Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
KIF1B	23095	broad.mit.edu	37	1	10434438	10434438	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:10434438C>T	uc001aqx.3	+	46	5213	c.5011C>T	c.(5011-5013)CCA>TCA	p.P1671S	KIF1B_uc001aqw.3_Missense_Mutation_p.P1625S|KIF1B_uc001aqy.2_Missense_Mutation_p.P1645S|KIF1B_uc001aqz.2_Missense_Mutation_p.P1671S|KIF1B_uc001ara.2_Missense_Mutation_p.P1631S|KIF1B_uc001arb.2_Missense_Mutation_p.P1657S	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	1671					anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		TCAGATTGTCCCAGCTGTGGA	0.418													53	102					0	0	1	0	0
CNKSR1	10256	broad.mit.edu	37	1	26514781	26514781	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:26514781C>T	uc001bln.3	+	17	1590	c.1532C>T	c.(1531-1533)CCC>CTC	p.P511L	CNKSR1_uc001blm.3_Missense_Mutation_p.P504L|CNKSR1_uc009vsd.2_Missense_Mutation_p.P246L|CNKSR1_uc009vse.2_Missense_Mutation_p.P246L|CNKSR1_uc001blo.2_Missense_Mutation_p.P246L|CATSPER4_uc010oey.1_5'Flank|CATSPER4_uc010oez.1_5'Flank|CATSPER4_uc009vsf.2_5'Flank	NM_006314	NP_006305	Q969H4	CNKR1_HUMAN	connector enhancer of kinase suppressor of Ras	511					Rho protein signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cell cortex|cell-cell junction	protein binding, bridging			lung(1)|kidney(1)	2		Colorectal(325;3.46e-05)|all_lung(284;0.000116)|Lung NSC(340;0.000154)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.72e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00072)|BRCA - Breast invasive adenocarcinoma(304;0.000959)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00823)|READ - Rectum adenocarcinoma(331;0.0649)		GGCCGGGCCCCCCCACCCCGA	0.537													15	40					0	0	1	0	0
LIN28A	79727	broad.mit.edu	37	1	26751942	26751942	+	Missense_Mutation	SNP	G	A	A	rs141345172		TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:26751942G>A	uc001bmj.2	+	3	491	c.377G>A	c.(376-378)GGA>GAA	p.G126E	LIN28A_uc001bmi.1_RNA	NM_024674	NP_078950	Q9H9Z2	LN28A_HUMAN	lin-28 homolog	126					miRNA catabolic process|pre-miRNA processing|regulation of transcription, DNA-dependent|RNA 3'-end processing|stem cell maintenance	cytoplasmic mRNA processing body|nucleolus|stress granule	DNA binding|zinc ion binding			central_nervous_system(1)	1						CGGCCAAAAGGAAAGAGCATG	0.512													44	81					0	0	1	0	0
SPOCD1	90853	broad.mit.edu	37	1	32259423	32259423	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:32259423G>A	uc001bts.1	-	12	2517	c.2459C>T	c.(2458-2460)GCC>GTC	p.A820V	SPOCD1_uc001btr.1_5'Flank|SPOCD1_uc001btt.2_Missense_Mutation_p.A125V|SPOCD1_uc001btu.2_Missense_Mutation_p.A820V|SPOCD1_uc001btv.2_Missense_Mutation_p.A313V	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	820					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		TTGGCTTAGGGCTTTCTGGAA	0.582													71	134					0	0	1	0	0
ZSCAN20	7579	broad.mit.edu	37	1	33954165	33954165	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:33954165C>T	uc001bxj.3	+	3	685	c.518C>T	c.(517-519)TCC>TTC	p.S173F	ZSCAN20_uc001bxk.2_Missense_Mutation_p.S173F|ZSCAN20_uc009vui.2_Missense_Mutation_p.S173F	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	173					viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				GAGGGACAGTCCCAGAAGAAG	0.537													13	36					0	0	1	0	0
DLGAP3	58512	broad.mit.edu	37	1	35370203	35370203	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:35370203C>T	uc001byc.2	-	1	782	c.782G>A	c.(781-783)TGG>TAG	p.W261*		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	261					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				ATCGGAACTCCACCAGCCTGT	0.587													54	97					0	0	1	0	0
MACF1	23499	broad.mit.edu	37	1	39823056	39823056	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:39823056C>T	uc010oiu.1	+	9	6885	c.6754C>T	c.(6754-6756)CAA>TAA	p.Q2252*	MACF1_uc010ois.1_Nonsense_Mutation_p.Q1750*|MACF1_uc001cda.1_Nonsense_Mutation_p.Q1658*|MACF1_uc001cdc.1_Nonsense_Mutation_p.Q837*|MACF1_uc001cdb.1_Nonsense_Mutation_p.Q837*	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	3817					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GGCCCGTCACCAAGAATTGCT	0.468													25	38					0	0	1	0	0
MACF1	23499	broad.mit.edu	37	1	39904963	39904963	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:39904963G>A	uc010oiu.1	+	37	13698	c.13567G>A	c.(13567-13569)GAT>AAT	p.D4523N	MACF1_uc010ois.1_Missense_Mutation_p.D4021N	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	6088	Spectrin 10.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GGATAAATTGGATCAAATGGT	0.378													9	14					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	41976146	41976146	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:41976146C>T	uc001cgz.3	-	9	8410	c.7197G>A	c.(7195-7197)GAG>GAA	p.E2399E	HIVEP3_uc001cha.3_Silent_p.E2398E|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	2399					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GAACCCTGTCCTCAGGCTGAT	0.612													6	9					0	0	1	0	0
PTPRF	5792	broad.mit.edu	37	1	44083579	44083579	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:44083579C>T	uc001cjr.2	+	25	4708	c.4368C>T	c.(4366-4368)TCC>TCT	p.S1456S	PTPRF_uc001cjs.2_Silent_p.S1447S|PTPRF_uc001cju.2_Silent_p.S845S|PTPRF_uc009vwt.2_Silent_p.S1016S|PTPRF_uc001cjv.2_Silent_p.S927S|PTPRF_uc001cjw.2_Silent_p.S682S	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1456	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				AGGAGAAGTCCCGGGTGAGGC	0.632													5	14					0	0	1	0	0
AKR1A1	10327	broad.mit.edu	37	1	46034249	46034249	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:46034249C>T	uc001cod.2	+	7	1109	c.645C>T	c.(643-645)TCC>TCT	p.S215S	AKR1A1_uc001coe.2_Silent_p.S215S|AKR1A1_uc001cof.2_Intron|AKR1A1_uc001cog.2_RNA	NM_006066	NP_006057	P14550	AK1A1_HUMAN	aldo-keto reductase family 1, member A1	215	NADP (By similarity).				glucose metabolic process		alditol:NADP+ 1-oxidoreductase activity|electron carrier activity|protein binding				0	Acute lymphoblastic leukemia(166;0.155)					CTTTGGGCTCCTCTGATCGTG	0.542													26	42					0	0	1	0	0
DMBX1	127343	broad.mit.edu	37	1	46977981	46977981	+	Missense_Mutation	SNP	C	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:46977981C>A	uc001cpx.2	+	4	979	c.964C>A	c.(964-966)CAG>AAG	p.Q322K	DMBX1_uc001cpw.2_Missense_Mutation_p.Q317K	NM_147192	NP_671725	Q8NFW5	DMBX1_HUMAN	diencephalon/mesencephalon homeobox 1 isoform b	322					brain development|developmental growth|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GTCCTACTACCAGTCCCTGTC	0.687													24	31					3.10358e-05	3.12575e-05	1	1	0
PCSK9	255738	broad.mit.edu	37	1	55524260	55524260	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:55524260G>A	uc001cyf.1	+	9	1734	c.1443G>A	c.(1441-1443)GAG>GAA	p.E481E	PCSK9_uc010oom.1_RNA	NM_174936	NP_777596	Q8NBP7	PCSK9_HUMAN	proprotein convertase subtilisin/kexin type 9	481					cellular response to insulin stimulus|cellular response to starvation|cholesterol homeostasis|cholesterol metabolic process|kidney development|liver development|low-density lipoprotein particle receptor catabolic process|lysosomal transport|negative regulation of catalytic activity|negative regulation of low-density lipoprotein particle clearance|negative regulation of receptor recycling|neuron differentiation|positive regulation of neuron apoptosis|positive regulation of receptor internalization|protein autoprocessing|regulation of receptor activity	extracellular space|late endosome|lysosome|perinuclear region of cytoplasm	apolipoprotein receptor binding|identical protein binding|low-density lipoprotein particle receptor binding|serine-type endopeptidase activity|very-low-density lipoprotein particle receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4						CCCCAGATGAGGAGCTGCTGA	0.567													28	38					0	0	1	0	0
PRKAA2	5563	broad.mit.edu	37	1	57157079	57157079	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:57157079C>T	uc001cyk.3	+	3	320	c.249C>T	c.(247-249)ATC>ATT	p.I83I		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	83	Protein kinase.				carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						ACCAGGTGATCAGCACTCCAA	0.313													11	8					0	0	1	0	0
PRKAA2	5563	broad.mit.edu	37	1	57171779	57171779	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:57171779C>T	uc001cyk.3	+	8	1379	c.1308C>T	c.(1306-1308)TAC>TAT	p.Y436Y		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	436					carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						TGAATGCATACCATCTTCGTG	0.303													5	15					0	0	1	0	0
DNAJC6	9829	broad.mit.edu	37	1	65871563	65871563	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:65871563C>T	uc001dcd.1	+	16	2231	c.2067C>T	c.(2065-2067)TCC>TCT	p.S689S	DNAJC6_uc010opc.1_Silent_p.S676S|DNAJC6_uc001dce.1_Silent_p.S746S	NM_014787	NP_055602	O75061	AUXI_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 6	689	Pro-rich.				cellular membrane organization|post-Golgi vesicle-mediated transport	cytosol	heat shock protein binding|protein tyrosine phosphatase activity|SH3 domain binding			large_intestine(1)|lung(1)|ovary(1)	3						GTAGTTCTTCCTTTGCCAGCA	0.488													33	53					0	0	1	0	0
LPHN2	23266	broad.mit.edu	37	1	82433875	82433875	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:82433875G>A	uc001dit.3	+	13	2645	c.2464G>A	c.(2464-2466)GAA>AAA	p.E822K	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.E822K|LPHN2_uc001div.2_Missense_Mutation_p.E822K|LPHN2_uc009wcd.2_Missense_Mutation_p.E822K|LPHN2_uc001diw.2_Missense_Mutation_p.E406K|LPHN2_uc009wce.1_5'Flank	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	835	Extracellular (Potential).|GPS.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		GGCCCACAGGGAAATTGCAGT	0.428													16	45					0	0	1	0	0
CLCA4	22802	broad.mit.edu	37	1	87045037	87045037	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:87045037G>A	uc009wcs.2	+	13	2167	c.2123G>A	c.(2122-2124)GGG>GAG	p.G708E	CLCA4_uc009wct.2_Missense_Mutation_p.G471E|CLCA4_uc009wcu.2_Missense_Mutation_p.G528E	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	708						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		TTTAATGCAGGGGAAATTGAA	0.398													20	27					0	0	1	0	0
CLCA3P	9629	broad.mit.edu	37	1	87100124	87100124	+	RNA	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:87100124C>T	uc010osh.1	+	1		c.166C>T				NR_024604				Synthetic construct DNA, clone: pF1KB7225, Homo sapiens CLCA3 gene for chloride channel, calcium activated, family member 3, without stop codon, in Flexi system.												0						AAAACTCATTCAAAACATAAA	0.318													8	18					0	0	1	0	0
LRIG2	9860	broad.mit.edu	37	1	113636988	113636988	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:113636988C>T	uc001edf.1	+	5	741	c.543C>T	c.(541-543)ACC>ACT	p.T181T	LRIG2_uc009wgn.1_Silent_p.T78T	NM_014813	NP_055628	O94898	LRIG2_HUMAN	leucine-rich repeats and immunoglobulin-like	181	LRR 5.|Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane				ovary(3)	3	Lung SC(450;0.246)	all_cancers(81;1.56e-05)|all_epithelial(167;2.62e-05)|all_lung(203;0.000665)|Lung NSC(69;0.000986)		Lung(183;0.0279)|Colorectal(144;0.0885)|COAD - Colon adenocarcinoma(174;0.134)|all cancers(265;0.139)|Epithelial(280;0.143)|LUSC - Lung squamous cell carcinoma(189;0.15)		GAATAACCACCTTGGAGGCTG	0.323													6	18					0	0	1	0	0
PTPN22	26191	broad.mit.edu	37	1	114372220	114372220	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:114372220C>T	uc001eds.2	-	18	2374	c.2244G>A	c.(2242-2244)AGG>AGA	p.R748R	PTPN22_uc009wgq.2_Silent_p.R693R|PTPN22_uc010owo.1_Silent_p.R504R|PTPN22_uc001edt.2_Intron|PTPN22_uc009wgr.2_Silent_p.R748R|PTPN22_uc009wgs.2_Silent_p.R621R	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	748					negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTACCTTACTCCTTGTGAAAC	0.378													13	11					0	0	1	0	0
AMPD1	270	broad.mit.edu	37	1	115222915	115222915	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:115222915C>T	uc001efe.1	-	6	816	c.732G>A	c.(730-732)ATG>ATA	p.M244I	AMPD1_uc001eff.1_Missense_Mutation_p.M240I	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	244					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	GTAAAAAATTCATATCGTCTA	0.398													19	48					0	0	1	0	0
SYCP1	6847	broad.mit.edu	37	1	115489880	115489880	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:115489880C>T	uc001efr.2	+	27	2470	c.2261C>T	c.(2260-2262)TCC>TTC	p.S754F	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.S754F|SYCP1_uc009wgw.2_Intron	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	754	Potential.				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		ATTGAACTATCCAATCTCAAA	0.308													8	16					0	0	1	0	0
SYCP1	6847	broad.mit.edu	37	1	115523998	115523998	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:115523998G>A	uc001efr.2	+	29	2633	c.2424G>A	c.(2422-2424)TGG>TGA	p.W808*	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Nonsense_Mutation_p.W808*|SYCP1_uc009wgw.2_Nonsense_Mutation_p.W783*	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	808					cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AAATTTATTGGAAATTGGATT	0.303													16	39					0	0	1	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144880851	144880851	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:144880851G>A	uc001elw.3	-	26	4068	c.3777C>T	c.(3775-3777)TCC>TCT	p.S1259S	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Silent_p.S1215S|PDE4DIP_uc001elv.3_Silent_p.S266S	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1259					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		GCTTCACCAAGGATTCACCTG	0.527			T	PDGFRB	MPD								28	158					0	0	1	0	0
FMO5	2330	broad.mit.edu	37	1	146658627	146658627	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:146658627C>T	uc001epi.2	-	9	1843	c.1454G>A	c.(1453-1455)CGA>CAA	p.R485Q	FMO5_uc001eph.3_Intron|FMO5_uc001epj.2_3'UTR	NM_001461	NP_001452	P49326	FMO5_HUMAN	flavin containing monooxygenase 5 isoform 1	485						integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			ovary(3)	3	all_hematologic(923;0.0487)					GATAGCTTTTCGAGCCCCATC	0.493													21	38					0	0	1	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059700	152059700	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:152059700C>T	uc001ezo.1	-	3	523	c.458G>A	c.(457-459)GGA>GAA	p.G153E		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	153							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			TCTGTTATTTCCAACTGCTCC	0.463													24	40					0	0	1	0	0
GBA	2629	broad.mit.edu	37	1	155209525	155209525	+	Missense_Mutation	SNP	C	G	G			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:155209525C>G	uc001fjh.2	-	4	486	c.336G>C	c.(334-336)CAG>CAC	p.Q112H	RAG1AP1_uc010pey.1_Intron|GBA_uc010pfw.1_Intron|GBA_uc010pfx.1_Intron|GBA_uc001fji.2_Missense_Mutation_p.Q112H|GBA_uc001fjj.2_Missense_Mutation_p.Q112H|GBA_uc001fjk.2_Missense_Mutation_p.Q112H|GBA_uc001fjl.2_Missense_Mutation_p.Q112H|GBA_uc010pfy.1_Missense_Mutation_p.Q25H|GBA_uc009wqk.1_Missense_Mutation_p.Q25H	NM_000157	NP_000148	P04062	GLCM_HUMAN	glucocerebrosidase precursor	112					carbohydrate metabolic process|cell death|cellular response to tumor necrosis factor|ceramide biosynthetic process|glucosylceramide catabolic process|lysosome organization|negative regulation of interleukin-6 production|negative regulation of MAP kinase activity|positive regulation of protein dephosphorylation|sphingosine biosynthetic process|termination of signal transduction	lysosomal lumen|lysosomal membrane	cation binding|glucosylceramidase activity|receptor binding			ovary(1)|skin(1)	2	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)		Alglucerase(DB00088)|Imiglucerase(DB00053)	TCTGGAACTTCTGTTCTGGCT	0.512									Gaucher_disease_type_I				23	52					0	0	1	0	0
GON4L	54856	broad.mit.edu	37	1	155746198	155746198	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:155746198G>A	uc001flz.2	-	16	2263	c.2166C>T	c.(2164-2166)ACC>ACT	p.T722T	GON4L_uc001fly.1_Silent_p.T722T|GON4L_uc009wrh.1_Silent_p.T722T|GON4L_uc001fma.1_Silent_p.T722T|GON4L_uc001fmb.3_5'UTR|GON4L_uc001fmc.2_Silent_p.T722T|GON4L_uc001fmd.3_Silent_p.T722T|GON4L_uc009wri.2_Silent_p.T308T|GON4L_uc009wrj.1_Intron|GON4L_uc001fme.2_Silent_p.T550T	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	722					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					GAAATATCCTGGTGGTAGTGG	0.423													24	19					0	0	1	0	0
GON4L	54856	broad.mit.edu	37	1	155784129	155784129	+	Silent	SNP	A	G	G			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:155784129A>G	uc001flz.2	-	9	1370	c.1273T>C	c.(1273-1275)TTA>CTA	p.L425L	GON4L_uc001fly.1_Silent_p.L425L|GON4L_uc009wrh.1_Silent_p.L425L|GON4L_uc001fma.1_Silent_p.L425L|GON4L_uc001fmc.2_Silent_p.L425L|GON4L_uc001fmd.3_Silent_p.L425L|GON4L_uc009wri.2_Silent_p.L11L|GON4L_uc001fme.2_Silent_p.L253L|GON4L_uc001fmf.2_Silent_p.L119L	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	425					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					ACCTCTGATAATATGCCACTC	0.378													23	58					0	0	1	0	0
SEMA4A	64218	broad.mit.edu	37	1	156124379	156124379	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:156124379C>T	uc001fnl.2	+	2	114	c.10C>T	c.(10-12)CCA>TCA	p.P4S	SEMA4A_uc009wrq.2_Missense_Mutation_p.P4S|SEMA4A_uc001fnm.2_Missense_Mutation_p.P4S|SEMA4A_uc001fnn.2_Intron|SEMA4A_uc001fno.2_Missense_Mutation_p.P4S	NM_022367	NP_071762	Q9H3S1	SEM4A_HUMAN	semaphorin B precursor	4					axon guidance	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.158)					CATGGCCCTCCCAGCCCTGGG	0.667													5	17					0	0	1	0	0
OR10Z1	128368	broad.mit.edu	37	1	158576534	158576534	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:158576534C>T	uc010pio.1	+	1	306	c.306C>T	c.(304-306)TTC>TTT	p.F102F		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	102	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					CCCAGATGTTCTTTTCTGCCT	0.557													62	116					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158592916	158592916	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:158592916C>T	uc001fst.1	-	43	6176	c.5977G>A	c.(5977-5979)GAC>AAC	p.D1993N		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1993	Spectrin 19.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					ATCAGTTTGTCCTTCAGGTCA	0.517													112	225					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158632735	158632735	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:158632735C>T	uc001fst.1	-	17	2420	c.2221G>A	c.(2221-2223)GAT>AAT	p.D741N		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	741	Spectrin 8.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TCCACCTGATCCTAAGGGAGA	0.433													9	29					0	0	1	0	0
SLAMF8	56833	broad.mit.edu	37	1	159802912	159802912	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:159802912A>G	uc001fue.3	+	3	824	c.614A>G	c.(613-615)AAC>AGC	p.N205S		NM_020125	NP_064510	Q9P0V8	SLAF8_HUMAN	SLAM family member 8 precursor	205	Ig-like C2-type.|Extracellular (Potential).					integral to membrane					0	all_hematologic(112;0.0597)					ATTGTCTCCAACCCTGTCAGC	0.547													28	63					0	0	1	0	0
IGSF9	57549	broad.mit.edu	37	1	159900142	159900142	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:159900142C>T	uc001fur.2	-	15	2099	c.1901G>A	c.(1900-1902)AGG>AAG	p.R634K	IGSF9_uc001fuq.2_Missense_Mutation_p.R618K|IGSF9_uc001fup.2_5'UTR	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	634	Fibronectin type-III 2.|Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			CCGGGGTGTCCTCACTGCCAC	0.672													62	104					0	0	1	0	0
ATP1A2	477	broad.mit.edu	37	1	160098530	160098530	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:160098530C>T	uc001fvc.2	+	9	1238	c.1106C>T	c.(1105-1107)TCC>TTC	p.S369F	ATP1A2_uc001fvb.2_Missense_Mutation_p.S369F|ATP1A2_uc010piz.1_Missense_Mutation_p.S214F|ATP1A2_uc001fvd.2_Missense_Mutation_p.S105F|ATP1A2_uc009wtg.1_Missense_Mutation_p.S57F	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	369	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			GGCTCCACGTCCACCATCTGC	0.602													45	85					0	0	1	0	0
LY9	4063	broad.mit.edu	37	1	160769865	160769865	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:160769865C>T	uc001fwu.2	+	2	497	c.447C>T	c.(445-447)TTC>TTT	p.F149F	LY9_uc001fwt.2_Silent_p.F149F|LY9_uc010pjs.1_Silent_p.F149F|LY9_uc001fwv.2_Silent_p.F149F|LY9_uc001fww.2_Silent_p.F149F|LY9_uc001fwx.2_Silent_p.F149F|LY9_uc001fwy.1_Silent_p.F51F	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	149	Extracellular (Potential).|Ig-like V-type 1.				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			TCACCCTGTTCGTCTATGGTG	0.308													19	40					0	0	1	0	0
DUSP27	92235	broad.mit.edu	37	1	167097407	167097408	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:167097407_167097408GG>AA	uc001geb.1	+	5	3039_3040	c.3039_3040GG>AA	c.(3037-3042)AGGGAG>AGAAAG	p.E1014K		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	1014	Ser-rich.				protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						CCTCCACCAGGGAGGGCAGAGA	0.554													20	42					0	0	1	0	0
FMO3	2328	broad.mit.edu	37	1	171077327	171077327	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:171077327G>A	uc001ghi.2	+	5	703	c.592G>A	c.(592-594)GAT>AAT	p.D198N	FMO3_uc001ghh.2_Missense_Mutation_p.D198N|FMO3_uc010pmb.1_Missense_Mutation_p.D178N|FMO3_uc010pmc.1_Missense_Mutation_p.D135N	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	198			D -> E.		xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TTCGGGCTGTGATATTGCCAC	0.498													18	52					0	0	1	0	0
ANKRD45	339416	broad.mit.edu	37	1	173616054	173616054	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:173616054C>T	uc001gja.1	-	3	488	c.427G>A	c.(427-429)GAA>AAA	p.E143K		NM_198493	NP_940895	Q5TZF3	ANR45_HUMAN	ankyrin repeat domain 45	159											0						GCCCTTTCTTCCCGGAAGTTC	0.473													39	59					0	0	1	0	0
SLC45A3	85414	broad.mit.edu	37	1	205632615	205632615	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:205632615G>A	uc001hda.1	-	3	643	c.304C>T	c.(304-306)CTC>TTC	p.L102F	SLC45A3_uc010prn.1_5'Flank|SLC45A3_uc010pro.1_5'UTR|SLC45A3_uc010prp.1_Intron|ELK4_uc010prq.1_Intron	NM_033102	NP_149093	Q96JT2	S45A3_HUMAN	prostein	102	Helical; Name=3; (Potential).				transmembrane transport	integral to membrane			SLC45A3/BRAF(2)	ovary(2)|prostate(2)	4	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0194)			CTTGGGATGAGAAAGAGGCTC	0.677			T	ETV1|ETV5|ELK4|ERG	prostate 								19	35					0	0	1	0	0
SLC26A9	115019	broad.mit.edu	37	1	205899127	205899127	+	Missense_Mutation	SNP	T	G	G			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:205899127T>G	uc001hdq.2	-	6	724	c.610A>C	c.(610-612)ATC>CTC	p.I204L	SLC26A9_uc001hdo.2_5'Flank|SLC26A9_uc001hdp.2_Missense_Mutation_p.I204L	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	204	Helical; (Potential).					integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			AAGCCCCGGATGAAGGACTCG	0.577													22	36					0	0	1	0	0
PLXNA2	5362	broad.mit.edu	37	1	208224727	208224727	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:208224727G>A	uc001hgz.2	-	16	3793	c.3035C>T	c.(3034-3036)TCC>TTC	p.S1012F		NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	1012	Extracellular (Potential).|IPT/TIG 2.				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		AAGGCCATTGGATGATGGGGG	0.567													16	25					0	0	1	0	0
DTL	51514	broad.mit.edu	37	1	212241963	212241963	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:212241963T>A	uc009xdc.2	+	10	1154	c.840T>A	c.(838-840)GAT>GAA	p.D280E	DTL_uc010ptb.1_Missense_Mutation_p.D238E|DTL_uc001hiz.3_Missense_Mutation_p.D9E	NM_016448	NP_057532	Q9NZJ0	DTL_HUMAN	denticleless homolog	280	WD 5.				DNA replication|G2/M transition DNA damage checkpoint|protein monoubiquitination|protein polyubiquitination|response to UV|translesion synthesis|ubiquitin-dependent protein catabolic process	centrosome|Cul4A-RING ubiquitin ligase complex|Cul4B-RING ubiquitin ligase complex|nuclear membrane	protein binding				0				OV - Ovarian serous cystadenocarcinoma(81;0.00796)|all cancers(67;0.0385)|Epithelial(68;0.102)		TGATTTTGGATTCCACTGGCT	0.363													10	25					0	0	1	0	0
PPP2R5A	5525	broad.mit.edu	37	1	212532071	212532071	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:212532071G>A	uc001hjb.2	+	12	1844	c.1270G>A	c.(1270-1272)GAA>AAA	p.E424K	PPP2R5A_uc010ptd.1_Missense_Mutation_p.E365K	NM_006243	NP_006234	Q15172	2A5A_HUMAN	protein phosphatase 2, regulatory subunit B	424					negative regulation of establishment of protein localization in plasma membrane|negative regulation of lipid kinase activity|positive regulation of protein dephosphorylation|signal transduction	chromosome, centromeric region|cytoplasm|nucleus|protein phosphatase type 2A complex	kinase binding|protein phosphatase type 2A regulator activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0125)|all cancers(67;0.029)|Epithelial(68;0.154)|GBM - Glioblastoma multiforme(131;0.155)		AACCCTAATGGAAATGAATGG	0.348													13	22					0	0	1	0	0
KCTD3	51133	broad.mit.edu	37	1	215792296	215792296	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:215792296C>T	uc001hks.2	+	16	1925	c.1631C>T	c.(1630-1632)TCC>TTC	p.S544F	KCTD3_uc001hkt.2_Missense_Mutation_p.S544F|KCTD3_uc010pub.1_Missense_Mutation_p.S442F|KCTD3_uc009xdn.2_Missense_Mutation_p.S268F	NM_016121	NP_057205	Q9Y597	KCTD3_HUMAN	potassium channel tetramerisation domain	544	WD 5.					voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			ovary(3)	3				all cancers(67;0.0164)|OV - Ovarian serous cystadenocarcinoma(81;0.019)|GBM - Glioblastoma multiforme(131;0.0862)|Epithelial(68;0.13)		TGTGAGGGATCCAGTAGGATG	0.453													23	45					0	0	1	0	0
C1orf65	164127	broad.mit.edu	37	1	223568258	223568258	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:223568258G>A	uc001hoa.2	+	1	1544	c.1441G>A	c.(1441-1443)GAG>AAG	p.E481K		NM_152610	NP_689823	Q8N715	CA065_HUMAN	hypothetical protein LOC164127	481	Potential.									central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0704)		GGCCCAGAAGGAGGAAGAGCA	0.592													23	42					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228495135	228495135	+	Silent	SNP	G	C	C			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:228495135G>C	uc009xez.1	+	46	12413	c.12369G>C	c.(12367-12369)ACG>ACC	p.T4123T	OBSCN_uc001hsn.2_Silent_p.T4123T	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4123	Ig-like 42.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AGGGGGCCACGCGGGAGCTGC	0.657													8	12					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237758892	237758892	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:237758892G>A	uc001hyl.1	+	34	4651	c.4531G>A	c.(4531-4533)GTG>ATG	p.V1511M		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1511	Cytoplasmic (By similarity).|B30.2/SPRY 3.|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TGGCTGTGTGGTGGATGCTGC	0.517													18	34					0	0	1	0	0
RGS7	6000	broad.mit.edu	37	1	241262011	241262011	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:241262011G>A	uc001hyv.2	-	3	460	c.130C>T	c.(130-132)CGT>TGT	p.R44C	RGS7_uc010pyh.1_Missense_Mutation_p.R18C|RGS7_uc010pyj.1_5'UTR|RGS7_uc001hyu.2_Missense_Mutation_p.R44C|RGS7_uc009xgn.1_Missense_Mutation_p.R44C|RGS7_uc001hyw.2_Missense_Mutation_p.R44C	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	44	DEP.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			TTGACCGTACGAATAGGAATT	0.358													9	19					0	0	1	0	0
OR14I1	401994	broad.mit.edu	37	1	248845138	248845138	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:248845138G>A	uc001ieu.1	-	1	468	c.468C>T	c.(466-468)GTC>GTT	p.V156V		NM_001004734	NP_001004734	A6ND48	O14I1_HUMAN	olfactory receptor, family 14, subfamily I,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGCCAGTGTGGACGGCTGCGT	0.552													12	37					0	0	1	0	0
AKR1C1	1645	broad.mit.edu	37	10	5009132	5009132	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr10:5009132C>T	uc001iho.2	+	8	1107	c.266C>T	c.(265-267)TCC>TTC	p.S89F	AKR1E2_uc001ihl.1_Intron|AKR1C2_uc010qan.1_Intron|AKR1C3_uc001ihr.2_Intron|AKR1C1_uc009xhx.2_Missense_Mutation_p.S89F|AKR1C1_uc001ihq.2_Missense_Mutation_p.S89F	NM_001353	NP_001344	Q04828	AK1C1_HUMAN	aldo-keto reductase family 1, member C1	89					bile acid and bile salt transport|bile acid metabolic process|cholesterol homeostasis|intestinal cholesterol absorption|protein homooligomerization|response to organophosphorus|xenobiotic metabolic process	cytosol	17-alpha,20-alpha-dihydroxypregn-4-en-3-one dehydrogenase activity|aldo-keto reductase (NADP) activity|androsterone dehydrogenase (B-specific) activity|bile acid binding|indanol dehydrogenase activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity			ovary(2)	2					NADH(DB00157)	TGGTGCAATTCCCATCGACCA	0.393													13	12					0	0	1	0	0
FAM21B	55747	broad.mit.edu	37	10	47948829	47948829	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr10:47948829C>T	uc009xni.2	+	29	3738	c.3738C>T	c.(3736-3738)CCC>CCT	p.P1246P	FAM21B_uc001jep.3_Silent_p.P1120P|FAM21B_uc001jeq.3_Silent_p.P313P	NM_018232	NP_060702	Q5SNT6	FA21B_HUMAN	hypothetical protein LOC55747	1246					retrograde transport, endosome to Golgi	early endosome membrane|WASH complex				ovary(1)	1						TTGATGATCCCCTGAATGCCT	0.478													20	8					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	56106231	56106231	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr10:56106231C>T	uc001jju.1	-	6	883	c.488G>A	c.(487-489)GGT>GAT	p.G163D	PCDH15_uc010qhq.1_Missense_Mutation_p.G168D|PCDH15_uc010qhr.1_Missense_Mutation_p.G163D|PCDH15_uc010qhs.1_Missense_Mutation_p.G168D|PCDH15_uc010qht.1_Missense_Mutation_p.G163D|PCDH15_uc010qhu.1_Missense_Mutation_p.G163D|PCDH15_uc001jjv.1_Missense_Mutation_p.G141D|PCDH15_uc010qhv.1_Missense_Mutation_p.G163D|PCDH15_uc010qhw.1_Missense_Mutation_p.G163D|PCDH15_uc010qhx.1_Missense_Mutation_p.G163D|PCDH15_uc010qhy.1_Missense_Mutation_p.G168D|PCDH15_uc010qhz.1_Missense_Mutation_p.G163D|PCDH15_uc010qia.1_Missense_Mutation_p.G141D|PCDH15_uc010qib.1_Missense_Mutation_p.G141D|PCDH15_uc001jjw.2_Missense_Mutation_p.G163D	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	163	Extracellular (Potential).|Cadherin 2.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TATTGTGGTACCAACTGGAGT	0.333										HNSCC(58;0.16)			29	13					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61815503	61815503	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr10:61815503C>T	uc001jky.2	-	42	13170	c.12978G>A	c.(12976-12978)ATG>ATA	p.M4326I	ANK3_uc001jkw.2_Missense_Mutation_p.M950I|ANK3_uc009xpa.2_Missense_Mutation_p.M950I|ANK3_uc001jkx.2_Missense_Mutation_p.M994I|ANK3_uc010qih.1_Missense_Mutation_p.M1817I|ANK3_uc001jkz.3_Missense_Mutation_p.M1810I|ANK3_uc001jkv.2_Missense_Mutation_p.M349I	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4326					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TCATCTTTTTCATACTGACAG	0.463													78	51					0	0	1	0	0
MYST4	23522	broad.mit.edu	37	10	76789152	76789152	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr10:76789152G>A	uc001jwn.1	+	18	5063	c.4570G>A	c.(4570-4572)GAT>AAT	p.D1524N	MYST4_uc001jwo.1_Missense_Mutation_p.D1232N|MYST4_uc001jwp.1_Missense_Mutation_p.D1341N	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	1524					histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					CAAGGAAGTCGATACAGAGTT	0.552			T	CREBBP	AML								33	19					0	0	1	0	0
CDHR1	92211	broad.mit.edu	37	10	85970835	85970835	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr10:85970835G>A	uc001kcv.2	+	13	1399	c.1399G>A	c.(1399-1401)GAC>AAC	p.D467N	CDHR1_uc001kcw.2_Missense_Mutation_p.D467N|CDHR1_uc009xst.2_Intron|CDHR1_uc001kcx.2_5'Flank	NM_033100	NP_149091	Q96JP9	CDHR1_HUMAN	protocadherin 21 precursor	467	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion		calcium ion binding|receptor activity			ovary(1)	1						GGACACCAATGACAATGTCCC	0.577													53	34					0	0	1	0	0
GRID1	2894	broad.mit.edu	37	10	87628917	87628917	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr10:87628917G>A	uc001kdl.1	-	6	902	c.801C>T	c.(799-801)ATC>ATT	p.I267I	GRID1_uc009xsu.1_RNA	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	267	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	CCAGATCCAGGATCTCCGGGT	0.507										Multiple Myeloma(13;0.14)			34	23					0	0	1	0	0
CYP26C1	340665	broad.mit.edu	37	10	94828174	94828174	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr10:94828174C>T	uc010qns.1	+	6	1289	c.1289C>T	c.(1288-1290)CCA>CTA	p.P430L	CYP26C1_uc009xud.2_RNA	NM_183374	NP_899230	Q6V0L0	CP26C_HUMAN	cytochrome P450, family 26, subfamily C,	430					anterior/posterior pattern formation|central nervous system development|negative regulation of retinoic acid receptor signaling pathway|neural crest cell development|organelle fusion|retinoic acid catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			central_nervous_system(1)	1		Colorectal(252;0.122)				GGCTTCGATCCAGAGCGCTTC	0.682													21	15					0	0	1	0	0
CYP2C19	1557	broad.mit.edu	37	10	96541623	96541623	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr10:96541623C>T	uc010qnz.1	+	5	688	c.688C>T	c.(688-690)CAT>TAT	p.H230Y	CYP2C19_uc009xus.1_Missense_Mutation_p.H95Y|CYP2C19_uc010qny.1_Missense_Mutation_p.H208Y	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	230					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	CCCGGGAACCCATAACAAATT	0.303													6	6					0	0	1	0	0
LOC729020	729020	broad.mit.edu	37	10	105005796	105005796	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr10:105005796G>A	uc009xxi.2	+	1	153	c.43G>A	c.(43-45)GAC>AAC	p.D15N	uc001kwr.2_Intron	NM_001143909	NP_001137381	Q2QD12	Q2QD12_HUMAN	rcRPE protein	15					carbohydrate metabolic process		ribulose-phosphate 3-epimerase activity				0						CCTCAACAGCGACCTGGCCAA	0.562													17	28					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123844332	123844332	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr10:123844332G>A	uc001lfv.2	+	4	2677	c.2317G>A	c.(2317-2319)GAA>AAA	p.E773K	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.E773K|TACC2_uc010qtv.1_Missense_Mutation_p.E773K	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	773						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GTCGAGACAGGAATTTCATGC	0.612													45	45					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124380872	124380872	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr10:124380872G>A	uc001lgk.1	+	41	5303	c.5197G>A	c.(5197-5199)GAA>AAA	p.E1733K	DMBT1_uc001lgl.1_Missense_Mutation_p.E1723K|DMBT1_uc001lgm.1_Missense_Mutation_p.E1105K|DMBT1_uc009xzz.1_Missense_Mutation_p.E1733K|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_Missense_Mutation_p.E436K|DMBT1_uc009yac.1_Missense_Mutation_p.E47K	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1733	SRCR 13.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TGGCCATCACGAAGACGCTGG	0.557													42	36					0	0	1	0	0
RIC8A	60626	broad.mit.edu	37	11	209918	209918	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:209918C>T	uc001log.2	+	3	969	c.644C>T	c.(643-645)TCC>TTC	p.S215F	BET1L_uc001loe.2_5'Flank|BET1L_uc001lod.2_5'Flank|RIC8A_uc001lof.2_Missense_Mutation_p.S215F|RIC8A_uc001loh.2_Missense_Mutation_p.S208F	NM_021932	NP_068751	Q9NPQ8	RIC8A_HUMAN	resistance to inhibitors of cholinesterase 8	215						cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity				0		all_cancers(49;9.23e-07)|all_epithelial(84;0.000315)|Breast(177;0.00122)|Ovarian(85;0.0202)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.45e-27)|Epithelial(43;2.94e-26)|OV - Ovarian serous cystadenocarcinoma(40;5.86e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.105)|LUSC - Lung squamous cell carcinoma(625;0.122)		CTCCTTCCTTCCCAAGAGACT	0.582													23	47					0	0	1	0	0
ART5	116969	broad.mit.edu	37	11	3661351	3661351	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:3661351G>A	uc001lyb.1	-	2	701	c.308C>T	c.(307-309)TCG>TTG	p.S103L	ART5_uc001lyc.1_Missense_Mutation_p.S103L|ART5_uc001lyd.2_Missense_Mutation_p.S103L|ART5_uc009yea.2_Missense_Mutation_p.S103L	NM_053017	NP_443750	Q96L15	NAR5_HUMAN	ADP-ribosyltransferase 5 precursor	103						extracellular region	NAD(P)+-protein-arginine ADP-ribosyltransferase activity			ovary(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0336)|LUSC - Lung squamous cell carcinoma(625;0.19)		CAAGGTGTTCGATGAGTTGGT	0.577													50	105					0	0	1	0	0
FAM160A2	84067	broad.mit.edu	37	11	6244953	6244953	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:6244953G>A	uc001mcl.3	-	3	1023	c.664C>T	c.(664-666)CGA>TGA	p.R222*	FAM160A2_uc001mck.3_Nonsense_Mutation_p.R222*|FAM160A2_uc001mcm.2_Nonsense_Mutation_p.R222*	NM_001098794	NP_001092264	Q8N612	F16A2_HUMAN	hypothetical protein LOC84067 isoform 2	222					early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|protein transport	FHF complex	protein binding			skin(2)	2						GTGCCCTCTCGATGCACAAAA	0.607													83	139					0	0	1	0	0
TPP1	1200	broad.mit.edu	37	11	6640113	6640113	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:6640113C>T	uc001mel.1	-	3	184	c.123G>A	c.(121-123)GCG>GCA	p.A41A	TPP1_uc001mek.1_5'UTR|TPP1_uc010rar.1_Silent_p.A41A	NM_000391	NP_000382	O14773	TPP1_HUMAN	tripeptidyl-peptidase I preproprotein	41					bone resorption|cell death|lipid metabolic process|lysosome organization|nervous system development|neuromuscular process controlling balance|peptide catabolic process|protein catabolic process|proteolysis	lysosome|melanosome|soluble fraction	metal ion binding|peptide binding|protein binding|serine-type endopeptidase activity|tripeptidyl-peptidase activity				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;3.45e-09)|BRCA - Breast invasive adenocarcinoma(625;0.131)		CCTCAGGGTCCGCACGGCCCA	0.592													29	58					0	0	1	0	0
OR2AG2	338755	broad.mit.edu	37	11	6789838	6789838	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:6789838G>A	uc001meq.1	-	1	351	c.351C>T	c.(349-351)TTC>TTT	p.F117F		NM_001004490	NP_001004490	A6NM03	O2AG2_HUMAN	olfactory receptor, family 2, subfamily AG,	117	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.15e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CATAGGCCATGAAGGCCAGTA	0.517													31	47					0	0	1	0	0
MRVI1	10335	broad.mit.edu	37	11	10673682	10673682	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:10673682C>T	uc010rcc.1	-	2	501	c.115G>A	c.(115-117)GAG>AAG	p.E39K	MRVI1_uc001miw.2_Missense_Mutation_p.E30K|MRVI1_uc010rcb.1_Missense_Mutation_p.E30K|MRVI1_uc009ygb.1_5'UTR|MRVI1_uc001mix.2_5'UTR|MRVI1_uc001miz.2_Intron|MRVI1_uc009ygc.1_Intron|MRVI1_uc010rcd.1_Missense_Mutation_p.E39K|MRVI1_uc009ygd.1_Intron	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	30					platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		CCCGGAACCTCCGCTGCGTCA	0.652													7	22					0	0	1	0	0
NAV2	89797	broad.mit.edu	37	11	20066875	20066875	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:20066875C>T	uc010rdm.1	+	15	3991	c.3630C>T	c.(3628-3630)AAC>AAT	p.N1210N	NAV2_uc001mpp.2_Silent_p.N1123N|NAV2_uc001mpr.3_Silent_p.N1187N|NAV2_uc001mpt.2_Silent_p.N273N|NAV2_uc009yhx.2_Silent_p.N273N|NAV2_uc009yhy.1_Silent_p.N186N	NM_145117	NP_660093	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 2	1210						nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						CCCGGACAAACCTTCAGTACC	0.552													15	41					0	0	1	0	0
MAPK8IP1	9479	broad.mit.edu	37	11	45924119	45924119	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:45924119C>T	uc001nbr.2	+	5	971	c.801C>T	c.(799-801)ATC>ATT	p.I267I		NM_005456	NP_005447	Q9UQF2	JIP1_HUMAN	mitogen-activated protein kinase 8 interacting	267	JNK-binding domain (JBD).				vesicle-mediated transport	nucleus|perinuclear region of cytoplasm	kinesin binding|MAP-kinase scaffold activity|protein kinase inhibitor activity			ovary(2)|breast(1)|skin(1)	4				GBM - Glioblastoma multiforme(35;0.231)		GAGACCGAATCCACTACCAGG	0.687													10	37					0	0	1	0	0
OR4B1	119765	broad.mit.edu	37	11	48238508	48238508	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:48238508C>T	uc010rhs.1	+	1	147	c.147C>T	c.(145-147)ATC>ATT	p.I49I		NM_001005470	NP_001005470	Q8NGF8	OR4B1_HUMAN	olfactory receptor, family 4, subfamily B,	49	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|pancreas(1)	4						CGGTCAGTATCAGCAAGAGTC	0.507													56	95					0	0	1	0	0
OR4C3	256144	broad.mit.edu	37	11	48347078	48347078	+	Missense_Mutation	SNP	C	T	T	rs140955131		TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:48347078C>T	uc010rhv.1	+	1	586	c.586C>T	c.(586-588)CCC>TCC	p.P196S		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	169	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.P196S(1)		skin(1)	1						CTTCTGTGGGCCCAATGTGAT	0.537													7	87					0	0	1	0	0
TRIM48	79097	broad.mit.edu	37	11	55032559	55032559	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:55032559G>A	uc010rid.1	+	2	314	c.228G>A	c.(226-228)CAG>CAA	p.Q76Q		NM_024114	NP_077019	Q8IWZ4	TRI48_HUMAN	tripartite motif-containing 48	60						intracellular	zinc ion binding				0						AGACAATACAGCAGAGAAACC	0.458													57	64					0	0	1	0	0
OR5L1	219437	broad.mit.edu	37	11	55579692	55579692	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:55579692C>T	uc001nhw.1	+	1	750	c.750C>T	c.(748-750)GTC>GTT	p.V250V		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	250	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				CTATCACTGTCTTCCATGGAA	0.517													32	53					0	0	1	0	0
SPRYD5	84767	broad.mit.edu	37	11	55658978	55658978	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:55658978G>A	uc010rip.1	+	7	1321	c.1229G>A	c.(1228-1230)GGA>GAA	p.G410E	SPRYD5_uc010riq.1_Missense_Mutation_p.G267E	NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	410	B30.2/SPRY.					intracellular	zinc ion binding				0		all_epithelial(135;0.226)				AGCACAGTAGGATTATTCCTG	0.463													38	51					0	0	1	0	0
OR8H3	390152	broad.mit.edu	37	11	55890037	55890037	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:55890037C>T	uc001nii.1	+	1	189	c.189C>T	c.(187-189)TTC>TTT	p.F63F		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	63	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					TGTATTTTTTCCTTACTCACC	0.428													63	133					0	0	1	0	0
OR5T3	390154	broad.mit.edu	37	11	56019991	56019991	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:56019991G>A	uc010rjd.1	+	1	316	c.316G>A	c.(316-318)GTT>ATT	p.V106I		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	106	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					CTATTCTACAGTTGTCACTCC	0.373													30	38					0	0	1	0	0
OR5T3	390154	broad.mit.edu	37	11	56020107	56020107	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:56020107C>T	uc010rjd.1	+	1	432	c.432C>T	c.(430-432)CTC>CTT	p.L144L		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	144	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					AATGTTTTCTCTTGGCTGCAA	0.403													47	80					0	0	1	0	0
OR5AP2	338675	broad.mit.edu	37	11	56409012	56409012	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:56409012C>T	uc001njb.1	-	1	904	c.904G>A	c.(904-906)GAT>AAT	p.D302N		NM_001002925	NP_001002925	Q8NGF4	O5AP2_HUMAN	olfactory receptor, family 5, subfamily AP,	302	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						TTTTTTACATCCTTATTTTTT	0.343													10	16					0	0	1	0	0
DAGLA	747	broad.mit.edu	37	11	61508748	61508748	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:61508748C>T	uc001nsa.2	+	19	2209	c.2098C>T	c.(2098-2100)CCC>TCC	p.P700S		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	700	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		GCAGCCACTCCCCACGGGGCC	0.657													19	48					0	0	1	0	0
PITPNM1	9600	broad.mit.edu	37	11	67269389	67269389	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:67269389A>G	uc001olx.2	-	4	773	c.584T>C	c.(583-585)GTT>GCT	p.V195A	PITPNM1_uc001oly.2_Missense_Mutation_p.V195A|PITPNM1_uc001olz.2_Missense_Mutation_p.V195A	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	195					brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						GCGGAACTCAACCTTGCACAG	0.602													27	39					0	0	1	0	0
MRPL21	219927	broad.mit.edu	37	11	68671264	68671264	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:68671264G>A	uc001ooi.2	-	1	40	c.15C>T	c.(13-15)TCC>TCT	p.S5S	IGHMBP2_uc001ooj.1_5'Flank|IGHMBP2_uc001ook.1_5'Flank|MRPL21_uc001ooh.2_5'UTR|MRPL21_uc010rqe.1_Silent_p.S5S	NM_181514	NP_852615	Q7Z2W9	RM21_HUMAN	mitochondrial ribosomal protein L21 isoform d	5					translation	mitochondrion|ribosome	RNA binding|structural constituent of ribosome				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			TGACCGTCAGGGAAGATGCTG	0.677													61	68					0	0	1	0	0
ODZ4	26011	broad.mit.edu	37	11	78413445	78413445	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:78413445G>A	uc001ozl.3	-	28	4676	c.4213C>T	c.(4213-4215)CAC>TAC	p.H1405Y	ODZ4_uc009yvb.1_5'UTR	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1405	Extracellular (Potential).|NHL 4.				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						CACTCCAGGTGAACCTGACAA	0.418													39	74					0	0	1	0	0
BIRC3	330	broad.mit.edu	37	11	102195542	102195542	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:102195542C>T	uc001pgx.2	+	3	524	c.302C>T	c.(301-303)TCC>TTC	p.S101F		NM_182962	NP_892007	Q13489	BIRC3_HUMAN	baculoviral IAP repeat-containing protein 3	101					anti-apoptosis|apoptosis|cell surface receptor linked signaling pathway	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|skin(1)	4	all_cancers(8;0.00044)|all_epithelial(12;0.00348)|Lung NSC(15;0.227)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0093)	Lung(13;0.109)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0146)		AGTCTAAATTCCGTTAACAAC	0.413			T	MALT1	MALT								34	82					0	0	1	0	0
MMP8	4317	broad.mit.edu	37	11	102587058	102587058	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:102587058C>T	uc001phe.2	-	6	976	c.877G>A	c.(877-879)GGA>AGA	p.G293R	MMP8_uc010rut.1_Missense_Mutation_p.G228R|MMP8_uc010ruu.1_Missense_Mutation_p.G270R	NM_002424	NP_002415	P22894	MMP8_HUMAN	matrix metalloproteinase 8 preproprotein	293	Hemopexin-like 1.				collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4	all_cancers(8;0.00092)|all_epithelial(12;0.00389)|Lung NSC(15;0.227)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0555)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.189)	BRCA - Breast invasive adenocarcinoma(274;0.0141)		AGTATTTCTCCACGGAGTGTG	0.388													25	43					0	0	1	0	0
MMP13	4322	broad.mit.edu	37	11	102820890	102820890	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:102820890G>A	uc001phl.2	-	6	894	c.866C>T	c.(865-867)TCC>TTC	p.S289F		NM_002427	NP_002418	P45452	MMP13_HUMAN	matrix metalloproteinase 13 preproprotein	289					collagen catabolic process|proteolysis	extracellular space	metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0144)		GGCATCAAGGGATAAGGAAGG	0.433													41	87					0	0	1	0	0
ZBTB16	7704	broad.mit.edu	37	11	113934707	113934707	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:113934707C>T	uc001pop.2	+	2	949	c.685C>T	c.(685-687)CTG>TTG	p.L229L	ZBTB16_uc001poo.1_Silent_p.L229L|ZBTB16_uc001poq.2_Silent_p.L229L	NM_006006	NP_005997	Q05516	ZBT16_HUMAN	promyelocytic leukemia zinc finger protein	229					apoptosis|central nervous system development|mesonephros development|myeloid cell differentiation|negative regulation of myeloid cell differentiation|negative regulation of transcription, DNA-dependent	nuclear speck|PML body|transcriptional repressor complex	protein homodimerization activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.79e-18)|all_epithelial(67;2.32e-10)|all_hematologic(158;2.96e-05)|Melanoma(852;0.000362)|Acute lymphoblastic leukemia(157;0.00108)|Breast(348;0.0104)|all_neural(223;0.0294)|Prostate(24;0.0318)|Medulloblastoma(222;0.0438)		BRCA - Breast invasive adenocarcinoma(274;6.75e-06)|Epithelial(105;0.000181)|all cancers(92;0.0018)		GGAGCCAACTCTGGCTGGGGG	0.637													15	31					0	0	1	0	0
TMPRSS13	84000	broad.mit.edu	37	11	117780598	117780598	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:117780598G>A	uc001prs.1	-	8	1125	c.1032C>T	c.(1030-1032)CAC>CAT	p.H344H	TMPRSS13_uc009yzr.1_Silent_p.H23H|TMPRSS13_uc001prt.1_Silent_p.H23H|TMPRSS13_uc001pru.1_Silent_p.H344H	NM_001077263	NP_001070731	Q9BYE2	TMPSD_HUMAN	transmembrane protease, serine 13	339	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			pancreas(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.00106)		TGGTGCCGAAGTGCAGACTCA	0.632													27	50					0	0	1	0	0
HSPA8	3312	broad.mit.edu	37	11	122931334	122931334	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:122931334C>T	uc001pyo.2	-	3	456	c.378G>A	c.(376-378)AAG>AAA	p.K126K	HSPA8_uc009zbc.2_5'Flank|HSPA8_uc001pyp.2_Silent_p.K126K|HSPA8_uc010rzu.1_Intron|HSPA8_uc009zbd.1_Silent_p.K126K|HSPA8_uc010rzv.1_Silent_p.K126K	NM_006597	NP_006588	P11142	HSP7C_HUMAN	heat shock 70kDa protein 8 isoform 1	126					cellular membrane organization|interspecies interaction between organisms|mRNA metabolic process|negative regulation of transcription, DNA-dependent|neurotransmitter secretion|post-Golgi vesicle-mediated transport|protein folding|response to unfolded protein|transcription, DNA-dependent	cell surface|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|melanosome|plasma membrane|ribonucleoprotein complex	ATP binding|ATPase activity, coupled|protein binding			central_nervous_system(7)|lung(1)	8		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		TTTCCTTCATCTTTGTCAGAA	0.498													38	72					0	0	1	0	0
OR4D5	219875	broad.mit.edu	37	11	123810635	123810635	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:123810635C>T	uc001pzk.1	+	1	312	c.312C>T	c.(310-312)TTC>TTT	p.F104F		NM_001001965	NP_001001965	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		TCTTCTTCTTCCACTTCATTG	0.493													29	57					0	0	1	0	0
ESAM	90952	broad.mit.edu	37	11	124623839	124623839	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:124623839G>A	uc001qav.3	-	7	1049	c.876C>T	c.(874-876)CCC>CCT	p.P292P	VSIG2_uc001qas.2_5'Flank|VSIG2_uc001qat.2_5'Flank|ESAM_uc010sao.1_Intron|ESAM_uc001qau.3_Silent_p.P219P|ESAM_uc001qaw.3_RNA|ESAM_uc001qax.3_RNA|ESAM_uc009zbi.2_Missense_Mutation_p.P291L	NM_138961	NP_620411	Q96AP7	ESAM_HUMAN	endothelial cell adhesion molecule precursor	292	Cytoplasmic (Potential).				blood coagulation|leukocyte migration	adherens junction|integral to membrane|tight junction					0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.022)		GCAGGGTCCGGGGAGCAATGG	0.567													10	15					0	0	1	0	0
ZBTB44	29068	broad.mit.edu	37	11	130131246	130131246	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:130131246G>A	uc001qga.2	-	2	917	c.523C>T	c.(523-525)CCT>TCT	p.P175S	ZBTB44_uc001qgb.3_Missense_Mutation_p.P175S|ZBTB44_uc001qfx.2_RNA|ZBTB44_uc001qgc.1_Missense_Mutation_p.P175S|ZBTB44_uc001qfz.2_Missense_Mutation_p.P175S	NM_014155	NP_054874	Q8NCP5	ZBT44_HUMAN	zinc finger and BTB domain containing 44	175					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0192)|Lung(977;0.235)		CGGCAGACAGGAATGGTTCTT	0.453													8	40					0	0	1	0	0
NTM	50863	broad.mit.edu	37	11	132016217	132016217	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr11:132016217A>G	uc001qgp.2	+	2	873	c.209A>G	c.(208-210)AAC>AGC	p.N70S	NTM_uc001qgm.2_Missense_Mutation_p.N70S|NTM_uc010sch.1_Missense_Mutation_p.N61S|NTM_uc010sci.1_Missense_Mutation_p.N70S|NTM_uc010scj.1_Missense_Mutation_p.N29S|NTM_uc001qgo.2_Missense_Mutation_p.N70S|NTM_uc001qgq.2_Missense_Mutation_p.N70S	NM_016522	NP_057606	Q9P121	NTRI_HUMAN	neurotrimin isoform 1	70	Ig-like C2-type 1.				cell adhesion|neuron recognition	anchored to membrane|plasma membrane				ovary(4)|central_nervous_system(1)|skin(1)	6						GCCTGGCTAAACCGCAGCACC	0.572													27	42					0	0	1	0	0
C1S	716	broad.mit.edu	37	12	7169913	7169913	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:7169913G>A	uc001qsj.2	+	6	859	c.140G>A	c.(139-141)GGG>GAG	p.G47E	C1S_uc001qsk.2_Missense_Mutation_p.G47E|C1S_uc001qsl.2_Missense_Mutation_p.G47E|C1S_uc009zfr.2_Intron|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	47	CUB 1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	GTTCCTGAAGGGTATGGGATT	0.458													27	52					0	0	1	0	0
DDX12	440081	broad.mit.edu	37	12	9573187	9573187	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:9573187G>A	uc010sgs.1	-	21	2321	c.2126C>T	c.(2125-2127)TCC>TTC	p.S709F	DDX12_uc001qvx.3_5'Flank|DDX12_uc001qvy.1_5'Flank	NM_004400	NP_004391			DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12												0						GTACTCGTAGGAGGGGAAGAA	0.547													19	33					0	0	1	0	0
TAS2R13	50838	broad.mit.edu	37	12	11061756	11061756	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:11061756G>A	uc001qzg.1	-	1	406	c.142C>T	c.(142-144)CTC>TTC	p.L48F	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron	NM_023920	NP_076409	Q9NYV9	T2R13_HUMAN	taste receptor, type 2, member 13	48	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	taste receptor activity			breast(1)|skin(1)	2						AAGATAATGAGGAGTTTATCG	0.393													12	24					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43750374	43750374	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:43750374A>T	uc010skx.1	-	38	5556	c.5556T>A	c.(5554-5556)AAT>AAA	p.N1852K		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1852	GON.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TTCCTGACAAATTAATGCTAA	0.393													6	8					0	0	1	0	0
NELL2	4753	broad.mit.edu	37	12	44917257	44917257	+	Missense_Mutation	SNP	C	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:44917257C>A	uc001rog.2	-	17	2410	c.1815G>T	c.(1813-1815)GAG>GAT	p.E605D	NELL2_uc001rof.3_Missense_Mutation_p.E604D|NELL2_uc001roh.2_Missense_Mutation_p.E605D|NELL2_uc009zkd.2_Missense_Mutation_p.E557D|NELL2_uc010skz.1_Missense_Mutation_p.E655D|NELL2_uc010sla.1_Missense_Mutation_p.E628D|NELL2_uc001roi.1_Missense_Mutation_p.E605D	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	605	EGF-like 6; calcium-binding (Potential).				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		CGGTCCCACACTCATCAATAT	0.448													27	27					4.59853e-10	4.69e-10	1	1	0
ACVR1B	91	broad.mit.edu	37	12	52377937	52377937	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:52377937C>T	uc001rzn.2	+	5	1008	c.966C>T	c.(964-966)ATC>ATT	p.I322I	ACVR1B_uc001rzl.2_Silent_p.I322I|ACVR1B_uc001rzm.2_Silent_p.I322I|ACVR1B_uc010snn.1_Silent_p.I363I	NM_004302	NP_004293	P36896	ACV1B_HUMAN	activin A receptor, type IB isoform a precursor	322	Protein kinase.|Cytoplasmic (Potential).				G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|peptidyl-threonine phosphorylation|positive regulation of activin receptor signaling pathway|positive regulation of erythrocyte differentiation|protein autophosphorylation|transmembrane receptor protein serine/threonine kinase signaling pathway	cell surface	activin receptor activity, type I|ATP binding|metal ion binding|SMAD binding|transforming growth factor beta receptor activity|ubiquitin protein ligase binding			pancreas(4)|breast(2)|ovary(1)|lung(1)|kidney(1)	9				BRCA - Breast invasive adenocarcinoma(357;0.104)	Adenosine triphosphate(DB00171)	ACATGGAGATCGTGGGCACCC	0.522													13	23					0	0	1	0	0
KRT6B	3854	broad.mit.edu	37	12	52842677	52842677	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:52842677G>A	uc001sak.2	-	6	1200	c.1152C>T	c.(1150-1152)ATC>ATT	p.I384I		NM_005555	NP_005546	P04259	K2C6B_HUMAN	keratin 6B	384	Rod.|Coil 2.				ectoderm development	keratin filament	structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.083)		TCATGCGGTTGATCTCAGCAA	0.522													32	53					0	0	1	0	0
SPRYD3	84926	broad.mit.edu	37	12	53468916	53468916	+	Silent	SNP	A	G	G			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:53468916A>G	uc001sbt.1	-	4	355	c.334T>C	c.(334-336)TTG>CTG	p.L112L	SPRYD3_uc010snw.1_5'UTR	NM_032840	NP_116229	Q8NCJ5	SPRY3_HUMAN	SPRY domain containing 3	112	B30.2/SPRY.									central_nervous_system(1)	1						GAGTCAGGCAACCAGCCAGGC	0.532													40	85					0	0	1	0	0
ATF7	11016	broad.mit.edu	37	12	53928382	53928382	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:53928382G>A	uc001sdy.2	-	5	518	c.497C>T	c.(496-498)TCC>TTC	p.S166F	ATF7_uc010sok.1_RNA|ATF7_uc001sdz.2_Missense_Mutation_p.S155F|ATF7_uc010sol.1_Missense_Mutation_p.S134F	NM_001130059	NP_001123531	P17544	ATF7_HUMAN	activating transcription factor 7 isoform 1	166	Transactivation domain.				interspecies interaction between organisms	cytoplasm|nuclear periphery|nucleoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)	2						GAGAGGCAGGGAGCCAGGACG	0.512													37	42					0	0	1	0	0
OR10P1	121130	broad.mit.edu	37	12	56030935	56030935	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:56030935C>T	uc010spq.1	+	1	260	c.260C>T	c.(259-261)TCC>TTC	p.S87F		NM_206899	NP_996782	Q8NGE3	O10P1_HUMAN	olfactory receptor, family 10, subfamily P,	87	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						AATCTGGGCTCCCCGCATCCC	0.617													28	53					0	0	1	0	0
OR10P1	121130	broad.mit.edu	37	12	56031341	56031341	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:56031341C>T	uc010spq.1	+	1	666	c.666C>T	c.(664-666)ATC>ATT	p.I222I		NM_206899	NP_996782	Q8NGE3	O10P1_HUMAN	olfactory receptor, family 10, subfamily P,	222	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						ACATCCGCATCCTGGGTGCCA	0.552													45	90					0	0	1	0	0
DNAJC14	85406	broad.mit.edu	37	12	56222427	56222427	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:56222427G>A	uc001shx.1	-	2	220	c.16C>T	c.(16-18)CCC>TCC	p.P6S	DNAJC14_uc001shu.1_Missense_Mutation_p.P6S|DNAJC14_uc009zob.1_Missense_Mutation_p.P6S|DNAJC14_uc001shy.1_Missense_Mutation_p.P6S	NM_032364	NP_115740	Q6Y2X3	DJC14_HUMAN	dopamine receptor interacting protein	6					protein folding|protein transport	endoplasmic reticulum membrane|integral to membrane	heat shock protein binding|unfolded protein binding			ovary(3)|large_intestine(1)	4						CTTTCTCCGGGGTGCTTCTGG	0.557													24	24					0	0	1	0	0
CPSF6	11052	broad.mit.edu	37	12	69656328	69656328	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:69656328C>T	uc001sut.3	+	9	1755	c.1645C>T	c.(1645-1647)CGT>TGT	p.R549C	CPSF6_uc001suu.3_Missense_Mutation_p.R586C|CPSF6_uc010stk.1_Missense_Mutation_p.R181C	NM_007007	NP_008938	Q16630	CPSF6_HUMAN	cleavage and polyadenylation specific factor 6,	549	Sufficient for nuclear targeting.|Arg-rich.				mRNA polyadenylation|protein tetramerization	mRNA cleavage factor complex|paraspeckles|ribonucleoprotein complex	mRNA binding|nucleotide binding|protein binding				0	all_epithelial(5;2.47e-36)|Lung NSC(4;1.1e-32)|all_lung(4;6.26e-31)|Breast(13;1.59e-06)|Esophageal squamous(21;0.187)		Epithelial(6;4.89e-17)|BRCA - Breast invasive adenocarcinoma(5;8.5e-10)|Lung(24;6.04e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.0151)|LUSC - Lung squamous cell carcinoma(43;0.171)|Kidney(9;0.241)			gcgCGAATATCGTCATCGTTA	0.338													16	9					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70954580	70954580	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:70954580C>T	uc001swb.3	-	15	3679	c.3649G>A	c.(3649-3651)GAA>AAA	p.E1217K	PTPRB_uc010sto.1_Missense_Mutation_p.E1127K|PTPRB_uc010stp.1_Missense_Mutation_p.E1127K|PTPRB_uc001swc.3_Missense_Mutation_p.E1435K|PTPRB_uc001swa.3_Missense_Mutation_p.E1347K|PTPRB_uc001swd.3_Missense_Mutation_p.E1434K|PTPRB_uc009zrr.1_Missense_Mutation_p.E1314K	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1217	Fibronectin type-III 14.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TTCCAGTTTTCCTTCTTTGTG	0.498													16	46					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70974880	70974880	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:70974880G>A	uc001swb.3	-	8	1890	c.1860C>T	c.(1858-1860)TCC>TCT	p.S620S	PTPRB_uc010sto.1_Silent_p.S620S|PTPRB_uc010stp.1_Silent_p.S530S|PTPRB_uc001swc.3_Silent_p.S838S|PTPRB_uc001swa.3_Silent_p.S838S|PTPRB_uc001swd.3_Silent_p.S837S|PTPRB_uc009zrr.1_Silent_p.S717S	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	620	Fibronectin type-III 7.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TTACCACCACGGAGTACAGGC	0.458													32	85					0	0	1	0	0
PTPRR	5801	broad.mit.edu	37	12	71095086	71095086	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:71095086G>A	uc001swi.1	-	7	1441	c.1025C>T	c.(1024-1026)TCT>TTT	p.S342F	PTPRR_uc001swh.1_Missense_Mutation_p.S97F|PTPRR_uc009zrs.2_Missense_Mutation_p.S191F|PTPRR_uc010stq.1_Missense_Mutation_p.S230F|PTPRR_uc010str.1_Missense_Mutation_p.S191F	NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	342	Cytoplasmic (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		CAATGTAAGAGATACGTTGGA	0.413													18	36					0	0	1	0	0
VEZT	55591	broad.mit.edu	37	12	95694306	95694307	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:95694306_95694307CC>TT	uc001tdz.2	+	12	2302_2303	c.2197_2198CC>TT	c.(2197-2199)CCA>TTA	p.P733L	VEZT_uc009ztb.1_RNA|VEZT_uc009ztc.1_Missense_Mutation_p.P98L|VEZT_uc001tdy.2_RNA	NM_017599	NP_060069	Q9HBM0	VEZA_HUMAN	vezatin, adherens junctions transmembrane	733						acrosomal vesicle|adherens junction|integral to membrane|nucleus				ovary(1)	1						ACAGCTGTCACCAGATTTTACC	0.535													19	31					0	0	1	0	0
NR1H4	9971	broad.mit.edu	37	12	100904735	100904735	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:100904735G>A	uc001tht.1	+	2	317	c.289G>A	c.(289-291)GAA>AAA	p.E97K	NR1H4_uc001thp.1_Missense_Mutation_p.E87K|NR1H4_uc001thq.1_Missense_Mutation_p.E87K|NR1H4_uc010svj.1_RNA|NR1H4_uc001thr.1_Missense_Mutation_p.E87K|NR1H4_uc010svk.1_Missense_Mutation_p.E87K|NR1H4_uc001ths.1_Missense_Mutation_p.E97K	NM_005123	NP_005114	Q96RI1	NR1H4_HUMAN	nuclear receptor subfamily 1, group H, member 4	97					bile acid metabolic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						TGGAATATATGAACTCAGGCG	0.522													36	55					0	0	1	0	0
ANO4	121601	broad.mit.edu	37	12	101333101	101333101	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:101333101G>A	uc010svm.1	+	4	741	c.169G>A	c.(169-171)GAT>AAT	p.D57N	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Missense_Mutation_p.D22N|ANO4_uc001thx.2_Missense_Mutation_p.D57N	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	57	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						AGTGGCCAAGGATGTCAATAT	0.383										HNSCC(74;0.22)			19	38					0	0	1	0	0
WSCD2	9671	broad.mit.edu	37	12	108589759	108589759	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:108589759G>A	uc001tms.2	+	2	894	c.150G>A	c.(148-150)GCG>GCA	p.A50A	WSCD2_uc001tmt.2_Silent_p.A50A	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	50						integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						GGAACCAGGCGAACCCCGCTG	0.607													54	118					0	0	1	0	0
CUX2	23316	broad.mit.edu	37	12	111772438	111772438	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:111772438C>T	uc001tsa.1	+	19	3273	c.3120C>T	c.(3118-3120)ATC>ATT	p.I1040I		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1040	CUT 3.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						TCCAGGAGATCGTGGCCATGT	0.617													29	34					0	0	1	0	0
C12orf51	283450	broad.mit.edu	37	12	112654962	112654962	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:112654962G>C	uc009zwc.2	-	39	5864	c.5846C>G	c.(5845-5847)CCG>CGG	p.P1949R	C12orf51_uc001ttr.1_Missense_Mutation_p.P124R	NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						TCGAACAGGCGGAAACACTCG	0.532													7	26					0	0	1	0	0
C12orf51	283450	broad.mit.edu	37	12	112672931	112672931	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:112672931G>A	uc009zwc.2	-	30	4617	c.4599C>T	c.(4597-4599)ATC>ATT	p.I1533I		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						CCCGCTTGTGGATAAATATCG	0.383													3	10					0	0	1	0	0
MLXIP	22877	broad.mit.edu	37	12	122625513	122625513	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:122625513A>G	uc001ubq.2	+	16	2521	c.2521A>G	c.(2521-2523)ATC>GTC	p.I841V	MLXIP_uc001ubt.2_Missense_Mutation_p.I448V	NM_014938	NP_055753	Q9HAP2	MLXIP_HUMAN	MLX interacting protein	841	Mediates heterotypic interactions between MLXIP and MLX and is required for cytoplasmic localization.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial outer membrane|nucleus	DNA binding			ovary(2)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)	Lung NSC(355;0.0659)		OV - Ovarian serous cystadenocarcinoma(86;0.000599)|Epithelial(86;0.00102)|BRCA - Breast invasive adenocarcinoma(302;0.233)		CAGCATCATCATCAAGCCGCT	0.597													33	62					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124297969	124297969	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:124297969C>T	uc001uft.3	+	19	3074	c.3049C>T	c.(3049-3051)CCT>TCT	p.P1017S	DNAH10_uc010tav.1_Missense_Mutation_p.P559S|DNAH10_uc010taw.1_Missense_Mutation_p.P502S	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1017	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CAAGAAACCTCCTTGTGTAGC	0.398													29	65					0	0	1	0	0
TMEM132C	92293	broad.mit.edu	37	12	128899602	128899602	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:128899602G>A	uc001uhs.3	+	1	312	c.75G>A	c.(73-75)CGG>CGA	p.R25R		NM_001136103	NP_001129575	Q8N3T6	T132C_HUMAN	transmembrane protein 132C	137	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1						ACATCCTGCGGGACAAAGTCT	0.502													8	7					0	0	1	0	0
DKFZp686A1627	266695	broad.mit.edu	37	13	19636783	19636783	+	RNA	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr13:19636783G>A	uc001umb.1	-	6		c.799C>T				NR_002801				Homo sapiens mRNA; cDNA DKFZp686A1627 (from clone DKFZp686A1627).												0						GGTATATGCCGATGTCGGGGG	0.527													11	23					0	0	1	0	0
RXFP2	122042	broad.mit.edu	37	13	32332521	32332521	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr13:32332521G>A	uc001utt.2	+	2	292	c.221G>A	c.(220-222)GGG>GAG	p.G74E	RXFP2_uc010aba.2_Missense_Mutation_p.G57E	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	74	Extracellular (Potential).|LDL-receptor class A.					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		TGTGGGAACGGGGCGGACGAA	0.507													36	61					0	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32811801	32811801	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr13:32811801C>T	uc001utx.2	+	44	6592	c.6096C>T	c.(6094-6096)TCC>TCT	p.S2032S	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2032					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		CGGACCCATCCCACATAAACC	0.498													7	22					0	0	1	0	0
TSC22D1	8848	broad.mit.edu	37	13	45149708	45149708	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr13:45149708G>A	uc001uzn.3	-	1	994	c.503C>T	c.(502-504)CCC>CTC	p.P168L	TSC22D1_uc001uzo.1_Missense_Mutation_p.P168L	NM_183422	NP_904358	Q15714	T22D1_HUMAN	TSC22 domain family, member 1 isoform 1	168					transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(4;8.74e-08)|Acute lymphoblastic leukemia(4;1.78e-07)|Lung NSC(96;2.21e-05)|Breast(139;0.000625)|Prostate(109;0.000947)|Hepatocellular(98;0.0202)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;0.000522)|BRCA - Breast invasive adenocarcinoma(63;0.118)		GCTGCGTTCGGGCTCCCCTAA	0.527													29	43					0	0	1	0	0
Unknown	0	broad.mit.edu	37	13	52034998	52034998	+	RNA	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr13:52034998C>T	uc001vfo.1	+	1		c.1903C>T								Homo sapiens cDNA FLJ34612 fis, clone KIDNE2014170, highly similar to 40S RIBOSOMAL PROTEIN S4, X ISOFORM.																		TGCTGTACATCATATTACACC	0.438													5	10					0	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110822023	110822023	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr13:110822023G>A	uc001vqw.3	-	43	3951	c.3829C>T	c.(3829-3831)CCC>TCC	p.P1277S	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1277	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			GGGACACCGGGTGCTCCTGGC	0.517													49	53					0	0	1	0	0
ARHGEF7	8874	broad.mit.edu	37	13	111944562	111944562	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr13:111944562G>A	uc001vrs.2	+	20	2545	c.2295G>A	c.(2293-2295)TTG>TTA	p.L765L	ARHGEF7_uc001vrr.2_Silent_p.L744L|ARHGEF7_uc001vrt.2_Silent_p.L715L|ARHGEF7_uc001vrv.3_Intron|ARHGEF7_uc001vrw.3_Intron|ARHGEF7_uc001vrx.3_Intron|ARHGEF7_uc010tjo.1_Intron|ARHGEF7_uc010tjp.1_Silent_p.L509L|ARHGEF7_uc001vry.1_Silent_p.L181L	NM_001113511	NP_001106983	Q14155	ARHG7_HUMAN	PAK-interacting exchange factor beta isoform c	765					apoptosis|epidermal growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_lung(23;3.96e-05)|Lung NSC(43;0.00156)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.188)			TTTCTCGTTTGGAGCCTTCAG	0.493													32	60					0	0	1	0	0
F10	2159	broad.mit.edu	37	13	113801724	113801724	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr13:113801724T>A	uc001vsx.2	+	7	836	c.779T>A	c.(778-780)TTC>TAC	p.F260Y	F10_uc010agq.1_RNA|F10_uc001vsy.2_Missense_Mutation_p.F260Y|F10_uc001vsz.2_Missense_Mutation_p.F260Y	NM_000504	NP_000495	P00742	FA10_HUMAN	coagulation factor X preproprotein	260	Peptidase S1.				blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of cell migration|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen	calcium ion binding|phospholipid binding|protein binding|serine-type endopeptidase activity			pancreas(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.113)|all_lung(25;0.0364)|all_epithelial(44;0.0373)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0805)|Epithelial(84;0.231)		Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Enoxaparin(DB01225)|Heparin(DB01109)|Menadione(DB00170)|Reteplase(DB00015)|Tenecteplase(DB00031)	AACGAGGGTTTCTGTGGTGGA	0.542													26	35					0	0	1	0	0
ZNF828	283489	broad.mit.edu	37	13	115091186	115091187	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr13:115091186_115091187CC>TT	uc010ahb.2	+	3	2198_2199	c.1869_1870CC>TT	c.(1867-1872)AACCAA>AATTAA	p.Q624*	ZNF828_uc001vuv.2_Nonsense_Mutation_p.Q624*|ZNF828_uc010tko.1_Nonsense_Mutation_p.Q624*	NM_001164144	NP_001157616	Q96JM3	ZN828_HUMAN	zinc finger protein 828	624	Mediates localization to the chromosome and the spindle and negatively regulates chromosome alignment.				attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|protein localization to kinetochore|protein localization to microtubule|sister chromatid biorientation	condensed chromosome kinetochore|cytoplasm|nucleus|spindle	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_epithelial(44;0.122)|all_lung(25;0.123)	BRCA - Breast invasive adenocarcinoma(86;0.104)	OV - Ovarian serous cystadenocarcinoma(48;0.193)|Epithelial(10;0.197)		AGAAAGACAACCAAGAGAGCTC	0.386													30	58					0	0	1	0	0
OR4K2	390431	broad.mit.edu	37	14	20345093	20345093	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr14:20345093G>A	uc001vwh.1	+	1	667	c.667G>A	c.(667-669)GTT>ATT	p.V223I		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	223	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TATTGTCCTGGTTACTGTGAA	0.378													25	120					0	0	1	0	0
OR4K15	81127	broad.mit.edu	37	14	20444324	20444324	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr14:20444324C>T	uc010tkx.1	+	1	647	c.647C>T	c.(646-648)ACT>ATT	p.T216I		NM_001005486	NP_001005486	Q8NH41	OR4KF_HUMAN	olfactory receptor, family 4, subfamily K,	216	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;3.58e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TGCATAGACACTTATGTTGTC	0.403													48	99					0	0	1	0	0
OR10G2	26534	broad.mit.edu	37	14	22102855	22102855	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr14:22102855G>A	uc010tmc.1	-	1	144	c.144C>T	c.(142-144)CTC>CTT	p.L48L		NM_001005466	NP_001005466	Q8NGC3	O10G2_HUMAN	olfactory receptor, family 10, subfamily G,	48	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0142)		TGAGCAGAATGAGCAGGTTCC	0.512													32	50					0	0	1	0	0
ADCY4	196883	broad.mit.edu	37	14	24798657	24798657	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr14:24798657G>A	uc001wov.2	-	9	1306	c.1300C>T	c.(1300-1302)CCC>TCC	p.P434S	ADCY4_uc001wow.2_Missense_Mutation_p.P434S|ADCY4_uc010toh.1_Missense_Mutation_p.P120S|ADCY4_uc001wox.2_Missense_Mutation_p.P434S|ADCY4_uc001woy.2_Missense_Mutation_p.P434S	NM_139247	NP_640340	Q8NFM4	ADCY4_HUMAN	adenylate cyclase 4	434	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding|protein binding			ovary(1)|lung(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(265;0.0192)		CGAAGGTAGGGGTCCCGATGC	0.637													43	54					0	0	1	0	0
FANCM	57697	broad.mit.edu	37	14	45644574	45644575	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr14:45644574_45644575GG>AC	uc001wwd.3	+	14	2716_2717	c.2617_2618GG>AC	c.(2617-2619)GGT>ACT	p.G873T	FANCM_uc010anf.2_Missense_Mutation_p.G847T|FANCM_uc001wwe.3_Missense_Mutation_p.G409T|FANCM_uc010ang.2_Missense_Mutation_p.G87T	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	873					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						AAATAATCACGGTATTATAGAT	0.257								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				8	17					0	0	1	0	0
MGAT2	4247	broad.mit.edu	37	14	50088518	50088518	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr14:50088518C>T	uc001wwr.2	+	1	1030	c.532C>T	c.(532-534)CCT>TCT	p.P178S	SDCCAG1_uc010anj.1_Intron|RPL36AL_uc001wwq.1_5'Flank	NM_002408	NP_002399	Q10469	MGAT2_HUMAN	mannosyl (alpha-1,6-)-glycoprotein	178	Lumenal (Potential).				oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|Golgi stack|integral to membrane|membrane fraction	alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity				0	all_epithelial(31;0.0021)|Breast(41;0.0124)					GGTGTTCTTTCCTTTCAGCAT	0.502													40	70					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64537396	64537396	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr14:64537396C>T	uc001xgm.2	+	52	10695	c.10465C>T	c.(10465-10467)CAG>TAG	p.Q3489*	SYNE2_uc001xgl.2_Nonsense_Mutation_p.Q3489*|SYNE2_uc010apw.1_Nonsense_Mutation_p.Q195*	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	3489	Potential.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		AGATAATCTTCAGGAAGAACT	0.358													11	12					0	0	1	0	0
ZBTB1	22890	broad.mit.edu	37	14	64989987	64989987	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr14:64989987C>T	uc001xhh.3	+	4	2196	c.1765C>T	c.(1765-1767)CAG>TAG	p.Q589*	ZBTB1_uc010aqg.2_Nonsense_Mutation_p.Q589*|ZBTB1_uc001xhi.2_Nonsense_Mutation_p.Q589*	NM_001123329	NP_001116801	Q9Y2K1	ZBTB1_HUMAN	zinc finger and BTB domain containing 1 isoform	589	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		all_lung(585;0.000567)|Myeloproliferative disorder(585;0.0255)|all_neural(303;0.0294)		UCEC - Uterine corpus endometrioid carcinoma (185;0.0182)|all cancers(60;3.78e-43)|OV - Ovarian serous cystadenocarcinoma(108;1.22e-20)|BRCA - Breast invasive adenocarcinoma(234;6.75e-06)|KIRC - Kidney renal clear cell carcinoma(182;0.00269)|STAD - Stomach adenocarcinoma(64;0.012)		AGGATTTTATCAGCGGTGTCA	0.368													28	38					0	0	1	0	0
ADAM20	8748	broad.mit.edu	37	14	70989510	70989510	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr14:70989510G>A	uc001xme.2	-	2	2360	c.2115C>T	c.(2113-2115)AAC>AAT	p.N705N		NM_003814	NP_003805	O43506	ADA20_HUMAN	ADAM metallopeptidase domain 20 preproprotein	655	EGF-like.|Extracellular (Potential).				proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.133)|Kidney(31;0.188)	all cancers(60;0.00294)|BRCA - Breast invasive adenocarcinoma(234;0.00668)|OV - Ovarian serous cystadenocarcinoma(108;0.0344)		CCCATTCATGGTTGCAGTGAC	0.483													71	134					0	0	1	0	0
PCNX	22990	broad.mit.edu	37	14	71443893	71443893	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr14:71443893C>T	uc001xmo.2	+	6	1285	c.839C>T	c.(838-840)CCG>CTG	p.P280L	PCNX_uc001xmn.3_Missense_Mutation_p.P280L|PCNX_uc010are.1_Missense_Mutation_p.P280L	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	280						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		GACCACCGGCCGCGAGGTGTA	0.483													25	58					0	0	1	0	0
SPATA7	55812	broad.mit.edu	37	14	88892695	88892695	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr14:88892695C>T	uc001xwq.2	+	6	643	c.492C>T	c.(490-492)TCC>TCT	p.S164S	SPATA7_uc001xwr.2_Silent_p.S132S|SPATA7_uc001xws.2_Silent_p.S100S|SPATA7_uc001xwt.2_Silent_p.S58S|SPATA7_uc001xwu.2_5'Flank	NM_018418	NP_060888	Q9P0W8	SPAT7_HUMAN	spermatogenesis-associated protein 7 isoform a	164					response to stimulus|visual perception					ovary(1)	1						TACATAAATCCAGTAAAGTCA	0.468													28	42					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94158280	94158280	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr14:94158280C>T	uc001ybv.1	+	45	7193	c.7110C>T	c.(7108-7110)GCC>GCT	p.A2370A	KIAA1409_uc001ybs.1_Silent_p.A2348A	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	2525						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		AGCTAATGGCCCATAACAAAG	0.453													28	54					0	0	1	0	0
SERPINA4	5267	broad.mit.edu	37	14	95029946	95029946	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr14:95029946G>A	uc001ydk.2	+	2	193	c.127G>A	c.(127-129)GGT>AGT	p.G43S	SERPINA4_uc010avd.2_Missense_Mutation_p.G80S|SERPINA4_uc001ydl.2_Missense_Mutation_p.G43S	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	43					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		TCTGGAGACAGGTGAGGGCTC	0.567													45	53					0	0	1	0	0
SERPINA3	12	broad.mit.edu	37	14	95080859	95080859	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr14:95080859C>T	uc001ydp.2	+	2	160	c.81C>T	c.(79-81)AGC>AGT	p.S27S	SERPINA3_uc001ydo.3_Silent_p.S52S|SERPINA3_uc010avf.1_RNA|SERPINA3_uc001ydr.2_RNA|SERPINA3_uc001ydq.2_Silent_p.S27S|SERPINA3_uc001yds.2_Silent_p.S27S|SERPINA3_uc010avg.2_Silent_p.S27S	NM_001085	NP_001076	P01011	AACT_HUMAN	serpin peptidase inhibitor, clade A, member 3	27					acute-phase response|maintenance of gastrointestinal epithelium|regulation of lipid metabolic process|regulation of proteolysis	extracellular region|nucleus	DNA binding|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|skin(1)	6		all_cancers(154;0.0525)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.212)|Epithelial(152;0.228)		ACCCTAACAGCCCACTTGACG	0.567													40	82					0	0	1	0	0
EML1	2009	broad.mit.edu	37	14	100387179	100387179	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr14:100387179G>A	uc001ygs.2	+	17	1943	c.1874G>A	c.(1873-1875)GGA>GAA	p.G625E	EML1_uc010tww.1_Missense_Mutation_p.G613E|EML1_uc001ygr.2_Missense_Mutation_p.G644E	NM_004434	NP_004425	O00423	EMAL1_HUMAN	echinoderm microtubule associated protein like 1	625	WD 8.					cytoplasm|microtubule|microtubule associated complex	calcium ion binding|protein binding			large_intestine(2)|pancreas(1)|ovary(1)|skin(1)	5		Melanoma(154;0.0879)|all_epithelial(191;0.216)				CACACAGATGGAAACGAACAG	0.313													18	46					0	0	1	0	0
RTL1	388015	broad.mit.edu	37	14	101348269	101348269	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr14:101348269C>T	uc010txj.1	-	1	2916	c.2857G>A	c.(2857-2859)GAT>AAT	p.D953N	MIR433_hsa-mir-433|MI0001723_RNA|uc001yig.3_5'Flank|MIR127_hsa-mir-127|MI0000472_5'Flank|MIR432_hsa-mir-432|MI0003133_5'Flank|uc010txk.1_5'Flank|MIR136_hsa-mir-136|MI0000475_5'Flank	NM_001134888	NP_001128360	A6NKG5	RTL1_HUMAN	retrotransposon-like 1	953										pancreas(1)	1						GAGGCTAGATCCTCTGTGTTG	0.527													41	61					0	0	1	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102446168	102446168	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr14:102446168C>T	uc001yks.2	+	4	795	c.631C>T	c.(631-633)CCA>TCA	p.P211S		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	211	Stem (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						GCCGATTCATCCAATGATCAC	0.403													36	66					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106621889	106621889	+	RNA	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr14:106621889G>A	uc010tyt.1	-	1116		c.25670C>T								Parts of antibodies, mostly variable regions.												0						TCCCCTCACAGGATTTCTCAC	0.532													41	80					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106790918	106790918	+	RNA	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr14:106790918C>T	uc010tyt.1	-	387		c.14700G>A								Parts of antibodies, mostly variable regions.												0						TCAGTGGCTCCTGAGCGCCCC	0.582													28	80					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	20489466	20489466	+	RNA	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr15:20489466C>T	uc001ytf.1	+	3		c.454C>T								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		AACTTCATTCCTAAAGTCTGG	0.428													9	35					0	0	1	0	0
OR4N4	283694	broad.mit.edu	37	15	22382680	22382680	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr15:22382680G>A	uc001yuc.1	+	7	1189	c.208G>A	c.(208-210)GAT>AAT	p.D70N	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Missense_Mutation_p.D70N	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	70	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		GGCCTTCCTGGATGCATCCTA	0.473													13	38					0	0	1	0	0
FSIP1	161835	broad.mit.edu	37	15	39910123	39910123	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr15:39910123C>T	uc001zki.2	-	11	1730	c.1512G>A	c.(1510-1512)ATG>ATA	p.M504I		NM_152597	NP_689810	Q8NA03	FSIP1_HUMAN	fibrous sheath interacting protein 1	504										ovary(2)|skin(1)	3		all_cancers(109;2.66e-19)|all_epithelial(112;2.66e-16)|Lung NSC(122;1.5e-11)|all_lung(180;4.03e-10)|Melanoma(134;0.0575)|Ovarian(310;0.0827)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;8.22e-06)|BRCA - Breast invasive adenocarcinoma(123;0.142)		GAAGGCATTTCATATTCTCTG	0.398													29	14					0	0	1	0	0
PLA2G4F	255189	broad.mit.edu	37	15	42434846	42434846	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr15:42434846G>A	uc001zoz.2	-	19	2272	c.2209C>T	c.(2209-2211)CCT>TCT	p.P737S	PLA2G4F_uc010bcq.2_Missense_Mutation_p.P34S|PLA2G4F_uc001zoy.2_Missense_Mutation_p.P369S|PLA2G4F_uc010bcr.2_Missense_Mutation_p.P488S|PLA2G4F_uc001zpa.2_Missense_Mutation_p.P488S|PLA2G4F_uc010bcs.2_Missense_Mutation_p.P524S	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	737	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		ATGTCCTCAGGGCCCACCTCG	0.587													30	21					0	0	1	0	0
MAP2K1	5604	broad.mit.edu	37	15	66729162	66729162	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr15:66729162C>T	uc010bhq.2	+	3	845	c.370C>T	c.(370-372)CCG>TCG	p.P124S	MAP2K1_uc010ujp.1_Missense_Mutation_p.P102S	NM_002755	NP_002746	Q02750	MP2K1_HUMAN	mitogen-activated protein kinase kinase 1	124	Protein kinase.				activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|plasma membrane	ATP binding|MAP kinase kinase activity|protein serine/threonine kinase activity|protein tyrosine kinase activity				0						GTGCAACTCTCCGTACATCGT	0.507									Cardiofaciocutaneous_syndrome				13	67					0	0	1	0	0
C15orf39	56905	broad.mit.edu	37	15	75499306	75499306	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr15:75499306C>T	uc002azp.3	+	2	1237	c.917C>T	c.(916-918)CCT>CTT	p.P306L	C15orf39_uc002azq.3_Missense_Mutation_p.P306L|C15orf39_uc002azr.3_5'Flank	NM_015492	NP_056307	Q6ZRI6	CO039_HUMAN	hypothetical protein LOC56905	306											0						CCACTGCAGCCTCTGGGGGGC	0.627													22	38					0	0	1	0	0
MESDC1	59274	broad.mit.edu	37	15	81295208	81295208	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr15:81295208C>T	uc002bfz.2	+	1	1914	c.596C>T	c.(595-597)GCC>GTC	p.A199V		NM_022566	NP_072088	Q9H1K6	MESD1_HUMAN	mesoderm development candidate 1	199											0						GACGCGTGCGCCCTGGCCAGT	0.687													9	14					0	0	1	0	0
TMC3	342125	broad.mit.edu	37	15	81627102	81627102	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr15:81627102G>A	uc002bgo.1	-	21	2418	c.2418C>T	c.(2416-2418)CTC>CTT	p.L806L	TMC3_uc010blr.1_RNA	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	806	Cytoplasmic (Potential).					integral to membrane				ovary(1)|liver(1)	2						GGACCCCAGGGAGAGGTGAGC	0.557													24	39					0	0	1	0	0
C15orf42	90381	broad.mit.edu	37	15	90129000	90129000	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr15:90129000C>T	uc002boe.2	+	4	1238	c.1238C>T	c.(1237-1239)TCT>TTT	p.S413F		NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	413					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			TCCCCACTCTCTGCCAGTGCT	0.532													18	34					0	0	1	0	0
PKD1	5310	broad.mit.edu	37	16	2168072	2168072	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr16:2168072G>A	uc002cos.1	-	5	1130	c.921C>T	c.(919-921)TTC>TTT	p.F307F	PKD1_uc002cot.1_Silent_p.F307F	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	307	Extracellular (Potential).|PKD 1.				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						AGCCGTCTCCGAAGTCCCAGC	0.716													14	16					0	0	1	0	0
SRL	6345	broad.mit.edu	37	16	4242610	4242610	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr16:4242610G>A	uc002cvz.3	-	6	979	c.966C>T	c.(964-966)ATC>ATT	p.I322I	SRL_uc002cvy.3_RNA	NM_001098814	NP_001092284	Q86TD4	SRCA_HUMAN	sarcalumenin	781						sarcoplasmic reticulum lumen	GTP binding|GTPase activity			ovary(3)|skin(2)	5						GTCTGTTCTCGATCACCTGAT	0.552													54	118					0	0	1	0	0
ABCC6	368	broad.mit.edu	37	16	16276740	16276740	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr16:16276740G>A	uc002den.3	-	16	2028	c.1991C>T	c.(1990-1992)CCA>CTA	p.P664L	ABCC6_uc010bvo.2_RNA	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	664	ATP 1 (Potential).|ABC transporter 1.|Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		TGCCCCCACTGGACCGACAAC	0.632													26	69					0	0	1	0	0
XYLT1	64131	broad.mit.edu	37	16	17211736	17211736	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr16:17211736C>T	uc002dfa.2	-	11	2409	c.2324G>A	c.(2323-2325)GGA>GAA	p.G775E		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	775	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						CACATTAGGTCCCTTCCCCCA	0.567													26	46					0	0	1	0	0
TMC5	79838	broad.mit.edu	37	16	19474601	19474601	+	Splice_Site	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr16:19474601G>A	uc002dgc.3	+	7	1898	c.1149_splice	c.e7-1	p.R383_splice	TMC5_uc010vaq.1_Splice_Site_p.R383_splice|TMC5_uc002dgb.3_Splice_Site_p.R383_splice|TMC5_uc010var.1_Splice_Site_p.R383_splice|TMC5_uc002dgd.1_Splice_Site_p.R137_splice|TMC5_uc002dge.3_Splice_Site_p.R137_splice|TMC5_uc002dgf.3_Splice_Site_p.W66_splice|TMC5_uc002dgg.3_Splice_Site_p.R24_splice	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a							integral to membrane				skin(1)	1						GTTCCCTACAGGAAAATAGTT	0.313													18	43					0	0	1	0	0
PRKCB	5579	broad.mit.edu	37	16	24196460	24196460	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr16:24196460C>T	uc002dmd.2	+	14	1759	c.1562C>T	c.(1561-1563)TCC>TTC	p.S521F	PRKCB_uc002dme.2_Missense_Mutation_p.S521F	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	521	Protein kinase.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	TATGGGAAGTCCGTGGATTGG	0.453													28	54					0	0	1	0	0
PRRT2	112476	broad.mit.edu	37	16	29825173	29825173	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr16:29825173G>A	uc002due.3	+	2	1099	c.798G>A	c.(796-798)CGG>CGA	p.R266R	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|uc002duc.1_5'Flank|PRRT2_uc002dud.2_Silent_p.R266R|PRRT2_uc002duf.1_Silent_p.R266R|C16orf53_uc002dug.3_5'Flank	NM_145239	NP_660282	Q7Z6L0	PRRT2_HUMAN	proline-rich transmembrane protein 2	266	Extracellular (Potential).				response to biotic stimulus	integral to membrane					0						AGAAACCTCGGGACTACATCA	0.627													33	47					0	0	1	0	0
FBRS	64319	broad.mit.edu	37	16	30680646	30680646	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr16:30680646C>T	uc002dzd.3	+	12	1326	c.1063C>T	c.(1063-1065)CGC>TGC	p.R355C	FBRS_uc002dzc.3_Missense_Mutation_p.R267C	NM_001105079	NP_001098549	Q9HAH7	FBRS_HUMAN	fibrosin	355	Pro-rich.									ovary(1)	1			Colorectal(24;0.103)			CCCACCAGATCGCTGTGCTGG	0.622													10	17					0	0	1	0	0
SRCAP	10847	broad.mit.edu	37	16	30748499	30748499	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr16:30748499C>T	uc002dze.1	+	34	7523	c.7138C>T	c.(7138-7140)CGG>TGG	p.R2380W	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.R2175W	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2380					interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			AGGCACCCACCGGCGCAGTAA	0.652													32	44					0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	32070612	32070612	+	RNA	SNP	A	C	C			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr16:32070612A>C	uc002ecv.1	+	1		c.65A>C								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:TRH1-22.																		GGTCTCCTGCAAGGCTTCTGG	0.552													6	75					0	0	1	0	0
PHKB	5257	broad.mit.edu	37	16	47730390	47730390	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr16:47730390C>T	uc002eev.3	+	29	3046	c.2994C>T	c.(2992-2994)ATC>ATT	p.I998I	PHKB_uc002eeu.3_Silent_p.I991I|PHKB_uc002eew.3_Silent_p.I239I	NM_000293	NP_000284	Q93100	KPBB_HUMAN	phosphorylase kinase, beta isoform a	998					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity			ovary(1)|large_intestine(1)|breast(1)	3		all_cancers(37;0.00447)|all_lung(18;0.00616)|Lung NSC(13;0.0418)|Breast(268;0.203)				ACAGACAGATCGTTGTAGAGG	0.423													35	26					0	0	1	0	0
CPNE2	221184	broad.mit.edu	37	16	57159853	57159853	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr16:57159853G>A	uc002eks.1	+	11	1238	c.1009G>A	c.(1009-1011)GAA>AAA	p.E337K	CPNE2_uc010cct.1_Missense_Mutation_p.E363K|CPNE2_uc010ccu.1_Missense_Mutation_p.E337K|CPNE2_uc002ekt.1_Missense_Mutation_p.E95K	NM_152727	NP_689940	Q96FN4	CPNE2_HUMAN	copine II	337	VWFA.									central_nervous_system(1)|skin(1)	2		all_neural(199;0.224)				GGGCACCAACGAATATCTGTC	0.522													18	45					0	0	1	0	0
CCDC102A	92922	broad.mit.edu	37	16	57559838	57559838	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr16:57559838G>A	uc002elw.2	-	3	1000	c.787C>T	c.(787-789)CAG>TAG	p.Q263*		NM_033212	NP_149989	Q96A19	C102A_HUMAN	coiled-coil domain containing 102A	263	Potential.									ovary(1)	1						AGCACCTTCTGGGACTCATCC	0.667													12	49					0	0	1	0	0
CDH8	1006	broad.mit.edu	37	16	61747829	61747829	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr16:61747829C>T	uc002eog.1	-	10	1822	c.1570G>A	c.(1570-1572)GAT>AAT	p.D524N		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	524	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		TTTTTGGGATCATCTTTGTCC	0.378													34	31					0	0	1	0	0
SNTB2	6645	broad.mit.edu	37	16	69333599	69333599	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr16:69333599C>T	uc002ewu.2	+	6	1472	c.1452C>T	c.(1450-1452)CCC>CCT	p.P484P	SNTB2_uc010cfk.2_5'Flank	NM_006750	NP_006741	Q13425	SNTB2_HUMAN	basic beta 2 syntrophin	484	SU.					cell junction|dystrophin-associated glycoprotein complex|membrane fraction|microtubule|transport vesicle membrane	actin binding|calmodulin binding|protein binding				0		Ovarian(137;0.101)		OV - Ovarian serous cystadenocarcinoma(108;0.208)		ACCGCTACCCCTTTGAAAGGC	0.453													17	58					0	0	1	0	0
PRPF8	10594	broad.mit.edu	37	17	1562680	1562680	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:1562680G>A	uc002fte.2	-	32	5223	c.5109C>T	c.(5107-5109)ATC>ATT	p.I1703I		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	1703	Involved in interaction with pre-mRNA 5' splice site.					catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		GGTCAATGGCGATGAGTACAC	0.418													51	81					0	0	1	0	0
OR1D2	4991	broad.mit.edu	37	17	2996169	2996169	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:2996169C>T	uc010vrb.1	-	1	122	c.122G>A	c.(121-123)GGA>GAA	p.G41E		NM_002548	NP_002539	P34982	OR1D2_HUMAN	olfactory receptor, family 1, subfamily D,	41	Helical; Name=1; (Potential).				cellular component movement|chemotaxis|protein import into nucleus, translocation|sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						GAGCACATTTCCCACCACCGT	0.547													48	78					0	0	1	0	0
OR3A2	4995	broad.mit.edu	37	17	3181486	3181486	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:3181486G>A	uc002fvg.2	-	1	783	c.744C>T	c.(742-744)TCC>TCT	p.S248S		NM_002551	NP_002542	P47893	OR3A2_HUMAN	olfactory receptor, family 3, subfamily A,	248	Helical; Name=6; (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						AGCCACACGTGGAGAAGGCCT	0.522													30	41					0	0	1	0	0
PITPNM3	83394	broad.mit.edu	37	17	6386961	6386961	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:6386961G>A	uc002gdd.3	-	6	614	c.463C>T	c.(463-465)CAC>TAC	p.H155Y	PITPNM3_uc010cln.2_Missense_Mutation_p.H119Y|PITPNM3_uc002gdc.3_5'Flank	NM_031220	NP_112497	Q9BZ71	PITM3_HUMAN	PITPNM family member 3 isoform 1	155					phosphatidylinositol metabolic process	endomembrane system|integral to membrane	calcium ion binding|lipid binding|phosphatidylinositol transporter activity|receptor tyrosine kinase binding			ovary(2)|central_nervous_system(2)	4				Colorectal(2;0.000372)|READ - Rectum adenocarcinoma(2;0.0276)|LUAD - Lung adenocarcinoma(2;0.0836)|COAD - Colon adenocarcinoma(228;0.185)		CTGAAGGTGTGGATGTCGGCT	0.627													18	54					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7668868	7668868	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:7668868G>A	uc002giu.1	+	20	3510	c.3496G>A	c.(3496-3498)GAT>AAT	p.D1166N		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1166	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				ACTTCTGGAAGATTTCGAATT	0.483													33	49					0	0	1	0	0
GUCY2D	3000	broad.mit.edu	37	17	7912824	7912824	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:7912824G>A	uc002gjt.2	+	8	1743	c.1669G>A	c.(1669-1671)GGA>AGA	p.G557R		NM_000180	NP_000171	Q02846	GUC2D_HUMAN	guanylate cyclase 2D, membrane (retina-specific)	557	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			skin(1)	1		Prostate(122;0.157)				TTTGCTGCAGGGAGACAGGGT	0.557													36	89					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10322317	10322317	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:10322317G>A	uc002gmm.2	-	4	336	c.241C>T	c.(241-243)CCT>TCT	p.P81S	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	81	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						GGGTTCATAGGGAAGACTTGG	0.378									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				34	50					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10402067	10402067	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:10402067C>T	uc002gmo.2	-	30	4151	c.4057G>A	c.(4057-4059)GAG>AAG	p.E1353K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1353	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TCCTGCTCCTCCTCATACTGT	0.552													49	86					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10419525	10419525	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:10419525C>T	uc002gmo.2	-	4	433	c.339G>A	c.(337-339)TGG>TGA	p.W113*	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	113	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CGTAGATCATCCAGGCTGCGT	0.438													63	62					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10435045	10435045	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:10435045C>T	uc010coi.2	-	22	2730	c.2602G>A	c.(2602-2604)GAA>AAA	p.E868K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E868K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	868	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TTGGCAAGTTCGTCTTTAATT	0.428													23	53					0	0	1	0	0
TBC1D28	254272	broad.mit.edu	37	17	18544609	18544609	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:18544609G>A	uc002gud.2	-	4	469	c.57C>T	c.(55-57)ATC>ATT	p.I19I		NM_001039397	NP_001034486	Q2M2D7	TBC28_HUMAN	TBC1 domain family, member 28	19						intracellular	Rab GTPase activator activity			ovary(1)	1						ACTTAGTAATGATGATATTGC	0.587													21	37					0	0	1	0	0
RNF112	7732	broad.mit.edu	37	17	19318082	19318082	+	Splice_Site	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:19318082G>A	uc010vyw.1	+	10	1208	c.1009_splice	c.e10-1	p.R337_splice	RNF112_uc010vyv.1_Splice_Site_p.R337_splice|RNF112_uc010vyx.1_Splice_Site_p.R220_splice	NM_007148	NP_009079	Q7Z5V9	Q7Z5V9_HUMAN	ring finger protein 112								GTP binding|GTPase activity|zinc ion binding			ovary(2)	2						CTGCCTCACAGAGATTGTCTG	0.637													10	27					0	0	1	0	0
RNF112	7732	broad.mit.edu	37	17	19319186	19319186	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:19319186G>A	uc010vyw.1	+	14	1793	c.1594G>A	c.(1594-1596)GCC>ACC	p.A532T	RNF112_uc010vyv.1_Missense_Mutation_p.A533T	NM_007148	NP_009079	Q7Z5V9	Q7Z5V9_HUMAN	ring finger protein 112	532							GTP binding|GTPase activity|zinc ion binding			ovary(2)	2						GCAGGCCACGGCCAAGGCCTT	0.642													7	22					0	0	1	0	0
SLC47A2	146802	broad.mit.edu	37	17	19619821	19619821	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:19619821G>A	uc002gwe.3	-	1	223	c.48C>T	c.(46-48)TGC>TGT	p.C16C	SLC47A2_uc002gwg.3_Silent_p.C16C|SLC47A2_uc002gwf.3_Silent_p.C16C|SLC47A2_uc002gwh.3_RNA|SLC47A2_uc002gwi.2_Intron|SLC47A2_uc010cqs.1_RNA|SLC47A2_uc010cqt.1_5'Flank	NM_152908	NP_690872	Q86VL8	S47A2_HUMAN	solute carrier family 47, member 2 isoform 1	16	Cytoplasmic (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.3e-05)|all_epithelial(12;0.0024)|Breast(13;0.245)					TGAGGGCAGGGCAGCAGCCCC	0.662													9	19					0	0	1	0	0
MAP2K3	5606	broad.mit.edu	37	17	21205466	21205466	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:21205466G>A	uc002gys.2	+	6	676	c.411G>A	c.(409-411)TGG>TGA	p.W137*	MAP2K3_uc002gyt.2_Nonsense_Mutation_p.W108*|MAP2K3_uc002gyu.2_Nonsense_Mutation_p.W108*	NM_145109	NP_659731	P46734	MP2K3_HUMAN	mitogen-activated protein kinase kinase 3	137	Protein kinase.				activation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of transcription, DNA-dependent|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0				COAD - Colon adenocarcinoma(3;0.0131)|Colorectal(15;0.0553)		GAGACGTGTGGATCTGCATGG	0.507													6	55					0	0	1	0	0
NEK8	284086	broad.mit.edu	37	17	27068436	27068436	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:27068436G>A	uc002hcp.2	+	14	1897	c.1897G>A	c.(1897-1899)GAA>AAA	p.E633K	TRAF4_uc002hcq.1_5'Flank|TRAF4_uc002hcs.2_5'Flank	NM_178170	NP_835464	Q86SG6	NEK8_HUMAN	NIMA-related kinase 8	633	RCC1 5.					cytoplasm|primary cilium	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|pancreas(1)|liver(1)|skin(1)	6	Lung NSC(42;0.0158)					GGCAGAGAGCGAAGTGTACTC	0.622													17	23					0	0	1	0	0
SSH2	85464	broad.mit.edu	37	17	27959127	27959127	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:27959127G>A	uc002heo.1	-	15	3004	c.3004C>T	c.(3004-3006)CCT>TCT	p.P1002S	SSH2_uc010wbh.1_Missense_Mutation_p.P1029S	NM_033389	NP_203747	Q76I76	SSH2_HUMAN	slingshot 2	1002					actin cytoskeleton organization|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			skin(2)	2						AGGGGAAGAGGGACTGCTTGT	0.502													27	42					0	0	1	0	0
TMEM132E	124842	broad.mit.edu	37	17	32956214	32956214	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:32956214C>T	uc002hif.2	+	5	1387	c.1059C>T	c.(1057-1059)CCC>CCT	p.P353P		NM_207313	NP_997196	Q6IEE7	T132E_HUMAN	transmembrane protein 132E precursor	353	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(366;0.231)		CCATCCTGCCCCTGGCCATGG	0.577													14	34					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	37188206	37188206	+	RNA	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:37188206C>T	uc002hrd.1	+	1		c.2048C>T								Homo sapiens cDNA FLJ43826 fis, clone TESTI4002703.																		GGGTCAGGCTCAGCATTCAAA	0.493													31	58					0	0	1	0	0
TNS4	84951	broad.mit.edu	37	17	38638424	38638424	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:38638424G>A	uc010cxb.2	-	8	1793	c.1629C>T	c.(1627-1629)ATC>ATT	p.I543I	TNS4_uc002huu.3_5'Flank	NM_032865	NP_116254	Q8IZW8	TENS4_HUMAN	tensin 4 precursor	543	SH2.				apoptosis|protein localization	cytoplasm|cytoskeleton|focal adhesion	actin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(5;5.91e-05)			CCAGGGCCATGATGGAATGCT	0.587													27	33					0	0	1	0	0
KRT40	125115	broad.mit.edu	37	17	39140403	39140403	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:39140403G>A	uc010cxh.1	-	3	284	c.123C>T	c.(121-123)TCC>TCT	p.S41S	KRT40_uc002hvq.1_RNA	NM_182497	NP_872303	Q6A162	K1C40_HUMAN	type I hair keratin KA36	41	Head.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)				TCTGACATCGGGATGTAGCAC	0.577													25	42					0	0	1	0	0
KRT38	8687	broad.mit.edu	37	17	39596727	39596727	+	Silent	SNP	G	A	A	rs142182718	byFrequency	TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:39596727G>A	uc002hwq.1	-	1	870	c.447C>T	c.(445-447)CCC>CCT	p.P149P		NM_006771	NP_006762	O76015	KRT38_HUMAN	keratin 38	149	Linker 1.|Rod.					intermediate filament	structural molecule activity			skin(2)	2		Breast(137;0.000496)				ACTGGTAGTCGGGGCACACGG	0.602													36	79					0	0	1	0	0
GPATCH8	23131	broad.mit.edu	37	17	42478238	42478238	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:42478238T>A	uc002igw.1	-	8	1271	c.1207A>T	c.(1207-1209)AAA>TAA	p.K403*	GPATCH8_uc002igv.1_Nonsense_Mutation_p.K325*|GPATCH8_uc010wiz.1_Nonsense_Mutation_p.K325*	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	403						intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		GGTTTTACTTTGCAGTGTGCT	0.418											OREG0024461	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	64					0	0	1	0	0
ITGB3	3690	broad.mit.edu	37	17	45363782	45363782	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:45363782C>T	uc002ilj.2	+	5	791	c.771C>T	c.(769-771)GTC>GTT	p.V257V	ITGB3_uc002ili.1_Silent_p.V257V|ITGB3_uc010wkr.1_RNA	NM_000212	NP_000203	P05106	ITB3_HUMAN	integrin beta chain, beta 3 precursor	257	VWFA.|Extracellular (Potential).				activation of protein kinase activity|angiogenesis involved in wound healing|axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|platelet activation|platelet degranulation|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|regulation of bone resorption|smooth muscle cell migration|tube development	alphav-beta3 integrin-vitronectin complex|integrin complex|platelet alpha granule membrane	cell adhesion molecule binding|identical protein binding|platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			central_nervous_system(5)|large_intestine(1)	6					Abciximab(DB00054)|Tirofiban(DB00775)	AGGCTACAGTCTGTGATGTGA	0.328													29	35					0	0	1	0	0
B4GALNT2	124872	broad.mit.edu	37	17	47243551	47243551	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:47243551C>T	uc002ion.2	+	9	1269	c.1210C>T	c.(1210-1212)CTC>TTC	p.L404F	B4GALNT2_uc010wlt.1_Missense_Mutation_p.L318F|B4GALNT2_uc010wlu.1_Missense_Mutation_p.L344F	NM_153446	NP_703147	Q8NHY0	B4GN2_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 2	404	Lumenal (Potential).				lipid glycosylation|negative regulation of cell-cell adhesion|UDP-N-acetylgalactosamine metabolic process	integral to Golgi membrane	acetylgalactosaminyltransferase activity			large_intestine(1)|ovary(1)	2			all cancers(6;0.000316)			CGATGATTTTCTCTTCAACGA	0.488													28	46					0	0	1	0	0
SPATA20	64847	broad.mit.edu	37	17	48628487	48628487	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:48628487C>T	uc002irf.2	+	11	1605	c.1464C>T	c.(1462-1464)CTC>CTT	p.L488L	SPATA20_uc002irc.2_Silent_p.L155L|SPATA20_uc002ire.2_Silent_p.L444L|SPATA20_uc002ird.2_Silent_p.L504L|SPATA20_uc002irg.2_RNA	NM_022827	NP_073738	Q8TB22	SPT20_HUMAN	spermatogenesis associated 20	488					cell differentiation|mannose metabolic process|multicellular organismal development|spermatogenesis	extracellular region	mannose-6-phosphate isomerase activity|protein binding				0	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;9.38e-09)			TGGAGAAGCTCTTCCAGGCCC	0.627											OREG0024568	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	18					0	0	1	0	0
WFIKKN2	124857	broad.mit.edu	37	17	48917222	48917222	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:48917222C>T	uc002isv.3	+	2	1267	c.573C>T	c.(571-573)ACC>ACT	p.T191T	WFIKKN2_uc010dbu.2_Silent_p.T98T	NM_175575	NP_783165	Q8TEU8	WFKN2_HUMAN	WFIKKN2 protein	191						extracellular region	metalloendopeptidase inhibitor activity|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			CACCTGAGACCACCATGCACC	0.637													26	46					0	0	1	0	0
RNF43	54894	broad.mit.edu	37	17	56435093	56435093	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:56435093G>A	uc002iwf.2	-	8	4000	c.2044C>T	c.(2044-2046)CCC>TCC	p.P682S	RNF43_uc010wnv.1_Missense_Mutation_p.P641S|RNF43_uc002iwh.3_Missense_Mutation_p.P682S|RNF43_uc002iwg.3_Missense_Mutation_p.P682S|RNF43_uc010dcw.2_Missense_Mutation_p.P555S	NM_017763	NP_060233	Q68DV7	RNF43_HUMAN	ring finger protein 43 precursor	682	Pro-rich.|Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane|nuclear envelope	ligase activity|protein binding|zinc ion binding			ovary(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GTGTAATGGGGAAAAATCTGG	0.627													62	113					0	0	1	0	0
GPRC5C	55890	broad.mit.edu	37	17	72436023	72436023	+	Silent	SNP	C	T	T	rs145119311		TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:72436023C>T	uc002jks.2	+	1	147	c.108C>T	c.(106-108)AAC>AAT	p.N36N	GPRC5C_uc002jkp.2_Silent_p.N81N|GPRC5C_uc002jkq.2_Silent_p.N81N|GPRC5C_uc002jkr.2_Silent_p.N48N|GPRC5C_uc002jkt.2_Silent_p.N36N	NM_018653	NP_061123	Q9NQ84	GPC5C_HUMAN	G protein-coupled receptor family C, group 5,	36	Extracellular (Potential).					cytoplasmic vesicle membrane|integral to plasma membrane	G-protein coupled receptor activity|protein binding			ovary(2)|prostate(1)|central_nervous_system(1)|pancreas(1)	5						AAGGCCTCAACCCCCTGTACT	0.647													37	47					0	0	1	0	0
DNAH17	8632	broad.mit.edu	37	17	76501515	76501515	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:76501515G>A	uc010wtu.1	-	5	868	c.691C>T	c.(691-693)CTG>TTG	p.L231L						full-length cDNA clone CS0DJ002YI14 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human).											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			AGTTTGGACAGGTGGCGGCTC	0.552													23	30					0	0	1	0	0
DLGAP1	9229	broad.mit.edu	37	18	3879638	3879638	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr18:3879638G>A	uc002kmf.2	-	1	498	c.431C>T	c.(430-432)TCG>TTG	p.S144L	DLGAP1_uc010wyz.1_Missense_Mutation_p.S144L|DLGAP1_uc002kmk.2_Missense_Mutation_p.S144L|uc002kml.1_Intron	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	144					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				CTTCTGGACCGAGTGCACCAG	0.701													57	48					0	0	1	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555140	44555140	+	Silent	SNP	G	A	A	rs146322216		TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr18:44555140G>A	uc010xdb.1	-	1	1310	c.1074C>T	c.(1072-1074)GTC>GTT	p.V358V	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	358	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						CCGAGTAGGGGACCCCTTCCA	0.637													29	557					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47406790	47406790	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr18:47406790C>T	uc002leb.2	-	23	3369	c.3081G>A	c.(3079-3081)TTG>TTA	p.L1027L	MYO5B_uc002lea.2_Silent_p.L168L	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	1027	Potential.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TCTCATCTTTCAAGAGAGCAT	0.443													32	68					0	0	1	0	0
SERPINB4	6318	broad.mit.edu	37	18	61328443	61328443	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr18:61328443G>A	uc002ljg.2	-	1	34	c.8C>T	c.(7-9)TCA>TTA	p.S3L	SERPINB3_uc002lji.2_Missense_Mutation_p.S3L|SERPINB3_uc010dqa.2_Missense_Mutation_p.S3L|SERPINB3_uc010dqb.2_Missense_Mutation_p.S3L|SERPINB3_uc010dqc.2_Missense_Mutation_p.S3L			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;	3					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						TTCACTGAGTGAATTCATGGT	0.383													34	99					0	0	1	0	0
PCSK4	54760	broad.mit.edu	37	19	1487193	1487193	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:1487193C>T	uc002ltb.1	-	7	864	c.802G>A	c.(802-804)GTG>ATG	p.V268M	PCSK4_uc002lta.2_Missense_Mutation_p.V80M	NM_017573	NP_060043	Q6UW60	PCSK4_HUMAN	proprotein convertase subtilisin/kexin type 4	268	Catalytic (By similarity).				proteolysis	integral to membrane	serine-type endopeptidase activity				0		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGGCCGTCCACCGTGCGGCCG	0.697													10	20					0	0	1	0	0
TCF3	6929	broad.mit.edu	37	19	1615722	1615722	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:1615722C>T	uc002ltr.2	-	17	1616	c.1549G>A	c.(1549-1551)GAG>AAG	p.E517K	TCF3_uc002ltn.2_5'UTR|TCF3_uc002lto.2_Missense_Mutation_p.E278K|TCF3_uc002ltt.3_Missense_Mutation_p.E517K|TCF3_uc002ltq.2_Missense_Mutation_p.E466K|TCF3_uc002lts.1_Missense_Mutation_p.E433K	NM_003200	NP_003191	P15923	TFE2_HUMAN	transcription factor 3 isoform E12	517					B cell lineage commitment|B cell lineage commitment|G1 phase of mitotic cell cycle|immunoglobulin V(D)J recombination|muscle cell differentiation|positive regulation of B cell proliferation|positive regulation of cell cycle|positive regulation of muscle cell differentiation|positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus|protein complex|transcription factor complex	bHLH transcription factor binding|DNA binding|E-box binding|identical protein binding|mitogen-activated protein kinase kinase kinase binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|vitamin D response element binding			lung(2)|breast(2)|ovary(1)|large_intestine(1)|skin(1)	7		Acute lymphoblastic leukemia(61;5.94e-12)|all_hematologic(61;1.27e-07)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCTTCTTCTCCTCCTCCGAG	0.687			T	PBX1|HLF|TFPT	pre B-ALL								41	85					0	0	1	0	0
FZR1	51343	broad.mit.edu	37	19	3530836	3530836	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:3530836C>T	uc010dtk.2	+	7	735	c.701C>T	c.(700-702)TCC>TTC	p.S234F	FZR1_uc002lxt.2_Missense_Mutation_p.S234F|FZR1_uc002lxv.2_Missense_Mutation_p.S145F	NM_001136198	NP_001129670	Q9UM11	FZR_HUMAN	Fzr1 protein isoform 1	234	WD 2.				activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|DNA repair|G2/M transition DNA damage checkpoint|mitosis|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of protein catabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle	cytosol|nucleoplasm	protein binding			lung(1)|kidney(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)		TCAGTGACCTCCGTGGGCTGG	0.627													8	18					0	0	1	0	0
CREB3L3	84699	broad.mit.edu	37	19	4171136	4171136	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:4171136C>T	uc002lzl.2	+	8	1055	c.939C>T	c.(937-939)TCC>TCT	p.S313S	CREB3L3_uc002lzm.2_Silent_p.S303S|CREB3L3_uc010xib.1_Silent_p.S302S|CREB3L3_uc010xic.1_Missense_Mutation_p.H269Y	NM_032607	NP_115996	Q68CJ9	CR3L3_HUMAN	cAMP responsive element binding protein 3-like	313	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0232)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGTGCAGTCCACCAGCAAGT	0.617													17	55					0	0	1	0	0
FSD1	79187	broad.mit.edu	37	19	4306197	4306197	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:4306197G>A	uc002lzy.2	+	3	267	c.114G>A	c.(112-114)GCG>GCA	p.A38A	FSD1_uc010xie.1_Silent_p.A25A|FSD1_uc010xif.1_Missense_Mutation_p.E22K|FSD1_uc002lzz.2_Silent_p.A38A	NM_024333	NP_077309	Q9BTV5	FSD1_HUMAN	fibronectin type III and SPRY domain containing	38	Potential.				cell division|mitosis	cleavage furrow|microtubule|microtubule organizing center|nucleus				skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.034)|STAD - Stomach adenocarcinoma(1328;0.18)		CGACCCAGGCGAACTCGGCGA	0.562													66	130					0	0	1	0	0
EMR1	2015	broad.mit.edu	37	19	6913720	6913720	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:6913720C>T	uc002mfw.2	+	11	1217	c.1179C>T	c.(1177-1179)TTC>TTT	p.F393F	EMR1_uc010dvc.2_Silent_p.F393F|EMR1_uc010dvb.2_Silent_p.F341F|EMR1_uc010xji.1_Silent_p.F252F|EMR1_uc010xjj.1_Silent_p.F216F	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	393	Ser/Thr-rich.|Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					GGACTAAATTCACCAAGGAAG	0.458													40	61					0	0	1	0	0
KIAA1543	57662	broad.mit.edu	37	19	7676858	7676858	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:7676858G>A	uc002mgv.3	+	11	1580	c.1479G>A	c.(1477-1479)AAG>AAA	p.K493K	KIAA1543_uc002mgu.3_Silent_p.K520K|KIAA1543_uc002mgw.2_5'Flank	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	493	Pro-rich.				epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						GGCCCTCCAAGCCATCCCTGG	0.667													22	43					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8131142	8131142	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:8131142C>T	uc002mjf.2	-	63	8112	c.8091G>A	c.(8089-8091)GTG>GTA	p.V2697V	FBN3_uc002mje.2_Silent_p.V493V	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2697						proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						TGGCCAGGTTCACCTGGGAAG	0.652													5	9					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9010668	9010668	+	Missense_Mutation	SNP	G	A	A	rs12971602		TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:9010668G>A	uc002mkp.2	-	38	39197	c.38993C>T	c.(38992-38994)TCC>TTC	p.S12998F	MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13000	Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGGGAGGGAGGATGGAGTCCC	0.502													3	20					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9083098	9083098	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:9083098G>A	uc002mkp.2	-	1	8921	c.8717C>T	c.(8716-8718)TCT>TTT	p.S2906F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2907	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTTGGTAAAGAAGCGGACTT	0.493													15	25					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9086616	9086616	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:9086616G>A	uc002mkp.2	-	1	5403	c.5199C>T	c.(5197-5199)TCC>TCT	p.S1733S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1733	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding	p.S1733Y(1)		lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTTCAAGAGAGGAGGAGAGAG	0.493													27	41					0	0	1	0	0
ZNF560	147741	broad.mit.edu	37	19	9581118	9581118	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:9581118T>C	uc002mlp.1	-	7	608	c.398A>G	c.(397-399)AAC>AGC	p.N133S	ZNF560_uc010dwr.1_Missense_Mutation_p.N27S	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	133	KRAB 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						ACTGTACAGGTTTCTCTGAGC	0.468													38	60					0	0	1	0	0
FBXL12	54850	broad.mit.edu	37	19	9921757	9921757	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:9921757G>A	uc002mme.2	-	3	1038	c.796C>T	c.(796-798)CCA>TCA	p.P266S	FBXL12_uc002mmd.2_Missense_Mutation_p.P213S|FBXL12_uc002mmf.2_Missense_Mutation_p.P213S|FBXL12_uc002mmg.2_Missense_Mutation_p.P213S|FBXL12_uc002mmh.2_Missense_Mutation_p.P213S	NM_017703	NP_060173	Q9NXK8	FXL12_HUMAN	F-box and leucine-rich repeat protein 12	266	LRR 8.						protein binding			lung(1)|kidney(1)	2						GGCATTTCTGGGGTGACGAGG	0.662													19	17					0	0	1	0	0
TYK2	7297	broad.mit.edu	37	19	10478756	10478756	+	Missense_Mutation	SNP	G	A	A	rs150331673		TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:10478756G>A	uc002moc.3	-	5	818	c.440C>T	c.(439-441)GCC>GTC	p.A147V	TYK2_uc010dxe.2_Intron|TYK2_uc002mod.2_Missense_Mutation_p.A147V	NM_003331	NP_003322	P29597	TYK2_HUMAN	tyrosine kinase 2	147	FERM.				intracellular protein kinase cascade|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|large_intestine(2)|ovary(1)|breast(1)	9			OV - Ovarian serous cystadenocarcinoma(20;1.77e-09)|Epithelial(33;3.92e-06)|all cancers(31;8.95e-06)			CTCAAATGAGGCTGGGTCCAG	0.587													15	21					0	0	1	0	0
ELAVL3	1995	broad.mit.edu	37	19	11565659	11565659	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:11565659G>A	uc002mry.1	-	7	1166	c.786C>T	c.(784-786)ATC>ATT	p.I262I	ELAVL3_uc002mrx.1_Silent_p.I255I	NM_001420	NP_001411	Q14576	ELAV3_HUMAN	ELAV-like protein 3 isoform 1	262					cell differentiation|nervous system development		AU-rich element binding|nucleotide binding			ovary(1)|breast(1)|skin(1)	3						CATCGATGGCGATCGGCGAGA	0.572													129	218					0	0	1	0	0
ZNF442	79973	broad.mit.edu	37	19	12461104	12461104	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:12461104G>A	uc002mtr.1	-	6	1906	c.1295C>T	c.(1294-1296)CCC>CTC	p.P432L	ZNF442_uc010xmk.1_Missense_Mutation_p.P363L	NM_030824	NP_110451	Q9H7R0	ZN442_HUMAN	zinc finger protein 442	432					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(2)|breast(1)|kidney(1)	4						ACATTCATAGGGTTTCTCACC	0.408													25	36					0	0	1	0	0
GIPC1	10755	broad.mit.edu	37	19	14591461	14591461	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:14591461C>A	uc002myt.2	-	5	688	c.418G>T	c.(418-420)GAG>TAG	p.E140*	GIPC1_uc002myu.2_Nonsense_Mutation_p.E140*|GIPC1_uc002myv.2_Nonsense_Mutation_p.E43*|GIPC1_uc002myw.2_Nonsense_Mutation_p.E43*|GIPC1_uc002myx.2_Nonsense_Mutation_p.E140*|GIPC1_uc002myy.2_Nonsense_Mutation_p.E43*	NM_005716	NP_005707	O14908	GIPC1_HUMAN	regulator of G-protein signalling 19 interacting	140	PDZ.				endothelial cell migration|G-protein coupled receptor protein signaling pathway|glutamate secretion|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|protein targeting|regulation of protein stability|regulation of synaptic plasticity|synaptic transmission	cell cortex|dendritic shaft|dendritic spine|membrane fraction|soluble fraction|synaptic vesicle|vesicle membrane	actin binding|myosin binding|protein homodimerization activity|receptor binding				0						AGTGCATCCTCCGACTTGAAC	0.647											OREG0025316	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	47	64					6.27289e-28	6.47969e-28	1	1	0
AKAP8	10270	broad.mit.edu	37	19	15483068	15483068	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:15483068G>A	uc002nav.2	-	6	1013	c.952C>T	c.(952-954)CTG>TTG	p.L318L	AKAP8_uc010dzy.2_5'UTR|AKAP8_uc010dzz.1_RNA|AKAP8_uc010xog.1_Silent_p.L132L	NM_005858	NP_005849	O43823	AKAP8_HUMAN	A-kinase anchor protein 8	318					signal transduction	nuclear matrix				ovary(1)|breast(1)	2						ACCCGGGCCAGTTTGGTGTCT	0.582													30	42					0	0	1	0	0
AKAP8L	26993	broad.mit.edu	37	19	15507985	15507985	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:15507985G>A	uc002naw.1	-	12	1611	c.1512C>T	c.(1510-1512)ACC>ACT	p.T504T	AKAP8L_uc002nax.1_RNA|AKAP8L_uc010xoh.1_Silent_p.T443T	NM_014371	NP_055186	Q9ULX6	AKP8L_HUMAN	A kinase (PRKA) anchor protein 8-like	504	C2H2 AKAP95-type 2.					cytoplasm|nuclear matrix	DEAD/H-box RNA helicase binding|DNA binding|zinc ion binding			ovary(1)	1						TGTGATCCATGGTCTTCAGAT	0.552													47	93					0	0	1	0	0
MYO9B	4650	broad.mit.edu	37	19	17212838	17212838	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:17212838G>T	uc010eak.2	+	2	463	c.311G>T	c.(310-312)GGC>GTC	p.G104V	MYO9B_uc002nfi.2_Missense_Mutation_p.G104V|MYO9B_uc002nfj.1_Missense_Mutation_p.G104V	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	104	Ras-associating.|Myosin head-like.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						CAGGAGGATGGCTACTACTTC	0.652													23	32					6.21321e-17	6.37137e-17	1	1	0
LPAR2	9170	broad.mit.edu	37	19	19738055	19738055	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:19738055G>A	uc002nnb.3	-	2	178	c.39C>T	c.(37-39)ATC>ATT	p.I13I	LPAR2_uc002nna.3_Silent_p.I13I|LPAR2_uc002nnc.3_Silent_p.I13I	NM_004720	NP_004711	Q9HBW0	LPAR2_HUMAN	lysophosphatidic acid receptor 2	13	Extracellular (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	cell surface|integral to plasma membrane	LIM domain binding|lipid binding			ovary(1)|breast(1)	2						AGAAGAAGCCGATGGTCTCGT	0.587													25	40					0	0	1	0	0
UPK1A	11045	broad.mit.edu	37	19	36166856	36166856	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:36166856G>A	uc002oaw.2	+	5	583	c.583G>A	c.(583-585)GGA>AGA	p.G195R	UPK1A_uc010eeh.2_Missense_Mutation_p.G195R|uc002oax.1_5'Flank	NM_007000	NP_008931	O00322	UPK1A_HUMAN	uroplakin 1A	195	Extracellular (Potential).				epithelial cell differentiation|protein oligomerization	endoplasmic reticulum|integral to membrane	monosaccharide binding|protein homodimerization activity				0	all_lung(56;2.22e-07)|Lung NSC(56;3.47e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TCGCCGGACGGGAAACTTCAT	0.597													23	54					0	0	1	0	0
NFKBID	84807	broad.mit.edu	37	19	36380805	36380806	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:36380805_36380806GG>AA	uc002oci.1	-	11	1448_1449	c.874_875CC>TT	c.(874-876)CCG>TTG	p.P292L	NFKBID_uc002och.1_Missense_Mutation_p.P129L|NFKBID_uc002ocj.1_Missense_Mutation_p.P307L	NM_139239	NP_640332	Q8NI38	IKBD_HUMAN	nuclear factor of kappa light polypeptide gene	292					inflammatory response	nucleus					0						CTCAGGGCCCGGCCCGGGCCGC	0.688													42	78					0	0	1	0	0
ZNF568	374900	broad.mit.edu	37	19	37488226	37488226	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:37488226C>T	uc010efg.2	+	10	2148	c.1591C>T	c.(1591-1593)CGT>TGT	p.R531C	ZNF568_uc010xtn.1_Missense_Mutation_p.R469C|uc010efi.2_Missense_Mutation_p.R349C|uc010efj.2_Missense_Mutation_p.R349C			Q3ZCX4	ZN568_HUMAN	SubName: Full=cDNA FLJ57578, moderately similar to Mus musculus zinc finger protein 568 (Zfp568), mRNA;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GAAGTCCTTTCGTCGTGGCTC	0.443													7	10					0	0	1	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38572878	38572878	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:38572878T>C	uc002ohk.2	+	3	1182	c.673T>C	c.(673-675)TTC>CTC	p.F225L		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	225					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			CCTGAACGAGTTCCGCAGCGA	0.701													20	80					0	0	1	0	0
IL28A	282616	broad.mit.edu	37	19	39760185	39760185	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:39760185G>A	uc002oku.1	+	4	380	c.328G>A	c.(328-330)GAG>AAG	p.E110K		NM_172138	NP_742150	Q8IZJ0	IL28A_HUMAN	interleukin 28A precursor	110					response to virus	extracellular space	cytokine activity			ovary(1)|skin(1)	2	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;5.39e-26)|all cancers(26;4.1e-23)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			GAAGGTTCTGGAGGCCACCGC	0.517													24	45					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40419772	40419773	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:40419772_40419773GG>AT	uc002omp.3	-	6	3229_3230	c.3221_3222CC>AT	c.(3220-3222)CCC>CAT	p.P1074H		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1074	VWFD 2.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			ACTCCCGGAAGGGCCCCTTGGG	0.644													40	79					0	0	1	0	0
CYP2F1	1572	broad.mit.edu	37	19	41622398	41622398	+	Silent	SNP	G	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:41622398G>T	uc002opu.1	+	3	266	c.210G>T	c.(208-210)CTG>CTT	p.L70L	CYP2F1_uc010xvw.1_5'UTR|CYP2F1_uc010xvv.1_Silent_p.L70L|CYP2F1_uc002opv.1_RNA	NM_000774	NP_000765	P24903	CP2F1_HUMAN	cytochrome P450, family 2, subfamily F,	70					naphthalene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0						CAGTGCACCTGGGACCCAGGC	0.617													40	78					2.40579e-17	2.47152e-17	1	1	0
SYMPK	8189	broad.mit.edu	37	19	46351038	46351038	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:46351038G>A	uc002pdn.2	-	7	893	c.648C>T	c.(646-648)ATC>ATT	p.I216I	SYMPK_uc002pdo.1_Silent_p.I216I|SYMPK_uc002pdp.1_Silent_p.I216I|SYMPK_uc002pdq.1_Silent_p.I216I	NM_004819	NP_004810	Q92797	SYMPK_HUMAN	symplekin	216					cell adhesion|mRNA processing	cytoplasm|cytoskeleton|nucleoplasm|tight junction	protein binding			ovary(1)	1		all_neural(266;0.0299)|Ovarian(192;0.0308)		OV - Ovarian serous cystadenocarcinoma(262;0.00509)|GBM - Glioblastoma multiforme(486;0.0593)		GGTCACGAGGGATGCGGTCCA	0.597													20	36					0	0	1	0	0
CRX	1406	broad.mit.edu	37	19	48343042	48343042	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:48343042C>T	uc002phq.3	+	4	922	c.718C>T	c.(718-720)CCC>TCC	p.P240S		NM_000554	NP_000545	O43186	CRX_HUMAN	cone-rod homeobox protein	240					organ morphogenesis|response to stimulus|visual perception		leucine zipper domain binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|central_nervous_system(1)	2		all_cancers(25;2.76e-09)|all_epithelial(76;7.01e-07)|all_lung(116;2.48e-06)|Lung NSC(112;5.15e-06)|Ovarian(192;0.0139)|all_neural(266;0.0146)|Breast(70;0.133)		OV - Ovarian serous cystadenocarcinoma(262;0.000266)|all cancers(93;0.000788)|Epithelial(262;0.0226)|GBM - Glioblastoma multiforme(486;0.0521)		CCTCTCTGGCCCCTCCGTGGG	0.647													102	136					0	0	1	0	0
CPT1C	126129	broad.mit.edu	37	19	50214030	50214030	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:50214030C>T	uc002ppj.2	+	15	1987	c.1782C>T	c.(1780-1782)TTC>TTT	p.F594F	CPT1C_uc002ppl.3_3'UTR|CPT1C_uc002ppi.2_Silent_p.F511F|CPT1C_uc002ppk.2_Silent_p.F583F|CPT1C_uc010eng.2_Silent_p.F594F|CPT1C_uc010enh.2_Silent_p.F594F|CPT1C_uc010ybc.1_3'UTR|CPT1C_uc010eni.1_Silent_p.F251F	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	594	Cytoplasmic (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		CTCGCTTATTCCTGGAAGGCC	0.602													13	57					0	0	1	0	0
LRRC4B	94030	broad.mit.edu	37	19	51021683	51021683	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:51021683C>T	uc002pss.2	-	3	1424	c.1287G>A	c.(1285-1287)CAG>CAA	p.Q429Q		NM_001080457	NP_001073926	Q9NT99	LRC4B_HUMAN	leucine rich repeat containing 4B precursor	429	Extracellular (Potential).|Ig-like C2-type.					cell junction|integral to membrane|presynaptic membrane				central_nervous_system(1)|skin(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00284)|GBM - Glioblastoma multiforme(134;0.0188)		GGCCCGTGTCCTGCACGGTGA	0.617													27	51					0	0	1	0	0
ZNF808	388558	broad.mit.edu	37	19	53056775	53056775	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:53056775C>T	uc010epq.1	+	5	783	c.606C>T	c.(604-606)ATC>ATT	p.I202I	ZNF808_uc002pzq.2_RNA|ZNF808_uc010epr.1_5'Flank	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	zinc finger protein 808	202					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		GGCCCCAAATCCATATTTCTA	0.368													32	52					0	0	1	0	0
NLRP12	91662	broad.mit.edu	37	19	54301522	54301522	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:54301522G>A	uc002qch.3	-	8	3122	c.2902C>T	c.(2902-2904)CCC>TCC	p.P968S	NLRP12_uc010eqw.2_Intron|NLRP12_uc002qci.3_Intron|NLRP12_uc002qcj.3_Missense_Mutation_p.P969S|NLRP12_uc002qck.3_Intron|NLRP12_uc010eqx.2_Intron	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	968					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CTGCAGGCGGGATGTTGCAGC	0.592													33	49					0	0	1	0	0
NLRP2	55655	broad.mit.edu	37	19	55481495	55481495	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:55481495G>A	uc002qij.2	+	2	198	c.112G>A	c.(112-114)GAG>AAG	p.E38K	NLRP2_uc010yfp.1_Missense_Mutation_p.E38K|NLRP2_uc010esn.2_Missense_Mutation_p.E38K|NLRP2_uc010eso.2_Missense_Mutation_p.E38K|NLRP2_uc010esp.2_Missense_Mutation_p.E38K	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	38	DAPIN.				apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		CCTGGCACACGAGCTCCAGAA	0.557													29	48					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56539610	56539610	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:56539610C>T	uc002qmj.2	+	7	2011	c.2011C>T	c.(2011-2013)CTG>TTG	p.L671L	NLRP5_uc002qmi.2_Silent_p.L652L	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	671						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		CTGGGTCTCTCTGTTGGGTCA	0.577													39	71					0	0	1	0	0
ZNF71	58491	broad.mit.edu	37	19	57133236	57133236	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:57133236C>T	uc002qnm.3	+	3	819	c.581C>T	c.(580-582)GCC>GTC	p.A194V		NM_021216	NP_067039	Q9NQZ8	ZNF71_HUMAN	zinc finger protein 71	194	C2H2-type 3.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(193;0.062)|Lung(386;0.0681)|LUSC - Lung squamous cell carcinoma(496;0.18)		TGCGGCAAGGCCTTCAGCCAG	0.642													24	42					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57334169	57334169	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:57334169C>T	uc002qnu.2	-	3	868	c.517G>A	c.(517-519)GAC>AAC	p.D173N	ZIM2_uc010ygq.1_5'UTR|ZIM2_uc010ygr.1_5'UTR|ZIM2_uc002qnr.2_Missense_Mutation_p.D48N|ZIM2_uc002qnq.2_Missense_Mutation_p.D48N|ZIM2_uc010etp.2_Missense_Mutation_p.D48N|ZIM2_uc010ygs.1_Missense_Mutation_p.D48N|PEG3_uc002qnt.2_Missense_Mutation_p.D174N|PEG3_uc002qnv.2_Missense_Mutation_p.D173N|PEG3_uc002qnw.2_Missense_Mutation_p.D48N|PEG3_uc002qnx.2_Missense_Mutation_p.D47N|PEG3_uc010etr.2_Missense_Mutation_p.D173N	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	173					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		GGCTCCATGTCTCTGCTTCTG	0.532													12	23					0	0	1	0	0
ZNF530	348327	broad.mit.edu	37	19	58117725	58117725	+	Missense_Mutation	SNP	C	T	T	rs144027172	by1000genomes	TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:58117725C>T	uc002qpk.2	+	3	1052	c.832C>T	c.(832-834)CGC>TGC	p.R278C	ZNF547_uc002qpm.3_Intron|ZNF530_uc002qpl.2_RNA	NM_020880	NP_065931	Q6P9A1	ZN530_HUMAN	zinc finger protein 530	278	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0443)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		ATCATTTAGTCGCAAAACTCA	0.438													35	43					0	0	1	0	0
SLC27A5	10998	broad.mit.edu	37	19	59010865	59010865	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr19:59010865G>A	uc002qtc.2	-	7	1771	c.1661C>T	c.(1660-1662)ACC>ATC	p.T554I	SLC27A5_uc002qtb.2_5'Flank	NM_012254	NP_036386	Q9Y2P5	S27A5_HUMAN	solute carrier family 27 (fatty acid	554	Cytoplasmic (Probable).				bile acid and bile salt transport|bile acid biosynthetic process|very long-chain fatty acid metabolic process	endoplasmic reticulum membrane|integral to membrane	ATP binding|cholate-CoA ligase activity|long-chain fatty acid-CoA ligase activity				0		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.181)		GGACCGGAAGGTGTCCCCGAG	0.657													29	28					0	0	1	0	0
TPO	7173	broad.mit.edu	37	2	1437288	1437288	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:1437288G>A	uc002qww.2	+	4	349	c.258G>A	c.(256-258)GTG>GTA	p.V86V	TPO_uc010ewj.2_Intron|TPO_uc010yin.1_Silent_p.V86V|TPO_uc002qwu.2_Silent_p.V86V|TPO_uc002qwr.2_Silent_p.V86V|TPO_uc002qwx.2_Silent_p.V86V|TPO_uc010yio.1_Silent_p.V86V|TPO_uc010yip.1_Silent_p.V86V	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	86	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	CAAGCGGAGTGATTGCCCGAG	0.418													15	26					0	0	1	0	0
KIDINS220	57498	broad.mit.edu	37	2	8873701	8873701	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:8873701G>A	uc002qzc.2	-	29	4108	c.3926C>T	c.(3925-3927)TCC>TTC	p.S1309F	KIDINS220_uc010yiv.1_Missense_Mutation_p.S1018F|KIDINS220_uc002qzd.2_Missense_Mutation_p.S1210F|KIDINS220_uc002qzb.2_Missense_Mutation_p.S163F	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	1309	Cytoplasmic (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					CTCGTTGTGGGAAGCGCGGCG	0.612													41	68					0	0	1	0	0
CPSF3	51692	broad.mit.edu	37	2	9570070	9570070	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:9570070C>T	uc002qzo.1	+	3	168	c.133C>T	c.(133-135)CCT>TCT	p.P45S	CPSF3_uc010ewx.1_Missense_Mutation_p.P45S|CPSF3_uc002qzp.1_Missense_Mutation_p.P8S	NM_016207	NP_057291	Q9UKF6	CPSF3_HUMAN	cleavage and polyadenylation specific factor 3,	45					histone mRNA 3'-end processing|mRNA cleavage|mRNA export from nucleus|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex|ribonucleoprotein complex	5'-3' exonuclease activity|endoribonuclease activity|metal ion binding|protein binding|RNA binding			breast(2)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)	all_cancers(51;2.39e-25)|all_epithelial(98;8.75e-19)|Lung NSC(108;2.38e-06)|Ovarian(717;0.0308)		all cancers(51;2.2e-40)|Epithelial(75;6.71e-35)|OV - Ovarian serous cystadenocarcinoma(76;4.35e-21)|STAD - Stomach adenocarcinoma(1183;0.00644)		TGGGATCCACCCTGGCCTAGA	0.368													29	47					0	0	1	0	0
CAD	790	broad.mit.edu	37	2	27455482	27455482	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:27455482C>T	uc002rji.2	+	18	2974	c.2812C>T	c.(2812-2814)CTT>TTT	p.L938F	CAD_uc010eyw.2_Missense_Mutation_p.L875F	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	938	CPSase B.|CPSase (Carbamoyl-phosphate synthase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	TGTCCTAGTCCTTGGCTCTGG	0.512													22	76					0	0	1	0	0
CAPN13	92291	broad.mit.edu	37	2	30954253	30954253	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:30954253T>C	uc002rnn.2	-	20	2116	c.1940A>G	c.(1939-1941)AAC>AGC	p.N647S	CAPN13_uc002rnm.2_RNA	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	647	EF-hand 2.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					CTTAGAGAGGTTGCGGAAGGT	0.562													10	17					0	0	1	0	0
CAPN13	92291	broad.mit.edu	37	2	30966311	30966311	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:30966311C>T	uc002rnn.2	-	12	1559	c.1383G>A	c.(1381-1383)CAG>CAA	p.Q461Q	CAPN13_uc002rnm.2_RNA|CAPN13_uc002rno.2_Silent_p.Q15Q	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	461					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					TTCTCCGTGTCTGTGCAACCA	0.453													55	106					0	0	1	0	0
TTC27	55622	broad.mit.edu	37	2	33036137	33036137	+	Missense_Mutation	SNP	G	A	A	rs147021005		TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:33036137G>A	uc002rom.2	+	17	2276	c.2045G>A	c.(2044-2046)CGA>CAA	p.R682Q	TTC27_uc010ymx.1_Missense_Mutation_p.R632Q|TTC27_uc002ron.2_RNA	NM_017735	NP_060205	Q6P3X3	TTC27_HUMAN	tetratricopeptide repeat domain 27	682							protein binding			central_nervous_system(1)	1						ATGACTGATCGAAGTGGAGAT	0.408													28	30					0	0	1	0	0
HEATR5B	54497	broad.mit.edu	37	2	37232880	37232880	+	Silent	SNP	A	G	G			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:37232880A>G	uc002rpp.1	-	30	4896	c.4800T>C	c.(4798-4800)TGT>TGC	p.C1600C	HEATR5B_uc010ezy.1_Silent_p.C184C	NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	1600							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				GTCTAGGGGAACAAAGAAACT	0.393													13	37					0	0	1	0	0
HEATR5B	54497	broad.mit.edu	37	2	37295921	37295921	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:37295921G>A	uc002rpp.1	-	8	1176	c.1080C>T	c.(1078-1080)ATC>ATT	p.I360I		NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	360							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				TAGCTCTTAGGATAAAGGAAA	0.473													26	33					0	0	1	0	0
FOXN2	3344	broad.mit.edu	37	2	48573659	48573659	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:48573659G>A	uc002rwh.1	+	3	621	c.306G>A	c.(304-306)CAG>CAA	p.Q102Q		NM_002158	NP_002149	P32314	FOXN2_HUMAN	T-cell leukemia virus enhancer factor	102					embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.0272)|LUSC - Lung squamous cell carcinoma(58;0.036)			CTTGCTACCAGAACCCAGAAA	0.433													27	43					0	0	1	0	0
ALMS1	7840	broad.mit.edu	37	2	73830401	73830401	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:73830401G>A	uc002sje.1	+	23	12446	c.12335G>A	c.(12334-12336)AGC>AAC	p.S4112N	ALMS1_uc002sjf.1_Missense_Mutation_p.S4068N|ALMS1_uc002sjh.1_Missense_Mutation_p.S3498N	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	4110					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						AAGCCTATCAGCAAGAAGGAA	0.483													26	35					0	0	1	0	0
VWA3B	200403	broad.mit.edu	37	2	98928328	98928328	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:98928328A>T	uc002syo.2	+	27	3832	c.3568A>T	c.(3568-3570)AAA>TAA	p.K1190*	VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Nonsense_Mutation_p.K847*|VWA3B_uc002syp.1_Nonsense_Mutation_p.K582*|VWA3B_uc002syq.1_Nonsense_Mutation_p.K466*|VWA3B_uc002syr.1_Nonsense_Mutation_p.K507*|VWA3B_uc002sys.2_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	1190										ovary(3)|large_intestine(2)|skin(1)	6						CTGGCCACTGAAAGAAGCGGA	0.592													7	10					0	0	1	0	0
CNGA3	1261	broad.mit.edu	37	2	98986517	98986517	+	Missense_Mutation	SNP	C	T	T	rs149069990		TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:98986517C>T	uc002syt.2	+	2	496	c.79C>T	c.(79-81)CGC>TGC	p.R27C	CNGA3_uc002syu.2_Missense_Mutation_p.R27C	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	27					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						AGATCTCAATCGCGCTGAAAA	0.502													9	27					0	0	1	0	0
TGFBRAP1	9392	broad.mit.edu	37	2	105889407	105889407	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:105889407G>A	uc002tcq.2	-	10	1961	c.1877C>T	c.(1876-1878)TCC>TTC	p.S626F	TGFBRAP1_uc010fjc.2_Missense_Mutation_p.S395F|TGFBRAP1_uc002tcr.3_Missense_Mutation_p.S626F	NM_004257	NP_004248	Q8WUH2	TGFA1_HUMAN	transforming growth factor, beta receptor	626					regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|membrane	SMAD binding|small GTPase regulator activity|transforming growth factor beta receptor binding			central_nervous_system(1)|skin(1)	2						GCCACTGGCGGAGGCCCTCTG	0.577													36	59					0	0	1	0	0
MERTK	10461	broad.mit.edu	37	2	112767556	112767556	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:112767556C>T	uc002thk.1	+	15	2114	c.1992C>T	c.(1990-1992)ATC>ATT	p.I664I	MERTK_uc002thl.1_Silent_p.I488I	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	664	Protein kinase.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						CTCAAGGCATCCCAAAGCCCA	0.428													26	44					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133539624	133539624	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:133539624T>A	uc002ttp.2	-	14	5134	c.4760A>T	c.(4759-4761)AAT>ATT	p.N1587I	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1587							protein binding				0						TGTTCTCCGATTATTTTTGCT	0.418													40	36					0	0	1	0	0
CXCR4	7852	broad.mit.edu	37	2	136872492	136872492	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:136872492C>T	uc002tuz.2	-	2	1101	c.1006G>A	c.(1006-1008)GGA>AGA	p.G336R	CXCR4_uc002tuy.2_Missense_Mutation_p.G340R|CXCR4_uc010fnk.2_Missense_Mutation_p.G321R	NM_003467	NP_003458	P61073	CXCR4_HUMAN	chemokine (C-X-C motif) receptor 4 isoform b	336	Cytoplasmic.				activation of MAPK activity|apoptosis|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|inflammatory response|initiation of viral infection|regulation of chemotaxis|response to hypoxia|response to virus	cell leading edge|cell surface|cytoplasmic membrane-bounded vesicle|integral to membrane|plasma membrane	actin binding|C-X-C chemokine receptor activity|coreceptor activity|myosin light chain binding|ubiquitin binding|ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.155)	Framycetin(DB00452)	GATGAATGTCCACCTCGCTTT	0.423													8	18					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138169277	138169277	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:138169277G>A	uc002tva.1	+	13	2701	c.2701G>A	c.(2701-2703)GGA>AGA	p.G901R	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.G791R	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CCAACCTTATGGAAACTGGTC	0.478													26	99					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141607703	141607703	+	Missense_Mutation	SNP	T	G	G			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:141607703T>G	uc002tvj.1	-	29	5879	c.4907A>C	c.(4906-4908)AAC>ACC	p.N1636T	LRP1B_uc010fnl.1_Missense_Mutation_p.N818T	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1636	Extracellular (Potential).|LDL-receptor class B 14.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CCCAGTTCCGTTAATAAAAGC	0.323										TSP Lung(27;0.18)			6	26					0	0	1	0	0
DAPL1	92196	broad.mit.edu	37	2	159672219	159672219	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:159672219C>T	uc002uaf.2	+	4	266	c.210C>T	c.(208-210)CTC>CTT	p.L70L		NM_001017920	NP_001017920	A0PJW8	DAPL1_HUMAN	death associated protein-like 1	70					apoptosis|cell differentiation						0						ACCTTTAGCTCAACTATAAAT	0.393													34	91					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167129193	167129193	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:167129193C>T	uc010fpl.2	-	17	3375	c.3034G>A	c.(3034-3036)GAG>AAG	p.E1012K	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1023						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TGTCTTATCTCCCTGGAAATC	0.328													9	13					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167145061	167145061	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:167145061C>T	uc010fpl.2	-	10	1541	c.1200G>A	c.(1198-1200)GTG>GTA	p.V400V	uc002udp.2_Intron|SCN9A_uc002udr.1_Silent_p.V271V|SCN9A_uc002uds.1_Silent_p.V271V|SCN9A_uc002udt.1_Silent_p.V271V	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	400	I.|Helical; Name=S6 of repeat I; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CCATGGCAACCACAGCCAGGA	0.413													21	46					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167149800	167149800	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:167149800C>T	uc010fpl.2	-	9	1389	c.1048G>A	c.(1048-1050)GCC>ACC	p.A350T	uc002udp.2_Intron|SCN9A_uc002udr.1_Missense_Mutation_p.A221T|SCN9A_uc002uds.1_Missense_Mutation_p.A221T|SCN9A_uc002udt.1_Missense_Mutation_p.A221T	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	350	I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	GCTAAGAAGGCCCAGCTGAAA	0.443													7	7					0	0	1	0	0
G6PC2	57818	broad.mit.edu	37	2	169763260	169763260	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:169763260C>T	uc002uem.2	+	4	619	c.527C>T	c.(526-528)CCT>CTT	p.P176L	G6PC2_uc002uen.2_Intron|G6PC2_uc010fpv.2_Missense_Mutation_p.P60L	NM_021176	NP_066999	Q9NQR9	G6PC2_HUMAN	islet-specific glucose-6-phosphatase-related	176	Helical; (Potential).				gluconeogenesis|glucose homeostasis|glucose transport|regulation of insulin secretion|transmembrane transport	endoplasmic reticulum membrane|integral to membrane	glucose-6-phosphatase activity			pancreas(1)	1						ACACATTTTCCTCATCAAGTT	0.363													15	44					0	0	1	0	0
MAP1D	254042	broad.mit.edu	37	2	172935770	172935770	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:172935770C>T	uc002uhk.2	+	6	749	c.676C>T	c.(676-678)CCC>TCC	p.P226S	MAP1D_uc010zdw.1_Missense_Mutation_p.P108S	NM_199227	NP_954697	Q6UB28	AMP1D_HUMAN	methionine aminopeptidase 1D precursor	226					N-terminal protein amino acid modification|peptidyl-methionine modification|proteolysis	mitochondrion	aminopeptidase activity|metal ion binding|metalloexopeptidase activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.216)			AGCAGGGGCTCCCTTCTCTGT	0.448													17	49					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179440845	179440845	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:179440845C>T	uc010zfg.1	-	275	62534	c.62310G>A	c.(62308-62310)CGG>CGA	p.R20770R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.R14465R|TTN_uc010zfi.1_Silent_p.R14398R|TTN_uc010zfj.1_Silent_p.R14273R|uc002umv.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21697							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAGCCATCTCCCGTTCTACGA	0.438													49	49					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179450028	179450028	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:179450028C>T	uc010zfg.1	-	258	56963	c.56739G>A	c.(56737-56739)GGG>GGA	p.G18913G	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.G12608G|TTN_uc010zfi.1_Silent_p.G12541G|TTN_uc010zfj.1_Silent_p.G12416G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19840							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGAGTTTTTTCCCAGCTTTGA	0.408													64	50					0	0	1	0	0
COL3A1	1281	broad.mit.edu	37	2	189849965	189849965	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:189849965G>A	uc002uqj.1	+	3	442	c.325G>A	c.(325-327)GGA>AGA	p.G109R		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	109					axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	AGGCCCCAAGGGAGATCCAGT	0.333													17	43					0	0	1	0	0
AOX1	316	broad.mit.edu	37	2	201499582	201499582	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:201499582G>A	uc002uvx.2	+	21	2391	c.2290G>A	c.(2290-2292)GGA>AGA	p.G764R	AOX1_uc010zhf.1_Missense_Mutation_p.G320R|AOX1_uc010fsu.2_Missense_Mutation_p.G130R	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	764					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	CGTTCCCAAGGGAGAGGATCA	0.403													26	49					0	0	1	0	0
ORC2L	4999	broad.mit.edu	37	2	201785843	201785843	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:201785843G>A	uc002uwr.2	-	14	1424	c.1167C>T	c.(1165-1167)TTC>TTT	p.F389F	ORC2L_uc010zhj.1_Silent_p.F389F	NM_006190	NP_006181	Q13416	ORC2_HUMAN	origin recognition complex, subunit 2	389					cell cycle checkpoint|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|S phase of mitotic cell cycle	nuclear origin of replication recognition complex|nucleoplasm	DNA replication origin binding|protein binding				0						GGATGAGAAGGAAGAGTTCTA	0.254													20	16					0	0	1	0	0
ERBB4	2066	broad.mit.edu	37	2	212285294	212285294	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:212285294A>T	uc002veg.1	-	25	3105	c.3007T>A	c.(3007-3009)TTC>ATC	p.F1003I	ERBB4_uc002veh.1_Missense_Mutation_p.F1003I|ERBB4_uc010zji.1_Missense_Mutation_p.F993I|ERBB4_uc010zjj.1_Missense_Mutation_p.F993I	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	1003	Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		TTCTGAAAGAACTTGCTGTCA	0.408										TSP Lung(8;0.080)			7	28					0	0	1	0	0
VWC2L	402117	broad.mit.edu	37	2	215279277	215279277	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:215279277G>A	uc002vet.2	+	2	490	c.360G>A	c.(358-360)GGG>GGA	p.G120G	VWC2L_uc010zjl.1_Silent_p.G120G	NM_001080500	NP_001073969	B2RUY7	VWC2L_HUMAN	von Willebrand factor C domain-containing	120	VWFC 2.					extracellular region					0						AATATCACGGGAAAAATTACA	0.358													12	12					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215807728	215807728	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:215807728C>T	uc002vew.2	-	50	7577	c.7357G>A	c.(7357-7359)GAA>AAA	p.E2453K	ABCA12_uc002vev.2_Missense_Mutation_p.E2135K|ABCA12_uc010zjn.1_Missense_Mutation_p.E1380K	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	2453	ABC transporter 2.				cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CAGAGAGCTTCACATTCTTCC	0.378													11	35					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215865727	215865727	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:215865727G>A	uc002vew.2	-	22	3101	c.2881C>T	c.(2881-2883)CCT>TCT	p.P961S	ABCA12_uc002vev.2_Missense_Mutation_p.P643S|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	961					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CTGTTAGAAGGAAGCTTAAAA	0.403													35	31					0	0	1	0	0
FN1	2335	broad.mit.edu	37	2	216295443	216295443	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:216295443G>A	uc002vfa.2	-	5	946	c.680C>T	c.(679-681)TCT>TTT	p.S227F	FN1_uc002vfb.2_Missense_Mutation_p.S227F|FN1_uc002vfc.2_Missense_Mutation_p.S227F|FN1_uc002vfd.2_Missense_Mutation_p.S227F|FN1_uc002vfe.2_Missense_Mutation_p.S227F|FN1_uc002vff.2_Missense_Mutation_p.S227F|FN1_uc002vfg.2_Missense_Mutation_p.S227F|FN1_uc002vfh.2_Missense_Mutation_p.S227F|FN1_uc002vfi.2_Missense_Mutation_p.S227F|FN1_uc002vfj.2_Missense_Mutation_p.S227F|FN1_uc002vfl.2_Missense_Mutation_p.S227F	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	227	Fibrin- and heparin-binding 1.|Fibronectin type-I 4.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CATACTTCTAGAAGTGCAAGT	0.438													29	26					0	0	1	0	0
OBSL1	23363	broad.mit.edu	37	2	220422584	220422584	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:220422584G>A	uc010fwk.2	-	11	3808	c.3751C>T	c.(3751-3753)CCC>TCC	p.P1251S	OBSL1_uc002vmh.1_Missense_Mutation_p.P242S|OBSL1_uc010zli.1_Missense_Mutation_p.P150S|OBSL1_uc010fwl.1_Missense_Mutation_p.P726S	NM_015311	NP_056126	O75147	OBSL1_HUMAN	obscurin-like 1	1251	Ig-like 10.				cardiac myofibril assembly	intercalated disc|M band|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity				0		Renal(207;0.0376)		Epithelial(149;2.02e-07)|all cancers(144;1.68e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00834)		GGGGCTCCGGGGGCTGCTCCA	0.662													43	32					0	0	1	0	0
AP1S3	130340	broad.mit.edu	37	2	224630016	224630016	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:224630016C>T	uc010fwx.1	-	4	495	c.343G>A	c.(343-345)GAC>AAC	p.D115N	AP1S3_uc002vnn.2_Missense_Mutation_p.D115N|AP1S3_uc010fww.2_RNA|AP1S3_uc002vno.2_RNA	NM_001039569	NP_001034658	Q96PC3	AP1S3_HUMAN	adaptor-related protein complex 1, sigma 3	115					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	coated pit|cytoplasmic vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|membrane coat	protein transporter activity				0		Renal(207;0.0112)|Lung NSC(271;0.0186)|all_lung(227;0.0272)		Epithelial(121;7.6e-10)|all cancers(144;3.62e-07)|Lung(261;0.0086)|LUSC - Lung squamous cell carcinoma(224;0.00902)		ATAAACTCGTCCAGGATGAAA	0.388													17	27					0	0	1	0	0
AGFG1	3267	broad.mit.edu	37	2	228418503	228418503	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:228418503C>T	uc002vpc.2	+	12	1871	c.1621C>T	c.(1621-1623)CCT>TCT	p.P541S	AGFG1_uc002vpd.2_Missense_Mutation_p.P563S|AGFG1_uc002vpe.2_Missense_Mutation_p.P539S|AGFG1_uc002vpf.2_Missense_Mutation_p.P501S	NM_004504	NP_004495	P52594	AGFG1_HUMAN	HIV-1 Rev binding protein isoform 2	541					cell differentiation|mRNA export from nucleus|multicellular organismal development|regulation of ARF GTPase activity|spermatogenesis	cytoplasmic membrane-bounded vesicle|Golgi apparatus|nuclear pore	ARF GTPase activator activity|DNA binding|protein binding|RNA binding|zinc ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4						ATCTAGTAATCCTTTTATGGT	0.299													22	56					0	0	1	0	0
SLC19A3	80704	broad.mit.edu	37	2	228563528	228563528	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:228563528G>A	uc002vpi.2	-	3	992	c.903C>T	c.(901-903)ATC>ATT	p.I301I	SLC19A3_uc002vpj.2_RNA|SLC19A3_uc010zlv.1_Silent_p.I297I	NM_025243	NP_079519	Q9BZV2	S19A3_HUMAN	solute carrier family 19, member 3	301	Helical; (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|reduced folate carrier activity|thiamine uptake transmembrane transporter activity			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0335)|Lung NSC(271;0.142)|all_hematologic(139;0.21)|Esophageal squamous(248;0.236)		Epithelial(121;1.58e-10)|all cancers(144;8.55e-08)|Lung(261;0.00948)|LUSC - Lung squamous cell carcinoma(224;0.0125)	L-Cysteine(DB00151)	AATCCCACAGGATTTGAACAT	0.438													48	47					0	0	1	0	0
ALPPL2	251	broad.mit.edu	37	2	233274325	233274325	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:233274325G>A	uc002vss.3	+	11	1395	c.1342G>A	c.(1342-1344)GGA>AGA	p.G448R		NM_031313	NP_112603	P10696	PPBN_HUMAN	placental-like alkaline phosphatase	448					phosphorylation	anchored to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			skin(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)	Amifostine(DB01143)|Levamisole(DB00848)	GCCCCTGGACGGAGAGACCCA	0.637													34	23					0	0	1	0	0
DGKD	8527	broad.mit.edu	37	2	234355425	234355425	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:234355425T>C	uc002vui.1	+	12	1414	c.1402T>C	c.(1402-1404)TTC>CTC	p.F468L	DGKD_uc002vuj.1_Missense_Mutation_p.F424L|DGKD_uc010fyh.1_Missense_Mutation_p.F335L|DGKD_uc010fyi.1_RNA	NM_152879	NP_690618	Q16760	DGKD_HUMAN	diacylglycerol kinase, delta 130kDa isoform 2	468					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell growth|diacylglycerol metabolic process|endocytosis|epidermal growth factor receptor signaling pathway|multicellular organismal development|platelet activation|protein homooligomerization|protein transport|response to organic substance|second-messenger-mediated signaling	cytoplasm|cytoplasmic membrane-bounded vesicle|plasma membrane|plasma membrane	ATP binding|diacylglycerol binding|diacylglycerol kinase activity|metal ion binding|protein heterodimerization activity|protein homodimerization activity			central_nervous_system(2)|pancreas(1)|lung(1)|skin(1)	5		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0538)		Epithelial(121;1.31e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000416)|Lung(119;0.00285)|LUSC - Lung squamous cell carcinoma(224;0.00655)	Phosphatidylserine(DB00144)	CACCGAAGACTTCAGCGAGGA	0.587													55	49					0	0	1	0	0
USP40	55230	broad.mit.edu	37	2	234405412	234405412	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr2:234405412G>A	uc010zmr.1	-	23	2815	c.2815C>T	c.(2815-2817)CCT>TCT	p.P939S	USP40_uc010zms.1_Missense_Mutation_p.P37S|USP40_uc002vun.2_Missense_Mutation_p.P103S|USP40_uc002vuo.1_Missense_Mutation_p.P103S	NM_018218	NP_060688	Q9NVE5	UBP40_HUMAN	ubiquitin thioesterase 40	927					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(1)|lung(1)|breast(1)	3		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0539)		Epithelial(121;1.71e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000407)|Lung(119;0.00277)|LUSC - Lung squamous cell carcinoma(224;0.00646)		ACCAGAGGAGGAAGTTGTCCT	0.348													13	12					0	0	1	0	0
PDYN	5173	broad.mit.edu	37	20	1961235	1961235	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr20:1961235C>T	uc010gaj.2	-	3	741	c.499G>A	c.(499-501)GAC>AAC	p.D167N	uc002wfu.1_Intron|PDYN_uc002wfv.2_Missense_Mutation_p.D167N|PDYN_uc010zpt.1_Missense_Mutation_p.D12N	NM_024411	NP_077722	P01213	PDYN_HUMAN	beta-neoendorphin-dynorphin preproprotein	167					cell death|neuropeptide signaling pathway|synaptic transmission	extracellular region|plasma membrane	opioid peptide activity			upper_aerodigestive_tract(1)|ovary(1)	2						TCCTTGGGGTCCTCCTCAGCG	0.597													47	79					0	0	1	0	0
CDC25B	994	broad.mit.edu	37	20	3782981	3782981	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr20:3782981C>T	uc002wjn.2	+	11	1930	c.1152C>T	c.(1150-1152)CTC>CTT	p.L384L	CDC25B_uc010zqk.1_Silent_p.L320L|CDC25B_uc010zql.1_Silent_p.L306L|CDC25B_uc010zqm.1_Silent_p.L293L|CDC25B_uc002wjl.2_Silent_p.L272L|CDC25B_uc002wjm.2_Silent_p.L272L|CDC25B_uc002wjo.2_Silent_p.L370L|CDC25B_uc002wjp.2_Silent_p.L343L|CDC25B_uc002wjq.2_Silent_p.L184L|CDC25B_uc010gbc.2_5'Flank	NM_021873	NP_068659	P30305	MPIP2_HUMAN	cell division cycle 25B isoform 1	384					cell division|G2/M transition of mitotic cell cycle|mitosis|positive regulation of cell proliferation	cytosol|microtubule organizing center|nucleoplasm	protein binding|protein tyrosine phosphatase activity			lung(3)|ovary(2)	5						TCGAGAACCTCCTGGACAGTG	0.577													24	52					0	0	1	0	0
PROKR2	128674	broad.mit.edu	37	20	5294791	5294791	+	Silent	SNP	G	A	A	rs139296723		TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr20:5294791G>A	uc010zqw.1	-	1	225	c.225C>T	c.(223-225)ATC>ATT	p.I75I	PROKR2_uc010zqx.1_Silent_p.I75I|PROKR2_uc010zqy.1_Silent_p.I75I|uc002wly.1_5'Flank	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	75	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						TGAGGGCAGCGATAAAGACAA	0.552										HNSCC(71;0.22)			40	82					0	0	1	0	0
CBFA2T2	9139	broad.mit.edu	37	20	32194798	32194798	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr20:32194798C>T	uc002wzg.1	+	3	635	c.98C>T	c.(97-99)TCG>TTG	p.S33L	CBFA2T2_uc010zug.1_Intron|CBFA2T2_uc002wze.1_Missense_Mutation_p.S24L|CBFA2T2_uc002wzf.1_RNA|CBFA2T2_uc002wzh.1_Missense_Mutation_p.S4L|CBFA2T2_uc002wzi.1_RNA|CBFA2T2_uc002wzj.1_RNA	NM_005093	NP_005084	O43439	MTG8R_HUMAN	core-binding factor, runt domain, alpha subunit	33	Pro-rich.					nucleus	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)|skin(1)	2						ATGCCTGGATCGCCTGTGGAA	0.502													34	58					0	0	1	0	0
AHCY	191	broad.mit.edu	37	20	32878609	32878609	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr20:32878609G>A	uc002xai.2	-	6	833	c.694C>T	c.(694-696)CTG>TTG	p.L232L	AHCY_uc002xaj.2_Silent_p.L204L	NM_000687	NP_000678	P23526	SAHH_HUMAN	adenosylhomocysteinase isoform 1	232					methylation|xenobiotic metabolic process	cytosol|melanosome	adenosylhomocysteinase activity|protein binding				0						AAACCCCGCAGGGCCTGGGCA	0.602													45	70					0	0	1	0	0
TGM2	7052	broad.mit.edu	37	20	36766675	36766675	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr20:36766675C>T	uc002xhr.2	-	10	1555	c.1455G>A	c.(1453-1455)ATG>ATA	p.M485I	TGM2_uc010zvx.1_Missense_Mutation_p.M404I|TGM2_uc010zvy.1_Missense_Mutation_p.M425I|TGM2_uc002xhs.1_Missense_Mutation_p.M461I|TGM2_uc002xht.2_Missense_Mutation_p.M485I	NM_004613	NP_004604	P21980	TGM2_HUMAN	transglutaminase 2 isoform a	485					apoptotic cell clearance|peptide cross-linking|positive regulation of cell adhesion		acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(1)|lung(1)|ovary(1)	3		Myeloproliferative disorder(115;0.00878)			L-Glutamine(DB00130)	AGTCACTGCCCATGTTCATGC	0.592													14	26					0	0	1	0	0
GDAP1L1	78997	broad.mit.edu	37	20	42907841	42907841	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr20:42907841G>A	uc002xlq.2	+	6	1072	c.1005G>A	c.(1003-1005)AAG>AAA	p.K335K	GDAP1L1_uc010zwl.1_Silent_p.K354K|GDAP1L1_uc010zwm.1_Silent_p.K277K|GDAP1L1_uc010zwn.1_Silent_p.K143K	NM_024034	NP_076939	Q96MZ0	GD1L1_HUMAN	ganglioside-induced differentiation-associated	335	GST C-terminal.									large_intestine(1)	1		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			GGCTGGTCAAGAGGAAACCCC	0.567													60	84					0	0	1	0	0
TOMM34	10953	broad.mit.edu	37	20	43580559	43580559	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr20:43580559C>T	uc002xmy.2	-	4	605	c.465G>A	c.(463-465)CAG>CAA	p.Q155Q	PABPC1L_uc002xmx.2_Intron|TOMM34_uc002xmz.2_RNA	NM_006809	NP_006800	Q15785	TOM34_HUMAN	translocase of outer mitochondrial membrane 34	155					protein targeting to mitochondrion	integral to membrane|mitochondrial outer membrane	heat shock protein binding|signal sequence binding				0		Myeloproliferative disorder(115;0.0122)				TCCACCTCTTCTGAGCTGAAA	0.517													34	64					0	0	1	0	0
NCOA3	8202	broad.mit.edu	37	20	46266468	46266468	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr20:46266468C>T	uc002xtk.2	+	13	2658	c.2453C>T	c.(2452-2454)TCC>TTC	p.S818F	NCOA3_uc010ght.1_Missense_Mutation_p.S828F|NCOA3_uc002xtl.2_Missense_Mutation_p.S818F|NCOA3_uc002xtm.2_Missense_Mutation_p.S818F|NCOA3_uc002xtn.2_Missense_Mutation_p.S818F|NCOA3_uc010zyc.1_Missense_Mutation_p.S613F	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	818					androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						AATTCCATATCCTCAAATGGT	0.343													26	25					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870822	51870822	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr20:51870822G>A	uc002xwo.2	+	2	1781	c.825G>A	c.(823-825)CTG>CTA	p.L275L		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	275	C2H2-type 2.				multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			AAAAGGTTCTGAAATGTATGT	0.438													21	22					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871330	51871330	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr20:51871330C>T	uc002xwo.2	+	2	2289	c.1333C>T	c.(1333-1335)CCA>TCA	p.P445S		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	445					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			GGCTCCCAAGCCATCCAGTAA	0.468													48	82					0	0	1	0	0
TFAP2C	7022	broad.mit.edu	37	20	55211758	55211758	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr20:55211758C>T	uc002xya.2	+	6	1258	c.1015C>T	c.(1015-1017)CTT>TTT	p.L339F	TFAP2C_uc010zzi.1_Missense_Mutation_p.L170F	NM_003222	NP_003213	Q92754	AP2C_HUMAN	transcription factor AP-2 gamma	339	H-S-H (helix-span-helix), dimerization.				cell-cell signaling|male gonad development|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1			Colorectal(105;0.229)			CAGACCTCATCTTGGAGGACG	0.433													19	41					0	0	1	0	0
GNAS	2778	broad.mit.edu	37	20	57428975	57428975	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr20:57428975C>T	uc002xzw.2	+	1	940	c.655C>T	c.(655-657)CCC>TCC	p.P219S	GNAS_uc002xzt.2_Intron|GNAS_uc002xzu.3_Intron|GNAS_uc010gjq.2_Intron|GNAS_uc002xzv.2_RNA	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			CTACAGCCCTCCCCCTGAGGA	0.647			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			5	13					0	0	1	0	0
KRTAP27-1	643812	broad.mit.edu	37	21	31709534	31709534	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr21:31709534G>A	uc002ynx.1	-	1	479	c.453C>T	c.(451-453)TTC>TTT	p.F151F		NM_001077711	NP_001071179	Q3LI81	KR271_HUMAN	keratin associated protein 27-1	151						intermediate filament		p.F151S(1)		ovary(2)	2						CCAGAGTTTCGAAATTTTTAG	0.493													64	98					0	0	1	0	0
GCFC1	94104	broad.mit.edu	37	21	34134610	34134610	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr21:34134610G>A	uc002yqn.2	-	4	858	c.668C>T	c.(667-669)GCT>GTT	p.A223V	GCFC1_uc002yqo.2_RNA|GCFC1_uc002yqp.2_Missense_Mutation_p.A223V|GCFC1_uc002yqr.2_Missense_Mutation_p.A223V	NM_016631	NP_057715	Q9Y5B6	GCFC1_HUMAN	GC-rich sequence DNA-binding factor candidate	223						cytosol|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2						ATGTATAAAAGCTGCATCTGG	0.393													13	13					0	0	1	0	0
FAM3B	54097	broad.mit.edu	37	21	42694977	42694977	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr21:42694977G>A	uc002yzb.1	+	2	293	c.147G>A	c.(145-147)GAG>GAA	p.E49E	FAM3B_uc002yza.2_RNA|FAM3B_uc002yzc.1_Intron|FAM3B_uc002yzd.1_Silent_p.E72E|FAM3B_uc011aeq.1_Silent_p.E63E	NM_058186	NP_478066	P58499	FAM3B_HUMAN	family with sequence similarity 3, member B	49					apoptosis|insulin secretion	extracellular space	cytokine activity				0		Prostate(19;1.57e-07)|all_epithelial(19;0.0404)				GCATCGGGGAGAGGCCTGTCC	0.612													26	57					0	0	1	0	0
SIK1	150094	broad.mit.edu	37	21	44837467	44837467	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr21:44837467G>A	uc002zdf.2	-	13	2059	c.1932C>T	c.(1930-1932)AGC>AGT	p.S644S		NM_173354	NP_775490	P57059	SIK1_HUMAN	salt-inducible kinase 1	644					anoikis|cell cycle|cell differentiation|intracellular protein kinase cascade|multicellular organismal development|regulation of cell differentiation|regulation of mitotic cell cycle	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(2)|testis(2)|ovary(1)|central_nervous_system(1)|skin(1)	7						AGCCCTCCCGGCTGCCGGCTG	0.751													6	11					0	0	1	0	0
COL18A1	80781	broad.mit.edu	37	21	46912627	46912627	+	Silent	SNP	C	T	T	rs143339443	by1000genomes	TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr21:46912627C>T	uc011afs.1	+	23	3480	c.3459C>T	c.(3457-3459)CCC>CCT	p.P1153P	COL18A1_uc002zhg.2_Silent_p.P738P|COL18A1_uc002zhi.2_Silent_p.P918P	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	1153	Triple-helical region 5 (COL5).				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		CAGGCTTTCCCGTGAGTAACC	0.692													33	66					0	0	1	0	0
MICALL1	85377	broad.mit.edu	37	22	38318096	38318096	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr22:38318096C>T	uc003aui.2	+	6	771	c.687C>T	c.(685-687)ACC>ACT	p.T229T		NM_033386	NP_203744	Q8N3F8	MILK1_HUMAN	molecule interacting with Rab13	229						cytoplasm|cytoskeleton	protein binding|zinc ion binding			breast(1)	1	Melanoma(58;0.045)					GGTCGGGGACCAGGCCTGGGC	0.647													23	51					0	0	1	0	0
SULT4A1	25830	broad.mit.edu	37	22	44235875	44235875	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr22:44235875G>A	uc003bee.1	-	3	447	c.331C>T	c.(331-333)CAC>TAC	p.H111Y	SULT4A1_uc003bed.1_Missense_Mutation_p.H32Y|SULT4A1_uc003bef.1_RNA|SULT4A1_uc011aqb.1_Intron	NM_014351	NP_055166	Q9BR01	ST4A1_HUMAN	sulfotransferase family 4A, member 1	111					3'-phosphoadenosine 5'-phosphosulfate metabolic process|steroid metabolic process|xenobiotic metabolic process	cytosol	sulfotransferase activity				0		Ovarian(80;0.024)|all_neural(38;0.0416)		Colorectal(1;0.00242)|READ - Rectum adenocarcinoma(1;0.0419)		TAGGGCAGGTGGCTCTTGATG	0.433													4	11					0	0	1	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50678773	50678773	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr22:50678773C>T	uc003bkb.1	-	2	1277	c.765G>A	c.(763-765)TGG>TGA	p.W255*	TUBGCP6_uc010har.1_Nonsense_Mutation_p.W255*|TUBGCP6_uc010has.1_RNA|TUBGCP6_uc010hau.1_Nonsense_Mutation_p.W255*	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	255					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		CTTCGTCTTCCCACTGATCCA	0.562													16	26					0	0	1	0	0
CHL1	10752	broad.mit.edu	37	3	369909	369909	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:369909C>T	uc003bou.2	+	5	528	c.257C>T	c.(256-258)TCG>TTG	p.S86L	CHL1_uc003bot.2_Missense_Mutation_p.S86L|CHL1_uc003bow.1_Missense_Mutation_p.S86L|CHL1_uc011asi.1_Missense_Mutation_p.S86L	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	86	Ig-like C2-type 1.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		ATAATTCCATCGAACAATTCA	0.383													27	45					0	0	1	0	0
CHL1	10752	broad.mit.edu	37	3	405007	405007	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:405007C>T	uc003bou.2	+	13	1749	c.1478C>T	c.(1477-1479)TCA>TTA	p.S493L	CHL1_uc003bot.2_Missense_Mutation_p.S509L|CHL1_uc003bow.1_Missense_Mutation_p.S493L|CHL1_uc011asi.1_Missense_Mutation_p.S509L	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	493	Ig-like C2-type 5.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		GGGTCTTACTCATGTTGGGTA	0.408													18	29					0	0	1	0	0
CHL1	10752	broad.mit.edu	37	3	407674	407674	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:407674C>T	uc003bou.2	+	14	1850	c.1579C>T	c.(1579-1581)CCC>TCC	p.P527S	CHL1_uc003bot.2_Missense_Mutation_p.P543S|CHL1_uc003bow.1_Missense_Mutation_p.P527S|CHL1_uc011asi.1_Missense_Mutation_p.P543S|uc003box.1_Intron	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	527	Ig-like C2-type 6.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		TCCTCGTATCCCCAAATTGCA	0.343													7	28					0	0	1	0	0
GRM7	2917	broad.mit.edu	37	3	7348293	7348293	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:7348293C>T	uc003bqm.2	+	4	1261	c.987C>T	c.(985-987)ATC>ATT	p.I329I	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.I329I|GRM7_uc003bql.2_Silent_p.I329I|GRM7_uc003bqn.1_5'UTR	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	329	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	ATGAAGATATCGCAGAAGGGG	0.517													23	47					0	0	1	0	0
CPNE9	151835	broad.mit.edu	37	3	9771274	9771274	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:9771274G>A	uc003bsd.2	+	20	1731	c.1560G>A	c.(1558-1560)GAG>GAA	p.E520E	BRPF1_uc003bse.2_5'Flank|BRPF1_uc003bsf.2_5'Flank|BRPF1_uc003bsg.2_5'Flank|BRPF1_uc011ati.1_5'Flank	NM_153635	NP_705899	Q8IYJ1	CPNE9_HUMAN	copine-like protein	520										ovary(2)	2	Medulloblastoma(99;0.227)					TGCTGGCCGAGATCCCGGAGC	0.642													34	52					0	0	1	0	0
NUP210	23225	broad.mit.edu	37	3	13379373	13379373	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:13379373G>A	uc003bxv.1	-	26	3599	c.3516C>T	c.(3514-3516)ATC>ATT	p.I1172I		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1172	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					TGGGGGCGCGGATCCTCACGG	0.642													14	20					0	0	1	0	0
EOMES	8320	broad.mit.edu	37	3	27758960	27758960	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:27758960G>A	uc003cdx.2	-	6	1662	c.1662C>T	c.(1660-1662)CCC>CCT	p.P554P	EOMES_uc003cdy.3_Silent_p.P573P|EOMES_uc010hfn.2_3'UTR|EOMES_uc011axc.1_Silent_p.P278P	NM_005442	NP_005433	O95936	EOMES_HUMAN	eomesodermin	554					CD8-positive, alpha-beta T cell differentiation involved in immune response|cell differentiation involved in embryonic placenta development|endoderm formation|mesoderm formation|mesodermal to mesenchymal transition involved in gastrulation|positive regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|breast(1)	4						ATGTCTGAAGGGGCAAGGATT	0.512													34	47					0	0	1	0	0
TRIM71	131405	broad.mit.edu	37	3	32933053	32933053	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:32933053C>T	uc003cff.2	+	4	2420	c.2357C>T	c.(2356-2358)TCG>TTG	p.S786L		NM_001039111	NP_001034200	Q2Q1W2	LIN41_HUMAN	tripartite motif-containing 71	786	NHL 5.				multicellular organismal development	cytoplasm	zinc ion binding			ovary(2)|large_intestine(1)	3						TTTCTGGGCTCGGAGGGCACA	0.607													33	60					0	0	1	0	0
GLB1	2720	broad.mit.edu	37	3	33110330	33110330	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:33110330G>A	uc003cfi.1	-	3	495	c.378C>T	c.(376-378)ATC>ATT	p.I126I	GLB1_uc003cfh.1_Silent_p.I96I|GLB1_uc003cfj.1_Intron|GLB1_uc011axk.1_Silent_p.I174I	NM_000404	NP_000395	P16278	BGAL_HUMAN	galactosidase, beta 1 isoform a preproprotein	126					carbohydrate metabolic process	lysosome|perinuclear region of cytoplasm	beta-galactosidase activity|cation binding|protein binding			large_intestine(1)	1		Melanoma(143;0.104)				ACTCTGCACAGATGTAGGGCC	0.547													23	49					0	0	1	0	0
DLEC1	9940	broad.mit.edu	37	3	38136475	38136476	+	Missense_Mutation	DNP	GG	AA	AA	rs34290809	by1000genomes	TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:38136475_38136476GG>AA	uc003cho.1	+	13	2046_2047	c.2025_2026GG>AA	c.(2023-2028)AAGGAG>AAAAAG	p.E676K	DLEC1_uc003chp.1_Missense_Mutation_p.E676K|DLEC1_uc010hgv.1_Missense_Mutation_p.E676K|DLEC1_uc003chr.1_5'UTR|DLEC1_uc010hgx.1_5'Flank|DLEC1_uc003chq.1_Intron	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	676					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		ACCCCGACAAGGAGACTGCCTT	0.55													30	41					0	0	1	0	0
CACNA1D	776	broad.mit.edu	37	3	53700370	53700370	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:53700370C>T	uc003dgv.3	+	7	1087	c.924C>T	c.(922-924)ATC>ATT	p.I308I	CACNA1D_uc003dgu.3_Silent_p.I308I|CACNA1D_uc003dgy.3_Silent_p.I308I|CACNA1D_uc003dgw.3_5'UTR	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	308	Extracellular (Potential).|I.				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	TTGCAGATATCGTAGCTGAAG	0.567													66	119					0	0	1	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54871252	54871252	+	Missense_Mutation	SNP	G	A	A	rs41277453		TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:54871252G>A	uc003dhf.2	+	15	1513	c.1465G>A	c.(1465-1467)GAA>AAA	p.E489K	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.E395K|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Missense_Mutation_p.E223K	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	489	Extracellular (Potential).|Cache.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TAAGCAGAACGAAACCGTGAG	0.517													33	94					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58108948	58108948	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:58108948C>T	uc003djj.2	+	21	3420	c.3255C>T	c.(3253-3255)ATC>ATT	p.I1085I	FLNB_uc010hne.2_Silent_p.I1085I|FLNB_uc003djk.2_Silent_p.I1085I|FLNB_uc010hnf.2_Silent_p.I1085I|FLNB_uc003djl.2_Silent_p.I916I|FLNB_uc003djm.2_Silent_p.I916I	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1085	Filamin 9.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		AGGCCAAAATCGAGTGCTCCG	0.552													48	96					0	0	1	0	0
ROBO2	6092	broad.mit.edu	37	3	77657038	77657038	+	Missense_Mutation	SNP	C	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:77657038C>A	uc003dpy.3	+	21	3869	c.3226C>A	c.(3226-3228)CCC>ACC	p.P1076T	ROBO2_uc003dpz.2_Missense_Mutation_p.P1080T|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.P1080T|ROBO2_uc003dqa.2_Missense_Mutation_p.P203T	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	1076	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		CCCTCTACCTCCCCCCCCAGT	0.433													14	33					9.31168e-06	9.4287e-06	1	1	0
EPHA6	285220	broad.mit.edu	37	3	97251253	97251253	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:97251253A>G	uc010how.1	+	11	2295	c.2252A>G	c.(2251-2253)GAG>GGG	p.E751G	EPHA6_uc011bgo.1_RNA|EPHA6_uc011bgp.1_Missense_Mutation_p.E117G|EPHA6_uc003drs.3_Missense_Mutation_p.E143G|EPHA6_uc003drr.3_Missense_Mutation_p.E143G|EPHA6_uc003drt.2_Missense_Mutation_p.E143G|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	656	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						GGGAAAAGAGAGATCCCAGTT	0.403													13	33					0	0	1	0	0
TMEM45A	55076	broad.mit.edu	37	3	100295833	100295833	+	Silent	SNP	C	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:100295833C>A	uc003dtz.1	+	6	1112	c.799C>A	c.(799-801)CGA>AGA	p.R267R	TMEM45A_uc003dua.1_Silent_p.R283R|TMEM45A_uc003dub.1_RNA	NM_018004	NP_060474	Q9NWC5	TM45A_HUMAN	transmembrane protein 45A	267						integral to membrane				skin(2)|ovary(1)	3						AAATGCTGAACGAGAACAAGA	0.368													14	23					8.60227e-14	8.80523e-14	1	1	0
MYH15	22989	broad.mit.edu	37	3	108211420	108211420	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:108211420C>T	uc003dxa.1	-	10	915	c.858G>A	c.(856-858)GTG>GTA	p.V286V		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	286	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						GCTGGAAAATCACCCTGGACT	0.358													7	12					0	0	1	0	0
PHLDB2	90102	broad.mit.edu	37	3	111667778	111667778	+	Splice_Site	SNP	G	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:111667778G>T	uc010hqa.2	+	10	2899	c.2488_splice	c.e10-1	p.G830_splice	PHLDB2_uc003dyc.2_Splice_Site_p.G814_splice|PHLDB2_uc003dyd.2_Splice_Site_p.G787_splice|PHLDB2_uc003dyg.2_Splice_Site_p.G830_splice|PHLDB2_uc003dyh.2_Splice_Site_p.G787_splice|PHLDB2_uc003dyi.2_Intron	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,							cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						CCTCCTTTTAGGGCTATATCA	0.438													19	53					5.03518e-11	5.14464e-11	1	1	0
CASR	846	broad.mit.edu	37	3	122001062	122001062	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:122001062G>A	uc003eev.3	+	6	2083	c.1711G>A	c.(1711-1713)GGG>AGG	p.G571R	CASR_uc003eew.3_Missense_Mutation_p.G581R	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	571	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GTGTCCTGATGGGGAGTATAG	0.602													38	58					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	123983355	123983355	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:123983355T>A	uc003ehg.2	+	4	395	c.268T>A	c.(268-270)TGC>AGC	p.C90S	KALRN_uc010hrv.1_Missense_Mutation_p.C90S|KALRN_uc003ehf.1_Missense_Mutation_p.C90S|KALRN_uc011bjy.1_Missense_Mutation_p.C90S	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	90	CRAL-TRIO.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						TGAGGACGTGTGCAAACGTGG	0.557													14	25					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124390568	124390568	+	Silent	SNP	A	G	G			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:124390568A>G	uc003ehg.2	+	48	6889	c.6762A>G	c.(6760-6762)CAA>CAG	p.Q2254Q	KALRN_uc003ehi.2_Silent_p.Q595Q|KALRN_uc003ehk.2_Silent_p.Q557Q|KALRN_uc011bjz.1_Silent_p.Q346Q	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2253					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						TGAGGTCTCAACCTGCCAGGC	0.567													35	76					0	0	1	0	0
KIAA1257	57501	broad.mit.edu	37	3	128712114	128712114	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:128712114G>A	uc003elj.3	-	2	230	c.34C>T	c.(34-36)CCC>TCC	p.P12S	KIAA1257_uc003elg.1_Missense_Mutation_p.P12S|KIAA1257_uc003eli.3_5'Flank	NM_020741	NP_065792	Q9ULG3	K1257_HUMAN	hypothetical protein LOC57501	12											0						ATGCTTGCGGGGTCCTCTTCC	0.627													13	20					0	0	1	0	0
PRR23B	389151	broad.mit.edu	37	3	138738751	138738751	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:138738751C>T	uc003esy.1	-	1	1018	c.753G>A	c.(751-753)CCG>CCA	p.P251P		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	251	Pro-rich.									breast(1)	1						GAGGGCGTTCCGGGAGCGGCG	0.667													21	32					0	0	1	0	0
KLHL6	89857	broad.mit.edu	37	3	183273410	183273410	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:183273410G>A	uc003flr.2	-	1	90	c.32C>T	c.(31-33)ACC>ATC	p.T11I	KLHL6_uc003fls.1_RNA|KLHL6_uc003flt.1_Missense_Mutation_p.T9I	NM_130446	NP_569713	Q8WZ60	KLHL6_HUMAN	kelch-like 6	11				T -> R (in Ref. 5; AAL35594).						haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(143;9.2e-12)|Ovarian(172;0.0172)		all cancers(12;1.29e-44)|Epithelial(37;1.24e-38)|LUSC - Lung squamous cell carcinoma(7;2.58e-24)|Lung(8;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.32e-22)			ATCACCCATGGTCCAGGCGCC	0.572													52	65					0	0	1	0	0
ATP13A5	344905	broad.mit.edu	37	3	193039583	193039583	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:193039583G>A	uc011bsq.1	-	16	1802	c.1802C>T	c.(1801-1803)TCC>TTC	p.S601F		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	601					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		CAGGCTCGAGGAAAATGGAAA	0.502													22	22					0	0	1	0	0
ATP13A5	344905	broad.mit.edu	37	3	193049097	193049097	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:193049097G>A	uc011bsq.1	-	12	1276	c.1276C>T	c.(1276-1278)CCT>TCT	p.P426S		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	426					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		TCTTTTGGAGGAACCTGGGAG	0.537													17	24					0	0	1	0	0
MUC4	4585	broad.mit.edu	37	3	195505203	195505203	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:195505203G>A	uc011bto.1	-	4	12990	c.12530C>T	c.(12529-12531)GCT>GTT	p.A4177V	MUC4_uc003fva.2_5'UTR|MUC4_uc003fvb.2_5'UTR|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_5'UTR|MUC4_uc010hzr.2_RNA|MUC4_uc011btf.1_5'UTR|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_5'UTR|MUC4_uc011bti.1_5'UTR|MUC4_uc011btj.1_Missense_Mutation_p.A46V|MUC4_uc011btk.1_5'UTR|MUC4_uc011btl.1_5'UTR|MUC4_uc011btm.1_Missense_Mutation_p.A46V|MUC4_uc011btn.1_5'UTR|MUC4_uc003fvo.2_Missense_Mutation_p.A69V|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Missense_Mutation_p.A917V	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1062					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GATGGGGGCAGCTGTGGAGCG	0.597													31	42					0	0	1	0	0
SDHAP1	255812	broad.mit.edu	37	3	195701304	195701304	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:195701304C>T	uc011btq.1	-	8	1189	c.560G>A	c.(559-561)GGC>GAC	p.G187D	SDHAP1_uc003fvx.3_RNA|SDHAP1_uc011btp.1_RNA					SubName: Full=cDNA FLJ56858, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						AGGGCACATGCCTGACCAGAC	0.572													5	45					0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3189513	3189513	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:3189513A>G	uc011bvq.1	+	40	5276	c.5131A>G	c.(5131-5133)ACA>GCA	p.T1711A		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1709					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		AATCTCCTGTACAGTAATTAA	0.383													30	37					0	0	1	0	0
HGFAC	3083	broad.mit.edu	37	4	3451098	3451098	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:3451098G>A	uc003ghc.2	+	14	1923	c.1920G>A	c.(1918-1920)TGG>TGA	p.W640*	HGFAC_uc010icw.2_Nonsense_Mutation_p.W647*	NM_001528	NP_001519	Q04756	HGFA_HUMAN	HGF activator preproprotein	640	Peptidase S1.				proteolysis	extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(2)	2				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		ATGTGGACTGGATCAACGACC	0.642													22	48					0	0	1	0	0
C1QTNF7	114905	broad.mit.edu	37	4	15444183	15444183	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:15444183G>A	uc011bxb.1	+	3	857	c.630G>A	c.(628-630)CTG>CTA	p.L210L	C1QTNF7_uc003gno.2_Silent_p.L217L|C1QTNF7_uc003gnp.2_Silent_p.L210L	NM_001135171	NP_001128643	Q9BXJ2	C1QT7_HUMAN	C1q and tumor necrosis factor related protein 7	210	C1q.					collagen					0						CAATCGGACTGGTACACAATG	0.473													38	95					0	0	1	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23830128	23830128	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:23830128C>T	uc003gqs.2	-	5	772	c.652G>A	c.(652-654)GAT>AAT	p.D218N	PPARGC1A_uc003gqt.2_RNA|PPARGC1A_uc011bxp.1_RNA|PPARGC1A_uc010ier.1_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	218					androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				GGAGGGTCATCGTTTGTGGTC	0.468													33	82					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36230271	36230271	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:36230271G>A	uc003gsq.1	-	2	1176	c.838C>T	c.(838-840)CGA>TGA	p.R280*	ARAP2_uc003gsr.1_Nonsense_Mutation_p.R280*	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	280					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						AGAAAAGATCGAGATGGTCTT	0.393													25	46					0	0	1	0	0
KLB	152831	broad.mit.edu	37	4	39439544	39439544	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:39439544G>A	uc003gua.2	+	3	1631	c.1534G>A	c.(1534-1536)GAG>AAG	p.E512K	KLB_uc011byj.1_Missense_Mutation_p.E512K	NM_175737	NP_783864	Q86Z14	KLOTB_HUMAN	klotho beta	512	Extracellular (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	cation binding|fibroblast growth factor binding|hydrolase activity, hydrolyzing O-glycosyl compounds			skin(1)	1						TTCTTTAAAAGAGTCCACGCC	0.398													10	33					0	0	1	0	0
GRXCR1	389207	broad.mit.edu	37	4	42895325	42895325	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:42895325G>A	uc003gwt.2	+	1	42	c.42G>A	c.(40-42)CGG>CGA	p.R14R		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	14					cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						ACAGGCCACGGAAAGTCCGGT	0.512													28	53					0	0	1	0	0
CLOCK	9575	broad.mit.edu	37	4	56304625	56304625	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:56304625T>C	uc003haz.1	-	23	3111	c.2185A>G	c.(2185-2187)ATG>GTG	p.M729V	CLOCK_uc003hba.1_Missense_Mutation_p.M729V|CLOCK_uc010igu.1_Intron	NM_004898	NP_004889	O15516	CLOCK_HUMAN	clock	729					circadian rhythm|photoperiodism|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|transcription factor complex	DNA binding|histone acetyltransferase activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(11;0.00335)|Glioma(25;0.08)|all_epithelial(27;0.0992)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(4;1.62e-07)|Lung(4;1.34e-06)|Epithelial(7;0.0107)			CCCATAAGCATAGTACTAGGT	0.313													21	29					0	0	1	0	0
KIAA1211	57482	broad.mit.edu	37	4	57182456	57182456	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:57182456C>T	uc003hbk.2	+	8	3179	c.2788C>T	c.(2788-2790)CCT>TCT	p.P930S	KIAA1211_uc010iha.2_Missense_Mutation_p.P923S|KIAA1211_uc011bzz.1_Missense_Mutation_p.P840S|KIAA1211_uc003hbm.1_Missense_Mutation_p.P816S	NM_020722	NP_065773	Q6ZU35	K1211_HUMAN	hypothetical protein LOC57482	930	Pro-rich.									ovary(1)|skin(1)	2	Glioma(25;0.08)|all_neural(26;0.101)					CCGCTCTGTTCCTGTGGCCCA	0.652													28	33					0	0	1	0	0
UGT2B4	7363	broad.mit.edu	37	4	70346524	70346524	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:70346524C>T	uc003hek.3	-	6	1462	c.1415G>A	c.(1414-1416)GGA>GAA	p.G472E	UGT2B4_uc011cap.1_Missense_Mutation_p.G336E|UGT2B4_uc003hel.3_3'UTR	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	472					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						GTGCTTGGCTCCTTTATGGCG	0.483													66	125					0	0	1	0	0
BTC	685	broad.mit.edu	37	4	75673342	75673342	+	Missense_Mutation	SNP	C	T	T	rs140634211	byFrequency	TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:75673342C>T	uc003hig.2	-	5	793	c.446G>A	c.(445-447)CGT>CAT	p.R149H		NM_001729	NP_001720	P35070	BTC_HUMAN	betacellulin precursor	149	Cytoplasmic (Potential).|Arg/Lys-rich (basic).				positive regulation of cell division|positive regulation of cell proliferation	extracellular space|integral to membrane|plasma membrane|soluble fraction	epidermal growth factor receptor binding|growth factor activity			central_nervous_system(1)|skin(1)	2			Lung(101;0.219)			CTTTCTTTTACGACGTTTCCG	0.353													6	19					0	0	1	0	0
SHROOM3	57619	broad.mit.edu	37	4	77678003	77678003	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:77678003C>T	uc011cbx.1	+	8	6064	c.5111C>T	c.(5110-5112)CCC>CTC	p.P1704L	SHROOM3_uc003hkg.2_Missense_Mutation_p.P1482L	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	1704	ASD2.				apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			GGTTTGTTTCCCCGAGATGTG	0.468													25	54					0	0	1	0	0
ANKRD56	345079	broad.mit.edu	37	4	77816665	77816665	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:77816665C>T	uc003hki.2	-	1	2338	c.2338G>A	c.(2338-2340)GAG>AAG	p.E780K		NM_001029870	NP_001025041	A6NEL2	ANR56_HUMAN	ankyrin repeat domain 56	780											0						TGGAATTTCTCATACTGGTTG	0.488													39	73					0	0	1	0	0
BMP3	651	broad.mit.edu	37	4	81967744	81967744	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:81967744C>T	uc003hmg.3	+	2	1489	c.1169C>T	c.(1168-1170)TCC>TTC	p.S390F		NM_001201	NP_001192	P12645	BMP3_HUMAN	bone morphogenetic protein 3 preproprotein	390					cartilage development|cell differentiation|cell-cell signaling|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(4)|central_nervous_system(1)	5						TGGATTATCTCCCCCAAGTCC	0.463													50	82					0	0	1	0	0
CDS1	1040	broad.mit.edu	37	4	85538796	85538796	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:85538796G>A	uc011ccv.1	+	4	920	c.422G>A	c.(421-423)TGG>TAG	p.W141*		NM_001263	NP_001254	Q92903	CDS1_HUMAN	CDP-diacylglycerol synthase 1	141					signal transduction|visual perception	endoplasmic reticulum membrane|integral to membrane	diacylglycerol cholinephosphotransferase activity|phosphatidate cytidylyltransferase activity			large_intestine(2)|ovary(1)|breast(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.00101)		GATCTACCATGGTTTAGAACA	0.343													4	11					0	0	1	0	0
CFI	3426	broad.mit.edu	37	4	110687959	110687959	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:110687959C>T	uc003hzr.3	-	2	287	c.79G>A	c.(79-81)GAT>AAT	p.D27N	CFI_uc011cft.1_Missense_Mutation_p.D27N|CFI_uc003hzs.3_Missense_Mutation_p.D27N	NM_000204	NP_000195	P05156	CFAI_HUMAN	complement factor I preproprotein	27					complement activation, classical pathway|innate immune response|proteolysis	extracellular space|membrane	scavenger receptor activity|serine-type endopeptidase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000331)		TCCACCAGATCCTCTTGAGAT	0.393													14	25					0	0	1	0	0
GYPB	2994	broad.mit.edu	37	4	144920579	144920579	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:144920579G>A	uc003ijm.1	-	3	216	c.160C>T	c.(160-162)CGT>TGT	p.R54C	GYPA_uc003ijn.2_Intron|GYPB_uc011chs.1_RNA|GYPB_uc011cht.1_RNA|GYPB_uc011chu.1_RNA|GYPB_uc010ioo.1_RNA|GYPB_uc010iop.2_RNA|GYPB_uc011chv.1_RNA|GYPB_uc011chw.1_RNA|GYPB_uc011chx.1_Intron|GYPB_uc011chy.1_RNA|GYPB_uc011chz.1_RNA	NM_002100	NP_002091	P06028	GLPB_HUMAN	glycophorin B precursor	54	Extracellular (Potential).		R -> H (in Mit antigen).			integral to plasma membrane					0	all_hematologic(180;0.158)					ACAGTGAAACGATGGACAAGT	0.313													3	6					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155242266	155242266	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:155242266C>T	uc003inw.2	-	14	2920	c.2920G>A	c.(2920-2922)GAT>AAT	p.D974N		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	974	Cadherin 8.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		TGAAGGTGATCAGATGACTTT	0.338													5	23					0	0	1	0	0
ACCN5	51802	broad.mit.edu	37	4	156773408	156773408	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:156773408G>A	uc003ipe.1	-	4	693	c.646C>T	c.(646-648)CTC>TTC	p.L216F		NM_017419	NP_059115	Q9NY37	ACCN5_HUMAN	amiloride-sensitive cation channel 5,	216	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0464)|Kidney(143;0.058)|COAD - Colon adenocarcinoma(41;0.141)		TTTGCTTGGAGAGTTTCACCA	0.353													7	32					0	0	1	0	0
TRIM61	391712	broad.mit.edu	37	4	165890966	165890966	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:165890966C>T	uc003iqw.2	-	3	800	c.189G>A	c.(187-189)AGG>AGA	p.R63R		NM_001012414	NP_001012414	Q5EBN2	TRI61_HUMAN	tripartite motif-containing 61	63						intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.109)		GBM - Glioblastoma multiforme(119;0.155)		TTATAAATTTCCTTTCTGGAC	0.453													13	73					0	0	1	0	0
SPOCK3	50859	broad.mit.edu	37	4	167656116	167656116	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:167656116C>T	uc003iri.1	-	12	1408	c.1267G>A	c.(1267-1269)GGG>AGG	p.G423R	SPOCK3_uc011cjp.1_Missense_Mutation_p.G380R|SPOCK3_uc011cjq.1_Missense_Mutation_p.G432R|SPOCK3_uc011cjr.1_Missense_Mutation_p.G303R|SPOCK3_uc003irj.1_Missense_Mutation_p.G420R|SPOCK3_uc011cjs.1_Missense_Mutation_p.G372R|SPOCK3_uc011cjt.1_Missense_Mutation_p.G331R|SPOCK3_uc011cju.1_Missense_Mutation_p.G316R|SPOCK3_uc011cjv.1_Missense_Mutation_p.G325R	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	423	Asp-rich.				signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		tcatcatccccttcatcttca	0.035													5	13					0	0	1	0	0
GALNTL6	442117	broad.mit.edu	37	4	173942751	173942751	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:173942751G>A	uc003isv.2	+	12	2349	c.1613G>A	c.(1612-1614)GGG>GAG	p.G538E		NM_001034845	NP_001030017	Q49A17	GLTL6_HUMAN	N-acetylgalactosaminyltransferase-like 6	538	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(2)|ovary(1)|skin(1)	4						GGCATGAAGGGGAACCAGCTC	0.463													42	79					0	0	1	0	0
WDR17	116966	broad.mit.edu	37	4	177069291	177069291	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:177069291C>T	uc003iuj.2	+	14	1930	c.1774C>T	c.(1774-1776)CGA>TGA	p.R592*	WDR17_uc003iuk.2_Nonsense_Mutation_p.R568*|WDR17_uc003ium.3_Nonsense_Mutation_p.R568*|WDR17_uc003iul.1_Intron|WDR17_uc003iun.2_5'Flank	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	592	WD 10.									ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		CAGTACCGTTCGAATCTGGGA	0.323													21	31					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183714018	183714018	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:183714018G>A	uc003ivd.1	+	25	6230	c.6193G>A	c.(6193-6195)GAT>AAT	p.D2065N		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	2065	Extracellular (Potential).|YD 15.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TATATATTATGATATTAACCA	0.388													19	18					0	0	1	0	0
KLKB1	3818	broad.mit.edu	37	4	187172799	187172799	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:187172799G>T	uc003iyy.2	+	9	1098	c.1027G>T	c.(1027-1029)GAG>TAG	p.E343*	KLKB1_uc011clc.1_Nonsense_Mutation_p.E141*|KLKB1_uc011cld.1_Nonsense_Mutation_p.E305*	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	343	Apple 4.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		CTGTAAGGAAGAGAAGTAAAG	0.363													10	32					2.17888e-05	2.19837e-05	1	1	0
TRIML2	205860	broad.mit.edu	37	4	189012760	189012760	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:189012760G>C	uc003izl.2	-	7	967	c.931C>G	c.(931-933)CTC>GTC	p.L311V	TRIML2_uc003izj.1_Missense_Mutation_p.L139V|TRIML2_uc003izk.1_Missense_Mutation_p.L119V|TRIML2_uc011cle.1_Missense_Mutation_p.L386V	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	311	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		TCCAGGAAGAGCCTTTTCAGA	0.537													58	136					0	0	1	0	0
TRIML1	339976	broad.mit.edu	37	4	189060977	189060977	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr4:189060977G>A	uc003izm.1	+	1	380	c.265G>A	c.(265-267)GAG>AAG	p.E89K		NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	89					multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		GCTGCAGAGCGAGGATGAGCA	0.662													25	65					0	0	1	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5303383	5303383	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr5:5303383G>A	uc003jdl.2	+	19	2930	c.2792G>A	c.(2791-2793)TGG>TAG	p.W931*	ADAMTS16_uc003jdk.1_Nonsense_Mutation_p.W931*	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	931	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						CTGCCCAGCTGGTCCGTGGGG	0.657													6	14					0	0	1	0	0
TARS	6897	broad.mit.edu	37	5	33461376	33461376	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr5:33461376C>T	uc003jhy.2	+	13	1822	c.1527C>T	c.(1525-1527)ATC>ATT	p.I509I	TARS_uc011cob.1_Silent_p.I497I|TARS_uc010iup.1_Silent_p.I450I|TARS_uc011coc.1_Silent_p.I530I|TARS_uc003jhz.2_Silent_p.I405I|TARS_uc011cod.1_Silent_p.I388I	NM_152295	NP_689508	P26639	SYTC_HUMAN	threonyl-tRNA synthetase	509					threonyl-tRNA aminoacylation	cytosol	ATP binding|protein homodimerization activity|threonine-tRNA ligase activity			ovary(2)	2					L-Threonine(DB00156)	TTGGAGATATCGAAGTATGGG	0.373													14	27					0	0	1	0	0
EGFLAM	133584	broad.mit.edu	37	5	38350718	38350718	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr5:38350718A>G	uc003jlc.1	+	4	731	c.407A>G	c.(406-408)CAA>CGA	p.Q136R	EGFLAM_uc003jlb.1_Missense_Mutation_p.Q136R	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	136						cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					ACTTTGTCCCAAGGTAAAGTA	0.378													28	38					0	0	1	0	0
OSMR	9180	broad.mit.edu	37	5	38881715	38881715	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr5:38881715G>A	uc003jln.1	+	4	634	c.267G>A	c.(265-267)GTG>GTA	p.V89V	OSMR_uc003jlm.1_Silent_p.V89V	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	89	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					GCACCACTGTGAAGTGGAACC	0.433													19	49					0	0	1	0	0
C9	735	broad.mit.edu	37	5	39341263	39341263	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr5:39341263C>T	uc003jlv.3	-	4	550	c.461G>A	c.(460-462)CGA>CAA	p.R154Q		NM_001737	NP_001728	P02748	CO9_HUMAN	complement component 9 precursor	154	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis|hemolysis by symbiont of host erythrocytes	extracellular region|membrane attack complex					0	all_lung(31;0.000197)	all_neural(839;7.57e-10)|Lung NSC(810;2.62e-08)|Ovarian(839;0.00384)|Breast(839;0.0184)|Myeloproliferative disorder(839;0.0511)	Epithelial(62;0.158)			GCCTGCTGTTCGTGCCAGCTC	0.458													40	53					0	0	1	0	0
HSPB3	8988	broad.mit.edu	37	5	53752062	53752062	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr5:53752062G>A	uc003jph.1	+	1	618	c.443G>A	c.(442-444)GGG>GAG	p.G148E		NM_006308	NP_006299	Q12988	HSPB3_HUMAN	heat shock 27kDa protein 3	148					cell death|response to heat|response to unfolded protein	cytoplasm|nucleus					0		Lung NSC(810;0.00104)				GATCCAGTTGGGACTAAGTGA	0.438													42	72					0	0	1	0	0
MAST4	375449	broad.mit.edu	37	5	66441150	66441150	+	Missense_Mutation	SNP	C	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr5:66441150C>A	uc003jut.1	+	22	2538	c.2470C>A	c.(2470-2472)CAG>AAG	p.Q824K	MAST4_uc003juu.1_Missense_Mutation_p.Q834K|MAST4_uc011cra.1_Missense_Mutation_p.Q807K|MAST4_uc003juv.2_Missense_Mutation_p.Q819K|MAST4_uc003juw.2_Missense_Mutation_p.Q819K	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	1016						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		AGAGTGTGCCCAGGAGGAGCC	0.617													8	36					0.000442599	0.000443386	1	1	0
CMYA5	202333	broad.mit.edu	37	5	79084869	79084869	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr5:79084869G>T	uc003kgc.2	+	10	11703	c.11631G>T	c.(11629-11631)AGG>AGT	p.R3877S		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	3877	Fibronectin type-III 2.					perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		TCTATGTGAGGGCCATCAATG	0.403													39	70					5.44703e-19	5.60606e-19	1	1	0
GPR98	84059	broad.mit.edu	37	5	90059162	90059162	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr5:90059162C>T	uc003kju.2	+	59	12257	c.12161C>T	c.(12160-12162)TCA>TTA	p.S4054L	GPR98_uc003kjt.2_Missense_Mutation_p.S1760L	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4054	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GACCCTGATTCATATGTGACA	0.413													9	19					0	0	1	0	0
RIOK2	55781	broad.mit.edu	37	5	96512932	96512932	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr5:96512932C>T	uc003kmz.2	-	4	496	c.386G>A	c.(385-387)AGA>AAA	p.R129K	RIOK2_uc003kna.3_Missense_Mutation_p.R129K	NM_018343	NP_060813	Q9BVS4	RIOK2_HUMAN	RIO kinase 2 isoform 1	129							ATP binding|protein serine/threonine kinase activity			kidney(1)	1		all_cancers(142;0.000125)|all_epithelial(76;8.48e-07)|all_lung(232;0.0131)|Lung NSC(167;0.0161)|Colorectal(57;0.0676)|Ovarian(225;0.105)		COAD - Colon adenocarcinoma(37;0.0657)		AAACGAGGTTCTTCCTAGTCT	0.338													11	22					0	0	1	0	0
CAMK4	814	broad.mit.edu	37	5	110710562	110710562	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr5:110710562C>T	uc011cvj.1	+	4	354	c.255C>T	c.(253-255)ATC>ATT	p.I85I	CAMK4_uc003kpf.2_Silent_p.I85I|CAMK4_uc010jbv.2_Intron	NM_001744	NP_001735	Q16566	KCC4_HUMAN	calcium/calmodulin-dependent protein kinase IV	85	Protein kinase.				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|synaptic transmission	cytosol|nucleoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(3)|lung(2)	5		all_cancers(142;1.49e-05)|all_epithelial(76;1.82e-07)|Prostate(80;0.00964)|all_lung(232;0.0181)|Lung NSC(167;0.0298)|Ovarian(225;0.0446)|Colorectal(57;0.0478)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;3.79e-08)|Epithelial(69;5.29e-08)|all cancers(49;1.1e-05)|COAD - Colon adenocarcinoma(37;0.109)		ACAAAAAAATCGTAAGAACTG	0.378													12	14					0	0	1	0	0
HSPA4	3308	broad.mit.edu	37	5	132409815	132409815	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr5:132409815G>A	uc003kyj.2	+	6	941	c.660G>A	c.(658-660)CTG>CTA	p.L220L		NM_002154	NP_002145	P34932	HSP74_HUMAN	heat shock 70kDa protein 4	220					cellular chaperone-mediated protein complex assembly|protein import into mitochondrial outer membrane|response to unfolded protein	cytoplasm|nucleus	ATP binding			lung(1)|breast(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GAGGAAAACTGAAAGTAAGTA	0.279													13	7					0	0	1	0	0
PCDHA1	56147	broad.mit.edu	37	5	140167270	140167270	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr5:140167270G>A	uc003lhb.2	+	1	1395	c.1395G>A	c.(1393-1395)AAG>AAA	p.K465K	PCDHA1_uc003lha.2_Silent_p.K465K|PCDHA1_uc003lgz.2_Silent_p.K465K	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	465	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TATTCGTGAAGGAGAACAACC	0.667													44	41					0	0	1	0	0
PCDHA13	56136	broad.mit.edu	37	5	140262677	140262677	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr5:140262677G>A	uc003lif.2	+	1	824	c.824G>A	c.(823-825)GGA>GAA	p.G275E	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Missense_Mutation_p.G275E|PCDHA13_uc003lid.2_Missense_Mutation_p.G275E	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	275	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTACAAATGGAGATATAGTT	0.383													29	11					0	0	1	0	0
CYFIP2	26999	broad.mit.edu	37	5	156788492	156788492	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr5:156788492C>T	uc003lwq.2	+	28	3063	c.2925C>T	c.(2923-2925)TTC>TTT	p.F975F	CYFIP2_uc011ddn.1_Silent_p.F949F|CYFIP2_uc011ddo.1_Silent_p.F779F|CYFIP2_uc003lwr.2_Silent_p.F975F|CYFIP2_uc003lws.2_Silent_p.F975F|CYFIP2_uc003lwt.2_Silent_p.F878F|CYFIP2_uc011ddp.1_Silent_p.F709F	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	1000					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGGAGTTCTTCCACCACCAGC	0.547													18	14					0	0	1	0	0
PANK3	79646	broad.mit.edu	37	5	167990967	167990967	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr5:167990967C>T	uc003lzz.1	-	4	1039	c.739G>A	c.(739-741)GAC>AAC	p.D247N	uc003maa.1_5'Flank|MIR103-1_hsa-mir-103-1|MI0000109_5'Flank	NM_024594	NP_078870	Q9H999	PANK3_HUMAN	pantothenate kinase 3	247					coenzyme A biosynthetic process	cytoplasm|nucleus	ATP binding|pantothenate kinase activity			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0441)|all_lung(126;0.0909)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0989)|OV - Ovarian serous cystadenocarcinoma(192;0.147)|Epithelial(171;0.188)		ACCAGCTTGTCAGCTTGTGTG	0.418													39	82					0	0	1	0	0
CCDC99	54908	broad.mit.edu	37	5	169028625	169028625	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr5:169028625C>T	uc003mae.3	+	11	1945	c.1666C>T	c.(1666-1668)CCC>TCC	p.P556S	CCDC99_uc010jjj.2_Missense_Mutation_p.P485S|CCDC99_uc011deq.1_Missense_Mutation_p.P373S|CCDC99_uc010jjk.2_Missense_Mutation_p.P282S	NM_017785	NP_060255	Q96EA4	SPDLY_HUMAN	coiled-coil domain containing 99	556					cell division|establishment of mitotic spindle orientation|mitotic metaphase plate congression|mitotic prometaphase|protein localization to kinetochore	condensed chromosome outer kinetochore|cytosol|microtubule organizing center|nucleus|spindle pole	kinetochore binding|protein binding			ovary(1)|liver(1)	2	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCCTAACTCTCCCAGGTCAGT	0.488													7	12					0	0	1	0	0
CLTB	1212	broad.mit.edu	37	5	175823530	175823530	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr5:175823530G>A	uc003meh.2	-	6	643	c.468C>T	c.(466-468)ATC>ATT	p.I156I	CLTB_uc003mei.2_Intron|CLTB_uc011dfn.1_Intron	NM_007097	NP_009028	P09497	CLCB_HUMAN	clathrin, light polypeptide isoform b	156					intracellular protein transport|vesicle-mediated transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle	protein binding|structural molecule activity				0	all_cancers(89;0.00522)|Renal(175;0.000269)|Lung NSC(126;0.0105)|all_lung(126;0.0168)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.098)		CTTTGTCAGCGATCCTTgagg	0.279													11	27					0	0	1	0	0
HK3	3101	broad.mit.edu	37	5	176308764	176308764	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr5:176308764G>A	uc003mfa.2	-	17	2414	c.2322C>T	c.(2320-2322)TTC>TTT	p.F774F	HK3_uc003mez.2_Silent_p.F330F	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	774	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCTGGCCCCGGAAGAGAACGC	0.537													44	84					0	0	1	0	0
UIMC1	51720	broad.mit.edu	37	5	176409576	176409576	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr5:176409576G>A	uc011dfp.1	-	2	208	c.41C>T	c.(40-42)TCT>TTT	p.S14F	UIMC1_uc003mfc.1_5'UTR|UIMC1_uc003mfd.1_5'UTR|UIMC1_uc003mfg.1_Missense_Mutation_p.S14F|UIMC1_uc003mfh.1_Missense_Mutation_p.S14F|UIMC1_uc010jkj.1_Missense_Mutation_p.S14F|UIMC1_uc011dfq.1_Missense_Mutation_p.S14F	NM_016290	NP_057374	Q96RL1	UIMC1_HUMAN	ubiquitin interaction motif containing 1	14	Necessary for transcriptional repression.				double-strand break repair|G2/M transition DNA damage checkpoint|histone H2A K63-linked deubiquitination|negative regulation of transcription, DNA-dependent|positive regulation of DNA repair|response to ionizing radiation|transcription, DNA-dependent	BRCA1-A complex	histone binding|K63-linked polyubiquitin binding			ovary(3)|skin(1)	4	all_cancers(89;7.96e-05)|Renal(175;0.000269)|Lung NSC(126;0.00476)|all_lung(126;0.00806)	Medulloblastoma(196;0.0145)|all_neural(177;0.0325)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CAGGTTCCGAGATTCGGAGAC	0.373													27	32					0	0	1	0	0
FGFR4	2264	broad.mit.edu	37	5	176517411	176517411	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr5:176517411C>T	uc003mfl.2	+	3	279	c.112C>T	c.(112-114)CTG>TTG	p.L38L	FGFR4_uc003mfm.2_Silent_p.L38L|FGFR4_uc011dfu.1_Silent_p.L38L|FGFR4_uc011dfv.1_RNA|FGFR4_uc003mfn.1_Silent_p.L38L|FGFR4_uc011dfw.1_Silent_p.L38L|FGFR4_uc003mfo.2_Silent_p.L38L	NM_002011	NP_002002	P22455	FGFR4_HUMAN	fibroblast growth factor receptor 4 isoform 1	38	Ig-like C2-type 1.|Extracellular (Potential).				insulin receptor signaling pathway|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity			lung(11)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|prostate(1)	16	all_cancers(89;5.93e-05)|Renal(175;0.000269)|Lung NSC(126;0.0088)|all_lung(126;0.0142)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		Palifermin(DB00039)	GGCTCCCAGCCTGGAGCAGCA	0.652										TSP Lung(9;0.080)			22	40					0	0	1	0	0
TBC1D9B	23061	broad.mit.edu	37	5	179290935	179290935	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr5:179290935G>A	uc003mlh.2	-	22	3303	c.3266C>T	c.(3265-3267)CCC>CTC	p.P1089L	TBC1D9B_uc003mli.2_Missense_Mutation_p.P1072L|TBC1D9B_uc003mlj.2_Missense_Mutation_p.P1071L|TBC1D9B_uc003mlf.2_Missense_Mutation_p.P163L|TBC1D9B_uc003mlg.2_Missense_Mutation_p.P248L|TBC1D9B_uc011dgv.1_Missense_Mutation_p.P248L	NM_198868	NP_942568	Q66K14	TBC9B_HUMAN	TBC1 domain family, member 9B (with GRAM domain)	1089						integral to membrane|intracellular	calcium ion binding|Rab GTPase activator activity			breast(1)|skin(1)	2	all_cancers(89;0.000197)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0236)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			ATGCAGTTCGGGTGCTGGTGG	0.647													37	84					0	0	1	0	0
RIOK1	83732	broad.mit.edu	37	6	7396957	7396957	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr6:7396957C>T	uc003mxn.2	+	4	563	c.389C>T	c.(388-390)TCC>TTC	p.S130F	RIOK1_uc003mxm.1_Missense_Mutation_p.S26F	NM_031480	NP_113668	Q9BRS2	RIOK1_HUMAN	RIO kinase 1 isoform 1	130							ATP binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|skin(1)	4	Ovarian(93;0.0418)					GTTACTGATTCCGTCATAAAT	0.308													12	32					0	0	1	0	0
DEK	7913	broad.mit.edu	37	6	18237645	18237645	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr6:18237645T>C	uc003ncr.1	-	8	1058	c.865A>G	c.(865-867)ACC>GCC	p.T289A	DEK_uc011djf.1_Missense_Mutation_p.T255A|DEK_uc011djg.1_RNA	NM_003472	NP_003463	P35659	DEK_HUMAN	DEK oncogene isoform 1	289					chromatin modification|regulation of transcription from RNA polymerase II promoter|signal transduction|transcription from RNA polymerase II promoter|viral genome replication	nucleus	DNA binding|histone binding			kidney(1)	1	Ovarian(93;0.00769)|Breast(50;0.0495)	all_hematologic(90;0.053)	OV - Ovarian serous cystadenocarcinoma(7;0.00291)|all cancers(50;0.031)|Epithelial(50;0.0332)			TTCTTGGTGGTGCTGCTATCT	0.303			T	NUP214	AML								11	20					0	0	1	0	0
SLC17A4	10050	broad.mit.edu	37	6	25773553	25773553	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr6:25773553G>A	uc003nfe.2	+	7	876	c.757G>A	c.(757-759)GAT>AAT	p.D253N	SLC17A4_uc011djx.1_Intron|SLC17A4_uc003nff.1_Intron|SLC17A4_uc003nfg.2_Missense_Mutation_p.D190N|SLC17A4_uc010jqa.2_5'Flank	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	253					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						CATTTATGATGATCCTGTGAA	0.438													38	61					0	0	1	0	0
OR14J1	442191	broad.mit.edu	37	6	29274630	29274630	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr6:29274630C>T	uc011dln.1	+	1	164	c.164C>T	c.(163-165)TCC>TTC	p.S55F		NM_030946	NP_112208	Q9UGF5	O14J1_HUMAN	olfactory receptor, family 5, subfamily U member	55	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CGTCTCCATTCCCCCATGTAT	0.473													85	128					0	0	1	0	0
RDBP	7936	broad.mit.edu	37	6	31922134	31922134	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr6:31922134G>A	uc003nyk.2	-	8	1032	c.828C>T	c.(826-828)CTC>CTT	p.L276L	RDBP_uc011dot.1_Silent_p.L246L|RDBP_uc003nyl.1_Silent_p.L216L	NM_002904	NP_002895	P18615	NELFE_HUMAN	RD RNA-binding protein	276	RRM.				positive regulation of viral transcription|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	mitochondrion|nucleoplasm	nucleotide binding|protein binding|RNA binding				0						AGGCCCCACGGAGAAGGGTGG	0.507													42	80					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32024646	32024647	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr6:32024646_32024647GG>AA	uc003nzl.2	-	23	8061_8062	c.7859_7860CC>TT	c.(7858-7860)ACC>ATT	p.T2620I		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2680					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CAGGGGTCATGGTAGGCACTGC	0.619													48	108					0	0	1	0	0
SLC26A8	116369	broad.mit.edu	37	6	35923188	35923188	+	Missense_Mutation	SNP	T	G	G			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr6:35923188T>G	uc003olm.2	-	17	2084	c.1973A>C	c.(1972-1974)GAA>GCA	p.E658A	SLC26A8_uc010jwa.2_RNA|SLC26A8_uc003olk.2_Missense_Mutation_p.E240A|SLC26A8_uc003oln.2_Missense_Mutation_p.E658A|SLC26A8_uc003oll.2_Missense_Mutation_p.E553A	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	658	STAS.|Cytoplasmic (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						CACTTGGTCTTCGGATGCAGT	0.443													80	89					0	0	1	0	0
ZNF318	24149	broad.mit.edu	37	6	43316306	43316307	+	Missense_Mutation	DNP	AC	CT	CT			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr6:43316306_43316307AC>CT	uc003oux.2	-	6	2905_2906	c.2827_2828GT>AG	c.(2827-2829)GTG>AGG	p.V943R	ZNF318_uc003ouw.2_RNA	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	943	Potential.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			ACTCACCTCCACCAAGAGAGGA	0.46													58	69					0	0	1	0	0
ASCC3	10973	broad.mit.edu	37	6	101053472	101053472	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr6:101053472G>A	uc003pqk.2	-	33	5478	c.5149C>T	c.(5149-5151)CTT>TTT	p.L1717F		NM_006828	NP_006819	Q8N3C0	HELC1_HUMAN	activating signal cointegrator 1 complex subunit	1717	Helicase C-terminal 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(5)|skin(1)	6		all_cancers(76;1.45e-07)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(87;0.00149)|Hepatocellular(1;0.0893)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0539)|all cancers(137;0.103)|GBM - Glioblastoma multiforme(226;0.199)		GGTTCATAAAGAAATTTTTTA	0.338													18	7					0	0	1	0	0
GRIK2	2898	broad.mit.edu	37	6	102124506	102124506	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr6:102124506C>T	uc003pqp.3	+	4	799	c.550C>T	c.(550-552)CGT>TGT	p.R184C	GRIK2_uc003pqn.2_Missense_Mutation_p.R184C|GRIK2_uc003pqo.3_Missense_Mutation_p.R184C|GRIK2_uc010kcw.2_Missense_Mutation_p.R184C	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	184	Extracellular (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	AGGTCTCATTCGTTTGCAAGA	0.313													4	10					0	0	1	0	0
CLVS2	134829	broad.mit.edu	37	6	123377059	123377059	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr6:123377059G>T	uc003pzi.1	+	5	1653	c.784G>T	c.(784-786)GCA>TCA	p.A262S		NM_001010852	NP_001010852	Q5SYC1	CLVS2_HUMAN	retinaldehyde binding protein 1-like 2	262					lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						GGGGACATGGGCAAGAACACT	0.478													5	70					0.000602214	0.000602214	1	1	0
PTPRK	5796	broad.mit.edu	37	6	128404961	128404961	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr6:128404961G>A	uc003qbk.2	-	9	1841	c.1474C>T	c.(1474-1476)CCC>TCC	p.P492S	PTPRK_uc003qbj.2_Missense_Mutation_p.P492S|PTPRK_uc010kfc.2_Missense_Mutation_p.P492S|PTPRK_uc011ebu.1_Missense_Mutation_p.P492S|PTPRK_uc003qbl.1_Missense_Mutation_p.P362S|PTPRK_uc011ebv.1_Missense_Mutation_p.P492S	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	492	Extracellular (Potential).|Fibronectin type-III 3.				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		ACTGGTACGGGACCAGGCACT	0.318													12	9					0	0	1	0	0
ARHGAP18	93663	broad.mit.edu	37	6	129901277	129901277	+	Splice_Site	SNP	C	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr6:129901277C>A	uc003qbr.2	-	14	1928	c.1839_splice	c.e14-1	p.S613_splice	ARHGAP18_uc011ebw.1_Splice_Site_p.W572_splice	NM_033515	NP_277050	Q8N392	RHG18_HUMAN	Rho GTPase activating protein 18						regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			ovary(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(136;0.0621)|GBM - Glioblastoma multiforme(226;0.0638)|all cancers(137;0.074)		GGCAACCCCACTATGAGGGAC	0.363													3	17					2.56e-06	2.59683e-06	1	1	0
ENPP3	5169	broad.mit.edu	37	6	131999021	131999021	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr6:131999021A>G	uc003qcu.3	+	12	1299	c.952A>G	c.(952-954)ACC>GCC	p.T318A	ENPP3_uc010kfo.1_RNA|ENPP3_uc010kfp.1_RNA|ENPP3_uc010kfq.2_RNA|ENPP3_uc003qcv.2_Missense_Mutation_p.T318A	NM_005021	NP_005012	O14638	ENPP3_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	318	Extracellular (Potential).|Phosphodiesterase.				immune response|nucleoside triphosphate catabolic process|phosphate metabolic process	extracellular region|integral to plasma membrane|perinuclear region of cytoplasm	metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity			ovary(3)|skin(1)	4	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0252)|OV - Ovarian serous cystadenocarcinoma(155;0.0511)		CAGGTTTTATACCATGTATTT	0.358													15	7					0	0	1	0	0
BCLAF1	9774	broad.mit.edu	37	6	136599532	136599532	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr6:136599532C>T	uc003qgx.1	-	4	740	c.487G>A	c.(487-489)GAA>AAA	p.E163K	BCLAF1_uc003qgw.1_Missense_Mutation_p.E163K|BCLAF1_uc003qgy.1_Missense_Mutation_p.E161K|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.E161K	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	163					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		GTTTGTTTTTCCTGAGACCCT	0.433													24	126					0	0	1	0	0
KIAA1244	57221	broad.mit.edu	37	6	138656046	138656046	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr6:138656046C>T	uc003qhu.2	+	33	6063	c.6063C>T	c.(6061-6063)ACC>ACT	p.T2021T		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	2021					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		CCGACAAGACCATTTCAAAGT	0.527													5	1					0	0	1	0	0
UTRN	7402	broad.mit.edu	37	6	144832199	144832199	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr6:144832199C>T	uc003qkt.2	+	34	4976	c.4884C>T	c.(4882-4884)GTC>GTT	p.V1628V		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	1628	Interaction with SYNM.|Spectrin 11.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		GGCTCTGCGTCCTTAACGCTG	0.443													58	29					0	0	1	0	0
FTSJ2	29960	broad.mit.edu	37	7	2275003	2275003	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:2275003G>A	uc003slm.2	-	3	524	c.495C>T	c.(493-495)CTC>CTT	p.L165L	MAD1L1_uc003slh.1_5'Flank|MAD1L1_uc003slf.1_5'Flank|MAD1L1_uc003slg.1_5'Flank|MAD1L1_uc010ksh.1_5'Flank|MAD1L1_uc003sli.1_5'Flank|MAD1L1_uc010ksi.1_5'Flank|MAD1L1_uc010ksj.2_5'Flank|FTSJ2_uc003slk.2_Silent_p.L11L|FTSJ2_uc003sll.2_Silent_p.L11L|FTSJ2_uc003sln.2_RNA|FTSJ2_uc003slo.2_Silent_p.L11L	NM_013393	NP_037525	Q9UI43	RRMJ2_HUMAN	FtsJ homolog 2	165					cell proliferation	mitochondrion|nucleolus	nucleic acid binding|rRNA (uridine-2'-O-)-methyltransferase activity			ovary(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0822)|OV - Ovarian serous cystadenocarcinoma(56;2.7e-14)		TGTCATGATCGAGGTCCCGGA	0.577													21	45					0	0	1	0	0
STK31	56164	broad.mit.edu	37	7	23768743	23768743	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:23768743G>A	uc003sws.3	+	6	425	c.358G>A	c.(358-360)GAA>AAA	p.E120K	STK31_uc003swt.3_Missense_Mutation_p.E97K|STK31_uc011jze.1_Missense_Mutation_p.E120K|STK31_uc010kuq.2_Missense_Mutation_p.E97K	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	120	Tudor.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						TGGAAATACTGAAATTCTAAA	0.358													11	21					0	0	1	0	0
TNS3	64759	broad.mit.edu	37	7	47343129	47343129	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:47343129G>A	uc003tnv.2	-	22	3243	c.2876C>T	c.(2875-2877)TCC>TTC	p.S959F	TNS3_uc003tnw.2_Missense_Mutation_p.S959F	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	959						focal adhesion	protein binding			ovary(4)	4						CCCCAGCAGGGAAACCATGGG	0.612													7	13					0	0	1	0	0
TNS3	64759	broad.mit.edu	37	7	47454723	47454723	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:47454723G>A	uc003tnv.2	-	11	922	c.555C>T	c.(553-555)CTC>CTT	p.L185L	TNS3_uc003tnw.2_Silent_p.L185L|TNS3_uc010kyo.1_Silent_p.L185L	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	185	C2 tensin-type.					focal adhesion	protein binding			ovary(4)	4						GGGTGCCGTGGAGGATGACAA	0.587													9	15					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47869643	47869643	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:47869643G>A	uc003tny.1	-	43	6553	c.6553C>T	c.(6553-6555)CTT>TTT	p.L2185F	C7orf69_uc003toa.1_Intron|PKD1L1_uc003tob.2_5'Flank	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2185	Helical; (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						CTTACCATAAGTGGCTGGGTG	0.527													8	17					0	0	1	0	0
ZNF727	442319	broad.mit.edu	37	7	63538343	63538343	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:63538343C>T	uc011kdm.1	+	4	1095	c.916C>T	c.(916-918)CAT>TAT	p.H306Y		NM_001159522	NP_001152994	A8MUV8	ZN727_HUMAN	zinc finger protein 727	306	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TAAGAGAATTCATACTGGAGA	0.368													3	8					0	0	1	0	0
GTF2I	2969	broad.mit.edu	37	7	74159195	74159195	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:74159195C>T	uc003uau.2	+	21	2219	c.1849C>T	c.(1849-1851)CCC>TCC	p.P617S	GTF2I_uc003uav.2_Missense_Mutation_p.P596S|GTF2I_uc003uaw.2_Missense_Mutation_p.P597S|GTF2I_uc003uay.2_Missense_Mutation_p.P595S|GTF2I_uc003uax.2_Missense_Mutation_p.P576S	NM_032999	NP_127492	P78347	GTF2I_HUMAN	general transcription factor IIi isoform 1	617	GTF2I-like 4.				negative regulation of angiogenesis|signal transduction|transcription initiation from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0						AGAGGGGATTCCCTTCCGAAG	0.458													13	33					0	0	1	0	0
CCDC146	57639	broad.mit.edu	37	7	76903013	76903013	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:76903013G>A	uc003uga.2	+	10	1303	c.1176G>A	c.(1174-1176)ATG>ATA	p.M392I	CCDC146_uc010ldp.2_Intron	NM_020879	NP_065930	Q8IYE0	CC146_HUMAN	coiled-coil domain containing 146	392										ovary(1)|central_nervous_system(1)	2		all_cancers(73;0.128)|all_lung(88;0.0986)|all_epithelial(88;0.163)|Myeloproliferative disorder(862;0.205)				ATTTCCAGATGGAAGCTATCC	0.264													18	33					0	0	1	0	0
MAGI2	9863	broad.mit.edu	37	7	77649243	77649243	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:77649243C>T	uc003ugx.2	-	22	4011	c.3757G>A	c.(3757-3759)GAA>AAA	p.E1253K	MAGI2_uc003ugy.2_Missense_Mutation_p.E1239K	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	1253						cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				ACGCCTACTTCCGGCAGACCT	0.672													12	24					0	0	1	0	0
MAGI2	9863	broad.mit.edu	37	7	77830494	77830494	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:77830494C>T	uc003ugx.2	-	11	2318	c.2064G>A	c.(2062-2064)TGG>TGA	p.W688*	MAGI2_uc003ugy.2_Nonsense_Mutation_p.W688*|MAGI2_uc010ldx.1_Nonsense_Mutation_p.W297*|MAGI2_uc010ldy.1_Nonsense_Mutation_p.W297*	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	688						cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				TTGGAGTTTTCCATGGAGAAA	0.254													6	12					0	0	1	0	0
ABCB4	5244	broad.mit.edu	37	7	87053346	87053346	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:87053346G>A	uc003uiv.1	-	17	2163	c.2087C>T	c.(2086-2088)TCC>TTC	p.S696F	ABCB4_uc003uiw.1_Missense_Mutation_p.S696F|ABCB4_uc003uix.1_Missense_Mutation_p.S696F	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	696	Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					CTTCAGAAAGGACACTGGTGG	0.388													47	88					0	0	1	0	0
COL1A2	1278	broad.mit.edu	37	7	94049584	94049584	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:94049584C>T	uc003ung.1	+	35	2590	c.2119C>T	c.(2119-2121)CCT>TCT	p.P707S	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfi.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	707			Missing (in OI2A).|Missing (in OI2A).		axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	tcctgctggtcctCGGGGAAG	0.363										HNSCC(75;0.22)			38	60					0	0	1	0	0
STAG3	10734	broad.mit.edu	37	7	99799476	99799476	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:99799476C>T	uc003utx.1	+	22	2443	c.2288C>T	c.(2287-2289)TCA>TTA	p.S763L	STAG3_uc010lgs.1_Missense_Mutation_p.S551L|STAG3_uc011kjk.1_Missense_Mutation_p.S705L|GATS_uc003uty.3_RNA|GATS_uc003utz.3_RNA|GATS_uc003uua.3_3'UTR|GATS_uc010lgt.2_RNA|STAG3_uc003uub.1_5'UTR	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	763					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					ATTTCTAAATCAGATGCTTCC	0.448													25	51					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100334177	100334177	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:100334177G>A	uc003uwj.2	+	4	343	c.178G>A	c.(178-180)GAT>AAT	p.D60N	ZAN_uc003uwk.2_Missense_Mutation_p.D60N|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	60	MAM 1.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			GTCCGCAGACGATGAAGACTG	0.607													91	138					0	0	1	0	0
ACHE	43	broad.mit.edu	37	7	100490867	100490867	+	Silent	SNP	G	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:100490867G>T	uc003uxd.2	-	1	1143	c.987C>A	c.(985-987)TCC>TCA	p.S329S	ACHE_uc003uxe.2_Silent_p.S329S|ACHE_uc003uxf.2_Silent_p.S329S|ACHE_uc003uxg.2_Silent_p.S329S|ACHE_uc003uxh.2_Silent_p.S329S|ACHE_uc003uxi.2_Silent_p.S329S|ACHE_uc003uxj.1_Silent_p.S448S	NM_000665	NP_000656	P22303	ACES_HUMAN	acetylcholinesterase isoform E4-E6 precursor	329					acetylcholine catabolic process in synaptic cleft|amyloid precursor protein metabolic process|cell adhesion|cell proliferation|choline metabolic process|DNA replication|muscle organ development|neurotransmitter biosynthetic process|osteoblast development|positive regulation of protein secretion|regulation of axonogenesis|regulation of dendrite morphogenesis|response to wounding|synapse assembly	anchored to membrane|axon|basal lamina|cell junction|cell surface|dendrite|endoplasmic reticulum lumen|extracellular space|Golgi apparatus|neuromuscular junction|nucleus|perinuclear region of cytoplasm|postsynaptic membrane|presynaptic membrane|synaptic cleft	acetylcholine binding|acetylcholinesterase activity|beta-amyloid binding|carboxylesterase activity|cholinesterase activity|collagen binding|laminin-1 binding|protein homodimerization activity|serine hydrolase activity			skin(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)				Ambenonium(DB01122)|Atropine(DB00572)|Choline(DB00122)|Decamethonium(DB01245)|Demecarium bromide(DB00944)|Donepezil(DB00843)|Edrophonium(DB01010)|Ephedrine(DB01364)|Galantamine(DB00674)|Gallamine Triethiodide(DB00483)|Isoflurophate(DB00677)|Neostigmine(DB01400)|Physostigmine(DB00981)|Pyridostigmine(DB00545)|Rivastigmine(DB00989)|Tacrine(DB00382)|Tubocurarine(DB01199)	CAGGCACGAAGGAGAACCGGA	0.592													18	38					6.94344e-10	7.06878e-10	1	1	0
MET	4233	broad.mit.edu	37	7	116397530	116397530	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:116397530C>T	uc003vij.2	+	7	2089	c.1902C>T	c.(1900-1902)TTC>TTT	p.F634F	MET_uc010lkh.2_Silent_p.F634F|MET_uc011knd.1_Silent_p.F634F|MET_uc011kne.1_Silent_p.F606F|MET_uc011knf.1_Silent_p.F634F|MET_uc011kng.1_Silent_p.F634F|MET_uc011knh.1_Silent_p.F634F|MET_uc011kni.1_Silent_p.F634F|MET_uc011knj.1_Silent_p.F204F	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	634	Extracellular (Potential).|IPT/TIG 1.				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			ATAAGCATTTCAATATGTCCA	0.348			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				21	13					0	0	1	0	0
GRM8	2918	broad.mit.edu	37	7	126086345	126086345	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:126086345C>T	uc003vlr.2	-	9	2823	c.2512G>A	c.(2512-2514)GTT>ATT	p.V838I	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.V838I|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	838	Helical; Name=7; (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	ATAATATAAACCTTGGGCATA	0.408										HNSCC(24;0.065)			23	61					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	131887492	131887492	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:131887492G>A	uc003vra.3	-	12	2728	c.2499C>T	c.(2497-2499)ACC>ACT	p.T833T		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	833	PSI 3.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						GCTGGCGCAGGGTGCACTGGC	0.642													17	44					0	0	1	0	0
SVOPL	136306	broad.mit.edu	37	7	138333786	138333786	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:138333786G>A	uc011kqh.1	-	7	631	c.631C>T	c.(631-633)CCG>TCG	p.P211S	SVOPL_uc003vue.2_Missense_Mutation_p.P59S	NM_001139456	NP_001132928	Q8N434	SVOPL_HUMAN	SVOP-like isoform 1	211	Helical; (Potential).					integral to membrane	transmembrane transporter activity				0						ATGATGCCCGGGATGGAGGCG	0.612													22	66					0	0	1	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138433971	138433971	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:138433971G>A	uc003vuf.2	-	11	1359	c.1121C>T	c.(1120-1122)GCT>GTT	p.A374V	ATP6V0A4_uc003vug.2_Missense_Mutation_p.A374V|ATP6V0A4_uc003vuh.2_Missense_Mutation_p.A374V	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	374	Cytoplasmic (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						CTGGAAGCCAGCTGTGAATTT	0.478													28	102					0	0	1	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453137	+	Missense_Mutation	DNP	AC	TT	TT	rs121913378		TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:140453136_140453137AC>TT	uc003vwc.3	-	15	1859_1860	c.1798_1799GT>AA	c.(1798-1800)GTG>AAG	p.V600K		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAGA	0.366	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)|V600M(IGR1_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				16	21					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141752712	141752712	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:141752712C>T	uc003vwy.2	+	26	3141	c.3087C>T	c.(3085-3087)GCC>GCT	p.A1029A		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1029	Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	ATGCCAATGCCTTCCCCTCCA	0.463													27	55					0	0	1	0	0
EPHB6	2051	broad.mit.edu	37	7	142562484	142562484	+	Missense_Mutation	SNP	G	A	A	rs55728646	by1000genomes	TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:142562484G>A	uc011kst.1	+	7	1713	c.926G>A	c.(925-927)CGA>CAA	p.R309Q	EPHB6_uc011ksu.1_Missense_Mutation_p.R309Q|EPHB6_uc003wbs.2_Missense_Mutation_p.R17Q|EPHB6_uc003wbt.2_5'UTR|EPHB6_uc003wbu.2_Missense_Mutation_p.R17Q|EPHB6_uc003wbv.2_5'Flank	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	309	Extracellular (Potential).|Cys-rich.		R -> Q.			extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					CAACCAGCACGAGGAGACAAG	0.657													37	113					0	0	1	0	0
EPHB6	2051	broad.mit.edu	37	7	142565375	142565375	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:142565375C>T	uc011kst.1	+	12	2547	c.1760C>T	c.(1759-1761)TCC>TTC	p.S587F	EPHB6_uc011ksu.1_Missense_Mutation_p.S587F|EPHB6_uc003wbs.2_Missense_Mutation_p.S295F|EPHB6_uc003wbt.2_Missense_Mutation_p.S61F|EPHB6_uc003wbu.2_Missense_Mutation_p.S295F|EPHB6_uc003wbv.2_5'UTR	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	587	Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					GAGCTGTCTTCCCAGCTTCCG	0.637													10	13					0	0	1	0	0
TRPV5	56302	broad.mit.edu	37	7	142611874	142611874	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:142611874C>T	uc003wby.1	-	12	1719	c.1455G>A	c.(1453-1455)ATG>ATA	p.M485I		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	485	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					CTCCAAAAATCATCTGCAGGA	0.483													16	18					0	0	1	0	0
ZNF425	155054	broad.mit.edu	37	7	148800986	148800986	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:148800986G>A	uc003wfj.2	-	4	2050	c.1977C>T	c.(1975-1977)GTC>GTT	p.V659V		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	659	C2H2-type 16.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			CCCCGCTGTGGACTCGAATGT	0.537													117	101					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149515812	149515812	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:149515812C>T	uc010lpk.2	+	84	11713	c.11713C>T	c.(11713-11715)CGC>TGC	p.R3905C		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	3905	TSP type-1 16.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CCCTGCATGGCGCAGCCGCAC	0.687													6	35					0	0	1	0	0
GIMAP2	26157	broad.mit.edu	37	7	150390085	150390085	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:150390085G>A	uc003who.2	+	3	799	c.711G>A	c.(709-711)AAG>AAA	p.K237K	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	237						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AAAGAGTAAAGGAATTCAAAC	0.398													17	48					0	0	1	0	0
GIMAP2	26157	broad.mit.edu	37	7	150390223	150390223	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:150390223G>A	uc003who.2	+	3	937	c.849G>A	c.(847-849)TTG>TTA	p.L283L	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	283	Helical; (Potential).					integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TTCTCAGATTGATAATTCTGT	0.353													8	16					0	0	1	0	0
ABP1	26	broad.mit.edu	37	7	150558071	150558071	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:150558071C>T	uc003why.1	+	6	6248	c.2030C>T	c.(2029-2031)CCC>CTC	p.P677L	ABP1_uc003whz.1_Missense_Mutation_p.P677L|ABP1_uc003wia.1_Missense_Mutation_p.P696L	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	677					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	CTGCACATCCCCCACTCAGAG	0.632													21	111					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151874755	151874755	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:151874755G>A	uc003wla.2	-	38	8002	c.7783C>T	c.(7783-7785)CCC>TCC	p.P2595S	MLL3_uc003wkz.2_Missense_Mutation_p.P1656S|MLL3_uc003wky.2_Missense_Mutation_p.P104S	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	2595	Pro-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		TCTGGCCGGGGAATGAAGTTT	0.557			N		medulloblastoma								68	47					0	0	1	0	0
ARHGEF10	9639	broad.mit.edu	37	8	1871973	1871973	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:1871973C>T	uc003wpr.2	+	21	2599	c.2421C>T	c.(2419-2421)TTC>TTT	p.F807F	ARHGEF10_uc003wpq.1_Silent_p.F831F|ARHGEF10_uc003wps.2_Silent_p.F769F|ARHGEF10_uc003wpv.2_Silent_p.F540F|ARHGEF10_uc010lre.2_Silent_p.F487F	NM_014629	NP_055444	O15013	ARHGA_HUMAN	Rho guanine nucleotide exchange factor 10	832					centrosome duplication|myelination in peripheral nervous system|positive regulation of GTP catabolic process|positive regulation of stress fiber assembly|regulation of Rho protein signal transduction|spindle assembly involved in mitosis	centrosome|cytosol|soluble fraction	kinesin binding|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1		Colorectal(14;3.46e-05)|Renal(68;0.000518)|Ovarian(12;0.00409)|Myeloproliferative disorder(644;0.0255)|Hepatocellular(245;0.0834)		COAD - Colon adenocarcinoma(149;1.62e-05)|BRCA - Breast invasive adenocarcinoma(11;1.68e-05)|KIRC - Kidney renal clear cell carcinoma(542;0.00361)|READ - Rectum adenocarcinoma(644;0.0718)		CAGCTGTGTTCAATACGTTCA	0.502													28	57					0	0	1	0	0
MYOM2	9172	broad.mit.edu	37	8	2044098	2044098	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:2044098C>T	uc003wpx.3	+	18	2275	c.2137C>T	c.(2137-2139)CAT>TAT	p.H713Y	MYOM2_uc011kwi.1_Missense_Mutation_p.H138Y	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	713	Fibronectin type-III 4.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		CGTCCCGTCCCATCCTTATGG	0.622													55	102					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2806856	2806856	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:2806856C>T	uc011kwk.1	-	68	10760	c.10370G>A	c.(10369-10371)GGA>GAA	p.G3457E	CSMD1_uc011kwj.1_Missense_Mutation_p.G2771E|CSMD1_uc010lrg.2_Missense_Mutation_p.G1348E	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3457	Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AAAGTCTTTTCCATGAATGTC	0.343													9	10					0	0	1	0	0
CTSB	1508	broad.mit.edu	37	8	11704593	11704593	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:11704593G>A	uc003wum.2	-	10	1085	c.761C>T	c.(760-762)TCT>TTT	p.S254F	CTSB_uc003wul.2_Missense_Mutation_p.S191F|CTSB_uc011kxl.1_Missense_Mutation_p.S175F|CTSB_uc003wun.2_Missense_Mutation_p.S254F|CTSB_uc003wuo.2_Missense_Mutation_p.S254F|CTSB_uc003wup.2_Missense_Mutation_p.S254F|CTSB_uc003wuq.2_Missense_Mutation_p.S254F|CTSB_uc010lsc.2_Missense_Mutation_p.S130F|CTSB_uc003wur.2_Missense_Mutation_p.S254F|CTSB_uc003wus.1_Missense_Mutation_p.S254F|CTSB_uc003wut.1_Missense_Mutation_p.S254F|CTSB_uc003wuu.2_Missense_Mutation_p.S110F	NM_147780	NP_680090	P07858	CATB_HUMAN	cathepsin B preproprotein	254					proteolysis|regulation of apoptosis|regulation of catalytic activity	lysosome|melanosome	cysteine-type endopeptidase activity				0	all_epithelial(15;0.205)		STAD - Stomach adenocarcinoma(15;0.00546)	COAD - Colon adenocarcinoma(149;0.184)		CGAATACACAGAGAAAGCTCC	0.547													20	35					0	0	1	0	0
ATP6V1B2	526	broad.mit.edu	37	8	20069161	20069161	+	Splice_Site	SNP	A	C	C			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:20069161A>C	uc003wzp.2	+	7	818	c.604_splice	c.e7-2	p.I202_splice		NM_001693	NP_001684	P21281	VATB2_HUMAN	vacuolar H+ATPase B2						ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|endomembrane system|Golgi apparatus|melanosome|plasma membrane|proton-transporting V-type ATPase, V1 domain	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism				0				Colorectal(74;0.0535)|COAD - Colon adenocarcinoma(73;0.211)		TTTGTTCATCAGATTGCAGCT	0.328													14	35					0	0	1	0	0
PBK	55872	broad.mit.edu	37	8	27667836	27667836	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:27667836C>T	uc003xgi.2	-	8	1156	c.955G>A	c.(955-957)GAA>AAA	p.E319K	ESCO2_uc010luy.1_Intron|PBK_uc011lap.1_Missense_Mutation_p.E330K	NM_018492	NP_060962	Q96KB5	TOPK_HUMAN	PDZ binding kinase	319	Protein kinase.				mitosis		ATP binding|protein binding|protein serine/threonine kinase activity				0		Ovarian(32;0.000953)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0213)|KIRC - Kidney renal clear cell carcinoma(542;0.101)|Kidney(114;0.121)|Colorectal(74;0.141)		ACATCTGTTTCCAGAGCTTCA	0.373													14	23					0	0	1	0	0
WRN	7486	broad.mit.edu	37	8	30999035	30999035	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:30999035C>T	uc003xio.3	+	25	3845	c.3057C>T	c.(3055-3057)TCC>TCT	p.S1019S	WRN_uc010lvk.2_Silent_p.S486S	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	1019					base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		AGGCTTTTTCCCGTCAGCTGA	0.438			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				26	44					0	0	1	0	0
ADAM18	8749	broad.mit.edu	37	8	39537692	39537692	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:39537692G>A	uc003xni.2	+	16	1768	c.1768G>A	c.(1768-1770)GAT>AAT	p.D590N	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.D566N	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	590	Cys-rich.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			CATGAGATCAGATGGAACAGA	0.358													11	21					0	0	1	0	0
PLAT	5327	broad.mit.edu	37	8	42036493	42036493	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:42036493T>A	uc003xos.2	-	13	1661	c.1452A>T	c.(1450-1452)AGA>AGT	p.R484S	PLAT_uc010lxf.1_Missense_Mutation_p.R401S|PLAT_uc010lxg.1_Missense_Mutation_p.R309S|PLAT_uc003xot.2_Missense_Mutation_p.R438S|PLAT_uc011lcm.1_Missense_Mutation_p.R395S|PLAT_uc011lcn.1_Missense_Mutation_p.R358S	NM_000930	NP_000921	P00750	TPA_HUMAN	plasminogen activator, tissue isoform 1	484	Peptidase S1.				blood coagulation|fibrinolysis|negative regulation of proteolysis|protein modification process|proteolysis	cell surface|cytoplasm|extracellular space	protein binding|serine-type endopeptidase activity			breast(1)|skin(1)	2	all_cancers(6;3.84e-26)|all_epithelial(6;9.61e-28)|all_lung(13;7.2e-13)|Lung NSC(13;1.18e-11)|Ovarian(28;0.00438)|Prostate(17;0.0119)|Colorectal(14;0.0468)|Lung SC(25;0.211)	all_lung(54;0.000378)|Lung NSC(58;0.00145)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;5.23e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00135)|Colorectal(10;0.00165)|Lung(22;0.00467)|COAD - Colon adenocarcinoma(11;0.0171)|LUSC - Lung squamous cell carcinoma(45;0.024)		Alteplase(DB00009)|Aminocaproic Acid(DB00513)|Anistreplase(DB00029)|Iloprost(DB01088)|Reteplase(DB00015)|Tenecteplase(DB00031)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	CGGTGACTGTTCTGTTAAGTA	0.577													55	80					0	0	1	0	0
CHRNB3	1142	broad.mit.edu	37	8	42552633	42552633	+	Translation_Start_Site	SNP	G	A	A	rs4950	by1000genomes	TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:42552633G>A	uc003xpi.1	+	1	72	c.-56G>A	c.(-58--54)CAGTG>CAATG			NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta						synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			CCCTTTTCCAGTGGAAATGCT	0.438													4	34					0	0	1	0	0
OPRK1	4986	broad.mit.edu	37	8	54142271	54142271	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:54142271G>A	uc003xrh.1	-	3	1104	c.729C>T	c.(727-729)ATC>ATT	p.I243I	OPRK1_uc003xri.1_Silent_p.I243I|OPRK1_uc010lyc.1_Silent_p.I154I	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	243	Helical; Name=5; (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	TGTAGCAGACGATGATGATGA	0.542													26	68					0	0	1	0	0
OPRK1	4986	broad.mit.edu	37	8	54147522	54147522	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:54147522G>A	uc003xrh.1	-	2	782	c.407C>T	c.(406-408)TCC>TTC	p.S136F	OPRK1_uc003xri.1_Missense_Mutation_p.S136F|OPRK1_uc010lyc.1_Missense_Mutation_p.S47F	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	136	Helical; Name=3; (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	GTAATCAATGGAAATTACTAT	0.473													47	30					0	0	1	0	0
TRIM55	84675	broad.mit.edu	37	8	67040632	67040632	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:67040632G>A	uc003xvv.2	+	2	488	c.262G>A	c.(262-264)GAT>AAT	p.D88N	TRIM55_uc003xvu.2_Missense_Mutation_p.D88N|TRIM55_uc003xvw.2_Missense_Mutation_p.D88N|TRIM55_uc003xvx.2_Missense_Mutation_p.D88N	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	88						cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			AGTGGTTTTGGATAGACATGG	0.507													84	82					0	0	1	0	0
C8orf34	116328	broad.mit.edu	37	8	69380954	69380954	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:69380954G>A	uc010lyz.2	+	4	426	c.377G>A	c.(376-378)TGG>TAG	p.W126*	C8orf34_uc010lyy.1_Nonsense_Mutation_p.W126*|C8orf34_uc003xyb.2_Nonsense_Mutation_p.W101*	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	126					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			CATCCAAAGTGGAACTGGAGG	0.408													8	31					0	0	1	0	0
Unknown	0	broad.mit.edu	37	8	73150731	73150731	+	Missense_Mutation	SNP	C	T	T	rs138130284		TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:73150731C>T	uc010lzg.2	-	6	708	c.172G>A	c.(172-174)GGA>AGA	p.G58R						Homo sapiens cDNA, FLJ99767.																		GGCTTAGCTCCTTTGTGAAGC	0.338													3	3					0	0	1	0	0
RIPK2	8767	broad.mit.edu	37	8	90784906	90784906	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:90784906C>T	uc003yee.2	+	6	1017	c.703C>T	c.(703-705)CCT>TCT	p.P235S	RIPK2_uc003yef.2_Missense_Mutation_p.P98S	NM_003821	NP_003812	O43353	RIPK2_HUMAN	receptor-interacting serine-threonine kinase 2	235	Protein kinase.				activation of MAPK activity|anti-apoptosis|apoptosis|inflammatory response|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of protein ubiquitination|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	ATP binding|CARD domain binding|LIM domain binding|protein homodimerization activity|protein serine/threonine kinase activity|signal transducer activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.0474)			TGTCACCAATCCTTTGCAGAT	0.318													23	23					0	0	1	0	0
ANGPT1	284	broad.mit.edu	37	8	108315580	108315580	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:108315580C>T	uc003ymn.2	-	5	1292	c.824G>A	c.(823-825)GGA>GAA	p.G275E	ANGPT1_uc011lhv.1_Missense_Mutation_p.G75E|ANGPT1_uc003ymo.2_Missense_Mutation_p.G274E|ANGPT1_uc003ymp.3_Missense_Mutation_p.G74E	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	275					activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			CTCTCTTTTTCCTCCCTTTAG	0.313													9	35					0	0	1	0	0
EIF3E	3646	broad.mit.edu	37	8	109229661	109229661	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:109229661G>A	uc003ymu.2	-	8	779	c.751C>T	c.(751-753)CCA>TCA	p.P251S	EIF3E_uc003ymt.2_Missense_Mutation_p.P202S|EIF3E_uc003ymv.2_Missense_Mutation_p.P158S|EIF3E_uc010mci.1_Missense_Mutation_p.P251S	NM_001568	NP_001559	P60228	EIF3E_HUMAN	eukaryotic translation initiation factor 3,	251					negative regulation of translational initiation|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytosol|eukaryotic translation initiation factor 3 complex|PML body	protein N-terminus binding			ovary(2)|kidney(1)	3			OV - Ovarian serous cystadenocarcinoma(57;6.84e-10)			AGAATGTGTGGACACATTGTC	0.343													4	11					0	0	1	0	0
TMEM74	157753	broad.mit.edu	37	8	109796685	109796685	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:109796685C>T	uc003ymy.1	-	2	748	c.643G>A	c.(643-645)GAG>AAG	p.E215K	TMEM74_uc003ymx.2_Intron	NM_153015	NP_694560	Q96NL1	TMM74_HUMAN	transmembrane protein 74	215					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(57;3.08e-10)			TCCAGGCGCTCCATCTCCCGG	0.622													27	71					0	0	1	0	0
KCNV1	27012	broad.mit.edu	37	8	110984492	110984492	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:110984492G>A	uc003ynr.3	-	2	1328	c.986C>T	c.(985-987)TCC>TTC	p.S329F	KCNV1_uc010mcw.2_Missense_Mutation_p.S329F	NM_014379	NP_055194	Q6PIU1	KCNV1_HUMAN	potassium channel, subfamily V, member 1	329	Helical; Voltage-sensor; Name=Segment S4; (Potential).					voltage-gated potassium channel complex	ion channel inhibitor activity|potassium channel regulator activity|voltage-gated potassium channel activity			lung(1)|kidney(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;5.35e-13)			AATACCTGTGGAATGTCTGCC	0.493													33	33					0	0	1	0	0
KCNV1	27012	broad.mit.edu	37	8	110986246	110986246	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:110986246G>A	uc003ynr.3	-	1	714	c.372C>T	c.(370-372)GTC>GTT	p.V124V	KCNV1_uc010mcw.2_Silent_p.V124V	NM_014379	NP_055194	Q6PIU1	KCNV1_HUMAN	potassium channel, subfamily V, member 1	124	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ion channel inhibitor activity|potassium channel regulator activity|voltage-gated potassium channel activity			lung(1)|kidney(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;5.35e-13)			GCTGCTCCATGACATGCAGGC	0.617													28	22					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113933893	113933893	+	Silent	SNP	A	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:113933893A>T	uc003ynu.2	-	10	1755	c.1596T>A	c.(1594-1596)GTT>GTA	p.V532V	CSMD3_uc003ynt.2_Silent_p.V492V|CSMD3_uc011lhx.1_Silent_p.V428V	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	532	Extracellular (Potential).|Sushi 2.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AAGCAGCAAAAACTTCAGCTA	0.378										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			32	32					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121259890	121259890	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:121259890G>A	uc003yox.2	+	21	2783	c.2518G>A	c.(2518-2520)GAA>AAA	p.E840K	COL14A1_uc003yoy.2_Missense_Mutation_p.E518K	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	840	Fibronectin type-III 7.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			GGTGTCCGAGGAATGGTATAA	0.473													48	39					0	0	1	0	0
MTBP	27085	broad.mit.edu	37	8	121471556	121471556	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:121471556C>T	uc003ypc.1	+	8	894	c.849C>T	c.(847-849)ATC>ATT	p.I283I	MTBP_uc011lie.1_RNA	NM_022045	NP_071328	Q96DY7	MTBP_HUMAN	Mdm2, transformed 3T3 cell double minute 2, p53	283					cell cycle arrest					skin(2)|ovary(1)	3	Lung NSC(37;5.68e-08)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			CCAAAAAGATCATACCATCAA	0.274													4	16					0	0	1	0	0
GSDMC	56169	broad.mit.edu	37	8	130760960	130760960	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:130760960G>A	uc003ysr.2	-	14	2196	c.1314C>T	c.(1312-1314)TTC>TTT	p.F438F		NM_031415	NP_113603	Q9BYG8	GSDMC_HUMAN	melanoma-derived leucine zipper, extra-nuclear	438						mitochondrion				ovary(2)|skin(1)	3						AGGGGTATCTGAAGTTTGGCT	0.532													42	41					0	0	1	0	0
COL22A1	169044	broad.mit.edu	37	8	139635980	139635980	+	Missense_Mutation	SNP	C	G	G			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:139635980C>G	uc003yvd.2	-	52	4213	c.3766G>C	c.(3766-3768)GAG>CAG	p.E1256Q	COL22A1_uc011ljo.1_Missense_Mutation_p.E536Q	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1256	Pro-rich.|Gly-rich.|Collagen-like 12.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			TTTACCGGCTCTCCAGGGGGA	0.368										HNSCC(7;0.00092)			68	212					0	0	1	0	0
DENND3	22898	broad.mit.edu	37	8	142200425	142200425	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:142200425G>A	uc003yvy.2	+	20	3326	c.3048G>A	c.(3046-3048)TGG>TGA	p.W1016*	DENND3_uc010mep.2_Nonsense_Mutation_p.W977*|DENND3_uc003ywa.1_Nonsense_Mutation_p.W66*|DENND3_uc003ywb.2_Nonsense_Mutation_p.W66*	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	1016	WD 1.									ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			TGCTGGTGTGGAATGTGAGCA	0.602													57	52					0	0	1	0	0
LY6D	8581	broad.mit.edu	37	8	143866658	143866658	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:143866658G>A	uc003yxf.1	-	3	442	c.366C>T	c.(364-366)GTC>GTT	p.V122V		NM_003695	NP_003686	Q14210	LY6D_HUMAN	lymphocyte antigen 6 complex, locus D precursor	122					cell adhesion	anchored to membrane|membrane fraction|plasma membrane	protein binding				0	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					GGGCTAAGATGACGGCCAGGA	0.652													17	23					0	0	1	0	0
TOP1MT	116447	broad.mit.edu	37	8	144392362	144392362	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:144392362G>A	uc003yxz.2	-	13	1598	c.1579C>T	c.(1579-1581)CTG>TTG	p.L527L	TOP1MT_uc011lkd.1_Silent_p.L429L|TOP1MT_uc011lke.1_Silent_p.L429L|TOP1MT_uc010mfb.2_Silent_p.L429L|TOP1MT_uc011lkf.1_Silent_p.L322L	NM_052963	NP_443195	Q969P6	TOP1M_HUMAN	mitochondrial topoisomerase I precursor	527					DNA topological change	chromosome|mitochondrial nucleoid	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.86e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)		Irinotecan(DB00762)|Topotecan(DB01030)	AGCTTCTCCAGGAGCCGCCTC	0.642													10	11					0	0	1	0	0
MAPK15	225689	broad.mit.edu	37	8	144802961	144802961	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:144802961G>A	uc003yzj.2	+	9	909	c.868G>A	c.(868-870)GAC>AAC	p.D290N		NM_139021	NP_620590	Q8TD08	MK15_HUMAN	mitogen-activated protein kinase 15	290	Protein kinase.				protein autophosphorylation	extracellular region	ATP binding|MAP kinase activity|SH3 domain binding			lung(2)	2	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			GTTCGCCCCGGACAAGCGGTT	0.682													12	49					0	0	1	0	0
OR13C8	138802	broad.mit.edu	37	9	107331787	107331787	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr9:107331787G>A	uc011lvo.1	+	1	339	c.339G>A	c.(337-339)ATG>ATA	p.M113I		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CGGAGTGCATGATCTTAGGCA	0.502													32	16					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113170218	113170218	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr9:113170218G>A	uc010mtz.2	-	38	7999	c.7662C>T	c.(7660-7662)ATC>ATT	p.I2554I	SVEP1_uc010mty.2_Silent_p.I480I	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2554	Sushi 20.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						AATCACAGTGGATGGCATTGC	0.493													13	8					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113170717	113170717	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr9:113170717G>A	uc010mtz.2	-	38	7500	c.7163C>T	c.(7162-7164)TCC>TTC	p.S2388F	SVEP1_uc010mty.2_Missense_Mutation_p.S314F	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2388	Sushi 17.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						GACACCAAAGGAAATTAGGGG	0.458													10	7					0	0	1	0	0
OR1J2	26740	broad.mit.edu	37	9	125273443	125273443	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr9:125273443C>T	uc004bmj.1	+	4	1218	c.363C>T	c.(361-363)GAC>GAT	p.D121D	OR1J2_uc011lyv.1_Silent_p.D121D	NM_054107	NP_473448	Q8NGS2	OR1J2_HUMAN	olfactory receptor, family 1, subfamily J,	121	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|pancreas(1)|breast(1)	5						TGGCATATGACCGATATGTTG	0.403													27	14					0	0	1	0	0
GAPVD1	26130	broad.mit.edu	37	9	128113084	128113084	+	Missense_Mutation	SNP	C	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr9:128113084C>A	uc010mwx.2	+	23	3882	c.3556C>A	c.(3556-3558)CGC>AGC	p.R1186S	GAPVD1_uc004bpp.2_Missense_Mutation_p.R1195S|GAPVD1_uc004bpq.2_Missense_Mutation_p.R1168S|GAPVD1_uc004bpr.2_Missense_Mutation_p.R1147S|GAPVD1_uc004bps.2_Missense_Mutation_p.R1141S|GAPVD1_uc004bpt.2_Missense_Mutation_p.R201S	NM_015635	NP_056450	Q14C86	GAPD1_HUMAN	GTPase activating protein and VPS9 domains 1	1186					endocytosis|regulation of protein transport|regulation of small GTPase mediated signal transduction|signal transduction	cytosol|endosome|membrane	GTPase activating protein binding|GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						AGAAACAATGCGCTGTGTGTG	0.363													27	14					4.7796e-09	4.85711e-09	1	1	0
ENG	2022	broad.mit.edu	37	9	130605399	130605399	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr9:130605399G>A	uc004bsj.3	-	2	606	c.193C>T	c.(193-195)CAT>TAT	p.H65Y	ENG_uc011mam.1_5'UTR|ENG_uc004bsk.3_Missense_Mutation_p.H65Y	NM_001114753	NP_001108225	P17813	EGLN_HUMAN	endoglin isoform 1 precursor	65	Extracellular (Potential).				artery morphogenesis|BMP signaling pathway|cell adhesion|cell chemotaxis|central nervous system vasculogenesis|chronological cell aging|detection of hypoxia|extracellular matrix disassembly|heart looping|negative regulation of endothelial cell proliferation|negative regulation of nitric-oxide synthase activity|negative regulation of pathway-restricted SMAD protein phosphorylation|negative regulation of protein autophosphorylation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|patterning of blood vessels|positive regulation of BMP signaling pathway|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of systemic arterial blood pressure|positive regulation of transcription from RNA polymerase II promoter|regulation of cell adhesion|regulation of cell proliferation|regulation of transcription, DNA-dependent|regulation of transforming growth factor beta receptor signaling pathway|smooth muscle tissue development|transforming growth factor beta receptor signaling pathway|venous blood vessel morphogenesis|wound healing	cell surface|external side of plasma membrane|extracellular space|membrane fraction	activin binding|galactose binding|glycosaminoglycan binding|protein homodimerization activity|transforming growth factor beta binding|transforming growth factor beta receptor activity|transforming growth factor beta receptor, cytoplasmic mediator activity|transmembrane receptor activity|type I transforming growth factor beta receptor binding|type II transforming growth factor beta receptor binding				0						AAGAGGACATGGACTTCAAGG	0.632									Juvenile_Polyposis|Hereditary_Hemorrhagic_Telangiectasia				67	48					0	0	1	0	0
PTGES2	80142	broad.mit.edu	37	9	130885304	130885304	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr9:130885304G>A	uc004bti.2	-	5	1274	c.796C>T	c.(796-798)CGC>TGC	p.R266C	PTGES2_uc004btj.2_RNA|PTGES2_uc004btk.2_Missense_Mutation_p.R75C|PTGES2_uc004btl.2_Missense_Mutation_p.R75C|PTGES2_uc004btm.2_RNA	NM_025072	NP_079348	Q9H7Z7	PGES2_HUMAN	prostaglandin E synthase 2	266	GST C-terminal.|Cytoplasmic (Potential).				cell redox homeostasis|prostaglandin biosynthetic process	Golgi membrane|integral to membrane|mitochondrion|perinuclear region of cytoplasm	electron carrier activity|prostaglandin-E synthase activity|protein binding|protein disulfide oxidoreductase activity				0						TTGCCCTCGCGGACAATGTAG	0.627													38	22					0	0	1	0	0
DDX31	64794	broad.mit.edu	37	9	135522331	135522331	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr9:135522331G>A	uc004cbq.1	-	12	1549	c.1397C>T	c.(1396-1398)CCA>CTA	p.P466L	DDX31_uc010mzu.1_Missense_Mutation_p.P466L|DDX31_uc004cbr.1_Missense_Mutation_p.P466L	NM_022779	NP_073616	Q9H8H2	DDX31_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 31	466						nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(145;2.67e-06)|Epithelial(140;7.61e-05)		GCCAGCTGGTGGAGGACAGAC	0.532													23	18					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3235575	3235575	+	Silent	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chrX:3235575G>A	uc004crg.3	-	6	6304	c.6147C>T	c.(6145-6147)ATC>ATT	p.I2049I		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2049	Ig-like C2-type 5.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TCTCCTGGTGGATAACGGGGG	0.662													11	5					0	0	1	0	0
DGKK	139189	broad.mit.edu	37	X	50125577	50125577	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chrX:50125577C>T	uc010njr.1	-	18	2634	c.2574G>A	c.(2572-2574)ATG>ATA	p.M858I		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	858					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					AGTAGTTGTTCATGACACATT	0.403													11	5					0	0	1	0	0
FAM120C	54954	broad.mit.edu	37	X	54099713	54099713	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chrX:54099713G>A	uc004dsz.3	-	16	3127	c.3044C>T	c.(3043-3045)TCA>TTA	p.S1015L	FAM120C_uc011moh.1_Nonsense_Mutation_p.Q878*	NM_017848	NP_060318	Q9NX05	F120C_HUMAN	hypothetical protein LOC54954	1015										ovary(1)|central_nervous_system(1)	2						AACTCCATCTGAAGAGCCCTG	0.473													23	4					0	0	1	0	0
KIAA1210	57481	broad.mit.edu	37	X	118222216	118222216	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chrX:118222216G>A	uc004era.3	-	11	2977	c.2977C>T	c.(2977-2979)CCT>TCT	p.P993S		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	993										ovary(4)|skin(1)	5						TGAACTTTAGGATTCATCAAG	0.453													36	10					0	0	1	0	0
OR13H1	347468	broad.mit.edu	37	X	130678886	130678886	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chrX:130678886T>C	uc011muw.1	+	1	839	c.839T>C	c.(838-840)TTG>TCG	p.L280S	IGSF1_uc004ewf.2_Intron	NM_001004486	NP_001004486	Q8NG92	O13H1_HUMAN	olfactory receptor, family 13, subfamily H,	280	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Acute lymphoblastic leukemia(192;0.000636)					TATGGAGCTTTGACACCCATG	0.413													38	15					0	0	1	0	0
GPR50	9248	broad.mit.edu	37	X	150348705	150348705	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chrX:150348705C>T	uc010ntg.1	+	2	785	c.650C>T	c.(649-651)GCG>GTG	p.A217V	uc004fes.1_5'Flank|GPR50_uc011myc.1_Missense_Mutation_p.A217V	NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	217	Cytoplasmic (Potential).				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					AAAGTGCTGGCGGCCCGTGAC	0.527													62	16					0	0	1	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303869	151303869	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chrX:151303869G>A	uc004ffk.2	-	5	632	c.224C>T	c.(223-225)TCT>TTT	p.S75F	MAGEA10_uc004ffl.2_Missense_Mutation_p.S75F	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	75											0	Acute lymphoblastic leukemia(192;6.56e-05)					ATCATCAGCAGAAACCTCCTC	0.393													59	18					0	0	1	0	0
MAGEA12	4111	broad.mit.edu	37	X	151899978	151899978	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chrX:151899978G>A	uc010ntp.2	-	3	1177	c.823C>T	c.(823-825)CCA>TCA	p.P275S	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.P275S	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	275	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AGGGCCCTTGGACCCCACAGG	0.552													100	37					0	0	1	0	0
PNMA3	29944	broad.mit.edu	37	X	152226589	152226589	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chrX:152226589C>T	uc004fhc.2	+	2	1513	c.1177C>T	c.(1177-1179)CGA>TGA	p.R393*	PNMA5_uc004fha.3_5'Flank|PNMA3_uc004fhd.2_5'Flank	NM_013364	NP_037496	Q9UL41	PNMA3_HUMAN	paraneoplastic cancer-testis-brain antigen	393	Arg-rich.				apoptosis	nucleolus	nucleic acid binding|zinc ion binding			skin(2)|large_intestine(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGGCCAACACCGAAGGGGTGG	0.607													27	13					0	0	1	0	0
SSR4	6748	broad.mit.edu	37	X	153062924	153062924	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chrX:153062924C>T	uc004fiw.2	+	3	247	c.198C>T	c.(196-198)CTC>CTT	p.L66L	IDH3G_uc004fip.2_5'Flank|IDH3G_uc004fiq.2_5'Flank|IDH3G_uc010num.2_5'Flank|IDH3G_uc004fir.2_5'Flank|IDH3G_uc004fit.1_5'Flank|IDH3G_uc004fis.2_5'Flank|SSR4_uc004fiv.2_Silent_p.L77L	NM_006280	NP_006271	P51571	SSRD_HUMAN	signal sequence receptor, delta precursor	66	Lumenal (Potential).				intracellular protein transport	integral to membrane|Sec61 translocon complex	calcium ion binding|protein binding				0	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					ACATGGCTCTCTATGCTGACG	0.612													29	4					0	0	1	0	0
IL9R	3581	broad.mit.edu	37	X	155239594	155239594	+	Silent	SNP	C	T	T			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chrX:155239594C>T	uc004fnv.1	+	9	1265	c.1086C>T	c.(1084-1086)GGC>GGT	p.G362G	IL9R_uc004fnu.1_3'UTR	NM_002186	NP_002177	Q01113	IL9R_HUMAN	interleukin 9 receptor precursor	362	Cytoplasmic (Potential).				cell proliferation	extracellular space|integral to plasma membrane	interleukin-9 receptor activity				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TCACTTGTGGCCCAGCGCGTC	0.672													34	40					0	0	1	0	0
NBPF9	400818	broad.mit.edu	37	1	144615246	144615247	+	Splice_Site	INS	-	AG	AG			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr1:144615246_144615247insAG	uc009wig.1	+	3	190	c.114_splice	c.e3+2	p.L38_splice	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Intron|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_5'UTR|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_5'UTR|NBPF9_uc010oyg.1_Frame_Shift_Ins_p.K39fs|NBPF9_uc009wii.1_5'UTR|NBPF9_uc009wif.1_RNA|C1orf152_uc001elf.3_5'Flank	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818							cytoplasm					0						GTAAACCTCAAAGAGATGTTTT	0.470													7	22	---	---	---	---					
LOC653544	653544	broad.mit.edu	37	10	135491036	135491036	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr10:135491036delG	uc010qvi.1	+	1	758	c.647delG	c.(646-648)AGGfs	p.R216fs		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	216						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CAGGGTGGCAGGGCGCCCGCG	0.736													10	269	---	---	---	---					
EP400	57634	broad.mit.edu	37	12	132445250	132445251	+	Frame_Shift_Ins	INS	-	G	G			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr12:132445250_132445251insG	uc001ujn.2	+	1	121_122	c.86_87insG	c.(85-87)CCGfs	p.P29fs	EP400_uc001ujl.2_Frame_Shift_Ins_p.P29fs|EP400_uc001ujm.2_Frame_Shift_Ins_p.P29fs|EP400_uc001ujj.1_Frame_Shift_Ins_p.P29fs|EP400_uc001ujk.2_Frame_Shift_Ins_p.P29fs	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	29					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		GAGGAGCAGCCGGCCCACCCCA	0.653													2	4	---	---	---	---					
SLC35B1	10237	broad.mit.edu	37	17	47782504	47782506	+	In_Frame_Del	DEL	GCC	-	-			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr17:47782504_47782506delGCC	uc002iph.1	-	5	595_597	c.508_510delGGC	c.(508-510)GGCdel	p.G170del	SLC35B1_uc002ipi.1_In_Frame_Del_p.G103del|SLC35B1_uc002ipj.1_In_Frame_Del_p.G46del|SLC35B1_uc010wly.1_In_Frame_Del_p.G170del	NM_005827	NP_005818	P78383	S35B1_HUMAN	solute carrier family 35, member B1	170	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	UDP-galactose transmembrane transporter activity				0						GCTCTCCATAGCCGACTGTGTGT	0.493													24	76	---	---	---	---					
NRIP1	8204	broad.mit.edu	37	21	16337660	16337660	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr21:16337660delG	uc002yjx.2	-	4	3452	c.2854delC	c.(2854-2856)CACfs	p.H952fs		NM_003489	NP_003480	P48552	NRIP1_HUMAN	nuclear receptor interacting protein 1	952					androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		androgen receptor binding|estrogen receptor binding|glucocorticoid receptor binding|transcription coactivator activity|transcription corepressor activity				0				Epithelial(23;1.19e-05)|all cancers(11;4.64e-05)|COAD - Colon adenocarcinoma(22;0.000232)|Colorectal(24;0.0006)|OV - Ovarian serous cystadenocarcinoma(11;0.00418)|Lung(58;0.199)|LUSC - Lung squamous cell carcinoma(23;0.24)		TTACTTCTGTGCGGGGACAAA	0.418													27	65	---	---	---	---					
SDHAP1	255812	broad.mit.edu	37	3	195701310	195701311	+	Frame_Shift_Ins	INS	-	AA	AA			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr3:195701310_195701311insAA	uc011btq.1	-	8	1182_1183	c.553_554insTT	c.(553-555)TGGfs	p.W185fs	SDHAP1_uc003fvx.3_RNA|SDHAP1_uc011btp.1_RNA					SubName: Full=cDNA FLJ56858, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						CATGCCTGACCAGACAACCAGG	0.574													7	61	---	---	---	---					
TULP1	7287	broad.mit.edu	37	6	35478775	35478777	+	In_Frame_Del	DEL	TCC	-	-			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr6:35478775_35478777delTCC	uc003okv.3	-	5	372_374	c.360_362delGGA	c.(358-363)GAGGAA>GAA	p.120_121EE>E	TULP1_uc003okw.3_In_Frame_Del_p.67_68EE>E	NM_003322	NP_003313	O00294	TULP1_HUMAN	tubby like protein 1	120_121	Poly-Glu.		Missing (in RP14).		dendrite development|eye photoreceptor cell development|phagocytosis|photoreceptor cell maintenance|positive regulation of phagocytosis	cell junction|cytoplasm|extracellular region|photoreceptor inner segment|photoreceptor outer segment|synapse	actin filament binding|phosphatidylinositol-4,5-bisphosphate binding			ovary(2)|central_nervous_system(1)	3						gtcctcctcttcctcctcctcct	0.389													7	152	---	---	---	---					
RELN	5649	broad.mit.edu	37	7	103205777	103205777	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr7:103205777delC	uc003vca.2	-	34	5318	c.5158delG	c.(5158-5160)GAAfs	p.E1720fs	RELN_uc010liz.2_Frame_Shift_Del_p.E1720fs	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1720					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TGGAATCTTTCCGAGGTGTAA	0.468													19	46	---	---	---	---					
ZC3H3	23144	broad.mit.edu	37	8	144522386	144522387	+	In_Frame_Ins	INS	-	GAG	GAG	rs35759992	byFrequency	TCGA-EB-A3XF-01A-31D-A23B-08	TCGA-EB-A3XF-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	44f65d92-3e20-4028-8695-9bb3bdbe5a89	9635878b-a30e-4308-844c-57a521d8b766	g.chr8:144522386_144522387insGAG	uc003yyd.2	-	11	2668_2669	c.2639_2640insCTC	c.(2638-2640)TCA>TCCTCA	p.880_880S>SS		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3	880	Poly-Ser.				mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding			skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			CGggaggggatgaggaggagga	0.545													7	25	---	---	---	---					
