KLK12_uc010ycq.1_Intron|KLK12_uc010ycr.1_Intron|KLK12_uc010ycs.1_Intron|KLK12_uc002pvh.1_Missense_Mutation_p.P117L|KLK12_uc002pvi.1_Missense_Mutation_p.P117L|KLK12_uc002pvj.1_Intron	NM_145894	NP_665901	Q9UKR0	KLK12_HUMAN	kallikrein 12 isoform 2	117	Peptidase S1.				proteolysis	extracellular region|soluble fraction	serine-type endopeptidase activity			ovary(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00399)		TACGCGGACGGGCAGGCGCAG	0.677													12	36					0	0	1	0	0
ZNF702P	79986	broad.mit.edu	37	19	53472914	53472914	+	RNA	SNP	A	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:53472914A>G	uc002qan.3	-	4		c.1587T>C				NR_003578				Synthetic construct DNA, clone: pF1KB9679, Homo sapiens ZNF702 gene for zinc finger protein 702, without stop codon, in Flexi system.												0						TTTGATTTTCAATTAAAAACC	0.338													4	37					0	0	1	0	0
ZNF665	79788	broad.mit.edu	37	19	53668305	53668305	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:53668305G>A	uc010eqm.1	-	4	1538	c.1438C>T	c.(1438-1440)CAT>TAT	p.H480Y		NM_024733	NP_079009	Q9H7R5	ZN665_HUMAN	zinc finger protein 665	415	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0196)		TCTCCAGAATGAATTCCCCGA	0.418													24	120					0	0	1	0	0
KIR3DL3	115653	broad.mit.edu	37	19	55246750	55246750	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:55246750G>A	uc002qgu.1	+	6	998	c.980G>A	c.(979-981)GGG>GAG	p.G327E	KIR2DL3_uc002qgv.2_Intron	NM_153443	NP_703144	Q8N743	KI3L3_HUMAN	killer cell immunoglobulin-like receptor, three	327	Helical; (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(193;0.0192)		GTTCTGATTGGGACCTCAGTG	0.458													35	76					0	0	1	0	0
KIR2DS4	3809	broad.mit.edu	37	19	55350936	55350936	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:55350936G>A	uc002qhm.1	+	4	470	c.424G>A	c.(424-426)GGA>AGA	p.G142R	KIR2DS4_uc010yfj.1_Missense_Mutation_p.G135R|KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Missense_Mutation_p.G142R|KIR2DS4_uc002qhn.1_Intron	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	142	Extracellular (Potential).|Ig-like C2-type 2.					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		GGTTCAGGCAGGAGAGAATGT	0.577													77	74					0	0	1	0	0
NLRP11	204801	broad.mit.edu	37	19	56319229	56319229	+	Missense_Mutation	SNP	G	A	A	rs141366900		TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:56319229G>A	uc010ygf.1	-	6	2704	c.1993C>T	c.(1993-1995)CGC>TGC	p.R665C	NLRP11_uc002qlz.2_Intron|NLRP11_uc002qmb.2_Missense_Mutation_p.R566C|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	665							ATP binding	p.R665C(1)		ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		TTGAGTGTGCGAAGTTTACAG	0.423													22	173					0	0	1	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701919	56701919	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:56701919C>T	uc010ygh.1	-	4	765	c.765G>A	c.(763-765)AAG>AAA	p.K255K		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	255					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TCTGGGGTTCCTTCCCCTCCT	0.488													38	87					0	0	1	0	0
NBAS	51594	broad.mit.edu	37	2	15555736	15555736	+	Silent	SNP	A	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:15555736A>G	uc002rcc.1	-	25	2897	c.2871T>C	c.(2869-2871)TAT>TAC	p.Y957Y	NBAS_uc010exl.1_Intron|NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	957										ovary(2)|liver(1)|skin(1)	4						AAGTTACTAAATATTCTTTTA	0.378													42	75					0	0	1	0	0
DNMT3A	1788	broad.mit.edu	37	2	25505414	25505414	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:25505414G>A	uc002rgc.2	-	4	601	c.344C>T	c.(343-345)CCA>CTA	p.P115L	DNMT3A_uc002rgd.2_Missense_Mutation_p.P115L|DNMT3A_uc010eyi.2_RNA|DNMT3A_uc002rge.2_Missense_Mutation_p.P112L|DNMT3A_uc002rgf.2_Missense_Mutation_p.P115L	NM_022552	NP_072046	Q9Y6K1	DNM3A_HUMAN	DNA cytosine methyltransferase 3 alpha isoform	115					regulation of gene expression by genetic imprinting	cytoplasm|euchromatin|nuclear matrix	DNA (cytosine-5-)-methyltransferase activity|DNA binding|metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(133)|lung(4)|ovary(3)	140	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCCCTCTGCTGGGGCCCCGCC	0.657			Mis|F|N|S		AML								14	35					0	0	1	0	0
EPT1	85465	broad.mit.edu	37	2	26609386	26609386	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:26609386C>T	uc010ykz.1	+	9	1224	c.1077C>T	c.(1075-1077)ATC>ATT	p.I359I	EPT1_uc010eyl.1_RNA	NM_033505	NP_277040	Q9C0D9	EPT1_HUMAN	selenoprotein I	359	Helical; (Potential).				phospholipid biosynthetic process	integral to membrane	ethanolaminephosphotransferase activity|metal ion binding				0						TGGCCCACATCCATTATGGAG	0.428													14	38					0	0	1	0	0
C2orf39	92749	broad.mit.edu	37	2	26676394	26676394	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:26676394C>T	uc002rhg.2	+	14	1970	c.1896C>T	c.(1894-1896)TTC>TTT	p.F632F		NM_145038	NP_659475	Q96MC2	CC164_HUMAN	hypothetical protein LOC92749	632											0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGGAGGCCTTCGTCATGGGTC	0.502													20	28					0	0	1	0	0
IFT172	26160	broad.mit.edu	37	2	27677285	27677285	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:27677285C>T	uc002rku.2	-	32	3517	c.3466G>A	c.(3466-3468)GGT>AGT	p.G1156S	IFT172_uc010ezb.2_5'Flank	NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	1156	TPR 9.				cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					TCGAATTTACCCTACAGGGAG	0.522													20	89					0	0	1	0	0
CAPN13	92291	broad.mit.edu	37	2	30966427	30966427	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:30966427G>A	uc002rnn.2	-	12	1443	c.1267C>T	c.(1267-1269)CCA>TCA	p.P423S	CAPN13_uc002rnm.2_RNA|CAPN13_uc002rno.2_5'UTR	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	423					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					AACACGGGTGGAAATTTCTCC	0.473													15	87					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31604561	31604561	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:31604561G>A	uc002rnv.1	-	12	1149	c.1070C>T	c.(1069-1071)CCC>CTC	p.P357L		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	357	FAD-binding PCMH-type.				purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	GTCGGAGATGGGGCTGGCAGT	0.582													5	17					0	0	1	0	0
ALMS1	7840	broad.mit.edu	37	2	73718592	73718592	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:73718592C>T	uc002sje.1	+	12	9620	c.9509C>T	c.(9508-9510)TCC>TTC	p.S3170F	ALMS1_uc002sjf.1_Missense_Mutation_p.S3126F|ALMS1_uc002sjg.2_Missense_Mutation_p.S2556F|ALMS1_uc002sjh.1_Missense_Mutation_p.S2556F	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	3168					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						GAAGGACATTCCAATCCAGAG	0.403													27	49					0	0	1	0	0
C2orf65	130951	broad.mit.edu	37	2	74842228	74842229	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:74842228_74842229GG>AA	uc002smy.2	-	3	405_406	c.288_289CC>TT	c.(286-291)CTCCGC>CTTTGC	p.R97C	C2orf65_uc010ysa.1_Missense_Mutation_p.R97C|C2orf65_uc002smz.2_Missense_Mutation_p.R97C	NM_138804	NP_620159	Q8TC57	CB065_HUMAN	hypothetical protein LOC130951	97					chromatin assembly|female gamete generation|RNA processing|spermatogenesis	integral to membrane				ovary(1)|pancreas(1)	2						TGTAACATGCGGAGTTCTGAGA	0.47													31	122					0	0	1	0	0
SFTPB	6439	broad.mit.edu	37	2	85894911	85894911	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:85894911G>A	uc002sqh.2	-	2	92	c.86C>T	c.(85-87)TCC>TTC	p.S29F	SFTPB_uc002sqi.2_Missense_Mutation_p.S41F|SFTPB_uc002sqj.2_Missense_Mutation_p.S29F	NM_198843	NP_942140	P07988	PSPB_HUMAN	surfactant, pulmonary-associated protein B	29	Saposin A-type.				organ morphogenesis|respiratory gaseous exchange|sphingolipid metabolic process	extracellular space|lysosome				ovary(1)|central_nervous_system(1)	2						ACAGGCCAAGGATGAGGTGGT	0.577													16	50					0	0	1	0	0
INPP4A	3631	broad.mit.edu	37	2	99156043	99156043	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:99156043C>T	uc002syy.2	+	10	1116	c.723C>T	c.(721-723)AAC>AAT	p.N241N	INPP4A_uc010yvj.1_Silent_p.N241N|INPP4A_uc010yvk.1_Silent_p.N241N|INPP4A_uc002syx.2_Silent_p.N241N|INPP4A_uc010fik.2_Intron	NM_001134224	NP_001127696	Q96PE3	INP4A_HUMAN	inositol polyphosphate-4-phosphatase, type 1	241					signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			kidney(1)	1						CTGATGGTAACCATTTGCGGA	0.577													14	65					0	0	1	0	0
MFSD9	84804	broad.mit.edu	37	2	103347521	103347521	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:103347521G>A	uc002tcb.2	-	3	328	c.260C>T	c.(259-261)TCC>TTC	p.S87F	MFSD9_uc010fja.2_RNA	NM_032718	NP_116107	Q8NBP5	MFSD9_HUMAN	major facilitator superfamily domain containing	87	Helical; (Potential).				transmembrane transport	integral to membrane|plasma membrane	transporter activity			ovary(2)|breast(2)	4						AATGCCATAGGAGGAGCCTGT	0.338													27	59					0	0	1	0	0
TGFBRAP1	9392	broad.mit.edu	37	2	105924612	105924612	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:105924612G>A	uc002tcq.2	-	2	231	c.147C>T	c.(145-147)TTC>TTT	p.F49F	TGFBRAP1_uc002tcr.3_Silent_p.F49F	NM_004257	NP_004248	Q8WUH2	TGFA1_HUMAN	transforming growth factor, beta receptor	49	CNH.				regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|membrane	SMAD binding|small GTPase regulator activity|transforming growth factor beta receptor binding			central_nervous_system(1)|skin(1)	2						CCTCCAACAGGAAGTGGTAGA	0.607													8	34					0	0	1	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107450511	107450511	+	Silent	SNP	A	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:107450511A>G	uc002tdq.2	-	3	1154	c.1035T>C	c.(1033-1035)AAT>AAC	p.N345N	ST6GAL2_uc002tdr.2_Silent_p.N345N|ST6GAL2_uc002tds.3_Silent_p.N345N	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	345	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						TTACCTGCGAATTAATGATGC	0.398													21	111					0	0	1	0	0
SLC5A7	60482	broad.mit.edu	37	2	108627088	108627088	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:108627088G>A	uc002tdv.2	+	9	1790	c.1514G>A	c.(1513-1515)GGA>GAA	p.G505E	SLC5A7_uc010ywm.1_Missense_Mutation_p.G258E|SLC5A7_uc010fjj.2_Missense_Mutation_p.G505E|SLC5A7_uc010ywn.1_Missense_Mutation_p.G392E	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	505	Cytoplasmic (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	TTTGAAAGTGGAACCTTGCCA	0.313													23	59					0	0	1	0	0
SULT1C2	6819	broad.mit.edu	37	2	108910774	108910775	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:108910774_108910775CC>TT	uc002tdy.2	+	3	694_695	c.241_242CC>TT	c.(241-243)CCT>TTT	p.P81F	SULT1C2_uc010ywp.1_Missense_Mutation_p.L17F|SULT1C2_uc002tdx.2_Missense_Mutation_p.P81F|SULT1C2_uc010ywq.1_Missense_Mutation_p.P81F	NM_001056	NP_001047	O00338	ST1C2_HUMAN	sulfotransferase family, cytosolic, 1C, member 1	81					3'-phosphoadenosine 5'-phosphosulfate metabolic process|amine metabolic process|sulfation|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	sulfotransferase activity			ovary(1)	1						ACACCGCCATCCTTTCATTGAG	0.396													20	111					0	0	1	0	0
POLR1B	84172	broad.mit.edu	37	2	113308578	113308578	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:113308578A>G	uc002thw.2	+	5	1341	c.761A>G	c.(760-762)AAG>AGG	p.K254R	POLR1B_uc010fkn.2_Missense_Mutation_p.K198R|POLR1B_uc002thx.2_Missense_Mutation_p.K115R|POLR1B_uc010fko.2_Missense_Mutation_p.K254R|POLR1B_uc010fkp.2_Intron|POLR1B_uc010yxn.1_Missense_Mutation_p.K292R|POLR1B_uc002thy.2_Missense_Mutation_p.K115R|POLR1B_uc010yxo.1_Missense_Mutation_p.K31R	NM_019014	NP_061887	Q9H9Y6	RPA2_HUMAN	RNA polymerase I polypeptide B isoform 1	254					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(1)	1						TTTGCACTTAAGGTATGACTT	0.353													61	173					0	0	1	0	0
DPP10	57628	broad.mit.edu	37	2	116535379	116535379	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:116535379G>A	uc002tla.1	+	15	1787	c.1330G>A	c.(1330-1332)GAA>AAA	p.E444K	DPP10_uc002tlb.1_Missense_Mutation_p.E394K|DPP10_uc002tlc.1_Missense_Mutation_p.E440K|DPP10_uc002tle.2_Missense_Mutation_p.E448K|DPP10_uc002tlf.1_Missense_Mutation_p.E437K	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	444	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						TCTGAGCACTGAATCTTCTCC	0.408													28	57					0	0	1	0	0
CFC1B	653275	broad.mit.edu	37	2	131356259	131356259	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:131356259C>T	uc002tro.1	-	3	594	c.203G>A	c.(202-204)TGG>TAG	p.W68*		NM_001079530	NP_001072998	P0CG36	CFC1B_HUMAN	cripto, FRL-1, cryptic family 1B	68					gastrulation	extracellular region					0	Colorectal(110;0.1)					CTCCGGCCCCCAGCCCTCGGC	0.627													11	98					0	0	1	0	0
YSK4	80122	broad.mit.edu	37	2	135745002	135745002	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:135745002C>T	uc002tue.1	-	7	1471	c.1440G>A	c.(1438-1440)AGG>AGA	p.R480R	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Silent_p.R367R|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Silent_p.R208R|YSK4_uc002tui.3_Silent_p.R497R	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	480							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		GAGGCACCATCCTACTCATTT	0.443													23	91					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	137814011	137814011	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:137814011G>A	uc002tva.1	+	2	68	c.68G>A	c.(67-69)GGA>GAA	p.G23E	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_5'UTR	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AGGTGTACAGGAGACTGTGGT	0.483													7	54					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138030126	138030126	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:138030126C>T	uc002tva.1	+	10	2197	c.2197C>T	c.(2197-2199)CGA>TGA	p.R733*	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Nonsense_Mutation_p.R623*	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AAAACAGTCTCGATACAGAAT	0.398													11	26					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138400102	138400102	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:138400102G>A	uc002tva.1	+	20	3757	c.3757G>A	c.(3757-3759)GAA>AAA	p.E1253K	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AACCCAAGGAGAAGGACGGCC	0.512													30	111					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138414689	138414689	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:138414689G>A	uc002tva.1	+	23	4247	c.4247G>A	c.(4246-4248)CGA>CAA	p.R1416Q	THSD7B_uc010zbj.1_RNA	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AATAACGAACGAACTGTATGG	0.413													9	45					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141986800	141986800	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:141986800C>T	uc002tvj.1	-	6	1774	c.802G>A	c.(802-804)GGA>AGA	p.G268R	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	268	Extracellular (Potential).|LDL-receptor class B 1.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GTTAATCCTCCTGCTTTTGTT	0.294										TSP Lung(27;0.18)			23	100					0	0	1	0	0
GALNT13	114805	broad.mit.edu	37	2	155102325	155102325	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:155102325G>A	uc002tyr.3	+	7	1254	c.687G>A	c.(685-687)AGG>AGA	p.R229R	GALNT13_uc002tyt.3_Silent_p.R229R|GALNT13_uc010foc.1_Silent_p.R48R|GALNT13_uc010fod.2_5'UTR	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	229	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						TTCTCTGCAGGAAAACGGTTG	0.318													17	87					0	0	1	0	0
SLC4A10	57282	broad.mit.edu	37	2	162661100	162661100	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:162661100C>T	uc002ubx.3	+	3	456	c.272C>T	c.(271-273)TCT>TTT	p.S91F	SLC4A10_uc010fpa.1_Missense_Mutation_p.S103F|SLC4A10_uc010zcr.1_RNA|SLC4A10_uc002uby.3_Missense_Mutation_p.S91F|SLC4A10_uc010zcs.1_Missense_Mutation_p.S102F	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	91	Cytoplasmic (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						GAGTCACCTTCTTTTGGTAAG	0.348													7	17					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166897748	166897748	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:166897748C>T	uc010zcz.1	-	13	2393	c.2375G>A	c.(2374-2376)GGA>GAA	p.G792E	SCN1A_uc002udo.3_Missense_Mutation_p.G672E|SCN1A_uc010fpk.2_Missense_Mutation_p.G644E	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	803	Helical; Name=S2 of repeat II; (By similarity).|II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TACCAAGTTTCCTACTGTAAG	0.363													13	68					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167160770	167160770	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:167160770C>T	uc010fpl.2	-	6	1007	c.666G>A	c.(664-666)TTG>TTA	p.L222L	SCN9A_uc002udr.1_Silent_p.L93L|SCN9A_uc002uds.1_Intron|SCN9A_uc002udt.1_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	222	I.|Helical; Voltage-sensor; Name=S4 of repeat I; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	AAATAGTTTTCAAAGCTCTCA	0.348													19	35					0	0	1	0	0
G6PC2	57818	broad.mit.edu	37	2	169764269	169764269	+	Missense_Mutation	SNP	C	T	T	rs147360987	byFrequency	TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:169764269C>T	uc002uem.2	+	5	840	c.748C>T	c.(748-750)CAC>TAC	p.H250Y	G6PC2_uc002uen.2_3'UTR|G6PC2_uc010fpv.2_Missense_Mutation_p.H134Y	NM_021176	NP_066999	Q9NQR9	G6PC2_HUMAN	islet-specific glucose-6-phosphatase-related	250	Lumenal (Potential).				gluconeogenesis|glucose homeostasis|glucose transport|regulation of insulin secretion|transmembrane transport	endoplasmic reticulum membrane|integral to membrane	glucose-6-phosphatase activity			pancreas(1)	1						CGACTGGATCCACATTGACAC	0.527													20	73					0	0	1	0	0
SP3	6670	broad.mit.edu	37	2	174820388	174820388	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:174820388C>T	uc002uig.2	-	4	1016	c.852G>A	c.(850-852)CAG>CAA	p.Q284Q	SP3_uc002uie.2_Silent_p.Q216Q|SP3_uc002uif.2_Silent_p.Q231Q|SP3_uc010zel.1_Silent_p.Q281Q	NM_003111	NP_003102	Q02447	SP3_HUMAN	Sp3 transcription factor isoform 1	284					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	PML body	protein binding|zinc ion binding		EWSR1/SP3(3)	soft_tissue(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.185)			CAGTCATTGTCTGAGAACTGC	0.443													31	148					0	0	1	0	0
AGPS	8540	broad.mit.edu	37	2	178372732	178372732	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:178372732C>T	uc002ull.2	+	16	1627	c.1580C>T	c.(1579-1581)TCT>TTT	p.S527F	AGPS_uc010zfb.1_Missense_Mutation_p.S437F	NM_003659	NP_003650	O00116	ADAS_HUMAN	alkyldihydroxyacetone phosphate synthase	527					ether lipid biosynthetic process	peroxisomal matrix|peroxisomal membrane|plasma membrane	alkylglycerone-phosphate synthase activity|flavin adenine dinucleotide binding|oxidoreductase activity			ovary(2)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0018)|Epithelial(96;0.00919)|all cancers(119;0.0358)			TTAGGAGAATCTTTTGAGACT	0.323													20	83					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179432818	179432818	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:179432818G>A	uc010zfg.1	-	275	70561	c.70337C>T	c.(70336-70338)CCA>CTA	p.P23446L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P17141L|TTN_uc010zfi.1_Missense_Mutation_p.P17074L|TTN_uc010zfj.1_Missense_Mutation_p.P16949L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24373							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTGTTGACTGGTTCATGCCA	0.443													10	80					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179577224	179577224	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:179577224G>A	uc010zfg.1	-	92	23917	c.23693C>T	c.(23692-23694)TCG>TTG	p.S7898L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S4559L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8825							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCAGGTAACCGAAATGGGAGG	0.423													21	37					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179590734	179590734	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:179590734G>A	uc010zfg.1	-	67	16807	c.16583C>T	c.(16582-16584)ACC>ATC	p.T5528I	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.T2189I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6455							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTTTTAAGGGTTTCTACTAT	0.403													8	45					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179637892	179637892	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:179637892C>T	uc010zfg.1	-	33	8023	c.7799G>A	c.(7798-7800)GGA>GAA	p.G2600E	TTN_uc010zfh.1_Missense_Mutation_p.G2554E|TTN_uc010zfi.1_Missense_Mutation_p.G2554E|TTN_uc010zfj.1_Missense_Mutation_p.G2554E|TTN_uc002unb.2_Missense_Mutation_p.G2600E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2600							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTGTATTTTCCTTCATCATC	0.313													22	42					0	0	1	0	0
CERKL	375298	broad.mit.edu	37	2	182423343	182423343	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:182423343C>T	uc002unx.2	-	6	949	c.848G>A	c.(847-849)CGA>CAA	p.R283Q	CERKL_uc002uny.2_Missense_Mutation_p.R257Q|CERKL_uc010zfm.1_Missense_Mutation_p.R239Q|CERKL_uc002unz.2_Missense_Mutation_p.R5Q|CERKL_uc002uoa.2_Intron|CERKL_uc002uob.2_Missense_Mutation_p.R5Q|CERKL_uc002uoc.2_Intron|CERKL_uc010frk.2_RNA|CERKL_uc002uod.1_Missense_Mutation_p.R52Q|CERKL_uc002uoe.2_Missense_Mutation_p.R257Q	NM_001030311	NP_001025482	Q49MI3	CERKL_HUMAN	ceramide kinase-like isoform b	283	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis	endoplasmic reticulum|endoplasmic reticulum|Golgi apparatus|Golgi apparatus|nucleolus|nucleolus	diacylglycerol kinase activity			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.088)			AGTCAGGATTCGGTCTGTTTC	0.488													21	48					0	0	1	0	0
PDE1A	5136	broad.mit.edu	37	2	183032982	183032982	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:183032982G>A	uc002uos.2	-	15	1684	c.1600C>T	c.(1600-1602)CAT>TAT	p.H534Y	PDE1A_uc010zfp.1_Intron|PDE1A_uc002uoq.1_Intron|PDE1A_uc010zfq.1_Intron|PDE1A_uc002uor.2_Missense_Mutation_p.H518Y|PDE1A_uc002uou.2_Missense_Mutation_p.H500Y	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	534					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			GTTTACTGATGAATAAACTCA	0.338													22	48					0	0	1	0	0
ANKAR	150709	broad.mit.edu	37	2	190593448	190593448	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:190593448G>A	uc002uqw.1	+	14	2881	c.2881G>A	c.(2881-2883)GGG>AGG	p.G961R	ANKAR_uc002uqu.2_RNA|ANKAR_uc002uqx.1_RNA|ANKAR_uc002uqy.1_Missense_Mutation_p.G128R	NM_144708	NP_653309	Q7Z5J8	ANKAR_HUMAN	ankyrin and armadillo repeat containing	1032						integral to membrane	binding			ovary(2)|pancreas(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0256)|all cancers(119;0.0744)			AATATGTGAAGGGAATGGAAT	0.413													11	91					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215884366	215884366	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:215884366G>A	uc002vew.2	-	12	1662	c.1442C>T	c.(1441-1443)ACC>ATC	p.T481I	ABCA12_uc002vev.2_Missense_Mutation_p.T163I|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	481					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TGCTATTTCGGTGCCCAGCTC	0.428													10	45					0	0	1	0	0
FN1	2335	broad.mit.edu	37	2	216288916	216288916	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:216288916G>A	uc002vfa.2	-	8	1435	c.1169C>T	c.(1168-1170)TCG>TTG	p.S390L	FN1_uc002vfb.2_Missense_Mutation_p.S390L|FN1_uc002vfc.2_Missense_Mutation_p.S390L|FN1_uc002vfd.2_Missense_Mutation_p.S390L|FN1_uc002vfe.2_Missense_Mutation_p.S390L|FN1_uc002vff.2_Missense_Mutation_p.S390L|FN1_uc002vfg.2_Missense_Mutation_p.S390L|FN1_uc002vfh.2_Missense_Mutation_p.S390L|FN1_uc002vfi.2_Missense_Mutation_p.S390L|FN1_uc002vfj.2_Missense_Mutation_p.S390L|FN1_uc002vfl.2_Missense_Mutation_p.S390L	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	390	Fibronectin type-II 1.|Collagen-binding.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTCATAATTCGAAGTTGTGCT	0.512													46	114					0	0	1	0	0
SLC4A3	6508	broad.mit.edu	37	2	220504278	220504278	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:220504278C>T	uc002vmp.3	+	20	3367	c.3098C>T	c.(3097-3099)TCC>TTC	p.S1033F	SLC4A3_uc002vmo.3_Missense_Mutation_p.S1060F|SLC4A3_uc010fwm.2_Missense_Mutation_p.S583F	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	1033	Helical; (Potential).|Membrane (anion exchange).				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CTCATTGGCTCCCTGGGGGGG	0.652													5	58					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227946898	227946898	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:227946898C>T	uc010zlt.1	-	23	2283	c.1629G>A	c.(1627-1629)AAG>AAA	p.K543K		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	543	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		AGGCACCATGCTTTCCCTTGG	0.413													46	93					0	0	1	0	0
COL4A3	1285	broad.mit.edu	37	2	228169718	228169718	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:228169718G>A	uc002vom.1	+	47	4333	c.4171G>A	c.(4171-4173)GGT>AGT	p.G1391S	COL4A3_uc002von.1_Missense_Mutation_p.G1391S|COL4A3_uc002voo.1_Missense_Mutation_p.G1391S|COL4A3_uc002vop.1_Missense_Mutation_p.G1391S|uc002voq.1_Intron|uc002vor.1_Intron|COL4A3_uc010fxf.1_5'Flank	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	1391	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		TGGGCCAAGAGGTAAGCCAGG	0.383													6	34					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228881601	228881601	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:228881601G>A	uc002vpq.2	-	7	4016	c.3969C>T	c.(3967-3969)ATC>ATT	p.I1323I	SPHKAP_uc002vpp.2_Silent_p.I1323I|SPHKAP_uc010zlx.1_Silent_p.I1323I	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1323						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CATCCACAATGATTTTGTTCT	0.493													30	53					0	0	1	0	0
DNER	92737	broad.mit.edu	37	2	230341907	230341907	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:230341907C>T	uc002vpv.2	-	7	1357	c.1210G>A	c.(1210-1212)GGA>AGA	p.G404R	DNER_uc010zly.1_Missense_Mutation_p.G132R	NM_139072	NP_620711	Q8NFT8	DNER_HUMAN	delta-notch-like EGF repeat-containing	404	Extracellular (Potential).|EGF-like 5.				central nervous system development|endocytosis|neuron migration|Notch signaling pathway|synapse assembly	dendrite|early endosome|integral to membrane|plasma membrane	calcium ion binding|clathrin binding|transmembrane receptor activity			lung(5)|ovary(2)|skin(1)	8		all_lung(227;0.00413)|Renal(207;0.0113)|Lung NSC(271;0.0211)|all_hematologic(139;0.105)|Acute lymphoblastic leukemia(138;0.175)		Epithelial(121;1.4e-11)|all cancers(144;7.7e-09)|LUSC - Lung squamous cell carcinoma(224;0.034)|Lung(119;0.0375)		CATGTTGCTCCATTTCTGCAT	0.358													23	40					0	0	1	0	0
ECEL1	9427	broad.mit.edu	37	2	233349799	233349799	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:233349799G>A	uc002vsv.2	-	4	1063	c.858C>T	c.(856-858)ATC>ATT	p.I286I	ECEL1_uc010fya.1_Silent_p.I286I|ECEL1_uc010fyb.1_5'UTR	NM_004826	NP_004817	O95672	ECEL1_HUMAN	endothelin converting enzyme-like 1	286	Lumenal (Potential).			I -> V (in Ref. 1; CAA76113).	neuropeptide signaling pathway|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity			central_nervous_system(2)	2		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000771)|Lung(119;0.00213)|LUSC - Lung squamous cell carcinoma(224;0.00746)		ATGCTGCCAGGATCTGCACCA	0.652													15	20					0	0	1	0	0
CHRND	1144	broad.mit.edu	37	2	233394675	233394675	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:233394675C>T	uc002vsw.2	+	7	650	c.646C>T	c.(646-648)CGG>TGG	p.R216W	CHRND_uc010zmg.1_Missense_Mutation_p.R201W|CHRND_uc010fyc.2_Missense_Mutation_p.R89W|CHRND_uc010zmh.1_Intron	NM_000751	NP_000742	Q07001	ACHD_HUMAN	nicotinic acetylcholine receptor delta	216	Extracellular (Potential).				muscle contraction|musculoskeletal movement|neuromuscular process|skeletal muscle tissue growth|synaptic transmission	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)|breast(1)|skin(1)	3		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.89e-16)|BRCA - Breast invasive adenocarcinoma(100;0.00078)|Lung(119;0.00579)|LUSC - Lung squamous cell carcinoma(224;0.00754)		GATAGTCCACCGGCCGGCCAG	0.647													13	72					0	0	1	0	0
ASB18	401036	broad.mit.edu	37	2	237172851	237172851	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:237172851C>T	uc010znh.1	-	1	138	c.138G>A	c.(136-138)GTG>GTA	p.V46V		NM_212556	NP_997721	Q6ZVZ8	ASB18_HUMAN	ankyrin repeat and SOCS box-containing 18	46					intracellular signal transduction					ovary(1)	1		all_hematologic(139;0.00615)|Renal(207;0.00963)|Breast(86;0.0126)|Acute lymphoblastic leukemia(138;0.0815)		Epithelial(121;2.04e-26)|OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(100;2.88e-05)|Lung(119;0.000383)|LUSC - Lung squamous cell carcinoma(224;0.00644)|GBM - Glioblastoma multiforme(43;0.244)		CCAGTTCTATCACAGCGTCCA	0.512													9	25					0	0	1	0	0
IQCA1	79781	broad.mit.edu	37	2	237308114	237308114	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:237308114C>T	uc002vvz.1	-	9	1334	c.1152G>A	c.(1150-1152)TGG>TGA	p.W384*	IQCA1_uc002vwb.2_Nonsense_Mutation_p.W391*|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Nonsense_Mutation_p.W343*	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	384	Lys-rich.						ATP binding			ovary(1)	1						GTGACATTTTCCATTTTTCGT	0.458													15	70					0	0	1	0	0
ESPNL	339768	broad.mit.edu	37	2	239025592	239025592	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:239025592G>A	uc002vxq.3	+	5	1014	c.904G>A	c.(904-906)GAA>AAA	p.E302K	ESPNL_uc010fyw.2_Intron	NM_194312	NP_919288	Q6ZVH7	ESPNL_HUMAN	espin-like	302										pancreas(1)	1		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		CCTGCGGGATGAAGATGGTTA	0.657													7	32					0	0	1	0	0
MTERFD2	130916	broad.mit.edu	37	2	242038948	242038948	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr2:242038948A>G	uc002wan.1	-	1	963	c.470T>C	c.(469-471)ATT>ACT	p.I157T	MTERFD2_uc010zoj.1_Intron|MTERFD2_uc010zok.1_Missense_Mutation_p.I128T	NM_182501	NP_872307	Q7Z6M4	MTER2_HUMAN	MTERF domain containing 2	128										ovary(1)	1		all_cancers(19;4.67e-31)|all_epithelial(40;8.67e-13)|Breast(86;0.000141)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;2.47e-32)|all cancers(36;1.79e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.59e-14)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;2.81e-06)|Lung(119;0.000509)|LUSC - Lung squamous cell carcinoma(224;0.00442)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0886)		AAATTCTGAAATGATGTCCAG	0.448													64	118					0	0	1	0	0
SIRPG	55423	broad.mit.edu	37	20	1617037	1617037	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr20:1617037C>T	uc002wfm.1	-	3	610	c.545G>A	c.(544-546)TGG>TAG	p.W182*	SIRPG_uc002wfn.1_Nonsense_Mutation_p.W182*|SIRPG_uc002wfo.1_Intron|uc002wfp.1_Intron	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	182	Extracellular (Potential).|Ig-like C1-type 1.				blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding	p.W182R(1)		ovary(1)	1						ATTTTTGAACCATTTCAGGGT	0.567													26	95					0	0	1	0	0
CDC25B	994	broad.mit.edu	37	20	3784082	3784083	+	Missense_Mutation	DNP	CC	TT	TT	rs141229949		TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr20:3784082_3784083CC>TT	uc002wjn.2	+	14	2166_2167	c.1388_1389CC>TT	c.(1387-1389)GCC>GTT	p.A463V	CDC25B_uc010zqk.1_Missense_Mutation_p.A399V|CDC25B_uc010zql.1_Missense_Mutation_p.A385V|CDC25B_uc010zqm.1_Missense_Mutation_p.A372V|CDC25B_uc002wjl.2_Missense_Mutation_p.A351V|CDC25B_uc002wjm.2_Missense_Mutation_p.A351V|CDC25B_uc002wjo.2_Missense_Mutation_p.A449V|CDC25B_uc002wjp.2_Missense_Mutation_p.A422V|CDC25B_uc002wjq.2_Missense_Mutation_p.A263V|CDC25B_uc010gbc.2_Intron	NM_021873	NP_068659	P30305	MPIP2_HUMAN	cell division cycle 25B isoform 1	463	Rhodanese.				cell division|G2/M transition of mitotic cell cycle|mitosis|positive regulation of cell proliferation	cytosol|microtubule organizing center|nucleoplasm	protein binding|protein tyrosine phosphatase activity			lung(3)|ovary(2)	5						GAACGCGACGCCGAGAGCTTCC	0.624													26	58					0	0	1	0	0
ANKRD5	63926	broad.mit.edu	37	20	10025081	10025081	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr20:10025081G>A	uc002wno.2	+	5	979	c.586G>A	c.(586-588)GGG>AGG	p.G196R	uc002wnn.1_Intron|ANKRD5_uc002wnp.2_Missense_Mutation_p.G196R|ANKRD5_uc010gbz.2_Missense_Mutation_p.G7R	NM_022096	NP_071379	Q9NU02	ANKR5_HUMAN	ankyrin repeat domain protein 5	196	ANK 2.						calcium ion binding			ovary(1)|breast(1)	2						GTCAAGAGAAGGGGTAGTGGA	0.443													42	126					0	0	1	0	0
ZNF341	84905	broad.mit.edu	37	20	32379123	32379123	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr20:32379123C>T	uc002wzy.2	+	15	2385	c.2365C>T	c.(2365-2367)CCC>TCC	p.P789S	ZNF341_uc002wzx.2_Missense_Mutation_p.P782S|ZNF341_uc010geq.2_Missense_Mutation_p.P699S|ZNF341_uc010ger.2_RNA|ZNF341_uc002wzz.2_Missense_Mutation_p.P216S	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	789					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CGAGGCTGTCCCCGGCAAGCC	0.692													9	36					0	0	1	0	0
PHF20	51230	broad.mit.edu	37	20	34451165	34451165	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr20:34451165G>A	uc002xek.1	+	6	762	c.651G>A	c.(649-651)GAG>GAA	p.E217E	PHF20_uc002xei.1_Silent_p.E217E|PHF20_uc010gfo.1_Silent_p.E217E|PHF20_uc002xej.1_Silent_p.E101E|PHF20_uc002xel.1_Silent_p.E79E	NM_016436	NP_057520	Q9BVI0	PHF20_HUMAN	PHD finger protein 20	217	Lys-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex	DNA binding|zinc ion binding			ovary(1)	1	Breast(12;0.00631)|all_lung(11;0.0145)					CCAAGAACGAGAAGGAAGACA	0.413													61	128					0	0	1	0	0
C20orf117	140710	broad.mit.edu	37	20	35441163	35441163	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr20:35441163G>A	uc002xgd.1	-	6	2014	c.1687C>T	c.(1687-1689)CCC>TCC	p.P563S	C20orf117_uc002xge.1_RNA	NM_199181	NP_954650	O94964	K0889_HUMAN	hypothetical protein LOC140710 isoform 2	563											0		Myeloproliferative disorder(115;0.00874)				CTCCGGCTGGGGTCGGGCTTA	0.602													13	20					0	0	1	0	0
RBL1	5933	broad.mit.edu	37	20	35695516	35695516	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr20:35695516G>A	uc002xgi.2	-	5	644	c.565C>T	c.(565-567)CGG>TGG	p.R189W	RBL1_uc010zvt.1_RNA|RBL1_uc002xgj.1_Missense_Mutation_p.R189W|RBL1_uc010gfv.1_RNA	NM_002895	NP_002886	P28749	RBL1_HUMAN	retinoblastoma-like protein 1 isoform a	189					cell cycle|chromatin modification|interspecies interaction between organisms|regulation of cell cycle|regulation of lipid kinase activity|transcription, DNA-dependent		transcription factor binding			lung(5)|skin(3)|ovary(2)	10		Myeloproliferative disorder(115;0.00878)				CCAATCATCCGAAAATTACCT	0.353													23	66					0	0	1	0	0
VSTM2L	128434	broad.mit.edu	37	20	36560112	36560112	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr20:36560112G>A	uc002xhk.3	+	2	451	c.197G>A	c.(196-198)GGC>GAC	p.G66D		NM_080607	NP_542174	Q96N03	VTM2L_HUMAN	V-set and transmembrane domain containing 2 like	66	Ig-like.									ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.00878)				TCCTTCCGCGGCAGCGGCTCC	0.622													42	128					0	0	1	0	0
EMILIN3	90187	broad.mit.edu	37	20	39990196	39990196	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr20:39990196C>T	uc002xjy.1	-	4	2237	c.2013G>A	c.(2011-2013)GGG>GGA	p.G671G		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	671						proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				AGCGGCTCAGCCCACTGGCCA	0.652													7	19					0	0	1	0	0
TOX2	84969	broad.mit.edu	37	20	42682973	42682973	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr20:42682973G>A	uc002xlf.3	+	5	730	c.713G>A	c.(712-714)GGA>GAA	p.G238E	TOX2_uc010ggo.2_Missense_Mutation_p.G229E|TOX2_uc002xle.3_Missense_Mutation_p.G187E|TOX2_uc010ggp.2_Missense_Mutation_p.G187E|TOX2_uc002xlg.2_Missense_Mutation_p.G187E|TOX2_uc010zwk.1_Missense_Mutation_p.G107E	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	238	Nuclear localization signal (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			GCCGACCCAGGAAAAAAGGCC	0.537													10	24					0	0	1	0	0
ELMO2	63916	broad.mit.edu	37	20	45003884	45003884	+	Silent	SNP	C	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr20:45003884C>A	uc002xrt.1	-	13	1266	c.1056G>T	c.(1054-1056)CTG>CTT	p.L352L	ELMO2_uc010zxq.1_Silent_p.L84L|ELMO2_uc002xrs.1_Silent_p.L99L|ELMO2_uc002xru.1_Silent_p.L352L|ELMO2_uc010zxr.1_Silent_p.L364L|ELMO2_uc010zxs.1_Silent_p.L169L|ELMO2_uc002xrv.1_Silent_p.L71L|ELMO2_uc002xrw.2_Silent_p.L169L|ELMO2_uc002xrx.1_Silent_p.L352L	NM_133171	NP_573403	Q96JJ3	ELMO2_HUMAN	engulfment and cell motility 2	352	ELMO.				apoptosis|cell chemotaxis|phagocytosis	cytoskeleton|cytosol|membrane	lyase activity|receptor tyrosine kinase binding|SH3 domain binding			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				CGGTAAATCCCAGCATTTTGT	0.527													25	74					6.32553e-13	6.39572e-13	1	1	0
FAM65C	140876	broad.mit.edu	37	20	49227424	49227424	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr20:49227424C>T	uc002xvm.2	-	6	698	c.380G>A	c.(379-381)AGG>AAG	p.R127K	FAM65C_uc010zyt.1_Missense_Mutation_p.R131K|FAM65C_uc010zyu.1_RNA|FAM65C_uc002xvn.1_Missense_Mutation_p.R127K	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	127										ovary(2)	2						CCGAATGTGCCTTTCCACACA	0.597													6	99					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51872205	51872205	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr20:51872205C>T	uc002xwo.2	+	2	3164	c.2208C>T	c.(2206-2208)GTC>GTT	p.V736V		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	736					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			ATCTCAATGTCATGGACAAGC	0.542													25	57					0	0	1	0	0
BCAS1	8537	broad.mit.edu	37	20	52570057	52570057	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr20:52570057C>T	uc002xws.2	-	11	1932	c.1594G>A	c.(1594-1596)GAC>AAC	p.D532N	BCAS1_uc010zza.1_Missense_Mutation_p.D198N|BCAS1_uc010zzb.1_Missense_Mutation_p.D458N|BCAS1_uc010gim.2_Missense_Mutation_p.D388N|BCAS1_uc002xwt.2_Missense_Mutation_p.D518N|BCAS1_uc010gil.1_Missense_Mutation_p.D454N	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	532						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			GAGTTCGTGTCCACCGTGGCC	0.542													32	102					0	0	1	0	0
EDN3	1908	broad.mit.edu	37	20	57876665	57876665	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr20:57876665G>A	uc002yap.2	+	2	622	c.253G>A	c.(253-255)GCC>ACC	p.A85T	EDN3_uc002yao.1_Missense_Mutation_p.A85T|EDN3_uc002yaq.2_Missense_Mutation_p.A85T|EDN3_uc002yar.2_Missense_Mutation_p.A85T|EDN3_uc002yas.2_Missense_Mutation_p.A85T	NM_000114	NP_000105	P14138	EDN3_HUMAN	endothelin 3 isoform 1 preproprotein	85					cell surface receptor linked signaling pathway|inositol phosphate-mediated signaling|neutrophil chemotaxis|peptide hormone secretion|positive regulation of heart rate|positive regulation of hormone secretion|positive regulation of leukocyte chemotaxis|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	extracellular space|soluble fraction	endothelin B receptor binding|hormone activity			skin(1)	1	all_lung(29;0.0115)					GGAGCAGGCGGCCGAGGGGGC	0.652													39	83					0	0	1	0	0
ADRM1	11047	broad.mit.edu	37	20	60881720	60881720	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr20:60881720G>A	uc002ycn.2	+	5	551	c.471G>A	c.(469-471)CAG>CAA	p.Q157Q	ADRM1_uc002yco.2_Silent_p.Q157Q|ADRM1_uc002ycp.1_RNA	NM_007002	NP_008933	Q16186	ADRM1_HUMAN	adhesion regulating molecule 1 precursor	157	Gly-rich.				proteasome assembly|transcription elongation from RNA polymerase II promoter	cytoplasm|integral to plasma membrane|membrane fraction|nucleus|proteasome complex	endopeptidase activator activity|protease binding|proteasome binding				0	Breast(26;7.76e-09)		BRCA - Breast invasive adenocarcinoma(19;2.51e-06)			GTGGCCTGCAGAGCCTGCTGG	0.682													3	8					0	0	1	0	0
LAMA5	3911	broad.mit.edu	37	20	60885750	60885750	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr20:60885750G>A	uc002ycq.2	-	75	10484	c.10417C>T	c.(10417-10419)CCG>TCG	p.P3473S		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	3473	Laminin G-like 4.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTGCTGGCCGGGAGGCCGCCC	0.711													6	16					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10914379	10914379	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr21:10914379G>A	uc002yip.1	-	21	1708	c.1340C>T	c.(1339-1341)TCA>TTA	p.S447L	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.S429L|TPTE_uc002yir.1_Missense_Mutation_p.S409L|TPTE_uc010gkv.1_Missense_Mutation_p.S309L	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	447	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TTTTCCTAATGAAATAGTGGA	0.328													7	81					0	0	1	0	0
NCAM2	4685	broad.mit.edu	37	21	22782762	22782762	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr21:22782762G>A	uc002yld.1	+	10	1613	c.1364G>A	c.(1363-1365)GGA>GAA	p.G455E	NCAM2_uc011acb.1_Missense_Mutation_p.G313E	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	455	Ig-like C2-type 5.|Extracellular (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		TATAGTACAGGAAGAAAGATG	0.294													32	101					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41416186	41416186	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr21:41416186C>T	uc002yyq.1	-	31	5654	c.5202G>A	c.(5200-5202)AGG>AGA	p.R1734R	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1734	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CCTTGGCATTCCTCCTGGTGG	0.592													9	24					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41711179	41711179	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr21:41711179C>T	uc002yyq.1	-	7	1826	c.1374G>A	c.(1372-1374)ATG>ATA	p.M458I	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	458	Extracellular (Potential).|Ig-like C2-type 5.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CCGACGTGATCATCTGGCTGA	0.607													23	57					0	0	1	0	0
MX1	4599	broad.mit.edu	37	21	42807886	42807886	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr21:42807886C>T	uc002yzh.2	+	8	1175	c.228C>T	c.(226-228)ATC>ATT	p.I76I	MX1_uc002yzi.2_Silent_p.I76I|MX1_uc010goq.2_Silent_p.I76I	NM_001144925	NP_001138397	P20591	MX1_HUMAN	myxovirus resistance protein 1	76					induction of apoptosis|response to virus|type I interferon-mediated signaling pathway	cytosol	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(19;3.18e-07)|all_epithelial(19;0.0277)				TCGCCGTCATCGGGGACCAGA	0.577													21	93					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45833946	45833946	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr21:45833946C>T	uc002zet.1	+	21	3348	c.3135C>T	c.(3133-3135)ATC>ATT	p.I1045I	TRPM2_uc002zeu.1_Silent_p.I1045I|TRPM2_uc002zew.1_Silent_p.I1045I|TRPM2_uc010gpt.1_Silent_p.I1045I|TRPM2_uc002zex.1_Silent_p.I831I|TRPM2_uc002zey.1_Silent_p.I558I	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	1045	Helical; (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						ACCTCCTCATCGCCATGTTCA	0.657													91	284					0	0	1	0	0
DIP2A	23181	broad.mit.edu	37	21	47969758	47969758	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr21:47969758C>T	uc002zjo.2	+	22	2780	c.2597C>T	c.(2596-2598)TCG>TTG	p.S866L	DIP2A_uc011afy.1_Missense_Mutation_p.S802L|DIP2A_uc011afz.1_Missense_Mutation_p.S862L|DIP2A_uc002zjn.2_Missense_Mutation_p.S866L	NM_015151	NP_055966	Q14689	DIP2A_HUMAN	disco-interacting protein 2A isoform a	866					multicellular organismal development	nucleus	catalytic activity|transcription factor binding			ovary(2)	2	Breast(49;0.0933)			Epithelial(3;3.12e-06)|OV - Ovarian serous cystadenocarcinoma(3;5.68e-06)|all cancers(3;4.08e-05)|Colorectal(79;0.0129)|COAD - Colon adenocarcinoma(84;0.0824)		CCGGATGCCTCGGAGGAGGAC	0.642													6	101					0	0	1	0	0
CECR6	27439	broad.mit.edu	37	22	17601208	17601208	+	Silent	SNP	G	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr22:17601208G>C	uc002zmb.2	-	1	1006	c.810C>G	c.(808-810)GCC>GCG	p.A270A	CECR6_uc002zma.2_Intron|uc002zmc.2_5'Flank	NM_031890	NP_114096	Q9BXQ6	CECR6_HUMAN	cat eye syndrome chromosome region, candidate 6	270	Ala-rich.										0		all_epithelial(15;0.0181)|Lung NSC(13;0.109)|all_lung(157;0.132)		Colorectal(9;0.221)		GGGGCGGCGCGGCGTGGTGGT	0.582													5	8					0	0	1	0	0
KLHL22	84861	broad.mit.edu	37	22	20819167	20819167	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr22:20819167G>A	uc002zsl.1	-	4	1199	c.1090C>T	c.(1090-1092)CGA>TGA	p.R364*	KLHL22_uc011ahr.1_Nonsense_Mutation_p.R221*|KLHL22_uc002zsm.1_Nonsense_Mutation_p.R364*	NM_032775	NP_116164	Q53GT1	KLH22_HUMAN	kelch-like	364	Kelch 2.				cell division	Cul3-RING ubiquitin ligase complex				lung(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			GACTCTGCTCGAAATCCTTGG	0.567													30	97					0	0	1	0	0
LOC91316	91316	broad.mit.edu	37	22	24056378	24056378	+	RNA	SNP	A	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr22:24056378A>G	uc011aiz.1	-	3		c.731T>C			LOC91316_uc010gub.1_RNA	NR_024448				Homo sapiens cDNA FLJ32313 fis, clone PROST2003232, weakly similar to BETA-GLUCURONIDASE PRECURSOR (EC 3.2.1.31).												0						TCTTACCAGAAGCCCTCACCA	0.562													12	16					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26166101	26166101	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr22:26166101G>A	uc003abz.1	+	5	1787	c.1537G>A	c.(1537-1539)GCA>ACA	p.A513T	MYO18B_uc003aca.1_Missense_Mutation_p.A394T|MYO18B_uc010guy.1_Missense_Mutation_p.A394T|MYO18B_uc010guz.1_Missense_Mutation_p.A394T|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_Missense_Mutation_p.A26T	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	513						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						ATGGTATGAGGCAGAGAAAGT	0.512													31	58					0	0	1	0	0
TPST2	8459	broad.mit.edu	37	22	26937530	26937530	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr22:26937530G>A	uc003acv.2	-	2	235	c.67C>T	c.(67-69)CAG>TAG	p.Q23*	TPST2_uc003acw.2_Nonsense_Mutation_p.Q23*|TPST2_uc003acx.2_Nonsense_Mutation_p.Q23*|TPST2_uc011akf.1_Nonsense_Mutation_p.Q23*	NM_003595	NP_003586	O60704	TPST2_HUMAN	tyrosylprotein sulfotransferase 2	23	Helical; Signal-anchor for type II membrane protein; (Potential).				peptidyl-tyrosine sulfation	endoplasmic reticulum|Golgi membrane|integral to membrane|membrane fraction	protein-tyrosine sulfotransferase activity			central_nervous_system(1)	1						TGTCCCAGCTGAACCGCCAGC	0.741													4	22					0	0	1	0	0
MN1	4330	broad.mit.edu	37	22	28194115	28194115	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr22:28194115G>A	uc003adj.2	-	1	3372	c.2417C>T	c.(2416-2418)TCG>TTG	p.S806L		NM_002430	NP_002421	Q10571	MN1_HUMAN	meningioma  1	806							binding			central_nervous_system(3)|lung(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	10						GGAGCCCAGCGAGAGCGCGCC	0.672			T	ETV6	AML|meningioma								17	41					0	0	1	0	0
HMGXB4	10042	broad.mit.edu	37	22	35661022	35661022	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr22:35661022C>T	uc003anl.2	+	5	815	c.641C>T	c.(640-642)CCC>CTC	p.P214L	HMGXB4_uc011amh.1_Missense_Mutation_p.P105L|HMGXB4_uc003ank.2_Missense_Mutation_p.P105L	NM_001003681	NP_001003681	Q9UGU5	HMGX4_HUMAN	high-mobility group protein 2-like 1	214					endosome to lysosome transport|negative regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	NURF complex	DNA binding			breast(1)|skin(1)	2						TTTCAATATCCCTCCCAACAA	0.443													66	160					0	0	1	0	0
FOXRED2	80020	broad.mit.edu	37	22	36901955	36901955	+	Missense_Mutation	SNP	A	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr22:36901955A>C	uc003apn.3	-	1	623	c.515T>G	c.(514-516)GTG>GGG	p.V172G	FOXRED2_uc003apo.3_Missense_Mutation_p.V172G|FOXRED2_uc003app.3_Missense_Mutation_p.V172G	NM_024955	NP_079231	Q8IWF2	FXRD2_HUMAN	FAD-dependent oxidoreductase domain containing 2	172					ER-associated protein catabolic process	endoplasmic reticulum lumen	flavin adenine dinucleotide binding|oxidoreductase activity|protein binding			lung(1)|kidney(1)	2						GCACTGATGCACCTGGCCCTT	0.587													26	81					0	0	1	0	0
SSTR3	6753	broad.mit.edu	37	22	37603308	37603308	+	Missense_Mutation	SNP	C	T	T	rs149879896	byFrequency	TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr22:37603308C>T	uc003ara.2	-	2	597	c.535G>A	c.(535-537)GTG>ATG	p.V179M	SSTR3_uc003arb.2_Missense_Mutation_p.V179M	NM_001051	NP_001042	P32745	SSR3_HUMAN	somatostatin receptor 3	179	Helical; Name=4; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|induction of apoptosis by hormones|negative regulation of cell proliferation	integral to plasma membrane|nonmotile primary cilium	somatostatin receptor activity			lung(1)	1						GAGAAGACCACCACGGGCAGC	0.731													7	27					0	0	1	0	0
C22orf23	84645	broad.mit.edu	37	22	38340502	38340502	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr22:38340502C>T	uc003auj.1	-	6	595	c.504G>A	c.(502-504)AGG>AGA	p.R168R	C22orf23_uc003auk.1_Silent_p.R168R	NM_032561	NP_115950	Q9BZE7	EVG1_HUMAN	hypothetical protein LOC84645	168											0	Melanoma(58;0.045)					GGAATTCTTTCCTCTCCTGGA	0.547													26	65					0	0	1	0	0
EFCAB6	64800	broad.mit.edu	37	22	44083434	44083434	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr22:44083434G>A	uc003bdy.1	-	11	1274	c.1059C>T	c.(1057-1059)ATC>ATT	p.I353I	EFCAB6_uc003bdz.1_Silent_p.I201I|EFCAB6_uc010gzi.1_Silent_p.I201I|EFCAB6_uc010gzk.1_Intron|EFCAB6_uc011aqa.1_Intron|EFCAB6_uc003bea.1_Silent_p.I350I	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	353					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				GCTTCCAATTGATTTTAGTGG	0.318													29	39					0	0	1	0	0
FAM19A5	25817	broad.mit.edu	37	22	48885451	48885451	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr22:48885451T>C	uc003bim.3	+	1	164	c.47T>C	c.(46-48)CTG>CCG	p.L16P		NM_001082967	NP_001076436	Q7Z5A7	F19A5_HUMAN	family with sequence similarity 19 (chemokine	16	Helical; (Potential).					extracellular region|integral to membrane				large_intestine(1)	1		all_cancers(38;2.95e-11)|all_epithelial(38;3.07e-10)|all_lung(38;2.89e-05)|Breast(42;0.000396)|Lung NSC(38;0.000471)|Ovarian(80;0.00934)|Lung SC(80;0.195)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0227)|BRCA - Breast invasive adenocarcinoma(115;0.119)		GCGACCGCCCTGCCCAGCATG	0.433													3	2					0	0	1	0	0
MAPK8IP2	23542	broad.mit.edu	37	22	51043424	51043425	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr22:51043424_51043425AC>TT	uc003bmx.2	+	6	1814_1815	c.1697_1698AC>TT	c.(1696-1698)GAC>GTT	p.D566V	MAPK8IP2_uc003bmy.2_Missense_Mutation_p.D539V|MAPK8IP2_uc011asc.1_5'Flank	NM_012324	NP_036456	Q13387	JIP2_HUMAN	mitogen-activated protein kinase 8 interacting	566					behavioral fear response|dendrite morphogenesis|MAPKKK cascade|nonassociative learning|positive regulation of anti-apoptosis|regulation of excitatory postsynaptic membrane potential|regulation of JNK cascade|regulation of receptor activity|regulation of synaptic transmission, glutamatergic|signal complex assembly|social behavior	cytoplasm|postsynaptic density	beta-amyloid binding|kinesin binding|MAP-kinase scaffold activity|protein kinase activator activity|protein kinase binding			large_intestine(2)|central_nervous_system(1)	3		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		OV - Ovarian serous cystadenocarcinoma(4;1.28e-70)|Epithelial(4;3.46e-65)|GBM - Glioblastoma multiforme(4;4.83e-06)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		ACCTCGCCGGACAGCCCTGACC	0.663													9	45					0	0	1	0	0
LMCD1	29995	broad.mit.edu	37	3	8607335	8607335	+	Splice_Site	SNP	T	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:8607335T>C	uc003bqq.2	+	5	1053	c.939_splice	c.e5+2	p.E313_splice	LMCD1_uc011atd.1_Splice_Site_p.E240_splice|LMCD1_uc011ate.1_Splice_Site_p.E201_splice	NM_014583	NP_055398	Q9NZU5	LMCD1_HUMAN	LIM and cysteine-rich domains 1						positive regulation of calcineurin-NFAT signaling pathway|regulation of cardiac muscle hypertrophy|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus	transcription corepressor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(96;0.124)		TGCGATGAGGTGGGAGATAGC	0.607													3	11					0	0	1	0	0
FANCD2	2177	broad.mit.edu	37	3	10130575	10130575	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:10130575C>T	uc003buw.2	+	36	3702	c.3624C>T	c.(3622-3624)GTC>GTT	p.V1208V	FANCD2_uc003bux.1_Silent_p.V1208V|FANCD2_uc003buy.1_Silent_p.V1208V|FANCD2_uc010hcw.1_RNA|C3orf24_uc003buz.2_Intron	NM_033084	NP_149075	Q9BXW9	FACD2_HUMAN	Fanconi anemia complementation group D2 isoform	1208					DNA repair|response to gamma radiation	nucleoplasm	protein binding|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.148)		GTGTTGGTGTCCCAGAACTGA	0.443			D|Mis|N|F			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				47	123					0	0	1	0	0
C3orf20	84077	broad.mit.edu	37	3	14724592	14724592	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:14724592C>T	uc003byy.2	+	3	776	c.372C>T	c.(370-372)GCC>GCT	p.A124A	C3orf20_uc003byz.2_Silent_p.A2A|C3orf20_uc003bza.2_Silent_p.A2A|C3orf20_uc003byx.1_Silent_p.A124A	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	124						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						CCACCATGGCCCGTCAGGTGC	0.522													7	16					0	0	1	0	0
C3orf20	84077	broad.mit.edu	37	3	14756895	14756895	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:14756895C>T	uc003byy.2	+	9	1817	c.1413C>T	c.(1411-1413)ACC>ACT	p.T471T	C3orf20_uc003byz.2_Silent_p.T349T|C3orf20_uc003bza.2_Silent_p.T349T|C3orf20_uc003bzb.1_5'UTR	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	471						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						GGACAGAGACCCTGCTTTCCC	0.562													19	46					0	0	1	0	0
SATB1	6304	broad.mit.edu	37	3	18390671	18390671	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:18390671C>T	uc003cbh.2	-	11	4018	c.2283G>A	c.(2281-2283)TTG>TTA	p.L761L	SATB1_uc003cbi.2_Silent_p.L793L|SATB1_uc003cbj.2_Silent_p.L761L	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	761					cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						CTCAGTCTTTCAAATCAGTAT	0.358													43	97					0	0	1	0	0
KCNH8	131096	broad.mit.edu	37	3	19554778	19554778	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:19554778C>T	uc003cbk.1	+	13	2591	c.2396C>T	c.(2395-2397)TCA>TTA	p.S799L	KCNH8_uc010hex.1_Missense_Mutation_p.S260L	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	799	Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						TTGCAACTTTCAACTTTGAAT	0.423													59	104					0	0	1	0	0
LRRC3B	116135	broad.mit.edu	37	3	26751770	26751770	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:26751770G>A	uc003cdp.2	+	2	1196	c.607G>A	c.(607-609)GAT>AAT	p.D203N	LRRC3B_uc003cdq.2_Missense_Mutation_p.D203N	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	203						integral to membrane				pancreas(2)|ovary(1)|skin(1)	4						AAAAACTACCGATTATGCCAT	0.473													14	30					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36875201	36875201	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:36875201C>T	uc003cgj.2	-	12	4393	c.4091G>A	c.(4090-4092)AGG>AAG	p.R1364K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1914					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CCTACCTTCCCTGTTCAGCAG	0.542													25	68					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38938469	38938469	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:38938469G>A	uc011ays.1	-	14	2469	c.2270C>T	c.(2269-2271)TCC>TTC	p.S757F	SCN11A_uc010hhn.1_5'Flank	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	757	II.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CACTAGGAAGGAGTGCCAGAA	0.488													27	68					0	0	1	0	0
SLC25A38	54977	broad.mit.edu	37	3	39433070	39433070	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:39433070G>A	uc003cjo.2	+	4	816	c.415G>A	c.(415-417)GTC>ATC	p.V139I		NM_017875	NP_060345	Q96DW6	S2538_HUMAN	solute carrier family 25, member 38	139	Solcar 2.|Helical; Name=3; (Potential).				erythrocyte differentiation|heme biosynthetic process|transport	integral to membrane|mitochondrial inner membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		TGTTGCAGGGGTCTGTATGTC	0.557													67	199					0	0	1	0	0
MYRIP	25924	broad.mit.edu	37	3	40275410	40275410	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:40275410A>T	uc003cka.2	+	12	2101	c.1966A>T	c.(1966-1968)ACA>TCA	p.T656S	MYRIP_uc010hhu.2_RNA|MYRIP_uc010hhv.2_Intron|MYRIP_uc010hhw.2_Missense_Mutation_p.T567S|MYRIP_uc011ayz.1_Missense_Mutation_p.T469S|uc003ckb.2_Intron	NM_015460	NP_056275	Q8NFW9	MYRIP_HUMAN	myosin VIIA and Rab interacting protein	656	Actin-binding.				intracellular protein transport		actin binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.174)|Kidney(284;0.206)		CATCAATGCCACAGAGGAGTT	0.507													27	62					0	0	1	0	0
ZNF445	353274	broad.mit.edu	37	3	44489600	44489600	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:44489600G>A	uc003cnf.2	-	8	1911	c.1563C>T	c.(1561-1563)GCC>GCT	p.A521A	ZNF445_uc011azv.1_Silent_p.A509A|ZNF445_uc011azw.1_Silent_p.A521A	NM_181489	NP_852466	P59923	ZN445_HUMAN	zinc finger protein 445	521	C2H2-type 2.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(197;0.0514)|Kidney(197;0.0646)		TCCACCGGAAGGCTTTCCCAC	0.468													28	109					0	0	1	0	0
EXOSC7	23016	broad.mit.edu	37	3	45048923	45048923	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:45048923G>A	uc003coi.2	+	7	656	c.627G>A	c.(625-627)CGG>CGA	p.R209R	EXOSC7_uc003coh.1_Silent_p.R144R|EXOSC7_uc010his.1_Silent_p.R128R|EXOSC7_uc003coj.2_Silent_p.R209R	NM_015004	NP_055819	Q15024	EXOS7_HUMAN	exosome component 7	209					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA processing	cytosol|exosome (RNase complex)|nucleolus	3'-5'-exoribonuclease activity|protein binding|RNA binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00911)|KIRC - Kidney renal clear cell carcinoma(197;0.0509)|Kidney(197;0.064)		TTGGCTATCGGCATGTGGTGG	0.612													13	24					0	0	1	0	0
RNF123	63891	broad.mit.edu	37	3	49740938	49740938	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:49740938C>T	uc003cxh.2	+	21	1915	c.1829C>T	c.(1828-1830)TCG>TTG	p.S610L	RNF123_uc010hky.1_Missense_Mutation_p.S272L|RNF123_uc003cxi.2_RNA	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	610						cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		GGCCTCCTCTCGCACCTGCGG	0.622											OREG0015571	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	21					0	0	1	0	0
DOCK3	1795	broad.mit.edu	37	3	51367609	51367609	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:51367609C>T	uc011bds.1	+	33	3466	c.3443C>T	c.(3442-3444)TCA>TTA	p.S1148L		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1148	DHR-2.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		AGCATGGTGTCAGAAGGGAAA	0.532													4	8					0	0	1	0	0
DNAH1	25981	broad.mit.edu	37	3	52431033	52431033	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:52431033C>T	uc011bef.1	+	73	12021	c.11760C>T	c.(11758-11760)CAC>CAT	p.H3920H	DNAH1_uc003ddv.2_Silent_p.H778H	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	3985					ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GCATCTACCACCAGATCCCGC	0.617													8	10					0	0	1	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54930866	54930866	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:54930866G>A	uc003dhf.2	+	26	2385	c.2337G>A	c.(2335-2337)GGG>GGA	p.G779G	CACNA2D3_uc003dhg.1_Silent_p.G685G|CACNA2D3_uc003dhh.1_RNA|uc003dhk.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	779	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		AGATTCCAGGGAGCTTCGTCT	0.562													34	106					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58104641	58104641	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:58104641C>T	uc003djj.2	+	19	2953	c.2788C>T	c.(2788-2790)CCT>TCT	p.P930S	FLNB_uc010hne.2_Missense_Mutation_p.P930S|FLNB_uc003djk.2_Missense_Mutation_p.P930S|FLNB_uc010hnf.2_Missense_Mutation_p.P930S|FLNB_uc003djl.2_Missense_Mutation_p.P761S|FLNB_uc003djm.2_Missense_Mutation_p.P761S	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	930	Filamin 7.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		CGATCCCATCCCTAAAAGCCC	0.478													43	91					0	0	1	0	0
MAGI1	9223	broad.mit.edu	37	3	65415739	65415739	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:65415739G>A	uc003dmn.2	-	12	2149	c.1623C>T	c.(1621-1623)TCC>TCT	p.S541S	MAGI1_uc003dmm.2_Silent_p.S541S|MAGI1_uc003dmo.2_Silent_p.S541S|MAGI1_uc003dmp.2_Silent_p.S541S|MAGI1_uc010hny.2_Silent_p.S426S	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	541	PDZ 2.				cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		CAATGGGGATGGACTGGAAGA	0.498													19	47					0	0	1	0	0
KBTBD8	84541	broad.mit.edu	37	3	67054506	67054506	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:67054506C>T	uc003dmy.2	+	3	1168	c.1115C>T	c.(1114-1116)TCC>TTC	p.S372F	KBTBD8_uc011bfv.1_Intron	NM_032505	NP_115894	Q8NFY9	KBTB8_HUMAN	T-cell activation kelch repeat protein	372	Kelch 1.									ovary(2)|large_intestine(1)|breast(1)	4		Lung NSC(201;0.0765)		BRCA - Breast invasive adenocarcinoma(55;6.02e-06)|KIRC - Kidney renal clear cell carcinoma(39;0.105)|Kidney(39;0.125)		AGATGGCTATCCAAACCATCC	0.458													53	110					0	0	1	0	0
PDZRN3	23024	broad.mit.edu	37	3	73432642	73432642	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:73432642C>T	uc003dpl.1	-	10	3171	c.3075G>A	c.(3073-3075)ATG>ATA	p.M1025I	PDZRN3_uc011bgh.1_Missense_Mutation_p.M682I|PDZRN3_uc010hoe.1_Missense_Mutation_p.M723I|PDZRN3_uc011bgf.1_Missense_Mutation_p.M742I|PDZRN3_uc011bgg.1_Missense_Mutation_p.M745I	NM_015009	NP_055824	Q9UPQ7	PZRN3_HUMAN	PDZ domain containing ring finger 3	1025	Potential.						ubiquitin-protein ligase activity|zinc ion binding			pancreas(2)|ovary(2)|skin(2)|large_intestine(1)	7		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		TCTTCTTCATCATCTTTTTGT	0.458													102	302					0	0	1	0	0
ROBO2	6092	broad.mit.edu	37	3	77666905	77666905	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:77666905G>A	uc003dpy.3	+	22	4178	c.3535G>A	c.(3535-3537)GAT>AAT	p.D1179N	ROBO2_uc003dpz.2_Missense_Mutation_p.D1183N|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.D1183N|ROBO2_uc003dqa.2_Missense_Mutation_p.D306N	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	1179	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		CTATCAGTTTGATATAGCAAA	0.418													29	60					0	0	1	0	0
ROBO1	6091	broad.mit.edu	37	3	78695301	78695301	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:78695301C>T	uc003dqe.2	-	21	3087	c.2879G>A	c.(2878-2880)GGG>GAG	p.G960E	ROBO1_uc003dqb.2_Missense_Mutation_p.G921E|ROBO1_uc003dqc.2_Missense_Mutation_p.G915E|ROBO1_uc003dqd.2_Missense_Mutation_p.G915E|ROBO1_uc010hoh.2_Missense_Mutation_p.G152E|ROBO1_uc011bgl.1_Missense_Mutation_p.G532E	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	960	Cytoplasmic (Potential).				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		TAATTACCTCCCTCCACTGCT	0.348													26	67					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108211414	108211414	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:108211414G>A	uc003dxa.1	-	10	921	c.864C>T	c.(862-864)TTC>TTT	p.F288F		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	288	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CAGCCTGCTGGAAAATCACCC	0.363													16	43					0	0	1	0	0
MORC1	27136	broad.mit.edu	37	3	108688560	108688560	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:108688560A>G	uc003dxl.2	-	26	2647	c.2560T>C	c.(2560-2562)TGC>CGC	p.C854R	MORC1_uc011bhn.1_Missense_Mutation_p.C833R	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	854					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TGCTCTGGGCACTGCTCCAGC	0.368													26	84					0	0	1	0	0
ADPRH	141	broad.mit.edu	37	3	119306546	119306546	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:119306546C>T	uc003ecs.2	+	5	1193	c.895C>T	c.(895-897)CAT>TAT	p.H299Y	ADPRH_uc010hqv.2_Missense_Mutation_p.H299Y|ADPRH_uc011bjb.1_Missense_Mutation_p.H192Y|ADPRH_uc003ect.2_Missense_Mutation_p.H299Y	NM_001125	NP_001116	P54922	ADPRH_HUMAN	ADP-ribosylarginine hydrolase	299					protein de-ADP-ribosylation		ADP-ribosylarginine hydrolase activity|magnesium ion binding			ovary(1)	1		Lung NSC(201;0.0977)		GBM - Glioblastoma multiforme(114;0.23)		AGCCTTTTTCCATGGTGGAGA	0.537													37	66					0	0	1	0	0
STXBP5L	9515	broad.mit.edu	37	3	121126303	121126303	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:121126303C>T	uc003eec.3	+	24	3013	c.2873C>T	c.(2872-2874)GCC>GTC	p.A958V	STXBP5L_uc011bji.1_Missense_Mutation_p.A934V	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	958	WD 12.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		GAAAAACAAGCCAAAGTCTTC	0.388													56	124					0	0	1	0	0
SLC15A2	6565	broad.mit.edu	37	3	121658222	121658222	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:121658222G>A	uc003eep.2	+	20	1941	c.1788G>A	c.(1786-1788)TGG>TGA	p.W596*	SLC15A2_uc011bjn.1_Nonsense_Mutation_p.W565*	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	596					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	TTCAGGCCTGGAAGATTGAAG	0.448													36	81					0	0	1	0	0
ADCY5	111	broad.mit.edu	37	3	123010131	123010131	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:123010131G>A	uc003egh.1	-	18	3156	c.3156C>T	c.(3154-3156)TTC>TTT	p.F1052F	ADCY5_uc003egg.1_Silent_p.F710F	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	1052	Cytoplasmic (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		CGCGGGCCAGGAAGTGAGCGG	0.597													26	59					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124132416	124132416	+	Missense_Mutation	SNP	C	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:124132416C>A	uc003ehg.2	+	14	2567	c.2440C>A	c.(2440-2442)CAC>AAC	p.H814N	KALRN_uc010hrv.1_Missense_Mutation_p.H814N|KALRN_uc003ehf.1_Missense_Mutation_p.H814N|KALRN_uc011bjy.1_Missense_Mutation_p.H814N|KALRN_uc003ehh.1_Missense_Mutation_p.H160N	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	814					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GCTGCAGCGCCACACAGAACG	0.547													23	42					9.95505e-16	1.01076e-15	1	1	0
CCDC37	348807	broad.mit.edu	37	3	126137312	126137312	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:126137312G>A	uc003eiu.1	+	6	529	c.430G>A	c.(430-432)GAG>AAG	p.E144K	CCDC37_uc010hsg.1_Missense_Mutation_p.E145K	NM_182628	NP_872434	Q494V2	CCD37_HUMAN	coiled-coil domain containing 37	144										ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.166)		AAAGAATGTGGAGCCTGAGAA	0.607													18	36					0	0	1	0	0
ZXDC	79364	broad.mit.edu	37	3	126181039	126181039	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:126181039G>A	uc003eiv.2	-	6	1520	c.1466C>T	c.(1465-1467)CCG>CTG	p.P489L	ZXDC_uc010hsh.2_RNA|ZXDC_uc003eix.2_Missense_Mutation_p.P489L	NM_025112	NP_079388	Q2QGD7	ZXDC_HUMAN	ZXD family zinc finger C isoform 1	489					positive regulation of transcription, DNA-dependent	nucleus	C2H2 zinc finger domain binding|identical protein binding|LRR domain binding|nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.155)		AAGAGAACTCGGAGCTTCTAG	0.448													30	110					0	0	1	0	0
DNAJB8	165721	broad.mit.edu	37	3	128181666	128181666	+	Silent	SNP	A	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:128181666A>G	uc003ekk.1	-	3	2084	c.423T>C	c.(421-423)TTT>TTC	p.F141F	uc003ekl.1_5'Flank	NM_153330	NP_699161	Q8NHS0	DNJB8_HUMAN	DnaJ homolog, subfamily B, member 8	141					protein folding		heat shock protein binding|unfolded protein binding				0				GBM - Glioblastoma multiforme(114;0.177)		TGAAGGCCGGAAATTCTCCAA	0.607													13	33					0	0	1	0	0
LOC729375	729375	broad.mit.edu	37	3	129821650	129821650	+	RNA	SNP	G	A	A	rs56088005	by1000genomes	TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:129821650G>A	uc003ene.2	-	2		c.266C>T			LOC729375_uc011ble.1_RNA					Homo sapiens cDNA FLJ42457 fis, clone BRACE2018700.												0						GGTTGCGGACGGTAAAGGCCA	0.667													8	111					0	0	1	0	0
MRPL3	11222	broad.mit.edu	37	3	131190074	131190074	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:131190074G>A	uc003eoh.2	-	7	843	c.679C>T	c.(679-681)CAG>TAG	p.Q227*	MRPL3_uc011blo.1_Nonsense_Mutation_p.Q122*|MRPL3_uc011blp.1_Nonsense_Mutation_p.Q254*	NM_007208	NP_009139	P09001	RM03_HUMAN	mitochondrial ribosomal protein L3	227					translation	mitochondrial large ribosomal subunit	RNA binding|structural constituent of ribosome				0						GTAGCAGGCTGGCCTTTAAAT	0.388													39	110					0	0	1	0	0
NPHP3	27031	broad.mit.edu	37	3	132433955	132433955	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:132433955G>A	uc003epe.1	-	5	1008	c.931C>T	c.(931-933)CAG>TAG	p.Q311*	NPHP3_uc003epf.1_Nonsense_Mutation_p.Q66*	NM_153240	NP_694972	Q7Z494	NPHP3_HUMAN	nephrocystin 3	311					maintenance of organ identity|negative regulation of canonical Wnt receptor signaling pathway|photoreceptor cell maintenance|regulation of Wnt receptor signaling pathway, planar cell polarity pathway|Wnt receptor signaling pathway	cilium	protein binding			ovary(1)	1						ATCTCAGGCTGGGTTTCATCT	0.318													42	124					0	0	1	0	0
TMEM108	66000	broad.mit.edu	37	3	133099306	133099306	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:133099306C>T	uc003eph.2	+	4	1025	c.751C>T	c.(751-753)CAG>TAG	p.Q251*	TMEM108_uc003epi.2_Nonsense_Mutation_p.Q251*|TMEM108_uc003epj.1_Nonsense_Mutation_p.Q251*|TMEM108_uc003epk.2_Intron|TMEM108_uc003epm.2_Nonsense_Mutation_p.Q202*	NM_023943	NP_076432	Q6UXF1	TM108_HUMAN	transmembrane protein 108 precursor	251	Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)	4						ACCACAGCCCCAGACAGTGGC	0.627													9	33					0	0	1	0	0
CLSTN2	64084	broad.mit.edu	37	3	140281742	140281742	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:140281742C>T	uc003etn.2	+	14	2492	c.2302C>T	c.(2302-2304)CGG>TGG	p.R768W		NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	768	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						CCGGCGTTTCCGGATTAAGTG	0.567										HNSCC(16;0.037)			20	48					0	0	1	0	0
SCHIP1	29970	broad.mit.edu	37	3	158787165	158787165	+	Translation_Start_Site	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:158787165G>A	uc003fcq.1	+	1	49	c.-56G>A	c.(-58--54)CAGTG>CAATG		IQCJ_uc003fco.2_Translation_Start_Site|IQCJ_uc010hvy.1_Translation_Start_Site|IQCJ_uc003fcp.1_Translation_Start_Site	NM_014575	NP_055390	Q9P0W5	SCHI1_HUMAN	schwannomin interacting protein 1							cytoplasm	identical protein binding|protein binding			ovary(1)|central_nervous_system(1)	2			LUSC - Lung squamous cell carcinoma(72;0.00523)|Lung(72;0.00534)			GAGGAATACAGTGTGCCAGCA	0.478													13	31					0	0	1	0	0
OTOL1	131149	broad.mit.edu	37	3	161214630	161214630	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:161214630T>A	uc011bpb.1	+	1	35	c.35T>A	c.(34-36)ATT>AAT	p.I12N		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	12						collagen					0						GCTATTTTAATTATTTTGGCT	0.338													7	27					0	0	1	0	0
LRRC15	131578	broad.mit.edu	37	3	194080470	194080470	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:194080470G>A	uc003ftu.2	-	2	1389	c.1303C>T	c.(1303-1305)CGC>TGC	p.R435C	LRRC15_uc003ftt.2_Missense_Mutation_p.R441C	NM_130830	NP_570843	Q8TF66	LRC15_HUMAN	leucine rich repeat containing 15 isoform b	435	LRRCT.|Extracellular (Potential).					integral to membrane				ovary(3)	3	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.94e-05)		AGCCAGTTGCGGAGCGGAAGG	0.562													11	28					0	0	1	0	0
SDHAP2	727956	broad.mit.edu	37	3	195400728	195400728	+	Silent	SNP	A	G	G	rs12107841	by1000genomes	TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:195400728A>G	uc003fuw.2	+	9	1218	c.24A>G	c.(22-24)CCA>CCG	p.P8P	SDHAP2_uc011btb.1_Missense_Mutation_p.S156G|SDHAP2_uc011btc.1_RNA|SDHAP2_uc003fuv.2_RNA					SubName: Full=cDNA FLJ16373 fis, clone THYMU3000269, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						GATTGTGCCCAGCCTGTACGC	0.587													4	50					0	0	1	0	0
MUC20	200958	broad.mit.edu	37	3	195453125	195453126	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:195453125_195453126CC>TT	uc010hzo.2	+	3	1264_1265	c.1138_1139CC>TT	c.(1138-1140)CCG>TTG	p.P380L	MUC20_uc010hzp.2_Missense_Mutation_p.P345L|MUC20_uc011bte.1_RNA	NM_152673	NP_689886	Q8N307	MUC20_HUMAN	mucin 20 isoform L	551	Involved in oligomerization.				protein homooligomerization	apical plasma membrane|basal plasma membrane|extracellular region|microvillus membrane					0	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)	Lung NSC(153;0.191)	Epithelial(36;1e-21)|all cancers(36;9.02e-20)|OV - Ovarian serous cystadenocarcinoma(49;1.6e-18)|Lung(62;0.000104)|LUSC - Lung squamous cell carcinoma(58;0.000128)	GBM - Glioblastoma multiforme(46;1.66e-05)		AGGAGCAGCTCCGGTCTCCATA	0.554													8	65					0	0	1	0	0
MUC4	4585	broad.mit.edu	37	3	195501064	195501064	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr3:195501064G>A	uc011bto.1	-	5	13132	c.12672C>T	c.(12670-12672)TCC>TCT	p.S4224S	MUC4_uc003fuz.2_Missense_Mutation_p.P32L|MUC4_uc003fva.2_5'UTR|MUC4_uc003fvb.2_5'UTR|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_5'UTR|MUC4_uc010hzr.2_RNA|MUC4_uc011btf.1_5'UTR|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_5'UTR|MUC4_uc011bti.1_5'UTR|MUC4_uc011btj.1_Silent_p.S93S|MUC4_uc011btk.1_5'UTR|MUC4_uc011btl.1_5'UTR|MUC4_uc011btm.1_Silent_p.S93S|MUC4_uc011btn.1_5'UTR|MUC4_uc003fvo.2_Silent_p.S116S|MUC4_uc003fvp.2_Silent_p.S65S|MUC4_uc010hzu.1_Silent_p.S964S	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1109					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		CACGGAGAGAGGAGCCAAGGG	0.662													7	25					0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3237330	3237330	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr4:3237330C>T	uc011bvq.1	+	64	8761	c.8616C>T	c.(8614-8616)ACC>ACT	p.T2872T		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	2870					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		AGGAGTCCACCCCCTCCATCA	0.577													26	32					0	0	1	0	0
DEFB131	644414	broad.mit.edu	37	4	9446267	9446267	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr4:9446267T>C	uc011bwt.1	+	1	8	c.8T>C	c.(7-9)GTC>GCC	p.V3A		NM_001040448	NP_001035538	P59861	DB131_HUMAN	defensin, beta 131 precursor	3					defense response to bacterium	extracellular region					0						ACCATGAGGGTCTTGTTTTTT	0.373													74	109					0	0	1	0	0
HSP90AB2P	391634	broad.mit.edu	37	4	13338397	13338397	+	RNA	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr4:13338397C>T	uc003gms.2	+	1		c.3361C>T				NR_003132				Homo sapiens heat shock protein 90Bb (HSP90Bb) mRNA, complete cds.											kidney(1)	1						CAAAGCTGATCTCATAAATAA	0.438													38	77					0	0	1	0	0
PCDH7	5099	broad.mit.edu	37	4	31144244	31144244	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr4:31144244G>A	uc011bxx.1	+	3	4525	c.3517G>A	c.(3517-3519)GAT>AAT	p.D1173N	PCDH7_uc011bxw.1_Missense_Mutation_p.D1126N	NM_002589	NP_002580	O60245	PCDH7_HUMAN	protocadherin 7 isoform a precursor	Error:Variant_position_missing_in_O60245_after_alignment					homophilic cell adhesion	integral to plasma membrane	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|skin(1)	4						CATGCCTGTTGATGAACGAGG	0.537													23	135					0	0	1	0	0
CHRNA9	55584	broad.mit.edu	37	4	40356304	40356304	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr4:40356304G>A	uc003gva.1	+	5	1223	c.1207G>A	c.(1207-1209)GAC>AAC	p.D403N		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	403	Cytoplasmic (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	CTTAAAGAACGACCTGGGCTG	0.483													36	46					0	0	1	0	0
ENAM	10117	broad.mit.edu	37	4	71508306	71508306	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr4:71508306G>A	uc011caw.1	+	9	1444	c.1163G>A	c.(1162-1164)AGA>AAA	p.R388K		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	388					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			CCTACTTCAAGAGGCAATTAT	0.468													55	175					0	0	1	0	0
SLC4A4	8671	broad.mit.edu	37	4	72316221	72316221	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr4:72316221G>A	uc003hfy.2	+	10	1286	c.1169G>A	c.(1168-1170)AGG>AAG	p.R390K	SLC4A4_uc010iic.2_Missense_Mutation_p.R390K|SLC4A4_uc010iib.2_Missense_Mutation_p.R390K|SLC4A4_uc003hfz.2_Missense_Mutation_p.R390K|SLC4A4_uc003hgc.3_Missense_Mutation_p.R346K|SLC4A4_uc010iid.2_5'UTR|SLC4A4_uc003hga.2_Missense_Mutation_p.R268K|SLC4A4_uc003hgb.3_Missense_Mutation_p.R346K	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	390	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			CCAGCAATTAGGATAGAGCCT	0.438													20	40					0	0	1	0	0
GK2	2712	broad.mit.edu	37	4	80328367	80328367	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr4:80328367G>A	uc003hlu.2	-	1	1006	c.988C>T	c.(988-990)CGT>TGT	p.R330C		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	330					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						CTTAGCCAACGAATAACAGCA	0.428													53	143					0	0	1	0	0
CDS1	1040	broad.mit.edu	37	4	85562048	85562048	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr4:85562048G>A	uc011ccv.1	+	10	1435	c.937G>A	c.(937-939)GAT>AAT	p.D313N	CDS1_uc010ike.1_Missense_Mutation_p.D117N	NM_001263	NP_001254	Q92903	CDS1_HUMAN	CDP-diacylglycerol synthase 1	313					signal transduction|visual perception	endoplasmic reticulum membrane|integral to membrane	diacylglycerol cholinephosphotransferase activity|phosphatidate cytidylyltransferase activity			large_intestine(2)|ovary(1)|breast(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.00101)		ATACCGAAGTGATGTAAACTC	0.368													65	158					0	0	1	0	0
FAM13A	10144	broad.mit.edu	37	4	89680035	89680035	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr4:89680035G>A	uc003hse.1	-	14	1804	c.1596C>T	c.(1594-1596)ATC>ATT	p.I532I	FAM13A_uc003hsa.1_Silent_p.I3I|FAM13A_uc003hsb.1_Silent_p.I206I|FAM13A_uc003hsd.1_Silent_p.I206I|FAM13A_uc003hsc.1_Silent_p.I192I|FAM13A_uc011cdq.1_Silent_p.I178I|FAM13A_uc003hsf.1_Silent_p.I118I|FAM13A_uc003hsg.1_Silent_p.I3I|FAM13A_uc010ikr.1_Silent_p.I28I	NM_014883	NP_055698	O94988	FA13A_HUMAN	family with sequence similarity 13, member A1	532					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|liver(1)	2						GATGCTCCTGGATCTTCATTG	0.517													21	57					0	0	1	0	0
ADH1A	124	broad.mit.edu	37	4	100205667	100205667	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr4:100205667C>T	uc003hur.1	-	5	527	c.456G>A	c.(454-456)GTG>GTA	p.V152V	uc003hum.1_Intron|ADH1A_uc011ceg.1_Silent_p.V152V|ADH1A_uc010ilf.1_5'UTR	NM_000667	NP_000658	P07327	ADH1A_HUMAN	class I alcohol dehydrogenase, alpha subunit	152					ethanol oxidation|transcription, DNA-dependent|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|protein binding|zinc ion binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(123;9.56e-08)	Fomepizole(DB01213)|NADH(DB00157)	TTTCATCCACCACTGTGTACT	0.522													27	72					0	0	1	0	0
NPNT	255743	broad.mit.edu	37	4	106863615	106863615	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr4:106863615C>T	uc003hya.2	+	8	1120	c.915C>T	c.(913-915)ATC>ATT	p.I305I	NPNT_uc011cfc.1_Silent_p.I322I|NPNT_uc011cfd.1_Silent_p.I335I|NPNT_uc011cfe.1_Silent_p.I335I|NPNT_uc010ilt.1_Silent_p.I305I|NPNT_uc011cff.1_Silent_p.I305I|NPNT_uc010ilu.1_Silent_p.I201I	NM_001033047	NP_001028219	Q6UXI9	NPNT_HUMAN	nephronectin precursor	305	Pro-rich.				cell differentiation	membrane	calcium ion binding			skin(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;5.41e-07)		TTCCTCCTATCATTACCAACA	0.458													39	107					0	0	1	0	0
TRPC3	7222	broad.mit.edu	37	4	122831503	122831503	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr4:122831503C>T	uc003ieg.2	-	6	1672	c.1598G>A	c.(1597-1599)GGA>GAA	p.G533E	TRPC3_uc010inr.2_Missense_Mutation_p.G405E|TRPC3_uc003ief.2_Missense_Mutation_p.G460E|TRPC3_uc011cgl.1_Missense_Mutation_p.G197E	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	448	Extracellular (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						TTCCCTAGGTCCTTCCAGCCA	0.458													39	100					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126411967	126411967	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr4:126411967C>T	uc003ifj.3	+	17	13990	c.13990C>T	c.(13990-13992)CCC>TCC	p.P4664S	FAT4_uc011cgp.1_Missense_Mutation_p.P2905S|FAT4_uc003ifi.1_Missense_Mutation_p.P2141S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4664	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AAGGCAATCCCCCATGCCCTT	0.512													27	73					0	0	1	0	0
C4orf29	80167	broad.mit.edu	37	4	128951697	128951697	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr4:128951697C>T	uc003ifr.2	+	12	1429	c.1111C>T	c.(1111-1113)CAA>TAA	p.Q371*	C4orf29_uc003ifs.2_Nonsense_Mutation_p.Q299*|C4orf29_uc003ift.2_Nonsense_Mutation_p.Q236*|C4orf29_uc003ifu.2_Nonsense_Mutation_p.Q236*|C4orf29_uc010inz.2_Nonsense_Mutation_p.Q202*|C4orf29_uc003ifv.2_Nonsense_Mutation_p.Q236*	NM_001039717	NP_001034806	Q0P651	CD029_HUMAN	hypothetical protein LOC80167 precursor	371						extracellular region				ovary(1)	1						TATAGTGGTTCAAGCCAAAGA	0.368													21	64					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155226333	155226333	+	Silent	SNP	A	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr4:155226333A>G	uc003inw.2	-	16	3946	c.3946T>C	c.(3946-3948)TTA>CTA	p.L1316L		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	1316	Cadherin 11.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		ATCTCGAATAATTCAAATGAA	0.353													15	15					0	0	1	0	0
FGG	2266	broad.mit.edu	37	4	155526125	155526125	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr4:155526125G>A	uc003ioj.2	-	9	1364	c.1223C>T	c.(1222-1224)ACC>ATC	p.T408I	FGG_uc003iog.2_Missense_Mutation_p.T408I|FGG_uc003ioh.2_Missense_Mutation_p.T416I|FGG_uc010ipx.2_Missense_Mutation_p.T236I|FGG_uc010ipy.2_Missense_Mutation_p.T119I|FGG_uc003ioi.2_Missense_Mutation_p.T119I|FGG_uc003iok.2_Missense_Mutation_p.T416I	NM_021870	NP_068656	P02679	FIBG_HUMAN	fibrinogen, gamma chain isoform gamma-B	408	Gamma-chain polymerization, binding amino end of another fibrin alpha chain.|Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding				0	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	CTTCATAGTGGTTTTCTTCAT	0.463													49	87					0	0	1	0	0
FGG	2266	broad.mit.edu	37	4	155530869	155530869	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr4:155530869G>A	uc003ioj.2	-	6	720	c.579C>T	c.(577-579)TAC>TAT	p.Y193Y	FGG_uc003iog.2_Silent_p.Y193Y|FGG_uc003ioh.2_Silent_p.Y201Y|FGG_uc010ipx.2_Silent_p.Y21Y|FGG_uc010ipy.2_5'UTR|FGG_uc003ioi.2_5'UTR|FGG_uc003iok.2_Silent_p.Y201Y	NM_021870	NP_068656	P02679	FIBG_HUMAN	fibrinogen, gamma chain isoform gamma-B	193	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding				0	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	GTTTAATAAAGTAAAGCCCGC	0.408													44	73					0	0	1	0	0
GRIA2	2891	broad.mit.edu	37	4	158281195	158281195	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr4:158281195G>A	uc003ipm.3	+	13	2650	c.2191G>A	c.(2191-2193)GAG>AAG	p.E731K	GRIA2_uc011cit.1_Missense_Mutation_p.E684K|GRIA2_uc003ipl.3_Missense_Mutation_p.E731K|GRIA2_uc003ipk.3_Missense_Mutation_p.E684K|GRIA2_uc010iqh.1_RNA|GRIA2_uc011ciu.1_Missense_Mutation_p.E41K|GRIA2_uc011civ.1_RNA|GRIA2_uc011ciw.1_RNA|GRIA2_uc011cix.1_Missense_Mutation_p.E41K|GRIA2_uc011ciy.1_Missense_Mutation_p.E41K|GRIA2_uc011ciz.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	731	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	CACGATGAACGAGTACATTGA	0.507													32	40					0	0	1	0	0
RXFP1	59350	broad.mit.edu	37	4	159554574	159554574	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr4:159554574A>G	uc003ipz.2	+	12	999	c.917A>G	c.(916-918)AAG>AGG	p.K306R	RXFP1_uc010iqj.1_Missense_Mutation_p.K135R|RXFP1_uc011cja.1_Missense_Mutation_p.K201R|RXFP1_uc010iqo.2_Intron|RXFP1_uc011cjb.1_Intron|RXFP1_uc010iqk.2_Missense_Mutation_p.K174R|RXFP1_uc011cjc.1_Missense_Mutation_p.K225R|RXFP1_uc011cjd.1_Missense_Mutation_p.K225R|RXFP1_uc010iql.2_Missense_Mutation_p.K150R|RXFP1_uc011cje.1_Missense_Mutation_p.K333R|RXFP1_uc010iqm.2_Missense_Mutation_p.K273R|RXFP1_uc011cjf.1_Missense_Mutation_p.K176R|RXFP1_uc010iqn.2_Missense_Mutation_p.K252R	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	306	Extracellular (Potential).|LRR 7.					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		GGAAGTAATAAGATTGAAAAT	0.313													23	39					0	0	1	0	0
DDX60L	91351	broad.mit.edu	37	4	169336585	169336585	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr4:169336585G>A	uc003irq.3	-	22	3174	c.2953C>T	c.(2953-2955)CCC>TCC	p.P985S	DDX60L_uc003irr.1_Missense_Mutation_p.P985S|DDX60L_uc003irs.1_Missense_Mutation_p.P680S	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	985							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		GCAGCACAGGGATGAAAATGA	0.348													10	22					0	0	1	0	0
TERT	7015	broad.mit.edu	37	5	1282618	1282618	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:1282618C>T	uc003jcb.1	-	3	1753	c.1695G>A	c.(1693-1695)GAG>GAA	p.E565E	TERT_uc003jbz.1_5'UTR|TERT_uc003jca.1_Silent_p.E565E|TERT_uc003jcc.1_Silent_p.E565E|TERT_uc003jcd.1_RNA|TERT_uc003jce.1_RNA	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	565					anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GAAACGTGGTCTCCGTGACAT	0.522									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				25	82					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13830235	13830235	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:13830235G>A	uc003jfd.2	-	37	6191	c.6149C>T	c.(6148-6150)TCC>TTC	p.S2050F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2050	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CAGAATAATGGAAATTTGCTG	0.398									Kartagener_syndrome				19	71					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13900333	13900333	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:13900333C>T	uc003jfd.2	-	15	2283	c.2241G>A	c.(2239-2241)AGG>AGA	p.R747R		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	747	Potential.|Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TACTGAAGTTCCTTTTGTATC	0.363									Kartagener_syndrome				43	67					0	0	1	0	0
FBXL7	23194	broad.mit.edu	37	5	15936681	15936681	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:15936681G>A	uc003jfn.1	+	4	1343	c.862G>A	c.(862-864)GAA>AAA	p.E288K		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	288	LRR 5.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						GCTGGAGGACGAAGGCCTGCA	0.622													14	34					0	0	1	0	0
C7	730	broad.mit.edu	37	5	40936475	40936475	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:40936475G>A	uc003jmh.2	+	5	430	c.316G>A	c.(316-318)GAT>AAT	p.D106N	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	106	LDL-receptor class A.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				TTGCAATGGGGATTCTGACTG	0.453													12	37					0	0	1	0	0
RGNEF	64283	broad.mit.edu	37	5	73163924	73163924	+	Splice_Site	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:73163924G>A	uc011csq.1	+	19	2309	c.2298_splice	c.e19-1	p.S766_splice	RGNEF_uc003kcx.2_Splice_Site_p.S766_splice|RGNEF_uc010izf.2_Splice_Site_p.S766_splice|RGNEF_uc011csr.1_Splice_Site_p.S453_splice	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor						cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		CTCTCTCCTAGCTTCAGGAGG	0.512													7	13					0	0	1	0	0
FAM169A	26049	broad.mit.edu	37	5	74109782	74109782	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:74109782G>A	uc003kdm.2	-	6	596	c.553C>T	c.(553-555)CTA>TTA	p.L185L	FAM169A_uc010izm.2_Intron|FAM169A_uc003kdl.2_Silent_p.L3L	NM_015566	NP_056381	Q9Y6X4	F169A_HUMAN	hypothetical protein LOC26049	185											0						TTCTTTCTTAGAAACATTGTA	0.398													52	138					0	0	1	0	0
LOC644936	644936	broad.mit.edu	37	5	79595783	79595783	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:79595783G>A	uc010jai.2	-	1	515	c.374C>T	c.(373-375)TCC>TTC	p.S125F		NR_004845				Homo sapiens cytoplasmic beta-actin pseudogene, mRNA (cDNA clone IMAGE:30378151).												0						CTTCATGATGGAGTTGAAGGT	0.512													19	68					0	0	1	0	0
FAM151B	167555	broad.mit.edu	37	5	79837609	79837609	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:79837609C>T	uc003kgv.1	+	6	932	c.789C>T	c.(787-789)AAC>AAT	p.N263N	FAM151B_uc010jal.1_RNA	NM_205548	NP_991111	Q6UXP7	F151B_HUMAN	hypothetical protein LOC167555	263											0		Lung NSC(167;0.0427)|all_lung(232;0.0464)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;8.21e-47)|Epithelial(54;8.3e-42)|all cancers(79;1.97e-36)		AACCACAAAACCATGAATTTA	0.318													9	34					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90050957	90050957	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:90050957G>A	uc003kju.2	+	55	11631	c.11535G>A	c.(11533-11535)ATG>ATA	p.M3845I	GPR98_uc003kjt.2_Missense_Mutation_p.M1551I|GPR98_uc003kjv.2_Missense_Mutation_p.M1445I	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3845	Extracellular (Potential).|Calx-beta 25.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TAATAATAATGAAAGAAAACA	0.343													15	52					0	0	1	0	0
ARRDC3	57561	broad.mit.edu	37	5	90670798	90670798	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:90670798G>A	uc003kjz.2	-	5	1051	c.811C>T	c.(811-813)CCA>TCA	p.P271S		NM_020801	NP_065852	Q96B67	ARRD3_HUMAN	arrestin domain containing 3	271					signal transduction	cytoplasm	protein binding			ovary(1)|breast(1)	2		all_cancers(142;2.22e-05)|all_epithelial(76;1.58e-07)|all_lung(232;0.000521)|Lung NSC(167;0.000548)|Ovarian(174;0.0798)|Colorectal(57;0.207)		OV - Ovarian serous cystadenocarcinoma(54;4.56e-30)|Epithelial(54;7.55e-26)|all cancers(79;3.63e-22)		GAAACTGGTGGAATTTTCAGC	0.383													29	91					0	0	1	0	0
ST8SIA4	7903	broad.mit.edu	37	5	100147736	100147736	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:100147736C>T	uc003knk.2	-	5	1223	c.895G>A	c.(895-897)GGA>AGA	p.G299R		NM_005668	NP_005659	Q92187	SIA8D_HUMAN	ST8 alpha-N-acetyl-neuraminide	299	Lumenal (Potential).				axon guidance|N-glycan processing	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			large_intestine(1)|central_nervous_system(1)	2		all_cancers(142;1.5e-07)|all_epithelial(76;1.43e-10)|Prostate(80;0.000644)|Lung NSC(167;0.0059)|all_lung(232;0.00914)|Ovarian(225;0.024)|Colorectal(57;0.09)|Breast(839;0.203)		COAD - Colon adenocarcinoma(37;0.00402)		GGCCAGAATCCATACAGGTGA	0.398													25	77					0	0	1	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101735415	101735415	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:101735415C>T	uc003knn.2	-	10	1830	c.1658G>A	c.(1657-1659)GGA>GAA	p.G553E	SLCO6A1_uc003kno.2_Missense_Mutation_p.G300E|SLCO6A1_uc003knp.2_Missense_Mutation_p.G553E|SLCO6A1_uc003knq.2_Missense_Mutation_p.G491E	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	553	Extracellular (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		AGTTATTAATCCTTCTTTAAT	0.323													30	62					0	0	1	0	0
RAB9BP1	9366	broad.mit.edu	37	5	104435624	104435624	+	RNA	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:104435624G>A	uc003kok.2	+	1		c.450G>A				NR_000039				Homo sapiens RAB9, member RAS oncogene family, pseudogene 1 (RAB9P1), non-coding RNA.												0						TCCTTAATTTGAAACAAGTGC	0.463													18	39					0	0	1	0	0
CAMK4	814	broad.mit.edu	37	5	110710562	110710562	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:110710562C>T	uc011cvj.1	+	4	354	c.255C>T	c.(253-255)ATC>ATT	p.I85I	CAMK4_uc003kpf.2_Silent_p.I85I|CAMK4_uc010jbv.2_Intron	NM_001744	NP_001735	Q16566	KCC4_HUMAN	calcium/calmodulin-dependent protein kinase IV	85	Protein kinase.				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|synaptic transmission	cytosol|nucleoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(3)|lung(2)	5		all_cancers(142;1.49e-05)|all_epithelial(76;1.82e-07)|Prostate(80;0.00964)|all_lung(232;0.0181)|Lung NSC(167;0.0298)|Ovarian(225;0.0446)|Colorectal(57;0.0478)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;3.79e-08)|Epithelial(69;5.29e-08)|all cancers(49;1.1e-05)|COAD - Colon adenocarcinoma(37;0.109)		ACAAAAAAATCGTAAGAACTG	0.378													16	57					0	0	1	0	0
MCC	4163	broad.mit.edu	37	5	112399743	112399743	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:112399743G>A	uc003kqj.3	-	12	2111	c.1581C>T	c.(1579-1581)GCC>GCT	p.A527A	MCC_uc003kqk.3_RNA|MCC_uc003kql.3_Silent_p.A717A|MCC_uc011cwb.1_Silent_p.A527A	NM_002387	NP_002378	P23508	CRCM_HUMAN	mutated in colorectal cancers isoform 2	527					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane	protein binding|receptor activity			ovary(1)	1		all_cancers(142;5.89e-08)|all_epithelial(76;3.57e-11)|all_lung(232;0.000605)|Lung NSC(810;0.000697)|Colorectal(10;0.00146)|Prostate(80;0.00174)|Ovarian(225;0.0175)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(64;2.04e-54)|Epithelial(69;9.69e-49)|all cancers(49;6.25e-44)|COAD - Colon adenocarcinoma(37;0.0432)|Colorectal(14;0.0766)		CCACGGCAAAGGCTCCCCCAC	0.622													21	58					0	0	1	0	0
TSSK1B	83942	broad.mit.edu	37	5	112770528	112770528	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:112770528G>T	uc003kqm.2	-	1	201	c.9C>A	c.(7-9)GAC>GAA	p.D3E	MCC_uc003kql.3_Intron	NM_032028	NP_114417	Q9BXA7	TSSK1_HUMAN	testis-specific serine kinase 1	3					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|skin(2)|stomach(1)	5		all_cancers(142;0.0138)|all_epithelial(76;0.000445)|Colorectal(10;0.00814)|Prostate(80;0.0115)|Ovarian(225;0.156)		Epithelial(69;4.15e-08)|OV - Ovarian serous cystadenocarcinoma(64;4.49e-08)|all cancers(49;3.2e-06)|COAD - Colon adenocarcinoma(37;0.0371)|Colorectal(14;0.0449)		GGACAGCAGCGTCATCCATGG	0.547													16	34					1.37285e-15	1.39001e-15	1	1	0
SNCAIP	9627	broad.mit.edu	37	5	121758652	121758652	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:121758652C>T	uc003ksw.1	+	4	426	c.220C>T	c.(220-222)CGC>TGC	p.R74C	SNCAIP_uc011cwl.1_Intron|SNCAIP_uc010jct.2_Missense_Mutation_p.R74C|SNCAIP_uc003ksx.1_Missense_Mutation_p.R121C|SNCAIP_uc003ksy.1_Intron|SNCAIP_uc003ksz.1_Intron|SNCAIP_uc010jcu.2_Intron|SNCAIP_uc011cwm.1_Intron|SNCAIP_uc003kta.1_Intron|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Intron|SNCAIP_uc010jcx.1_Missense_Mutation_p.R74C	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	74					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		CAGTAAGTTCCGCCCAGTGAA	0.443													25	65					0	0	1	0	0
PCBD2	84105	broad.mit.edu	37	5	134294749	134294749	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:134294749G>A	uc010jdz.2	+	3	256	c.236G>A	c.(235-237)CGA>CAA	p.R79Q	PCBD2_uc011cxw.1_Missense_Mutation_p.R79Q	NM_032151	NP_115527	Q9H0N5	PHS2_HUMAN	pterin-4 alpha-carbinolamine dehydratase 2	79					positive regulation of transcription, DNA-dependent|tetrahydrobiopterin biosynthetic process		4-alpha-hydroxytetrahydrobiopterin dehydratase activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TTTATGTCCCGAGTTGCCCTA	0.413													20	60					0	0	1	0	0
TGFBI	7045	broad.mit.edu	37	5	135382142	135382142	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:135382142C>T	uc003lbf.3	+	4	578	c.417C>T	c.(415-417)ACC>ACT	p.T139T	TGFBI_uc003lbg.3_5'UTR|TGFBI_uc003lbh.3_5'UTR|TGFBI_uc011cyb.1_5'UTR|TGFBI_uc010jed.2_5'Flank	NM_000358	NP_000349	Q15582	BGH3_HUMAN	transforming growth factor, beta-induced, 68kDa	139	FAS1 1.				angiogenesis|cell adhesion|cell proliferation|negative regulation of cell adhesion|response to stimulus|visual perception	extracellular space|proteinaceous extracellular matrix	integrin binding			breast(3)|ovary(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GCAGCTTCACCATCTTCGCCC	0.622													3	24					0	0	1	0	0
CDC25C	995	broad.mit.edu	37	5	137622874	137622874	+	Missense_Mutation	SNP	A	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:137622874A>C	uc003lcp.1	-	11	1281	c.1010T>G	c.(1009-1011)CTG>CGG	p.L337R	CDC25C_uc003lcq.1_Missense_Mutation_p.L264R|CDC25C_uc003lcr.1_Missense_Mutation_p.L337R|CDC25C_uc011cyp.1_Missense_Mutation_p.L354R|CDC25C_uc003lcs.1_Missense_Mutation_p.L415R	NM_001790	NP_001781	P30307	MPIP3_HUMAN	cell division cycle 25C isoform a	337	HIV-1 Vpr binding site.|Rhodanese.				cell cycle checkpoint|cell division|cell proliferation|DNA replication|G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of mitosis|traversing start control point of mitotic cell cycle	cytosol|nucleoplasm	protein tyrosine phosphatase activity|WW domain binding			lung(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			GTGTCCTCCCAGATACTCATA	0.473													15	59					0	0	1	0	0
MATR3	9782	broad.mit.edu	37	5	138658408	138658408	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:138658408G>A	uc003ldu.2	+	15	2327	c.1900G>A	c.(1900-1902)GAT>AAT	p.D634N	MATR3_uc010jfb.2_Missense_Mutation_p.D634N|MATR3_uc003ldt.2_Missense_Mutation_p.D296N|MATR3_uc003ldw.2_Missense_Mutation_p.D634N|MATR3_uc003ldx.2_Missense_Mutation_p.D634N|MATR3_uc010jfc.2_Missense_Mutation_p.D634N|MATR3_uc003ldy.2_Missense_Mutation_p.D311N|MATR3_uc011czb.1_Missense_Mutation_p.D346N|MATR3_uc003ldz.2_Missense_Mutation_p.D634N|MATR3_uc003lea.2_Missense_Mutation_p.D634N|MATR3_uc003leb.2_Missense_Mutation_p.D296N|MATR3_uc003lec.2_Missense_Mutation_p.D311N	NM_199189	NP_954659	P43243	MATR3_HUMAN	matrin 3	634						nuclear inner membrane|nuclear matrix	nucleotide binding|protein binding|RNA binding|structural molecule activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			GTCCGGTGAAGATGGTGAGAA	0.428													25	40					0	0	1	0	0
CXXC5	51523	broad.mit.edu	37	5	139060139	139060139	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:139060139G>T	uc010jfg.1	+	2	321	c.31G>T	c.(31-33)GCC>TCC	p.A11S	CXXC5_uc003let.2_Missense_Mutation_p.A11S	NM_016463	NP_057547	Q7LFL8	CXXC5_HUMAN	CXXC finger 5	11					positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|nucleus	DNA binding|signal transducer activity|zinc ion binding			central_nervous_system(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCCCAGGATGCCGgcggcag	0.522													4	10					5.9392e-07	5.96374e-07	1	1	0
PCDHB17	54661	broad.mit.edu	37	5	140536963	140536963	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:140536963G>A	uc003lis.2	+	1	1384	c.1384G>A	c.(1384-1386)GAG>AAG	p.E462K		NR_001280				SubName: Full=Protocadherin-psi1;												0						GTTCGTCCGCGAGAACAACAG	0.612													52	169					0	0	1	0	0
PCDHB16	57717	broad.mit.edu	37	5	140562818	140562818	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:140562818C>T	uc003liv.2	+	1	1839	c.684C>T	c.(682-684)GTC>GTT	p.V228V	PCDHB16_uc010jfw.1_Intron	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	228	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTGCTCAGGTCCGTATTGAAG	0.522													32	78					0	0	1	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140720533	140720533	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:140720533C>T	uc003ljk.1	+	1	2180	c.1995C>T	c.(1993-1995)GCC>GCT	p.A665A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Silent_p.A665A	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	665	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGCCGTGGCCGACAGGATCC	0.682													36	92					0	0	1	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140753756	140753756	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:140753756C>T	uc003ljy.1	+	1	106	c.106C>T	c.(106-108)CCC>TCC	p.P36S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Missense_Mutation_p.P36S	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	36	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTACTCTATTCCCGAGGAGCT	0.662													9	39					0	0	1	0	0
GEMIN5	25929	broad.mit.edu	37	5	154267904	154267904	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:154267904G>A	uc003lvx.3	-	28	4476	c.4393C>T	c.(4393-4395)CTC>TTC	p.L1465F	GEMIN5_uc011ddk.1_Missense_Mutation_p.L1464F	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	1465					ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			AGCAGGACGAGGCAGCACTCC	0.537													24	64					0	0	1	0	0
CYFIP2	26999	broad.mit.edu	37	5	156816406	156816406	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:156816406C>T	uc003lwq.2	+	31	3555	c.3417C>T	c.(3415-3417)ATC>ATT	p.I1139I	CYFIP2_uc011ddn.1_Silent_p.I1113I|CYFIP2_uc011ddo.1_Silent_p.I943I|CYFIP2_uc003lwr.2_Silent_p.I1139I|CYFIP2_uc003lws.2_Silent_p.I1139I|CYFIP2_uc003lwt.2_Silent_p.I1042I|CYFIP2_uc011ddp.1_Silent_p.I873I|CYFIP2_uc003lwv.2_Silent_p.I94I	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	1164					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGTACTGCATCCCTGTGGGAA	0.622													7	22					0	0	1	0	0
AACSL	729522	broad.mit.edu	37	5	178199631	178199631	+	RNA	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:178199631C>T	uc011dgk.1	-	4		c.258G>A			AACSL_uc011dgl.1_RNA|AACSL_uc003mjk.2_RNA	NR_024035				Homo sapiens acetoacetyl-CoA synthetase-like, mRNA (cDNA clone IMAGE:3945810), partial cds.												0						CAAAGGAGTCCACTGTGGAGA	0.607													4	13					0	0	1	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178548751	178548751	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr5:178548751C>T	uc003mjw.2	-	21	3089	c.3089G>A	c.(3088-3090)CGA>CAA	p.R1030Q		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1030					collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		TGAGATGTTTCCTAGAGGGAG	0.667													41	142					0	0	1	0	0
ATXN1	6310	broad.mit.edu	37	6	16326932	16326932	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr6:16326932G>A	uc003nbt.2	-	8	2581	c.1610C>T	c.(1609-1611)GCC>GTC	p.A537V	ATXN1_uc010jpi.2_Missense_Mutation_p.A537V|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	537	Self-association.				cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				GGTGACCAGGGCCTCAGGGTT	0.677													13	104					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28542786	28542786	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr6:28542786C>T	uc003nlo.2	-	3	2314	c.1696G>A	c.(1696-1698)GAA>AAA	p.E566K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	566	Potential.				DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ATGTTTTCTTCATACTGGGCT	0.403													46	90					0	0	1	0	0
TRIM10	10107	broad.mit.edu	37	6	30124747	30124747	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr6:30124747G>A	uc003npo.3	-	5	940	c.864C>T	c.(862-864)CTC>CTT	p.L288L	TRIM10_uc003npn.2_Silent_p.L288L	NM_006778	NP_006769	Q9UDY6	TRI10_HUMAN	tripartite motif-containing 10 isoform 1	288						cytoplasm	zinc ion binding				0						TCTGCAGCGGGAGGGCCTGCT	0.453													20	81					0	0	1	0	0
TAP1	6890	broad.mit.edu	37	6	32821443	32821443	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr6:32821443C>T	uc003ocg.2	-	1	306	c.151G>A	c.(151-153)GGC>AGC	p.G51S	TAP1_uc011dqi.1_5'Flank|PSMB9_uc011dqj.1_5'Flank|PSMB9_uc003sga.2_5'Flank	NM_000593	NP_000584	Q03518	TAP1_HUMAN	transporter 1, ATP-binding cassette, sub-family	51					antigen processing and presentation of endogenous peptide antigen via MHC class I|cytosol to ER transport|intracellular transport of viral proteins in host cell|positive regulation of T cell mediated cytotoxicity	cytosol|plasma membrane|TAP complex	ADP binding|ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|protein homodimerization activity|TAP1 binding|TAP2 binding|tapasin binding			skin(1)	1						CGGTCCCGGCCGGGCCTGGGA	0.746													6	10					0	0	1	0	0
SYNGAP1	8831	broad.mit.edu	37	6	33409113	33409113	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr6:33409113C>T	uc011dri.1	+	12	2272	c.2077C>T	c.(2077-2079)CAT>TAT	p.H693Y	SYNGAP1_uc010juy.2_Missense_Mutation_p.H678Y|SYNGAP1_uc010juz.2_Missense_Mutation_p.H405Y	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	693					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						CTCCACACTGCATGCCCTACT	0.552													6	76					0	0	1	0	0
ITPR3	3710	broad.mit.edu	37	6	33626514	33626515	+	Missense_Mutation	DNP	AC	GT	GT	rs2296344		TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr6:33626514_33626515AC>GT	uc011drk.1	+	5	656_657	c.437_438AC>GT	c.(436-438)AAC>AGT	p.N146S		NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	146	MIR 1.|Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						CTGGAGAAGAACGCCATGCGGG	0.614													45	174					0	0	1	0	0
PNPLA1	285848	broad.mit.edu	37	6	36269880	36269880	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr6:36269880G>A	uc010jwf.2	+	6	1018	c.1018G>A	c.(1018-1020)GAG>AAG	p.E340K	PNPLA1_uc003olw.1_Missense_Mutation_p.E245K|PNPLA1_uc010jwe.1_Missense_Mutation_p.E254K	NM_001145717	NP_001139189	Q8N8W4	PLPL1_HUMAN	patatin-like phospholipase domain containing 1	340	Pro-rich.				lipid catabolic process		hydrolase activity			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4						ATTCACATGCGAGTCACCTGT	0.557											OREG0017382	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	101					0	0	1	0	0
FGD2	221472	broad.mit.edu	37	6	36979536	36979536	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr6:36979536G>A	uc010jwp.1	+	4	604	c.433G>A	c.(433-435)GAT>AAT	p.D145N	FGD2_uc003ong.2_5'UTR|FGD2_uc011dtv.1_Intron|FGD2_uc003oni.1_5'Flank	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	145	DH.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						CTTCCCAGAGGATGTGGTCAG	0.582													32	78					0	0	1	0	0
DAAM2	23500	broad.mit.edu	37	6	39832813	39832813	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr6:39832813G>A	uc003oow.2	+	5	547	c.391G>A	c.(391-393)GAA>AAA	p.E131K	DAAM2_uc010jxc.2_Missense_Mutation_p.E131K|DAAM2_uc003oox.2_Missense_Mutation_p.E131K	NM_015345	NP_056160	Q86T65	DAAM2_HUMAN	dishevelled associated activator of	131	GBD/FH3.				actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)|skin(1)	3	Ovarian(28;0.0355)|Colorectal(47;0.196)					CCAAGTCGTGGAAGACCTGAA	0.562											OREG0017416	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	17					0	0	1	0	0
TTBK1	84630	broad.mit.edu	37	6	43222803	43222803	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr6:43222803G>A	uc003ouq.1	+	7	872	c.593G>A	c.(592-594)GGG>GAG	p.G198E		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	198	Protein kinase.					cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			AATGTGGCCGGGTTTCGAGGA	0.597													17	36					0	0	1	0	0
TTBK1	84630	broad.mit.edu	37	6	43251398	43251398	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr6:43251398G>A	uc003ouq.1	+	14	3199	c.2920G>A	c.(2920-2922)GGG>AGG	p.G974R		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	974						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			TGTGGAGGAGGGGGCCCGAGC	0.692													16	40					0	0	1	0	0
ZNF318	24149	broad.mit.edu	37	6	43316185	43316185	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr6:43316185G>C	uc003oux.2	-	6	3027	c.2949C>G	c.(2947-2949)AAC>AAG	p.N983K	ZNF318_uc003ouw.2_RNA	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	983					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			TATCGAAGATGTTAATTCCCA	0.428													72	251					0	0	1	0	0
CD2AP	23607	broad.mit.edu	37	6	47541893	47541893	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr6:47541893G>A	uc003oyw.2	+	6	1091	c.635G>A	c.(634-636)CGA>CAA	p.R212Q		NM_012120	NP_036252	Q9Y5K6	CD2AP_HUMAN	CD2-associated protein	212					cell division|mitosis|protein complex assembly|signal transduction|substrate-dependent cell migration, cell extension	cytoplasm|filamentous actin|nucleolus|plasma membrane|ruffle	SH3 domain binding|structural constituent of cytoskeleton			ovary(1)|skin(1)	2			Lung(136;0.105)|LUSC - Lung squamous cell carcinoma(51;0.138)			AAGAAAATTCGAGGAATTGGA	0.408													41	110					0	0	1	0	0
PKHD1	5314	broad.mit.edu	37	6	51712650	51712650	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr6:51712650G>A	uc003pah.1	-	50	8306	c.8030C>T	c.(8029-8031)CCA>CTA	p.P2677L	PKHD1_uc010jzn.1_Missense_Mutation_p.P660L|PKHD1_uc003pai.2_Missense_Mutation_p.P2677L	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	2677	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					TGGAAGAAATGGAAAAGACAG	0.483													34	106					0	0	1	0	0
PRIM2	5558	broad.mit.edu	37	6	57372336	57372336	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr6:57372336C>T	uc003pdx.2	+	8	829	c.742C>T	c.(742-744)CCT>TCT	p.P248S		NM_000947	NP_000938	P49643	PRI2_HUMAN	DNA primase polypeptide 2	248					DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	4 iron, 4 sulfur cluster binding|DNA binding|DNA primase activity|metal ion binding				0				Colorectal(6;0.041)|READ - Rectum adenocarcinoma(7;0.193)		AAGACTTCAGCCTCTGCTCAA	0.418													5	66					0	0	1	0	0
FILIP1	27145	broad.mit.edu	37	6	76024398	76024398	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr6:76024398G>A	uc003pia.2	-	5	1523	c.1150C>T	c.(1150-1152)CGA>TGA	p.R384*	FILIP1_uc003phy.1_Nonsense_Mutation_p.R384*|FILIP1_uc003phz.2_Nonsense_Mutation_p.R285*|FILIP1_uc010kbe.2_Nonsense_Mutation_p.R387*|FILIP1_uc003pib.1_Nonsense_Mutation_p.R136*	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	384	Potential.							p.R384Q(1)		skin(3)|ovary(1)	4						ACACGCTTTCGAAGATTTTCC	0.418													42	194					0	0	1	0	0
HTR1E	3354	broad.mit.edu	37	6	87725903	87725904	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr6:87725903_87725904CC>TT	uc003pli.2	+	2	1554_1555	c.851_852CC>TT	c.(850-852)ACC>ATT	p.T284I		NM_000865	NP_000856	P28566	5HT1E_HUMAN	5-hydroxytryptamine (serotonin) receptor 1E	284	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	protein binding|serotonin binding|serotonin receptor activity			ovary(2)|skin(1)	3		all_cancers(76;7.11e-06)|Acute lymphoblastic leukemia(125;1.2e-09)|Prostate(29;3.51e-09)|all_hematologic(105;7.43e-06)|all_epithelial(107;0.00819)		BRCA - Breast invasive adenocarcinoma(108;0.055)	Eletriptan(DB00216)	ATCTCTAGCACCAGGGAACGGA	0.51													90	120					0	0	1	0	0
REV3L	5980	broad.mit.edu	37	6	111693857	111693857	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr6:111693857C>T	uc003puy.3	-	13	6024	c.5701G>A	c.(5701-5703)GAG>AAG	p.E1901K	REV3L_uc003pux.3_Missense_Mutation_p.E1823K|REV3L_uc003puz.3_Missense_Mutation_p.E1823K	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	1901					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		TAAATAGTCTCAGACAGGTCA	0.423								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					56	83					0	0	1	0	0
GOPC	57120	broad.mit.edu	37	6	117898627	117898627	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr6:117898627G>A	uc003pxu.2	-	3	688	c.458C>T	c.(457-459)CCC>CTC	p.P153L	GOPC_uc003pxv.2_Intron|GOPC_uc010keg.1_5'Flank	NM_020399	NP_065132	Q9HD26	GOPC_HUMAN	golgi associated PDZ and coiled-coil motif	153	Potential.				apical protein localization|cytoplasmic sequestering of CFTR protein|ER to Golgi vesicle-mediated transport|Golgi to plasma membrane transport|protein homooligomerization|protein transport	cell junction|dendrite|Golgi membrane|postsynaptic density|postsynaptic membrane|trans-Golgi network transport vesicle	cystic fibrosis transmembrane conductance regulator binding			ovary(1)	1		all_cancers(87;0.00844)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0363)|OV - Ovarian serous cystadenocarcinoma(136;0.0821)|all cancers(137;0.0976)		CTCCACAGAGGGGCCAGACTT	0.308			O	ROS1	glioblastoma								15	14					0	0	1	0	0
C6orf192	116843	broad.mit.edu	37	6	133100506	133100506	+	Silent	SNP	G	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr6:133100506G>T	uc003qdw.1	-	7	848	c.696C>A	c.(694-696)ATC>ATA	p.I232I	C6orf192_uc010kgd.1_RNA|C6orf192_uc011eco.1_Silent_p.I106I	NM_052831	NP_439896	Q6NT16	CF192_HUMAN	hypothetical protein LOC116843	232	Helical; (Potential).				transmembrane transport	integral to membrane				ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(155;0.00303)|GBM - Glioblastoma multiforme(226;0.0265)		TGGGTAAAGCGATCAGTTTCC	0.378													35	42					1.4065e-29	1.43604e-29	1	1	0
NOX3	50508	broad.mit.edu	37	6	155764442	155764442	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr6:155764442C>T	uc003qqm.2	-	5	554	c.451G>A	c.(451-453)GAG>AAG	p.E151K		NM_015718	NP_056533	Q9HBY0	NOX3_HUMAN	NADPH oxidase 3	151	Ferric oxidoreductase.|Extracellular (Potential).						electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			ovary(1)	1		Breast(66;0.0183)		OV - Ovarian serous cystadenocarcinoma(155;2.18e-12)|BRCA - Breast invasive adenocarcinoma(81;0.00815)		AGGTAGCTCTCGTTAGGGGTG	0.562													15	16					0	0	1	0	0
CARD11	84433	broad.mit.edu	37	7	2946352	2946353	+	Missense_Mutation	DNP	CT	TC	TC			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:2946352_2946353CT>TC	uc003smv.2	-	25	3788_3789	c.3384_3385AG>GA	c.(3382-3387)GTAGAG>GTGAAG	p.E1129K		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	1129	Guanylate kinase-like.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		AGCAGCTCCTCTACGCTGCCCC	0.663			Mis		DLBCL								23	65					0	0	1	0	0
OCM	654231	broad.mit.edu	37	7	5922155	5922155	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:5922155C>T	uc003spe.3	+	2	185	c.93C>T	c.(91-93)TTC>TTT	p.F31F		NM_001097622	NP_001091091	P0CE72	ONCO_HUMAN	oncomodulin	31							calcium ion binding				0		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0978)|OV - Ovarian serous cystadenocarcinoma(56;2.11e-14)		AAAAATTCTTCCAGACATCAG	0.458													84	215					0	0	1	0	0
THSD7A	221981	broad.mit.edu	37	7	11446665	11446665	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:11446665G>A	uc003ssf.3	-	20	4186	c.3934C>T	c.(3934-3936)CGA>TGA	p.R1312*		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	1312	Extracellular (Potential).|TSP type-1 13.					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		GTCACTGTTCGTCTTCGGATC	0.453										HNSCC(18;0.044)			8	27					0	0	1	0	0
TMEM196	256130	broad.mit.edu	37	7	19765341	19765341	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:19765341C>T	uc011jyg.1	-	3	340	c.255G>A	c.(253-255)CTG>CTA	p.L85L	TMEM196_uc003sur.2_RNA	NM_152774	NP_689987	Q5HYL7	TM196_HUMAN	transmembrane protein 196	91	Helical; (Potential).					integral to membrane					0						ACTGAAAATTCAGGATGCCCC	0.493													23	70					0	0	1	0	0
STK31	56164	broad.mit.edu	37	7	23825111	23825111	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:23825111C>T	uc003sws.3	+	18	2230	c.2163C>T	c.(2161-2163)CTC>CTT	p.L721L	STK31_uc003swt.3_Silent_p.L698L|STK31_uc011jze.1_Silent_p.L721L|STK31_uc010kuq.2_Silent_p.L698L|STK31_uc003swv.1_5'Flank	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	721	Protein kinase.|ATP (By similarity).						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						CTGGTGGTCTCCTTACAATGA	0.393													49	147					0	0	1	0	0
CRHR2	1395	broad.mit.edu	37	7	30701805	30701805	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:30701805C>T	uc003tbn.2	-	7	969	c.725G>A	c.(724-726)TGG>TAG	p.W242*	CRHR2_uc010kvw.1_Nonsense_Mutation_p.W242*|CRHR2_uc010kvx.1_Nonsense_Mutation_p.W241*|CRHR2_uc010kvy.1_Nonsense_Mutation_p.W78*|CRHR2_uc003tbo.2_Nonsense_Mutation_p.W228*|CRHR2_uc003tbp.2_Nonsense_Mutation_p.W269*	NM_001883	NP_001874	Q13324	CRFR2_HUMAN	corticotropin releasing hormone receptor 2	242	Helical; Name=4; (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	corticotrophin-releasing factor receptor activity|protein binding			lung(2)|ovary(1)|skin(1)	4						GCCGATGGCCCAGGCGACGAT	0.562													24	65					0	0	1	0	0
OGDH	4967	broad.mit.edu	37	7	44747192	44747192	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:44747192C>T	uc003tln.2	+	22	2917	c.2808C>T	c.(2806-2808)TTC>TTT	p.F936F	OGDH_uc011kbx.1_Silent_p.F932F|OGDH_uc011kby.1_Silent_p.F786F|OGDH_uc003tlp.2_Silent_p.F947F|OGDH_uc011kbz.1_Silent_p.F731F	NM_002541	NP_002532	Q02218	ODO1_HUMAN	oxoglutarate dehydrogenase isoform 1 precursor	936					glycolysis|lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|mitochondrial membrane	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			upper_aerodigestive_tract(1)|ovary(1)	2					NADH(DB00157)	TGTCGCCATTCCCCTTTGACC	0.547													53	142					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	63809491	63809491	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:63809491G>A	uc011kdo.1	+	4	1387	c.1250G>A	c.(1249-1251)AGA>AAA	p.R417K						SubName: Full=cDNA FLJ57041, moderately similar to Zinc finger protein 92;																		AGACATAAGAGAATTCATACT	0.383													7	12					0	0	1	0	0
PMS2L11	441263	broad.mit.edu	37	7	76610427	76610427	+	RNA	SNP	C	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:76610427C>G	uc003ufw.3	+	1		c.289C>G			PMS2L11_uc011kgn.1_RNA	NR_023383				Homo sapiens cDNA FLJ59034 complete cds, moderately similar to Protein deltex-2.												0						CCCTCACTCTCCGGGGCCCGG	0.672													9	71					0	0	1	0	0
LOC100132832	100132832	broad.mit.edu	37	7	76681226	76681226	+	RNA	SNP	G	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:76681226G>C	uc003ufy.2	+	5		c.1203G>C				NR_028058				Homo sapiens cDNA FLJ59034 complete cds, moderately similar to Protein deltex-2.												0						TGTCACACTTGAAGGAGGCAG	0.453													3	6					0	0	1	0	0
FGL2	10875	broad.mit.edu	37	7	76826089	76826089	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:76826089C>T	uc003ugb.2	-	2	867	c.827G>A	c.(826-828)GGA>GAA	p.G276E	CCDC146_uc003ufz.1_Intron|CCDC146_uc003uga.2_Intron	NM_006682	NP_006673	Q14314	FGL2_HUMAN	fibrinogen-like 2 precursor	276	Fibrinogen C-terminal.				signal transduction	fibrinogen complex	receptor binding			skin(2)	2						TCTGAGGTTTCCAAAGCCTGC	0.473													45	133					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82581636	82581636	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:82581636C>T	uc003uhx.2	-	5	8922	c.8633G>A	c.(8632-8634)GGT>GAT	p.G2878D	PCLO_uc003uhv.2_Missense_Mutation_p.G2878D|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2809					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ATTTGTGACACCAACAGGAGG	0.463													29	87					0	0	1	0	0
SAMD9	54809	broad.mit.edu	37	7	92732551	92732551	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:92732551C>T	uc003umf.2	-	3	3116	c.2860G>A	c.(2860-2862)GAA>AAA	p.E954K	SAMD9_uc003umg.2_Missense_Mutation_p.E954K	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	954						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			TCAAATTTTTCTGTCCCCCAG	0.398													35	67					0	0	1	0	0
PTCD1	26024	broad.mit.edu	37	7	99032606	99032606	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:99032606T>A	uc003uqh.2	-	2	391	c.260A>T	c.(259-261)GAG>GTG	p.E87V	PTCD1_uc011kiw.1_Missense_Mutation_p.E136V	NM_015545	NP_056360	O75127	PTCD1_HUMAN	pentatricopeptide repeat domain 1	87										ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			CCCAAAACTCTCCTCCTCCTC	0.602													40	105					0	0	1	0	0
TAF6	6878	broad.mit.edu	37	7	99709600	99709601	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:99709600_99709601GT>AA	uc003uti.2	-	8	823_824	c.742_743AC>TT	c.(742-744)ACG>TTG	p.T248L	TAF6_uc003utg.2_Missense_Mutation_p.T170L|TAF6_uc003uth.2_Missense_Mutation_p.T305L|TAF6_uc003utk.2_Missense_Mutation_p.T248L|TAF6_uc011kji.1_Missense_Mutation_p.T285L|TAF6_uc003utj.2_Missense_Mutation_p.T238L|TAF6_uc003utl.2_Missense_Mutation_p.T248L|TAF6_uc003utm.2_Missense_Mutation_p.T248L|TAF6_uc003utn.1_RNA	NM_139315	NP_647476	P49848	TAF6_HUMAN	TBP-associated factor 6 isoform alpha	248					negative regulation of cell cycle|negative regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|MLL1 complex|transcription factor TFIID complex|transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TCCAGGGTCCGTGGCAATGCTT	0.604													13	33					0	0	1	0	0
EPHB4	2050	broad.mit.edu	37	7	100417783	100417783	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:100417783G>A	uc003uwn.1	-	5	1435	c.944C>T	c.(943-945)CCC>CTC	p.P315L	EPHB4_uc003uwm.1_Missense_Mutation_p.P222L|EPHB4_uc010lhj.1_Missense_Mutation_p.P315L|EPHB4_uc011kkf.1_Missense_Mutation_p.P315L|EPHB4_uc011kkg.1_Intron|EPHB4_uc011kkh.1_Missense_Mutation_p.P315L	NM_004444	NP_004435	P54760	EPHB4_HUMAN	EPH receptor B4 precursor	315	Extracellular (Potential).|Cys-rich.				cell proliferation|organ morphogenesis|regulation of angiogenesis	cell surface|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(4)|stomach(3)|skin(3)|central_nervous_system(2)|ovary(2)|breast(1)	15	Lung NSC(181;0.041)|all_lung(186;0.0581)					TGCACCCCGGGGGTCTGTGCG	0.642													26	66					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103183261	103183261	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:103183261G>A	uc003vca.2	-	43	6748	c.6588C>T	c.(6586-6588)ATC>ATT	p.I2196I	RELN_uc010liz.2_Silent_p.I2196I	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2196					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CACTAGAAAGGATTCCACACT	0.383													37	111					0	0	1	0	0
LAMB4	22798	broad.mit.edu	37	7	107746996	107746996	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:107746996G>A	uc010ljo.1	-	7	697	c.613C>T	c.(613-615)CCC>TCC	p.P205S	LAMB4_uc003vey.2_Missense_Mutation_p.P205S	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	205	Laminin N-terminal.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						TCAAAACTGGGATCCAAAACT	0.269													8	45					0	0	1	0	0
RNF148	378925	broad.mit.edu	37	7	122341965	122341965	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:122341965G>A	uc003vkk.1	-	1	1057	c.840C>T	c.(838-840)TTC>TTT	p.F280F	CADPS2_uc010lkp.2_Intron|CADPS2_uc010lkq.2_Intron|RNF133_uc003vkj.1_5'Flank|RNF148_uc010lkr.1_3'UTR	NM_198085	NP_932351	Q8N7C7	RN148_HUMAN	ring finger protein 148 precursor	280	RING-type; atypical.					integral to membrane	zinc ion binding				0						ATGCCTTATGGAAAAAATGTT	0.398													50	73					0	0	1	0	0
CCDC136	64753	broad.mit.edu	37	7	128445894	128445894	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:128445894G>A	uc003vnv.1	+	7	1395	c.1028G>A	c.(1027-1029)AGG>AAG	p.R343K	CCDC136_uc003vnu.1_Missense_Mutation_p.R381K|CCDC136_uc003vnw.1_Missense_Mutation_p.R343K|CCDC136_uc003vnx.1_Missense_Mutation_p.R159K|CCDC136_uc010llq.1_5'UTR|CCDC136_uc003vny.1_5'Flank	NM_022742	NP_073579	Q96JN2	CC136_HUMAN	coiled-coil domain containing 136	343						integral to membrane	protein binding			ovary(2)	2						CGGCTGCAGAGGGAGCTCAAG	0.567													18	32					0	0	1	0	0
WDR91	29062	broad.mit.edu	37	7	134871889	134871889	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:134871889G>A	uc003vsp.2	-	14	1976	c.1914C>T	c.(1912-1914)CTC>CTT	p.L638L	WDR91_uc010lmq.2_Silent_p.L227L|WDR91_uc010lmr.2_RNA	NM_014149	NP_054868	A4D1P6	WDR91_HUMAN	WD repeat domain 91	638	WD 5.									breast(2)|ovary(1)|skin(1)	4						CGGATACCTTGAGGCCACTCT	0.602													20	94					0	0	1	0	0
TTC26	79989	broad.mit.edu	37	7	138849938	138849938	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:138849938C>T	uc003vus.2	+	9	967	c.853C>T	c.(853-855)CCT>TCT	p.P285S	TTC26_uc011kqm.1_Missense_Mutation_p.P179S|TTC26_uc003vur.3_Missense_Mutation_p.P285S|TTC26_uc011kqn.1_Missense_Mutation_p.P285S|TTC26_uc011kqo.1_Missense_Mutation_p.P254S|TTC26_uc011kqp.1_Missense_Mutation_p.P180S|TTC26_uc003vut.2_Missense_Mutation_p.P145S|TTC26_uc011kqq.1_Missense_Mutation_p.P154S	NM_024926	NP_079202	A0AVF1	TTC26_HUMAN	tetratricopeptide repeat domain 26 isoform 1	285							binding			ovary(1)	1						TGATGTCATTCCTGAAGCTAG	0.378													9	36					0	0	1	0	0
ADCK2	90956	broad.mit.edu	37	7	140373685	140373685	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:140373685C>T	uc003vvy.1	+	1	733	c.555C>T	c.(553-555)TTC>TTT	p.F185F	ADCK2_uc003vvz.2_Silent_p.F185F	NM_052853	NP_443085	Q7Z695	ADCK2_HUMAN	aarF domain containing kinase 2	185						integral to membrane	ATP binding|protein serine/threonine kinase activity				0	Melanoma(164;0.00956)					CTGAGCGCTTCCTTCGGCAGG	0.597													32	115					0	0	1	0	0
NDUFB2	4708	broad.mit.edu	37	7	140404690	140404690	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:140404690T>C	uc003vwa.2	+	3	338	c.274T>C	c.(274-276)TGG>CGG	p.W92R	NDUFB2_uc010lnl.2_RNA	NM_004546	NP_004537	O95178	NDUB2_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	92					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity			ovary(1)|central_nervous_system(1)	2	Melanoma(164;0.00956)				NADH(DB00157)	TCCTTCCCAGTGGACAGATGA	0.393													29	106					0	0	1	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453137	+	Missense_Mutation	DNP	AC	TT	TT	rs121913378		TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:140453136_140453137AC>TT	uc003vwc.3	-	15	1859_1860	c.1798_1799GT>AA	c.(1798-1800)GTG>AAG	p.V600K		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAGA	0.366	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)|V600M(IGR1_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				71	90					0	0	1	0	0
PRSS1	5644	broad.mit.edu	37	7	142457350	142457350	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:142457350G>A	uc003wak.2	+	1	32	c.15G>A	c.(13-15)CTG>CTA	p.L5L	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_RNA|PRSS1_uc011ksm.1_Silent_p.L5L|PRSS1_uc003wam.2_5'Flank	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	5					digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			ATCCACTCCTGATCCTTACCT	0.567									Hereditary_Pancreatitis				38	169					0	0	1	0	0
PRSS1	5644	broad.mit.edu	37	7	142459645	142459645	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:142459645G>A	uc003wak.2	+	3	238	c.221G>A	c.(220-222)GGA>GAA	p.G74E	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_3'UTR|PRSS1_uc003wam.2_Missense_Mutation_p.G14E	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	74	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			GTGAGACTGGGAGAGCACAAC	0.567									Hereditary_Pancreatitis				40	253					0	0	1	0	0
TRY6	154754	broad.mit.edu	37	7	142481834	142481834	+	Silent	SNP	T	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:142481834T>C	uc011ksq.1	+	4	596	c.513T>C	c.(511-513)TGT>TGC	p.C171C	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|uc003wan.1_Intron	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						AGGCTAAGTGTAAAGCCTCCT	0.512													11	211					0	0	1	0	0
CLCN1	1180	broad.mit.edu	37	7	143018857	143018857	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:143018857G>A	uc003wcr.1	+	5	699	c.612G>A	c.(610-612)AAG>AAA	p.K204K	CLCN1_uc011ktc.1_5'UTR|CLCN1_uc003wcs.1_RNA|CLCN1_uc010lox.1_RNA|CLCN1_uc010loy.1_Silent_p.K52K	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	204					muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					TTGTCCTGAAGGAATACCTCA	0.532													23	86					0	0	1	0	0
OR2A14	135941	broad.mit.edu	37	7	143826335	143826335	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:143826335A>T	uc011kua.1	+	1	130	c.130A>T	c.(130-132)ATC>TTC	p.I44F		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	44	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					GAATGGGGTCATCTTTGGGAT	0.498													74	274					0	0	1	0	0
ARHGEF5	7984	broad.mit.edu	37	7	144068336	144068336	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:144068336C>T	uc003wel.2	+	6	3732	c.3614C>T	c.(3613-3615)TCA>TTA	p.S1205L	ARHGEF5_uc003wek.2_Missense_Mutation_p.S1205L|ARHGEF5_uc003wem.2_Missense_Mutation_p.S60L	NM_005435	NP_005426	Q12774	ARHG5_HUMAN	rho guanine nucleotide exchange factor 5	1205	DH.				intracellular signal transduction|regulation of Rho protein signal transduction	intracellular	GTP binding|protein binding|Rho guanyl-nucleotide exchange factor activity			skin(2)	2	Melanoma(164;0.14)					CTTTCAACTTCACTCCGGGCC	0.507													16	155					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147092805	147092805	+	Missense_Mutation	SNP	G	A	A	rs76475298	by1000genomes	TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:147092805G>A	uc003weu.1	+	10	2119	c.1603G>A	c.(1603-1605)GAA>AAA	p.E535K		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	535	Extracellular (Potential).|Laminin G-like 2.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			AAATTTATACGAAGTGGCACA	0.438										HNSCC(39;0.1)			144	175					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147092819	147092819	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:147092819G>A	uc003weu.1	+	10	2133	c.1617G>A	c.(1615-1617)AGG>AGA	p.R539R		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	539	Extracellular (Potential).|Laminin G-like 2.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TGGCACAAAGGAAGCCGGGAA	0.433										HNSCC(39;0.1)			51	258					0	0	1	0	0
CUL1	8454	broad.mit.edu	37	7	148481127	148481127	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:148481127C>T	uc010lpg.2	+	11	1782	c.1256C>T	c.(1255-1257)CCT>CTT	p.P419L	CUL1_uc003wey.2_Missense_Mutation_p.P419L|CUL1_uc003wez.2_Missense_Mutation_p.P309L|CUL1_uc003wfa.2_Missense_Mutation_p.P80L	NM_003592	NP_003583	Q13616	CUL1_HUMAN	cullin 1	419					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell cycle arrest|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein ubiquitination|S phase of mitotic cell cycle|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytosol|nucleoplasm|SCF ubiquitin ligase complex	ubiquitin protein ligase binding			lung(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00291)			AGTAAATCCCCTGAGTTGCTG	0.423													21	93					0	0	1	0	0
ZNF786	136051	broad.mit.edu	37	7	148768537	148768537	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:148768537G>A	uc003wfh.2	-	4	1464	c.1327C>T	c.(1327-1329)CAC>TAC	p.H443Y	ZNF786_uc011kuk.1_Missense_Mutation_p.H406Y|ZNF786_uc003wfi.2_Missense_Mutation_p.H357Y	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	443	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			ACTCGAATGTGCTCCGTGAGT	0.632													13	35					0	0	1	0	0
GIMAP8	155038	broad.mit.edu	37	7	150171553	150171553	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:150171553G>A	uc003whj.2	+	4	1466	c.1136G>A	c.(1135-1137)AGA>AAA	p.R379K		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	379						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		ACGTTCTTAAGAAACAGCAAT	0.398													53	248					0	0	1	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439301	150439301	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:150439301C>T	uc003whr.1	+	3	426	c.74C>T	c.(73-75)CCA>CTA	p.P25L	GIMAP5_uc010lpu.2_5'UTR	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	25	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCTGCAACACCACCGGCATTG	0.453													26	116					0	0	1	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439439	150439439	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:150439439G>A	uc003whr.1	+	3	564	c.212G>A	c.(211-213)GGA>GAA	p.G71E	GIMAP5_uc010lpu.2_5'UTR	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	71	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GTGAAAACAGGAACATGGAAC	0.567													52	63					0	0	1	0	0
ABP1	26	broad.mit.edu	37	7	150554221	150554221	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr7:150554221G>A	uc003why.1	+	3	4881	c.663G>A	c.(661-663)GTG>GTA	p.V221V	ABP1_uc003whz.1_Silent_p.V221V|ABP1_uc003wia.1_Silent_p.V221V	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	221					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	AGCTCCTCGTGGATCATGGGA	0.607													19	90					0	0	1	0	0
MYOM2	9172	broad.mit.edu	37	8	2005561	2005561	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:2005561C>T	uc003wpx.3	+	4	497	c.359C>T	c.(358-360)TCC>TTC	p.S120F	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	120					muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		CTGGCACGCTCCCAGGCCCGC	0.617													13	24					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2830821	2830821	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:2830821C>T	uc011kwk.1	-	57	9134	c.8744G>A	c.(8743-8745)GGA>GAA	p.G2915E	CSMD1_uc011kwj.1_Missense_Mutation_p.G2244E|CSMD1_uc010lrg.2_Missense_Mutation_p.G925E	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2915	Sushi 21.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AGGATTATTTCCTATTGAAAA	0.413													66	203					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3216752	3216752	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:3216752G>A	uc011kwk.1	-	21	3619	c.3229C>T	c.(3229-3231)CGT>TGT	p.R1077C	CSMD1_uc011kwj.1_Missense_Mutation_p.R469C|CSMD1_uc003wqe.2_Missense_Mutation_p.R233C	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1077	Sushi 6.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CCTTCTAAACGATATCCCAGG	0.557													30	75					0	0	1	0	0
FAM167A	83648	broad.mit.edu	37	8	11301671	11301671	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:11301671G>A	uc010lry.1	-	2	870	c.250C>T	c.(250-252)CCC>TCC	p.P84S	FAM167A_uc003wtw.2_Missense_Mutation_p.P84S	NM_053279	NP_444509	Q96KS9	F167A_HUMAN	hypothetical protein LOC83648	84											0						TCTCTCAGGGGGAGCAAGGGC	0.687													14	61					0	0	1	0	0
BLK	640	broad.mit.edu	37	8	11407720	11407720	+	Missense_Mutation	SNP	C	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:11407720C>A	uc003wty.2	+	6	1002	c.421C>A	c.(421-423)CCA>ACA	p.P141T	BLK_uc003wtz.2_Missense_Mutation_p.P70T	NM_001715	NP_001706	P51451	BLK_HUMAN	B lymphoid tyrosine kinase	141	SH2.				intracellular protein kinase cascade|positive regulation of insulin secretion		ATP binding|non-membrane spanning protein tyrosine kinase activity			large_intestine(1)|stomach(1)|ovary(1)	3			STAD - Stomach adenocarcinoma(15;0.00391)	COAD - Colon adenocarcinoma(149;0.207)		GCTTCTTGCTCCAATCAACAA	0.552													20	65					1.96895e-08	1.98255e-08	1	1	0
WRN	7486	broad.mit.edu	37	8	30938609	30938609	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:30938609A>G	uc003xio.3	+	9	1854	c.1066A>G	c.(1066-1068)AAA>GAA	p.K356E	WRN_uc011lbd.1_Missense_Mutation_p.K59E|WRN_uc011lbe.1_5'Flank	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	356					base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		TCATTTAGCTAAACATGATGG	0.353			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				69	94					0	0	1	0	0
WRN	7486	broad.mit.edu	37	8	30941224	30941224	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:30941224C>T	uc003xio.3	+	10	2067	c.1279C>T	c.(1279-1281)CCC>TCC	p.P427S	WRN_uc011lbd.1_Intron|WRN_uc011lbe.1_5'UTR	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	427	1.|2 X 27 AA tandem repeats of H-L-S-P-N-D- N-E-N-D-T-S-Y-V-I-E-S-D-E-D-L-E-M-E-M-L- K.				base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		GCATTTATCTCCCAATGATAA	0.274			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				14	79					0	0	1	0	0
PXDNL	137902	broad.mit.edu	37	8	52321172	52321172	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:52321172G>A	uc003xqu.3	-	17	3113	c.3012C>T	c.(3010-3012)ATC>ATT	p.I1004I	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1004					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CCGCGCCCACGATCTTCCTGG	0.622													8	11					0	0	1	0	0
ST18	9705	broad.mit.edu	37	8	53044632	53044632	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:53044632G>A	uc003xqz.2	-	17	2708	c.2552C>T	c.(2551-2553)CCT>CTT	p.P851L	ST18_uc011ldq.1_Missense_Mutation_p.P498L|ST18_uc011ldr.1_Missense_Mutation_p.P816L|ST18_uc011lds.1_Missense_Mutation_p.P756L|ST18_uc003xra.2_Missense_Mutation_p.P851L	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	851						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				TCCATTGAGAGGATTCTCCTT	0.498													31	65					0	0	1	0	0
XKR4	114786	broad.mit.edu	37	8	56436024	56436024	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:56436024C>T	uc003xsf.2	+	3	1223	c.1191C>T	c.(1189-1191)TTC>TTT	p.F397F		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	397	Helical; (Potential).					integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			CCTCGGTTTTCCAGCTGTACT	0.512													67	179					0	0	1	0	0
CLVS1	157807	broad.mit.edu	37	8	62371076	62371076	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:62371076G>A	uc003xuh.2	+	5	1276	c.952G>A	c.(952-954)GAA>AAA	p.E318K	CLVS1_uc003xui.2_RNA|CLVS1_uc010lyp.2_Intron	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	318					lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						TCTGGAGAGAGAATGCTCACC	0.473													23	23					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73480417	73480417	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:73480417G>A	uc003xzb.2	+	2	1036	c.448G>A	c.(448-450)GAA>AAA	p.E150K		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	150	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			ACAAATGAACGAAGAACTGAG	0.453													45	161					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73848616	73848616	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:73848616G>A	uc003xzb.2	+	3	1614	c.1026G>A	c.(1024-1026)CTG>CTA	p.L342L		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	342	Helical; Name=Segment S5; (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			TATTGTTTCTGGCCATGGGGA	0.473													61	192					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77618548	77618548	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:77618548C>T	uc003yav.2	+	2	2612	c.2225C>T	c.(2224-2226)TCT>TTT	p.S742F	ZFHX4_uc003yat.1_Missense_Mutation_p.S742F|ZFHX4_uc003yau.1_Missense_Mutation_p.S742F|ZFHX4_uc003yaw.1_Missense_Mutation_p.S742F	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	742						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TTTGGCCACTCTGCCCCAGCC	0.517										HNSCC(33;0.089)			18	35					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77765601	77765601	+	Silent	SNP	T	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:77765601T>C	uc003yav.2	+	10	6696	c.6309T>C	c.(6307-6309)TTT>TTC	p.F2103F	ZFHX4_uc003yau.1_Silent_p.F2148F|ZFHX4_uc003yaw.1_Silent_p.F2103F	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2103	Homeobox 1.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GGGCTTATTTTGACATTAATA	0.398										HNSCC(33;0.089)			19	66					0	0	1	0	0
IL7	3574	broad.mit.edu	37	8	79710406	79710406	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:79710406G>A	uc003ybg.2	-	2	649	c.48C>T	c.(46-48)ATC>ATT	p.I16I	IL7_uc003ybe.2_5'UTR|IL7_uc011lfm.1_RNA|IL7_uc003ybh.2_RNA|IL7_uc003ybi.3_RNA	NM_000880	NP_000871	P13232	IL7_HUMAN	interleukin 7 precursor	16					bone resorption|cell-cell signaling|humoral immune response|organ morphogenesis|positive regulation of B cell proliferation|positive regulation of T cell differentiation	extracellular space	cytokine activity|growth factor activity|interleukin-7 receptor binding				0						ACAGAACAAGGATCAGGGGAG	0.358													34	53					0	0	1	0	0
CNGB3	54714	broad.mit.edu	37	8	87656025	87656025	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:87656025C>T	uc003ydx.2	-	10	1178	c.1132G>A	c.(1132-1134)GAA>AAA	p.E378K	CNGB3_uc010maj.2_Missense_Mutation_p.E240K	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	378	Helical; Name=H4; (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						CCAATTCCTTCATAGTTTGAA	0.358													42	126					0	0	1	0	0
RUNX1T1	862	broad.mit.edu	37	8	92972487	92972487	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:92972487C>T	uc003yfd.2	-	11	1882	c.1798G>A	c.(1798-1800)GAG>AAG	p.E600K	RUNX1T1_uc003yfc.1_Missense_Mutation_p.E573K|RUNX1T1_uc003yfe.1_Missense_Mutation_p.E563K|RUNX1T1_uc010mao.2_Missense_Mutation_p.E573K|RUNX1T1_uc011lgi.1_Missense_Mutation_p.E611K|uc010mam.2_5'Flank|RUNX1T1_uc010man.1_Missense_Mutation_p.E225K|RUNX1T1_uc003yfb.1_Missense_Mutation_p.E563K	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	600					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			GGGGTTGTCTCTATGGTGGAA	0.567													5	11					0	0	1	0	0
UBR5	51366	broad.mit.edu	37	8	103291146	103291146	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:103291146G>A	uc003ykr.1	-	44	6229	c.6196C>T	c.(6196-6198)CTT>TTT	p.L2066F	UBR5_uc003yks.1_Missense_Mutation_p.L2066F	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	2066					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			CGGCCAAAAAGATCCTCCTTT	0.363													79	211					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106815518	106815518	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:106815518G>A	uc003ymd.2	+	8	3231	c.3208G>A	c.(3208-3210)GAA>AAA	p.E1070K	ZFPM2_uc011lhs.1_Missense_Mutation_p.E801K	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	1070					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			TCCTCAGCACGAAGACGACCA	0.478													13	34					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113518989	113518989	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:113518989G>A	uc003ynu.2	-	29	4985	c.4826C>T	c.(4825-4827)CCG>CTG	p.P1609L	CSMD3_uc003yns.2_Missense_Mutation_p.P881L|CSMD3_uc003ynt.2_Missense_Mutation_p.P1569L|CSMD3_uc011lhx.1_Missense_Mutation_p.P1505L	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1609	Extracellular (Potential).|CUB 9.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TCTGCTATGCGGATATGGATG	0.383										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			49	77					0	0	1	0	0
TG	7038	broad.mit.edu	37	8	133925499	133925499	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:133925499G>T	uc003ytw.2	+	20	4408	c.4367G>T	c.(4366-4368)GGA>GTA	p.G1456V	TG_uc010mdw.2_Missense_Mutation_p.G215V	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1456	Type II.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		AGTCAGGACGGACTGGGATGC	0.572													20	38					8.00594e-06	8.02796e-06	1	1	0
FAM135B	51059	broad.mit.edu	37	8	139151309	139151309	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:139151309G>A	uc003yuy.2	-	18	3992	c.3821C>T	c.(3820-3822)TCC>TTC	p.S1274F	FAM135B_uc003yux.2_Missense_Mutation_p.S1175F|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1274										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TAGAGACCCGGATTTCTTCAG	0.353										HNSCC(54;0.14)			21	96					0	0	1	0	0
GPR20	2843	broad.mit.edu	37	8	142367842	142367842	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:142367842C>T	uc003ywf.2	-	2	271	c.182G>A	c.(181-183)GGA>GAA	p.G61E		NM_005293	NP_005284	Q99678	GPR20_HUMAN	G protein-coupled receptor 20	61	Helical; Name=1; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(97;4.32e-16)|all_epithelial(106;6.61e-14)|Lung NSC(106;9.4e-06)|all_lung(105;1.35e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0415)			GAAGATGGCTCCGTGCACCGC	0.657													17	45					0	0	1	0	0
SCRIB	23513	broad.mit.edu	37	8	144874420	144874420	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:144874420G>A	uc003yzp.1	-	32	4491	c.4484C>T	c.(4483-4485)GCC>GTC	p.A1495V	SCRIB_uc003yzn.1_Missense_Mutation_p.A228V|SCRIB_uc003yzo.1_Missense_Mutation_p.A1495V	NM_015356	NP_056171	Q14160	SCRIB_HUMAN	scribble isoform b	1495					activation of Rac GTPase activity|apoptosis involved in morphogenesis|cell migration|cell proliferation|cell-cell adhesion|establishment of apical/basal cell polarity|interspecies interaction between organisms|mammary gland duct morphogenesis|negative regulation of mitotic cell cycle|positive chemotaxis|positive regulation of apoptosis|positive regulation of receptor recycling|protein localization to adherens junction	cell-cell adherens junction|Scrib-APC-beta-catenin complex	protein binding			urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)|pancreas(1)	5	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;1.12e-34)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			ACGCTTCTCGGCCTCCAGGGC	0.731													4	11					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144943626	144943626	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:144943626C>T	uc003zaa.1	-	1	3809	c.3796G>A	c.(3796-3798)GTG>ATG	p.V1266M		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1266	Plectin 21.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCATCCCTCACGGCCTGGGCG	0.687													20	23					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144946003	144946003	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:144946003C>T	uc003zaa.1	-	1	1432	c.1419G>A	c.(1417-1419)CGG>CGA	p.R473R		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	473						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCTCCCCTCCCCGGGGTCCCC	0.692													12	21					0	0	1	0	0
OPLAH	26873	broad.mit.edu	37	8	145107471	145107471	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:145107471G>A	uc003zar.3	-	23	3266	c.3184C>T	c.(3184-3186)CCC>TCC	p.P1062S		NM_017570	NP_060040	O14841	OPLA_HUMAN	5-oxoprolinase (ATP-hydrolysing)	1062							5-oxoprolinase (ATP-hydrolyzing) activity|ATP binding				0	all_cancers(97;1.06e-10)|all_epithelial(106;1.5e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;2.24e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		L-Glutamic Acid(DB00142)	GAGCCTCGGGGAATGACCACG	0.726													4	7					0	0	1	0	0
AQP7	364	broad.mit.edu	37	9	33385019	33385019	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr9:33385019G>A	uc003zst.2	-	8	1185	c.1013C>T	c.(1012-1014)GCC>GTC	p.A338V	SUGT1P1_uc010mjq.1_Intron|AQP7_uc003zsu.1_3'UTR	NM_001170	NP_001161	O14520	AQP7_HUMAN	aquaporin 7	338	Cytoplasmic (Potential).				excretion|generation of precursor metabolites and energy	cell-cell junction|cytoplasm|integral to plasma membrane	glycerol channel activity|water channel activity				0			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.191)		GTGCTCTAGGGCCATGGATTC	0.552													73	131					0	0	1	0	0
PIGO	84720	broad.mit.edu	37	9	35092452	35092452	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr9:35092452G>A	uc003zwd.2	-	7	1828	c.1432C>T	c.(1432-1434)CCA>TCA	p.P478S	PIGO_uc003zwc.1_3'UTR|PIGO_uc003zwe.2_Intron|PIGO_uc003zwf.2_Intron|PIGO_uc003zwg.1_Missense_Mutation_p.P41S	NM_032634	NP_116023	Q8TEQ8	PIGO_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	478					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	transferase activity			large_intestine(1)|ovary(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			GGGCAGAATGGAAAGCCTGGG	0.567													42	70					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	43828154	43828154	+	RNA	SNP	T	C	C	rs140150445	by1000genomes	TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr9:43828154T>C	uc004acz.1	+	9		c.1642T>C								Homo sapiens cDNA FLJ30083 fis, clone BGGI12001097, weakly similar to Homo sapiens contactin associated protein (Caspr) mRNA.																		TGGTGGTGGATGATGACACAG	0.488													3	21					0	0	1	0	0
PIP5K1B	8395	broad.mit.edu	37	9	71606154	71606154	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr9:71606154C>T	uc004agu.2	+	15	1906	c.1601C>T	c.(1600-1602)TCT>TTT	p.S534F	PIP5K1B_uc011lrq.1_Intron|PIP5K1B_uc004agv.2_RNA	NM_003558	NP_003549	O14986	PI51B_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	534						endomembrane system|membrane|uropod	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|protein binding			stomach(1)	1				Lung(182;0.133)		GACAATGCTTCTGTGCTTGAC	0.443													25	31					0	0	1	0	0
OR13F1	138805	broad.mit.edu	37	9	107266729	107266729	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr9:107266729C>T	uc011lvm.1	+	1	186	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						TGTACCTCTTCCTCAGCAATC	0.478													63	86					0	0	1	0	0
OR13C8	138802	broad.mit.edu	37	9	107331595	107331595	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr9:107331595C>T	uc011lvo.1	+	1	147	c.147C>T	c.(145-147)ATC>ATT	p.I49I		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	49	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCTCAGTTATCATCTTTGATT	0.443													109	159					0	0	1	0	0
PALM2-AKAP2	445815	broad.mit.edu	37	9	112918598	112918598	+	Splice_Site	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr9:112918598G>A	uc004bej.3	+	9	3176	c.2996_splice	c.e9-1	p.G999_splice	PALM2-AKAP2_uc004bek.3_Splice_Site_p.G999_splice|AKAP2_uc011lwi.1_Splice_Site_p.G857_splice|AKAP2_uc004bem.2_Splice_Site_p.G857_splice|AKAP2_uc011lwj.1_Splice_Site_p.G768_splice|PALM2-AKAP2_uc004ben.2_Intron	NM_007203	NP_009134	Q9Y2D5	AKAP2_HUMAN	PALM2-AKAP2 protein isoform 1								enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						TGTTGTTTCAGGGAAAATAGA	0.493													36	48					0	0	1	0	0
PPP6C	5537	broad.mit.edu	37	9	127912080	127912080	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr9:127912080G>A	uc004bpg.3	-	7	1011	c.790C>T	c.(790-792)CGT>TGT	p.R264C	PPP6C_uc010mwv.2_Missense_Mutation_p.R301C|PPP6C_uc010mww.2_Missense_Mutation_p.R242C|PPP6C_uc011lzr.1_Missense_Mutation_p.R117C	NM_002721	NP_002712	O00743	PPP6_HUMAN	protein phosphatase 6, catalytic subunit isoform	264					G1/S transition of mitotic cell cycle|protein dephosphorylation	cytosol	metal ion binding|protein binding|protein serine/threonine phosphatase activity			ovary(1)|skin(1)	2						TTTCCACAACGATAGCAGTAA	0.403													21	32					0	0	1	0	0
KIAA0649	9858	broad.mit.edu	37	9	138376876	138376876	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr9:138376876C>T	uc004cfr.1	+	4	1069	c.520C>T	c.(520-522)CCG>TCG	p.P174S		NM_014811	NP_055626	Q5T8A7	K0649_HUMAN	1A6/DRIM (down-regulated in metastasis)	174						nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;6.91e-08)|Epithelial(140;4.69e-07)|all cancers(34;9.33e-06)		TAGATGTAAGCCGGAACCGGC	0.687													18	25					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3227866	3227866	+	Missense_Mutation	SNP	C	T	T	rs149129110		TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chrX:3227866C>T	uc004crg.3	-	7	8535	c.8378G>A	c.(8377-8379)GGA>GAA	p.G2793E		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2793	Ig-like C2-type 12.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GGTCAGTGATCCCTGGGGGTG	0.502													4	38					0	0	1	0	0
PCYT1B	9468	broad.mit.edu	37	X	24608226	24608226	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chrX:24608226C>T	uc004dbi.2	-	4	633	c.400G>A	c.(400-402)GAA>AAA	p.E134K	PCYT1B_uc004dbk.3_Missense_Mutation_p.E134K|PCYT1B_uc004dbj.2_Missense_Mutation_p.E116K	NM_004845	NP_004836	Q9Y5K3	PCY1B_HUMAN	choline phosphate cytidylyltransferase 1 beta	134	Catalytic (Potential).					endoplasmic reticulum	choline-phosphate cytidylyltransferase activity				0					Choline(DB00122)	CTGAGAGCTTCGTATCTCTCG	0.443													4	37					0	0	1	0	0
IL1RAPL1	11141	broad.mit.edu	37	X	28807516	28807516	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chrX:28807516T>A	uc004dby.2	+	2	564	c.56T>A	c.(55-57)TTG>TAG	p.L19*		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1	19	Ig-like C2-type 1.|Extracellular (Potential).				innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity			ovary(3)|lung(1)|pancreas(1)	5						ACTCAGAGTTTGAAGGTTGTG	0.383													28	23					0	0	1	0	0
DGKK	139189	broad.mit.edu	37	X	50122723	50122723	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chrX:50122723C>T	uc010njr.1	-	20	2824	c.2764G>A	c.(2764-2766)GAA>AAA	p.E922K		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	922					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					GAGATGGTTTCTCCATCACAC	0.458													22	19					0	0	1	0	0
ZNF711	7552	broad.mit.edu	37	X	84526599	84526599	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chrX:84526599G>A	uc004eeo.2	+	9	2398	c.2051G>A	c.(2050-2052)GGA>GAA	p.G684E	ZNF711_uc004eep.2_Missense_Mutation_p.G684E|ZNF711_uc004eeq.2_Missense_Mutation_p.G730E|ZNF711_uc011mqy.1_Missense_Mutation_p.G283E	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	684	C2H2-type 10.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						TGCAAGAGAGGATTCAGACAA	0.363													53	37					0	0	1	0	0
PCDH11X	27328	broad.mit.edu	37	X	91133636	91133636	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chrX:91133636G>A	uc004efk.1	+	2	3242	c.2397G>A	c.(2395-2397)GAG>GAA	p.E799E	PCDH11X_uc004efl.1_Silent_p.E799E|PCDH11X_uc004efo.1_Silent_p.E799E|PCDH11X_uc010nmv.1_Silent_p.E799E|PCDH11X_uc004efm.1_Silent_p.E799E|PCDH11X_uc004efn.1_Silent_p.E799E|PCDH11X_uc004efh.1_Silent_p.E799E|PCDH11X_uc004efj.1_Silent_p.E799E	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	799	Extracellular (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						CAAATACTGAGATAGCTGATG	0.443													60	36					0	0	1	0	0
DRP2	1821	broad.mit.edu	37	X	100505506	100505506	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chrX:100505506G>A	uc004egz.2	+	15	2004	c.1635G>A	c.(1633-1635)CTG>CTA	p.L545L	DRP2_uc011mrh.1_Silent_p.L467L	NM_001939	NP_001930	Q13474	DRP2_HUMAN	dystrophin related protein 2	545					central nervous system development	cytoplasm|cytoskeleton	zinc ion binding			ovary(2)	2						CCCGTCAGCTGGGTGAAGTGG	0.522													40	26					0	0	1	0	0
DCX	1641	broad.mit.edu	37	X	110644384	110644384	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chrX:110644384T>C	uc004epd.2	-	3	954	c.782A>G	c.(781-783)AAG>AGG	p.K261R	DCX_uc011msv.1_Missense_Mutation_p.K261R|DCX_uc004epe.2_Missense_Mutation_p.K180R|DCX_uc004epf.2_Missense_Mutation_p.K180R|DCX_uc004epg.2_Missense_Mutation_p.K180R	NM_000555	NP_000546	O43602	DCX_HUMAN	doublecortin isoform a	261	Doublecortin 2.				axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding			central_nervous_system(2)|lung(1)|skin(1)	4						GGTAACCAGCTTGGGGCGCAC	0.532													46	35					0	0	1	0	0
AGTR2	186	broad.mit.edu	37	X	115304477	115304477	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chrX:115304477C>T	uc004eqh.3	+	3	1151	c.944C>T	c.(943-945)CCG>CTG	p.P315L		NM_000686	NP_000677	P50052	AGTR2_HUMAN	angiotensin II receptor, type 2	315	Helical; Name=7; (Potential).				behavior|blood vessel remodeling|brain development|G-protein signaling, coupled to cGMP nucleotide second messenger|intracellular protein kinase cascade|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of heart rate|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of nitric-oxide synthase activity|positive regulation of phosphoprotein phosphatase activity|positive regulation of vasodilation|regulation of systemic arterial blood pressure by circulatory renin-angiotensin		angiotensin type II receptor activity|receptor antagonist activity			ovary(2)|lung(1)	3						TGCGTTAATCCGTTTCTGTAT	0.463													77	62					0	0	1	0	0
LONRF3	79836	broad.mit.edu	37	X	118147032	118147032	+	Silent	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chrX:118147032C>T	uc004eqw.2	+	9	1873	c.1842C>T	c.(1840-1842)ATC>ATT	p.I614I	LONRF3_uc004eqx.2_Silent_p.I573I|LONRF3_uc004eqy.2_RNA|LONRF3_uc004eqz.2_Silent_p.I358I	NM_001031855	NP_001027026	Q496Y0	LONF3_HUMAN	LON peptidase N-terminal domain and ring finger	614	Lon.				proteolysis		ATP-dependent peptidase activity|protein binding|zinc ion binding			breast(1)|central_nervous_system(1)	2						TCCTAGAGATCAGAAATGTTC	0.507													73	55					0	0	1	0	0
SEPT6	23157	broad.mit.edu	37	X	118786967	118786967	+	Silent	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chrX:118786967G>A	uc004erv.2	-	4	643	c.378C>T	c.(376-378)TTC>TTT	p.F126F	SEPT6_uc010nqk.2_RNA|SEPT6_uc004ers.2_Silent_p.F126F|SEPT6_uc004ert.2_Silent_p.F126F|SEPT6_uc004eru.2_Silent_p.F126F|SEPT6_uc004erw.2_Silent_p.F68F|SEPT6_uc011mtv.1_Silent_p.F68F|SEPT6_uc011mtw.1_Silent_p.F156F	NM_015129	NP_055944	Q14141	SEPT6_HUMAN	septin 6 isoform B	126					cell cycle|cytokinesis|interspecies interaction between organisms	cleavage furrow|condensed chromosome kinetochore|midbody|septin complex|spindle	GTP binding|protein binding			lung(1)|ovary(1)|prostate(1)|kidney(1)	4						GGTAGGCCTCGAATTGTGCAT	0.502													28	15					0	0	1	0	0
ARHGAP36	158763	broad.mit.edu	37	X	130218990	130218990	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chrX:130218990G>A	uc004evz.2	+	7	1252	c.907G>A	c.(907-909)GAT>AAT	p.D303N	ARHGAP36_uc004ewa.2_Missense_Mutation_p.D291N|ARHGAP36_uc004ewb.2_Missense_Mutation_p.D272N|ARHGAP36_uc004ewc.2_Missense_Mutation_p.D167N	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	303	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						TGACATGAAGGATTCTCTGCT	0.468													59	34					0	0	1	0	0
USP26	83844	broad.mit.edu	37	X	132160102	132160102	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chrX:132160102G>A	uc010nrm.1	-	6	2617	c.2147C>T	c.(2146-2148)CCT>CTT	p.P716L	USP26_uc011mvf.1_Missense_Mutation_p.P716L	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	716					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					ATCTTTAGTAGGATTGATAAT	0.348													34	29					0	0	1	0	0
VGLL1	51442	broad.mit.edu	37	X	135631080	135631080	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chrX:135631080G>A	uc004ezy.2	+	3	717	c.547G>A	c.(547-549)GAA>AAA	p.E183K	MIR934_hsa-mir-934|MI0005756_5'Flank	NM_016267	NP_057351	Q99990	VGLL1_HUMAN	vestigial like 1	183					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	transcription coactivator activity				0	Acute lymphoblastic leukemia(192;0.000127)					CCGTCCTCAGGAATCTGCCGC	0.597													63	43					0	0	1	0	0
NAA10	8260	broad.mit.edu	37	X	153197787	153197787	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chrX:153197787G>A	uc004fjm.1	-	5	434	c.323C>T	c.(322-324)TCC>TTC	p.S108F	NAA10_uc004fjn.1_Missense_Mutation_p.S108F|NAA10_uc011mzg.1_Missense_Mutation_p.S108F	NM_003491	NP_003482	P41227	NAA10_HUMAN	alpha-N-acetyltransferase 1A	108	N-acetyltransferase.				DNA packaging|internal protein amino acid acetylation|N-terminal protein amino acid acetylation	cytoplasm|nucleus	peptide alpha-N-acetyltransferase activity|protein binding			ovary(1)	1						GACATGCAGGGAGACATATTT	0.582													7	15					0	0	1	0	0
OPN1LW	5956	broad.mit.edu	37	X	153416195	153416195	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chrX:153416195G>A	uc004fjz.3	+	2	213	c.180G>A	c.(178-180)ATG>ATA	p.M60I		NM_020061	NP_064445	P04000	OPSR_HUMAN	opsin 1 (cone pigments), long-wave-sensitive	60	Helical; Name=1; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity				0	all_cancers(53;1.83e-16)|all_epithelial(53;2.73e-10)|all_lung(58;6.39e-07)|Lung NSC(58;8.37e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GTGTCTGGATGATCTTTGTGG	0.577													35	36					0	0	1	0	0
IL9R	3581	broad.mit.edu	37	X	155239662	155239662	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chrX:155239662G>A	uc004fnv.1	+	9	1333	c.1154G>A	c.(1153-1155)GGG>GAG	p.G385E	IL9R_uc004fnu.1_3'UTR	NM_002186	NP_002177	Q01113	IL9R_HUMAN	interleukin 9 receptor precursor	385	Cytoplasmic (Potential).				cell proliferation	extracellular space|integral to plasma membrane	interleukin-9 receptor activity				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					AGGCTCCCGGGGAACCTGAGC	0.652													10	53					0	0	1	0	0
PCDH11Y	83259	broad.mit.edu	37	Y	4967264	4967264	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chrY:4967264C>T	uc004fqo.2	+	2	2379	c.1645C>T	c.(1645-1647)CGT>TGT	p.R549C	PCDH11Y_uc010nwg.1_Missense_Mutation_p.R538C|PCDH11Y_uc004fql.1_Missense_Mutation_p.R538C|PCDH11Y_uc004fqm.1_Missense_Mutation_p.R538C|PCDH11Y_uc004fqn.1_Missense_Mutation_p.R549C|PCDH11Y_uc004fqp.1_Missense_Mutation_p.R320C	NM_032973	NP_116755	Q9BZA8	PC11Y_HUMAN	protocadherin 11 Y-linked isoform c	549	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						CAGCCTGGATCGTCGTACAGG	0.443													3	20					0	0	1	0	0
RBMY1B	378948	broad.mit.edu	37	Y	24052532	24052532	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chrY:24052532C>T	uc004fuw.3	-	8	972	c.854G>A	c.(853-855)CGG>CAG	p.R285Q	TTTY6_uc004fut.1_Intron|RBMY1A1_uc010nxc.1_Intron|RBMY1E_uc011nbg.1_Missense_Mutation_p.R285Q|RBMY1B_uc011nbf.1_Missense_Mutation_p.R250Q|RBMY1B_uc010nxd.2_Missense_Mutation_p.R285Q|RBMY1B_uc004fux.3_Missense_Mutation_p.R145Q	NM_001006121	NP_001006121	A6NDE4	RBY1B_HUMAN	RNA binding motif protein, Y-linked, family 1,	285	Arg-rich.				male gonad development|mRNA processing|RNA splicing|spermatogenesis	nucleus	nucleotide binding|protein binding|RNA binding				0						ACTTTCATCCCGACGAGAATG	0.284													62	253					0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	13417	13418	+	RNA	INS	-	GAGA	GAGA			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr1:13417_13418insGAGA	uc001aaa.3	+	3		c.660_661insGAGA			uc010nxq.1_Frame_Shift_Ins_p.P60fs|uc010nxr.1_RNA					Homo sapiens mRNA for DEAD/H box polypeptide 11 like 1 (DDX11L1 gene).																		TCCACCACCCCGAGATCACATT	0.559													8	36	---	---	---	---					
LOC100132247	100132247	broad.mit.edu	37	16	22545540	22545558	+	Frame_Shift_Del	DEL	CGAGCGTCTGCGGGGGCCG	-	-			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr16:22545540_22545558delCGAGCGTCTGCGGGGGCCG	uc010bxg.2	+	9	1418_1436	c.1236_1254delCGAGCGTCTGCGGGGGCCG	c.(1234-1254)GCCGAGCGTCTGCGGGGGCCGfs	p.A412fs	LOC100132247_uc010vbv.1_Frame_Shift_Del_p.A412fs|LOC100132247_uc010vbw.1_Frame_Shift_Del_p.A412fs|LOC100132247_uc010bxi.2_Frame_Shift_Del_p.A393fs|LOC100132247_uc010bxk.2_Frame_Shift_Del_p.A229fs	NM_001135865	NP_001129337	A8MRT5	K220L_HUMAN	hypothetical protein LOC100132247	412_418	Pro-rich.					integral to membrane					0						AGACACCTGCCGAGCGTCTGCGGGGGCCGCTTCCACCCT	0.562													5	9	---	---	---	---					
CDC27	996	broad.mit.edu	37	17	45219612	45219612	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr17:45219612delA	uc002ild.3	-	11	1488	c.1361delT	c.(1360-1362)CTAfs	p.L454fs	CDC27_uc002ile.3_Frame_Shift_Del_p.L460fs|CDC27_uc002ilf.3_Frame_Shift_Del_p.L454fs|CDC27_uc010wkp.1_Frame_Shift_Del_p.L393fs|CDC27_uc010wkq.1_Intron	NM_001256	NP_001247	P30260	CDC27_HUMAN	cell division cycle protein 27 isoform 2	454					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			lung(2)|breast(2)|ovary(1)	5						TGCTTTTTGTAGATTAAAGGC	0.308													9	65	---	---	---	---					
SLC8A2	6543	broad.mit.edu	37	19	47935681	47935683	+	In_Frame_Del	DEL	TCC	-	-			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr19:47935681_47935683delTCC	uc002pgx.2	-	9	2408_2410	c.2130_2132delGGA	c.(2128-2133)GAGGAC>GAC	p.E710del	SLC8A2_uc010xyq.1_In_Frame_Del_p.E466del|SLC8A2_uc010xyr.1_In_Frame_Del_p.E173del|SLC8A2_uc010ele.2_In_Frame_Del_p.E710del	NM_015063	NP_055878	Q9UPR5	NAC2_HUMAN	solute carrier family 8 member 2 precursor	710	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(1)	4		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)		OV - Ovarian serous cystadenocarcinoma(262;0.000501)|all cancers(93;0.00058)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0457)		CCGGGACCCGTCCTCCTCCTCCT	0.616													14	112	---	---	---	---					
CSMD3	114788	broad.mit.edu	37	8	113569025	113569025	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EB-A3XB-01A-11D-A23B-08	TCGA-EB-A3XB-10B-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1d1d007-672a-40da-9430-95814cf2b48b	9f4ffc2f-d006-4d86-b3b1-b25020481893	g.chr8:113569025delT	uc003ynu.2	-	25	4360	c.4201delA	c.(4201-4203)AGGfs	p.R1401fs	CSMD3_uc003yns.2_Frame_Shift_Del_p.R673fs|CSMD3_uc003ynt.2_Frame_Shift_Del_p.R1361fs|CSMD3_uc011lhx.1_Frame_Shift_Del_p.R1297fs	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1401	Extracellular (Potential).|Sushi 7.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TCCCATGCCCTTCTCTCCCCT	0.428										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			57	82	---	---	---	---					
