Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CCDC27	148870	broad.mit.edu	37	1	3683103	3683104	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:3683103_3683104CC>TT	uc001akv.2	+	9	1538_1539	c.1457_1458CC>TT	c.(1456-1458)TCC>TTT	p.S486F		NM_152492	NP_689705	Q2M243	CCD27_HUMAN	coiled-coil domain containing 27	486										skin(1)	1	all_cancers(77;0.0385)|Ovarian(185;0.0634)|Lung NSC(156;0.21)|all_lung(157;0.218)	all_epithelial(116;5.52e-17)|all_lung(118;1.04e-06)|Lung NSC(185;0.000214)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Lung SC(97;0.0367)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)		Epithelial(90;1.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.35e-22)|GBM - Glioblastoma multiforme(42;3.46e-16)|Colorectal(212;1.17e-05)|COAD - Colon adenocarcinoma(227;5.76e-05)|Kidney(185;0.00036)|BRCA - Breast invasive adenocarcinoma(365;0.000696)|KIRC - Kidney renal clear cell carcinoma(229;0.00558)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		TTCCAGTTCTCCAACCTCCGAG	0.347000													4	58					0	0	0.115264	0	0
C1orf187	374946	broad.mit.edu	37	1	11766511	11766511	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:11766511G>A	uc001asr.1	+	2	336	c.196G>A	c.(196-198)GAG>AAG	p.E66K		NM_198545	NP_940947	Q8NBI3	DRAXI_HUMAN	chromosome 1 open reading frame 187 precursor	66					axon guidance|commissural neuron differentiation in spinal cord|dorsal spinal cord development|forebrain development|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular region					0	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00826)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.48e-06)|COAD - Colon adenocarcinoma(227;0.000283)|BRCA - Breast invasive adenocarcinoma(304;0.000316)|Kidney(185;0.000841)|KIRC - Kidney renal clear cell carcinoma(229;0.00269)|STAD - Stomach adenocarcinoma(313;0.00754)|READ - Rectum adenocarcinoma(331;0.0651)		GGGCAAGAAGGAGTGGGGCCC	0.721000													3	30					0	0	0.115264	0	0
SPEN	23013	broad.mit.edu	37	1	16258504	16258504	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:16258504C>T	uc001axk.1	+	11	5973	c.5769C>T	c.(5767-5769)CCC>CCT	p.P1923P	SPEN_uc010obp.1_Silent_p.P1882P	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	1923					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		TCAAAGAGCCCGTTGAGCAAC	0.572000													9	131					0	0	0.307466	0	0
C1QA	712	broad.mit.edu	37	1	22965496	22965496	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:22965496C>T	uc001bfy.2	+	3	419	c.334C>T	c.(334-336)CAG>TAG	p.Q112*	C1QA_uc001bfz.2_Nonsense_Mutation_p.Q112*	NM_015991	NP_057075	P02745	C1QA_HUMAN	complement component 1, q subcomponent, A chain	112	C1q.				cell-cell signaling|complement activation, classical pathway|innate immune response	collagen|complement component C1 complex					0		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.41e-27)|Colorectal(126;1.52e-07)|COAD - Colon adenocarcinoma(152;1.12e-05)|GBM - Glioblastoma multiforme(114;1.63e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000541)|KIRC - Kidney renal clear cell carcinoma(1967;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.197)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CATCAAGGACCAGCCGAGGCC	0.652000													6	34					0	0	0.217242	0	0
C1QB	713	broad.mit.edu	37	1	22987431	22987431	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:22987431G>A	uc001bgd.2	+	3	446	c.314G>A	c.(313-315)GGA>GAA	p.G105E		NM_000491	NP_000482	P02746	C1QB_HUMAN	complement component 1, q subcomponent, B chain	105	Collagen-like 2.				complement activation, classical pathway|innate immune response	collagen|complement component C1 complex				breast(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.06e-27)|Colorectal(126;1.58e-07)|GBM - Glioblastoma multiforme(114;6.72e-06)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000551)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GGGGCCCCTGGAGCCCCAGGC	0.632000													8	115					0	0	0.307466	0	0
IL28RA	163702	broad.mit.edu	37	1	24495953	24495953	+	Silent	SNP	G	A	A	rs141902174		TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:24495953G>A	uc001bis.2	-	3	334	c.321C>T	c.(319-321)TCC>TCT	p.S107S	IL28RA_uc001bir.2_Silent_p.S107S|IL28RA_uc001bit.2_Silent_p.S107S|IL28RA_uc001biu.2_Silent_p.S23S|IL28RA_uc001biv.2_Silent_p.S107S	NM_170743	NP_734464	Q8IU57	I28RA_HUMAN	interleukin 28 receptor, alpha isoform 1	107	Extracellular (Potential).|Fibronectin type-III.				cytokine-mediated signaling pathway|negative regulation of cell proliferation|regulation of defense response to virus by host	interleukin-28 receptor complex	protein binding|receptor activity				0		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.00117)|all_lung(284;0.00151)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;3.21e-24)|Colorectal(126;6.61e-08)|COAD - Colon adenocarcinoma(152;3.56e-06)|GBM - Glioblastoma multiforme(114;0.000132)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00918)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.0853)|LUSC - Lung squamous cell carcinoma(448;0.185)		AGGGGGACTTGGAGCTGGGAG	0.547000													8	88					0	0	0.278610	0	0
C1orf63	57035	broad.mit.edu	37	1	25572954	25572954	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:25572954G>A	uc001bjw.2	-	2	753	c.501C>T	c.(499-501)CCC>CCT	p.P167P		NM_020317	NP_064713	Q9BUV0	CA063_HUMAN	hypothetical protein LOC57035	167	Arg-rich.									pancreas(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;7.9e-27)|Colorectal(126;8.83e-09)|COAD - Colon adenocarcinoma(152;6.43e-07)|STAD - Stomach adenocarcinoma(196;0.000333)|BRCA - Breast invasive adenocarcinoma(304;0.000443)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|GBM - Glioblastoma multiforme(114;0.000932)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		TTAAGCGAAAGGGGGTTCTGC	0.547000													14	194					0	0	0.479597	0	0
CSMD2	114784	broad.mit.edu	37	1	34090712	34090712	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:34090712G>A	uc001bxn.1	-	34	5348	c.5319C>T	c.(5317-5319)ATC>ATT	p.I1773I	CSMD2_uc001bxm.1_Silent_p.I1813I|CSMD2_uc001bxo.1_Silent_p.I686I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1773	Sushi 10.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GGAGGCACTCGATCTCTGGCG	0.657000													8	110					0	0	0.278610	0	0
THRAP3	9967	broad.mit.edu	37	1	36755340	36755340	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:36755340G>A	uc001cae.3	+	5	1944	c.1720G>A	c.(1720-1722)GAC>AAC	p.D574N	THRAP3_uc001caf.3_Missense_Mutation_p.D574N|THRAP3_uc001cag.1_Missense_Mutation_p.D574N	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	574					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TGTCCGGATGGACTCTTTTGA	0.527000			T	USP6	aneurysmal bone cysts								11	108					0	0	0.411799	0	0
MPL	4352	broad.mit.edu	37	1	43806136	43806136	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:43806136C>T	uc001ciw.2	+	6	977	c.932C>T	c.(931-933)TCC>TTC	p.S311F	MPL_uc001civ.2_Missense_Mutation_p.S311F|MPL_uc009vwr.2_Missense_Mutation_p.S304F	NM_005373	NP_005364	P40238	TPOR_HUMAN	myeloproliferative leukemia virus oncogene	311	Extracellular (Potential).				cell proliferation|platelet activation	integral to plasma membrane	cytokine receptor activity			haematopoietic_and_lymphoid_tissue(361)|upper_aerodigestive_tract(1)|pancreas(1)	363	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CATGCTAGCTCCCAAGGCTTC	0.517000			Mis		MPD	MPD	congenital amegakaryocytic thrombocytopenia						35	269					0	0	0.760397	0	0
AKR1A1	10327	broad.mit.edu	37	1	46033816	46033816	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:46033816C>T	uc001cod.2	+	6	983	c.519C>T	c.(517-519)CTC>CTT	p.L173L	AKR1A1_uc001coe.2_Silent_p.L173L|AKR1A1_uc001cof.2_Missense_Mutation_p.S46L|AKR1A1_uc001cog.2_RNA	NM_006066	NP_006057	P14550	AK1A1_HUMAN	aldo-keto reductase family 1, member A1	173					glucose metabolic process		alditol:NADP+ 1-oxidoreductase activity|electron carrier activity|protein binding				0	Acute lymphoblastic leukemia(166;0.155)					ATGACATACTCAGTGTGGCCT	0.567000													5	38					0	0	0.184627	0	0
ODF2L	57489	broad.mit.edu	37	1	86822195	86822196	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:86822195_86822196CC>GT	uc001dll.1	-	14	1789_1790	c.1449_1450GG>AC	c.(1447-1452)CAGGAG>CAACAG	p.E484Q	ODF2L_uc001dlm.1_Missense_Mutation_p.E455Q|ODF2L_uc001dln.2_Missense_Mutation_p.E455Q|ODF2L_uc001dlo.2_Missense_Mutation_p.E324Q|ODF2L_uc001dlp.2_Intron|ODF2L_uc010osg.1_Intron	NM_020729	NP_065780	Q9ULJ1	ODF2L_HUMAN	outer dense fiber of sperm tails 2-like isoform	484	Potential.					centrosome				ovary(1)	1				all cancers(265;0.0313)|Epithelial(280;0.0611)		TGCAGACTCTCCTGACACTCGT	0.559000													13	102					0	0	0.115264	0	0
LRRC8C	84230	broad.mit.edu	37	1	90178512	90178512	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:90178512C>T	uc001dnl.3	+	3	625	c.383C>T	c.(382-384)CCT>CTT	p.P128L		NM_032270	NP_115646	Q8TDW0	LRC8C_HUMAN	leucine rich repeat containing 8 family, member	128	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8		all_lung(203;0.126)		all cancers(265;0.00756)|Epithelial(280;0.0313)		AAGTATTTCCCTTACCTTGTC	0.428000													12	142					0	0	0.411799	0	0
SPAG17	200162	broad.mit.edu	37	1	118550670	118550670	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:118550670G>A	uc001ehk.2	-	31	4652	c.4584C>T	c.(4582-4584)TAC>TAT	p.Y1528Y		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1528						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		GACCTACCTGGTATGTTCCCT	0.478000													9	92					0	0	0.335167	0	0
GJA8	2703	broad.mit.edu	37	1	147380904	147380904	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:147380904C>T	uc001epu.1	+	2	885	c.822C>T	c.(820-822)ATC>ATT	p.I274I		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	274	Cytoplasmic (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					AAGAGAAAATCGTTTCCCACT	0.537000													10	92					0	0	0.387290	0	0
Unknown	0	broad.mit.edu	37	1	148882032	148882032	+	RNA	SNP	A	G	G			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:148882032A>G	uc009wkv.1	+	3		c.253A>G								Homo sapiens cDNA, FLJ17483.																		TAGCAGTGACAAATTCACTTT	0.348000													5	68					0	0	0.184627	0	0
SV2A	9900	broad.mit.edu	37	1	149878254	149878254	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:149878254C>T	uc001etg.2	-	11	2324	c.1833G>A	c.(1831-1833)GGG>GGA	p.G611G	SV2A_uc009wlk.2_Silent_p.G63G|SV2A_uc001eth.2_Silent_p.G611G	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	611	Helical; (Potential).			G -> R (in Ref. 3; BAC11645).	neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	ACACGATATTCCCAGGAAGCA	0.577000													13	102					0	0	0.435327	0	0
TARS2	80222	broad.mit.edu	37	1	150471474	150471474	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:150471474C>T	uc001euq.2	+	12	1510	c.1503C>T	c.(1501-1503)TTC>TTT	p.F501F	TARS2_uc010pcd.1_RNA|TARS2_uc001eur.2_Silent_p.F419F|TARS2_uc009wlt.2_Silent_p.F127F|TARS2_uc009wls.2_Silent_p.F371F	NM_025150	NP_079426	Q9BW92	SYTM_HUMAN	threonyl-tRNA synthetase 2, mitochondrial	501					threonyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|threonine-tRNA ligase activity			ovary(1)	1	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.51e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)		L-Threonine(DB00156)	CATCTGGCTTCCTGGGGGACC	0.552000													14	158					0	0	0.479597	0	0
HRNR	388697	broad.mit.edu	37	1	152191731	152191731	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:152191731C>T	uc001ezt.1	-	3	2450	c.2374G>A	c.(2374-2376)GGC>AGC	p.G792S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	792	8.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCGTGTTGGCCGTGGCTGGAG	0.602000													11	129					0	0	0.361761	0	0
FLG	2312	broad.mit.edu	37	1	152279951	152279951	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:152279951C>T	uc001ezu.1	-	3	7447	c.7411G>A	c.(7411-7413)GGA>AGA	p.G2471R		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2471	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGCCTTCCTCCACTGCTTGAC	0.567000									Ichthyosis				113	791					0	0	0.870114	0	0
FLG	2312	broad.mit.edu	37	1	152281894	152281894	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:152281894C>T	uc001ezu.1	-	3	5504	c.5468G>A	c.(5467-5469)GGA>GAA	p.G1823E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1823	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCCTGCCTTCCTCCTCTGCT	0.582000									Ichthyosis				29	869					0	0	0.729181	0	0
FLG2	388698	broad.mit.edu	37	1	152327549	152327549	+	Missense_Mutation	SNP	C	T	T	rs148753254		TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:152327549C>T	uc001ezw.3	-	3	2786	c.2713G>A	c.(2713-2715)GGA>AGA	p.G905R	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	905	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAGTATTGTCCTGAGCCAGTC	0.488000													38	384					0	0	0.788014	0	0
SHC1	6464	broad.mit.edu	37	1	154938691	154938691	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:154938691A>G	uc001ffv.2	-	9	1420	c.1199T>C	c.(1198-1200)GTT>GCT	p.V400A	SHC1_uc001ffu.2_5'Flank|SHC1_uc001ffz.1_Missense_Mutation_p.V171A|SHC1_uc001ffw.2_Missense_Mutation_p.V400A|SHC1_uc001ffx.2_Missense_Mutation_p.V290A|SHC1_uc001ffy.2_Missense_Mutation_p.V290A	NM_183001	NP_892113	P29353	SHC1_HUMAN	SHC-transforming protein 1 isoform 1	400	CH1.				activation of MAPK activity|blood coagulation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|positive regulation of DNA replication|Ras protein signal transduction|regulation of epidermal growth factor receptor activity|regulation of growth	cytosol|mitochondrial matrix|Shc-EGFR complex	epidermal growth factor receptor binding|insulin receptor binding|insulin-like growth factor receptor binding|phospholipid binding|protein binding|transmembrane receptor protein tyrosine kinase adaptor activity			lung(1)|skin(1)	2	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			ATCTCCCCCAACAGGCTGTCC	0.582000													4	38					0	0	0.150653	0	0
CLK2	1196	broad.mit.edu	37	1	155233803	155233803	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:155233803G>A	uc001fjy.2	-	12	1545	c.1255C>T	c.(1255-1257)CTG>TTG	p.L419L	RAG1AP1_uc010pey.1_Intron|SCAMP3_uc001fjs.2_5'Flank|SCAMP3_uc001fju.2_5'Flank|SCAMP3_uc001fjv.2_5'Flank|SCAMP3_uc001fjt.2_5'Flank|CLK2_uc001fjw.2_Silent_p.L418L|CLK2_uc001fjx.2_Silent_p.L191L|CLK2_uc009wqm.2_Silent_p.L419L	NM_003993	NP_003984	P49760	CLK2_HUMAN	CDC-like kinase 2	419	Protein kinase.					nucleus	ATP binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			TCCCAATCCAGGCGACCCCGG	0.517000								Other_conserved_DNA_damage_response_genes					18	183					0	0	0.539581	0	0
LMNA	4000	broad.mit.edu	37	1	156105792	156105793	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:156105792_156105793CC>TT	uc001fni.2	+	6	1286_1287	c.1037_1038CC>TT	c.(1036-1038)GCC>GTT	p.A346V	LMNA_uc001fnf.1_Missense_Mutation_p.A346V|LMNA_uc001fng.2_Missense_Mutation_p.A346V|LMNA_uc001fnh.2_Missense_Mutation_p.A346V|LMNA_uc009wro.1_Missense_Mutation_p.A346V|LMNA_uc010pgz.1_Missense_Mutation_p.A234V|LMNA_uc001fnj.2_Missense_Mutation_p.A265V|LMNA_uc001fnk.2_Missense_Mutation_p.A247V|LMNA_uc009wrp.2_Missense_Mutation_p.P74L|LMNA_uc010pha.1_Missense_Mutation_p.A2V	NM_170707	NP_733821	P02545	LMNA_HUMAN	lamin A/C isoform 1 precursor	346	Coil 2.|Rod.				cellular component disassembly involved in apoptosis|cellular response to hypoxia|establishment or maintenance of microtubule cytoskeleton polarity|muscle organ development|positive regulation of cell aging|regulation of apoptosis|regulation of cell migration	cytoplasm|lamin filament|nuclear envelope|nuclear envelope|perinuclear region of cytoplasm	protein binding|structural molecule activity|structural molecule activity			ovary(2)	2	Hepatocellular(266;0.158)					CGGGAGATGGCCGAGATGCGGG	0.644000									Werner_syndrome|Hutchinson-Gilford_Progeria_Syndrome				7	67					0	0	0.115264	0	0
MIR765	768220	broad.mit.edu	37	1	156906023	156906023	+	RNA	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:156906023C>T	hsa-mir-765|MI0005116	-			c.14C>T			ARHGEF11_uc010phu.1_Intron|ARHGEF11_uc001fqn.2_Intron|ARHGEF11_uc001fqo.2_Intron																	0						ACTCCACTTTCATCAGCGCCT	0.502000													4	61					0	0	0.150653	0	0
OR10K2	391107	broad.mit.edu	37	1	158389833	158389833	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:158389833G>A	uc010pii.1	-	1	824	c.824C>T	c.(823-825)TCA>TTA	p.S275L		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	275	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					GTAGGATACTGATATTAGAGC	0.383000													21	90					0	0	0.654019	0	0
MNDA	4332	broad.mit.edu	37	1	158815707	158815707	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:158815707G>A	uc001fsz.1	+	5	1101	c.901G>A	c.(901-903)GAA>AAA	p.E301K		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	301	HIN-200.				B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					CAGAATTATCGAAATAGCAAA	0.338000													7	66					0	0	0.248553	0	0
B4GALT3	8703	broad.mit.edu	37	1	161145865	161145865	+	Splice_Site	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:161145865C>T	uc001fyq.1	-	3	249	c.-13_splice	c.e3-1		PPOX_uc010pkh.1_Intron|PPOX_uc001fyi.2_Intron|B4GALT3_uc001fyo.1_5'Flank|B4GALT3_uc001fyp.1_5'Flank|B4GALT3_uc001fyr.1_5'UTR|B4GALT3_uc001fys.1_5'UTR|B4GALT3_uc009wud.1_5'UTR	NM_003779	NP_003770	O60512	B4GT3_HUMAN	UDP-Gal:betaGlcNAc beta 1,4-						post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity|metal ion binding|N-acetyllactosamine synthase activity				0	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)		N-Acetyl-D-glucosamine(DB00141)	GGGGTGAGATCTAGGGAGGGA	0.602000													10	79					0	0	0.361761	0	0
C1orf192	257177	broad.mit.edu	37	1	161334778	161334778	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:161334778G>C	uc001gal.2	-	5	517	c.511C>G	c.(511-513)CCC>GCC	p.P171A		NM_001013625	NP_001013647	Q5VTH2	CA192_HUMAN	hypothetical protein LOC257177	171											0	all_cancers(52;4.64e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			GGTCTTTGGGGACCTGGAGTA	0.527000													15	126					0	0	0.520397	0	0
F5	2153	broad.mit.edu	37	1	169513601	169513601	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:169513601C>T	uc001ggg.1	-	12	2053	c.1908G>A	c.(1906-1908)AGG>AGA	p.R636R		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	636	Plastocyanin-like 4.|F5/8 type A 2.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TGTCCTCATGCCTCTTTCCAT	0.493000													12	73					0	0	0.387290	0	0
TNR	7143	broad.mit.edu	37	1	175348711	175348711	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:175348711G>A	uc001gkp.1	-	7	2021	c.1940C>T	c.(1939-1941)CCA>CTA	p.P647L	TNR_uc009wwu.1_Missense_Mutation_p.P647L	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	647	Fibronectin type-III 4.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CCTGGTGGTTGGACCAATGCC	0.537000													8	97					0	0	0.278610	0	0
CFH	3075	broad.mit.edu	37	1	196695652	196695652	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:196695652G>A	uc001gtj.3	+	13	2166	c.1926G>A	c.(1924-1926)AAG>AAA	p.K642K		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	642	Sushi 11.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						GGAATGTTAAGGAAAAAACGA	0.338000													5	33					0	0	0.184627	0	0
FAM58B	339521	broad.mit.edu	37	1	200183057	200183057	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:200183057G>A	uc009wzi.1	+	1	402	c.366G>A	c.(364-366)CGG>CGA	p.R122R		NM_001105517	NP_001098987	P0C7Q3	FA58B_HUMAN	family with sequence similarity 58 member B	122					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	Prostate(682;0.19)					GGGAGCTCCGGGACAGCATTG	0.572000													11	133					0	0	0.387290	0	0
FAM58B	339521	broad.mit.edu	37	1	200183367	200183367	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:200183367A>T	uc009wzi.1	+	1	712	c.676A>T	c.(676-678)AGT>TGT	p.S226C		NM_001105517	NP_001098987	P0C7Q3	FA58B_HUMAN	family with sequence similarity 58 member B	226					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	Prostate(682;0.19)					GCAGGCGTTTAGTGACGACCT	0.547000													6	104					0	0	0.361761	0	0
ZNF281	23528	broad.mit.edu	37	1	200376666	200376666	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:200376666G>A	uc001gve.2	-	2	2275	c.2168C>T	c.(2167-2169)TCT>TTT	p.S723F	ZNF281_uc001gvf.1_Missense_Mutation_p.S723F|ZNF281_uc001gvg.1_Missense_Mutation_p.S687F	NM_012482	NP_036614	Q9Y2X9	ZN281_HUMAN	zinc finger protein 281	723					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|breast(1)	2						TGAGGTAACAGATTGGCCGAA	0.428000													7	125					0	0	0.278610	0	0
FMOD	2331	broad.mit.edu	37	1	203317042	203317042	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:203317042G>A	uc001gzr.2	-	2	493	c.357C>T	c.(355-357)TCC>TCT	p.S119S	FMOD_uc010pqi.1_RNA	NM_002023	NP_002014	Q06828	FMOD_HUMAN	fibromodulin precursor	119	LRR 1.				transforming growth factor beta receptor complex assembly	extracellular space|proteinaceous extracellular matrix				ovary(2)|breast(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.171)			CTTCCTGGATGGAGGTGATCT	0.542000													5	54					0	0	0.184627	0	0
C4BPA	722	broad.mit.edu	37	1	207307800	207307800	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:207307800G>A	uc001hfo.2	+	9	1330	c.1136G>A	c.(1135-1137)AGG>AAG	p.R379K		NM_000715	NP_000706	P04003	C4BPA_HUMAN	complement component 4 binding protein, alpha	379	Sushi 6.				complement activation, classical pathway|innate immune response	extracellular region	protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						ACTCAACACAGGAAAAGTCGT	0.383000													22	146					0	0	0.608945	0	0
LAMB3	3914	broad.mit.edu	37	1	209800877	209800877	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:209800877C>T	uc001hhg.2	-	11	1726	c.1336G>A	c.(1336-1338)GAG>AAG	p.E446K	LAMB3_uc009xco.2_Missense_Mutation_p.E446K|LAMB3_uc001hhh.2_Missense_Mutation_p.E446K|LAMB3_uc010psl.1_RNA	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	446	Laminin EGF-like 4.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		CCACTCTCCTCGTCACACGGC	0.617000											OREG0014217	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	115					0	0	0.278610	0	0
USH2A	7399	broad.mit.edu	37	1	215844390	215844390	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:215844390G>A	uc001hku.1	-	64	14444	c.14057C>T	c.(14056-14058)CCA>CTA	p.P4686L		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4686	Fibronectin type-III 32.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GATTAGGACTGGATTGGATTT	0.363000										HNSCC(13;0.011)			12	176					0	0	0.411799	0	0
USH2A	7399	broad.mit.edu	37	1	216270537	216270537	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:216270537C>T	uc001hku.1	-	22	5033	c.4646G>A	c.(4645-4647)CGA>CAA	p.R1549Q		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1549	Laminin G-like 1.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CACTTTTGTTCGAAAGCTGGC	0.388000										HNSCC(13;0.011)			8	60					0	0	0.278610	0	0
ESRRG	2104	broad.mit.edu	37	1	216824393	216824393	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:216824393C>T	uc001hkw.1	-	3	677	c.511G>A	c.(511-513)GAA>AAA	p.E171K	ESRRG_uc001hky.1_Missense_Mutation_p.E148K|ESRRG_uc009xdp.1_Missense_Mutation_p.E148K|ESRRG_uc001hkz.1_Intron|ESRRG_uc010puc.1_Missense_Mutation_p.E148K|ESRRG_uc001hla.1_Missense_Mutation_p.E148K|ESRRG_uc001hlb.1_Missense_Mutation_p.E148K|ESRRG_uc010pud.1_5'UTR|ESRRG_uc001hlc.1_Missense_Mutation_p.E148K|ESRRG_uc001hld.1_Missense_Mutation_p.E148K|ESRRG_uc001hkx.1_Missense_Mutation_p.E176K|ESRRG_uc009xdo.1_Missense_Mutation_p.E148K|ESRRG_uc001hle.1_Missense_Mutation_p.E148K	NM_001438	NP_001429	P62508	ERR3_HUMAN	estrogen-related receptor gamma isoform 1	171	Nuclear receptor.|NR C4-type.				positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	AF-2 domain binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|kidney(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0358)|all cancers(67;0.0693)|GBM - Glioblastoma multiforme(131;0.0713)	Diethylstilbestrol(DB00255)	TTTGTGATTTCACATTCATTC	0.433000													9	133					0	0	0.335167	0	0
SUSD4	55061	broad.mit.edu	37	1	223402632	223402632	+	Missense_Mutation	SNP	C	T	T	rs141716617	by1000genomes	TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:223402632C>T	uc001hnx.2	-	5	1457	c.823G>A	c.(823-825)GAT>AAT	p.D275N	SUSD4_uc001hny.3_Missense_Mutation_p.D275N|SUSD4_uc010puw.1_Missense_Mutation_p.D115N	NM_017982	NP_060452	Q5VX71	SUSD4_HUMAN	sushi domain containing 4 isoform a	275	Sushi 4.|Extracellular (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(131;0.0611)		TAGCCAGGATCGCAGTAAAAC	0.517000													12	112					0	0	0.411799	0	0
RAB4A	5867	broad.mit.edu	37	1	229433301	229433301	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:229433301C>T	uc001hth.2	+	5	571	c.363C>T	c.(361-363)ATC>ATT	p.I121I	RAB4A_uc001hti.2_RNA|RAB4A_uc001htj.2_RNA	NM_004578	NP_004569	P20338	RAB4A_HUMAN	RAB4A, member RAS oncogene family	116							GDP binding|GTP binding|GTPase activity			ovary(1)	1	Breast(184;0.0858)|Ovarian(103;0.103)	Prostate(94;0.178)				ACATTGTGATCATCCTTTGTG	0.413000													17	152					0	0	0.539581	0	0
RYR2	6262	broad.mit.edu	37	1	237947660	237947660	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:237947660G>A	uc001hyl.1	+	90	12768	c.12648G>A	c.(12646-12648)GCG>GCA	p.A4216A	RYR2_uc010pya.1_Silent_p.A631A	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4216					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AGAGGTCAGCGAATAAGGAAG	0.542000													5	110					0	0	0.217242	0	0
OR2W3	343171	broad.mit.edu	37	1	248058984	248058984	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:248058984G>A	uc001idp.1	+	3	365	c.96G>A	c.(94-96)CTG>CTA	p.L32L	OR2W3_uc010pzb.1_Silent_p.L32L	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	32	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			TGGTCATCCTGATCGCGTACC	0.572000													27	160					0	0	0.681144	0	0
OR2M2	391194	broad.mit.edu	37	1	248343781	248343781	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:248343781C>T	uc010pzf.1	+	1	494	c.494C>T	c.(493-495)TCC>TTC	p.S165F		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	165	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			GCCACATTTTCCTTCTCCTTT	0.423000													40	372					0	0	0.840704	0	0
OR2T1	26696	broad.mit.edu	37	1	248569658	248569658	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:248569658G>A	uc010pzm.1	+	1	363	c.363G>A	c.(361-363)ATG>ATA	p.M121I		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	121	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TAATTGACATGATGTATATTT	0.453000													9	223					0	0	0.307466	0	0
OR2T34	127068	broad.mit.edu	37	1	248737528	248737528	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:248737528C>T	uc001iep.1	-	1	531	c.531G>A	c.(529-531)AGG>AGA	p.R177R		NM_001001821	NP_001001821	Q8NGX1	O2T34_HUMAN	olfactory receptor, family 2, subfamily T,	177	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCAGGATTTTCCTAGACTGGC	0.527000													13	143					0	0	0.435327	0	0
OR2T10	127069	broad.mit.edu	37	1	248756679	248756679	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr1:248756679G>A	uc010pzn.1	-	1	391	c.391C>T	c.(391-393)CGT>TGT	p.R131C		NM_001004693	NP_001004693	Q8NGZ9	O2T10_HUMAN	olfactory receptor, family 2, subfamily T,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ACAGAGTAACGGAGAGGATGG	0.562000													6	85					0	0	0.217242	0	0
KIAA1217	56243	broad.mit.edu	37	10	24762237	24762237	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr10:24762237G>A	uc001iru.3	+	6	1330	c.927G>A	c.(925-927)GCG>GCA	p.A309A	KIAA1217_uc001irs.2_Silent_p.A229A|KIAA1217_uc001irt.3_Silent_p.A309A|KIAA1217_uc010qcy.1_Silent_p.A309A|KIAA1217_uc010qcz.1_Silent_p.A309A|KIAA1217_uc001irv.1_Silent_p.A159A|KIAA1217_uc010qda.1_RNA|KIAA1217_uc001irw.2_Silent_p.A27A|KIAA1217_uc001irz.2_Silent_p.A27A|KIAA1217_uc001irx.2_Silent_p.A27A|KIAA1217_uc001iry.2_Silent_p.A27A	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	309	Pro-rich.				embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						CACCCCATGCGATTCCAAATT	0.567000													18	149					0	0	0.557998	0	0
C10orf50	645528	broad.mit.edu	37	10	26880320	26880320	+	RNA	SNP	A	G	G			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr10:26880320A>G	uc001ist.2	+	2		c.555A>G				NR_026793				Homo sapiens, clone IMAGE:5172288, mRNA.												0						GAAAAGGCCCAAACACATGCT	0.512000													3	48					0	0	0.115264	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	Missense_Mutation	SNP	A	G	G	rs2257765		TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr10:38654432A>G	uc010qex.1	+	5	599	c.524A>G	c.(523-525)AAT>AGT	p.N175S	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Missense_Mutation_p.N173S					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						TCATCTCGCAATGCAAGGAAA	0.453000													4	55					0	0	0.150653	0	0
FRMPD2	143162	broad.mit.edu	37	10	49381132	49381132	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr10:49381132G>A	uc001jgi.2	-	25	3187	c.3080C>T	c.(3079-3081)GCA>GTA	p.A1027V	FRMPD2_uc001jgh.2_Missense_Mutation_p.A995V|FRMPD2_uc001jgj.2_Missense_Mutation_p.A1005V|FRMPD2L1_uc001jgf.2_Missense_Mutation_p.A38V|FRMPD2_uc001jgg.2_5'UTR|FRMPD2_uc001jgk.2_5'UTR	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	1027	PDZ 2.				tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		GACCAGTCTTGCAACCTAGAA	0.463000													5	89					0	0	0.217242	0	0
FRMPD2	143162	broad.mit.edu	37	10	49446159	49446159	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr10:49446159G>A	uc001jgi.2	-	8	903	c.796C>T	c.(796-798)CCA>TCA	p.P266S	FRMPD2_uc001jgh.2_Missense_Mutation_p.P235S|FRMPD2_uc001jgj.2_Missense_Mutation_p.P244S	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	266					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		TCTGCTCCTGGAAGAGCGCTG	0.617000													12	68					0	0	0.387290	0	0
SFTPD	6441	broad.mit.edu	37	10	81702188	81702188	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr10:81702188C>T	uc001kbh.2	-	4	432	c.389G>A	c.(388-390)GGA>GAA	p.G130E	MBL1P_uc001kbf.2_Intron	NM_003019	NP_003010	P35247	SFTPD_HUMAN	pulmonary surfactant-associated protein D	130	Collagen-like.				cell junction assembly|innate immune response|lung alveolus development|macrophage chemotaxis|negative regulation of interleukin-2 biosynthetic process|negative regulation of T cell proliferation|positive regulation of phagocytosis|reactive oxygen species metabolic process|receptor-mediated endocytosis|respiratory gaseous exchange|surfactant homeostasis	collagen|endocytic vesicle|extracellular space|lysosome	bacterial cell surface binding|protein binding|sugar binding			skin(1)	1	Breast(12;0.000615)|Prostate(51;0.0095)|all_epithelial(25;0.027)		Epithelial(14;0.0244)|all cancers(16;0.0558)|Colorectal(32;0.109)			GCCCTGAGGTCCTATGTTCCC	0.612000													11	63					0	0	0.387290	0	0
CYP2C8	1558	broad.mit.edu	37	10	96824665	96824665	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr10:96824665G>A	uc001kkb.2	-	4	629	c.534C>T	c.(532-534)ATC>ATT	p.I178I	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Silent_p.I108I|CYP2C8_uc010qob.1_Silent_p.I92I|CYP2C8_uc010qoc.1_Silent_p.I76I|CYP2C8_uc010qod.1_Silent_p.I92I	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	178					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	CAACGGAGCAGATCACATTGC	0.333000													11	111					0	0	0.411799	0	0
SLIT1	6585	broad.mit.edu	37	10	98816131	98816131	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr10:98816131C>T	uc001kmw.2	-	13	1500	c.1248G>A	c.(1246-1248)AAG>AAA	p.K416K	SLIT1_uc009xvh.1_Silent_p.K426K	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	416	LRR 11.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		GGCTCTGGATCTTGTTGTCAT	0.597000													13	182					0	0	0.457914	0	0
NFKB2	4791	broad.mit.edu	37	10	104156785	104156785	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr10:104156785C>T	uc001kvb.2	+	6	633	c.368C>T	c.(367-369)TCT>TTT	p.S123F	NFKB2_uc001kva.2_Missense_Mutation_p.S123F|NFKB2_uc010qqk.1_Missense_Mutation_p.S123F|NFKB2_uc001kvd.2_Missense_Mutation_p.S123F|NFKB2_uc009xxc.2_Missense_Mutation_p.S123F	NM_001077494	NP_001070962	Q00653	NFKB2_HUMAN	nuclear factor of kappa light polypeptide gene	123	RHD.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	Bcl3/NF-kappaB2 complex|cytosol|nucleoplasm	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			lung(3)	3		Colorectal(252;0.00957)		Epithelial(162;3.4e-08)|all cancers(201;6.41e-07)		TGCGCCGTTTCTGTGGGGCCC	0.632000			T	IGH@	B-NHL								10	45					0	0	0.361761	0	0
OR52M1	119772	broad.mit.edu	37	11	4567036	4567036	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr11:4567036G>C	uc010qyf.1	+	1	616	c.616G>C	c.(616-618)GGC>CGC	p.G206R		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	206	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCTGAGCATCGGCTTTCTGGT	0.502000													11	261					0	0	0.361761	0	0
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5624860	5624860	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr11:5624860C>T	uc001mbf.2	+	2	646	c.402C>T	c.(400-402)CTC>CTT	p.L134L	HBG2_uc001mak.1_Intron|TRIM6_uc009yeo.1_Intron|TRIM6_uc010qzj.1_5'UTR|TRIM6_uc001mbc.1_Silent_p.L106L|TRIM6_uc001mbe.2_5'UTR|TRIM6_uc010qzk.1_Intron|TRIM6_uc010qzl.1_Intron|TRIM6_uc001mbd.2_Silent_p.L134L|TRIM6_uc001mbg.1_5'Flank|TRIM6_uc009yep.1_5'Flank	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite	134						intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		AACTGCAGCTCTTCTGTCAGG	0.557000													6	129					0	0	0.217242	0	0
OR52N1	79473	broad.mit.edu	37	11	5809989	5809989	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr11:5809989G>A	uc010qzo.1	-	1	58	c.58C>T	c.(58-60)CCT>TCT	p.P20S	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001913	NP_001001913	Q8NH53	O52N1_HUMAN	olfactory receptor, family 52, subfamily N,	20	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		TCCAAACCAGGGATGCCATTT	0.433000													4	65					0	0	0.150653	0	0
OR56A1	120796	broad.mit.edu	37	11	6048614	6048614	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr11:6048614C>T	uc010qzw.1	-	1	321	c.321G>A	c.(319-321)CAG>CAA	p.Q107Q		NM_001001917	NP_001001917	Q8NGH5	O56A1_HUMAN	olfactory receptor, family 56, subfamily A,	107	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGATGAACATCTGGAGGAAGC	0.552000													6	123					0	0	0.217242	0	0
NLRP10	338322	broad.mit.edu	37	11	7981382	7981382	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr11:7981382C>T	uc001mfv.1	-	2	1794	c.1777G>A	c.(1777-1779)GAA>AAA	p.E593K		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	593							ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GATTTCTTTTCATTTGAATGT	0.368000													4	46					0	0	0.217242	0	0
INSC	387755	broad.mit.edu	37	11	15134070	15134070	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr11:15134070G>A	uc001mly.2	+	1	101	c.55G>A	c.(55-57)GGT>AGT	p.G19S	INSC_uc001mlz.2_5'Flank	NM_001031853	NP_001027024	Q1MX18	INSC_HUMAN	inscuteable isoform a	19					cell differentiation|nervous system development	cytoplasm	binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)	5						AGGTGGCTGGGGTCTATGGGG	0.512000													7	52					0	0	0.278610	0	0
OR8H2	390151	broad.mit.edu	37	11	55872957	55872957	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr11:55872957G>A	uc010riy.1	+	1	439	c.439G>A	c.(439-441)GGG>AGG	p.G147R		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	147	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					TCTCATCACTGGGCCTTATGT	0.453000										HNSCC(53;0.14)			20	311					0	0	0.575678	0	0
OR5B21	219968	broad.mit.edu	37	11	58275399	58275399	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr11:58275399G>A	uc010rki.1	-	1	180	c.180C>T	c.(178-180)TTC>TTT	p.F60F		NM_001005218	NP_001005218	A6NL26	OR5BL_HUMAN	olfactory receptor, family 5, subfamily B,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GGTTACTGAGGAAAAAGTACA	0.502000													7	96					0	0	0.248553	0	0
ATG2A	23130	broad.mit.edu	37	11	64677347	64677347	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr11:64677347G>A	uc001obx.2	-	14	2028	c.1913C>T	c.(1912-1914)GCA>GTA	p.A638V		NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	638							protein binding			ovary(1)|central_nervous_system(1)	2						GGCCCGGGGTGCAGAGAGCCG	0.711000													11	96					0	0	0.411799	0	0
RELA	5970	broad.mit.edu	37	11	65422357	65422357	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr11:65422357G>A	uc001ofg.2	-	11	1288	c.1148C>T	c.(1147-1149)CCT>CTT	p.P383L	RELA_uc001ofh.2_Missense_Mutation_p.P380L|RELA_uc010ron.1_Missense_Mutation_p.P394L|RELA_uc009yqr.2_Missense_Mutation_p.P330L|RELA_uc001ofe.2_3'UTR|RELA_uc001off.2_Missense_Mutation_p.P383L	NM_021975	NP_068810	Q04206	TF65_HUMAN	v-rel reticuloendotheliosis viral oncogene	383					anti-apoptosis|cellular defense response|cytokine-mediated signaling pathway|defense response to virus|inflammatory response|innate immune response|interspecies interaction between organisms|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription, DNA-dependent|nerve growth factor receptor signaling pathway|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of inflammatory response|response to interleukin-1|response to UV-B|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|transcription factor complex	activating transcription factor binding|chromatin binding|identical protein binding|NF-kappaB binding|phosphate binding|protein kinase binding|protein N-terminus binding|repressing transcription factor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|ubiquitin protein ligase binding			lung(3)|ovary(1)	4						gacttggggaggggccggggc	0.199000													3	13					0	0	0.115264	0	0
ODZ4	26011	broad.mit.edu	37	11	78380232	78380232	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr11:78380232C>T	uc001ozl.3	-	32	7621	c.7158G>A	c.(7156-7158)GGG>GGA	p.G2386G	ODZ4_uc001ozk.3_Silent_p.G611G|ODZ4_uc009yvb.1_Silent_p.G970G	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2386	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						TGTAGATCTCCCCATAGGCTG	0.488000													4	53					0	0	0.150653	0	0
PRCP	5547	broad.mit.edu	37	11	82549517	82549517	+	Nonsense_Mutation	SNP	G	A	A	rs150477159	byFrequency	TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr11:82549517G>A	uc001ozs.2	-	8	1299	c.1186C>T	c.(1186-1188)CAA>TAA	p.Q396*	PRCP_uc001ozr.2_Nonsense_Mutation_p.Q417*	NM_005040	NP_005031	P42785	PCP_HUMAN	prolylcarboxypeptidase isoform 1 preproprotein	396					blood coagulation, intrinsic pathway|proteolysis	lysosome|plasma membrane	protein binding|serine-type carboxypeptidase activity			skin(1)	1						CCCCACTGTTGAAAACAGTCA	0.433000													8	55					0	0	0.307466	0	0
NAALAD2	10003	broad.mit.edu	37	11	89868008	89868009	+	Splice_Site	DNP	GG	AA	AA			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr11:89868008_89868009GG>AA	uc001pdf.3	+	1	191	c.82_splice	c.e1+1	p.G28_splice	NAALAD2_uc009yvx.2_Splice_Site_p.G28_splice|NAALAD2_uc009yvy.2_Splice_Site_p.G28_splice|NAALAD2_uc001pdd.2_Splice_Site_p.G28_splice|NAALAD2_uc001pde.2_Splice_Site_p.G28_splice	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2						proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				ATTTATGGTGGGTAAGTGAACA	0.554000													5	99					0	0	0.115264	0	0
GPR83	10888	broad.mit.edu	37	11	94113447	94113447	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr11:94113447G>A	uc001pet.2	-	4	1312	c.1140C>T	c.(1138-1140)TCC>TCT	p.S380S		NM_016540	NP_057624	Q9NYM4	GPR83_HUMAN	G protein-coupled receptor 83 precursor	380	Cytoplasmic (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			central_nervous_system(2)|ovary(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				CCACCCTGAAGGAAGGAACTG	0.562000													11	111					0	0	0.411799	0	0
MMP27	64066	broad.mit.edu	37	11	102564653	102564653	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr11:102564653C>T	uc001phd.1	-	8	1200	c.1177G>A	c.(1177-1179)GGC>AGC	p.G393S		NM_022122	NP_071405	Q9H306	MMP27_HUMAN	matrix metalloproteinase 27 precursor	393	Hemopexin-like 3.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(8;0.000843)|all_epithelial(12;0.00362)|Lung NSC(15;0.21)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0509)|Lung(13;0.0696)|LUSC - Lung squamous cell carcinoma(19;0.13)|all cancers(10;0.176)	BRCA - Breast invasive adenocarcinoma(274;0.0151)		CACCAAATGCCCACAAAGAAG	0.363000													8	107					0	0	0.307466	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106558296	106558296	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr11:106558296G>A	uc001pjg.1	-	8	2568	c.2178C>T	c.(2176-2178)TTC>TTT	p.F726F	GUCY1A2_uc010rvo.1_Silent_p.F747F|GUCY1A2_uc009yxn.1_Silent_p.F757F	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	726					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		TCTCCCGGAGGAACATGGTGC	0.493000													16	143					0	0	0.520397	0	0
MLL	4297	broad.mit.edu	37	11	118365449	118365449	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr11:118365449C>T	uc001pta.2	+	18	5344	c.5321C>T	c.(5320-5322)TCC>TTC	p.S1774F	MLL_uc001ptb.2_Missense_Mutation_p.S1777F	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1774					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		GTCAAAAAGTCCAGGTTTTGG	0.328000			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								4	33					0	0	0.184627	0	0
MFRP	83552	broad.mit.edu	37	11	119217021	119217021	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr11:119217021G>A	uc001pwj.2	-	2	278	c.118C>T	c.(118-120)CCA>TCA	p.P40S	MFRP_uc010rzf.1_RNA|MFRP_uc010rzg.1_Missense_Mutation_p.P40S	NM_031433	NP_113621	Q9BXJ0	C1QT5_HUMAN	membrane frizzled-related protein	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						collagen					0		Medulloblastoma(222;0.0523)|Breast(348;0.174)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.84e-05)		GCATCCTCTGGGAAAACTGGG	0.632000													6	32					0	0	0.248553	0	0
LOC341056	341056	broad.mit.edu	37	11	122889144	122889144	+	RNA	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr11:122889144C>T	uc010rzt.1	+	1		c.871C>T				NR_027288				full-length cDNA clone CS0DC021YJ17 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).												0						GGGAAGATTCCGAGTTGTTGC	0.498000													8	100					0	0	0.307466	0	0
ADAMTS15	170689	broad.mit.edu	37	11	130343185	130343185	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr11:130343185C>T	uc010scd.1	+	8	2322	c.2322C>T	c.(2320-2322)CCC>CCT	p.P774P		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	774	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		CTTCCCGGCCCATCCTGGAGC	0.677000													13	124					0	0	0.411799	0	0
AKAP3	10566	broad.mit.edu	37	12	4736120	4736120	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr12:4736120G>A	uc001qnb.3	-	4	2177	c.1948C>T	c.(1948-1950)CTT>TTT	p.L650F		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	650					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						AGCCCAGAAAGGGCACCAGGG	0.522000													7	74					0	0	0.248553	0	0
APOBEC1	339	broad.mit.edu	37	12	7802272	7802272	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr12:7802272C>T	uc001qtb.2	-	5	616	c.582G>A	c.(580-582)AAG>AAA	p.K194K	APOBEC1_uc001qtc.2_Silent_p.K149K|APOBEC1_uc010sgf.1_Silent_p.K194K	NM_001644	NP_001635	P41238	ABEC1_HUMAN	apolipoprotein B mRNA editing enzyme	194					cytidine to uridine editing|DNA demethylation|lipid metabolic process|mRNA modification|mRNA processing|negative regulation of methylation-dependent chromatin silencing	nucleoplasm	cytidine deaminase activity|RNA binding|zinc ion binding				0						TTCTTGAAATCTTTAAACAGG	0.313000													4	45					0	0	0.150653	0	0
LOC653113	653113	broad.mit.edu	37	12	8384474	8384474	+	RNA	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr12:8384474C>T	uc010sgk.1	-	5		c.1314G>A				NR_024254				Homo sapiens family with sequence similarity 86, member A pseudogene (LOC653113), non-coding RNA.												0						TGGCCAGAAGCTGAAATGACG	0.577000													15	46					0	0	0.539581	0	0
PRB2	653247	broad.mit.edu	37	12	11546725	11546725	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr12:11546725C>T	uc010shk.1	-	3	322	c.287G>A	c.(286-288)GGA>GAA	p.G96E		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGTGGCTTTCCTGGAGGTGG	0.612000													22	628					0	0	0.654019	0	0
SOX5	6660	broad.mit.edu	37	12	23818466	23818466	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr12:23818466G>A	uc001rfw.2	-	7	945	c.843C>T	c.(841-843)CCC>CCT	p.P281P	SOX5_uc001rfx.2_Silent_p.P268P|SOX5_uc001rfy.2_Silent_p.P268P|SOX5_uc010siv.1_Silent_p.P268P|SOX5_uc010siw.1_RNA|SOX5_uc001rfz.1_Silent_p.P233P	NM_006940	NP_008871	P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5 isoform a	281					transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(5)|lung(1)	6						GAGGGAATACGGGAATCATTA	0.512000													18	217					0	0	0.592651	0	0
C12orf77	196415	broad.mit.edu	37	12	25149226	25149226	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr12:25149226C>T	uc001rgf.2	-	2	256	c.51G>A	c.(49-51)AAG>AAA	p.K17K		NM_001101339	NP_001094809	C9JDV5	CL097_HUMAN	hypothetical protein LOC196415	17											0						TGCTGGCTTCCTTTATGACTA	0.423000													6	76					0	0	0.217242	0	0
ITPR2	3709	broad.mit.edu	37	12	26775249	26775249	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr12:26775249G>A	uc001rhg.2	-	25	3629	c.3212C>T	c.(3211-3213)CCT>CTT	p.P1071L		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	1071	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					AGACAGCAAAGGCGGGTAGTC	0.463000													5	64					0	0	0.184627	0	0
KRT6B	3854	broad.mit.edu	37	12	52841142	52841142	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr12:52841142C>T	uc001sak.2	-	9	1575	c.1527G>A	c.(1525-1527)CTG>CTA	p.L509L		NM_005555	NP_005546	P04259	K2C6B_HUMAN	keratin 6B	509	Tail.				ectoderm development	keratin filament	structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.083)		TTCCTCCACCCAGGCCTAAGC	0.627000													8	87					0	0	0.278610	0	0
KRT73	319101	broad.mit.edu	37	12	53009975	53009975	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr12:53009975C>T	uc001sas.2	-	2	672	c.637G>A	c.(637-639)GAA>AAA	p.E213K		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	213	Coil 1B.|Rod.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		TCCACCACTTCGCGCACGCTC	0.627000													23	170					0	0	0.624587	0	0
OR10A7	121364	broad.mit.edu	37	12	55615043	55615043	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr12:55615043C>T	uc010spf.1	+	1	235	c.235C>T	c.(235-237)CCA>TCA	p.P79S		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	79	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						GGTTATGGTGCCAAAAATGCT	0.413000													14	189					0	0	0.457914	0	0
RDH16	8608	broad.mit.edu	37	12	57345813	57345813	+	Nonstop_Mutation	SNP	T	C	C			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr12:57345813T>C	uc001smi.3	-	4	1126	c.954A>G	c.(952-954)TGA>TGG	p.*318W	RDH16_uc009zpa.2_Nonstop_Mutation_p.*173W	NM_003708	NP_003699	O75452	RDH16_HUMAN	retinol dehydrogenase 16	318					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	binding|electron carrier activity|retinol dehydrogenase activity				0						AACCTTAGCTTCATAGAGCCT	0.552000													7	47					0	0	0.278610	0	0
LRP1	4035	broad.mit.edu	37	12	57566960	57566960	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr12:57566960C>T	uc001snd.2	+	21	3639	c.3173C>T	c.(3172-3174)CCC>CTC	p.P1058L		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1058	Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GCCACGAGGCCCCCTGGTGGC	0.672000											OREG0021936	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	66					0	0	0.150653	0	0
EEA1	8411	broad.mit.edu	37	12	93244985	93244985	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr12:93244985G>A	uc001tck.2	-	9	965	c.700C>T	c.(700-702)CAA>TAA	p.Q234*		NM_003566	NP_003557	Q15075	EEA1_HUMAN	early endosome antigen 1, 162kD	234	Potential.				early endosome to late endosome transport|synaptic vesicle to endosome fusion|vesicle fusion	cytosol|early endosome membrane|extrinsic to plasma membrane|membrane fraction	1-phosphatidylinositol binding|calmodulin binding|GTP-dependent protein binding|protein homodimerization activity|zinc ion binding			ovary(2)|skin(1)	3						ATTAGTGTTTGAACTTGGACC	0.363000													5	45					0	0	0.217242	0	0
SLC17A8	246213	broad.mit.edu	37	12	100774588	100774588	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr12:100774588G>T	uc010svi.1	+	2	524	c.211G>T	c.(211-213)GGC>TGC	p.G71C	SLC17A8_uc009ztx.2_Missense_Mutation_p.G71C	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	71	Cytoplasmic (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						CCACTGCTGCGGCCTCCCCAA	0.537000													15	203					2.32078e-09	2.34606e-09	0.479597	1	0
APPL2	55198	broad.mit.edu	37	12	105582194	105582194	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr12:105582194C>T	uc001tlf.1	-	17	1709	c.1491G>A	c.(1489-1491)CGG>CGA	p.R497R	APPL2_uc010swt.1_Silent_p.R454R|APPL2_uc001tlg.1_Silent_p.R251R|APPL2_uc010swu.1_Silent_p.R503R|APPL2_uc009zuq.2_Silent_p.R454R	NM_018171	NP_060641	Q8NEU8	DP13B_HUMAN	adaptor protein, phosphotyrosine interaction, PH	497	PID.				cell cycle|cell proliferation|signal transduction	early endosome membrane|nucleus	protein binding			upper_aerodigestive_tract(1)	1						ATCCCAAAAACCGAACTATAA	0.428000													6	55					0	0	0.217242	0	0
ATP2A2	488	broad.mit.edu	37	12	110782771	110782771	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr12:110782771C>T	uc001tqk.3	+	17	3165	c.2602C>T	c.(2602-2604)CAG>TAG	p.Q868*	ATP2A2_uc001tql.3_Nonsense_Mutation_p.Q868*|ATP2A2_uc010sxy.1_Nonsense_Mutation_p.Q841*|ATP2A2_uc001tqn.3_5'Flank|ATP2A2_uc009zvn.2_5'Flank	NM_170665	NP_733765	P16615	AT2A2_HUMAN	ATPase, Ca++ transporting, slow twitch 2 isoform	868	Lumenal (By similarity).				ATP biosynthetic process|cell adhesion|epidermis development|platelet activation|sarcoplasmic reticulum calcium ion transport	integral to plasma membrane|microsome|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|protein C-terminus binding|S100 alpha binding			ovary(3)|skin(1)	4						GTCCTTCTACCAGCTGGTACT	0.493000													11	91					0	0	0.361761	0	0
C12orf51	283450	broad.mit.edu	37	12	112600868	112600868	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr12:112600868G>A	uc009zwc.2	-	68	11850	c.11832C>T	c.(11830-11832)ATC>ATT	p.I3944I		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						CTGGGGGGGCGATCTTCATGG	0.627000													19	151					0	0	0.608945	0	0
C12orf51	283450	broad.mit.edu	37	12	112691908	112691908	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr12:112691908T>C	uc009zwc.2	-	15	2108	c.2090A>G	c.(2089-2091)AAC>AGC	p.N697S	C12orf51_uc010syk.1_Missense_Mutation_p.N529S|C12orf51_uc001tts.2_Missense_Mutation_p.N520S|C12orf51_uc001ttt.3_Missense_Mutation_p.N518S	NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						TCCCAGTGTGTTGCCTCCATA	0.413000													11	105					0	0	0.479597	0	0
OAS3	4940	broad.mit.edu	37	12	113400697	113400697	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr12:113400697C>T	uc001tug.2	+	9	2161	c.2074C>T	c.(2074-2076)CGA>TGA	p.R692*		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	692	OAS domain 2.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						TGGCCAGCTTCGAAAACCCAG	0.567000													46	381					0	0	0.870114	0	0
COQ5	84274	broad.mit.edu	37	12	120966895	120966895	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr12:120966895C>T	uc001tyn.2	-	1	70	c.50G>A	c.(49-51)TGG>TAG	p.W17*	COQ5_uc001tyo.2_5'UTR|COQ5_uc010szj.1_Nonsense_Mutation_p.W17*	NM_032314	NP_115690	Q5HYK3	COQ5_HUMAN	coenzyme Q5 homolog, methyltransferase	17					ubiquinone biosynthetic process	mitochondrion	methyltransferase activity			ovary(1)	1	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CGCCCGCGACCACCCACGGCC	0.652000													9	52					0	0	0.335167	0	0
TMEM132D	121256	broad.mit.edu	37	12	129559218	129559218	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr12:129559218C>T	uc009zyl.1	-	9	2830	c.2502G>A	c.(2500-2502)TGG>TGA	p.W834*	TMEM132D_uc001uia.2_Nonsense_Mutation_p.W372*	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	834	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		CCTGACTCCCCCATTCCTGCG	0.542000													6	102					0	0	0.217242	0	0
NBEA	26960	broad.mit.edu	37	13	36229846	36229846	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr13:36229846G>A	uc001uvb.2	+	54	8465	c.8259G>A	c.(8257-8259)TGG>TGA	p.W2753*	NBEA_uc010abi.2_Nonsense_Mutation_p.W1409*|NBEA_uc010tef.1_Nonsense_Mutation_p.W546*|NBEA_uc001uvd.2_Nonsense_Mutation_p.W331*	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2753	WD 2.					cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TCTGGTACTGGAGTGGGCGGC	0.473000													12	98					0	0	0.411799	0	0
CCNA1	8900	broad.mit.edu	37	13	37014168	37014168	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr13:37014168G>A	uc001uvr.3	+	6	1296	c.946G>A	c.(946-948)GAT>AAT	p.D316N	CCNA1_uc010teo.1_Missense_Mutation_p.D272N|CCNA1_uc010abq.2_Missense_Mutation_p.D272N|CCNA1_uc010abp.2_Missense_Mutation_p.D272N|CCNA1_uc001uvs.3_Missense_Mutation_p.D315N|CCNA1_uc010abr.2_RNA	NM_003914	NP_003905	P78396	CCNA1_HUMAN	cyclin A1 isoform a	316					cell division|G2/M transition of mitotic cell cycle|male meiosis I|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|spermatogenesis	cytosol|microtubule cytoskeleton|nucleoplasm	protein kinase binding			lung(2)|skin(2)|ovary(1)	5		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.91e-07)|Epithelial(112;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0119)|GBM - Glioblastoma multiforme(144;0.0242)		CTATATCACCGATGATACATA	0.383000													12	96					0	0	0.387290	0	0
NUDT15	55270	broad.mit.edu	37	13	48619797	48619797	+	Silent	SNP	T	C	C			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr13:48619797T>C	uc001vbw.1	+	3	537	c.357T>C	c.(355-357)AGT>AGC	p.S119S		NM_018283	NP_060753	Q9NV35	NUD15_HUMAN	nudix-type motif 15	119	Interaction with PCNA.|Nudix hydrolase.						hydrolase activity|metal ion binding				0		all_cancers(8;3.75e-25)|all_epithelial(8;1.78e-13)|all_lung(13;2.85e-06)|Breast(56;0.000141)|all_hematologic(8;0.000219)|Lung NSC(96;0.000226)|Prostate(109;0.00132)|Acute lymphoblastic leukemia(8;0.0167)|Myeloproliferative disorder(33;0.039)|Hepatocellular(98;0.0556)|Lung SC(185;0.102)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(144;4.83e-07)		CTTTTCTAGGTTGGGAGTGGG	0.348000													10	84					0	0	0.335167	0	0
CHD8	57680	broad.mit.edu	37	14	21878027	21878027	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr14:21878027G>A	uc001was.1	-	11	1604	c.1510C>T	c.(1510-1512)CCA>TCA	p.P504S	CHD8_uc001war.1_Missense_Mutation_p.P400S|CHD8_uc001wav.1_5'UTR	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	783	Chromo 2.				ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		TTGAGTTCTGGGTGCCTTGAC	0.358000													6	76					0	0	0.248553	0	0
ACIN1	22985	broad.mit.edu	37	14	23532226	23532226	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr14:23532226G>A	uc001wit.3	-	14	3297	c.2969C>T	c.(2968-2970)TCC>TTC	p.S990F	ACIN1_uc001wio.3_RNA|ACIN1_uc001wip.3_Missense_Mutation_p.S232F|ACIN1_uc001wiq.3_Missense_Mutation_p.S232F|ACIN1_uc001wir.3_Missense_Mutation_p.S263F|ACIN1_uc001wis.3_Missense_Mutation_p.S671F|ACIN1_uc010akg.2_Missense_Mutation_p.S977F	NM_014977	NP_055792	Q9UKV3	ACINU_HUMAN	apoptotic chromatin condensation inducer 1	990					apoptotic chromosome condensation|erythrocyte differentiation|positive regulation of monocyte differentiation	cytosol	ATPase activity|enzyme binding|nucleic acid binding|nucleotide binding			ovary(2)|large_intestine(1)|skin(1)	4	all_cancers(95;1.36e-05)			GBM - Glioblastoma multiforme(265;0.00816)		AATGGTAATGGAAACTCCGGA	0.473000													9	207					0	0	0.361761	0	0
NOVA1	4857	broad.mit.edu	37	14	26949194	26949194	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr14:26949194G>A	uc001wpy.2	-	3	754	c.436C>T	c.(436-438)CGC>TGC	p.R146C	NOVA1_uc001wpz.2_Missense_Mutation_p.R146C|NOVA1_uc001wqa.2_Missense_Mutation_p.R24C|NOVA1_uc001wqb.2_Missense_Mutation_p.R146C	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	149					locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		TGTTTGATGCGATCTGGATTA	0.388000													9	130					0	0	0.335167	0	0
PYGL	5836	broad.mit.edu	37	14	51390787	51390787	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr14:51390787C>T	uc001wyu.2	-	5	687	c.560G>A	c.(559-561)GGA>GAA	p.G187E	PYGL_uc010tqq.1_Missense_Mutation_p.G153E|PYGL_uc001wyv.2_5'UTR|PYGL_uc010anz.1_5'UTR|PYGL_uc001wyw.3_Missense_Mutation_p.G187E	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1	187					glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	CCAAGGGTTTCCATATCTGAG	0.423000													7	107					0	0	0.248553	0	0
RDH12	145226	broad.mit.edu	37	14	68191190	68191190	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr14:68191190G>A	uc001xjz.3	+	4	393	c.69G>A	c.(67-69)AGG>AGA	p.R23R		NM_152443	NP_689656	Q96NR8	RDH12_HUMAN	retinol dehydrogenase 12	23					photoreceptor cell maintenance|response to stimulus|retinol metabolic process	intracellular	binding|retinol dehydrogenase activity			ovary(1)	1				all cancers(60;0.000704)|OV - Ovarian serous cystadenocarcinoma(108;0.00161)|BRCA - Breast invasive adenocarcinoma(234;0.00953)	Vitamin A(DB00162)	TTGCCGATAGGAAGTTCTTTG	0.468000													9	168					0	0	0.361761	0	0
ACTN1	87	broad.mit.edu	37	14	69378955	69378955	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr14:69378955G>A	uc001xkl.2	-	4	655	c.345C>T	c.(343-345)ATC>ATT	p.I115I	ACTN1_uc010ttb.1_Silent_p.I50I|ACTN1_uc001xkm.2_Silent_p.I115I|ACTN1_uc001xkn.2_Silent_p.I115I|ACTN1_uc001xko.1_Silent_p.I50I|ACTN1_uc010ttd.1_Silent_p.I94I	NM_001102	NP_001093	P12814	ACTN1_HUMAN	actinin, alpha 1 isoform b	115	CH 1.|Actin-binding.				focal adhesion assembly|negative regulation of cellular component movement|platelet activation|platelet degranulation|regulation of apoptosis	actin cytoskeleton|cytosol|extracellular region|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|sarcomere	actin binding|calcium ion binding|integrin binding|vinculin binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00605)|all cancers(60;0.00846)|OV - Ovarian serous cystadenocarcinoma(108;0.0654)		TCCCATCCACGATTTCTACAG	0.542000											OREG0022758	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	142					0	0	0.248553	0	0
C14orf174	161394	broad.mit.edu	37	14	77844855	77844855	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr14:77844855G>A	uc001xtq.1	+	1	1094	c.1094G>A	c.(1093-1095)AGA>AAA	p.R365K	TMED8_uc010ast.1_5'Flank|TMED8_uc001xto.1_5'Flank	NM_001010860	NP_001010860	Q9P1V8	SAM15_HUMAN	hypothetical protein LOC161394	365											0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0278)		GAAGAGATAAGAAAGTCAAAT	0.378000													8	87					0	0	0.278610	0	0
NRXN3	9369	broad.mit.edu	37	14	79423632	79423632	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr14:79423632G>A	uc001xun.2	+	8	1695	c.1204G>A	c.(1204-1206)GAG>AAG	p.E402K	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.E527K	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	775	Laminin G-like 4.|Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		CAATGACAACGAGTGGCACAC	0.473000													10	152					0	0	0.335167	0	0
JAG2	3714	broad.mit.edu	37	14	105621917	105621917	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr14:105621917G>A	uc001yqg.2	-	5	1174	c.770C>T	c.(769-771)ACC>ATC	p.T257I	JAG2_uc001yqh.2_Missense_Mutation_p.T257I	NM_002226	NP_002217	Q9Y219	JAG2_HUMAN	jagged 2 isoform a precursor	257	Extracellular (Potential).|EGF-like 1.				auditory receptor cell fate commitment|cell communication|cell cycle|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation|spermatogenesis|thymic T cell selection	integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding			lung(3)|breast(2)	5		all_cancers(154;0.0336)|all_epithelial(191;0.0729)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00989)|all cancers(16;0.0114)|Epithelial(46;0.0272)	Epithelial(152;0.047)|OV - Ovarian serous cystadenocarcinoma(161;0.148)|all cancers(159;0.208)		CCCAGGCACGGTGCATCCCCC	0.627000													7	108					0	0	0.248553	0	0
TTBK2	146057	broad.mit.edu	37	15	43044656	43044656	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr15:43044656G>A	uc001zqo.2	-	14	3227	c.2788C>T	c.(2788-2790)CGG>TGG	p.R930W	TTBK2_uc010bcy.2_Missense_Mutation_p.R861W	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	930					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		ATATCCTTCCGGGTTGGGGCA	0.433000													6	122					0	0	0.217242	0	0
SEMA6D	80031	broad.mit.edu	37	15	48063588	48063588	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr15:48063588A>G	uc010bek.2	+	19	3188	c.2828A>G	c.(2827-2829)AAG>AGG	p.K943R	SEMA6D_uc001zvw.2_Missense_Mutation_p.K881R|SEMA6D_uc001zvy.2_Missense_Mutation_p.K943R|SEMA6D_uc001zvz.2_Missense_Mutation_p.K887R|SEMA6D_uc001zwa.2_3'UTR|SEMA6D_uc001zwb.2_Missense_Mutation_p.K881R|SEMA6D_uc001zwc.2_Missense_Mutation_p.K868R	NM_153618	NP_705871	Q8NFY4	SEM6D_HUMAN	semaphorin 6D isoform 4 precursor	943	Cytoplasmic (Potential).				axon guidance	cytoplasm|integral to membrane|plasma membrane	receptor activity			skin(3)|breast(1)	4		all_lung(180;0.000635)|Myeloproliferative disorder(241;0.116)|Melanoma(134;0.18)		all cancers(107;1.2e-11)|GBM - Glioblastoma multiforme(94;1.2e-06)		AGCCCAACCAAGCGAGTGGAT	0.517000													12	224					0	0	0.435327	0	0
SLC27A2	11001	broad.mit.edu	37	15	50526115	50526115	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr15:50526115G>A	uc001zxw.2	+	9	1838	c.1606G>A	c.(1606-1608)GAA>AAA	p.E536K	SLC27A2_uc010bes.2_Missense_Mutation_p.E483K|SLC27A2_uc001zxx.2_Missense_Mutation_p.E301K	NM_003645	NP_003636	O14975	S27A2_HUMAN	solute carrier family 27 (fatty acid	536	Cytoplasmic (Potential).				bile acid biosynthetic process|fatty acid alpha-oxidation	endoplasmic reticulum membrane|integral to membrane|peroxisomal matrix|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity|phytanate-CoA ligase activity|pristanate-CoA ligase activity			ovary(1)|skin(1)	2		all_lung(180;0.00177)		all cancers(107;1.16e-06)|GBM - Glioblastoma multiforme(94;0.000113)		AGAAAACCATGAATTTGATGG	0.378000													6	53					0	0	0.217242	0	0
GNB5	10681	broad.mit.edu	37	15	52439677	52439677	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr15:52439677G>A	uc002abt.1	-	6	538	c.473C>T	c.(472-474)TCG>TTG	p.S158L	GNB5_uc002abr.1_Missense_Mutation_p.S116L|GNB5_uc002abs.1_Intron	NM_016194	NP_057278	O14775	GBB5_HUMAN	guanine nucleotide-binding protein, beta-5	158	WD 2.					heterotrimeric G-protein complex	GTPase activity|signal transducer activity			lung(1)	1				all cancers(107;0.0163)		GGCACATCCCGATGGGGCATA	0.468000													16	135					0	0	0.520397	0	0
UNC13C	440279	broad.mit.edu	37	15	54586181	54586181	+	Missense_Mutation	SNP	A	C	C			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr15:54586181A>C	uc002ack.2	+	9	3907	c.3907A>C	c.(3907-3909)AAG>CAG	p.K1303Q	UNC13C_uc002acl.2_Missense_Mutation_p.K133Q	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1303	C2 1.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		ACATTTCAAAAAGGAGTCAGA	0.353000													6	90					0	0	0.217242	0	0
IQCH	64799	broad.mit.edu	37	15	67786656	67786656	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr15:67786656C>T	uc002aqo.1	+	20	2969	c.2922C>T	c.(2920-2922)ATC>ATT	p.I974I	IQCH_uc002aqq.1_Silent_p.I631I|IQCH_uc002aqp.1_Missense_Mutation_p.P615S|uc002aqr.1_Intron	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	974										skin(3)|ovary(1)	4				Colorectal(3;0.0856)		TCTTCATCATCCATCAAGAAA	0.408000													6	35					0	0	0.217242	0	0
NEO1	4756	broad.mit.edu	37	15	73590734	73590734	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr15:73590734C>T	uc002avm.3	+	27	4089	c.3947C>T	c.(3946-3948)TCG>TTG	p.S1316L	NEO1_uc010ukx.1_Missense_Mutation_p.S1305L|NEO1_uc010uky.1_Missense_Mutation_p.S1263L|NEO1_uc010ukz.1_Missense_Mutation_p.S729L|NEO1_uc002avn.3_Missense_Mutation_p.S954L	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	1316	Cytoplasmic (Potential).				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						CCAGCCTCTTCGTCTCAAACA	0.493000													5	84					0	0	0.217242	0	0
CYP1A2	1544	broad.mit.edu	37	15	75044538	75044538	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr15:75044538C>T	uc002ayr.1	+	5	1180	c.1116C>T	c.(1114-1116)ATC>ATT	p.I372I		NM_000761	NP_000752	P05177	CP1A2_HUMAN	cytochrome P450, family 1, subfamily A,	372					alkaloid metabolic process|exogenous drug catabolic process|methylation|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative deethylation|oxidative demethylation|steroid catabolic process|toxin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|demethylase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding			ovary(3)|breast(1)	4					Acenocoumarol(DB01418)|Acetaminophen(DB00316)|Aciclovir(DB00787)|Alosetron(DB00969)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Anagrelide(DB00261)|Azelastine(DB00972)|Bortezomib(DB00188)|Caffeine(DB00201)|Carmustine(DB00262)|Chlordiazepoxide(DB00475)|Chlorpromazine(DB00477)|Chlorzoxazone(DB00356)|Cimetidine(DB00501)|Cinacalcet(DB01012)|Ciprofloxacin(DB00537)|Clomipramine(DB01242)|Clotrimazole(DB00257)|Clozapine(DB00363)|Conjugated Estrogens(DB00286)|Cyclobenzaprine(DB00924)|Dacarbazine(DB00851)|Desloratadine(DB00967)|Diazepam(DB00829)|Dibucaine(DB00527)|Diclofenac(DB00586)|Duloxetine(DB00476)|Enoxacin(DB00467)|Esomeprazole(DB00736)|Estradiol(DB00783)|Estrone(DB00655)|Fluorouracil(DB00544)|Flutamide(DB00499)|Fluvoxamine(DB00176)|Frovatriptan(DB00998)|Grepafloxacin(DB00365)|Haloperidol(DB00502)|Hesperetin(DB01094)|Imipramine(DB00458)|Ketoconazole(DB01026)|Leflunomide(DB01097)|Levobupivacaine(DB01002)|Levofloxacin(DB01137)|Lidocaine(DB00281)|Lomefloxacin(DB00978)|Melatonin(DB01065)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mirtazapine(DB00370)|Norfloxacin(DB01059)|Nortriptyline(DB00540)|Ofloxacin(DB01165)|Olanzapine(DB00334)|Ondansetron(DB00904)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Pefloxacin(DB00487)|Pimozide(DB01100)|Propafenone(DB01182)|Propranolol(DB00571)|Quinidine(DB00908)|Ramelteon(DB00980)|Ranitidine(DB00863)|Rasagiline(DB01367)|Rifampin(DB01045)|Riluzole(DB00740)|Rofecoxib(DB00533)|Ropinirole(DB00268)|Ropivacaine(DB00296)|Tacrine(DB00382)|Telithromycin(DB00976)|Terfenadine(DB00342)|Theophylline(DB00277)|Thiabendazole(DB00730)|Tizanidine(DB00697)|Tolbutamide(DB01124)|Verapamil(DB00661)|Warfarin(DB00682)|Zileuton(DB00744)|Zolmitriptan(DB00315)	AGGCCTTCATCCTGGAGACCT	0.602000													21	236					0	0	0.624587	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79058840	79058840	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr15:79058840C>T	uc002bej.3	-	19	3624	c.3413G>A	c.(3412-3414)GGC>GAC	p.G1138D	ADAMTS7_uc010und.1_3'UTR	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1138					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						TGGGGAGCGGCCGGCCTGGCT	0.672000													3	10					0	0	0.150653	0	0
MSLN	10232	broad.mit.edu	37	16	812724	812724	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr16:812724C>T	uc002cjw.1	+	2	95	c.44C>T	c.(43-45)ACC>ATC	p.T15I	MSLN_uc002cjt.1_Missense_Mutation_p.T15I|MSLN_uc002cju.1_Missense_Mutation_p.T15I|MSLN_uc010brd.1_Missense_Mutation_p.T15I|MSLN_uc002cjv.1_Missense_Mutation_p.T15I|MSLN_uc002cjx.1_Missense_Mutation_p.T15I	NM_013404	NP_037536	Q13421	MSLN_HUMAN	mesothelin isoform 2 preproprotein	15				TPAL -> DRP (in Ref. 2; AAC50348).	cell adhesion	anchored to membrane|extracellular region|Golgi apparatus|plasma membrane				pancreas(1)	1		Hepatocellular(780;0.00335)				TCCTGTGGGACCCCCGCCCTC	0.687000													20	253					0	0	0.575678	0	0
CREBBP	1387	broad.mit.edu	37	16	3777981	3777981	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr16:3777981G>A	uc002cvv.2	-	31	7271	c.7067C>T	c.(7066-7068)TCC>TTC	p.S2356F	CREBBP_uc002cvw.2_Missense_Mutation_p.S2318F	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	2356					cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		TGGAGGCTGGGACTGGGGCCG	0.667000			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				17	119					0	0	0.520397	0	0
A2BP1	54715	broad.mit.edu	37	16	7703888	7703888	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr16:7703888C>T	uc002cys.2	+	12	1817	c.829C>T	c.(829-831)CGC>TGC	p.R277C	A2BP1_uc010buf.1_Missense_Mutation_p.R277C|A2BP1_uc002cyr.1_Missense_Mutation_p.R276C|A2BP1_uc002cyt.2_Missense_Mutation_p.R250C|A2BP1_uc010uxz.1_Missense_Mutation_p.R320C|A2BP1_uc010uya.1_Missense_Mutation_p.R234C|A2BP1_uc002cyv.1_Missense_Mutation_p.R277C|A2BP1_uc010uyb.1_Missense_Mutation_p.R277C|A2BP1_uc002cyw.2_Missense_Mutation_p.R297C|A2BP1_uc002cyy.2_Missense_Mutation_p.R297C|A2BP1_uc002cyx.2_Missense_Mutation_p.R297C|A2BP1_uc010uyc.1_Missense_Mutation_p.R270C	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	277					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		AGGCCGCGGTCGCACCGTGTA	0.617000													5	35					0	0	0.184627	0	0
ERI2	112479	broad.mit.edu	37	16	20792028	20792028	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr16:20792028C>T	uc002dhs.2	-	11	966	c.923G>A	c.(922-924)AGG>AAG	p.R308K	ACSM3_uc002dhq.2_Intron|ACSM3_uc002dhr.2_Intron|ACSM3_uc010vba.1_Intron	NM_080663	NP_542394	A8K979	ERI2_HUMAN	exoribonuclease 2 isoform 2	Error:Variant_position_missing_in_A8K979_after_alignment						intracellular	exonuclease activity|nucleic acid binding|zinc ion binding			large_intestine(1)	1						GTAGTTTTTCCTTTGCAGACA	0.408000													9	142					0	0	0.307466	0	0
DNAH3	55567	broad.mit.edu	37	16	20986599	20986599	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr16:20986599C>T	uc010vbe.1	-	51	8215	c.8215G>A	c.(8215-8217)GAA>AAA	p.E2739K	DNAH3_uc010vbd.1_Missense_Mutation_p.E174K	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2739	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GCTTCTTTTTCATCTGCCTGC	0.428000													15	288					0	0	0.457914	0	0
HS3ST2	9956	broad.mit.edu	37	16	22926530	22926530	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr16:22926530G>A	uc002dli.2	+	2	823	c.751G>A	c.(751-753)GGC>AGC	p.G251S	HS3ST2_uc002dlj.2_RNA	NM_006043	NP_006034	Q9Y278	HS3S2_HUMAN	heparan sulfate D-glucosaminyl	251	Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 2 activity			ovary(1)|pancreas(1)	2				GBM - Glioblastoma multiforme(48;0.0299)		CATCCGCATCGGCATGTACGT	0.622000													23	170					0	0	0.639603	0	0
GSG1L	146395	broad.mit.edu	37	16	27895832	27895832	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr16:27895832G>A	uc002doz.2	-	3	610	c.525C>T	c.(523-525)TTC>TTT	p.F175F	GSG1L_uc010bya.1_Intron|GSG1L_uc010bxz.1_Silent_p.F20F|GSG1L_uc002doy.2_Silent_p.F20F	NM_001109763	NP_001103233	Q6UXU4	GSG1L_HUMAN	GSG1-like isoform 1	175	Helical; (Potential).					integral to membrane				ovary(1)	1						AGACAGCCGCGAAGGCATTGA	0.443000													7	28					0	0	0.278610	0	0
ARMC5	79798	broad.mit.edu	37	16	31471225	31471225	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr16:31471225A>G	uc002ecc.2	+	1	909	c.380A>G	c.(379-381)AAG>AGG	p.K127R	ARMC5_uc010vfn.1_Missense_Mutation_p.K222R|ARMC5_uc010vfo.1_Missense_Mutation_p.K159R|ARMC5_uc002eca.3_Missense_Mutation_p.K127R|ARMC5_uc010vfp.1_Missense_Mutation_p.K127R|ARMC5_uc002ecb.2_Missense_Mutation_p.K127R	NM_001105247	NP_001098717	Q96C12	ARMC5_HUMAN	armadillo repeat containing 5 isoform a	127							binding			pancreas(1)	1						CGCCTGCGCAAGACGCTGGAC	0.547000													4	65					0	0	0.150653	0	0
CES7	221223	broad.mit.edu	37	16	55883624	55883624	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr16:55883624C>T	uc002eip.2	-	11	1484	c.1335G>A	c.(1333-1335)ACG>ACA	p.T445T	CES7_uc002eio.2_Intron|CES7_uc002eiq.2_Silent_p.T206T|CES7_uc002eir.2_Silent_p.T339T	NM_001143685	NP_001137157	Q6NT32	EST5A_HUMAN	carboxylesterase 7 isoform 1	445						extracellular region	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.229)|Epithelial(162;0.231)		AAGCTGGCTTCGTGTCTTCAA	0.537000													16	163					0	0	0.520397	0	0
MT1DP	326343	broad.mit.edu	37	16	56678689	56678689	+	RNA	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr16:56678689G>A	uc010cci.2	+	3		c.200G>A			MT1DP_uc010vhf.1_RNA	NR_027781				Homo sapiens MTM (MTM) mRNA, complete cds.												0						AAGGGGCATTGGAGAAGTGCA	0.527000													9	80					0	0	0.361761	0	0
PMFBP1	83449	broad.mit.edu	37	16	72184716	72184716	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr16:72184716C>T	uc002fcc.3	-	5	599	c.427G>A	c.(427-429)GAG>AAG	p.E143K	PMFBP1_uc002fcd.2_Missense_Mutation_p.E143K|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_5'UTR	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	143										ovary(2)	2		Ovarian(137;0.179)				ATTTCCTCCTCATAGAGAATC	0.507000													8	117					0	0	0.278610	0	0
LDHD	197257	broad.mit.edu	37	16	75147661	75147661	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr16:75147661C>T	uc002fdm.2	-	7	1053	c.1006G>A	c.(1006-1008)GAG>AAG	p.E336K	LDHD_uc002fdn.2_Missense_Mutation_p.E313K	NM_153486	NP_705690	Q86WU2	LDHD_HUMAN	D-lactate dehydrogenase isoform 1 precursor	336							D-lactate dehydrogenase (cytochrome) activity|flavin adenine dinucleotide binding|protein binding				0						AGCTGCTCCTCCAGTGCCTGC	0.627000													13	88					0	0	0.411799	0	0
ZC3H18	124245	broad.mit.edu	37	16	88691145	88691145	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr16:88691145C>T	uc002fky.2	+	12	2234	c.2034C>T	c.(2032-2034)CCC>CCT	p.P678P	ZC3H18_uc010voz.1_Silent_p.P702P|ZC3H18_uc010chw.2_RNA|ZC3H18_uc002fkz.2_5'Flank	NM_144604	NP_653205	Q86VM9	ZCH18_HUMAN	zinc finger CCCH-type containing 18	678	Ser-rich.					nucleus	nucleic acid binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0542)		CCAGGACCCCCCCCAGGAGGT	0.667000													5	29					0	0	0.184627	0	0
ANKRD11	29123	broad.mit.edu	37	16	89348218	89348218	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr16:89348218G>A	uc002fmx.1	-	9	5193	c.4732C>T	c.(4732-4734)CTG>TTG	p.L1578L	ANKRD11_uc002fmy.1_Silent_p.L1578L|ANKRD11_uc002fnc.1_Silent_p.L1578L|ANKRD11_uc002fna.1_5'Flank|ANKRD11_uc002fnb.1_Silent_p.L1535L	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1578	Lys-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		GTCATCATCAGGTCGCCGTCC	0.577000													8	80					0	0	0.307466	0	0
CRK	1398	broad.mit.edu	37	17	1340138	1340138	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr17:1340138G>A	uc002fsl.2	-	2	686	c.553C>T	c.(553-555)CCT>TCT	p.P185S	CRK_uc002fsm.2_Missense_Mutation_p.P185S	NM_016823	NP_058431	P46108	CRK_HUMAN	v-crk sarcoma virus CT10 oncogene homolog	185	SH3 1.				actin cytoskeleton organization|activation of MAPKK activity|blood coagulation|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of transcription from RNA polymerase II promoter	cytosol|endosome|nucleus|plasma membrane	protein binding|SH2 domain binding			lung(2)|central_nervous_system(1)	3				UCEC - Uterine corpus endometrioid carcinoma (25;0.083)		TCGACGTAAGGGACTGGAATC	0.567000													19	183					0	0	0.624587	0	0
ALOX15	246	broad.mit.edu	37	17	4535500	4535500	+	Silent	SNP	T	C	C			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr17:4535500T>C	uc002fyh.2	-	12	1631	c.1617A>G	c.(1615-1617)CAA>CAG	p.Q539Q	ALOX15_uc010vsd.1_Silent_p.Q500Q|ALOX15_uc010vse.1_Silent_p.Q561Q	NM_001140	NP_001131	P16050	LOX15_HUMAN	arachidonate 15-lipoxygenase	539	Lipoxygenase.				inflammatory response|leukotriene biosynthetic process	nucleus	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			skin(3)|ovary(1)|lung(1)	5				READ - Rectum adenocarcinoma(115;0.0327)	Ciclopirox(DB01188)|Masoprocol(DB00179)|Zileuton(DB00744)	CAGAGGCGTGTTGGCCGGTGC	0.582000													5	84					0	0	0.184627	0	0
ALOX15	246	broad.mit.edu	37	17	4536722	4536722	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr17:4536722C>T	uc002fyh.2	-	9	1249	c.1235G>A	c.(1234-1236)GGA>GAA	p.G412E	ALOX15_uc010vsd.1_Missense_Mutation_p.G373E|ALOX15_uc010vse.1_Missense_Mutation_p.G434E	NM_001140	NP_001131	P16050	LOX15_HUMAN	arachidonate 15-lipoxygenase	412	Lipoxygenase.				inflammatory response|leukotriene biosynthetic process	nucleus	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			skin(3)|ovary(1)|lung(1)	5				READ - Rectum adenocarcinoma(115;0.0327)	Ciclopirox(DB01188)|Masoprocol(DB00179)|Zileuton(DB00744)	GTCGAAAATTCCCATGTCAGA	0.537000													13	179					0	0	0.435327	0	0
ARHGEF15	22899	broad.mit.edu	37	17	8222824	8222824	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr17:8222824C>T	uc002glc.2	+	15	2398	c.2277C>T	c.(2275-2277)TCC>TCT	p.S759S	ARHGEF15_uc002gld.2_Silent_p.S759S|ARHGEF15_uc010vuw.1_Silent_p.S648S	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15	759					negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						CAGACTGTTCCCAGGAACTGT	0.537000													17	270					0	0	0.539581	0	0
USP43	124739	broad.mit.edu	37	17	9631487	9631487	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr17:9631487C>T	uc010cod.2	+	15	2552	c.2552C>T	c.(2551-2553)TCG>TTG	p.S851L	USP43_uc002gma.3_Missense_Mutation_p.S540L|USP43_uc010vva.1_Missense_Mutation_p.S846L|USP43_uc010coe.2_Missense_Mutation_p.S648L|USP43_uc002gmc.3_Missense_Mutation_p.S363L	NM_153210	NP_694942	Q70EL4	UBP43_HUMAN	ubiquitin specific protease 43	851					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						TCCATTGTGTCGCTGTTGACG	0.582000													10	39					0	0	0.361761	0	0
MYH13	8735	broad.mit.edu	37	17	10219297	10219297	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr17:10219297C>T	uc002gmk.1	-	28	3874	c.3784G>A	c.(3784-3786)GAA>AAA	p.E1262K		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1262	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GCTTTGATTTCACTAAATTGA	0.448000													16	142					0	0	0.520397	0	0
MYH8	4626	broad.mit.edu	37	17	10304406	10304406	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr17:10304406C>T	uc002gmm.2	-	25	3306	c.3211G>A	c.(3211-3213)GAT>AAT	p.D1071N	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1071	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TTTTCCATATCCATTGTGGAT	0.388000									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				6	111					0	0	0.248553	0	0
MYH8	4626	broad.mit.edu	37	17	10310224	10310224	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr17:10310224C>T	uc002gmm.2	-	18	2133	c.2038G>A	c.(2038-2040)GAA>AAA	p.E680K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	680	Actin-binding.|Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						GTTTTGGTTTCATTGGGAATG	0.378000									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				7	61					0	0	0.278610	0	0
MYH4	4622	broad.mit.edu	37	17	10354649	10354649	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr17:10354649C>T	uc002gmn.2	-	28	3970	c.3859G>A	c.(3859-3861)GAA>AAA	p.E1287K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1287	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TGACCTGATTCTGTGTGTAAA	0.413000													6	102					0	0	0.278610	0	0
MYH2	4620	broad.mit.edu	37	17	10428104	10428104	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr17:10428104C>T	uc010coi.2	-	34	5069	c.4941G>A	c.(4939-4941)AGG>AGA	p.R1647R	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.R1647R|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1647	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TCCTGTAGTTCCTCAGGGCCT	0.502000													27	213					0	0	0.693898	0	0
MYH2	4620	broad.mit.edu	37	17	10441027	10441027	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr17:10441027G>A	uc010coi.2	-	15	1670	c.1542C>T	c.(1540-1542)ATC>ATT	p.I514I	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.I514I|MYH2_uc010coj.2_Silent_p.I514I	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	514	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TCCCGAAGTCGATGAACGTCC	0.473000													25	244					0	0	0.693898	0	0
RAI1	10743	broad.mit.edu	37	17	17698260	17698260	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr17:17698260C>T	uc002grm.2	+	3	2467	c.1998C>T	c.(1996-1998)GCC>GCT	p.A666A	RAI1_uc002grn.1_Silent_p.A666A	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	666						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		AGCCGGAGGCCCTGCCCGACT	0.657000													8	84					0	0	0.278610	0	0
ATPAF2	91647	broad.mit.edu	37	17	17924547	17924547	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr17:17924547C>T	uc002gse.1	-	7	775	c.622G>A	c.(622-624)GAG>AAG	p.E208K	ATPAF2_uc002gsd.1_RNA|ATPAF2_uc002gsf.1_RNA	NM_145691	NP_663729	Q8N5M1	ATPF2_HUMAN	ATP synthase mitochondrial F1 complex assembly	208					proton-transporting ATP synthase complex assembly	mitochondrion|nuclear speck	protein binding				0	all_neural(463;0.228)					GCTACAAACTCAATCCCTGCA	0.587000													4	24					0	0	0.150653	0	0
FAM83G	644815	broad.mit.edu	37	17	18882979	18882979	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr17:18882979C>T	uc002guw.2	-	4	865	c.698G>A	c.(697-699)AGA>AAA	p.R233K	SLC5A10_uc002gur.1_Intron|SLC5A10_uc002guu.1_Intron|SLC5A10_uc002gut.1_Intron|SLC5A10_uc002guv.1_Intron|SLC5A10_uc010vyl.1_Intron	NM_001039999	NP_001035088	A6ND36	FA83G_HUMAN	hypothetical protein LOC644815	233										ovary(1)|central_nervous_system(1)	2						GCTCCGCACTCTGAGATTCTG	0.592000													11	139					0	0	0.387290	0	0
CCT6B	10693	broad.mit.edu	37	17	33288404	33288404	+	Silent	SNP	C	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr17:33288404C>A	uc002hig.2	-	1	103	c.9G>T	c.(7-9)GCG>GCT	p.A3A	CCT6B_uc010ctg.2_Silent_p.A3A|CCT6B_uc010wcc.1_Silent_p.A3A|ZNF830_uc002hih.3_5'Flank	NM_006584	NP_006575	Q92526	TCPW_HUMAN	chaperonin containing TCP1, subunit 6B	3					chaperone-mediated protein complex assembly|protein folding|spermatogenesis	cytoplasm	ATP binding|protein transporter activity|unfolded protein binding			pancreas(1)	1		Ovarian(249;0.17)				CGGCCTTTATCGCAGCCATAG	0.582000													12	107					5.50884e-06	5.53867e-06	0.411799	1	0
SLFN11	91607	broad.mit.edu	37	17	33680049	33680049	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr17:33680049C>T	uc010ctp.2	-	7	2474	c.2032G>A	c.(2032-2034)GGG>AGG	p.G678R	SLFN11_uc010ctq.2_Missense_Mutation_p.G678R|SLFN11_uc002hjh.3_Missense_Mutation_p.G678R|SLFN11_uc002hjg.3_Missense_Mutation_p.G678R|SLFN11_uc010ctr.2_Missense_Mutation_p.G678R	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	678						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TACCAGTCCCCATCTTCAGTA	0.468000													15	261					0	0	0.500413	0	0
SLC4A1	6521	broad.mit.edu	37	17	42337219	42337219	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr17:42337219G>A	uc002igf.3	-	7	716	c.567C>T	c.(565-567)CTC>CTT	p.L189L	SLC4A1_uc002igg.3_Silent_p.L189L	NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	189	Cytoplasmic.				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		AGTGTTGGGGGAGCAGAGGCT	0.617000													29	110					0	0	0.706142	0	0
PLEKHM1	9842	broad.mit.edu	37	17	43531100	43531100	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr17:43531100G>A	uc002ija.2	-	7	2288	c.2118C>T	c.(2116-2118)TCC>TCT	p.S706S	PLEKHM1_uc010wjm.1_Silent_p.S678S|PLEKHM1_uc002ijb.2_Silent_p.S181S|PLEKHM1_uc010wjn.1_Silent_p.S655S|PLEKHM1_uc002ijc.2_Silent_p.S160S	NM_014798	NP_055613	Q9Y4G2	PKHM1_HUMAN	pleckstrin homology domain containing, family M	706	PH 2.				intracellular signal transduction	cytoplasm	metal ion binding				0	Renal(3;0.0405)					GAGCCTCCAAGGACAGAGAAA	0.547000													6	88					0	0	0.217242	0	0
EVPL	2125	broad.mit.edu	37	17	74006137	74006137	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr17:74006137G>A	uc002jqi.2	-	22	3377	c.3149C>T	c.(3148-3150)TCG>TTG	p.S1050L	EVPL_uc010wss.1_Missense_Mutation_p.S1072L|EVPL_uc010wst.1_Missense_Mutation_p.S520L	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1050	Central fibrous rod domain.|Potential.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CAGCCGGGCCGAGATGACGGC	0.637000													9	193					0	0	0.307466	0	0
GALR2	8811	broad.mit.edu	37	17	74073304	74073304	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr17:74073304C>T	uc002jqm.1	+	2	1037	c.956C>T	c.(955-957)TCG>TTG	p.S319L	ZACN_uc002jqn.2_5'Flank|ZACN_uc002jqo.2_5'Flank|ZACN_uc010dgu.2_5'Flank	NM_003857	NP_003848	O43603	GALR2_HUMAN	galanin receptor 2	319	Cytoplasmic (Potential).				digestion|elevation of cytosolic calcium ion concentration|feeding behavior|learning or memory|muscle contraction	integral to membrane|plasma membrane	galanin receptor activity				0						GGCCGAGCCTCGGGCCGTGTG	0.701000													3	13					0	0	0.150653	0	0
CHMP6	79643	broad.mit.edu	37	17	78971075	78971075	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr17:78971075C>T	uc002jyw.3	+	6	507	c.429C>T	c.(427-429)CTC>CTT	p.L143L		NM_024591	NP_078867	Q96FZ7	CHMP6_HUMAN	chromatin modifying protein 6	143	Potential.				cellular membrane organization|endosome transport|protein transport	cytosol|endomembrane system|late endosome membrane	protein N-terminus binding			ovary(1)	1	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0175)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			TAGACGAGCTCCTGGCAGGAA	0.622000													12	48					0	0	0.435327	0	0
EMILIN2	84034	broad.mit.edu	37	18	2891840	2891840	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr18:2891840A>G	uc002kln.2	+	4	1874	c.1715A>G	c.(1714-1716)GAA>GGA	p.E572G		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	572					cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		CCAAACAGGGAAGACCGCGCA	0.478000													10	91					0	0	0.335167	0	0
MC2R	4158	broad.mit.edu	37	18	13885041	13885041	+	Silent	SNP	C	T	T	rs141290578		TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr18:13885041C>T	uc002ksp.1	-	2	654	c.477G>A	c.(475-477)ACG>ACA	p.T159T		NM_000529	NP_000520	Q01718	ACTHR_HUMAN	melanocortin 2 receptor	159	Helical; Name=4; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	corticotropin receptor activity|protein binding			ovary(4)|skin(1)	5					Corticotropin(DB01285)|Cosyntropin(DB01284)	TGCCAGTCCCCGTGCAGAACG	0.582000													10	108					0	0	0.361761	0	0
NPC1	4864	broad.mit.edu	37	18	21136395	21136395	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr18:21136395G>A	uc002kum.3	-	8	1412	c.1138C>T	c.(1138-1140)CTC>TTC	p.L380F	NPC1_uc010xaz.1_Missense_Mutation_p.L181F|NPC1_uc010xba.1_Missense_Mutation_p.L225F	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	380			L -> F (in NPC1).		autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					GCTGACCAGAGGTCAACTGGA	0.572000													8	59					0	0	0.278610	0	0
WBP11P1	441818	broad.mit.edu	37	18	30092842	30092842	+	RNA	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr18:30092842G>A	uc010dmc.2	+	1		c.1217G>A				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						GGAAGTAGAGGAATTTTCAGA	0.423000													5	64					0	0	0.217242	0	0
ASXL3	80816	broad.mit.edu	37	18	31325318	31325318	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr18:31325318G>A	uc010dmg.1	+	12	5561	c.5506G>A	c.(5506-5508)GGA>AGA	p.G1836R	ASXL3_uc002kxq.2_Missense_Mutation_p.G1543R	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1836					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						TAGGACTGTAGGAGAACACAC	0.483000													39	326					0	0	0.796494	0	0
TCEB3B	51224	broad.mit.edu	37	18	44560884	44560884	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr18:44560884T>C	uc002lcr.1	-	1	1105	c.752A>G	c.(751-753)GAG>GGG	p.E251G	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	251					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GCATGATTTCTCCCTGATCAA	0.567000													8	86					0	0	0.335167	0	0
SMAD7	4092	broad.mit.edu	37	18	46447842	46447842	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr18:46447842G>A	uc002ldg.2	-	4	1468	c.1181C>T	c.(1180-1182)ACC>ATC	p.T394I	SMAD7_uc002ldf.2_Missense_Mutation_p.T206I|SMAD7_uc010xde.1_Missense_Mutation_p.T179I	NM_005904	NP_005895	O15105	SMAD7_HUMAN	SMAD family member 7	394	MH2.				adherens junction assembly|artery morphogenesis|BMP signaling pathway|cellular protein complex localization|negative regulation of BMP signaling pathway|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|negative regulation of pathway-restricted SMAD protein phosphorylation|negative regulation of peptidyl-serine phosphorylation|negative regulation of peptidyl-threonine phosphorylation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription by competitive promoter binding|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of ubiquitin-protein ligase activity|pathway-restricted SMAD protein phosphorylation|positive regulation of anti-apoptosis|positive regulation of cell-cell adhesion|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein stabilization|regulation of activin receptor signaling pathway|response to laminar fluid shear stress|transforming growth factor beta receptor signaling pathway|ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	centrosome|cytosol|nucleolus|plasma membrane|transcription factor complex	activin binding|beta-catenin binding|I-SMAD binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding				0	Colorectal(1;0.0518)					GATCTGCACGGTAAAGCCCGT	0.587000													6	72					0	0	0.217242	0	0
ALPK2	115701	broad.mit.edu	37	18	56202135	56202135	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr18:56202135C>T	uc002lhj.3	-	5	5498	c.5284G>A	c.(5284-5286)GAA>AAA	p.E1762K	ALPK2_uc002lhk.1_Missense_Mutation_p.E1093K	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1762							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						AATGATGTTTCGAGTTTGGGC	0.403000													20	194					0	0	0.575678	0	0
SERPINB4	6318	broad.mit.edu	37	18	61325795	61325795	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr18:61325795C>T	uc002ljg.2	-	4	447	c.421G>A	c.(421-423)GAA>AAA	p.E141K	SERPINB3_uc002lji.2_Missense_Mutation_p.E141K|SERPINB3_uc010dqa.2_Missense_Mutation_p.E141K|SERPINB3_uc010dqb.2_3'UTR			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;	141					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						CGACTTTCTTCTGGAGCATTT	0.393000													8	64					0	0	0.278610	0	0
PALM	5064	broad.mit.edu	37	19	746337	746337	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:746337C>T	uc002lpm.1	+	9	881	c.687C>T	c.(685-687)TCC>TCT	p.S229S	PALM_uc002lpn.1_Silent_p.S185S|PALM_uc010xfu.1_Silent_p.S94S	NM_002579	NP_002570	O75781	PALM_HUMAN	paralemmin isoform 1	229					cellular component movement|negative regulation of adenylate cyclase activity|negative regulation of dopamine receptor signaling pathway|positive regulation of filopodium assembly|regulation of cell shape	cytoplasmic membrane-bounded vesicle|filopodium membrane|integral to plasma membrane					0		all_epithelial(18;2.19e-21)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)|Lung(535;0.201)		CCCTGAGCTCCTCCGAGGTGG	0.667000													9	73					0	0	0.361761	0	0
ZNF77	58492	broad.mit.edu	37	19	2934251	2934251	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:2934251C>T	uc002lws.3	-	4	1005	c.874G>A	c.(874-876)GGA>AGA	p.G292R		NM_021217	NP_067040	Q15935	ZNF77_HUMAN	zinc finger protein 77	292					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|zinc ion binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|GBM - Glioblastoma multiforme(1328;2.11e-07)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.174)|STAD - Stomach adenocarcinoma(1328;0.18)		GGTTTCTCTCCAGTGTGTGTT	0.463000													5	112					0	0	0.217242	0	0
MATK	4145	broad.mit.edu	37	19	3783205	3783205	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:3783205C>T	uc002lyt.2	-	7	995	c.595G>A	c.(595-597)GAC>AAC	p.D199N	MATK_uc002lyv.2_Missense_Mutation_p.D200N|MATK_uc002lyu.2_Missense_Mutation_p.D158N|MATK_uc010dtq.2_Missense_Mutation_p.D199N	NM_139355	NP_647612	P42679	MATK_HUMAN	megakaryocyte-associated tyrosine kinase isoform	199	SH2.				cell proliferation|mesoderm development|positive regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(2)|ovary(1)|lung(1)|large_intestine(1)	5		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		GCGCCCTTGTCCTTGCTGTAA	0.657000													11	70					0	0	0.387290	0	0
DUS3L	56931	broad.mit.edu	37	19	5790260	5790260	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:5790260G>A	uc002mdc.2	-	2	282	c.185C>T	c.(184-186)CCT>CTT	p.P62L	DUS3L_uc002mdd.2_Intron|DUS3L_uc010duk.2_5'UTR|DUS3L_uc010xiw.1_RNA	NM_020175	NP_064560	Q96G46	DUS3L_HUMAN	dihydrouridine synthase 3-like isoform 1	62					tRNA processing		flavin adenine dinucleotide binding|nucleic acid binding|tRNA dihydrouridine synthase activity|zinc ion binding				0						ATTGCCAGCAGGGTCTCCTAC	0.612000													15	126					0	0	0.479597	0	0
MYO1F	4542	broad.mit.edu	37	19	8587408	8587408	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:8587408C>T	uc002mkg.2	-	27	3187	c.3073G>A	c.(3073-3075)GGG>AGG	p.G1025R		NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	1025						unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						GGCCGTTGCCCCACGCTGCGC	0.672000													3	33					0	0	0.115264	0	0
MUC16	94025	broad.mit.edu	37	19	9089551	9089551	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:9089551C>T	uc002mkp.2	-	1	2468	c.2264G>A	c.(2263-2265)GGG>GAG	p.G755E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	755	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCAGGAGTCCCTGTGGTAAT	0.473000													16	188					0	0	0.520397	0	0
MUC16	94025	broad.mit.edu	37	19	9091275	9091275	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:9091275C>T	uc002mkp.2	-	1	744	c.540G>A	c.(538-540)TGG>TGA	p.W180*		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	180	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATCTTGTGTCCCAGGGGGTCT	0.473000													5	105					0	0	0.184627	0	0
Unknown	0	broad.mit.edu	37	19	9801832	9801832	+	Missense_Mutation	SNP	C	T	T	rs62105698	by1000genomes	TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:9801832C>T	uc010xkx.1	-	3	658	c.35G>A	c.(34-36)GGT>GAT	p.G12D						RecName: Full=Zinc finger protein 562;																		ATAACAATTACCCTCAAAGAT	0.413000													6	56					0	0	0.217242	0	0
COL5A3	50509	broad.mit.edu	37	19	10106908	10106908	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:10106908C>T	uc002mmq.1	-	14	1539	c.1453G>A	c.(1453-1455)GGG>AGG	p.G485R		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	485	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CCAGTGAGCCCCACTGGACCA	0.597000													7	69					0	0	0.278610	0	0
LDLR	3949	broad.mit.edu	37	19	11216168	11216168	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:11216168C>T	uc002mqk.3	+	4	754	c.586C>T	c.(586-588)CCC>TCC	p.P196S	LDLR_uc010xlk.1_Missense_Mutation_p.P196S|LDLR_uc010xll.1_Missense_Mutation_p.P155S|LDLR_uc010xlm.1_Missense_Mutation_p.P49S|LDLR_uc010xln.1_Intron|LDLR_uc010xlo.1_Intron	NM_000527	NP_000518	P01130	LDLR_HUMAN	low density lipoprotein receptor precursor	196	LDL-receptor class A 5.|Extracellular (Potential).				cholesterol homeostasis|cholesterol metabolic process|interspecies interaction between organisms|intestinal cholesterol absorption|low-density lipoprotein particle clearance|receptor-mediated endocytosis	clathrin-coated endocytic vesicle membrane|coated pit|early endosome|endosome membrane|external side of plasma membrane|integral to plasma membrane|low-density lipoprotein particle|lysosome	calcium ion binding|low-density lipoprotein receptor activity|protein binding|very-low-density lipoprotein particle receptor activity			ovary(2)|skin(2)	4		Lung NSC(9;0.000245)|Renal(1328;0.0007)|Hepatocellular(1079;0.0524)		GBM - Glioblastoma multiforme(1328;1.36e-05)|STAD - Stomach adenocarcinoma(1328;0.000766)|Lung(535;0.197)	Methyl aminolevulinate(DB00992)|Porfimer(DB00707)	GGACAGTAGCCCCTGCTCGGC	0.622000													11	86					0	0	0.361761	0	0
DNASE2	1777	broad.mit.edu	37	19	12989323	12989323	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:12989323G>A	uc002mvn.1	-	5	728	c.582C>T	c.(580-582)TTC>TTT	p.F194F	DNASE2_uc010xmr.1_Silent_p.F139F	NM_001375	NP_001366	O00115	DNS2A_HUMAN	deoxyribonuclease II, lysosomal precursor	194					apoptosis	lysosome	deoxyribonuclease II activity|DNA binding|protein binding				0						CCAAGTCGGGGAATTCCTGGG	0.562000								Direct_reversal_of_damage					8	70					0	0	0.278610	0	0
CD97	976	broad.mit.edu	37	19	14513596	14513596	+	Silent	SNP	A	G	G			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:14513596A>G	uc002myl.2	+	12	1494	c.1371A>G	c.(1369-1371)GAA>GAG	p.E457E	CD97_uc002mym.2_Silent_p.E408E|CD97_uc002myn.2_Silent_p.E364E	NM_078481	NP_510966	P48960	CD97_HUMAN	CD97 antigen isoform 1 precursor	457	Extracellular (Potential).				cell adhesion|cell-cell signaling|cellular component movement|immune response|inflammatory response|neuropeptide signaling pathway	extracellular space|integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(3)|breast(1)	4						ACACCAAGGAACTCAACTCCC	0.557000													17	129					0	0	0.539581	0	0
CYP4F12	66002	broad.mit.edu	37	19	15794500	15794500	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:15794500G>A	uc002nbl.2	+	7	906	c.845G>A	c.(844-846)GGT>GAT	p.G282D		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					CCCACTCAGGGTATTGATGAT	0.527000													14	193					0	0	0.435327	0	0
OR10H4	126541	broad.mit.edu	37	19	16060459	16060459	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:16060459C>T	uc010xov.1	+	1	642	c.642C>T	c.(640-642)TTC>TTT	p.F214F		NM_001004465	NP_001004465	Q8NGA5	O10H4_HUMAN	olfactory receptor, family 10, subfamily H,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						GCTGTTTATTCCTCATCATCC	0.488000													28	306					0	0	0.717897	0	0
FCHO1	23149	broad.mit.edu	37	19	17892536	17892536	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:17892536C>T	uc010ebb.2	+	22	2033	c.1844C>T	c.(1843-1845)CCG>CTG	p.P615L	FCHO1_uc002nhg.3_Missense_Mutation_p.P615L|FCHO1_uc002nhh.2_Missense_Mutation_p.P615L|FCHO1_uc010xpw.1_Missense_Mutation_p.P565L|FCHO1_uc002nhi.2_Missense_Mutation_p.P71L|FCHO1_uc002nhj.2_5'UTR	NM_001161358	NP_001154830	O14526	FCHO1_HUMAN	FCH domain only 1 isoform b	615										breast(1)	1						TCCCGGGGTCCGAGCCCTGTG	0.627000													15	190					0	0	0.479597	0	0
IL12RB1	3594	broad.mit.edu	37	19	18179295	18179295	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:18179295C>T	uc002nhw.1	-	11	1295	c.1231G>A	c.(1231-1233)GAA>AAA	p.E411K	IL12RB1_uc010xqb.1_Missense_Mutation_p.E411K|IL12RB1_uc002nhx.1_Missense_Mutation_p.E451K	NM_005535	NP_005526	P42701	I12R1_HUMAN	interleukin 12 receptor, beta 1 isoform 1	411	Extracellular (Potential).|Fibronectin type-III 4.				cellular response to interferon-gamma|interleukin-12-mediated signaling pathway|positive regulation of activated T cell proliferation|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response	interleukin-12 receptor complex|interleukin-23 receptor complex	cytokine receptor activity			pancreas(1)	1						TAACACTTTTCCTGCCCCATT	0.478000													8	215					0	0	0.278610	0	0
ZNF99	7652	broad.mit.edu	37	19	22940632	22940632	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:22940632C>T	uc010xrh.1	-	5	1806	c.1806G>A	c.(1804-1806)AGG>AGA	p.R602R		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TCTTATGTTTCCTAAGGGCTG	0.373000													6	57					0	0	0.217242	0	0
PRX	57716	broad.mit.edu	37	19	40903059	40903059	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:40903059G>A	uc002onr.2	-	7	1469	c.1200C>T	c.(1198-1200)CTC>CTT	p.L400L	PRX_uc002onq.2_Silent_p.L261L|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	400					axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GGGGCTCCAAGAGGGAAAGCC	0.607000													14	177					0	0	0.500413	0	0
ADCK4	79934	broad.mit.edu	37	19	41206032	41206032	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:41206032G>A	uc002oor.2	-	12	1385	c.1083C>T	c.(1081-1083)TTC>TTT	p.F361F	ADCK4_uc002oop.1_Silent_p.F38F|ADCK4_uc002ooq.1_Silent_p.F320F	NM_024876	NP_079152	Q96D53	ADCK4_HUMAN	aarF domain containing kinase 4 isoform a	361	Protein kinase.					integral to membrane	protein serine/threonine kinase activity				0			Lung(22;9.49e-05)|LUSC - Lung squamous cell carcinoma(20;0.000219)			GCATGAATCGGAACTCAAACA	0.488000													5	82					0	0	0.184627	0	0
CYP2B7P1	1556	broad.mit.edu	37	19	41442124	41442124	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:41442124G>A	uc010ehg.1	+	2	302	c.294G>A	c.(292-294)CGG>CGA	p.R98R	CYP2A7_uc002opo.2_Intron|CYP2B7P1_uc010ehh.1_Silent_p.R98R|CYP2B7P1_uc002opq.2_RNA					SubName: Full=Cytochrome P450 2B7 short isoform; SubName: Full=CYP2B protein;											ovary(1)|skin(1)	2						TCTCTGGCCGGGGAAAAATCG	0.607000													4	70					0	0	0.184627	0	0
CEACAM7	1087	broad.mit.edu	37	19	42192053	42192053	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:42192053G>A	uc002ori.1	-	1	44	c.42C>T	c.(40-42)CCC>CCT	p.P14P	CEACAM7_uc010ehx.2_Silent_p.P14P|CEACAM7_uc010ehy.1_Silent_p.P14P	NM_006890	NP_008821	Q14002	CEAM7_HUMAN	carcinoembryonic antigen-related cell adhesion	14						anchored to membrane|integral to membrane|plasma membrane				ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.0027)|all cancers(3;0.00979)|Epithelial(262;0.0366)		GCCCCTGCCAGGGAATGCACA	0.627000													4	62					0	0	0.150653	0	0
IRGC	56269	broad.mit.edu	37	19	44223009	44223009	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:44223009C>T	uc002oxh.2	+	2	446	c.299C>T	c.(298-300)CCA>CTA	p.P100L		NM_019612	NP_062558	Q6NXR0	IIGP5_HUMAN	immunity-related GTPase family, cinema	100						membrane	GTP binding|hydrolase activity, acting on acid anhydrides			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(69;0.0435)				TCGCCCTATCCACACCCACAG	0.647000													8	63					0	0	0.278610	0	0
ZNF235	9310	broad.mit.edu	37	19	44793170	44793170	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:44793170G>A	uc002oza.3	-	5	521	c.418C>T	c.(418-420)CCC>TCC	p.P140S	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF235_uc002ozb.3_Missense_Mutation_p.P136S|ZNF235_uc010xwx.1_Missense_Mutation_p.P54S	NM_004234	NP_004225	Q14590	ZN235_HUMAN	zinc finger protein 93 homolog	140					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)	3		Prostate(69;0.0352)|all_neural(266;0.116)				ACTTGACAGGGGGAATCATGG	0.428000													11	146					0	0	0.361761	0	0
ZNF229	7772	broad.mit.edu	37	19	44932727	44932727	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:44932727G>A	uc002oze.1	-	6	2663	c.2229C>T	c.(2227-2229)CAC>CAT	p.H743H	ZNF229_uc010ejk.1_Silent_p.H397H|ZNF229_uc010ejl.1_Silent_p.H737H	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	743	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				TCCCACACACGTGGCATCTGT	0.498000													10	84					0	0	0.335167	0	0
NUP62	23636	broad.mit.edu	37	19	50412412	50412412	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:50412412C>T	uc002pqx.2	-	2	757	c.653G>A	c.(652-654)GGG>GAG	p.G218E	IL4I1_uc002pqv.1_Intron|IL4I1_uc010eno.1_Intron|IL4I1_uc002pqw.1_Intron|IL4I1_uc002pqu.1_Intron|NUP62_uc002pqy.2_Missense_Mutation_p.G218E|NUP62_uc002pqz.2_Missense_Mutation_p.G218E|NUP62_uc002pra.2_Missense_Mutation_p.G218E|NUP62_uc002prb.2_Missense_Mutation_p.G218E|NUP62_uc002prc.2_Missense_Mutation_p.G218E	NM_153719	NP_714941	P37198	NUP62_HUMAN	nucleoporin 62kDa	218	15 X 9 AA approximate repeats.|Ala-rich.|Thr-rich.				carbohydrate metabolic process|cell death|cell surface receptor linked signaling pathway|glucose transport|hormone-mediated signaling pathway|mRNA transport|negative regulation of apoptosis|negative regulation of cell proliferation|nucleocytoplasmic transport|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription, DNA-dependent|protein transport|regulation of glucose transport|transcription, DNA-dependent|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleocytoplasmic shuttling complex|ribonucleoprotein complex|spindle pole	chromatin binding|protein serine/threonine kinase activity|receptor signaling complex scaffold activity|SH2 domain binding|structural constituent of nuclear pore|thyroid hormone receptor binding|ubiquitin binding				0		all_lung(116;1.47e-05)|all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00242)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		GAGGCTGGGCCCAGTGCTGGT	0.647000													6	153					0	0	0.248553	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50464072	50464072	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:50464072G>A	uc010ybh.1	-	2	288	c.197C>T	c.(196-198)TCT>TTT	p.S66F	SIGLEC11_uc010ybi.1_Missense_Mutation_p.S66F	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	66	Ig-like V-type.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		AGCAGCAGTAGACTCGTCCCA	0.582000													9	60					0	0	0.307466	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51955776	51955776	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:51955776G>A	uc002pwt.2	-	7	1424	c.1357C>T	c.(1357-1359)CAT>TAT	p.H453Y	SIGLEC8_uc010yda.1_Missense_Mutation_p.H344Y|SIGLEC8_uc002pwu.2_Intron|SIGLEC8_uc010eox.2_Missense_Mutation_p.H360Y	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	453	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		TTCACTTTATGGAAGCTGAGG	0.562000													8	128					0	0	0.278610	0	0
ZNF665	79788	broad.mit.edu	37	19	53668215	53668215	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:53668215C>T	uc010eqm.1	-	4	1628	c.1528G>A	c.(1528-1530)GGA>AGA	p.G510R		NM_024733	NP_079009	Q9H7R5	ZN665_HUMAN	zinc finger protein 665	445					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0196)		GGTTTTTCTCCAGTATGAACT	0.393000													12	150					0	0	0.387290	0	0
CNOT3	4849	broad.mit.edu	37	19	54646886	54646886	+	Silent	SNP	C	T	T	rs138664639		TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:54646886C>T	uc002qdj.1	+	3	368	c.57C>T	c.(55-57)TCC>TCT	p.S19S	CNOT3_uc010yel.1_Silent_p.S19S|CNOT3_uc002qdi.2_5'UTR|CNOT3_uc002qdk.1_Silent_p.S19S|CNOT3_uc010ere.1_5'Flank	NM_014516	NP_055331	O75175	CNOT3_HUMAN	CCR4-NOT transcription complex, subunit 3	19					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					AGAAGGTGTCCGAGGGCGTGG	0.552000													12	284					0	0	0.411799	0	0
NLRP11	204801	broad.mit.edu	37	19	56313060	56313060	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:56313060C>T	uc010ygf.1	-	7	2760	c.2049G>A	c.(2047-2049)AAG>AAA	p.K683K	NLRP11_uc002qlz.2_Silent_p.K530K|NLRP11_uc002qmb.2_Silent_p.K584K|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	683							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		GAGCCAAAGCCTTGAGTAAGT	0.453000													9	87					0	0	0.335167	0	0
NLRP13	126204	broad.mit.edu	37	19	56423969	56423969	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:56423969A>G	uc010ygg.1	-	5	1239	c.1214T>C	c.(1213-1215)GTT>GCT	p.V405A		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	405	NACHT.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		GATTTTCTCAACTTCACTTGA	0.458000													13	115					0	0	0.411799	0	0
NLRP13	126204	broad.mit.edu	37	19	56424525	56424525	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:56424525C>T	uc010ygg.1	-	5	683	c.658G>A	c.(658-660)GAT>AAT	p.D220N		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	220							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CTATTAGGATCCAGTAGGCGC	0.527000													26	197					0	0	0.717897	0	0
NLRP5	126206	broad.mit.edu	37	19	56549454	56549454	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:56549454C>T	uc002qmj.2	+	10	2679	c.2679C>T	c.(2677-2679)TCC>TCT	p.S893S	NLRP5_uc002qmi.2_Silent_p.S874S	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	893	LRR 7.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		TTACGACCTCCCCCAGCCTGA	0.547000													6	107					0	0	0.217242	0	0
ZNF583	147949	broad.mit.edu	37	19	56934475	56934475	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr19:56934475C>T	uc010ygl.1	+	5	613	c.448C>T	c.(448-450)CTT>TTT	p.L150F	ZNF583_uc002qnc.2_Missense_Mutation_p.L150F|ZNF583_uc010ygm.1_Missense_Mutation_p.L150F	NM_001159860	NP_001153332	Q96ND8	ZN583_HUMAN	zinc finger protein 583	150					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0564)		TAAAGAAATCCTTCCAGAAGT	0.363000													9	93					0	0	0.307466	0	0
TPO	7173	broad.mit.edu	37	2	1520694	1520694	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:1520694C>T	uc002qww.2	+	15	2649	c.2558C>T	c.(2557-2559)TCG>TTG	p.S853L	TPO_uc010ewj.2_RNA|TPO_uc002qwu.2_Missense_Mutation_p.S796L|TPO_uc002qwr.2_Missense_Mutation_p.S853L|TPO_uc002qwx.2_Missense_Mutation_p.S796L|TPO_uc010yio.1_Missense_Mutation_p.S680L|TPO_uc010yip.1_Missense_Mutation_p.S809L|TPO_uc002qwy.1_Missense_Mutation_p.S149L|TPO_uc002qwz.2_RNA	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	853	Helical; (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	ATCTCCATGTCGCTGGCTGCT	0.562000													7	69					0	0	0.307466	0	0
TAF1B	9014	broad.mit.edu	37	2	9991705	9991705	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:9991705C>T	uc002qzz.2	+	4	341	c.241C>T	c.(241-243)CAG>TAG	p.Q81*	TAF1B_uc010exc.2_Nonsense_Mutation_p.Q81*|TAF1B_uc002qzy.3_Nonsense_Mutation_p.Q81*|TAF1B_uc010yja.1_5'UTR|TAF1B_uc010exd.2_5'UTR	NM_005680	NP_005671	Q53T94	TAF1B_HUMAN	TBP-associated factor 1B	81					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|breast(1)|pancreas(1)	3	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					TGAAGGTTTCCAGTATATTCT	0.343000													7	59					0	0	0.278610	0	0
SLC4A1AP	22950	broad.mit.edu	37	2	27886751	27886752	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:27886751_27886752GG>AA	uc002rlk.3	+	1	414_415	c.132_133GG>AA	c.(130-135)AAGGAG>AAAAAG	p.E45K	SUPT7L_uc002rlh.1_5'Flank|SUPT7L_uc002rli.1_5'Flank|SUPT7L_uc010ymf.1_5'Flank|SUPT7L_uc002rlj.1_5'Flank|SUPT7L_uc010ezh.1_5'Flank	NM_018158	NP_060628	Q9BWU0	NADAP_HUMAN	solute carrier family 4 (anion exchanger),	45						cytoplasm|nucleus	double-stranded RNA binding|protein binding				0	Acute lymphoblastic leukemia(172;0.155)					GGGTTTCGAAGGAGCGGATTTC	0.574000													17	195					0	0	0.115264	0	0
BIRC6	57448	broad.mit.edu	37	2	32718649	32718649	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:32718649C>T	uc010ezu.2	+	45	8517	c.8383C>T	c.(8383-8385)CGA>TGA	p.R2795*		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	2795					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					ATTTCTTACTCGATTACAAGT	0.323000													6	63					0	0	0.217242	0	0
MRPL53	116540	broad.mit.edu	37	2	74699706	74699706	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:74699706C>T	uc002sln.2	-	1	222	c.82G>A	c.(82-84)GAA>AAA	p.E28K	CCDC142_uc002slo.2_RNA	NM_053050	NP_444278	Q96EL3	RM53_HUMAN	mitochondrial ribosomal protein L53 precursor	28						mitochondrion|ribosome					0						CTCGTCGATTCCACGTTTTTC	0.592000													6	123					0	0	0.217242	0	0
HTRA2	27429	broad.mit.edu	37	2	74757235	74757235	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:74757235C>T	uc002smi.1	+	1	704	c.102C>T	c.(100-102)GAC>GAT	p.D34D	AUP1_uc002sme.2_5'Flank|AUP1_uc002smf.2_5'Flank|AUP1_uc002smg.2_5'Flank|AUP1_uc002smh.2_5'Flank|AUP1_uc010yrx.1_5'Flank|AUP1_uc010yry.1_5'Flank|HTRA2_uc002smj.1_Silent_p.D34D|HTRA2_uc002smk.1_Silent_p.D34D|HTRA2_uc002sml.1_Silent_p.D34D|HTRA2_uc002smm.1_Intron|HTRA2_uc002smn.1_Intron|HTRA2_uc010ffl.2_5'Flank	NM_013247	NP_037379	O43464	HTRA2_HUMAN	HtrA serine peptidase 2 isoform 1 preproprotein	34					apoptosis|proteolysis|response to stress	CD40 receptor complex|endoplasmic reticulum membrane|internal side of plasma membrane|mitochondrial intermembrane space|mitochondrial membrane|nucleus	serine-type endopeptidase activity|unfolded protein binding			ovary(1)	1						TGACCCCTGACCTCCGGGCCC	0.692000													4	40					0	0	0.150653	0	0
FUNDC2P2	388965	broad.mit.edu	37	2	84518361	84518361	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:84518361G>A	uc010ffz.1	+	1	556	c.419G>A	c.(418-420)GGA>GAA	p.G140E		NR_003663				RecName: Full=FUN14 domain-containing protein 2; AltName: Full=Hepatitis C virus core-binding protein 6; AltName: Full=Cervical cancer proto-oncogene 3 protein;          Short=HCC-3;												0						GTGACTGGGGGATTTTTCGGA	0.463000													16	184					0	0	0.575678	0	0
ADRA2B	151	broad.mit.edu	37	2	96781322	96781322	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:96781322G>A	uc002svi.2	-	1	567	c.567C>T	c.(565-567)ATC>ATT	p.I189I		NM_000682	NP_000673	P18089	ADA2B_HUMAN	alpha-2B-adrenergic receptor	189	Helical; Name=5; (By similarity).				activation of MAPK activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cell-cell signaling|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|negative regulation of epinephrine secretion|negative regulation of norepinephrine secretion|positive regulation of neuron differentiation	integral to plasma membrane	alpha2-adrenergic receptor activity|epinephrine binding|protein binding			ovary(2)|lung(1)	3					Bethanidine(DB00217)|Brimonidine(DB00484)|Debrisoquin(DB04840)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Lofexidine(DB04948)|Norepinephrine(DB00368)|Yohimbine(DB01392)	GGTAGACAAGGATCATGATGA	0.642000													4	62					0	0	0.150653	0	0
MRPS9	64965	broad.mit.edu	37	2	105696467	105696467	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:105696467C>T	uc002tcn.3	+	5	504	c.436C>T	c.(436-438)CCA>TCA	p.P146S		NM_182640	NP_872578	P82933	RT09_HUMAN	mitochondrial ribosomal protein S9 precursor	146					DNA damage response, detection of DNA damage|translation	mitochondrial small ribosomal subunit	protein binding|structural constituent of ribosome				0						AGATGGCCGTCCATTTCACTA	0.343000													10	78					0	0	0.435327	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107459973	107459973	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:107459973C>T	uc002tdq.2	-	2	580	c.461G>A	c.(460-462)GGG>GAG	p.G154E	ST6GAL2_uc002tdr.2_Missense_Mutation_p.G154E|ST6GAL2_uc002tds.3_Missense_Mutation_p.G154E	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	154	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						GCCTGGCTCCCCGGGGGAAGG	0.622000													17	268					0	0	0.520397	0	0
SLC5A7	60482	broad.mit.edu	37	2	108626876	108626876	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:108626876G>A	uc002tdv.2	+	9	1578	c.1302G>A	c.(1300-1302)GGG>GGA	p.G434G	SLC5A7_uc010ywm.1_Silent_p.G187G|SLC5A7_uc010fjj.2_Silent_p.G434G|SLC5A7_uc010ywn.1_Silent_p.G321G	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	434	Extracellular (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	ACACCTATGGGGCCGTGGCAG	0.493000													7	101					0	0	0.278610	0	0
MALL	7851	broad.mit.edu	37	2	110849283	110849283	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:110849283C>T	uc002tfk.2	-	2	944	c.170G>A	c.(169-171)GGA>GAA	p.G57E	MALL_uc010fju.2_Intron	NM_005434	NP_005425	Q13021	MALL_HUMAN	mal, T-cell differentiation protein-like	57	MARVEL.				cholesterol homeostasis	clathrin-coated vesicle|Golgi membrane|integral to membrane|membrane raft|plasma membrane	protein binding			ovary(1)|skin(1)	2				Epithelial(1;0.0546)|STAD - Stomach adenocarcinoma(1;0.18)		CATCACCCATCCTTGCAGCAA	0.433000													6	140					0	0	0.278610	0	0
PSD4	23550	broad.mit.edu	37	2	113940658	113940658	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:113940658G>A	uc002tjc.2	+	2	808	c.625G>A	c.(625-627)GAA>AAA	p.E209K	PSD4_uc002tjd.2_5'UTR|PSD4_uc002tje.2_Missense_Mutation_p.E208K|PSD4_uc002tjf.2_5'Flank	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	209					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						ACCTGAGAATGAAGACTCAGG	0.642000													7	75					0	0	0.248553	0	0
CCDC93	54520	broad.mit.edu	37	2	118758452	118758452	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:118758452A>T	uc002tlj.2	-	4	434	c.308T>A	c.(307-309)CTG>CAG	p.L103Q	CCDC93_uc010fld.1_Missense_Mutation_p.L103Q	NM_019044	NP_061917	Q567U6	CCD93_HUMAN	coiled-coil domain containing 93	103										large_intestine(1)|ovary(1)	2						GTGGGGCTCCAGCTGGTGTGG	0.448000													9	82					0	0	0.335167	0	0
GLI2	2736	broad.mit.edu	37	2	121554972	121554972	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:121554972C>T	uc010flp.2	+	1	106	c.76C>T	c.(76-78)CCC>TCC	p.P26S	GLI2_uc010yyu.1_Missense_Mutation_p.P26S|GLI2_uc002tmp.1_Missense_Mutation_p.P26S|GLI2_uc010fln.1_RNA|GLI2_uc002tmq.1_5'UTR|GLI2_uc002tmr.1_5'UTR|GLI2_uc002tmt.3_5'UTR|GLI2_uc002tmu.3_5'UTR|GLI2_uc002tmv.1_Missense_Mutation_p.P26S|GLI2_uc010flo.1_5'UTR|GLI2_uc002tmw.1_Missense_Mutation_p.P26S	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	26					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				CGCTGGCTTCCCCGACCCGGG	0.617000													25	233					0	0	0.667858	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125547543	125547543	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:125547543G>A	uc002tno.2	+	18	3178	c.2814G>A	c.(2812-2814)CAG>CAA	p.Q938Q	CNTNAP5_uc010flu.2_Silent_p.Q939Q	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	938	Laminin G-like 3.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		TGAATGGACAGAAAATGGACC	0.522000													13	85					0	0	0.435327	0	0
BIN1	274	broad.mit.edu	37	2	127811009	127811009	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:127811009C>T	uc002tns.1	-	14	1597	c.1252G>A	c.(1252-1254)GAC>AAC	p.D418N	BIN1_uc010yzf.1_Intron|BIN1_uc010yzg.1_Intron|BIN1_uc002tnu.1_Intron|BIN1_uc002toa.1_Intron|BIN1_uc002tnt.1_Intron|BIN1_uc002tnv.1_Missense_Mutation_p.D375N|BIN1_uc002tnw.1_Intron|BIN1_uc002tnx.1_Intron|BIN1_uc002tny.1_Intron|BIN1_uc002tnz.1_Intron|BIN1_uc002tob.1_Intron|BIN1_uc002toc.1_Intron	NM_139343	NP_647593	O00499	BIN1_HUMAN	bridging integrator 1 isoform 1	418	Clathrin-binding.				cell proliferation|endocytosis|interspecies interaction between organisms|multicellular organismal development	actin cytoskeleton|nucleus				ovary(2)|central_nervous_system(2)|skin(2)|lung(1)	7	Colorectal(110;0.0831)			BRCA - Breast invasive adenocarcinoma(221;0.073)		TCCCAGAGGTCCCATGGAATT	0.607000													6	39					0	0	0.217242	0	0
FMNL2	114793	broad.mit.edu	37	2	153475610	153475610	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:153475610C>T	uc002tye.2	+	14	1932	c.1565C>T	c.(1564-1566)TCC>TTC	p.S522F	FMNL2_uc010fob.2_5'Flank|FMNL2_uc002tyf.2_5'Flank	NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	522					actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						GGGGCCGCTTCCTCAGGACCC	0.572000													4	65					0	0	0.150653	0	0
PLA2R1	22925	broad.mit.edu	37	2	160808026	160808026	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:160808026C>T	uc002ube.1	-	24	3572	c.3365G>A	c.(3364-3366)GGA>GAA	p.G1122E	PLA2R1_uc010zcp.1_Missense_Mutation_p.G1122E|PLA2R1_uc002ubf.2_Missense_Mutation_p.G1122E	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	1122	Extracellular (Potential).|C-type lectin 7.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						AGTTCTGTTTCCATATTCTAA	0.378000													9	106					0	0	0.307466	0	0
SLC4A10	57282	broad.mit.edu	37	2	162751276	162751276	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:162751276C>T	uc002ubx.3	+	11	1466	c.1282C>T	c.(1282-1284)CCT>TCT	p.P428S	SLC4A10_uc010fpa.1_Missense_Mutation_p.P440S|SLC4A10_uc010zcr.1_RNA|SLC4A10_uc002uby.3_Missense_Mutation_p.P398S|SLC4A10_uc010zcs.1_Missense_Mutation_p.P409S	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	428	Cytoplasmic (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						TACTGTTCTCCCTCCTGGAGA	0.363000													8	70					0	0	0.278610	0	0
STK39	27347	broad.mit.edu	37	2	169020356	169020356	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:169020356G>A	uc002uea.2	-	4	625	c.465C>T	c.(463-465)AAC>AAT	p.N155N		NM_013233	NP_037365	Q9UEW8	STK39_HUMAN	serine threonine kinase 39 (STE20/SPS1 homolog,	155	Protein kinase.				response to stress	cytoplasm|nucleus	ATP binding|protein binding|receptor signaling protein serine/threonine kinase activity			central_nervous_system(1)|skin(1)	2						GTTCTCCTCGGTTGACAATGT	0.368000													5	40					0	0	0.217242	0	0
TTN	7273	broad.mit.edu	37	2	179412733	179412733	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:179412733T>C	uc010zfg.1	-	288	86140	c.85916A>G	c.(85915-85917)AAG>AGG	p.K28639R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.K22334R|TTN_uc010zfi.1_Missense_Mutation_p.K22267R|TTN_uc010zfj.1_Missense_Mutation_p.K22142R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	29566							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGAGGCTCCTTAATGATGAC	0.448000													8	95					0	0	0.278610	0	0
TTN	7273	broad.mit.edu	37	2	179584752	179584752	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:179584752C>T	uc010zfg.1	-	78	20109	c.19885G>A	c.(19885-19887)GAT>AAT	p.D6629N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D3290N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7556							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTCCAGCATCGTTTTTGATT	0.383000													5	30					0	0	0.217242	0	0
TTN	7273	broad.mit.edu	37	2	179604592	179604592	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:179604592G>A	uc010zfh.1	-	46	13079	c.12855C>T	c.(12853-12855)ACC>ACT	p.T4285T	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Silent_p.T4218T|TTN_uc010zfj.1_Silent_p.T4093T|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAATAATGATGGTTACTTCTT	0.408000													9	176					0	0	0.335167	0	0
ZNF385B	151126	broad.mit.edu	37	2	180634464	180634464	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:180634464G>A	uc002unn.3	-	3	623	c.19C>T	c.(19-21)CTA>TTA	p.L7L		NM_152520	NP_689733	Q569K4	Z385B_HUMAN	zinc finger protein 385B isoform 1	7						nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			Epithelial(96;0.174)|OV - Ovarian serous cystadenocarcinoma(117;0.201)			AAGCCCCGTAGAAAATTTGCC	0.408000													9	91					0	0	0.307466	0	0
COL3A1	1281	broad.mit.edu	37	2	189855763	189855763	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:189855763A>T	uc002uqj.1	+	11	949	c.832A>T	c.(832-834)ACA>TCA	p.T278S	COL3A1_uc010frw.1_5'Flank	NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	278	Triple-helical region.			T -> A (in Ref. 9; AA sequence).	axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	AAAGGGTGAAACAGGTGCTCC	0.294000													13	112					0	0	0.479597	0	0
COL3A1	1281	broad.mit.edu	37	2	189859549	189859549	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:189859549G>A	uc002uqj.1	+	20	1564	c.1447G>A	c.(1447-1449)GGA>AGA	p.G483R		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	483	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	AGGAGCTGCAGGAGAAAGGGT	0.483000													6	117					0	0	0.278610	0	0
SDPR	8436	broad.mit.edu	37	2	192700701	192700701	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:192700701G>A	uc002utb.2	-	2	1556	c.1226C>T	c.(1225-1227)TCC>TTC	p.S409F		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	409						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	GTCCCCATCGGAGCGCTCCGC	0.627000													14	97					0	0	0.479597	0	0
DNAH7	56171	broad.mit.edu	37	2	196741396	196741396	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:196741396C>T	uc002utj.3	-	37	6090	c.5989G>A	c.(5989-5991)GAA>AAA	p.E1997K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1997	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTGTAGATTTCCTTATTTAGT	0.303000													6	45					0	0	0.248553	0	0
DNAH7	56171	broad.mit.edu	37	2	196825573	196825573	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:196825573G>A	uc002utj.3	-	18	2403	c.2302C>T	c.(2302-2304)CGT>TGT	p.R768C		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	768	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCATAAAGACGAAGATAAGGG	0.403000													9	118					0	0	0.335167	0	0
HECW2	57520	broad.mit.edu	37	2	197090573	197090573	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:197090573G>A	uc002utm.1	-	23	4122	c.3939C>T	c.(3937-3939)ATC>ATT	p.I1313I	HECW2_uc002utl.1_Silent_p.I957I	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	1313	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						CAAGACCAAGGATCCTACCAC	0.423000													8	61					0	0	0.307466	0	0
ABCA12	26154	broad.mit.edu	37	2	215884074	215884074	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:215884074G>A	uc002vew.2	-	13	1863	c.1643C>T	c.(1642-1644)GCT>GTT	p.A548V	ABCA12_uc002vev.2_Missense_Mutation_p.A230V|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	548					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CTTTTCAGAAGCATCTGCACT	0.378000													8	63					0	0	0.335167	0	0
VIL1	7429	broad.mit.edu	37	2	219297672	219297672	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:219297672C>T	uc002via.2	+	13	1563	c.1498C>T	c.(1498-1500)CAG>TAG	p.Q500*	VIL1_uc010zke.1_Nonsense_Mutation_p.Q189*|VIL1_uc002vib.2_Nonsense_Mutation_p.Q500*	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	500	Core.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGTGGTCTACCAGGTGTGGCT	0.572000													10	71					0	0	0.361761	0	0
NHEJ1	79840	broad.mit.edu	37	2	219942832	219942832	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:219942832C>T	uc002vjp.3	-	6	831	c.685G>A	c.(685-687)GGA>AGA	p.G229R	NHEJ1_uc002vjq.3_RNA	NM_024782	NP_079058	Q9H9Q4	NHEJ1_HUMAN	nonhomologous end-joining factor 1	229					B cell differentiation|central nervous system development|DNA recombination|double-strand break repair via nonhomologous end joining|positive regulation of ligase activity|response to ionizing radiation|T cell differentiation	nonhomologous end joining complex|nucleus	DNA binding|identical protein binding			lung(1)	1		Renal(207;0.0915)		Epithelial(149;2.15e-06)|all cancers(144;0.000339)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(261;0.0112)		TGCTTCTGTCCCACTTGGACC	0.448000								Direct_reversal_of_damage|NHEJ					4	67					0	0	0.150653	0	0
FARSB	10056	broad.mit.edu	37	2	223504379	223504379	+	Silent	SNP	A	G	G			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:223504379A>G	uc002vne.1	-	5	410	c.375T>C	c.(373-375)GTT>GTC	p.V125V	FARSB_uc010zlq.1_Silent_p.V145V|FARSB_uc002vnf.1_Silent_p.V26V	NM_005687	NP_005678	Q9NSD9	SYFB_HUMAN	phenylalanyl-tRNA synthetase, beta subunit	125					phenylalanyl-tRNA aminoacylation	cytosol|soluble fraction	ATP binding|magnesium ion binding|phenylalanine-tRNA ligase activity|RNA binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(121;3.47e-10)|all cancers(144;1.86e-07)|LUSC - Lung squamous cell carcinoma(224;0.00871)|Lung(261;0.011)	L-Phenylalanine(DB00120)	TATTACGGAGAACTGCTGCTA	0.328000													10	56					0	0	0.387290	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883851	228883851	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:228883851C>T	uc002vpq.2	-	7	1766	c.1719G>A	c.(1717-1719)CTG>CTA	p.L573L	SPHKAP_uc002vpp.2_Silent_p.L573L|SPHKAP_uc010zlx.1_Silent_p.L573L	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	573						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CTCTTTCACCCAGACCACAGA	0.552000													20	192					0	0	0.575678	0	0
ALPP	250	broad.mit.edu	37	2	233243720	233243721	+	Missense_Mutation	DNP	CC	TT	TT	rs144266383		TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:233243720_233243721CC>TT	uc002vsq.2	+	2	281_282	c.116_117CC>TT	c.(115-117)GCC>GTT	p.A39V	ALPP_uc002vsr.2_5'Flank	NM_001632	NP_001623	P05187	PPB1_HUMAN	placental alkaline phosphatase preproprotein	39						anchored to membrane|cell surface|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)		CGCGAGGCAGCCGAGGCCCTGG	0.639000													14	134					0	0	0.115264	0	0
PER2	8864	broad.mit.edu	37	2	239179979	239179979	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:239179979G>A	uc002vyc.2	-	6	983	c.746C>T	c.(745-747)CCC>CTC	p.P249L	PER2_uc010znv.1_Missense_Mutation_p.P249L|PER2_uc010znw.1_Missense_Mutation_p.P249L|PER2_uc010fyx.1_Missense_Mutation_p.P249L	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	249					circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		GCTCCACAAGGGAAGCTTGTA	0.577000													10	192					0	0	0.435327	0	0
KIF1A	547	broad.mit.edu	37	2	241700646	241700646	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:241700646C>T	uc002vzy.2	-	23	2384	c.2238G>A	c.(2236-2238)AAG>AAA	p.K746K	KIF1A_uc010fzk.2_Silent_p.K755K|KIF1A_uc002vzz.1_Silent_p.K755K	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	746					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		GGCAGCCCACCTTCTTTTTCA	0.577000													9	212					0	0	0.335167	0	0
DEFB125	245938	broad.mit.edu	37	20	76798	76798	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr20:76798C>T	uc002wcw.2	+	2	211	c.211C>T	c.(211-213)CCT>TCT	p.P71S		NM_153325	NP_697020	Q8N687	DB125_HUMAN	defensin, beta 125 preproprotein	71					defense response to bacterium	extracellular region				ovary(1)|central_nervous_system(1)|skin(1)	3		all_cancers(10;7.65e-05)|Lung NSC(37;0.0417)|all_epithelial(17;0.0676)|all_lung(30;0.0713)|Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.156)			ACCAGCATTTCCTGTGATTCA	0.363000													11	194					0	0	0.387290	0	0
SIRPG	55423	broad.mit.edu	37	20	1629840	1629840	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr20:1629840C>T	uc002wfm.1	-	2	353	c.288G>A	c.(286-288)AAG>AAA	p.K96K	SIRPG_uc002wfn.1_Silent_p.K96K|SIRPG_uc002wfo.1_Silent_p.K96K	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	96	Extracellular (Potential).|Ig-like V-type.				blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						TGTTGTTTCTCTTTGTGAGGT	0.493000													33	182					0	0	0.769981	0	0
TMC2	117532	broad.mit.edu	37	20	2573013	2573013	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr20:2573013G>A	uc002wgf.1	+	8	907	c.892G>A	c.(892-894)GAA>AAA	p.E298K	TMC2_uc002wgg.1_Missense_Mutation_p.E282K|TMC2_uc010zpw.1_Missense_Mutation_p.E130K|TMC2_uc010zpx.1_Missense_Mutation_p.E129K	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	298	Extracellular (Potential).					integral to membrane				ovary(3)	3						TCGGGCTGAGGAAGAAAAGGC	0.428000													7	151					0	0	0.278610	0	0
CPXM1	56265	broad.mit.edu	37	20	2774958	2774958	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr20:2774958G>A	uc002wgu.2	-	14	2147	c.2083C>T	c.(2083-2085)CCC>TCC	p.P695S	CPXM1_uc010gas.2_Missense_Mutation_p.P621S	NM_019609	NP_062555	Q96SM3	CPXM1_HUMAN	carboxypeptidase X, member 1 precursor	695					cell adhesion|proteolysis		metallocarboxypeptidase activity|zinc ion binding			ovary(2)|skin(2)	4						AAATTGCAGGGGAAGGGGCCC	0.642000													8	91					0	0	0.335167	0	0
PLCB1	23236	broad.mit.edu	37	20	8665694	8665694	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr20:8665694C>T	uc002wnb.2	+	10	981	c.978C>T	c.(976-978)TTC>TTT	p.F326F	PLCB1_uc010zrb.1_Silent_p.F225F|PLCB1_uc002wna.2_Silent_p.F326F|PLCB1_uc002wnc.1_Silent_p.F225F	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	326	PI-PLC X-box.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						CTCACTATTTCATTAATTCCT	0.413000													36	186					0	0	0.796494	0	0
PLCB1	23236	broad.mit.edu	37	20	8862293	8862293	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr20:8862293T>C	uc002wnb.2	+	32	3451	c.3448T>C	c.(3448-3450)TAC>CAC	p.Y1150H	PLCB1_uc002wna.2_3'UTR	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	1150					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						GGAGCAAGAATACCAAGACAA	0.458000													9	258					0	0	0.361761	0	0
C20orf103	24141	broad.mit.edu	37	20	9496973	9496973	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr20:9496973C>T	uc002wni.1	+	4	669	c.440C>T	c.(439-441)TCC>TTC	p.S147F	C20orf103_uc010zrc.1_Missense_Mutation_p.S103F	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	147	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			GTCTACGACTCCTCGGAGAAA	0.577000													10	133					0	0	0.387290	0	0
SEL1L2	80343	broad.mit.edu	37	20	13867056	13867056	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr20:13867056G>A	uc010gcf.2	-	9	860	c.778C>T	c.(778-780)CCA>TCA	p.P260S	SEL1L2_uc002woq.3_Missense_Mutation_p.P121S|SEL1L2_uc010zrl.1_Missense_Mutation_p.P260S|SEL1L2_uc002wor.2_RNA	NM_025229	NP_079505	Q5TEA6	SE1L2_HUMAN	sel-1 suppressor of lin-12-like 2 precursor	260	Extracellular (Potential).					integral to membrane	binding			ovary(2)	2						TTTTCCACTGGAACACCTTCA	0.363000													5	50					0	0	0.184627	0	0
FLRT3	23767	broad.mit.edu	37	20	14307132	14307132	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr20:14307132G>A	uc002wov.1	-	3	1488	c.1021C>T	c.(1021-1023)CGT>TGT	p.R341C	MACROD2_uc002wot.2_Intron|MACROD2_uc002wou.2_Intron|FLRT3_uc002wow.1_Missense_Mutation_p.R341C	NM_198391	NP_938205	Q9NZU0	FLRT3_HUMAN	fibronectin leucine rich transmembrane protein 3	341	Extracellular (Potential).|LRRCT.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			kidney(1)	1		Colorectal(1;0.0464)	COAD - Colon adenocarcinoma(2;0.129)	Colorectal(1;0.0393)		GCCATCCCACGAACCTTTTCT	0.473000													14	175					0	0	0.479597	0	0
DTD1	92675	broad.mit.edu	37	20	18608809	18608809	+	Missense_Mutation	SNP	A	C	C			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr20:18608809A>C	uc002wrf.3	+	4	570	c.409A>C	c.(409-411)AAT>CAT	p.N137H		NM_080820	NP_543010	Q8TEA8	DTD1_HUMAN	D-tyrosyl-tRNA deacylase 1	137					D-amino acid catabolic process	cytoplasm	hydrolase activity, acting on ester bonds			ovary(2)	2						GCACATTCAGAATGATGGGCC	0.527000													6	113					0	0	0.248553	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20453564	20453564	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr20:20453564C>T	uc002wrz.2	-	37	5547	c.5404G>A	c.(5404-5406)GTG>ATG	p.V1802M	RALGAPA2_uc010gcx.2_Missense_Mutation_p.V1506M|RALGAPA2_uc010zsg.1_Missense_Mutation_p.V1250M|RALGAPA2_uc002wsa.1_Missense_Mutation_p.V574M	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	1802	Rap-GAP.				activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						TTCCCACTCACTATGGCTCCA	0.428000													6	65					0	0	0.278610	0	0
TM9SF4	9777	broad.mit.edu	37	20	30749159	30749159	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr20:30749159C>T	uc002wxj.2	+	17	2005	c.1770C>T	c.(1768-1770)TTC>TTT	p.F590F	TM9SF4_uc010zts.1_Silent_p.F497F|TM9SF4_uc002wxk.2_Silent_p.F573F|TM9SF4_uc010gdz.2_Silent_p.F469F	NM_014742	NP_055557	Q92544	TM9S4_HUMAN	transmembrane 9 superfamily protein member 4	590	Helical; (Potential).					integral to membrane				central_nervous_system(1)|pancreas(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			TCTTTTATTTCGTTAACAAGG	0.502000													4	68					0	0	0.150653	0	0
BPIL3	128859	broad.mit.edu	37	20	31631125	31631126	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr20:31631125_31631126GG>AA	uc010zuc.1	+	14	1281_1282	c.1281_1282GG>AA	c.(1279-1284)CCGGAC>CCAAAC	p.D428N	BPIL3_uc010zud.1_Missense_Mutation_p.D367N	NM_174897	NP_777557	Q8NFQ5	BPIL3_HUMAN	bactericidal/permeability-increasing	428						extracellular region	lipid binding			ovary(1)|pancreas(1)	2						TCCCACTCCCGGACTTTCTGGC	0.525000													8	103					0	0	0.115264	0	0
C20orf185	359710	broad.mit.edu	37	20	31652327	31652327	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr20:31652327C>T	uc002wym.1	+	7	717	c.717C>T	c.(715-717)TCC>TCT	p.S239S		NM_182658	NP_872599	P59826	LPLC3_HUMAN	antimicrobial peptide RYA3 precursor	239					innate immune response	cytoplasm|extracellular region	lipid binding|protein binding			ovary(4)	4						CTCTCATCTCCAACCAGTACA	0.582000													13	64					0	0	0.435327	0	0
PLUNC	51297	broad.mit.edu	37	20	31827627	31827627	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr20:31827627C>T	uc002wyv.2	+	4	409	c.339C>T	c.(337-339)CCC>CCT	p.P113P	PLUNC_uc002wyt.3_Silent_p.P113P|PLUNC_uc002wyu.3_Silent_p.P113P	NM_130852	NP_570913	Q9NP55	PLUNC_HUMAN	palate, lung and nasal epithelium associated	113					innate immune response	extracellular region	lipid binding				0						TCACTGACCCCCAGCTGCTGG	0.517000													19	376					0	0	0.592651	0	0
PTPRT	11122	broad.mit.edu	37	20	40790158	40790158	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr20:40790158G>A	uc002xkg.2	-	17	2700	c.2516C>T	c.(2515-2517)TCC>TTC	p.S839F	PTPRT_uc010ggj.2_Missense_Mutation_p.S858F|PTPRT_uc010ggi.2_Missense_Mutation_p.S42F	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	839	Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GGTGGGCTGGGAAAGCTCCCC	0.597000													21	92					0	0	0.608945	0	0
RBPJL	11317	broad.mit.edu	37	20	43938288	43938288	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr20:43938288C>T	uc002xns.2	+	3	285	c.213C>T	c.(211-213)ATC>ATT	p.I71I	MATN4_uc002xnn.2_5'Flank|MATN4_uc002xno.2_5'Flank|MATN4_uc002xnp.2_5'Flank|MATN4_uc002xnr.1_5'Flank|RBPJL_uc002xnt.2_Silent_p.I71I	NM_014276	NP_055091	Q9UBG7	RBPJL_HUMAN	recombining binding protein L	71					signal transduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				CTGTGCGGATCCTGCATGCCA	0.607000													6	61					0	0	0.278610	0	0
FAM65C	140876	broad.mit.edu	37	20	49218716	49218716	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr20:49218716C>T	uc002xvm.2	-	13	1858	c.1540G>A	c.(1540-1542)GAG>AAG	p.E514K	FAM65C_uc010zyt.1_Missense_Mutation_p.E518K|FAM65C_uc010zyu.1_RNA|FAM65C_uc002xvn.1_Missense_Mutation_p.E514K	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	514										ovary(2)	2						AGAGGCCCCTCGAGGGCCACG	0.697000													8	35					0	0	0.278610	0	0
RPS21	6227	broad.mit.edu	37	20	60962424	60962424	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr20:60962424C>T	uc002ycr.2	+	2	120	c.30C>T	c.(28-30)GAC>GAT	p.D10D	RPS21_uc002ycs.2_Silent_p.D10D|RPS21_uc002yct.2_Silent_p.D10D|RPS21_uc002ycu.2_Silent_p.D10D	NM_001024	NP_001015	P63220	RS21_HUMAN	ribosomal protein S21	10					endocrine pancreas development|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	protein N-terminus binding|structural constituent of ribosome				0	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)			AGTTCGTGGACCTGTACGTGC	0.682000													3	14					0	0	0.150653	0	0
CABLES2	81928	broad.mit.edu	37	20	60966461	60966461	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr20:60966461G>A	uc002ycv.2	-	9	1147	c.1140C>T	c.(1138-1140)CCC>CCT	p.P380P		NM_031215	NP_112492	Q9BTV7	CABL2_HUMAN	Cdk5 and Abl enzyme substrate 2	380					cell cycle|cell division|regulation of cell cycle|regulation of cell division		cyclin-dependent protein kinase regulator activity			pancreas(1)	1	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)			CCACCGTCACGGGCTCCAGGC	0.632000													20	294					0	0	0.575678	0	0
DIDO1	11083	broad.mit.edu	37	20	61524251	61524251	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr20:61524251G>A	uc002ydr.1	-	13	3429	c.3165C>T	c.(3163-3165)ACC>ACT	p.T1055T	DIDO1_uc002yds.1_Silent_p.T1055T|DIDO1_uc002ydt.1_Silent_p.T1055T|DIDO1_uc002ydu.1_Silent_p.T1055T	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1055					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					CTTTCCAAATGGTGCTGAGTC	0.423000													14	79					0	0	0.435327	0	0
PRIC285	85441	broad.mit.edu	37	20	62191389	62191389	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr20:62191389C>T	uc002yfm.2	-	19	8609	c.7717G>A	c.(7717-7719)GAC>AAC	p.D2573N	PRIC285_uc002yfl.1_Missense_Mutation_p.D2004N	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	2573					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			GGCCGCTGGTCCAGGTCGCTC	0.662000													5	45					0	0	0.184627	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19653413	19653413	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr21:19653413C>T	uc002ykw.2	-	22	2643	c.2612G>A	c.(2611-2613)CGA>CAA	p.R871Q		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	871	Extracellular (Potential).|Peptidase S1.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						GTCCTTTCTTCGCCTATTGTA	0.363000													12	159					0	0	0.435327	0	0
KRTAP24-1	643803	broad.mit.edu	37	21	31655059	31655060	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr21:31655059_31655060GG>AA	uc002ynv.2	-	1	217_218	c.191_192CC>TT	c.(190-192)TCC>TTT	p.S64F		NM_001085455	NP_001078924	Q3LI83	KR241_HUMAN	keratin associated protein 24-1	64						keratin filament	structural molecule activity				0						CTTCACCGTAGGATTCTTGGCA	0.520000													12	125					0	0	0.115264	0	0
KCNE1	3753	broad.mit.edu	37	21	35821548	35821548	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr21:35821548G>A	uc010gmp.2	-	2	815	c.385C>T	c.(385-387)CCA>TCA	p.P129S	KCNE1_uc002ytz.2_Missense_Mutation_p.P129S|KCNE1_uc010gmq.2_Missense_Mutation_p.P129S|KCNE1_uc010gmr.2_Missense_Mutation_p.P129S|KCNE1_uc010gms.2_Missense_Mutation_p.P129S|KCNE1_uc002yua.2_RNA	NM_001127670	NP_001121142	P15382	KCNE1_HUMAN	potassium voltage-gated channel, Isk-related	129	Cytoplasmic (Potential).				blood circulation|membrane depolarization|muscle contraction|sensory perception of sound	lysosome	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(2)	2					Indapamide(DB00808)	GGGGTTCATGGGGAAGGCTTC	0.507000													28	255					0	0	0.729181	0	0
DSCAM	1826	broad.mit.edu	37	21	41450730	41450730	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr21:41450730G>A	uc002yyq.1	-	26	5047	c.4595C>T	c.(4594-4596)TCC>TTC	p.S1532F	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1532	Extracellular (Potential).|Fibronectin type-III 6.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CAGGATGTAGGACTTGGAGAG	0.582000													4	43					0	0	0.150653	0	0
ZNF295	49854	broad.mit.edu	37	21	43411620	43411620	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr21:43411620G>A	uc002zab.3	-	3	2799	c.2585C>T	c.(2584-2586)TCT>TTT	p.S862F	ZNF295_uc002yzz.3_Missense_Mutation_p.S661F|ZNF295_uc002yzy.3_Missense_Mutation_p.S862F|ZNF295_uc002zaa.3_Missense_Mutation_p.S862F	NM_001098402	NP_001091872	Q9ULJ3	ZN295_HUMAN	zinc finger protein 295 isoform L	862					negative regulation of transcription, DNA-dependent|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|nucleus	methyl-CpG binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GGGAAGACAAGAGGAATCTTC	0.488000													11	189					0	0	0.361761	0	0
BCR	613	broad.mit.edu	37	22	23523587	23523587	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr22:23523587C>T	uc002zww.2	+	1	1036	c.440C>T	c.(439-441)CCC>CTC	p.P147L	BCR_uc002zwx.2_Missense_Mutation_p.P147L	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	147	Kinase.				regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						GACCGGGGACCCCCCGCCAGC	0.761000			T	ABL1| FGFR1|JAK2 	CML|ALL|AML								5	57					0	0	0.184627	0	0
CABIN1	23523	broad.mit.edu	37	22	24466778	24466778	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr22:24466778C>T	uc002zzi.1	+	17	2387	c.2260C>T	c.(2260-2262)CGG>TGG	p.R754W	CABIN1_uc002zzj.1_Missense_Mutation_p.R704W|CABIN1_uc002zzl.1_Missense_Mutation_p.R754W	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	754					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						GAAGGACTATCGGCAGTGTTT	0.582000													13	152					0	0	0.457914	0	0
RFPL3	10738	broad.mit.edu	37	22	32756547	32756547	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr22:32756547G>A	uc003amj.2	+	2	887	c.682G>A	c.(682-684)GCC>ACC	p.A228T	RFPL3_uc010gwn.2_Missense_Mutation_p.A199T|RFPL3S_uc003amk.2_RNA|RFPL3S_uc003aml.2_RNA	NM_001098535	NP_001092005	O75679	RFPL3_HUMAN	ret finger protein-like 3 isoform 1	228	B30.2/SPRY.						zinc ion binding			ovary(1)	1						CCGCCTCTCTGCCAGCACGGT	0.517000													24	154					0	0	0.639603	0	0
ISX	91464	broad.mit.edu	37	22	35481510	35481510	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr22:35481510G>A	uc003anj.2	+	4	1513	c.562G>A	c.(562-564)GCT>ACT	p.A188T	ISX_uc011amg.1_Missense_Mutation_p.A176T	NM_001008494	NP_001008494	Q2M1V0	ISX_HUMAN	intestine-specific homeobox	188						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)	5						TTGTCCATCGGCTCAAGATCA	0.617000													18	208					0	0	0.539581	0	0
DDX17	10521	broad.mit.edu	37	22	38894457	38894457	+	Silent	SNP	C	T	T	rs148438451		TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr22:38894457C>T	uc003avy.3	-	4	763	c.660G>A	c.(658-660)GGG>GGA	p.G220G	DDX17_uc003avx.3_Silent_p.G220G|DDX17_uc011anu.1_Silent_p.G133G	NM_001098504	NP_001091974	Q92841	DDX17_HUMAN	DEAD box polypeptide 17 isoform 3	141	ATP (By similarity).|Helicase ATP-binding.				RNA processing	nucleus	ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity|RNA-dependent ATPase activity			skin(3)|upper_aerodigestive_tract(1)	4	Melanoma(58;0.0286)					CCAACGTCTTCCCAGAGCCAG	0.458000													14	122					0	0	0.457914	0	0
SMC1B	27127	broad.mit.edu	37	22	45767374	45767374	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr22:45767374C>T	uc003bgc.2	-	14	2342	c.2290G>A	c.(2290-2292)GAA>AAA	p.E764K	SMC1B_uc003bgd.2_Missense_Mutation_p.E764K|SMC1B_uc003bge.1_Missense_Mutation_p.E547K	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	764	Potential.				chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		TCTTGAAATTCTTTAATTCTT	0.294000													5	43					0	0	0.184627	0	0
GRM7	2917	broad.mit.edu	37	3	7348285	7348285	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:7348285G>A	uc003bqm.2	+	4	1253	c.979G>A	c.(979-981)GAA>AAA	p.E327K	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.E327K|GRM7_uc003bql.2_Missense_Mutation_p.E327K|GRM7_uc003bqn.1_5'UTR	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	327	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	GCACCAGCATGAAGATATCGC	0.522000													12	113					0	0	0.457914	0	0
EFHB	151651	broad.mit.edu	37	3	19947234	19947234	+	Silent	SNP	T	C	C			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:19947234T>C	uc003cbl.3	-	6	1492	c.1296A>G	c.(1294-1296)GCA>GCG	p.A432A	EFHB_uc003cbm.2_Silent_p.A302A	NM_144715	NP_653316	Q8N7U6	EFHB_HUMAN	EF hand domain family, member B	432					signal transduction	proteinaceous extracellular matrix	calcium ion binding				0						TTCGGTTCTTTGCCTCTCCTG	0.388000													10	56					0	0	0.335167	0	0
ZNF385D	79750	broad.mit.edu	37	3	21467126	21467126	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:21467126C>T	uc003cce.2	-	6	1118	c.710G>A	c.(709-711)GGA>GAA	p.G237E		NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	237						nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						AGTGCCACTTCCATTCCGGGC	0.328000													8	70					0	0	0.307466	0	0
LRRC3B	116135	broad.mit.edu	37	3	26751407	26751407	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:26751407G>A	uc003cdp.2	+	2	833	c.244G>A	c.(244-246)GAA>AAA	p.E82K	LRRC3B_uc003cdq.2_Missense_Mutation_p.E82K	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	82	LRR 1.					integral to membrane				pancreas(2)|ovary(1)|skin(1)	4						TATTCCCAATGAAATTTTTAA	0.408000													5	60					0	0	0.217242	0	0
NEK10	152110	broad.mit.edu	37	3	27233714	27233714	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:27233714C>T	uc010hfk.2	-	5	476	c.247G>A	c.(247-249)GAA>AAA	p.E83K	NEK10_uc003cds.1_Missense_Mutation_p.E168K|NEK10_uc010hfj.2_Missense_Mutation_p.E83K			Q6ZWH5	NEK10_HUMAN	RecName: Full=Serine/threonine-protein kinase Nek10;          EC=2.7.11.1; AltName: Full=NimA-related protein kinase 10;	771							ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(5)|stomach(2)|central_nervous_system(2)|lung(2)|skin(1)|pancreas(1)	13						GGACGAGCTTCCGCATCAGGA	0.408000													7	74					0	0	0.248553	0	0
ZNF860	344787	broad.mit.edu	37	3	32031024	32031024	+	Silent	SNP	C	T	T	rs4449357	by1000genomes	TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:32031024C>T	uc011axg.1	+	2	1002	c.453C>T	c.(451-453)ATC>ATT	p.I151I		NM_001137674	NP_001131146	A6NHJ4	ZN860_HUMAN	zinc finger protein 860	151					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ACAAGCCTATCAAAGATCAGC	0.398000													6	109					0	0	0.217242	0	0
FYCO1	79443	broad.mit.edu	37	3	46009500	46009500	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:46009500C>T	uc003cpb.3	-	8	1532	c.1326G>A	c.(1324-1326)CGG>CGA	p.R442R	FYCO1_uc011bal.1_Silent_p.R442R	NM_024513	NP_078789	Q9BQS8	FYCO1_HUMAN	FYVE and coiled-coil domain containing 1	442	Potential.				transport	integral to membrane	metal ion binding|protein binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00147)|KIRC - Kidney renal clear cell carcinoma(197;0.0272)|Kidney(197;0.0323)		CCAGGCTGGCCCGGGCATCCT	0.612000													29	391					0	0	0.779181	0	0
LTF	4057	broad.mit.edu	37	3	46497366	46497366	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:46497366C>T	uc003cpq.2	-	4	457	c.419G>A	c.(418-420)AGG>AAG	p.R140K	LTF_uc003fzr.2_Missense_Mutation_p.R96K|LTF_uc010hjh.2_Missense_Mutation_p.R140K|LTF_uc003cpr.2_Missense_Mutation_p.R127K	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	140	Transferrin-like 1.	Carbonate 1.		Missing (in Ref. 13; AA sequence).	cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	TCCAGCGGTCCTGCGAAGGCC	0.557000													11	77					0	0	0.361761	0	0
COL7A1	1294	broad.mit.edu	37	3	48612255	48612255	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:48612255C>T	uc003ctz.2	-	76	6324	c.6323G>A	c.(6322-6324)GGA>GAA	p.G2108E		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2108	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TCCAGGGGGTCCCTGTTCTCC	0.572000													4	62					0	0	0.150653	0	0
HEMK1	51409	broad.mit.edu	37	3	50617645	50617645	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:50617645G>A	uc003dau.2	+	10	1261	c.965G>A	c.(964-966)AGG>AAG	p.R322K	HEMK1_uc003dav.2_Missense_Mutation_p.R322K|HEMK1_uc003daw.2_Missense_Mutation_p.R322K	NM_016173	NP_057257	Q9Y5R4	HEMK1_HUMAN	HemK methyltransferase family member 1	322					DNA methylation		DNA binding|N-methyltransferase activity|protein methyltransferase activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000283)|KIRC - Kidney renal clear cell carcinoma(197;0.0179)|Kidney(197;0.0212)		GCTGTGCGCAGGGACTTCTGT	0.572000													10	90					0	0	0.361761	0	0
MAPKAPK3	7867	broad.mit.edu	37	3	50683641	50683641	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:50683641C>T	uc003day.1	+	10	1371	c.775C>T	c.(775-777)CGC>TGC	p.R259C	MAPKAPK3_uc003daz.1_Missense_Mutation_p.R259C|MAPKAPK3_uc003dba.1_Missense_Mutation_p.R259C|MAPKAPK3_uc010hlr.1_Missense_Mutation_p.R259C	NM_004635	NP_004626	Q16644	MAPK3_HUMAN	mitogen-activated protein kinase-activated	259	Protein kinase.				activation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.0188)|Kidney(197;0.0223)		GAGGAGGATTCGCCTGGGCCA	0.602000													11	258					0	0	0.435327	0	0
TNNC1	7134	broad.mit.edu	37	3	52486252	52486252	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:52486252G>A	uc003deb.2	-	3	98	c.72C>T	c.(70-72)TTC>TTT	p.F24F	NISCH_uc011beg.1_5'Flank	NM_003280	NP_003271	P63316	TNNC1_HUMAN	troponin C, slow	24	EF-hand 1.				cardiac muscle contraction|muscle filament sliding|regulation of ATPase activity|regulation of muscle filament sliding speed|ventricular cardiac muscle tissue morphogenesis	cytosol|troponin complex	actin filament binding|calcium ion binding|calcium-dependent protein binding|protein homodimerization activity|troponin I binding|troponin T binding				0				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00175)|KIRC - Kidney renal clear cell carcinoma(197;0.00198)|OV - Ovarian serous cystadenocarcinoma(275;0.0525)	Bepridil(DB01244)|Dihydroxyaluminium(DB01375)|Levosimendan(DB00922)	CGAAGATGTCGAAGGCTGCCT	0.637000													11	141					0	0	0.361761	0	0
CACNA1D	776	broad.mit.edu	37	3	53756425	53756425	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:53756425C>T	uc003dgv.3	+	12	1753	c.1590C>T	c.(1588-1590)ATC>ATT	p.I530I	CACNA1D_uc003dgu.3_Silent_p.I550I|CACNA1D_uc003dgy.3_Silent_p.I530I|CACNA1D_uc003dgw.3_Silent_p.I197I	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	530	Helical; Name=S1 of repeat II; (Potential).|II.				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	GGCTGGTTATCGTCCTGGTGT	0.488000													7	93					0	0	0.248553	0	0
GPR128	84873	broad.mit.edu	37	3	100352132	100352132	+	Silent	SNP	T	C	C			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:100352132T>C	uc003duc.2	+	4	626	c.358T>C	c.(358-360)TTG>CTG	p.L120L	GPR128_uc011bhc.1_5'Flank	NM_032787	NP_116176	Q96K78	GP128_HUMAN	G protein-coupled receptor 128 precursor	120	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(1)	4						GGCAGTCCGGTTGTGCAGTCT	0.274000													4	51					0	0	0.150653	0	0
DRD3	1814	broad.mit.edu	37	3	113850136	113850136	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:113850136C>T	uc003ebd.2	-	7	1258	c.835G>A	c.(835-837)GAG>AAG	p.E279K	DRD3_uc010hqn.1_Missense_Mutation_p.E279K|DRD3_uc003ebb.1_Missense_Mutation_p.E279K|DRD3_uc003ebc.1_Missense_Mutation_p.E279K	NM_000796	NP_000787	P35462	DRD3_HUMAN	dopamine receptor D3 isoform a	279	Cytoplasmic.				activation of adenylate cyclase activity by dopamine receptor signaling pathway|arachidonic acid secretion|behavioral response to cocaine|cellular calcium ion homeostasis|circadian regulation of gene expression|G-protein coupled receptor internalization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|locomotory behavior|musculoskeletal movement, spinal reflex action|negative regulation of blood pressure|negative regulation of oligodendrocyte differentiation|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|positive regulation of dopamine receptor signaling pathway|positive regulation of mitosis|prepulse inhibition|regulation of dopamine secretion|response to drug|response to histamine|response to morphine|social behavior|visual learning	integral to plasma membrane	dopamine D3 receptor activity|drug binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4					Apomorphine(DB00714)|Chlorprothixene(DB01239)|Cocaine(DB00907)|Methotrimeprazine(DB01403)|Olanzapine(DB00334)|Pramipexole(DB00413)|Ropinirole(DB00268)|Ziprasidone(DB00246)	GTCTTCTCCTCTCTTTTCAAC	0.512000													27	205					0	0	0.693898	0	0
TIGIT	201633	broad.mit.edu	37	3	114014438	114014438	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:114014438G>A	uc003ebg.1	+	2	142	c.108G>A	c.(106-108)GAG>GAA	p.E36E		NM_173799	NP_776160	Q495A1	TIGIT_HUMAN	T cell immunoreceptor with Ig and ITIM domains	36	Extracellular (Potential).|Ig-like V-type.				negative regulation of interleukin-12 production|negative regulation of T cell activation|positive regulation of interleukin-10 production	cell surface|integral to membrane|plasma membrane	protein binding			central_nervous_system(1)	1						TTTCTGCAGAGAAAGGTGGCT	0.522000													12	262					0	0	0.411799	0	0
KTELC1	56983	broad.mit.edu	37	3	119190166	119190166	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:119190166G>A	uc003ecm.2	+	3	271	c.187G>A	c.(187-189)GAG>AAG	p.E63K	KTELC1_uc011biz.1_RNA|KTELC1_uc011bja.1_5'UTR	NM_152305	NP_689518	Q8NBL1	PGLT1_HUMAN	KTEL (Lys-Tyr-Glu-Leu) containing 1 precursor	63						endoplasmic reticulum lumen	UDP-glucosyltransferase activity				0				GBM - Glioblastoma multiforme(114;0.233)		TGTCATAGAAGAGGATCTAAC	0.478000													16	316					0	0	0.539581	0	0
POLQ	10721	broad.mit.edu	37	3	121203990	121203990	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:121203990G>A	uc003eee.3	-	17	5800	c.5671C>T	c.(5671-5673)CCC>TCC	p.P1891S	POLQ_uc003eed.2_Missense_Mutation_p.P1063S	NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	1891					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		CCTTTAATGGGAAATCCATCA	0.373000								DNA_polymerases_(catalytic_subunits)					13	88					0	0	0.411799	0	0
MYLK	4638	broad.mit.edu	37	3	123452616	123452616	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:123452616C>T	uc003ego.2	-	10	1509	c.1227G>A	c.(1225-1227)AGG>AGA	p.R409R	MYLK_uc011bjw.1_Silent_p.R409R|MYLK_uc003egp.2_Silent_p.R409R|MYLK_uc003egq.2_Silent_p.R409R|MYLK_uc003egr.2_Silent_p.R409R|MYLK_uc003egs.2_Silent_p.R233R	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	409					aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		ATGCTGAATCCCTCTGGCCCT	0.542000													8	159					0	0	0.335167	0	0
TRPC1	7220	broad.mit.edu	37	3	142521128	142521128	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:142521128G>A	uc003evc.2	+	10	1835	c.1699G>A	c.(1699-1701)GAG>AAG	p.E567K	TRPC1_uc003evb.2_Missense_Mutation_p.E533K|TRPC1_uc011bni.1_Missense_Mutation_p.E86K	NM_003304	NP_003295	P48995	TRPC1_HUMAN	transient receptor potential cation channel,	567	Cytoplasmic (Potential).				axon guidance|cytosolic calcium ion homeostasis|positive regulation of release of sequestered calcium ion into cytosol|response to calcium ion	cytosol|integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						TACTTCAAAGGAGCAGAAGGA	0.328000													4	41					0	0	0.150653	0	0
GYG1	2992	broad.mit.edu	37	3	148714596	148714596	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:148714596C>T	uc003ewn.2	+	4	439	c.386C>T	c.(385-387)CCT>CTT	p.P129L	GYG1_uc011bnp.1_Missense_Mutation_p.P129L|GYG1_uc003ewo.2_Missense_Mutation_p.P129L|GYG1_uc003ewp.2_Missense_Mutation_p.P129L	NM_004130	NP_004121	P46976	GLYG_HUMAN	glycogenin 1	129					glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	glycogenin glucosyltransferase activity|metal ion binding|protein binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			CCAGGGTGGCCTGACTGCTTC	0.433000													5	102					0	0	0.217242	0	0
CLDN11	5010	broad.mit.edu	37	3	170140979	170140979	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:170140979G>A	uc003fgx.2	+	2	457	c.255G>A	c.(253-255)ATG>ATA	p.M85I	CLDN11_uc011bpt.1_Missense_Mutation_p.M85I|CLDN11_uc003fgy.2_Missense_Mutation_p.M1I	NM_005602	NP_005593	O75508	CLD11_HUMAN	claudin 11	85	Helical; (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity			central_nervous_system(1)	1	all_cancers(22;5.62e-23)|all_epithelial(15;7.54e-28)|all_lung(20;2.51e-17)|Lung NSC(18;1.02e-16)|Ovarian(172;0.000567)|Breast(254;0.137)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			GCGCCCTGATGATTGCTGCCT	0.607000													17	289					0	0	0.592651	0	0
SLC7A14	57709	broad.mit.edu	37	3	170204061	170204061	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:170204061G>A	uc003fgz.2	-	5	1172	c.856C>T	c.(856-858)CCT>TCT	p.P286S	CLDN11_uc011bpt.1_Intron|uc003fha.1_Intron	NM_020949	NP_066000	Q8TBB6	S7A14_HUMAN	solute carrier family 7 (cationic amino acid	286						integral to membrane	amino acid transmembrane transporter activity			ovary(2)|upper_aerodigestive_tract(1)|liver(1)|central_nervous_system(1)	5	all_cancers(22;2.41e-22)|all_epithelial(15;4.2e-27)|all_lung(20;1.17e-16)|Lung NSC(18;4.91e-16)|Ovarian(172;0.000902)|Breast(254;0.137)		Lung(28;6.23e-13)|LUSC - Lung squamous cell carcinoma(14;1.48e-12)			ATAGCATAAGGGATGGACGTG	0.537000													7	82					0	0	0.248553	0	0
TRA2B	6434	broad.mit.edu	37	3	185643322	185643322	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:185643322C>T	uc003fpv.2	-	3	539	c.263G>A	c.(262-264)CGA>CAA	p.R88Q	TRA2B_uc003fpt.2_5'Flank|TRA2B_uc003fpu.2_RNA|TRA2B_uc010hym.2_5'UTR|TRA2B_uc003fpw.2_Missense_Mutation_p.R88Q	NM_004593	NP_004584	P62995	TRA2B_HUMAN	splicing factor, arginine/serine-rich 10	88	Arg/Ser-rich (RS1 domain).				nuclear mRNA splicing, via spliceosome	nucleus	nucleotide binding|protein binding|RNA binding			ovary(2)	2						ACGATAATCTCGACTGTAAGA	0.522000													5	111					0	0	0.184627	0	0
DGKG	1608	broad.mit.edu	37	3	185975716	185975716	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:185975716G>A	uc003fqa.2	-	17	1974	c.1437C>T	c.(1435-1437)TTC>TTT	p.F479F	DGKG_uc003fqb.2_Silent_p.F440F|DGKG_uc003fqc.2_Silent_p.F454F|DGKG_uc011brx.1_Silent_p.F420F	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	479	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	GAGTATCACGGAAAAAGTTCA	0.493000													7	67					0	0	0.248553	0	0
TP63	8626	broad.mit.edu	37	3	189526279	189526280	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:189526279_189526280CC>TT	uc003fry.2	+	4	632_633	c.543_544CC>TT	c.(541-546)TTCCAG>TTTTAG	p.Q182*	TP63_uc003frx.2_Nonsense_Mutation_p.Q182*|TP63_uc003frz.2_Nonsense_Mutation_p.Q182*|TP63_uc010hzc.1_Nonsense_Mutation_p.Q182*|TP63_uc003fsa.2_Nonsense_Mutation_p.Q88*|TP63_uc003fsb.2_Nonsense_Mutation_p.Q88*|TP63_uc003fsc.2_Nonsense_Mutation_p.Q88*|TP63_uc003fsd.2_Nonsense_Mutation_p.Q88*|TP63_uc010hzd.1_Intron|TP63_uc003fse.1_Nonsense_Mutation_p.Q63*	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	182					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		ACGTGTCCTTCCAGCAGTCGAG	0.634000									Hay-Wells_syndrome	HNSCC(45;0.13)			10	109					0	0	0.115264	0	0
MUC4	4585	broad.mit.edu	37	3	195505256	195505256	+	Silent	SNP	G	A	A	rs140469862		TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:195505256G>A	uc011bto.1	-	4	12937	c.12477C>T	c.(12475-12477)TCC>TCT	p.S4159S	MUC4_uc003fva.2_5'UTR|MUC4_uc003fvb.2_5'UTR|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_5'UTR|MUC4_uc010hzr.2_RNA|MUC4_uc011btf.1_5'UTR|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_5'UTR|MUC4_uc011bti.1_5'UTR|MUC4_uc011btj.1_Silent_p.S28S|MUC4_uc011btk.1_5'UTR|MUC4_uc011btl.1_5'UTR|MUC4_uc011btm.1_Silent_p.S28S|MUC4_uc011btn.1_5'UTR|MUC4_uc003fvo.2_Silent_p.S51S|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Silent_p.S899S	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1044					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		TGATGGTCTGGGAGGTTGTGG	0.592000													5	78					0	0	0.248553	0	0
MUC4	4585	broad.mit.edu	37	3	195505836	195505836	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr3:195505836G>C	uc011bto.1	-	3	12691	c.12231C>G	c.(12229-12231)CAC>CAG	p.H4077Q	MUC4_uc003fva.2_5'Flank|MUC4_uc003fvb.2_5'Flank|MUC4_uc003fvc.2_5'Flank|MUC4_uc003fvd.2_5'Flank|MUC4_uc003fve.2_5'Flank|MUC4_uc010hzr.2_5'Flank|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GAGGGGTGGCGTGACCTGTGG	0.597000													5	2					0	0	0.184627	0	0
AFAP1	60312	broad.mit.edu	37	4	7844984	7844984	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:7844984G>A	uc003gkg.1	-	5	701	c.428C>T	c.(427-429)TCC>TTC	p.S143F	AFAP1_uc011bwk.1_Missense_Mutation_p.S143F	NM_198595	NP_940997	Q8N556	AFAP1_HUMAN	actin filament associated protein 1	143						actin cytoskeleton|cytoplasm|focal adhesion	actin binding				0						GGCCTCCTCGGAGGGCCACTG	0.557000													5	82					0	0	0.217242	0	0
C4orf23	152992	broad.mit.edu	37	4	8465751	8465751	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:8465751G>T	uc003glg.1	+	7	744	c.556G>T	c.(556-558)GAT>TAT	p.D186Y	C4orf23_uc003glf.1_Missense_Mutation_p.D174Y|C4orf23_uc003glh.1_Missense_Mutation_p.D23Y	NM_152544	NP_689757	Q8IYL2	TRM44_HUMAN	hypothetical protein LOC152992 isoform 2	415					tRNA processing	cytoplasm	methyltransferase activity|nucleic acid binding|zinc ion binding				0						CCTTTTCCCTGATGTTGATTG	0.423000													18	187					8.00594e-06	8.03479e-06	0.557998	1	0
C4orf23	152992	broad.mit.edu	37	4	8469765	8469765	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:8469765C>T	uc003glg.1	+	9	1120	c.932C>T	c.(931-933)TCC>TTC	p.S311F	C4orf23_uc003glf.1_Missense_Mutation_p.S299F|C4orf23_uc003glh.1_Missense_Mutation_p.S148F	NM_152544	NP_689757	Q8IYL2	TRM44_HUMAN	hypothetical protein LOC152992 isoform 2	540					tRNA processing	cytoplasm	methyltransferase activity|nucleic acid binding|zinc ion binding				0						TGGGAGCTTTCCCCTTCTCCA	0.607000													7	69					0	0	0.248553	0	0
CPZ	8532	broad.mit.edu	37	4	8620195	8620195	+	Missense_Mutation	SNP	G	A	A	rs138232433		TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:8620195G>A	uc003glm.2	+	10	1669	c.1543G>A	c.(1543-1545)GGC>AGC	p.G515S	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_Missense_Mutation_p.G378S|CPZ_uc003glo.2_Missense_Mutation_p.G504S|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	515					proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						AGATAAATTCGGCAAGCCAGT	0.607000													6	48					0	0	0.307466	0	0
SLIT2	9353	broad.mit.edu	37	4	20569182	20569182	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:20569182C>T	uc003gpr.1	+	28	3096	c.2892C>T	c.(2890-2892)AAC>AAT	p.N964N	SLIT2_uc003gps.1_Silent_p.N956N	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	964	EGF-like 2.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						GCATCAGTAACCCATGTAAAC	0.458000													5	64					0	0	0.248553	0	0
SEL1L3	23231	broad.mit.edu	37	4	25792133	25792133	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:25792133C>T	uc003gru.3	-	12	2172	c.2020G>A	c.(2020-2022)GGA>AGA	p.G674R	SEL1L3_uc003grv.2_Missense_Mutation_p.G81R	NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	674						integral to membrane	binding				0						AAGACATCTCCATCTTCTTTG	0.323000													8	119					0	0	0.307466	0	0
LOC401127	401127	broad.mit.edu	37	4	39482584	39482584	+	RNA	SNP	T	C	C	rs17438520	by1000genomes	TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:39482584T>C	uc011byn.1	+	1		c.710T>C			LOC401127_uc011byo.1_RNA	NR_026854				Homo sapiens WD repeat domain 5 pseudogene (LOC401127), non-coding RNA.												0						GCCACAAGACTGCTAGCTCAC	0.453000													4	71					0	0	0.150653	0	0
CHRNA9	55584	broad.mit.edu	37	4	40356304	40356304	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:40356304G>A	uc003gva.1	+	5	1223	c.1207G>A	c.(1207-1209)GAC>AAC	p.D403N		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	403	Cytoplasmic (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	CTTAAAGAACGACCTGGGCTG	0.483000													9	78					0	0	0.335167	0	0
GRXCR1	389207	broad.mit.edu	37	4	42895343	42895343	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:42895343C>T	uc003gwt.2	+	1	60	c.60C>T	c.(58-60)ATC>ATT	p.I20I		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	20					cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						GGTTTCGGATCGCGTCCTCTC	0.507000													21	161					0	0	0.608945	0	0
CORIN	10699	broad.mit.edu	37	4	47667058	47667058	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:47667058G>A	uc003gxm.2	-	11	1673	c.1580C>T	c.(1579-1581)CCT>CTT	p.P527L	CORIN_uc011bzf.1_Missense_Mutation_p.P388L|CORIN_uc011bzg.1_Missense_Mutation_p.P460L|CORIN_uc011bzh.1_Missense_Mutation_p.P490L|CORIN_uc011bzi.1_Missense_Mutation_p.P490L	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	527	Extracellular (Potential).|FZ 2.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						CCTGCAAGGAGGGATATGCTC	0.418000													7	49					0	0	0.248553	0	0
CWH43	80157	broad.mit.edu	37	4	48993541	48993541	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:48993541C>T	uc003gyv.2	+	3	488	c.306C>T	c.(304-306)TCC>TCT	p.S102S	CWH43_uc011bzl.1_Silent_p.S75S	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	102	Helical; (Potential).				GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						GGGTGTCTTCCTCACTGATAG	0.438000													25	261					0	0	0.654019	0	0
SULT1E1	6783	broad.mit.edu	37	4	70721046	70721046	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:70721046C>T	uc003heo.2	-	3	357	c.244G>A	c.(244-246)GAA>AAA	p.E82K	SULT1E1_uc010ihv.1_Missense_Mutation_p.E82K	NM_005420	NP_005411	P49888	ST1E1_HUMAN	estrogen sulfotransferase	82					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol|nuclear membrane	estrone sulfotransferase activity|flavonol 3-sulfotransferase activity|steroid binding|steroid sulfotransferase activity			ovary(1)	1						TTTCTGCATTCCAGGAAAGGT	0.333000													5	37					0	0	0.184627	0	0
SULT1E1	6783	broad.mit.edu	37	4	70721113	70721113	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:70721113C>T	uc003heo.2	-	3	290	c.177G>A	c.(175-177)ATG>ATA	p.M59I	SULT1E1_uc010ihv.1_Missense_Mutation_p.M59I	NM_005420	NP_005411	P49888	ST1E1_HUMAN	estrogen sulfotransferase	59					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol|nuclear membrane	estrone sulfotransferase activity|flavonol 3-sulfotransferase activity|steroid binding|steroid sulfotransferase activity			ovary(1)	1						CTTTATAGATCATATACACAA	0.363000													5	52					0	0	0.248553	0	0
ALB	213	broad.mit.edu	37	4	74285330	74285330	+	Missense_Mutation	SNP	G	A	A	rs76587671		TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:74285330G>A	uc003hgs.3	+	13	1832	c.1759G>A	c.(1759-1761)GAT>AAT	p.D587N	ALB_uc003hgw.3_Missense_Mutation_p.D395N|ALB_uc011cbe.1_Missense_Mutation_p.D266N|ALB_uc003hgt.3_Missense_Mutation_p.D587N|ALB_uc010iii.2_Missense_Mutation_p.D472N|ALB_uc003hgu.3_Missense_Mutation_p.D437N|ALB_uc003hgv.3_Missense_Mutation_p.D266N|ALB_uc011cbf.1_Missense_Mutation_p.D477N|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_Missense_Mutation_p.D266N	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	587	Albumin 3.		D -> N (in Fukuoka-1/Paris-2).		bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	CAAGGCTGACGATAAGGAGAC	0.438000													6	124					0	0	0.217242	0	0
AFP	174	broad.mit.edu	37	4	74313370	74313370	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:74313370G>A	uc003hgz.1	+	8	1082	c.1035G>A	c.(1033-1035)GGG>GGA	p.G345G	AFP_uc003hha.1_Silent_p.G345G|AFP_uc011cbg.1_Silent_p.G119G	NM_001134	NP_001125	P02771	FETA_HUMAN	alpha-fetoprotein precursor	345	Albumin 2.				transport		metal ion binding			ovary(1)	1	Breast(15;0.00102)		Epithelial(6;2.42e-05)|all cancers(17;0.000268)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TTTCTTCAGGGGAAAAAAATA	0.333000									Alpha-Fetoprotein_Hereditary_Persistence_of				3	28					0	0	0.184627	0	0
FRAS1	80144	broad.mit.edu	37	4	79205600	79205600	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:79205600G>A	uc003hlb.2	+	13	1737	c.1297G>A	c.(1297-1299)GAC>AAC	p.D433N	FRAS1_uc003hkw.2_Missense_Mutation_p.D433N|FRAS1_uc003hky.1_Missense_Mutation_p.D137N|FRAS1_uc003hkz.2_Missense_Mutation_p.D137N|FRAS1_uc003hla.1_5'Flank	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	433	FU 1.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TCAGTCTCCAGACCACTGTGA	0.458000													13	320					0	0	0.457914	0	0
MAPK10	5602	broad.mit.edu	37	4	87022316	87022316	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:87022316C>T	uc003hpq.2	-	7	686	c.619G>A	c.(619-621)GAC>AAC	p.D207N	MAPK10_uc010ikg.2_Missense_Mutation_p.D169N|MAPK10_uc003hpr.2_Missense_Mutation_p.D169N|MAPK10_uc003hps.2_Missense_Mutation_p.D207N|MAPK10_uc003hpt.2_Missense_Mutation_p.D207N|MAPK10_uc003hpu.2_Missense_Mutation_p.D207N|MAPK10_uc003hpv.2_Missense_Mutation_p.D62N|MAPK10_uc003hpn.2_5'Flank|MAPK10_uc003hpo.2_Missense_Mutation_p.D62N|MAPK10_uc011ccw.1_Missense_Mutation_p.D93N|MAPK10_uc003hpp.2_Missense_Mutation_p.D62N	NM_138982	NP_620448	P53779	MK10_HUMAN	mitogen-activated protein kinase 10 isoform 2	207	Protein kinase.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|JUN kinase activity|MAP kinase kinase activity|protein binding			stomach(1)|breast(1)|central_nervous_system(1)	3		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.243)		OV - Ovarian serous cystadenocarcinoma(123;0.002)		AGTCCAAAGTCCAGGATTTTC	0.433000													9	70					0	0	0.307466	0	0
KLHL8	57563	broad.mit.edu	37	4	88116637	88116637	+	Missense_Mutation	SNP	T	C	C	rs140096013	byFrequency	TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:88116637T>C	uc011cdb.1	-	2	440	c.55A>G	c.(55-57)AAA>GAA	p.K19E	KLHL8_uc003hql.1_Missense_Mutation_p.K19E|KLHL8_uc003hqm.1_Missense_Mutation_p.K19E|KLHL8_uc003hqn.1_Missense_Mutation_p.K19E|KLHL8_uc010ikj.1_5'UTR	NM_020803	NP_065854	Q9P2G9	KLHL8_HUMAN	kelch-like 8	19											0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000603)		TGTTGCCTTTTCCCCTTTGTA	0.368000													5	109					0	0	0.248553	0	0
MEPE	56955	broad.mit.edu	37	4	88767038	88767038	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:88767038G>A	uc003hqy.2	+	4	1057	c.1018G>A	c.(1018-1020)GAT>AAT	p.D340N	MEPE_uc010ikn.2_Missense_Mutation_p.D227N	NM_020203	NP_064588	Q9NQ76	MEPE_HUMAN	matrix, extracellular phosphoglycoprotein with	340					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			ovary(1)|lung(1)|skin(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000432)		GGGCAGCAACGATATCATGGG	0.473000													6	82					0	0	0.217242	0	0
MMRN1	22915	broad.mit.edu	37	4	90816662	90816662	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:90816662G>A	uc003hst.2	+	1	611	c.540G>A	c.(538-540)CGG>CGA	p.R180R	MMRN1_uc010iku.2_Silent_p.R146R	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	180					cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		GAGCCCCACGGGAAACATACC	0.333000													8	72					0	0	0.307466	0	0
ADH1B	125	broad.mit.edu	37	4	100231953	100231953	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:100231953C>T	uc003hus.3	-	8	1156	c.1072G>A	c.(1072-1074)GAA>AAA	p.E358K	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.E318K|ADH1B_uc011ceh.1_Missense_Mutation_p.E203K|ADH1B_uc011cei.1_Missense_Mutation_p.E318K	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	358					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	TCAAATCCTTCATTTATTTTT	0.348000													6	72					0	0	0.217242	0	0
ADH1B	125	broad.mit.edu	37	4	100237199	100237199	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:100237199G>A	uc003hus.3	-	5	507	c.423C>T	c.(421-423)TTC>TTT	p.F141F	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Silent_p.F101F|ADH1B_uc011ceh.1_Intron|ADH1B_uc011cei.1_Silent_p.F101F	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	141					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	TGGTGCCAAGGAAGTGGTGAA	0.577000													17	134					0	0	0.520397	0	0
DKK2	27123	broad.mit.edu	37	4	107845734	107845734	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:107845734C>T	uc003hyi.2	-	3	1202	c.497G>A	c.(496-498)GGA>GAA	p.G166E	DKK2_uc010ilw.1_RNA|DKK2_uc003hyj.1_Missense_Mutation_p.G166E	NM_014421	NP_055236	Q9UBU2	DKK2_HUMAN	dickkopf homolog 2 precursor	166					multicellular organismal development|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular space				ovary(3)|lung(1)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.34e-06)		GTGTGGTCTTCCTAGATTCTG	0.393000													13	188					0	0	0.457914	0	0
TMEM155	132332	broad.mit.edu	37	4	122683021	122683021	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:122683021G>A	uc003idx.1	-	4	577	c.18C>T	c.(16-18)ATC>ATT	p.I6I	TMEM155_uc003idy.1_Silent_p.I6I	NM_152399	NP_689612	Q4W5P6	TM155_HUMAN	transmembrane protein 155 precursor	6						extracellular region					0						AGATTGTCCTGATAAGATCTG	0.308000													7	63					0	0	0.278610	0	0
FAT4	79633	broad.mit.edu	37	4	126402785	126402785	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:126402785C>T	uc003ifj.3	+	15	12708	c.12708C>T	c.(12706-12708)GCC>GCT	p.A4236A	FAT4_uc011cgp.1_Silent_p.A2477A|FAT4_uc003ifi.1_Silent_p.A1714A	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4236	Laminin G-like 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TACGAGGTGCCATGTTGGAGC	0.438000													6	113					0	0	0.278610	0	0
MAML3	55534	broad.mit.edu	37	4	140811827	140811827	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:140811827G>A	uc003ihz.1	-	2	1515	c.763C>T	c.(763-765)CCT>TCT	p.P255S	MAML3_uc011chd.1_Intron	NM_018717	NP_061187	Q96JK9	MAML3_HUMAN	mastermind-like 3	255					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			ovary(1)	1	all_hematologic(180;0.162)					CCGTTGACAGGAAGTTTAATC	0.473000													14	144					0	0	0.435327	0	0
FGA	2243	broad.mit.edu	37	4	155508050	155508050	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:155508050G>A	uc003iod.1	-	5	589	c.531C>T	c.(529-531)ATC>ATT	p.I177I	FGA_uc003ioe.1_Silent_p.I177I|FGA_uc003iof.1_Intron	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	177	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	GACAAGATCGGATCTTAATAT	0.398000													8	72					0	0	0.307466	0	0
ACCN5	51802	broad.mit.edu	37	4	156764950	156764950	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:156764950G>A	uc003ipe.1	-	5	791	c.744C>T	c.(742-744)TTC>TTT	p.F248F		NM_017419	NP_059115	Q9NY37	ACCN5_HUMAN	amiloride-sensitive cation channel 5,	248	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0464)|Kidney(143;0.058)|COAD - Colon adenocarcinoma(41;0.141)		CAGCATCAACGAAACCAAGGG	0.413000													7	79					0	0	0.248553	0	0
ODZ3	55714	broad.mit.edu	37	4	183664489	183664489	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:183664489C>T	uc003ivd.1	+	18	3583	c.3546C>T	c.(3544-3546)ATC>ATT	p.I1182I	ODZ3_uc003ive.1_Silent_p.I588I	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1182	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CTTGTGGGATCGATGGCAGTC	0.498000													9	92					0	0	0.335167	0	0
ACSL1	2180	broad.mit.edu	37	4	185698103	185698103	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr4:185698103G>A	uc003iww.2	-	6	806	c.512C>T	c.(511-513)TCG>TTG	p.S171L	ACSL1_uc011ckm.1_5'UTR|ACSL1_uc003iwt.1_Missense_Mutation_p.S171L|ACSL1_uc003iwu.1_Missense_Mutation_p.S171L|ACSL1_uc011ckn.1_Missense_Mutation_p.S137L|ACSL1_uc003iwv.1_Missense_Mutation_p.S171L	NM_001995	NP_001986	P33121	ACSL1_HUMAN	acyl-CoA synthetase long-chain family member 1	171	Cytoplasmic (Potential).				digestion|fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|regulation of fatty acid oxidation|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity			ovary(2)	2		all_lung(41;7.57e-14)|Lung NSC(41;1.81e-13)|Colorectal(36;0.00172)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0315)|all_neural(102;0.107)|Medulloblastoma(177;0.146)		all cancers(43;1.33e-28)|Epithelial(43;5.3e-25)|OV - Ovarian serous cystadenocarcinoma(60;4.88e-11)|Colorectal(24;3.59e-06)|STAD - Stomach adenocarcinoma(60;2.72e-05)|GBM - Glioblastoma multiforme(59;2.83e-05)|BRCA - Breast invasive adenocarcinoma(30;7.66e-05)|COAD - Colon adenocarcinoma(29;0.000538)|LUSC - Lung squamous cell carcinoma(40;0.008)|READ - Rectum adenocarcinoma(43;0.0419)	Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	GATCACCATCGAATAAGCAAA	0.393000													6	37					0	0	0.278610	0	0
SDHA	6389	broad.mit.edu	37	5	251119	251119	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:251119C>T	uc003jao.3	+	12	1679	c.1564C>T	c.(1564-1566)CAT>TAT	p.H522Y	SDHA_uc011clv.1_Missense_Mutation_p.H522Y|SDHA_uc011clw.1_Missense_Mutation_p.H474Y|SDHA_uc003jap.3_Intron|SDHA_uc003jaq.3_Missense_Mutation_p.H297Y|SDHA_uc003jar.3_Missense_Mutation_p.H116Y	NM_004168	NP_004159	P31040	DHSA_HUMAN	succinate dehydrogenase complex, subunit A,	522					nervous system development|respiratory electron transport chain|succinate metabolic process|transport|tricarboxylic acid cycle	mitochondrial respiratory chain complex II	electron carrier activity|flavin adenine dinucleotide binding|protein binding|succinate dehydrogenase (ubiquinone) activity				0			Epithelial(17;0.0159)|all cancers(22;0.0236)|OV - Ovarian serous cystadenocarcinoma(19;0.0674)|Lung(60;0.113)		Succinic acid(DB00139)	AATGCAAAATCATGCTGCCGT	0.438000									Familial_Paragangliomas				9	198					0	0	0.361761	0	0
SLC6A3	6531	broad.mit.edu	37	5	1420737	1420737	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:1420737C>T	uc003jck.2	-	6	995	c.874G>A	c.(874-876)GAC>AAC	p.D292N		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	292					cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	CTGATGCCGTCTATGGCTCCA	0.597000													13	152					0	0	0.457914	0	0
KIAA0947	23379	broad.mit.edu	37	5	5463759	5463759	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:5463759C>T	uc003jdm.3	+	13	4534	c.4312C>T	c.(4312-4314)CAG>TAG	p.Q1438*		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	1438										ovary(1)|central_nervous_system(1)	2						ACATGTGGACCAGGTCACACT	0.463000													8	116					0	0	0.278610	0	0
DNAH5	1767	broad.mit.edu	37	5	13714594	13714594	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:13714594C>T	uc003jfd.2	-	75	13087	c.13045G>A	c.(13045-13047)GAT>AAT	p.D4349N	DNAH5_uc003jfc.2_Missense_Mutation_p.D517N	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4349					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CGGGTCTCATCCCCTCCACCA	0.587000									Kartagener_syndrome				16	138					0	0	0.500413	0	0
DNAH5	1767	broad.mit.edu	37	5	13737588	13737588	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:13737588C>T	uc003jfd.2	-	66	11270	c.11228G>A	c.(11227-11229)AGA>AAA	p.R3743K	DNAH5_uc003jfc.2_Intron	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3743	Potential.|AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CAGATGAGTTCTTTCTTTCTC	0.378000									Kartagener_syndrome				9	55					0	0	0.307466	0	0
DNAH5	1767	broad.mit.edu	37	5	13753398	13753398	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:13753398G>A	uc003jfd.2	-	63	10858	c.10816C>T	c.(10816-10818)CCA>TCA	p.P3606S	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3606	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGAGTCTGTGGATCAATTAAC	0.363000									Kartagener_syndrome				6	90					0	0	0.217242	0	0
DNAH5	1767	broad.mit.edu	37	5	13809241	13809241	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:13809241G>A	uc003jfd.2	-	46	7706	c.7664C>T	c.(7663-7665)ACC>ATC	p.T2555I		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2555	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTCTGGGGTGGTATCAGACGG	0.433000									Kartagener_syndrome				15	149					0	0	0.520397	0	0
IL7R	3575	broad.mit.edu	37	5	35874603	35874603	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:35874603C>T	uc003jjs.2	+	6	848	c.759C>T	c.(757-759)GTC>GTT	p.V253V	IL7R_uc011coo.1_Intron|IL7R_uc011cop.1_Intron	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	253	Helical; (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			TTTTCTCTGTCGCTCTGTTGG	0.438000													9	112					0	0	0.361761	0	0
OSMR	9180	broad.mit.edu	37	5	38884058	38884058	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:38884058G>A	uc003jln.1	+	5	915	c.548G>A	c.(547-549)GGG>GAG	p.G183E	OSMR_uc003jlm.1_Missense_Mutation_p.G183E	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	183	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					TATTTGGAAGGGAAACAGATT	0.363000													8	113					0	0	0.307466	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41000926	41000926	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:41000926C>T	uc003jmj.3	-	38	4694	c.4204G>A	c.(4204-4206)GAT>AAT	p.D1402N	HEATR7B2_uc003jmi.3_Missense_Mutation_p.D957N	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1402	HEAT 15.						binding			ovary(6)|central_nervous_system(2)	8						AATCTCACATCATCCTGCTCC	0.478000													4	11					0	0	0.150653	0	0
HCN1	348980	broad.mit.edu	37	5	45262159	45262159	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:45262159G>A	uc003jok.2	-	8	2562	c.2537C>T	c.(2536-2538)TCG>TTG	p.S846L		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	846	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						GGCTCCCGACGACATCTGTCG	0.647000													9	124					0	0	0.307466	0	0
CMYA5	202333	broad.mit.edu	37	5	79030121	79030121	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:79030121G>A	uc003kgc.2	+	2	5605	c.5533G>A	c.(5533-5535)GAT>AAT	p.D1845N		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1845						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CTCTTCTGAAGATAAACAAGA	0.368000													9	61					0	0	0.307466	0	0
CMYA5	202333	broad.mit.edu	37	5	79030587	79030587	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:79030587T>C	uc003kgc.2	+	2	6071	c.5999T>C	c.(5998-6000)GTA>GCA	p.V2000A		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2000						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GCTGGAAATGTAGAGAGAAAC	0.408000													8	71					0	0	0.278610	0	0
GPR98	84059	broad.mit.edu	37	5	90368365	90368365	+	Missense_Mutation	SNP	T	G	G			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:90368365T>G	uc003kju.2	+	86	18350	c.18254T>G	c.(18253-18255)GTG>GGG	p.V6085G	GPR98_uc003kjt.2_Missense_Mutation_p.V3791G|GPR98_uc003kjw.2_Missense_Mutation_p.V1746G|GPR98_uc003kjx.2_Missense_Mutation_p.V113G	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	6085	Cytoplasmic (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GCCTACCAGGTGAAGCCACAG	0.448000													39	198					0	0	0.812448	0	0
TSSK1B	83942	broad.mit.edu	37	5	112769552	112769552	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:112769552C>T	uc003kqm.2	-	1	1177	c.985G>A	c.(985-987)GAG>AAG	p.E329K	MCC_uc003kql.3_Intron	NM_032028	NP_114417	Q9BXA7	TSSK1_HUMAN	testis-specific serine kinase 1	329					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|skin(2)|stomach(1)	5		all_cancers(142;0.0138)|all_epithelial(76;0.000445)|Colorectal(10;0.00814)|Prostate(80;0.0115)|Ovarian(225;0.156)		Epithelial(69;4.15e-08)|OV - Ovarian serous cystadenocarcinoma(64;4.49e-08)|all cancers(49;3.2e-06)|COAD - Colon adenocarcinoma(37;0.0371)|Colorectal(14;0.0449)		GCTGTCCCCTCGGGTTTTGTC	0.617000													6	26					0	0	0.248553	0	0
CDO1	1036	broad.mit.edu	37	5	115148929	115148929	+	Missense_Mutation	SNP	C	T	T	rs147725758		TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:115148929C>T	uc003krg.2	-	2	508	c.197G>A	c.(196-198)GGA>GAA	p.G66E		NM_001801	NP_001792	Q16878	CDO1_HUMAN	cysteine dioxygenase	66					inflammatory response|sulfur amino acid biosynthetic process|taurine biosynthetic process	cytosol	cysteine dioxygenase activity	p.G66E(1)		large_intestine(1)|skin(1)	2		all_cancers(142;0.0046)|all_epithelial(76;0.000161)|Prostate(80;0.0132)|Ovarian(225;0.0776)		OV - Ovarian serous cystadenocarcinoma(64;7.8e-08)|Epithelial(69;7.32e-07)|all cancers(49;3.24e-05)	L-Cysteine(DB00151)|NADH(DB00157)	TTTTCCATTTCCTTGATCCAC	0.333000													8	67					0	0	0.387290	0	0
SNCAIP	9627	broad.mit.edu	37	5	121739511	121739511	+	Silent	SNP	G	A	A	rs149915358	byFrequency	TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:121739511G>A	uc003ksw.1	+	3	287	c.81G>A	c.(79-81)ACG>ACA	p.T27T	SNCAIP_uc011cwl.1_5'UTR|SNCAIP_uc010jct.2_Silent_p.T27T|SNCAIP_uc003ksx.1_Silent_p.T74T|SNCAIP_uc003ksy.1_Missense_Mutation_p.R12Q|SNCAIP_uc003ksz.1_Missense_Mutation_p.R12Q|SNCAIP_uc010jcu.2_Missense_Mutation_p.R12Q|SNCAIP_uc011cwm.1_Missense_Mutation_p.R12Q|SNCAIP_uc003kta.1_Missense_Mutation_p.R10Q|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.R12Q|SNCAIP_uc010jcx.1_Silent_p.T27T	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	27					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		CACTCAAGACGATCCCAGAAC	0.453000													15	151					0	0	0.479597	0	0
FBN2	2201	broad.mit.edu	37	5	127637148	127637148	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:127637148A>T	uc003kuu.2	-	47	6411	c.5972T>A	c.(5971-5973)TTT>TAT	p.F1991Y		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1991	EGF-like 33; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		AATTTCATTAAAACAACGTCC	0.358000													7	68					0	0	0.307466	0	0
SLC27A6	28965	broad.mit.edu	37	5	128362849	128362849	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:128362849C>T	uc003kuy.2	+	8	1675	c.1279C>T	c.(1279-1281)CGA>TGA	p.R427*	SLC27A6_uc003kuz.2_Nonsense_Mutation_p.R427*	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	427					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		TCTCATTTCTCGAGTGAATGC	0.368000													16	82					0	0	0.520397	0	0
P4HA2	8974	broad.mit.edu	37	5	131546056	131546056	+	Silent	SNP	C	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:131546056C>A	uc003kwh.2	-	6	1194	c.630G>T	c.(628-630)CTG>CTT	p.L210L	P4HA2_uc003kwg.2_Silent_p.L210L|P4HA2_uc003kwi.2_Silent_p.L210L|P4HA2_uc003kwk.2_Silent_p.L210L|P4HA2_uc003kwl.2_Silent_p.L210L|P4HA2_uc003kwj.2_Silent_p.L210L	NM_004199	NP_004190	O15460	P4HA2_HUMAN	prolyl 4-hydroxylase, alpha II subunit isoform 1	210	TPR.					endoplasmic reticulum lumen	electron carrier activity|iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity|protein binding				0		all_cancers(142;0.103)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Proline(DB00172)|Succinic acid(DB00139)	TGAGGTAGTCCAGCACCTGTG	0.562000													27	224					9.80776e-20	9.93258e-20	0.706142	1	0
PCDHA1	56147	broad.mit.edu	37	5	140166458	140166458	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:140166458G>A	uc003lhb.2	+	1	583	c.583G>A	c.(583-585)GAA>AAA	p.E195K	PCDHA1_uc003lha.2_Missense_Mutation_p.E195K|PCDHA1_uc003lgz.2_Missense_Mutation_p.E195K	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	195	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTTTGGCTTGAATTGAGAAA	0.438000													13	102					0	0	0.411799	0	0
PCDHA3	56145	broad.mit.edu	37	5	140181436	140181436	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:140181436G>A	uc003lhf.2	+	1	654	c.654G>A	c.(652-654)GGG>GGA	p.G218G	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.G218G	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	218	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGATGGTGGGAAACCAGAGC	0.393000													12	96					0	0	0.411799	0	0
PCDHA5	56143	broad.mit.edu	37	5	140203180	140203180	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:140203180C>T	uc003lhl.2	+	1	1820	c.1820C>T	c.(1819-1821)TCG>TTG	p.S607L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.S607L|PCDHA5_uc003lhj.1_Missense_Mutation_p.S607L	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	607	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTTGGCTTTCGTATGAGCTG	0.652000													21	104					0	0	0.592651	0	0
PCDHA10	56139	broad.mit.edu	37	5	140237669	140237669	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:140237669C>T	uc003lhx.2	+	1	2036	c.2036C>T	c.(2035-2037)TCG>TTG	p.S679L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc011dad.1_Missense_Mutation_p.S679L	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	679	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGGCCTCGTCGCGGGCTTCA	0.662000													11	90					0	0	0.387290	0	0
PCDHA12	56137	broad.mit.edu	37	5	140256422	140256422	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:140256422C>T	uc003lic.2	+	1	1492	c.1365C>T	c.(1363-1365)TTC>TTT	p.F455F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Silent_p.F455F	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	455	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCCTGCGTTCGCGCAGCCCG	0.662000													28	172					0	0	0.693898	0	0
PCDHA13	56136	broad.mit.edu	37	5	140262783	140262783	+	Silent	SNP	C	T	T	rs145698462		TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:140262783C>T	uc003lif.2	+	1	930	c.930C>T	c.(928-930)TTC>TTT	p.F310F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Silent_p.F310F|PCDHA13_uc003lid.2_Silent_p.F310F	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	310	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AACTAGATTTCGAAGAAAAGA	0.378000													12	96					0	0	0.411799	0	0
PCDHB3	56132	broad.mit.edu	37	5	140482555	140482555	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:140482555C>T	uc003lio.2	+	1	2322	c.2322C>T	c.(2320-2322)TTC>TTT	p.F774F	uc003lin.2_5'Flank	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	774	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCCCAACTTCGTTGCTCAGG	0.507000													19	118					0	0	0.654019	0	0
PCDHB8	56128	broad.mit.edu	37	5	140559463	140559463	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:140559463C>T	uc011dai.1	+	1	2034	c.1848C>T	c.(1846-1848)TTC>TTT	p.F616F	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	616	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCGGGCTGTTCGGTGTGTGGG	0.692000													13	108					0	0	0.500413	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140767861	140767861	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:140767861C>T	uc003lkc.1	+	1	410	c.410C>T	c.(409-411)TCC>TTC	p.S137F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Missense_Mutation_p.S137F	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	137	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGCAAAATTCCTTTGAGCTG	0.433000													7	53					0	0	0.335167	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140768801	140768801	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:140768801C>T	uc003lkc.1	+	1	1350	c.1350C>T	c.(1348-1350)TTC>TTT	p.F450F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Silent_p.F450F	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	450	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCCGGTTTTCTCACAGTCTT	0.547000													14	230					0	0	0.479597	0	0
PCDHGA10	56106	broad.mit.edu	37	5	140792935	140792935	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:140792935G>A	uc003lkl.1	+	1	193	c.193G>A	c.(193-195)GAG>AAG	p.E65K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc011day.1_Missense_Mutation_p.E65K	NM_018913	NP_061736	Q9Y5H3	PCDGA_HUMAN	protocadherin gamma subfamily A, 10 isoform 1	65	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAGCTGGCGGAGCGCGGAGT	0.607000													24	168					0	0	0.654019	0	0
ARHGAP26	23092	broad.mit.edu	37	5	142258998	142258998	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:142258998C>T	uc011dbj.1	+	4	407	c.372C>T	c.(370-372)ATC>ATT	p.I124I	ARHGAP26_uc003lmt.2_Silent_p.I124I|ARHGAP26_uc003lmw.2_Silent_p.I124I	NM_015071	NP_055886	Q9UNA1	RHG26_HUMAN	GTPase regulator associated with the focal	124					actin cytoskeleton organization|filopodium assembly|nervous system development|small GTPase mediated signal transduction	cytoskeleton|cytosol|focal adhesion	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(1)	1		all_hematologic(541;0.0416)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGGAACAGATCGGGGCTGCCA	0.438000													16	123					0	0	0.500413	0	0
GPR151	134391	broad.mit.edu	37	5	145894722	145894722	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:145894722C>T	uc003lod.1	-	1	955	c.955G>A	c.(955-957)GGT>AGT	p.G319S		NM_194251	NP_919227	Q8TDV0	GP151_HUMAN	G protein-coupled receptor 151	319	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TTCCATACACCTTTCAAGCCT	0.448000													5	56					0	0	0.184627	0	0
JAKMIP2	9832	broad.mit.edu	37	5	146997522	146997522	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:146997522G>A	uc003loq.1	-	19	2680	c.2298C>T	c.(2296-2298)GAC>GAT	p.D766D	JAKMIP2_uc011dbx.1_Silent_p.D724D|JAKMIP2_uc003lor.1_Silent_p.D745D|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Silent_p.D766D	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	766	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAATCTGACAGTCATACTCTC	0.468000													8	65					0	0	0.335167	0	0
GRIA1	2890	broad.mit.edu	37	5	153030017	153030017	+	Silent	SNP	G	A	A	rs141629018		TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:153030017G>A	uc003lva.3	+	4	953	c.588G>A	c.(586-588)AAG>AAA	p.K196K	GRIA1_uc003luy.3_Silent_p.K196K|GRIA1_uc003luz.3_Silent_p.K101K|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.K116K|GRIA1_uc011dcx.1_Silent_p.K127K|GRIA1_uc011dcy.1_Silent_p.K206K|GRIA1_uc011dcz.1_Silent_p.K206K|GRIA1_uc010jia.1_Silent_p.K176K	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	196	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	AGAAGAAAAAGGAGCGGCTGG	0.537000													14	133					0	0	0.457914	0	0
GRIA1	2890	broad.mit.edu	37	5	153077667	153077667	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:153077667G>A	uc003lva.3	+	9	1563	c.1198G>A	c.(1198-1200)GAT>AAT	p.D400N	GRIA1_uc003luy.3_Missense_Mutation_p.D400N|GRIA1_uc003luz.3_Missense_Mutation_p.D305N|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.D320N|GRIA1_uc011dcx.1_Missense_Mutation_p.D331N|GRIA1_uc011dcy.1_Missense_Mutation_p.D410N|GRIA1_uc011dcz.1_Missense_Mutation_p.D410N|GRIA1_uc010jia.1_Missense_Mutation_p.D380N	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	400	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	AGCTGGGGGCGATAATTCAAG	0.478000													8	79					0	0	0.335167	0	0
KIF4B	285643	broad.mit.edu	37	5	154393444	154393444	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:154393444C>T	uc010jih.1	+	1	185	c.25C>T	c.(25-27)CCT>TCT	p.P9S		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	9	Kinesin-motor.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			GAAGGGAATTCCTGTAAGAGT	0.587000													13	128					0	0	0.520397	0	0
EBF1	1879	broad.mit.edu	37	5	158250217	158250217	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:158250217G>A	uc010jip.2	-	8	1047	c.745C>T	c.(745-747)CCC>TCC	p.P249S	EBF1_uc011ddw.1_Missense_Mutation_p.P116S|EBF1_uc011ddx.1_Missense_Mutation_p.P249S|EBF1_uc003lxl.3_Missense_Mutation_p.P226S	NM_024007	NP_076870	Q9UH73	COE1_HUMAN	early B-cell factor	249					multicellular organismal development	nucleus	DNA binding|metal ion binding		HMGA2/EBF1(2)	soft_tissue(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Acute lymphoblastic leukemia(3;2.99e-06)|all_hematologic(3;0.000772)|Medulloblastoma(196;0.037)|all_neural(177;0.143)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCTTCCGAGGGGTCAAGCCTC	0.463000			T	HMGA2	lipoma								9	65					0	0	0.335167	0	0
SLIT3	6586	broad.mit.edu	37	5	168119658	168119658	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:168119658G>A	uc003mab.2	-	29	3550	c.3130C>T	c.(3130-3132)CTC>TTC	p.L1044F	SLIT3_uc010jjg.2_Missense_Mutation_p.L1051F	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1044	EGF-like 4.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGCTGACAGAGGTTCAGCTCA	0.572000													9	79					0	0	0.335167	0	0
CDHR2	54825	broad.mit.edu	37	5	176016391	176016391	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:176016391G>A	uc003mem.1	+	23	3135	c.3069G>A	c.(3067-3069)AGG>AGA	p.R1023R	CDHR2_uc003men.1_Silent_p.R1023R	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	1023	Extracellular (Potential).|Cadherin 9.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						TCCAGGCCAGGGACAGACCTT	0.647000													12	206					0	0	0.457914	0	0
GRM6	2916	broad.mit.edu	37	5	178417622	178417622	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr5:178417622G>A	uc003mjr.2	-	4	1162	c.983C>T	c.(982-984)ACC>ATC	p.T328I	GRM6_uc010jla.1_5'Flank|GRM6_uc003mjs.1_5'Flank	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	328	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		GGGCAGGATGGTGATGGCCCC	0.642000													5	28					0	0	0.217242	0	0
DSP	1832	broad.mit.edu	37	6	7574331	7574331	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr6:7574331G>A	uc003mxp.1	+	16	2422	c.2143G>A	c.(2143-2145)GAT>AAT	p.D715N	DSP_uc003mxq.1_Missense_Mutation_p.D715N	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	715	Globular 1.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TGTGCAGAATGATTCACAAGC	0.294000													4	65					0	0	0.150653	0	0
DSP	1832	broad.mit.edu	37	6	7583542	7583542	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr6:7583542G>A	uc003mxp.1	+	24	6326	c.6047G>A	c.(6046-6048)GGA>GAA	p.G2016E	DSP_uc003mxq.1_Missense_Mutation_p.G1417E	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2016	Plectin 1.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		CGGGGTGCAGGATCTATCGCT	0.453000													11	104					0	0	0.361761	0	0
GCM2	9247	broad.mit.edu	37	6	10874870	10874870	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr6:10874870C>T	uc003mzn.3	-	5	951	c.879G>A	c.(877-879)AAG>AAA	p.K293K	SYCP2L_uc011dim.1_Intron	NM_004752	NP_004743	O75603	GCM2_HUMAN	glial cells missing homolog 2	293					cellular calcium ion homeostasis|cellular phosphate ion homeostasis|parathyroid gland development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)				TGGTGGAATCCTTATAAAGGG	0.413000													12	336					0	0	0.435327	0	0
SLC17A2	10246	broad.mit.edu	37	6	25921482	25921482	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr6:25921482G>A	uc011dkb.1	-	3	482	c.399C>T	c.(397-399)ACC>ACT	p.T133T	SLC17A2_uc011dkc.1_Silent_p.T133T|SLC17A2_uc003nfl.2_Silent_p.T133T			O00624	NPT3_HUMAN	SubName: Full=Solute carrier family 17 (Sodium phosphate), member 2, isoform CRA_b; SubName: Full=Putative uncharacterized protein SLC17A2;	133	Helical; (Potential).				phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			ovary(1)	1						GTGTAAAGAGGGTGAGAAGGG	0.463000													12	91					0	0	0.411799	0	0
OR2J3	442186	broad.mit.edu	37	6	29080253	29080253	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr6:29080253C>T	uc011dll.1	+	1	586	c.586C>T	c.(586-588)CAT>TAT	p.H196Y		NM_001005216	NP_001005216	O76001	OR2J3_HUMAN	olfactory receptor, family 2, subfamily J,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGTTGATACCCATGTCAATGA	0.463000													15	125					0	0	0.457914	0	0
PPP1R10	5514	broad.mit.edu	37	6	30571352	30571352	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr6:30571352G>A	uc003nqn.1	-	16	2216	c.1664C>T	c.(1663-1665)CCT>CTT	p.P555L	PPP1R10_uc010jsc.1_Missense_Mutation_p.P209L	NM_002714	NP_002705	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	555	Gly-rich.|Interaction with WDR82 (By similarity).				protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			ovary(2)|lung(1)|kidney(1)	4						CAGAACTGGAGGCAACTTGGA	0.562000													21	262					0	0	0.608945	0	0
C2	717	broad.mit.edu	37	6	31902061	31902061	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr6:31902061C>T	uc003nyf.2	+	6	1098	c.834C>T	c.(832-834)TCC>TCT	p.S278S	C2_uc003nyc.2_Intron|C2_uc011doo.1_Intron|C2_uc011dop.1_Intron|C2_uc003nye.3_Silent_p.S278S|C2_uc010jtk.2_Silent_p.S146S|C2_uc011doq.1_Silent_p.S249S|C2_uc003nyg.2_Intron|CFB_uc011dor.1_Intron|C2_uc003nyh.1_5'Flank	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	278	VWFA.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		AGAGCGCCTCCCTCATGGTGG	0.552000													30	275					0	0	0.750413	0	0
TNXB	7148	broad.mit.edu	37	6	32035624	32035624	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr6:32035624C>T	uc003nzl.2	-	18	6560	c.6358G>A	c.(6358-6360)GGC>AGC	p.G2120S		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2192	Fibronectin type-III 14.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding	p.G2207C(1)			0						TCGAAGCGGCCCTGGGGGACG	0.687000													6	115					0	0	0.435327	0	0
COL11A2	1302	broad.mit.edu	37	6	33142311	33142311	+	Missense_Mutation	SNP	C	T	T	rs121912948		TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr6:33142311C>T	uc003ocx.1	-	31	2651	c.2423G>A	c.(2422-2424)GGA>GAA	p.G808E	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Missense_Mutation_p.G722E|COL11A2_uc003ocz.1_Missense_Mutation_p.G701E	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	808	Triple-helical region.		G -> E (in DFNA13).		cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						CACCTTGGGTCCCTGACGTCC	0.547000													3	27					0	0	0.150653	0	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333333	33333333	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr6:33333333G>A	uc003shx.2	-	1	807	c.673C>T	c.(673-675)CCT>TCT	p.P225S		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						AGTTAGACAGGAGGCAGCAGC	0.577000													3	27					0	0	0.150653	0	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333342	33333342	+	Silent	SNP	G	A	A	rs140475230	by1000genomes	TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr6:33333342G>A	uc003shx.2	-	1	798	c.664C>T	c.(664-666)CTG>TTG	p.L222L		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						GGAGGCAGCAGCTTCTCAAGA	0.562000													3	29					0	0	0.150653	0	0
ITPR3	3710	broad.mit.edu	37	6	33608285	33608285	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr6:33608285G>A	uc011drk.1	+	2	333	c.114G>A	c.(112-114)GTG>GTA	p.V38V		NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	38	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						GCTGTGTGGTGGAGCCCGCGG	0.637000													40	290					0	0	0.870114	0	0
ZNF76	7629	broad.mit.edu	37	6	35258483	35258483	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr6:35258483C>T	uc003oki.1	+	7	820	c.615C>T	c.(613-615)GCC>GCT	p.A205A	ZNF76_uc011dsy.1_Silent_p.A205A|ZNF76_uc011dsz.1_Silent_p.A205A|ZNF76_uc003okj.1_Silent_p.A205A	NM_003427	NP_003418	P36508	ZNF76_HUMAN	zinc finger protein 76 (expressed in testis)	205	C2H2-type 2.				regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTGGAAAGGCCTTTGCCACAG	0.547000													22	164					0	0	0.654019	0	0
KIAA0240	23506	broad.mit.edu	37	6	42796837	42796837	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr6:42796837C>T	uc003osn.1	+	6	917	c.766C>T	c.(766-768)CAT>TAT	p.H256Y	KIAA0240_uc003osm.1_Missense_Mutation_p.H256Y|KIAA0240_uc011duw.1_Missense_Mutation_p.H256Y|KIAA0240_uc003oso.1_Missense_Mutation_p.H256Y|KIAA0240_uc003osp.1_Missense_Mutation_p.H256Y	NM_015349	NP_056164	Q6AI39	K0240_HUMAN	hypothetical protein LOC23506	256										ovary(1)	1	Colorectal(47;0.196)		Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00524)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.104)			GCTCCTGGTTCATAGACAGAC	0.448000													15	119					0	0	0.479597	0	0
ZNF318	24149	broad.mit.edu	37	6	43307487	43307487	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr6:43307487G>A	uc003oux.2	-	10	4327	c.4249C>T	c.(4249-4251)CTA>TTA	p.L1417L	ZNF318_uc003ouw.2_Intron	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	1417					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			GACCCTTTTAGAATCACCTCT	0.383000													8	66					0	0	0.278610	0	0
COL12A1	1303	broad.mit.edu	37	6	75828803	75828803	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr6:75828803G>A	uc003phs.2	-	46	7476	c.7310C>T	c.(7309-7311)TCC>TTC	p.S2437F	COL12A1_uc003pht.2_Missense_Mutation_p.S1273F	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	2437	VWFA 4.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						CTCATCCTGGGACCGACCGTC	0.473000													6	120					0	0	0.248553	0	0
IMPG1	3617	broad.mit.edu	37	6	76728558	76728558	+	Silent	SNP	G	A	A	rs142510377	by1000genomes	TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr6:76728558G>A	uc003pik.1	-	7	814	c.684C>T	c.(682-684)TTC>TTT	p.F228F		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	228					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				CCAACACAGCGAATTCTGTTT	0.413000													9	82					0	0	0.307466	0	0
RSPO3	84870	broad.mit.edu	37	6	127517039	127517039	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr6:127517039A>T	uc003qar.2	+	5	996	c.706A>T	c.(706-708)AAA>TAA	p.K236*	RSPO3_uc003qas.1_Nonsense_Mutation_p.K236*	NM_032784	NP_116173	Q9BXY4	RSPO3_HUMAN	R-spondin 3 precursor	236						extracellular region	heparin binding				0				GBM - Glioblastoma multiforme(226;0.0555)		ACCTGACAGCAAAAGTCTGGA	0.279000													3	31					0	0	0.115264	0	0
SHPRH	257218	broad.mit.edu	37	6	146266598	146266598	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr6:146266598G>A	uc003qlf.2	-	8	1896	c.1497C>T	c.(1495-1497)ATC>ATT	p.I499I	SHPRH_uc003qld.2_Silent_p.I499I|SHPRH_uc003qle.2_Silent_p.I499I|SHPRH_uc003qlg.1_Silent_p.I55I|SHPRH_uc003qlj.1_Silent_p.I388I	NM_001042683	NP_001036148	Q149N8	SHPRH_HUMAN	SNF2 histone linker PHD RING helicase isoform a	499	H15.				DNA repair|nucleosome assembly	nucleosome|nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)|kidney(1)|central_nervous_system(1)	3		Ovarian(120;0.0365)		OV - Ovarian serous cystadenocarcinoma(155;1.47e-07)|GBM - Glioblastoma multiforme(68;0.0124)		CATGGCCTTTGATCTGTTTCA	0.353000													6	44					0	0	0.248553	0	0
INTS1	26173	broad.mit.edu	37	7	1516525	1516525	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:1516525G>A	uc003skn.2	-	36	5069	c.4968C>T	c.(4966-4968)TTC>TTT	p.F1656F	INTS1_uc003skm.1_5'Flank	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	1656					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		GGTAGGGACGGAACGAGGGCA	0.642000													5	21					0	0	0.217242	0	0
THSD7A	221981	broad.mit.edu	37	7	11501681	11501681	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:11501681C>T	uc003ssf.3	-	10	2710	c.2458G>A	c.(2458-2460)GAA>AAA	p.E820K		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	820	TSP type-1 8.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		GCCTTCTCTTCATAGAGGGGA	0.542000										HNSCC(18;0.044)			17	296					0	0	0.575678	0	0
HDAC9	9734	broad.mit.edu	37	7	19015531	19015531	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:19015531C>T	uc003sui.2	+	24	3166	c.3125C>T	c.(3124-3126)TCC>TTC	p.S1042F	HDAC9_uc003sue.2_Missense_Mutation_p.S1039F|HDAC9_uc003suj.2_Missense_Mutation_p.S998F|HDAC9_uc003suk.2_Missense_Mutation_p.S287F	NM_178425	NP_848512	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 5	Error:Variant_position_missing_in_Q9UKV0_after_alignment					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	GCCCTGGCCTCCCTAACAGTG	0.537000													9	61					0	0	0.361761	0	0
RAPGEF5	9771	broad.mit.edu	37	7	22259514	22259514	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:22259514C>T	uc003svg.2	-	9	821	c.508G>A	c.(508-510)GAC>AAC	p.D170N		NM_012294	NP_036426	Q92565	RPGF5_HUMAN	Rap guanine nucleotide exchange factor (GEF) 5	Error:Variant_position_missing_in_Q92565_after_alignment					nervous system development|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	nucleus	GTP-dependent protein binding|Rap guanyl-nucleotide exchange factor activity			ovary(1)	1						TCTTTTTTGTCCGTCTGCAAA	0.443000													11	63					0	0	0.411799	0	0
EEPD1	80820	broad.mit.edu	37	7	36327301	36327301	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:36327301C>T	uc003tfa.2	+	6	1870	c.1230C>T	c.(1228-1230)CTC>CTT	p.L410L		NM_030636	NP_085139	Q7L9B9	EEPD1_HUMAN	endonuclease/exonuclease/phosphatase family	410					DNA repair		DNA binding				0						CCCTGACCCTCCTGGGGAGCG	0.547000													14	155					0	0	0.479597	0	0
OGDH	4967	broad.mit.edu	37	7	44715667	44715667	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:44715667C>T	uc003tln.2	+	9	1234	c.1125C>T	c.(1123-1125)TCC>TCT	p.S375S	OGDH_uc003tlm.2_Silent_p.S375S|OGDH_uc011kbx.1_Silent_p.S371S|OGDH_uc011kby.1_Silent_p.S225S|OGDH_uc003tlp.2_Silent_p.S386S|OGDH_uc011kbz.1_Silent_p.S170S|OGDH_uc003tlo.1_Silent_p.S208S	NM_002541	NP_002532	Q02218	ODO1_HUMAN	oxoglutarate dehydrogenase isoform 1 precursor	375					glycolysis|lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|mitochondrial membrane	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			upper_aerodigestive_tract(1)|ovary(1)	2					NADH(DB00157)	CCAACCCTTCCCACCTTGAGG	0.562000													20	164					0	0	0.608945	0	0
COBL	23242	broad.mit.edu	37	7	51096349	51096349	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:51096349G>A	uc003tpr.3	-	10	2629	c.2444C>T	c.(2443-2445)TCG>TTG	p.S815L	COBL_uc003tps.2_Missense_Mutation_p.S872L|COBL_uc011kcl.1_Missense_Mutation_p.S815L|COBL_uc003tpp.3_Missense_Mutation_p.S601L|COBL_uc003tpq.3_Missense_Mutation_p.S756L|COBL_uc003tpo.3_Missense_Mutation_p.S357L	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	815										skin(3)|ovary(2)	5	Glioma(55;0.08)					CTGCTGGGGCGATATTGGCTT	0.657000													5	92					0	0	0.184627	0	0
COBL	23242	broad.mit.edu	37	7	51258589	51258589	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:51258589C>T	uc003tpr.3	-	4	828	c.643G>A	c.(643-645)GAG>AAG	p.E215K	COBL_uc003tps.2_Missense_Mutation_p.E215K|COBL_uc011kcl.1_Missense_Mutation_p.E215K|COBL_uc010kzc.2_Missense_Mutation_p.E215K|COBL_uc003tpt.2_Missense_Mutation_p.E215K|COBL_uc003tpp.3_5'UTR|COBL_uc003tpq.3_Missense_Mutation_p.E131K	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	215										skin(3)|ovary(2)	5	Glioma(55;0.08)					ATCCCGAGCTCGTTCAGGGAC	0.592000													6	48					0	0	0.217242	0	0
ZNF716	441234	broad.mit.edu	37	7	57529114	57529114	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:57529114G>A	uc011kdi.1	+	4	1059	c.947G>A	c.(946-948)AGA>AAA	p.R316K		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						AACCACAAGAGAATTCATACT	0.408000													10	44					0	0	0.335167	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72339497	72339497	+	RNA	SNP	T	C	C	rs390732	by1000genomes	TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:72339497T>C	uc010lal.1	-	1		c.159A>G				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						TCCTCAGATTTGTCCCACCAC	0.582000													6	67					0	0	0.248553	0	0
LIMK1	3984	broad.mit.edu	37	7	73523279	73523279	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:73523279C>T	uc003uaa.1	+	10	1362	c.1197C>T	c.(1195-1197)TTC>TTT	p.F399F	RFC2_uc011kfa.1_Intron|LIMK1_uc010lbl.1_RNA|LIMK1_uc003uab.2_Silent_p.F365F|LIMK1_uc003uac.1_Silent_p.F191F	NM_002314	NP_002305	P53667	LIMK1_HUMAN	LIM domain kinase 1	399	Protein kinase.				actin cytoskeleton organization|axon guidance|negative regulation of ubiquitin-protein ligase activity|positive regulation of actin filament bundle assembly|positive regulation of axon extension|Rho protein signal transduction	cytosol|growth cone|nucleus	ATP binding|heat shock protein binding|protein serine/threonine kinase activity|zinc ion binding			stomach(2)|ovary(1)	3		Lung NSC(55;0.137)				TGCTCAAGTTCATCGGGGTGC	0.512000													20	75					0	0	0.575678	0	0
POM121C	100101267	broad.mit.edu	37	7	75066821	75066821	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:75066821G>A	uc010lde.1	-	5	1178	c.1178C>T	c.(1177-1179)TCC>TTC	p.S393F	POM121C_uc003udk.3_Missense_Mutation_p.S151F			A8CG34	P121C_HUMAN	Homo sapiens POM121-2 mRNA for nuclear pore membrane protein 121-2, partial cds.	393	Required for targeting to the nucleus and nuclear pore complex.|Pore side (Potential).|Ser-rich.				mRNA transport|protein transport|transmembrane transport	endoplasmic reticulum membrane|nuclear membrane|nuclear pore	protein binding				0						GGAGCTGTAGGAACTGGTAAT	0.478000													48	335					0	0	0.870114	0	0
PMS2L11	441263	broad.mit.edu	37	7	76631555	76631555	+	RNA	SNP	C	T	T	rs61737188	by1000genomes	TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:76631555C>T	uc003ufw.3	+	4		c.696C>T			PMS2L11_uc011kgn.1_RNA	NR_023383				Homo sapiens cDNA FLJ59034 complete cds, moderately similar to Protein deltex-2.												0						GGCAATCGGGCCCCTGGCTGT	0.607000													7	36					0	0	0.278610	0	0
MGC26647	219557	broad.mit.edu	37	7	88423665	88423665	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:88423665C>T	uc003ujv.2	-	2	774	c.592G>A	c.(592-594)GAT>AAT	p.D198N	ZNF804B_uc011khi.1_Intron	NM_152706	NP_689919	Q8TBZ9	CG062_HUMAN	hypothetical protein LOC219557	198											0	Esophageal squamous(14;0.00802)|all_hematologic(106;0.109)|Lung NSC(181;0.168)|all_lung(186;0.169)		STAD - Stomach adenocarcinoma(171;0.229)			TGTAAGTTATCGCCTGGTCCT	0.423000													10	134					0	0	0.387290	0	0
SAMD9	54809	broad.mit.edu	37	7	92733395	92733395	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:92733395G>A	uc003umf.2	-	3	2272	c.2016C>T	c.(2014-2016)TTC>TTT	p.F672F	SAMD9_uc003umg.2_Silent_p.F672F	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	672						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			TGAATTCAAGGAATTTATTTT	0.378000													16	135					0	0	0.479597	0	0
AGFG2	3268	broad.mit.edu	37	7	100162603	100162603	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:100162603C>T	uc003uvf.2	+	12	1571	c.1435C>T	c.(1435-1437)CCC>TCC	p.P479S	AGFG2_uc010lgy.2_3'UTR	NM_006076	NP_006067	O95081	AGFG2_HUMAN	ArfGAP with FG repeats 2	479					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			central_nervous_system(1)	1						AACCACCAACCCCTTCTTGTA	0.537000													26	363					0	0	0.729181	0	0
ZAN	7455	broad.mit.edu	37	7	100364790	100364790	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:100364790C>T	uc003uwj.2	+	25	4935	c.4770C>T	c.(4768-4770)CGC>CGT	p.R1590R	ZAN_uc003uwk.2_Silent_p.R1590R|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kkd.1_Silent_p.R167R	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	1590	Extracellular (Potential).|VWFD 2.				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			ACGAGAACCGCGGGGGGATCC	0.572000													14	63					0	0	0.520397	0	0
MUC17	140453	broad.mit.edu	37	7	100684190	100684190	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:100684190C>T	uc003uxp.1	+	3	9546	c.9493C>T	c.(9493-9495)CCA>TCA	p.P3165S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3165	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|51.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AGGAAGTACTCCATTAACATA	0.493000													79	828					0	0	0.870114	0	0
MUC17	140453	broad.mit.edu	37	7	100696311	100696311	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:100696311A>G	uc003uxp.1	+	10	13201	c.13148A>G	c.(13147-13149)AAC>AGC	p.N4383S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4383	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GAGACCTGTAACCAGGGCACC	0.597000													7	108					0	0	0.248553	0	0
PNPLA8	50640	broad.mit.edu	37	7	108128381	108128381	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:108128381G>A	uc003vff.1	-	10	2107	c.1700C>T	c.(1699-1701)ACC>ATC	p.T567I	PNPLA8_uc003vfg.1_RNA|PNPLA8_uc003vfh.1_Missense_Mutation_p.T567I|PNPLA8_uc003vfi.1_Missense_Mutation_p.T467I|PNPLA8_uc003vfj.1_Missense_Mutation_p.T567I|PNPLA8_uc003vfk.1_Missense_Mutation_p.T467I	NM_015723	NP_056538	Q9NP80	PLPL8_HUMAN	patatin-like phospholipase domain containing 8	567	Patatin.				fatty acid metabolic process|lipid catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|membrane fraction|perinuclear region of cytoplasm|peroxisomal membrane	ATP binding|calcium-independent phospholipase A2 activity|lysophospholipase activity			breast(2)	2						ATTTACTATGGTACTTACAGC	0.328000													5	59					0	0	0.217242	0	0
DOCK4	9732	broad.mit.edu	37	7	111430568	111430568	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:111430568G>A	uc003vfx.2	-	31	3529	c.3260C>T	c.(3259-3261)CCA>CTA	p.P1087L	DOCK4_uc011kmm.1_5'Flank|DOCK4_uc003vfw.2_Missense_Mutation_p.P528L|DOCK4_uc003vfy.2_Missense_Mutation_p.P1123L	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	1087					cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				ATGAAAAATTGGAATCATGAC	0.473000													4	59					0	0	0.150653	0	0
TNPO3	23534	broad.mit.edu	37	7	128615876	128615876	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:128615876G>A	uc003vol.1	-	17	2549	c.2175C>T	c.(2173-2175)CTC>CTT	p.L725L	TNPO3_uc010llx.1_Silent_p.L136L|TNPO3_uc003vom.1_Silent_p.L659L|TNPO3_uc010lly.1_Silent_p.L759L|TNPO3_uc010llz.1_Silent_p.L661L	NM_012470	NP_036602	Q9Y5L0	TNPO3_HUMAN	transportin 3	725					splicing factor protein import into nucleus	cytoplasm|nucleus	protein binding|receptor activity			ovary(2)|skin(2)|lung(1)	5						AAGATACCTGGAGCATGTCTA	0.483000													8	71					0	0	0.278610	0	0
CPA1	1357	broad.mit.edu	37	7	130025015	130025015	+	Silent	SNP	G	A	A	rs34843162	byFrequency	TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:130025015G>A	uc003vpx.2	+	8	888	c.816G>A	c.(814-816)TCG>TCA	p.S272S	CPA1_uc003vpw.2_Silent_p.S106S	NM_001868	NP_001859	P15085	CBPA1_HUMAN	carboxypeptidase A1 precursor	272					proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					ACCCCTGCTCGGAGACTTACC	0.552000													23	98					0	0	0.608945	0	0
CALD1	800	broad.mit.edu	37	7	134632371	134632371	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:134632371G>A	uc003vrz.2	+	8	2104	c.1645G>A	c.(1645-1647)GAA>AAA	p.E549K	CALD1_uc003vry.2_Missense_Mutation_p.E294K|CALD1_uc003vsa.2_Missense_Mutation_p.E320K|CALD1_uc003vsb.2_Missense_Mutation_p.E294K|CALD1_uc010lmm.2_Missense_Mutation_p.E320K|CALD1_uc011kpt.1_Missense_Mutation_p.E68K|CALD1_uc003vsc.2_Missense_Mutation_p.E314K|CALD1_uc003vsd.2_Missense_Mutation_p.E288K|CALD1_uc011kpu.1_Missense_Mutation_p.E299K|CALD1_uc011kpv.1_Missense_Mutation_p.E158K|CALD1_uc003vse.2_Missense_Mutation_p.E413K	NM_033138	NP_149129	Q05682	CALD1_HUMAN	caldesmon 1 isoform 1	549					cellular component movement|muscle contraction	cytosol|focal adhesion|myofibril	actin binding|calmodulin binding|myosin binding|tropomyosin binding				0						GACCGAGAGCGAAGAGTTCGA	0.398000													3	11					0	0	0.115264	0	0
CNOT4	4850	broad.mit.edu	37	7	135047828	135047828	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:135047828G>A	uc011kpy.1	-	11	2043	c.1951C>T	c.(1951-1953)CCA>TCA	p.P651S	CNOT4_uc003vss.2_Missense_Mutation_p.P577S|CNOT4_uc011kpz.1_Missense_Mutation_p.P648S|CNOT4_uc003vst.2_Missense_Mutation_p.P580S	NM_001008225	NP_001008226	O95628	CNOT4_HUMAN	CCR4-NOT transcription complex, subunit 4	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					nuclear-transcribed mRNA poly(A) tail shortening|protein autoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	nucleotide binding|protein binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding				0						GTCTGTGATGGAGCAGCGCTG	0.557000													19	232					0	0	0.557998	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				9	78					0	0	0.307466	0	0
OR6B1	135946	broad.mit.edu	37	7	143701497	143701497	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:143701497G>A	uc003wdt.1	+	1	408	c.408G>A	c.(406-408)ATG>ATA	p.M136I		NM_001005281	NP_001005281	O95007	OR6B1_HUMAN	olfactory receptor, family 6, subfamily B,	136	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.0783)					CAACCATAATGAGCCATGGGC	0.557000													11	130					0	0	0.361761	0	0
OR2A2	442361	broad.mit.edu	37	7	143807159	143807159	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:143807159C>T	uc011ktz.1	+	1	484	c.484C>T	c.(484-486)CTT>TTT	p.L162F		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	162	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					TGAAATTCTCCTTCTAAGGTT	0.527000													14	179					0	0	0.479597	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174830	150174830	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:150174830G>A	uc003whj.2	+	5	2290	c.1960G>A	c.(1960-1962)GAA>AAA	p.E654K		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	654	Potential.					endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		GTCCCAAGCCGAAAAACTCCT	0.463000													22	108					0	0	0.608945	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325530	150325530	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:150325530C>T	uc003whn.2	-	3	580	c.156G>A	c.(154-156)GGG>GGA	p.G52G	GIMAP6_uc003whm.2_Intron	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	52	GTP (Potential).						GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TTGCACTCTTCCCACTCCCTG	0.527000													85	492					0	0	0.870114	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439343	150439343	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:150439343G>A	uc003whr.1	+	3	468	c.116G>A	c.(115-117)GGG>GAG	p.G39E	GIMAP5_uc010lpu.2_5'UTR	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	39	Cytoplasmic (Potential).|GTP (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ACAGGCTGCGGGAAAAGTGCC	0.507000													6	126					0	0	0.248553	0	0
MLL3	58508	broad.mit.edu	37	7	151878339	151878339	+	Silent	SNP	T	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:151878339T>A	uc003wla.2	-	36	6825	c.6606A>T	c.(6604-6606)CCA>CCT	p.P2202P	MLL3_uc003wkz.2_Silent_p.P1263P	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	2202	Pro-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GATGAGCATATGGATCAGAAT	0.468000			N		medulloblastoma								8	104					0	0	0.278610	0	0
PTPRN2	5799	broad.mit.edu	37	7	157414169	157414169	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr7:157414169G>A	uc003wno.2	-	15	2350	c.2229C>T	c.(2227-2229)AAC>AAT	p.N743N	PTPRN2_uc003wnp.2_Silent_p.N726N|PTPRN2_uc003wnq.2_Silent_p.N714N|PTPRN2_uc003wnr.2_Silent_p.N705N|PTPRN2_uc011kwa.1_Silent_p.N766N	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	743	Cytoplasmic (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		TCTCCAGCCGGTTCTTGTTCT	0.612000													72	396					0	0	0.870114	0	0
PRSS55	203074	broad.mit.edu	37	8	10396092	10396092	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr8:10396092G>A	uc003wta.2	+	5	863	c.848G>A	c.(847-849)GGG>GAG	p.G283E	uc010lru.2_Intron|PRSS55_uc003wtb.2_Intron	NM_198464	NP_940866	Q6UWB4	PRS55_HUMAN	hypothetical protein LOC203074 precursor	283	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	serine-type endopeptidase activity			ovary(1)	1						AACACCCCAGGGATATACACC	0.547000													11	140					0	0	0.361761	0	0
RP1L1	94137	broad.mit.edu	37	8	10480138	10480138	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr8:10480138G>A	uc003wtc.2	-	2	803	c.574C>T	c.(574-576)CCT>TCT	p.P192S		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	192					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TGCTTCACAGGAAAGCGCAGG	0.522000													21	233					0	0	0.608945	0	0
PIWIL2	55124	broad.mit.edu	37	8	22141766	22141766	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr8:22141766C>T	uc003xbn.2	+	6	872	c.724C>T	c.(724-726)CAA>TAA	p.Q242*	PIWIL2_uc011kzf.1_Nonsense_Mutation_p.Q242*|PIWIL2_uc010ltv.2_Nonsense_Mutation_p.Q242*	NM_018068	NP_060538	Q8TC59	PIWL2_HUMAN	piwi-like 2	242					DNA methylation involved in gamete generation|gene silencing by RNA|germ-line stem cell maintenance|multicellular organismal development|oogenesis|piRNA metabolic process|positive regulation of translation|RNA 5'-end processing|spermatogenesis	chromatoid body|pi-body	piRNA binding			skin(1)	1				Colorectal(74;0.018)|COAD - Colon adenocarcinoma(73;0.0707)		AGCAGTTTATCAATATCATGT	0.358000													6	55					0	0	0.217242	0	0
STC1	6781	broad.mit.edu	37	8	23709002	23709002	+	Missense_Mutation	SNP	C	T	T	rs146703503		TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr8:23709002C>T	uc003xdw.1	-	3	588	c.304G>A	c.(304-306)GGG>AGG	p.G102R		NM_003155	NP_003146	P52823	STC1_HUMAN	stanniocalcin 1 precursor	102					cell surface receptor linked signaling pathway|cell-cell signaling|cellular calcium ion homeostasis		hormone activity			skin(3)|upper_aerodigestive_tract(1)	4		Prostate(55;0.055)|Breast(100;0.116)		Colorectal(74;0.0155)|COAD - Colon adenocarcinoma(73;0.0632)		GAGGTGACCCCGTTGGCGATG	0.517000													12	79					0	0	0.387290	0	0
ADAM28	10863	broad.mit.edu	37	8	24170996	24170996	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr8:24170996C>T	uc003xdy.2	+	6	562	c.479C>T	c.(478-480)CCT>CTT	p.P160L	ADAM28_uc003xdx.2_Missense_Mutation_p.P160L|ADAM28_uc011kzz.1_Intron|ADAM28_uc011laa.1_RNA	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	160					proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		AAGTATAACCCTGATGAAAAG	0.473000													17	131					0	0	0.520397	0	0
RAB11FIP1	80223	broad.mit.edu	37	8	37732480	37732480	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr8:37732480G>A	uc003xkm.1	-	3	1219	c.1175C>T	c.(1174-1176)TCT>TTT	p.S392F	RAB11FIP1_uc010lvz.1_Missense_Mutation_p.S240F|RAB11FIP1_uc003xkn.1_Missense_Mutation_p.S392F|RAB11FIP1_uc003xkl.1_5'Flank|RAB11FIP1_uc003xko.1_5'Flank|RAB11FIP1_uc003xkp.1_Missense_Mutation_p.S240F	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	392					protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			CAGGGTCATAGACTTCAAGGA	0.587000													13	109					0	0	0.411799	0	0
WHSC1L1	54904	broad.mit.edu	37	8	38187031	38187031	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr8:38187031G>A	uc003xli.2	-	6	1964	c.1446C>T	c.(1444-1446)TCC>TCT	p.S482S	WHSC1L1_uc011lbm.1_Silent_p.S482S|WHSC1L1_uc010lwe.2_Silent_p.S482S|WHSC1L1_uc003xlj.2_Silent_p.S482S	NM_023034	NP_075447	Q9BZ95	NSD3_HUMAN	WHSC1L1 protein isoform long	482					cell differentiation|cell growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome	histone-lysine N-methyltransferase activity|zinc ion binding	p.S482P(1)		breast(1)	1	Colorectal(12;0.000442)|Esophageal squamous(3;0.0725)	all_lung(54;0.00787)|Lung NSC(58;0.0295)|Hepatocellular(245;0.065)	Epithelial(3;3.12e-43)|all cancers(3;1.72e-38)|BRCA - Breast invasive adenocarcinoma(5;2.84e-27)|LUSC - Lung squamous cell carcinoma(2;2.79e-25)|Lung(2;5.03e-23)|COAD - Colon adenocarcinoma(9;0.0511)			GCATCGTAATGGAAGCTGGTA	0.488000			T	NUP98	AML								12	147					0	0	0.387290	0	0
PLEKHA2	59339	broad.mit.edu	37	8	38809722	38809722	+	Silent	SNP	C	T	T	rs112121731		TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr8:38809722C>T	uc003xmi.3	+	7	759	c.525C>T	c.(523-525)TCC>TCT	p.S175S	PLEKHA2_uc011lce.1_Silent_p.S125S	NM_021623	NP_067636	Q9HB19	PKHA2_HUMAN	pleckstrin homology domain containing, family A	175					positive regulation of cell-matrix adhesion	cytoplasm|nucleus|plasma membrane|protein complex	fibronectin binding|laminin binding				0		all_lung(54;0.0413)|Lung NSC(58;0.115)|Hepatocellular(245;0.152)	LUSC - Lung squamous cell carcinoma(45;4.68e-08)|COAD - Colon adenocarcinoma(9;0.235)			AGCCCGGGTCCCACACCATCC	0.592000													6	29					0	0	0.278610	0	0
SDR16C5	195814	broad.mit.edu	37	8	57228829	57228829	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr8:57228829C>T	uc003xsy.1	-	2	716	c.78G>A	c.(76-78)ATG>ATA	p.M26I	SDR16C5_uc010lyk.1_Missense_Mutation_p.M26I|SDR16C5_uc010lyl.1_Missense_Mutation_p.M26I	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	26	Helical; (Potential).				detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						AGGCAAAAATCATAGCCTCCA	0.448000													10	84					0	0	0.387290	0	0
PENK	5179	broad.mit.edu	37	8	57354403	57354403	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr8:57354403G>A	uc003xsz.2	-	2	313	c.232C>T	c.(232-234)CAA>TAA	p.Q78*	PENK_uc003xta.3_Nonsense_Mutation_p.Q78*	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	78					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			GTGCCATCTTGAGGAAGCTCT	0.483000													15	180					0	0	0.457914	0	0
TRPA1	8989	broad.mit.edu	37	8	72942158	72942158	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr8:72942158G>T	uc003xza.2	-	24	3090	c.2915C>A	c.(2914-2916)TCA>TAA	p.S972*	uc011lff.1_Intron|uc003xyy.2_Intron	NM_007332	NP_015628	O75762	TRPA1_HUMAN	ankyrin-like protein 1	972	Cytoplasmic (Potential).					integral to plasma membrane				ovary(4)|lung(1)|kidney(1)	6			Epithelial(68;0.223)		Menthol(DB00825)	CCTCTTCAATGATGCATGTTT	0.274000													11	70					1.08611e-07	1.09595e-07	0.387290	1	0
CA2	760	broad.mit.edu	37	8	86389376	86389376	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr8:86389376G>A	uc003ydk.2	+	6	715	c.535G>A	c.(535-537)GAT>AAT	p.D179N		NM_000067	NP_000058	P00918	CAH2_HUMAN	carbonic anhydrase II	179				DP -> AA (in Ref. 6; AAH11949).	one-carbon metabolic process	apical part of cell	carbonate dehydratase activity|zinc ion binding			central_nervous_system(1)	1					Acetazolamide(DB00819)|Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Brinzolamide(DB01194)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Dorzolamide(DB00869)|Ethinamate(DB01031)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Topiramate(DB00273)|Trichlormethiazide(DB01021)	CACTAACTTCGATCCTCGTGG	0.507000													21	238					0	0	0.592651	0	0
CNGB3	54714	broad.mit.edu	37	8	87645093	87645093	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr8:87645093G>A	uc003ydx.2	-	11	1253	c.1207C>T	c.(1207-1209)CGA>TGA	p.R403*	CNGB3_uc010maj.2_Nonsense_Mutation_p.R265*	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	403	Cytoplasmic (Potential).		R -> Q (in macular degeneration).		signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						ATTAAAGTTCGAACTGCCCAA	0.328000													4	33					0	0	0.184627	0	0
KIAA1429	25962	broad.mit.edu	37	8	95523926	95523926	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr8:95523926G>A	uc003ygo.1	-	13	2890	c.2877C>T	c.(2875-2877)GCC>GCT	p.A959A	KIAA1429_uc003ygp.2_Silent_p.A959A|KIAA1429_uc010maz.1_RNA	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	959					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			GCTGAATAACGGCAAGATTCC	0.328000													4	62					0	0	0.184627	0	0
FBXO43	286151	broad.mit.edu	37	8	101153451	101153451	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr8:101153451G>A	uc003yjd.2	-	2	1744	c.1031C>T	c.(1030-1032)TCA>TTA	p.S344L	FBXO43_uc003yje.2_Missense_Mutation_p.S310L|FBXO43_uc010mbp.1_Missense_Mutation_p.S344L	NM_001029860	NP_001025031	Q4G163	FBX43_HUMAN	F-box protein 43 isoform b	344					meiosis		zinc ion binding			kidney(1)|skin(1)	2	all_cancers(14;0.000139)|all_epithelial(15;2.84e-07)|Lung NSC(17;0.000274)|all_lung(17;0.000798)		Epithelial(11;1.17e-09)|all cancers(13;1.34e-07)|OV - Ovarian serous cystadenocarcinoma(57;3.82e-05)|STAD - Stomach adenocarcinoma(118;0.0957)			GGAATCTTCTGATTTCTCCAA	0.428000													16	116					0	0	0.479597	0	0
LRP12	29967	broad.mit.edu	37	8	105503461	105503461	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr8:105503461G>A	uc003yma.2	-	7	2115	c.2020C>T	c.(2020-2022)CCT>TCT	p.P674S	LRP12_uc003ymb.2_Missense_Mutation_p.P655S|LRP12_uc003ylz.2_Missense_Mutation_p.P80S	NM_013437	NP_038465	Q9Y561	LRP12_HUMAN	low density lipoprotein-related protein 12	674	Cytoplasmic (Potential).				endocytosis|regulation of growth	coated pit|integral to plasma membrane	low-density lipoprotein receptor activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(57;1.21e-06)|STAD - Stomach adenocarcinoma(118;0.229)			TGAGGCAAAGGAGCTGCAACC	0.478000													5	68					0	0	0.184627	0	0
FLJ43860	389690	broad.mit.edu	37	8	142517247	142517247	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr8:142517247C>T	uc003ywi.2	-	1	84	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	1							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			ACTGCCTGTCCATGGTTGGGG	0.642000													12	65					0	0	0.411799	0	0
PLEC	5339	broad.mit.edu	37	8	144991228	144991228	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr8:144991228G>A	uc003zaf.1	-	32	13342	c.13172C>T	c.(13171-13173)TCC>TTC	p.S4391F	PLEC_uc003zab.1_Missense_Mutation_p.S4254F|PLEC_uc003zac.1_Missense_Mutation_p.S4258F|PLEC_uc003zad.2_Missense_Mutation_p.S4254F|PLEC_uc003zae.1_Missense_Mutation_p.S4222F|PLEC_uc003zag.1_Missense_Mutation_p.S4232F|PLEC_uc003zah.2_Missense_Mutation_p.S4240F|PLEC_uc003zaj.2_Missense_Mutation_p.S4281F	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	4391	Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GGGGTAGGAGGAGGAGGATCC	0.687000													5	73					0	0	0.248553	0	0
RECQL4	9401	broad.mit.edu	37	8	145736915	145736915	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr8:145736915C>T	uc003zdj.2	-	22	3558	c.3526G>A	c.(3526-3528)GTG>ATG	p.V1176M		NM_004260	NP_004251	O94761	RECQ4_HUMAN	RecQ protein-like 4	1176					DNA duplex unwinding|DNA recombination|DNA repair	cytoplasm|nucleus	ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|DNA strand annealing activity|zinc ion binding			breast(2)|lung(1)|skin(1)	4	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			TGCCCGTACACCTGGGCCGGG	0.682000			N|F|S			osteosarcoma|skin basal and sqamous cell		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	RAPADILINO_syndrome|Rothmund-Thomson_syndrome|Baller-Gerold_syndrome				4	48					0	0	0.217242	0	0
KIAA1539	80256	broad.mit.edu	37	9	35107964	35107964	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr9:35107964C>T	uc003zwl.2	-	3	633	c.308G>A	c.(307-309)GGC>GAC	p.G103D	KIAA1539_uc003zwm.2_Missense_Mutation_p.G103D|KIAA1539_uc003zwn.2_Intron|KIAA1539_uc003zwo.2_Missense_Mutation_p.G103D|KIAA1539_uc003zwp.1_Missense_Mutation_p.G103D|KIAA1539_uc010mkk.1_Intron	NM_025182	NP_079458	Q7L5A3	K1539_HUMAN	hypothetical protein LOC80256	103						nucleus				ovary(2)	2	all_epithelial(49;0.217)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			TCCCTCTGGGCCTAAGAGCCC	0.627000													13	93					0	0	0.457914	0	0
RORB	6096	broad.mit.edu	37	9	77300481	77300481	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr9:77300481C>T	uc004aji.2	+	10	1409	c.1360C>T	c.(1360-1362)CCT>TCT	p.P454S	RORB_uc004ajh.2_Missense_Mutation_p.P443S	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	454	Ligand-binding (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						TACACTGTTTCCTCCGTTATA	0.453000													17	141					0	0	0.539581	0	0
TRPM6	140803	broad.mit.edu	37	9	77400934	77400934	+	Silent	SNP	G	A	A	rs149732972		TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr9:77400934G>A	uc004ajl.1	-	21	3013	c.2775C>T	c.(2773-2775)TTC>TTT	p.F925F	TRPM6_uc004ajk.1_Silent_p.F920F|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajm.1_Silent_p.F211F	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	925	Helical; (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						ATCGAAGGACGAAGCCAGCTG	0.478000													27	175					0	0	0.681144	0	0
HEMGN	55363	broad.mit.edu	37	9	100692686	100692686	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr9:100692686C>T	uc004axy.2	-	3	1099	c.991G>A	c.(991-993)GAA>AAA	p.E331K	HEMGN_uc004axz.2_Missense_Mutation_p.E331K	NM_197978	NP_932095	Q9BXL5	HEMGN_HUMAN	hemogen	331					cell differentiation|multicellular organismal development					ovary(1)	1		Acute lymphoblastic leukemia(62;0.0559)				ACAATAATTTCGTTACATGTT	0.358000													20	170					0	0	0.575678	0	0
OR1N1	138883	broad.mit.edu	37	9	125288863	125288863	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr9:125288863G>A	uc004bmn.1	-	1	710	c.710C>T	c.(709-711)TCC>TTC	p.S237F		NM_012363	NP_036495	Q8NGS0	OR1N1_HUMAN	olfactory receptor, family 1, subfamily N,	237	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)|breast(1)|skin(1)	3						ACTGCAGGTGGAAAAGGCCTT	0.537000													6	94					0	0	0.217242	0	0
OR1N2	138882	broad.mit.edu	37	9	125316132	125316133	+	Silent	DNP	CC	AT	AT			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr9:125316132_125316133CC>AT	uc011lyx.1	+	1	684_685	c.684_685CC>AT	c.(682-687)CTCCTG>CTATTG	p.228_229LL>LL		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	228_229	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						CTGTTCCCCTCCTGCTGATCGT	0.505000													31	220					0	0	0.115264	0	0
NAIF1	203245	broad.mit.edu	37	9	130828906	130828906	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr9:130828906C>T	uc004bta.2	-	1	694	c.475G>A	c.(475-477)GCC>ACC	p.A159T	NAIF1_uc004bsz.2_Intron|SLC25A25_uc004btb.2_5'Flank	NM_197956	NP_931045	Q69YI7	NAIF1_HUMAN	nuclear apoptosis inducing factor 1	159					apoptosis|induction of apoptosis	nucleus					0						GCTGCGGTGGCCGAGGGTCCG	0.657000													18	55					0	0	0.520397	0	0
BAT2L1	84726	broad.mit.edu	37	9	134350764	134350764	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr9:134350764G>A	uc004can.3	+	15	3303	c.3248G>A	c.(3247-3249)GGA>GAA	p.G1083E	BAT2L1_uc010mzj.1_Missense_Mutation_p.G666E|BAT2L1_uc004cao.3_Missense_Mutation_p.G441E	NM_013318	NP_037450	Q5JSZ5	PRC2B_HUMAN	HLA-B associated transcript 2-like	1083							protein binding				0						CCTGCTGGCGGAAATGGGAGC	0.657000													5	28					0	0	0.184627	0	0
PNPLA7	375775	broad.mit.edu	37	9	140358635	140358635	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr9:140358635G>A	uc004cnf.2	-	27	3431	c.3094C>T	c.(3094-3096)CCT>TCT	p.P1032S	C9orf167_uc011mew.1_Intron|PNPLA7_uc004cnd.1_Missense_Mutation_p.P298S|PNPLA7_uc004cne.1_Missense_Mutation_p.P298S|PNPLA7_uc011mfa.1_Missense_Mutation_p.P440S|PNPLA7_uc010ncj.1_Missense_Mutation_p.P1057S	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	1032	Patatin.				lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		GCGAAATAAGGAATCCACAGG	0.672000													4	56					0	0	0.150653	0	0
EHMT1	79813	broad.mit.edu	37	9	140693307	140693307	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr9:140693307G>A	uc011mfc.1	+	17	2585	c.2548G>A	c.(2548-2550)GGC>AGC	p.G850S		NM_024757	NP_079033	Q9H9B1	EHMT1_HUMAN	euchromatic histone-lysine N-methyltransferase 1	850	ANK 4.				DNA methylation|embryo development|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			breast(2)|pancreas(1)	3	all_cancers(76;0.164)			OV - Ovarian serous cystadenocarcinoma(145;0.000183)|Epithelial(140;0.000728)		TGCCAAGAAAGGCCACTACGA	0.532000													22	157					0	0	0.608945	0	0
Unknown	0	broad.mit.edu	37	MT	9316	9316	+	RNA	SNP	T	C	C			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrM:9316T>C	uc011mfi.1	+	1		c.654T>C			uc004cov.3_5'Flank|uc004cow.1_5'Flank					Homo sapiens mRNA for OK/SW-CL.16, complete cds.																		GTGATTTCACTTCCACTCCAT	0.502000													2	6					0	0	0.115264	0	0
MXRA5	25878	broad.mit.edu	37	X	3228032	3228032	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:3228032C>T	uc004crg.3	-	7	8369	c.8212G>A	c.(8212-8214)GAG>AAG	p.E2738K		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2738	Ig-like C2-type 12.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GGGGTGGGCTCGCTGGTGATC	0.592000													6	100					0	0	0.217242	0	0
NLGN4X	57502	broad.mit.edu	37	X	5811248	5811248	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:5811248G>A	uc010ndh.2	-	6	2562	c.2061C>T	c.(2059-2061)TTC>TTT	p.F687F	NLGN4X_uc004crp.2_Silent_p.F707F|NLGN4X_uc004crq.2_Silent_p.F687F|NLGN4X_uc010ndi.2_Silent_p.F724F|NLGN4X_uc004crr.2_Silent_p.F687F|NLGN4X_uc010ndj.2_Silent_p.F687F	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	687	Helical; (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						AGATGTTGAGGAAGAGGAGCG	0.507000													16	180					0	0	0.520397	0	0
FANCB	2187	broad.mit.edu	37	X	14882838	14882838	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:14882838C>T	uc004cwg.1	-	3	1063	c.795G>A	c.(793-795)CTG>CTA	p.L265L	FANCB_uc004cwh.1_Silent_p.L265L	NM_001018113	NP_001018123	Q8NB91	FANCB_HUMAN	Fanconi anemia complementation group B	265					DNA repair	nucleoplasm				lung(1)	1	Hepatocellular(33;0.183)					GAAATGAAATCAGCTGATTCT	0.393000								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				7	87					0	0	0.248553	0	0
PTCHD1	139411	broad.mit.edu	37	X	23411377	23411377	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:23411377G>A	uc004dal.3	+	3	1750	c.1742G>A	c.(1741-1743)GGG>GAG	p.G581E		NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	581					cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						TACACCAAGGGGTTTGTGCGG	0.393000													21	182					0	0	0.608945	0	0
DMD	1756	broad.mit.edu	37	X	32466592	32466592	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:32466592C>T	uc004dda.1	-	27	4011	c.3767G>A	c.(3766-3768)GGG>GAG	p.G1256E	DMD_uc004dcz.2_Missense_Mutation_p.G1133E|DMD_uc004dcy.1_Missense_Mutation_p.G1252E|DMD_uc004ddb.1_Missense_Mutation_p.G1248E|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	1256	Spectrin 8.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				CTTGCATTTCCCATTCAGCCT	0.378000													21	124					0	0	0.608945	0	0
FAM47C	442444	broad.mit.edu	37	X	37027232	37027232	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:37027232C>T	uc004ddl.1	+	1	763	c.749C>T	c.(748-750)CCT>CTT	p.P250L		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	250										ovary(3)	3						CGCCCAGAGCCTCCCAAGACT	0.617000													21	179					0	0	0.624587	0	0
PAGE1	8712	broad.mit.edu	37	X	49455912	49455912	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:49455912C>T	uc004dom.2	-	4	365	c.232G>A	c.(232-234)GGT>AGT	p.G78S		NM_003785	NP_003776	O75459	GAGB1_HUMAN	P antigen family, member 1	78					cellular defense response					skin(1)	1	Ovarian(276;0.236)					GTATCAGGACCATCTCCAAGC	0.468000													7	95					0	0	0.248553	0	0
HUWE1	10075	broad.mit.edu	37	X	53564540	53564540	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:53564540G>A	uc004dsp.2	-	78	12516	c.12114C>T	c.(12112-12114)TCC>TCT	p.S4038S	HUWE1_uc004dsn.2_Silent_p.S2846S|HUWE1_uc004dsq.1_Silent_p.S338S	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	4038	HECT.				base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						TTTCTTCGGGGGATTTGCGAT	0.547000													4	43					0	0	0.150653	0	0
FGD1	2245	broad.mit.edu	37	X	54496781	54496781	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:54496781G>A	uc004dtg.2	-	4	1503	c.769C>T	c.(769-771)CCC>TCC	p.P257S	FGD1_uc011moi.1_Missense_Mutation_p.P15S	NM_004463	NP_004454	P98174	FGD1_HUMAN	faciogenital dysplasia protein	257	Pro-rich.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|organ morphogenesis|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|nucleus|plasma membrane|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|skin(2)|central_nervous_system(1)	6						TCACCCTCGGGGAGCTGGGGC	0.667000													5	31					0	0	0.184627	0	0
USP51	158880	broad.mit.edu	37	X	55513971	55513971	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:55513971C>T	uc004dun.1	-	2	1481	c.1402G>A	c.(1402-1404)GAT>AAT	p.D468N	USP51_uc011moo.1_Missense_Mutation_p.D172N	NM_201286	NP_958443	Q70EK9	UBP51_HUMAN	ubiquitin specific protease 51	468					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3						CCACCACTATCATCTTTGCTG	0.468000													13	169					0	0	0.411799	0	0
LAS1L	81887	broad.mit.edu	37	X	64737875	64737875	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:64737875A>G	uc004dwa.1	-	12	1991	c.1919T>C	c.(1918-1920)GTT>GCT	p.V640A	LAS1L_uc004dwc.1_Missense_Mutation_p.V623A|LAS1L_uc004dwd.1_Missense_Mutation_p.V581A|LAS1L_uc004dvy.1_Missense_Mutation_p.V153A|LAS1L_uc004dvz.1_Missense_Mutation_p.V153A	NM_031206	NP_112483	Q9Y4W2	LAS1L_HUMAN	LAS1-like	640						MLL1 complex|nucleolus	protein binding			ovary(3)|large_intestine(1)	4						ACCTGAGCTAACCTGCCATGC	0.532000													7	56					0	0	0.307466	0	0
AWAT1	158833	broad.mit.edu	37	X	69455673	69455673	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:69455673G>A	uc004dxy.2	+	2	225	c.184G>A	c.(184-186)GGT>AGT	p.G62S		NM_001013579	NP_001013597	Q58HT5	AWAT1_HUMAN	wax synthase 1	62					lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	long-chain-alcohol O-fatty-acyltransferase activity			ovary(3)	3						CCCAGAGCGAGGTAAGACTCA	0.522000													18	127					0	0	0.539581	0	0
KIF4A	24137	broad.mit.edu	37	X	69521799	69521799	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:69521799C>T	uc004dyg.2	+	6	693	c.566C>T	c.(565-567)TCC>TTC	p.S189F	KIF4A_uc010nkw.2_Missense_Mutation_p.S189F|KIF4A_uc004dyf.1_Missense_Mutation_p.S189F	NM_012310	NP_036442	O95239	KIF4A_HUMAN	kinesin family member 4	189	Kinesin-motor.				anterograde axon cargo transport|axon guidance|blood coagulation|organelle organization	chromosome|cytosol|midbody|nuclear matrix|spindle microtubule	ATP binding|DNA binding|microtubule motor activity|protein binding			ovary(4)	4						GATACTGTTTCCTGTTTGGAA	0.438000													21	132					0	0	0.624587	0	0
NCRNA00182	100302692	broad.mit.edu	37	X	73251430	73251430	+	Splice_Site	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:73251430C>T	uc010nlq.1	-	6		c.940_splice	c.e6+1		NCRNA00183_uc004ebp.2_Intron					Homo sapiens cDNA FLJ33139 fis, clone UTERU1000109.												0						AACCAACTTACCATTGCTCTG	0.527000													9	71					0	0	0.361761	0	0
MAGEE2	139599	broad.mit.edu	37	X	75004218	75004218	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:75004218C>T	uc004ecj.1	-	1	854	c.669G>A	c.(667-669)AGG>AGA	p.R223R		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	223	MAGE 1.									ovary(1)|skin(1)	2						TGAGGAGGTTCCTTGTGTTCC	0.493000													9	140					0	0	0.335167	0	0
ATRX	546	broad.mit.edu	37	X	76937319	76937319	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:76937319C>T	uc004ecp.3	-	9	3661	c.3429G>A	c.(3427-3429)AAG>AAA	p.K1143K	ATRX_uc004ecq.3_Silent_p.K1105K|ATRX_uc004eco.3_Silent_p.K928K|ATRX_uc004ecr.2_Silent_p.K1075K|ATRX_uc010nlx.1_Silent_p.K1114K|ATRX_uc010nly.1_Silent_p.K1088K	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	1143					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TAGTATTTCTCTTTGAACTTA	0.318000			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						9	117					0	0	0.307466	0	0
PGK1	5230	broad.mit.edu	37	X	77380915	77380915	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:77380915C>T	uc004ecz.3	+	10	1378	c.1206C>T	c.(1204-1206)CTC>CTT	p.L402L	PGK1_uc010nlz.2_RNA|PGK1_uc011mqq.1_Silent_p.L374L	NM_000291	NP_000282	P00558	PGK1_HUMAN	phosphoglycerate kinase 1	402					gluconeogenesis|glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			upper_aerodigestive_tract(1)|ovary(1)	2						GTTTGGAGCTCCTGGAAGGTG	0.512000													7	68					0	0	0.248553	0	0
H2BFWT	158983	broad.mit.edu	37	X	103267817	103267817	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:103267817C>T	uc004elr.2	-	1	440	c.416G>A	c.(415-417)CGG>CAG	p.R139Q		NM_001002916	NP_001002916	Q7Z2G1	H2BWT_HUMAN	H2B histone family, member W, testis-specific	139					nucleosome assembly	nuclear membrane|nucleosome	DNA binding			ovary(1)	1						CACAGCCATCCGGGTCTCCCA	0.642000													6	70					0	0	0.248553	0	0
COL4A5	1287	broad.mit.edu	37	X	107849982	107849982	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:107849982G>A	uc004enz.1	+	29	2457	c.2255G>A	c.(2254-2256)GGA>GAA	p.G752E	COL4A5_uc011mso.1_Missense_Mutation_p.G752E|COL4A5_uc004eob.1_Missense_Mutation_p.G360E	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	752	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						GGTGAACCAGGATTTGCATTA	0.478000									Alport_syndrome_with_Diffuse_Leiomyomatosis				10	165					0	0	0.387290	0	0
KLHL13	90293	broad.mit.edu	37	X	117032999	117032999	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:117032999C>T	uc004eql.2	-	7	1902	c.1840G>A	c.(1840-1842)GAT>AAT	p.D614N	KLHL13_uc004eqk.2_Missense_Mutation_p.D563N|KLHL13_uc011mtn.1_Missense_Mutation_p.D454N|KLHL13_uc011mto.1_Missense_Mutation_p.D608N|KLHL13_uc011mtp.1_Missense_Mutation_p.D616N|KLHL13_uc004eqm.2_Missense_Mutation_p.D563N|KLHL13_uc011mtq.1_Missense_Mutation_p.D598N	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	614	Kelch 6.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						TGCCATTCATCTTTATCTGGA	0.428000													9	188					0	0	0.307466	0	0
LAMP2	3920	broad.mit.edu	37	X	119565286	119565286	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:119565286G>A	uc004est.3	-	9	1305	c.1125C>T	c.(1123-1125)TTC>TTT	p.F375F	LAMP2_uc004ess.3_Intron|LAMP2_uc011mtz.1_Intron	NM_002294	NP_002285	P13473	LAMP2_HUMAN	lysosomal-associated membrane protein 2 isoform	375	Lumenal (Potential).|Second lumenal domain.				platelet activation|platelet degranulation	endosome membrane|integral to membrane|late endosome|lysosomal membrane|membrane fraction|plasma membrane|platelet dense granule membrane				ovary(1)	1						TGGGCACAAGGAAGTTGTCGT	0.443000													22	281					0	0	0.624587	0	0
ODZ1	10178	broad.mit.edu	37	X	123517535	123517535	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:123517535C>T	uc004euj.2	-	29	7289	c.7225G>A	c.(7225-7227)GAA>AAA	p.E2409K	ODZ1_uc011muj.1_Missense_Mutation_p.E2415K|ODZ1_uc010nqy.2_Missense_Mutation_p.E2416K	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	2409	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TAGTTATTTTCAAAGGAGTAG	0.363000													9	129					0	0	0.307466	0	0
ODZ1	10178	broad.mit.edu	37	X	123615768	123615768	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:123615768C>T	uc004euj.2	-	21	3806	c.3742G>A	c.(3742-3744)GAA>AAA	p.E1248K	ODZ1_uc011muj.1_Missense_Mutation_p.E1254K|ODZ1_uc010nqy.2_Missense_Mutation_p.E1255K	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1248	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TAGAGTGATTCAGACACAGGG	0.418000													15	135					0	0	0.457914	0	0
IGSF1	3547	broad.mit.edu	37	X	130417102	130417102	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:130417102G>A	uc004ewd.2	-	6	1042	c.804C>T	c.(802-804)TCC>TCT	p.S268S	IGSF1_uc004ewe.3_Silent_p.S257S|IGSF1_uc004ewf.2_Silent_p.S248S	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	268	Ig-like C2-type 3.|Extracellular (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						TGTGGTAAAAGGACTTCTCCA	0.428000													9	128					0	0	0.307466	0	0
HTATSF1	27336	broad.mit.edu	37	X	135593294	135593294	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:135593294G>A	uc004ezw.2	+	10	1812	c.1390G>A	c.(1390-1392)GAA>AAA	p.E464K	HTATSF1_uc004ezx.2_Missense_Mutation_p.E464K	NM_001163280	NP_001156752	O43719	HTSF1_HUMAN	HIV-1 Tat specific factor 1	464	Asp/Glu-rich (acidic).|Mediates interaction with the P-TEFb complex.				regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|viral genome replication	nucleus	nucleotide binding|protein binding|RNA binding			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					AGGCTGCCCTGAAAAAGAATC	0.468000													7	129					0	0	0.278610	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995253	140995253	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:140995253C>T	uc004fbt.2	+	4	2349	c.2063C>T	c.(2062-2064)TCC>TTC	p.S688F	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	688							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GGGGAGGATTCCCTGTCTCCT	0.572000										HNSCC(15;0.026)			28	211					0	0	0.693898	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995659	140995659	+	Silent	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:140995659G>A	uc004fbt.2	+	4	2755	c.2469G>A	c.(2467-2469)TCG>TCA	p.S823S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	823							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CCACTTCATCGAGTCTTTCCC	0.557000										HNSCC(15;0.026)			51	370					0	0	0.870114	0	0
MAMLD1	10046	broad.mit.edu	37	X	149638712	149638712	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:149638712C>T	uc004fee.1	+	3	943	c.867C>T	c.(865-867)CTC>CTT	p.L289L	MAMLD1_uc011mxt.1_Silent_p.L251L|MAMLD1_uc011mxu.1_Silent_p.L264L|MAMLD1_uc011mxv.1_Silent_p.L264L|MAMLD1_uc011mxw.1_Silent_p.L216L	NM_005491	NP_005482	Q13495	MAMD1_HUMAN	mastermind-like domain containing 1	289					male gonad development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	Acute lymphoblastic leukemia(192;6.56e-05)					AGGCCATGCTCCCTGTCGCTC	0.582000													9	157					0	0	0.361761	0	0
CNGA2	1260	broad.mit.edu	37	X	150912638	150912638	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:150912638G>A	uc004fey.1	+	7	1887	c.1663G>A	c.(1663-1665)GAT>AAT	p.D555N		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	555	cAMP (By similarity).|Cytoplasmic (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GTCCAAGGATGATCTTATGGA	0.493000													25	252					0	0	0.667858	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303222	151303222	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:151303222G>A	uc004ffk.2	-	5	1279	c.871C>T	c.(871-873)CCT>TCT	p.P291S	MAGEA10_uc004ffl.2_Missense_Mutation_p.P291S	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	291	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					TACCGTGCAGGATCACTGCCA	0.522000													24	251					0	0	0.667858	0	0
ARHGAP4	393	broad.mit.edu	37	X	153186238	153186238	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:153186238G>A	uc004fjk.1	-	5	565	c.523C>T	c.(523-525)CAC>TAC	p.H175Y	ARHGAP4_uc011mzf.1_Missense_Mutation_p.H152Y|ARHGAP4_uc004fjl.1_Missense_Mutation_p.H175Y|ARHGAP4_uc010nup.1_RNA	NM_001666	NP_001657	P98171	RHG04_HUMAN	Rho GTPase activating protein 4 isoform 2	175	Potential.				apoptosis|cytoskeleton organization|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|Rho protein signal transduction	cytosol|focal adhesion|nucleus	Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			central_nervous_system(1)	1	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CTCTCCATGTGATATGCCTGG	0.677000													12	116					0	0	0.411799	0	0
HCFC1	3054	broad.mit.edu	37	X	153224030	153224030	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:153224030G>A	uc004fjp.2	-	10	2321	c.1793C>T	c.(1792-1794)TCG>TTG	p.S598L		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	598					cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CATGACTGGCGAGGAGGCCAC	0.602000													27	257					0	0	0.717897	0	0
IL9R	3581	broad.mit.edu	37	X	155233163	155233163	+	Silent	SNP	C	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chrX:155233163C>T	uc004fnv.1	+	3	371	c.192C>T	c.(190-192)ATC>ATT	p.I64I	IL9R_uc010nvn.2_Silent_p.I43I|IL9R_uc004fnu.1_Silent_p.I111I	NM_002186	NP_002177	Q01113	IL9R_HUMAN	interleukin 9 receptor precursor	64	Extracellular (Potential).				cell proliferation	extracellular space|integral to plasma membrane	interleukin-9 receptor activity				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TTCTCAGGATCGATTGCCACT	0.597000													15	115					0	0	0.500413	0	0
ADAM6	8755	broad.mit.edu	37	14	106805656	106805656	+	RNA	DEL	G	-	-	rs112628447		TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr14:106805656delG	uc010tyt.1	-	359		c.13633delC			uc001ysw.1_5'Flank					Parts of antibodies, mostly variable regions.												0						TTCTTGCACAGGAGGTCCAGG	0.502													9	24	---	---	---	---					
IRS1	3667	broad.mit.edu	37	2	227660301	227660302	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EB-A3XD-01A-22D-A23B-08	TCGA-EB-A3XD-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d657fd9-e1e3-4102-b1a6-543d277be378	a23d40b1-745b-4c37-b706-b3758b030ecb	g.chr2:227660301_227660302insT	uc002voh.3	-	1	3205_3206	c.3153_3154insA	c.(3151-3156)GCAGAGfs	p.A1051fs		NM_005544	NP_005535	P35568	IRS1_HUMAN	insulin receptor substrate 1	1051_1052					fibroblast growth factor receptor signaling pathway|glucose homeostasis|insulin receptor signaling pathway|negative regulation of insulin receptor signaling pathway|negative regulation of insulin secretion|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of insulin receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity	caveola|cytosol|insulin receptor complex|microsome|nucleus	insulin receptor binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase binding|protein kinase C binding|SH2 domain binding|transmembrane receptor protein tyrosine kinase adaptor activity			lung(5)|central_nervous_system(4)|ovary(2)|pancreas(1)	12		Renal(207;0.023)|all_lung(227;0.0994)|all_hematologic(139;0.118)|Esophageal squamous(248;0.23)		Epithelial(121;3.03e-11)|all cancers(144;2.42e-08)|Lung(261;0.00712)|LUSC - Lung squamous cell carcinoma(224;0.0137)		GCAGCCAGCTCTGCTGCCCCTT	0.668													9	77	---	---	---	---					
