Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CLSTN1	22883	broad.mit.edu	37	1	9801249	9801249	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:9801249C>T	uc001aqh.2	-	10	2181	c.1422G>A	c.(1420-1422)GTG>GTA	p.V474V	CLSTN1_uc001aqi.2_Silent_p.V464V|CLSTN1_uc010oag.1_Silent_p.V474V	NM_001009566	NP_001009566	O94985	CSTN1_HUMAN	calsyntenin 1 isoform 1	474	Extracellular (Potential).				homophilic cell adhesion	cell junction|cell projection|endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nucleus|postsynaptic membrane	calcium ion binding			skin(1)	1	all_lung(157;0.222)	all_lung(284;4.03e-05)|Lung NSC(185;6.93e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|Colorectal(212;8.36e-08)|COAD - Colon adenocarcinoma(227;1.93e-05)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(304;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|STAD - Stomach adenocarcinoma(132;0.00644)|READ - Rectum adenocarcinoma(331;0.0419)		ACGTGCCATCCACATAGAGAG	0.542													17	50					0	0	1	0	0
PRDM2	7799	broad.mit.edu	37	1	14106678	14106678	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:14106678C>T	uc001avi.2	+	8	3244	c.2388C>T	c.(2386-2388)AGC>AGT	p.S796S	PRDM2_uc001avg.2_Intron|PRDM2_uc001avh.2_Silent_p.S796S|PRDM2_uc001avj.2_Intron|PRDM2_uc009vod.1_Silent_p.S553S|PRDM2_uc001avk.2_Silent_p.S595S|PRDM2_uc009voe.2_Intron|PRDM2_uc009vof.2_Intron	NM_012231	NP_036363	Q13029	PRDM2_HUMAN	retinoblastoma protein-binding zinc finger	796						Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		AAACTGTGAGCCCTCCATGCT	0.473													25	38					0	0	1	0	0
DNAJC16	23341	broad.mit.edu	37	1	15886035	15886035	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:15886035G>A	uc001aws.2	+	8	1158	c.1038G>A	c.(1036-1038)AAG>AAA	p.K346K	DNAJC16_uc001awr.1_Silent_p.K346K|DNAJC16_uc001awt.2_Silent_p.K34K|DNAJC16_uc001awu.2_RNA	NM_015291	NP_056106	Q9Y2G8	DJC16_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 16	346	Cytoplasmic (Potential).				cell redox homeostasis|protein folding	integral to membrane	heat shock protein binding|unfolded protein binding			urinary_tract(1)|lung(1)|kidney(1)	3		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00173)|all_lung(284;0.00459)|Lung NSC(340;0.00499)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.18e-07)|COAD - Colon adenocarcinoma(227;4.5e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00774)|READ - Rectum adenocarcinoma(331;0.0657)		GAGGTATGAAGAAGCAAATCA	0.423													16	131					0	0	1	0	0
SPEN	23013	broad.mit.edu	37	1	16261343	16261343	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:16261343G>A	uc001axk.1	+	11	8812	c.8608G>A	c.(8608-8610)GGC>AGC	p.G2870S	SPEN_uc010obp.1_Missense_Mutation_p.G2829S	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	2870	Interaction with RBPSUH (By similarity).				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		TCCATCCAAAGGCCCTCAAGC	0.542													9	41					0	0	1	0	0
ATP13A2	23400	broad.mit.edu	37	1	17331219	17331219	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:17331219G>A	uc001baa.2	-	5	635	c.445C>T	c.(445-447)CAC>TAC	p.H149Y	ATP13A2_uc001bab.2_Missense_Mutation_p.H149Y|ATP13A2_uc001bac.2_Missense_Mutation_p.H149Y	NM_022089	NP_071372	Q9NQ11	AT132_HUMAN	ATPase type 13A2 isoform 1	149	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;0.000147)|Breast(348;0.00104)|Renal(390;0.00145)|Lung NSC(340;0.00566)|all_lung(284;0.00797)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|COAD - Colon adenocarcinoma(227;1.11e-05)|BRCA - Breast invasive adenocarcinoma(304;1.99e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.182)		TCGCTCTTGTGGAGCTGGGCC	0.478													13	113					0	0	1	0	0
DDOST	1650	broad.mit.edu	37	1	20979418	20979419	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:20979418_20979419GG>AA	uc001bdo.1	-	9	1182_1183	c.1039_1040CC>TT	c.(1039-1041)CCC>TTC	p.P347F	DDOST_uc009vpw.1_Missense_Mutation_p.P347F|DDOST_uc010odd.1_Missense_Mutation_p.P146F|DDOST_uc010ode.1_Missense_Mutation_p.P310F	NM_005216	NP_005207	P39656	OST48_HUMAN	dolichyl-diphosphooligosaccharide-protein	347	Lumenal (Potential).				innate immune response|post-translational protein modification|response to cytokine stimulus|T cell activation	integral to membrane|microsome|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding				0		all_lung(284;2.98e-05)|Lung NSC(340;3.25e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000147)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|COAD - Colon adenocarcinoma(152;1.17e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000141)|Kidney(64;0.000177)|GBM - Glioblastoma multiforme(114;0.00046)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GCCATCAAAGGGGACCCATTTG	0.515													30	45					0	0	1	0	0
MAN1C1	57134	broad.mit.edu	37	1	26073252	26073252	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:26073252G>A	uc001bkm.2	+	3	1061	c.731G>A	c.(730-732)GGA>GAA	p.G244E	MAN1C1_uc009vry.1_Missense_Mutation_p.G64E	NM_020379	NP_065112	Q9NR34	MA1C1_HUMAN	mannosidase, alpha, class 1C, member 1	244	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(1)	1		Colorectal(325;3.78e-05)|Lung NSC(340;0.000181)|all_lung(284;0.000245)|Renal(390;0.000714)|Ovarian(437;0.00159)|Breast(348;0.0156)|Myeloproliferative disorder(586;0.0257)|all_neural(195;0.0515)|Esophageal squamous(538;0.232)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0574)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.15e-07)|COAD - Colon adenocarcinoma(152;4.31e-06)|STAD - Stomach adenocarcinoma(196;0.00125)|BRCA - Breast invasive adenocarcinoma(304;0.00141)|KIRC - Kidney renal clear cell carcinoma(1967;0.00146)|GBM - Glioblastoma multiforme(114;0.0149)|READ - Rectum adenocarcinoma(331;0.0803)		GCCTGGGTGGGAGAGAGCTTC	0.637													11	18					0	0	1	0	0
C1orf172	126695	broad.mit.edu	37	1	27278461	27278461	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:27278461G>A	uc001bni.1	-	2	500	c.411C>T	c.(409-411)AGC>AGT	p.S137S		NM_152365	NP_689578	Q8NAX2	CA172_HUMAN	hypothetical protein LOC126695	137										large_intestine(1)|ovary(1)	2		all_cancers(24;1.29e-21)|all_epithelial(13;2.35e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Breast(348;0.00131)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;3.37e-51)|OV - Ovarian serous cystadenocarcinoma(117;2.22e-29)|Colorectal(126;5.31e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000272)|STAD - Stomach adenocarcinoma(196;0.000588)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|READ - Rectum adenocarcinoma(331;0.0419)		CACGATCAGGGCTGGGGGGCA	0.637													5	36					0	0	1	0	0
KIAA1522	57648	broad.mit.edu	37	1	33236440	33236440	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:33236440C>T	uc001bvv.2	+	6	1619	c.1483C>T	c.(1483-1485)CCA>TCA	p.P495S	KIAA1522_uc001bvu.1_Missense_Mutation_p.P554S|KIAA1522_uc010ohm.1_Missense_Mutation_p.P506S|KIAA1522_uc010ohn.1_Intron	NM_020888	NP_065939	Q9P206	K1522_HUMAN	hypothetical protein LOC57648	495	Pro-rich.										0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				TCCACCCAACCCAGCCAACAG	0.677													3	15					0	0	1	0	0
ZSCAN20	7579	broad.mit.edu	37	1	33960280	33960280	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:33960280C>T	uc001bxj.3	+	8	2503	c.2336C>T	c.(2335-2337)TCT>TTT	p.S779F	ZSCAN20_uc009vui.2_Missense_Mutation_p.S778F	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	779	C2H2-type 3.				viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				AGTGACCATTCTAATCTCATC	0.428													18	110					0	0	1	0	0
DLGAP3	58512	broad.mit.edu	37	1	35334325	35334325	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:35334325G>A	uc001byc.2	-	7	2366	c.2366C>T	c.(2365-2367)TCC>TTC	p.S789F		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	789					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				TGGGCAGGGGGATGCGCGGCC	0.572													28	24					0	0	1	0	0
GRIK3	2899	broad.mit.edu	37	1	37346324	37346324	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:37346324G>A	uc001caz.2	-	3	596	c.461C>T	c.(460-462)CCC>CTC	p.P154L	GRIK3_uc001cba.1_Missense_Mutation_p.P154L	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	154	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	GGCGTAGTCGGGGTAGAGGTT	0.607													19	135					0	0	1	0	0
COL9A2	1298	broad.mit.edu	37	1	40777365	40777365	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:40777365G>A	uc001cfh.1	-	9	510	c.440C>T	c.(439-441)CCA>CTA	p.P147L	COL9A2_uc001cfi.1_5'UTR	NM_001852	NP_001843	Q14055	CO9A2_HUMAN	alpha 2 type IX collagen precursor	147	Triple-helical region 4 (COL4).				axon guidance|skeletal system development	collagen type IX				ovary(2)	2	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;2.08e-17)			GGGCCCCGATGGTCCATCTGG	0.612													9	86					0	0	1	0	0
CCDC30	728621	broad.mit.edu	37	1	43002250	43002250	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:43002250A>G	uc009vwk.1	+	2	205	c.95A>G	c.(94-96)AAG>AGG	p.K32R	CCDC30_uc001chm.2_5'UTR|CCDC30_uc001chn.2_Intron|CCDC30_uc010oju.1_RNA|CCDC30_uc001chp.2_Missense_Mutation_p.K32R	NM_001080850	NP_001074319	Q5VVM6	CCD30_HUMAN	coiled-coil domain containing 30	32	Potential.										0						ACTGCAGAGAAGGCCTTGAAA	0.363													12	119					0	0	1	0	0
CYP4A11	1579	broad.mit.edu	37	1	47398436	47398436	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:47398436G>A	uc001cqp.3	-	11	1412	c.1361C>T	c.(1360-1362)TCA>TTA	p.S454L	CYP4A11_uc001cqq.2_Missense_Mutation_p.S454L	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	454					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	GTCTCACCTTGATCCTCCTGA	0.512													54	310					0	0	1	0	0
PPAP2B	8613	broad.mit.edu	37	1	56990214	56990214	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:56990214C>T	uc001cyj.1	-	4	811	c.310G>A	c.(310-312)GAA>AAA	p.E104K		NM_177414	NP_803133	O14495	LPP3_HUMAN	phosphatidic acid phosphatase type 2B	104	Helical; (Potential).				canonical Wnt receptor signaling pathway involved in positive regulation of cell-cell adhesion|canonical Wnt receptor signaling pathway involved in positive regulation of endothelial cell migration|canonical Wnt receptor signaling pathway involved in positive regulation of wound healing|germ cell migration|homotypic cell-cell adhesion|negative regulation of protein phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|sphingolipid metabolic process	adherens junction|Golgi apparatus|integral to membrane	phosphatidate phosphatase activity|phosphoprotein phosphatase activity|protein binding|sphingosine-1-phosphate phosphatase activity				0						CGGTAGAATTCCCCCGTGATG	0.473													14	37					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75102049	75102049	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:75102049G>A	uc001dgg.2	-	6	737	c.518C>T	c.(517-519)CCT>CTT	p.P173L	C1orf173_uc001dgi.3_5'Flank	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	173										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TTCTACTGCAGGATTACTGGG	0.418													30	242					0	0	1	0	0
MCOLN2	255231	broad.mit.edu	37	1	85424379	85424379	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:85424379G>A	uc001dkm.2	-	3	485	c.244C>T	c.(244-246)CGT>TGT	p.R82C	MCOLN2_uc001dkn.2_RNA	NM_153259	NP_694991	Q8IZK6	MCLN2_HUMAN	mucolipin 2	82						integral to membrane	ion channel activity			ovary(3)|upper_aerodigestive_tract(1)	4				all cancers(265;0.0111)|Epithelial(280;0.0263)|OV - Ovarian serous cystadenocarcinoma(397;0.217)		AAACCAAAACGAACAAGCTAA	0.333													4	29					0	0	1	0	0
VCAM1	7412	broad.mit.edu	37	1	101196829	101196829	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:101196829T>C	uc001dti.2	+	6	1400	c.1280T>C	c.(1279-1281)GTT>GCT	p.V427A	VCAM1_uc001dtj.2_Missense_Mutation_p.V335A|VCAM1_uc010ouj.1_Missense_Mutation_p.V365A	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	427	Ig-like C2-type 5.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	AGCTGCAAGGTTCCTAGCGTG	0.463													11	63					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103380274	103380274	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:103380274G>A	uc001dul.2	-	51	4228	c.3910C>T	c.(3910-3912)CCT>TCT	p.P1304S	COL11A1_uc001duk.2_Missense_Mutation_p.P500S|COL11A1_uc001dum.2_Missense_Mutation_p.P1316S|COL11A1_uc001dun.2_Missense_Mutation_p.P1265S|COL11A1_uc009weh.2_Missense_Mutation_p.P1188S	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1304	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TTACCCTTAGGGCCATCATCA	0.512													3	25					0	0	1	0	0
KIAA1324	57535	broad.mit.edu	37	1	109735360	109735360	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:109735360C>T	uc001dwq.2	+	15	1947	c.1811C>T	c.(1810-1812)TCT>TTT	p.S604F	KIAA1324_uc009wex.1_Missense_Mutation_p.S554F|KIAA1324_uc009wey.2_Missense_Mutation_p.S517F|KIAA1324_uc010ovg.1_Missense_Mutation_p.S502F|KIAA1324_uc001dwr.2_Missense_Mutation_p.S254F	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor	604	Extracellular (Potential).				macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		TCCTGCACCTCTTGTCCTGCT	0.527													40	271					0	0	1	0	0
WNT2B	7482	broad.mit.edu	37	1	113063098	113063099	+	Missense_Mutation	DNP	CC	TT	TT	rs145437043		TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:113063098_113063099CC>TT	uc001ecb.2	+	5	1658_1659	c.1143_1144CC>TT	c.(1141-1146)GCCCCC>GCTTCC	p.P382S	WNT2B_uc001eca.2_Missense_Mutation_p.P363S|WNT2B_uc009wgg.2_Missense_Mutation_p.P290S	NM_024494	NP_078613	Q93097	WNT2B_HUMAN	wingless-type MMTV integration site family,	382					chondrocyte differentiation|cornea development in camera-type eye|dorsal/ventral axis specification|forebrain regionalization|hemopoietic stem cell proliferation|iris morphogenesis|lens development in camera-type eye|lung induction|male gonad development|neuron differentiation|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled-2 binding|signal transducer activity			ovary(2)|breast(2)|skin(1)	5	Lung SC(450;0.246)	all_cancers(81;7.31e-07)|all_epithelial(167;4.59e-06)|all_lung(203;2.56e-05)|Lung NSC(69;4.38e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CTTGCAAAGCCCCCAAGAAGGC	0.505													8	20					0	0	1	0	0
RSBN1	54665	broad.mit.edu	37	1	114354840	114354840	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:114354840C>T	uc001edq.2	-	1	231	c.195G>A	c.(193-195)CAG>CAA	p.Q65Q	RSBN1_uc001edr.2_RNA	NM_018364	NP_060834	Q5VWQ0	RSBN1_HUMAN	round spermatid basic protein 1	65						nucleus				ovary(1)	1	Lung SC(450;0.184)	all_cancers(81;3.78e-08)|all_epithelial(167;5.56e-08)|all_lung(203;6.97e-06)|Lung NSC(69;1.18e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCGGCTCCTCCTGCGCCGCCA	0.657													20	163					0	0	1	0	0
DENND2C	163259	broad.mit.edu	37	1	115078973	115078973	+	RNA	SNP	C	T	T	rs148880169	by1000genomes	TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:115078973C>T	uc001eez.2	-	29		c.4670G>A				NM_198459		Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C											skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACCTGAGATCCGAACTGGGCT	0.522													9	41					0	0	1	0	0
DENND2C	163259	broad.mit.edu	37	1	115168201	115168201	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:115168201C>T	uc001efd.1	-	4	1107	c.405G>A	c.(403-405)GAG>GAA	p.E135E	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Silent_p.E135E	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	135										skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTAATGAAGTCTCTGGATCTA	0.363													10	50					0	0	1	0	0
HMGCS2	3158	broad.mit.edu	37	1	120295927	120295927	+	Nonsense_Mutation	SNP	G	A	A	rs137852637		TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:120295927G>A	uc001eid.2	-	7	1321	c.1270C>T	c.(1270-1272)CGA>TGA	p.R424*	HMGCS2_uc010oxj.1_Nonsense_Mutation_p.R382*|HMGCS2_uc001eie.2_Nonsense_Mutation_p.R332*	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	424					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		TGGGATACTCGAAATGAAAAG	0.478													14	15					0	0	1	0	0
HMGCS2	3158	broad.mit.edu	37	1	120307048	120307048	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:120307048G>A	uc001eid.2	-	2	357	c.306C>T	c.(304-306)ATC>ATT	p.I102I	HMGCS2_uc010oxj.1_Silent_p.I102I|HMGCS2_uc001eie.2_Silent_p.I10I	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	102					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		ACAGGGAGTTGATGTCCTCTT	0.547													63	98					0	0	1	0	0
ADAM30	11085	broad.mit.edu	37	1	120437169	120437169	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:120437169G>A	uc001eij.2	-	1	1945	c.1791C>T	c.(1789-1791)CCC>CCT	p.P597P		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	597	Cys-rich.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		GTATTCCCATGGGTTTCATGG	0.443													16	127					0	0	1	0	0
GPR89A	653519	broad.mit.edu	37	1	145811903	145811903	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:145811903G>A	uc001eot.2	-	4	480	c.306C>T	c.(304-306)ATC>ATT	p.I102I	NBPF10_uc001emp.3_Intron|GPR89A_uc001eor.2_Silent_p.I26I|GPR89A_uc010ozb.1_Silent_p.I77I|GPR89A_uc001eos.2_5'UTR|GPR89A_uc010ozc.1_Silent_p.I77I|GPR89A_uc010ozd.1_Silent_p.I49I|GPR89A_uc010oze.1_Silent_p.I102I	NM_001097612	NP_001091081	B7ZAQ6	GPHRA_HUMAN	G protein-coupled receptor 89A isoform 1	102					intracellular pH reduction|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein transport	Golgi cisterna membrane|Golgi-associated vesicle membrane|integral to membrane	signal transducer activity|voltage-gated anion channel activity				0	all_hematologic(18;0.00473)|Acute lymphoblastic leukemia(18;0.0786)		KIRC - Kidney renal clear cell carcinoma(6;0.0764)|Kidney(552;0.118)|Colorectal(543;0.229)			TACGTAGTCGGATATTGCTCA	0.373													35	188					0	0	1	0	0
NBPF15	284565	broad.mit.edu	37	1	148594470	148594470	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:148594470C>T	uc001esc.2	+	19	2332	c.1843C>T	c.(1843-1845)CCG>TCG	p.P615S		NM_173638	NP_775909	Q8N660	NBPFF_HUMAN	hypothetical protein LOC284565	615	NBPF 6.					cytoplasm					0	all_hematologic(923;0.032)					TTATTCGACTCCGTCAATGTA	0.448													326	344					0	0	1	0	0
RPRD2	23248	broad.mit.edu	37	1	150443860	150443860	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:150443860C>T	uc009wlr.2	+	11	2637	c.2436C>T	c.(2434-2436)TCC>TCT	p.S812S	RPRD2_uc010pcc.1_Silent_p.S786S|RPRD2_uc001eup.3_Silent_p.S786S	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	812	Ser-rich.						protein binding			ovary(1)	1						GACCATCTTCCCTGATGGACT	0.478													14	44					0	0	1	0	0
RPRD2	23248	broad.mit.edu	37	1	150445153	150445153	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:150445153C>T	uc009wlr.2	+	11	3930	c.3729C>T	c.(3727-3729)CCC>CCT	p.P1243P	RPRD2_uc010pcc.1_3'UTR|RPRD2_uc001eup.3_Silent_p.P1217P	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	1243	Pro-rich.						protein binding			ovary(1)	1						TTTCGAACCCCTTCACAAAGG	0.597													10	203					0	0	1	0	0
SETDB1	9869	broad.mit.edu	37	1	150902515	150902515	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:150902515C>T	uc001evu.2	+	3	523	c.333C>T	c.(331-333)AGC>AGT	p.S111S	SETDB1_uc009wmf.2_Silent_p.S111S|SETDB1_uc001evv.2_Silent_p.S111S|SETDB1_uc001evw.3_Silent_p.S111S|SETDB1_uc009wmg.1_Silent_p.S111S	NM_001145415	NP_001138887	Q15047	SETB1_HUMAN	SET domain, bifurcated 1 isoform 1	111					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|Golgi apparatus|nucleus|plasma membrane	DNA binding|histone-lysine N-methyltransferase activity|protein binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|BRCA - Breast invasive adenocarcinoma(12;0.0152)|LUSC - Lung squamous cell carcinoma(543;0.211)			GGGACAGTAGCTCTGAGGACG	0.438													67	80					0	0	1	0	0
RPTN	126638	broad.mit.edu	37	1	152129231	152129231	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:152129231C>T	uc001ezs.1	-	3	409	c.344G>A	c.(343-345)GGA>GAA	p.G115E		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	115	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						GCCTGTGTTTCCTGGGAACTT	0.527													109	425					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152279738	152279738	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:152279738C>T	uc001ezu.1	-	3	7660	c.7624G>A	c.(7624-7626)GAC>AAC	p.D2542N		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2542	Ser-rich.|Filaggrin 15.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCAGAGCTGTCGGCCCGAGAG	0.582									Ichthyosis				137	637					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152280647	152280647	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:152280647G>A	uc001ezu.1	-	3	6751	c.6715C>T	c.(6715-6717)CGG>TGG	p.R2239W		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2239	Ser-rich.|Filaggrin 13.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGGATCCCCGGGGCCTGCTT	0.577									Ichthyosis				41	596					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152328601	152328601	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:152328601G>A	uc001ezw.3	-	3	1734	c.1661C>T	c.(1660-1662)TCT>TTT	p.S554F	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	554	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCCATAGCCAGATGATTGACT	0.498													146	642					0	0	1	0	0
DCST2	127579	broad.mit.edu	37	1	155005966	155005966	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:155005966C>T	uc001fgm.2	-	1	292	c.212G>A	c.(211-213)GGA>GAA	p.G71E	DCST2_uc009wpb.2_RNA|DCST1_uc010per.1_5'Flank|DCST1_uc001fgn.1_5'Flank|DCST1_uc010pes.1_5'Flank	NM_144622	NP_653223	Q5T1A1	DCST2_HUMAN	DC-STAMP domain containing 2	71	Helical; (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GCGAGAGAATCCCATGCCCAG	0.657													80	62					0	0	1	0	0
LMNA	4000	broad.mit.edu	37	1	156085021	156085021	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:156085021G>A	uc001fni.2	+	1	561	c.312G>A	c.(310-312)CTG>CTA	p.L104L	LMNA_uc001fnf.1_Silent_p.L104L|LMNA_uc001fng.2_Silent_p.L104L|LMNA_uc001fnh.2_Silent_p.L104L|LMNA_uc009wro.1_Silent_p.L104L	NM_170707	NP_733821	P02545	LMNA_HUMAN	lamin A/C isoform 1 precursor	104	Interaction with MLIP.|Coil 1B.|Rod.				cellular component disassembly involved in apoptosis|cellular response to hypoxia|establishment or maintenance of microtubule cytoskeleton polarity|muscle organ development|positive regulation of cell aging|regulation of apoptosis|regulation of cell migration	cytoplasm|lamin filament|nuclear envelope|nuclear envelope|perinuclear region of cytoplasm	protein binding|structural molecule activity|structural molecule activity			ovary(2)	2	Hepatocellular(266;0.158)					GCCTGCAGCTGGAGCTGAGCA	0.622									Werner_syndrome|Hutchinson-Gilford_Progeria_Syndrome				8	38					0	0	1	0	0
NTRK1	4914	broad.mit.edu	37	1	156848954	156848954	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:156848954G>A	uc001fqh.1	+	15	1902	c.1846G>A	c.(1846-1848)GAT>AAT	p.D616N	NTRK1_uc001fqf.1_Missense_Mutation_p.D580N|NTRK1_uc009wsi.1_Missense_Mutation_p.D315N|NTRK1_uc001fqi.1_Missense_Mutation_p.D610N|NTRK1_uc009wsk.1_Missense_Mutation_p.D613N	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	616	Cytoplasmic (Potential).|Protein kinase.				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	TGGTGGGGAGGATGTGGCTCC	0.632			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			17	48					0	0	1	0	0
PEAR1	375033	broad.mit.edu	37	1	156879582	156879582	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:156879582G>A	uc001fqj.1	+	12	1567	c.1451G>A	c.(1450-1452)GGA>GAA	p.G484E	PEAR1_uc001fqk.1_Missense_Mutation_p.G109E	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	484						integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TGCCCACCCGGAACCTGGGGC	0.627													17	69					0	0	1	0	0
CD5L	922	broad.mit.edu	37	1	157805847	157805847	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:157805847C>T	uc001frk.3	-	3	297	c.154G>A	c.(154-156)GGC>AGC	p.G52S		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	52	SRCR 1.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			ATGTCCCAGCCGTCATCACAC	0.617													161	144					0	0	1	0	0
OR10R2	343406	broad.mit.edu	37	1	158450321	158450321	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:158450321G>A	uc010pik.1	+	1	654	c.654G>A	c.(652-654)GTG>GTA	p.V218V	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	218	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					ACGAATTTGTGATATTCATTT	0.413													63	221					0	0	1	0	0
OR10X1	128367	broad.mit.edu	37	1	158549503	158549503	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:158549503C>T	uc010pin.1	-	1	187	c.187G>A	c.(187-189)GGT>AGT	p.G63S		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	63	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					CAAGTTAGACCCATGATGATC	0.473													69	79					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158597458	158597458	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:158597458C>T	uc001fst.1	-	40	5820	c.5621G>A	c.(5620-5622)CGA>CAA	p.R1874Q		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1874	Spectrin 18.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					ATTTTGTACTCGGGTCTCATG	0.428													83	89					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158644451	158644451	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:158644451G>A	uc001fst.1	-	9	1326	c.1127C>T	c.(1126-1128)TCA>TTA	p.S376L		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	376	Spectrin 5.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					AAAGTCAGATGAAAATCGATG	0.453													43	170					0	0	1	0	0
APCS	325	broad.mit.edu	37	1	159558206	159558206	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:159558206G>A	uc001ftv.2	+	2	476	c.380G>A	c.(379-381)TGG>TAG	p.W127*		NM_001639	NP_001630	P02743	SAMP_HUMAN	serum amyloid P component precursor	127	Pentaxin.				acute-phase response|chaperone-mediated protein complex assembly|protein folding	extracellular space	metal ion binding|sugar binding|unfolded protein binding			ovary(1)|breast(1)	2	all_hematologic(112;0.0429)					GCTGAATTTTGGATCAATGGG	0.478													21	99					0	0	1	0	0
FCGR3A	2214	broad.mit.edu	37	1	161514565	161514565	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:161514565C>T	uc001gat.3	-	5	640	c.503G>A	c.(502-504)GGC>GAC	p.G168D	FCGR3A_uc001gar.2_Missense_Mutation_p.G204D|FCGR3A_uc001gas.2_Missense_Mutation_p.G203D|FCGR3A_uc009wuh.2_Missense_Mutation_p.G167D|FCGR3A_uc009wui.2_Missense_Mutation_p.G168D	NM_001127595	NP_001121067	P08637	FCG3A_HUMAN	Fc fragment of IgG, low affinity IIIa, receptor	168	Extracellular (Potential).|Ig-like C2-type 2.				immune response|regulation of immune response	extracellular region|integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GAAGTAGGAGCCGCTGTCTTT	0.448													62	80					0	0	1	0	0
TBX19	9095	broad.mit.edu	37	1	168282176	168282176	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:168282176C>T	uc001gfl.2	+	8	1334	c.1283C>T	c.(1282-1284)CCC>CTC	p.P428L	TBX19_uc001gfj.3_Missense_Mutation_p.P296L|TBX19_uc001gfm.2_Missense_Mutation_p.P131L	NM_005149	NP_005140	O60806	TBX19_HUMAN	T-box 19	428					anatomical structure morphogenesis	nucleus	DNA binding				0	all_hematologic(923;0.215)					GCCTCGCATCCCTTCGCGGGC	0.622													6	112					0	0	1	0	0
SELP	6403	broad.mit.edu	37	1	169572424	169572424	+	Silent	SNP	G	A	A	rs145585796		TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:169572424G>A	uc001ggi.3	-	10	1610	c.1545C>T	c.(1543-1545)AGC>AGT	p.S515S	SELP_uc001ggh.2_Silent_p.S350S|SELP_uc009wvr.2_Silent_p.S515S	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	515	Extracellular (Potential).|Sushi 6.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	CATTCTGAGGGCTTAGCAAAG	0.408													27	149					0	0	1	0	0
KIFAP3	22920	broad.mit.edu	37	1	169951956	169951956	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:169951956A>T	uc001ggv.2	-	14	1830	c.1559T>A	c.(1558-1560)TTT>TAT	p.F520Y	KIFAP3_uc010plx.1_Missense_Mutation_p.F222Y	NM_014970	NP_055785	Q92845	KIFA3_HUMAN	kinesin-associated protein 3	520	ARM 3.				blood coagulation|plus-end-directed vesicle transport along microtubule|protein complex assembly|signal transduction	centrosome|condensed nuclear chromosome|cytosol|endoplasmic reticulum|kinesin II complex|spindle microtubule	kinesin binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TTCAATCACAAACTCCTCTTC	0.318													73	59					0	0	1	0	0
TNN	63923	broad.mit.edu	37	1	175086245	175086245	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:175086245C>T	uc001gkl.1	+	10	2403	c.2290C>T	c.(2290-2292)CTG>TTG	p.L764L		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	764	Fibronectin type-III 6.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		TAGCACTGTCCTGACGGGCCT	0.637													31	104					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175360568	175360568	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:175360568C>T	uc001gkp.1	-	5	1444	c.1363G>A	c.(1363-1365)GAA>AAA	p.E455K	TNR_uc009wwu.1_Missense_Mutation_p.E455K	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	455	Fibronectin type-III 2.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					ACTCCCCCTTCATTGTTCTGG	0.468													11	25					0	0	1	0	0
ASTN1	460	broad.mit.edu	37	1	176857236	176857236	+	Silent	SNP	G	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:176857236G>T	uc001glc.2	-	18	3257	c.3045C>A	c.(3043-3045)CTC>CTA	p.L1015L	ASTN1_uc001glb.1_Silent_p.L1015L|ASTN1_uc001gld.1_Silent_p.L1015L	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1023					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CACAGGTGGGGAGTCCATCAG	0.453													5	46					0.014758	0.0147923	1	1	0
FAM5B	57795	broad.mit.edu	37	1	177250615	177250615	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:177250615C>T	uc001glf.2	+	8	2615	c.2303C>T	c.(2302-2304)TCT>TTT	p.S768F	FAM5B_uc001glg.2_Missense_Mutation_p.S663F	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	768						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						GCTTTCAATTCTAAGCTGCCA	0.547													7	89					0	0	1	0	0
PLA2G4A	5321	broad.mit.edu	37	1	186880444	186880444	+	Silent	SNP	A	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:186880444A>C	uc001gsc.2	+	7	686	c.481A>C	c.(481-483)AGA>CGA	p.R161R	PLA2G4A_uc010pos.1_Intron	NM_024420	NP_077734	P47712	PA24A_HUMAN	cytosolic phospholipase A2, group IVA	161	Phospholipid binding (Probable).|PLA2c.				phospholipid catabolic process|platelet activating factor biosynthetic process|platelet activation	cytosol|endoplasmic reticulum membrane	calcium ion binding|calcium-dependent phospholipid binding|lysophospholipase activity			lung(2)|breast(1)	3					Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Medrysone(DB00253)|Quinacrine(DB01103)	CAGACAACAGAGAAAAGAACA	0.423													30	41					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197390355	197390355	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:197390355G>A	uc001gtz.2	+	6	1532	c.1397G>A	c.(1396-1398)GGA>GAA	p.G466E	CRB1_uc010poz.1_Missense_Mutation_p.G397E|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.G354E|CRB1_uc010ppb.1_Missense_Mutation_p.G466E|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_5'UTR|CRB1_uc001gub.1_Missense_Mutation_p.G115E	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	466	Extracellular (Potential).|EGF-like 11.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						GGCCAGCATGGATTCAGCTGC	0.502													81	67					0	0	1	0	0
IGFN1	91156	broad.mit.edu	37	1	201186493	201186493	+	Missense_Mutation	SNP	G	A	A	rs149553166	byFrequency	TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:201186493G>A	uc001gwc.2	+	6	1926	c.1154G>A	c.(1153-1155)CGG>CAG	p.R385Q	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						ACAGCACCTCGGGGCCCCGGC	0.652													39	128					0	0	1	0	0
SYT2	127833	broad.mit.edu	37	1	202572213	202572213	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:202572213C>T	uc001gye.2	-	4	572	c.379G>A	c.(379-381)GGG>AGG	p.G127R	SYT2_uc010pqb.1_Missense_Mutation_p.G127R|SYT2_uc009xaf.2_5'UTR	NM_001136504	NP_001129976	Q8N9I0	SYT2_HUMAN	synaptotagmin II	127	Cytoplasmic (Potential).				neurotransmitter secretion	cell junction|chromaffin granule membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	protein binding|transporter activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.169)		Botulinum Toxin Type B(DB00042)	TCACCTTCCCCCTCAGTCAGG	0.552													34	120					0	0	1	0	0
PPFIA4	8497	broad.mit.edu	37	1	203025619	203025619	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:203025619C>T	uc001gyz.2	+	5	1298	c.705C>T	c.(703-705)AGC>AGT	p.S235S	PPFIA4_uc009xaj.2_Silent_p.S866S|PPFIA4_uc010pqf.1_Silent_p.S448S|PPFIA4_uc001gza.2_Silent_p.S235S|PPFIA4_uc001gzb.1_5'Flank	NM_015053	NP_055868	O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f	235					cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						CAGCCCTGAGCCAGGAAGAAG	0.572													10	49					0	0	1	0	0
SLC26A9	115019	broad.mit.edu	37	1	205886448	205886448	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:205886448G>A	uc001hdq.2	-	20	2405	c.2291C>T	c.(2290-2292)TCA>TTA	p.S764L	SLC26A9_uc001hdm.2_5'UTR|SLC26A9_uc001hdn.2_5'UTR|SLC26A9_uc001hdo.2_Missense_Mutation_p.S432L|SLC26A9_uc001hdp.2_Missense_Mutation_p.S764L	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	764						integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			GTCCTCCTCTGAGTCGTACAA	0.587													63	288					0	0	1	0	0
CTSE	1510	broad.mit.edu	37	1	206328847	206328847	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:206328847C>T	uc001hdu.2	+	7	1032	c.914C>T	c.(913-915)CCC>CTC	p.P305L	CTSE_uc001hdv.2_Intron|CTSE_uc010prs.1_Intron	NM_001910	NP_001901	P14091	CATE_HUMAN	cathepsin E isoform a preproprotein	310					antigen processing and presentation of exogenous peptide antigen via MHC class II|digestion|proteolysis	endosome	aspartic-type endopeptidase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(75;0.0754)			GGGGCAGCCCCCGTGGATGGA	0.612													13	69					0	0	1	0	0
C1orf107	27042	broad.mit.edu	37	1	210016822	210016822	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:210016822T>C	uc001hhr.1	+	11	1884	c.1808T>C	c.(1807-1809)TTG>TCG	p.L603S	C1orf107_uc009xcu.1_Missense_Mutation_p.L318S	NM_014388	NP_055203	Q68CQ4	DIEXF_HUMAN	digestive-organ expansion factor homolog	603					multicellular organismal development	nucleus					0				OV - Ovarian serous cystadenocarcinoma(81;0.0367)		AACAAGATTTTGCCACAGTAT	0.413													5	30					0	0	1	0	0
SERTAD4	56256	broad.mit.edu	37	1	210411442	210411442	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:210411442C>T	uc001hhy.2	+	2	316	c.137C>T	c.(136-138)CCT>CTT	p.P46L	SERTAD4_uc009xcw.2_Missense_Mutation_p.P46L	NM_019605	NP_062551	Q9NUC0	SRTD4_HUMAN	SERTA domain containing 4	46							protein binding			ovary(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0237)|all cancers(67;0.127)		GCACAAGCTCCTTTGCAGGGA	0.642													40	56					0	0	1	0	0
NEK2	4751	broad.mit.edu	37	1	211847733	211847733	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:211847733C>T	uc001hir.1	-	2	365	c.219G>A	c.(217-219)CGG>CGA	p.R73R	NEK2_uc001hiq.1_Silent_p.R73R|NEK2_uc001his.3_Silent_p.R73R|NEK2_uc001hit.1_RNA	NM_002497	NP_002488	P51955	NEK2_HUMAN	NIMA-related kinase 2	73	Protein kinase.				cell division|centrosome separation|G2/M transition of mitotic cell cycle|meiosis|protein autophosphorylation|regulation of mitosis	centrosome|condensed chromosome kinetochore|cytosol|nucleolus	ATP binding|metal ion binding|protein binding|protein phosphatase binding|protein serine/threonine kinase activity			breast(2)|stomach(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.00203)|all cancers(67;0.0339)|Epithelial(68;0.0546)		GGTCAATAATCCGATCATAGT	0.408													23	33					0	0	1	0	0
FLVCR1	28982	broad.mit.edu	37	1	213032166	213032166	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:213032166G>A	uc001hjt.2	+	1	570	c.372G>A	c.(370-372)CAG>CAA	p.Q124Q	LQK1_uc001hjr.3_5'Flank|LQK1_uc001hjs.3_5'Flank	NM_014053	NP_054772	Q9Y5Y0	FLVC1_HUMAN	feline leukemia virus subgroup C cellular	124	Helical; (Potential).				cell death|cellular iron ion homeostasis|heme export|transmembrane transport	integral to plasma membrane	heme transporter activity|protein binding|receptor activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.00733)|all cancers(67;0.013)|GBM - Glioblastoma multiforme(131;0.0845)|Epithelial(68;0.11)		ACGCCTTTCAGTGGATCCAGT	0.612													20	34					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	215955511	215955511	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:215955511C>T	uc001hku.1	-	54	11000	c.10613G>A	c.(10612-10614)CGA>CAA	p.R3538Q		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3538	Extracellular (Potential).|Fibronectin type-III 20.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AATTCCATTTCGAAGAAGGAT	0.348										HNSCC(13;0.011)			5	40					0	0	1	0	0
SPATA17	128153	broad.mit.edu	37	1	217822300	217822300	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:217822300C>T	uc001hlh.1	+	2	171	c.145C>T	c.(145-147)CGG>TGG	p.R49W	SPATA17_uc009xdr.1_RNA|SPATA17_uc001hli.2_Missense_Mutation_p.R49W	NM_138796	NP_620151	Q96L03	SPT17_HUMAN	spermatogenesis associated 17	49	IQ 1.					cytoplasm	calmodulin binding			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0516)|all cancers(67;0.0891)|GBM - Glioblastoma multiforme(131;0.117)		ATGTCAAGTTCGGGCATATAT	0.308													20	42					0	0	1	0	0
DISP1	84976	broad.mit.edu	37	1	223165399	223165399	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:223165399A>G	uc001hnu.1	+	6	983	c.836A>G	c.(835-837)AAA>AGA	p.K279R		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	279					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		GAAAGAGAGAAAAGAGAAGTT	0.403													5	40					0	0	1	0	0
DISP1	84976	broad.mit.edu	37	1	223178203	223178203	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:223178203C>T	uc001hnu.1	+	8	3611	c.3464C>T	c.(3463-3465)TCC>TTC	p.S1155F		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	1155					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		AGTGCCTTTTCCCATGCCTTG	0.473													29	48					0	0	1	0	0
LBR	3930	broad.mit.edu	37	1	225594435	225594435	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:225594435C>T	uc001hoy.2	-	11	1557	c.1414G>A	c.(1414-1416)GCC>ACC	p.A472T	LBR_uc001hoz.2_Missense_Mutation_p.A472T|LBR_uc001hpa.1_Missense_Mutation_p.A472T	NM_002296	NP_002287	Q14739	LBR_HUMAN	lamin B receptor	472					cholesterol biosynthetic process	integral to nuclear inner membrane	chromo shadow domain binding|delta14-sterol reductase activity|DNA binding|lamin binding|receptor activity			ovary(1)|skin(1)	2	Breast(184;0.165)			GBM - Glioblastoma multiforme(131;0.117)		AAATAAAAGGCTTGGAAGCTG	0.398													16	42					0	0	1	0	0
COG2	22796	broad.mit.edu	37	1	230825826	230825826	+	Missense_Mutation	SNP	G	C	C	rs142462148		TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:230825826G>C	uc001htw.2	+	16	2012	c.1861G>C	c.(1861-1863)GGA>CGA	p.G621R	COG2_uc001htx.2_Missense_Mutation_p.G620R|COG2_uc010pwc.1_Missense_Mutation_p.G494R	NM_007357	NP_031383	Q14746	COG2_HUMAN	component of oligomeric golgi complex 2 isoform	621					Golgi organization|intra-Golgi vesicle-mediated transport|intracellular protein transport|oligosaccharide biosynthetic process|protein glycosylation	Golgi membrane|Golgi stack|Golgi transport complex	protein binding|protein transporter activity				0	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.178)				GCTTCAGAGCGGACACAAGGA	0.453													31	203					0	0	1	0	0
KCNK1	3775	broad.mit.edu	37	1	233750080	233750080	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:233750080G>A	uc010pxo.1	+	1	331	c.163G>A	c.(163-165)GAG>AAG	p.E55K		NM_002245	NP_002236	O00180	KCNK1_HUMAN	potassium channel, subfamily K, member 1	55						voltage-gated potassium channel complex	inward rectifier potassium channel activity			central_nervous_system(1)	1		all_cancers(173;0.00217)|all_epithelial(177;0.121)|Prostate(94;0.122)|Acute lymphoblastic leukemia(190;0.175)			Ibutilide(DB00308)|Quinidine(DB00908)	GCTGCGCCAGGAGCTGCGCAA	0.632													19	15					0	0	1	0	0
CHRM3	1131	broad.mit.edu	37	1	240071669	240071669	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:240071669G>A	uc001hyp.2	+	5	1697	c.918G>A	c.(916-918)AGG>AGA	p.R306R		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	306	Cytoplasmic (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	CCAACAGGAGGAAGTATGGCC	0.532													28	39					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240374458	240374458	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:240374458G>A	uc010pyd.1	+	6	4213	c.3988G>A	c.(3988-3990)GAA>AAA	p.E1330K	FMN2_uc010pye.1_Missense_Mutation_p.E1334K	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1330	FH2.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TGAATTTGAGGAATTATTTTC	0.328													22	108					0	0	1	0	0
RGS7	6000	broad.mit.edu	37	1	241099944	241099944	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:241099944G>A	uc001hyv.2	-	5	619	c.289C>T	c.(289-291)CAT>TAT	p.H97Y	RGS7_uc010pyh.1_Missense_Mutation_p.H71Y|RGS7_uc010pyj.1_Missense_Mutation_p.H13Y|RGS7_uc001hyu.2_Missense_Mutation_p.H97Y|RGS7_uc009xgn.1_Intron|RGS7_uc001hyw.2_Missense_Mutation_p.H97Y	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	97	DEP.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			GTGAGGACATGATCTGAGATT	0.398													51	78					0	0	1	0	0
ZNF695	57116	broad.mit.edu	37	1	247150352	247150352	+	Missense_Mutation	SNP	C	G	G			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:247150352C>G	uc009xgu.2	-	4	1610	c.1465G>C	c.(1465-1467)GAG>CAG	p.E489Q	ZNF695_uc001ica.2_Intron|ZNF695_uc001icb.1_Intron|ZNF695_uc009xgt.1_Intron|ZNF695_uc001ibx.2_Intron|ZNF695_uc001iby.2_Intron	NM_020394	NP_065127	Q8IW36	ZN695_HUMAN	zinc finger protein SBZF3	489					regulation of transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0	all_cancers(71;4.01e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			TATGGTTTCTCTCTGGTATGA	0.413													33	58					0	0	1	0	0
OR13G1	441933	broad.mit.edu	37	1	247835492	247835492	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:247835492C>T	uc001idi.1	-	1	852	c.852G>A	c.(850-852)CCG>CCA	p.P284P		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	284	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TGTACACCATCGGGTTTAATG	0.438													27	145					0	0	1	0	0
OR2W3	343171	broad.mit.edu	37	1	248059676	248059676	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:248059676G>A	uc001idp.1	+	3	1057	c.788G>A	c.(787-789)GGA>GAA	p.G263E	OR2W3_uc010pzb.1_Missense_Mutation_p.G263E	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	263	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			ATGCAGCCAGGAGCCAGTTCT	0.527													20	154					0	0	1	0	0
OR2L8	391190	broad.mit.edu	37	1	248112298	248112298	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:248112298C>T	uc001idt.1	+	1	139	c.139C>T	c.(139-141)CTC>TTC	p.L47F	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	47	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			CATGATTCTTCTCATCTTCTT	0.413													92	583					0	0	1	0	0
OR2M2	391194	broad.mit.edu	37	1	248343404	248343404	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:248343404C>T	uc010pzf.1	+	1	117	c.117C>T	c.(115-117)TTC>TTT	p.F39F		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	39	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TAGTGGCCTTCATGGGAAACT	0.522													250	376					0	0	1	0	0
OR2G6	391211	broad.mit.edu	37	1	248685744	248685744	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:248685744G>A	uc001ien.1	+	1	797	c.797G>A	c.(796-798)AGA>AAA	p.R266K		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	266	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GCCAATAGGAGATCCAAAAAC	0.443													76	67					0	0	1	0	0
MEIG1	644890	broad.mit.edu	37	10	15008489	15008489	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr10:15008489C>T	uc009xjk.1	+	2	170	c.22C>T	c.(22-24)CCA>TCA	p.P8S		NM_001080836	NP_001074305	Q5JSS6	MEIG1_HUMAN	meiosis expressed gene 1 homolog	8											0						TGACGTAAAACCAAAATCAGT	0.328													12	30					0	0	1	0	0
C10orf111	221060	broad.mit.edu	37	10	15138530	15138530	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr10:15138530C>T	uc001inw.2	-	2	568	c.294G>A	c.(292-294)TTG>TTA	p.L98L	RPP38_uc001iny.3_5'Flank|RPP38_uc009xjm.2_5'Flank|RPP38_uc001inx.3_5'Flank	NM_153244	NP_694976	Q8N326	CJ111_HUMAN	hypothetical protein LOC221060	98						integral to membrane					0						AAGGGTAGATCAACAGATCCA	0.527													20	62					0	0	1	0	0
TRDMT1	1787	broad.mit.edu	37	10	17201180	17201180	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr10:17201180G>A	uc001iop.2	-	7	556	c.508C>T	c.(508-510)CAG>TAG	p.Q170*	TRDMT1_uc001ioq.2_Nonsense_Mutation_p.Q146*|TRDMT1_uc001ior.2_Nonsense_Mutation_p.Q124*|TRDMT1_uc001ios.2_Nonsense_Mutation_p.Q99*|TRDMT1_uc009xjt.2_Nonsense_Mutation_p.Q89*|TRDMT1_uc010qcc.1_Nonsense_Mutation_p.Q99*|TRDMT1_uc010qcd.1_Intron|TRDMT1_uc009xjs.1_Nonsense_Mutation_p.Q87*|TRDMT1_uc009xju.1_RNA	NM_004412	NP_004403	O14717	TRDMT_HUMAN	tRNA aspartic acid methyltransferase 1 isoform	170					tRNA processing	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|RNA binding			ovary(1)	1						GGCTCTGACTGAAGCTTTGCA	0.328													24	80					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28224135	28224135	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr10:28224135C>T	uc009xky.2	-	16	2397	c.2299G>A	c.(2299-2301)GAT>AAT	p.D767N	ARMC4_uc010qds.1_Missense_Mutation_p.D292N|ARMC4_uc010qdt.1_Missense_Mutation_p.D459N|ARMC4_uc001itz.2_Missense_Mutation_p.D767N	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	767	ARM 5.						binding			ovary(4)|skin(2)	6						TCAGGCTGATCTGTTAGAAGT	0.428													20	60					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37506687	37506687	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr10:37506687G>A	uc001iza.1	+	33	3079	c.2980G>A	c.(2980-2982)GAA>AAA	p.E994K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1050	Potential.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AAAAATTAGGGAAGAATTAGG	0.318													14	37					0	0	1	0	0
SLC18A3	6572	broad.mit.edu	37	10	50819306	50819306	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr10:50819306G>A	uc001jhw.2	+	1	960	c.520G>A	c.(520-522)GAC>AAC	p.D174N	CHAT_uc001jhv.1_Intron|CHAT_uc001jhx.1_5'Flank|CHAT_uc001jhy.1_5'Flank|CHAT_uc001jia.2_5'Flank|CHAT_uc001jhz.2_5'Flank	NM_003055	NP_003046	Q16572	VACHT_HUMAN	vesicular acetylcholine transporter	174	Lumenal, vesicle (Potential).				neurotransmitter secretion	clathrin sculpted acetylcholine transport vesicle membrane|integral to plasma membrane|membrane fraction	acetylcholine transmembrane transporter activity			ovary(2)	2						CTTCGCCGAGGACTACGCCAC	0.652													21	26					0	0	1	0	0
ZWINT	11130	broad.mit.edu	37	10	58119549	58119549	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr10:58119549C>T	uc001jjx.1	-	4	359	c.322G>A	c.(322-324)GAG>AAG	p.E108K	ZWINT_uc001jjy.1_Missense_Mutation_p.E108K|ZWINT_uc001jka.1_Missense_Mutation_p.E108K|ZWINT_uc009xoy.1_RNA	NM_007057	NP_008988	O95229	ZWINT_HUMAN	ZW10 interactor isoform a	108	Interaction with NDC80 and ZW10.|Potential.				cell division|establishment of localization in cell|mitotic cell cycle checkpoint|mitotic prometaphase|mitotic sister chromatid segregation|phosphatidylinositol-mediated signaling|spindle organization	condensed chromosome kinetochore|cytosol|nucleus	protein N-terminus binding				0						TTGATGGCCTCTACGTGCTCC	0.537													25	61					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61830807	61830807	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr10:61830807C>T	uc001jky.2	-	37	10024	c.9832G>A	c.(9832-9834)GAG>AAG	p.E3278K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3278					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						ATGTCAACCTCTTTTTCTGGG	0.463													60	76					0	0	1	0	0
CTNNA3	29119	broad.mit.edu	37	10	68526081	68526081	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr10:68526081C>T	uc009xpn.1	-	9	1345	c.1222G>A	c.(1222-1224)GAA>AAA	p.E408K	CTNNA3_uc001jmw.2_Missense_Mutation_p.E408K|CTNNA3_uc001jmx.3_Missense_Mutation_p.E408K	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	408					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						ATTTCCTTTTCCCGGCCATTC	0.433													19	71					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73559030	73559030	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr10:73559030C>T	uc001jrx.3	+	49	7594	c.7217C>T	c.(7216-7218)TCC>TTC	p.S2406F	CDH23_uc001jsg.3_Missense_Mutation_p.S166F|CDH23_uc001jsh.3_Missense_Mutation_p.S166F|CDH23_uc001jsi.3_Missense_Mutation_p.S166F	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	2406	Cadherin 23.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						GACCAGCCCTCCTACCAGGTG	0.622													24	19					0	0	1	0	0
ASCC1	51008	broad.mit.edu	37	10	73956612	73956612	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr10:73956612C>T	uc001jst.1	-	6	638	c.530G>A	c.(529-531)GGA>GAA	p.G177E	ASCC1_uc001jsr.1_Missense_Mutation_p.G64E|ASCC1_uc001jss.1_Missense_Mutation_p.G149E|ASCC1_uc001jsu.1_Missense_Mutation_p.G149E|ASCC1_uc010qju.1_Missense_Mutation_p.G170E			Q8N9N2	ASCC1_HUMAN	RecName: Full=Activating signal cointegrator 1 complex subunit 1; AltName: Full=ASC-1 complex subunit p50; AltName: Full=Trip4 complex subunit p50;	177					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|transcription factor complex	RNA binding				0						TCTCAGGAATCCTTCCTGAAC	0.408													17	13					0	0	1	0	0
STAMBPL1	57559	broad.mit.edu	37	10	90673167	90673167	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr10:90673167C>T	uc001kfk.2	+	6	1153	c.730C>T	c.(730-732)CCT>TCT	p.P244S	STAMBPL1_uc010qmx.1_Missense_Mutation_p.P244S|STAMBPL1_uc009xto.2_RNA|STAMBPL1_uc001kfl.2_Missense_Mutation_p.P244S|STAMBPL1_uc001kfn.2_Missense_Mutation_p.P78S	NM_020799	NP_065850	Q96FJ0	STALP_HUMAN	STAM binding protein-like 1	244							metal ion binding|metallopeptidase activity|protein binding			ovary(1)	1		Colorectal(252;0.0381)		Colorectal(12;6.38e-05)|COAD - Colon adenocarcinoma(12;7.75e-05)		CCACTCTCCTCCTGTAAACAG	0.453													47	49					0	0	1	0	0
CYP2C19	1557	broad.mit.edu	37	10	96602772	96602772	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr10:96602772C>T	uc010qnz.1	+	7	1140	c.1140C>T	c.(1138-1140)CTC>CTT	p.L380L	CYP2C19_uc010qny.1_Silent_p.L358L	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	380					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	GAAACTACCTCATTCCCAAGG	0.468													16	64					0	0	1	0	0
CYP2C9	1559	broad.mit.edu	37	10	96707690	96707690	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr10:96707690G>A	uc001kka.3	+	4	661	c.636G>A	c.(634-636)TGG>TGA	p.W212*	CYP2C9_uc009xut.2_Nonsense_Mutation_p.W212*	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	212					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	GCAGCCCCTGGATCCAGGTAA	0.348													27	46					0	0	1	0	0
CASP7	840	broad.mit.edu	37	10	115489079	115489079	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr10:115489079C>T	uc001lan.2	+	7	866	c.692C>T	c.(691-693)TCG>TTG	p.S231L	CASP7_uc001lam.2_Missense_Mutation_p.R220C|CASP7_uc001lao.2_Missense_Mutation_p.S264L|CASP7_uc001lap.2_Missense_Mutation_p.S231L|CASP7_uc001laq.2_Missense_Mutation_p.S231L|CASP7_uc010qsa.1_Missense_Mutation_p.S316L|CASP7_uc010qsb.1_Missense_Mutation_p.S206L	NM_033339	NP_203125	P55210	CASP7_HUMAN	caspase 7 isoform alpha	231					activation of caspase activity by cytochrome c|cellular component disassembly involved in apoptosis|induction of apoptosis by intracellular signals|proteolysis	cytosol|endoplasmic reticulum membrane|mitochondrial membrane|nucleoplasm	cysteine-type endopeptidase activity|protein binding			ovary(1)	1		Colorectal(252;0.0946)|Breast(234;0.188)		Epithelial(162;0.012)|all cancers(201;0.014)		GGCTATTACTCGTGGAGGAGC	0.507													39	55					0	0	1	0	0
PDZD8	118987	broad.mit.edu	37	10	119044242	119044242	+	Missense_Mutation	SNP	G	A	A	rs144665491	byFrequency	TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr10:119044242G>A	uc001lde.1	-	5	2201	c.2002C>T	c.(2002-2004)CCT>TCT	p.P668S		NM_173791	NP_776152	Q8NEN9	PDZD8_HUMAN	PDZ domain containing 8	668					intracellular signal transduction		metal ion binding				0		Colorectal(252;0.19)		all cancers(201;0.0121)		TCCTTAGTAGGGCAGGAAGTT	0.428													6	61					0	0	1	0	0
FANK1	92565	broad.mit.edu	37	10	127677213	127677213	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr10:127677213G>T	uc001ljh.3	+	3	389	c.285G>T	c.(283-285)GAG>GAT	p.E95D	FANK1_uc010quk.1_Missense_Mutation_p.E89D|FANK1_uc009yan.2_Missense_Mutation_p.E95D|FANK1_uc001lji.2_Missense_Mutation_p.E89D	NM_145235	NP_660278	Q8TC84	FANK1_HUMAN	fibronectin type III and ankyrin repeat domains	95	Fibronectin type-III.					cytoplasm|nucleus				ovary(1)	1		all_lung(145;0.00752)|Lung NSC(174;0.0115)|Colorectal(57;0.0847)|all_neural(114;0.0936)				GGGAGTGTGAGTACAGCCCAC	0.488													57	59					5.0973e-17	5.24955e-17	1	1	0
JAKMIP3	282973	broad.mit.edu	37	10	133950552	133950552	+	Silent	SNP	C	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr10:133950552C>A	uc001lkx.3	+	6	1146	c.1146C>A	c.(1144-1146)CCC>CCA	p.P382P		NM_001105521	NP_001098991			Janus kinase and microtubule interacting protein											breast(1)	1		all_cancers(35;5.63e-09)|all_epithelial(44;9.25e-07)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|Colorectal(31;0.0721)|all_neural(114;0.0726)|Breast(234;0.0949)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;0.000104)|Epithelial(32;0.000142)|all cancers(32;0.000185)|BRCA - Breast invasive adenocarcinoma(275;0.224)		TACGGAGACCCAGTTCCTTGA	0.498													11	27					6.40141e-05	6.46138e-05	1	1	0
FRG2B	441581	broad.mit.edu	37	10	135440152	135440152	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr10:135440152T>C	uc010qvg.1	-	1	148	c.95A>G	c.(94-96)AAG>AGG	p.K32R		NM_001080998	NP_001074467	Q96QU4	FRG2B_HUMAN	FSHD region gene 2 family, member B	32						nucleus					0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		ATCTGAGCCCTTTTCTGTAAA	0.502													6	102					0	0	1	0	0
PKP3	11187	broad.mit.edu	37	11	404102	404102	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:404102G>A	uc001lpc.2	+	11	2313	c.2237G>A	c.(2236-2238)CGA>CAA	p.R746Q		NM_007183	NP_009114	Q9Y446	PKP3_HUMAN	plakophilin 3	746					cell adhesion	desmosome|nucleus	binding			skin(1)	1		all_cancers(49;3.02e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GACGGACTCCGAAAGCTCATC	0.612													37	68					0	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1083068	1083068	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:1083068G>A	uc001lsx.1	+	16	1995	c.1968G>A	c.(1966-1968)AAG>AAA	p.K656K		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	656						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CTGCAGACAAGGATGTGGGCT	0.667													5	11					0	0	1	0	0
KRTAP5-3	387266	broad.mit.edu	37	11	1629362	1629362	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:1629362C>T	uc001ltw.1	-	1	332	c.254G>A	c.(253-255)GGG>GAG	p.G85E		NM_001012708	NP_001012726	Q6L8H2	KRA53_HUMAN	keratin associated protein 5-3	85	11 X 4 AA repeats of C-C-X-P.					keratin filament				ovary(2)	2		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000618)|Lung(200;0.0684)|LUSC - Lung squamous cell carcinoma(625;0.0822)		GCCACAGCCCCCCTTGGAGCC	0.667													61	99					0	0	1	0	0
OR51A4	401666	broad.mit.edu	37	11	4967551	4967551	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:4967551G>A	uc010qys.1	-	1	780	c.780C>T	c.(778-780)GCC>GCT	p.A260A		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	260	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGTGGACAACGGCCAGGTTGA	0.468													11	75					0	0	1	0	0
OR51A2	401667	broad.mit.edu	37	11	4976164	4976164	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:4976164G>A	uc010qyt.1	-	1	780	c.780C>T	c.(778-780)GCC>GCT	p.A260A		NM_001004748	NP_001004748	Q8NGJ7	O51A2_HUMAN	olfactory receptor, family 51, subfamily A,	260	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGTGGACAACGGCCAGGTTGA	0.468													10	78					0	0	1	0	0
OR52E8	390079	broad.mit.edu	37	11	5878145	5878145	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:5878145G>A	uc010qzr.1	-	1	788	c.788C>T	c.(787-789)TCA>TTA	p.S263L	TRIM5_uc001mbq.1_Intron	NM_001005168	NP_001005168	Q6IFG1	O52E8_HUMAN	olfactory receptor, family 52, subfamily E,	263	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.114)		Epithelial(150;2.37e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGTCAAGAATGAAAAAAATGC	0.428													19	96					0	0	1	0	0
OR52E8	390079	broad.mit.edu	37	11	5878833	5878833	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:5878833C>T	uc010qzr.1	-	1	100	c.100G>A	c.(100-102)GGA>AGA	p.G34R	TRIM5_uc001mbq.1_Intron	NM_001005168	NP_001005168	Q6IFG1	O52E8_HUMAN	olfactory receptor, family 52, subfamily E,	34	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.114)		Epithelial(150;2.37e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAAGGGACTCCAATCCAAATG	0.458													51	70					0	0	1	0	0
SYT9	143425	broad.mit.edu	37	11	7441758	7441758	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:7441758C>T	uc001mfe.2	+	6	1596	c.1359C>T	c.(1357-1359)ATC>ATT	p.I453I	SYT9_uc001mfd.2_RNA|SYT9_uc009yfi.2_RNA	NM_175733	NP_783860	Q86SS6	SYT9_HUMAN	synaptotagmin IX	453	Cytoplasmic (Potential).|C2 2.					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|large_intestine(1)	3				Epithelial(150;1.34e-07)|LUSC - Lung squamous cell carcinoma(625;0.0949)		ATGAGATCATCGGCGTGTGTC	0.443													15	69					0	0	1	0	0
OR10A6	390093	broad.mit.edu	37	11	7949552	7949552	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:7949552G>A	uc010rbh.1	-	1	658	c.658C>T	c.(658-660)CGA>TGA	p.R220*		NM_001004461	NP_001004461	Q8NH74	O10A6_HUMAN	olfactory receptor, family 10, subfamily A,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AACAGAACTCGAATGTAAGAC	0.433													26	44					0	0	1	0	0
SOX6	55553	broad.mit.edu	37	11	16010698	16010698	+	Missense_Mutation	SNP	T	G	G			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:16010698T>G	uc001mme.2	-	14	1883	c.1850A>C	c.(1849-1851)GAA>GCA	p.E617A	SOX6_uc001mmd.2_Missense_Mutation_p.E580A|SOX6_uc001mmf.2_Missense_Mutation_p.E577A|SOX6_uc001mmg.2_Missense_Mutation_p.E584A	NM_001145819	NP_001139291	P35712	SOX6_HUMAN	SRY (sex determining region Y)-box 6 isoform 4	604					muscle organ development	nucleus	sequence-specific DNA binding transcription factor activity			ovary(3)	3						GACTCGTGCTTCAGCCACAGT	0.522											OREG0020800	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	41	104					0	0	1	0	0
SAA2	6289	broad.mit.edu	37	11	18267499	18267499	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:18267499G>A	uc001mnz.3	-	3	225	c.188C>T	c.(187-189)GCC>GTC	p.A63V	SAA2_uc009yhj.2_Missense_Mutation_p.A63V	NM_030754	NP_110381	P02735	SAA_HUMAN	serum amyloid A2 isoform a	63					acute-phase response|elevation of cytosolic calcium ion concentration|innate immune response|lymphocyte chemotaxis|macrophage chemotaxis|negative regulation of inflammatory response|neutrophil chemotaxis|platelet activation|positive regulation of cell adhesion|positive regulation of interleukin-1 secretion	high-density lipoprotein particle	G-protein-coupled receptor binding				0					Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	TCCCCTTTTGGCAGCATCATA	0.572													7	58					0	0	1	0	0
NAV2	89797	broad.mit.edu	37	11	20089873	20089873	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:20089873C>T	uc010rdm.1	+	24	5441	c.5080C>T	c.(5080-5082)CGC>TGC	p.R1694C	NAV2_uc001mpp.2_Missense_Mutation_p.R1574C|NAV2_uc001mpr.3_Missense_Mutation_p.R1638C|NAV2_uc001mpt.2_Missense_Mutation_p.R687C|NAV2_uc009yhx.2_Missense_Mutation_p.R702C|NAV2_uc009yhy.1_Missense_Mutation_p.R600C|NAV2_uc009yhz.2_Missense_Mutation_p.R283C|NAV2_uc001mpu.2_Missense_Mutation_p.R76C	NM_145117	NP_660093	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 2	1694	Potential.					nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						TCTTTAGATTCGCAAGCTGCG	0.483													25	69					0	0	1	0	0
FANCF	2188	broad.mit.edu	37	11	22646955	22646955	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:22646955G>A	uc001mql.1	-	1	433	c.402C>T	c.(400-402)GCC>GCT	p.A134A		NM_022725	NP_073562	Q9NPI8	FANCF_HUMAN	Fanconi anemia, complementation group F	134					DNA repair	nucleoplasm	protein binding			skin(1)	1						GGGCAAGGCGGGCCAGGCTCT	0.647			N|F			AML|leukemia		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia		OREG0020844	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	76	164					0	0	1	0	0
CAPRIN1	4076	broad.mit.edu	37	11	34119268	34119268	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:34119268G>A	uc001mvh.1	+	18	2214	c.2025G>A	c.(2023-2025)AAG>AAA	p.K675K	CAPRIN1_uc001mvg.2_Silent_p.K675K|CAPRIN1_uc001mvi.2_Silent_p.K675K|CAPRIN1_uc001mvj.1_Silent_p.K594K	NM_005898	NP_005889	Q14444	CAPR1_HUMAN	membrane component chromosome 11 surface marker	675					negative regulation of translation|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis	cytoplasmic mRNA processing body|cytosol|dendrite|integral to plasma membrane|stress granule	protein binding|RNA binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.00045)|all_hematologic(20;0.0016)				AGAATTTCAAGCGAGGCTCTG	0.443													42	88					0	0	1	0	0
AMBRA1	55626	broad.mit.edu	37	11	46564875	46564875	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:46564875G>A	uc010rgu.1	-	7	1052	c.692C>T	c.(691-693)TCA>TTA	p.S231L	AMBRA1_uc010rgt.1_5'Flank|AMBRA1_uc009ylc.1_Missense_Mutation_p.S231L|AMBRA1_uc001ncu.1_Missense_Mutation_p.S231L|AMBRA1_uc001ncv.2_Missense_Mutation_p.S231L|AMBRA1_uc001ncw.2_Missense_Mutation_p.S231L|AMBRA1_uc001ncx.2_Missense_Mutation_p.S231L	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	231					autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		AACTGGCTGTGATTGCAGGAG	0.572													25	38					0	0	1	0	0
MADD	8567	broad.mit.edu	37	11	47304015	47304015	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:47304015G>A	uc001ner.1	+	9	1744	c.1553G>A	c.(1552-1554)CGG>CAG	p.R518Q	MADD_uc001neq.2_Missense_Mutation_p.R518Q|MADD_uc001nev.1_Missense_Mutation_p.R518Q|MADD_uc001nes.1_Missense_Mutation_p.R518Q|MADD_uc001net.1_Missense_Mutation_p.R518Q|MADD_uc009yln.1_Missense_Mutation_p.R518Q|MADD_uc001neu.1_Missense_Mutation_p.R518Q|MADD_uc001nex.2_Missense_Mutation_p.R518Q|MADD_uc001nez.2_Missense_Mutation_p.R518Q|MADD_uc001new.2_Missense_Mutation_p.R518Q	NM_003682	NP_003673	Q8WXG6	MADD_HUMAN	MAP-kinase activating death domain-containing	518	dDENN.				activation of MAPK activity|apoptosis|cell surface receptor linked signaling pathway|regulation of apoptosis|regulation of cell cycle	cytoplasm|integral to membrane|plasma membrane	death receptor binding|protein kinase activator activity|Rab guanyl-nucleotide exchange factor activity			ovary(5)|skin(4)|central_nervous_system(2)	11				Lung(87;0.182)		CTCTTTCCTCGGCCTGTGGTA	0.557													19	80					0	0	1	0	0
OR4C3	256144	broad.mit.edu	37	11	48346753	48346753	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:48346753C>T	uc010rhv.1	+	1	261	c.261C>T	c.(259-261)TTC>TTT	p.F87F		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGTATTTTTTCCTGGCCAACC	0.453													10	115					0	0	1	0	0
LOC646813	646813	broad.mit.edu	37	11	50375378	50375378	+	RNA	SNP	T	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:50375378T>C	uc001nhe.2	+	3		c.269T>C			LOC646813_uc001nhf.1_RNA|LOC646813_uc001nhg.1_RNA|LOC646813_uc001nhh.1_RNA|LOC646813_uc010rib.1_RNA	NR_024504				Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit09-11-09-R.												0						ATGGGAGGACTTAACCAATTG	0.358													17	28					0	0	1	0	0
OR5T3	390154	broad.mit.edu	37	11	56020129	56020129	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:56020129C>T	uc010rjd.1	+	1	454	c.454C>T	c.(454-456)CAC>TAC	p.H152Y		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	152	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					GGCTTATGATCACTATGTAGC	0.408													59	132					0	0	1	0	0
OR5R1	219479	broad.mit.edu	37	11	56185229	56185229	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:56185229G>A	uc010rji.1	-	1	480	c.480C>T	c.(478-480)ACC>ACT	p.T160T		NM_001004744	NP_001004744	Q8NH85	OR5R1_HUMAN	olfactory receptor, family 5, subfamily R,	160	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					AAGTGATAACGGTGTGGAAGA	0.453													32	65					0	0	1	0	0
OR5B21	219968	broad.mit.edu	37	11	58275399	58275399	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:58275399G>A	uc010rki.1	-	1	180	c.180C>T	c.(178-180)TTC>TTT	p.F60F		NM_001005218	NP_001005218	A6NL26	OR5BL_HUMAN	olfactory receptor, family 5, subfamily B,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GGTTACTGAGGAAAAAGTACA	0.502													26	51					0	0	1	0	0
GLYATL1	92292	broad.mit.edu	37	11	58723129	58723129	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:58723129G>A	uc001nnf.2	+	8	914	c.538G>A	c.(538-540)GGG>AGG	p.G180R	uc001nng.1_Intron|GLYATL1_uc001nnh.1_Missense_Mutation_p.G211R|GLYATL1_uc001nni.1_Missense_Mutation_p.G180R|GLYATL1_uc001nnj.1_Missense_Mutation_p.G180R			Q969I3	GLYL1_HUMAN	SubName: Full=Glycine acyltransferase family-C; SubName: Full=Glycine-N-acyltransferase-like 1, isoform CRA_a;	180						mitochondrion	glycine N-acyltransferase activity			ovary(1)	1					Glycine(DB00145)	CTCTTATTCTGGGCTGGTAAA	0.468													22	46					0	0	1	0	0
FAM111A	63901	broad.mit.edu	37	11	58920677	58920677	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:58920677C>T	uc010rkp.1	+	5	1763	c.1536C>T	c.(1534-1536)GTC>GTT	p.V512V	FAM111A_uc010rkq.1_Silent_p.V512V|FAM111A_uc010rkr.1_Silent_p.V512V|FAM111A_uc001nno.2_Silent_p.V512V|FAM111A_uc001nnp.2_Silent_p.V512V|FAM111A_uc001nnq.2_Silent_p.V512V	NM_001142521	NP_001135993	Q96PZ2	F111A_HUMAN	hypothetical protein LOC63901	512					proteolysis		serine-type endopeptidase activity			ovary(3)	3		all_epithelial(135;0.139)				CAGAGTATGTCCATATGTATA	0.428													29	116					0	0	1	0	0
BEST1	7439	broad.mit.edu	37	11	61727429	61727429	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:61727429G>A	uc001nss.2	+	9	1594	c.1014G>A	c.(1012-1014)TGG>TGA	p.W338*	BEST1_uc010rlq.1_Missense_Mutation_p.G346E|BEST1_uc010rlr.1_Intron|BEST1_uc010rls.1_Intron|BEST1_uc001nsr.2_Nonsense_Mutation_p.W278*|BEST1_uc009ynt.2_RNA|BEST1_uc010rlt.1_Nonsense_Mutation_p.W278*|BEST1_uc001nst.2_Nonsense_Mutation_p.W251*|BEST1_uc010rlu.1_Missense_Mutation_p.G300E|BEST1_uc010rlv.1_Nonsense_Mutation_p.W232*	NM_004183	NP_004174	O76090	BEST1_HUMAN	bestrophin 1 isoform 1	338	Cytoplasmic (Potential).				response to stimulus|transepithelial chloride transport|visual perception	basolateral plasma membrane|chloride channel complex|cytosol|membrane fraction	chloride channel activity			central_nervous_system(1)	1						ACATGTACTGGAATAAGCCCG	0.597													5	11					0	0	1	0	0
AHNAK	79026	broad.mit.edu	37	11	62296610	62296610	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:62296610G>A	uc001ntl.2	-	5	5579	c.5279C>T	c.(5278-5280)CCA>CTA	p.P1760L	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	1760					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CTTTCCTTCTGGTCCCTCAAT	0.478													84	143					0	0	1	0	0
RTN3	10313	broad.mit.edu	37	11	63488180	63488180	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:63488180C>T	uc001nxq.2	+	3	2393	c.2206C>T	c.(2206-2208)CTT>TTT	p.L736F	RTN3_uc001nxo.2_Intron|RTN3_uc001nxm.2_Intron|RTN3_uc001nxn.2_Missense_Mutation_p.L717F|RTN3_uc001nxp.2_Intron|RTN3_uc009yov.2_Missense_Mutation_p.L624F|RTN3_uc010rmt.1_Intron|RTN3_uc010rmu.1_Intron	NM_201428	NP_958831	O95197	RTN3_HUMAN	reticulon 3 isoform b	736					apoptosis|endoplasmic reticulum tubular network organization|interspecies interaction between organisms|response to stress|vesicle-mediated transport	endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane				ovary(1)	1						AGTAGCATCTCTTGACTTAGA	0.413													14	52					0	0	1	0	0
PLCB3	5331	broad.mit.edu	37	11	64026056	64026056	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:64026056C>T	uc001nzb.2	+	11	1124	c.1124C>T	c.(1123-1125)CCC>CTC	p.P375L	PLCB3_uc009ypg.1_Missense_Mutation_p.P375L|PLCB3_uc009yph.1_Missense_Mutation_p.P308L|PLCB3_uc009ypi.2_Missense_Mutation_p.P375L	NM_000932	NP_000923	Q01970	PLCB3_HUMAN	phospholipase C beta 3	375	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process|synaptic transmission	cytosol	calcium ion binding|calmodulin binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|pancreas(1)	2						GAGGAGGAACCCTTCATTACC	0.647													37	82					0	0	1	0	0
EHBP1L1	254102	broad.mit.edu	37	11	65350131	65350131	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:65350131T>C	uc001oeo.3	+	9	2253	c.1988T>C	c.(1987-1989)GTT>GCT	p.V663A	EHBP1L1_uc001oep.1_Intron	NM_001099409	NP_001092879	Q8N3D4	EH1L1_HUMAN	tangerin	663	Glu-rich.									central_nervous_system(1)	1						GGTTCAGGAGTTTTGCAGACA	0.512													5	55					0	0	1	0	0
PACS1	55690	broad.mit.edu	37	11	66001661	66001661	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:66001661C>T	uc001oha.1	+	17	2186	c.2052C>T	c.(2050-2052)TTC>TTT	p.F684F	PACS1_uc010rou.1_Silent_p.F220F	NM_018026	NP_060496	Q6VY07	PACS1_HUMAN	phosphofurin acidic cluster sorting protein 1	684					interspecies interaction between organisms|regulation of defense response to virus by virus|viral reproduction	cytosol	protein binding			ovary(6)	6						GTAGTTCCTTCCTGGATTCTG	0.537													45	116					0	0	1	0	0
PC	5091	broad.mit.edu	37	11	66620283	66620283	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:66620283G>A	uc001ojn.1	-	12	1587	c.1538C>T	c.(1537-1539)ACC>ATC	p.T513I	PC_uc001ojo.1_Missense_Mutation_p.T513I|PC_uc001ojp.1_Missense_Mutation_p.T513I|PC_uc001ojm.1_5'Flank	NM_022172	NP_071504	P11498	PYC_HUMAN	pyruvate carboxylase precursor	513					gluconeogenesis|lipid biosynthetic process	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|pyruvate carboxylase activity			ovary(2)|lung(1)|kidney(1)	4		Melanoma(852;0.0525)		Lung(977;0.153)|LUSC - Lung squamous cell carcinoma(976;0.227)	Biotin(DB00121)|Pyruvic acid(DB00119)	AATCGGGGTGGTTGGACCGTT	0.637													11	41					0	0	1	0	0
RAD9A	5883	broad.mit.edu	37	11	67159653	67159653	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:67159653C>T	uc001okr.2	+	2	149	c.56C>T	c.(55-57)TCC>TTC	p.S19F		NM_004584	NP_004575	Q99638	RAD9A_HUMAN	RAD9 homolog	19					DNA damage checkpoint|DNA repair|DNA replication|DNA replication checkpoint	nucleoplasm	3'-5' exonuclease activity|exodeoxyribonuclease III activity|histone deacetylase binding|protein kinase binding|SH3 domain binding				0			BRCA - Breast invasive adenocarcinoma(15;8.53e-07)			GCCGTCCACTCCCTGTCCCGC	0.716								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					6	15					0	0	1	0	0
TBC1D10C	374403	broad.mit.edu	37	11	67174417	67174417	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:67174417C>T	uc001ola.2	+	8	797	c.768C>T	c.(766-768)TTC>TTT	p.F256F	PPP1CA_uc001okx.1_Intron|TBC1D10C_uc001okz.2_Intron|TBC1D10C_uc001olb.2_RNA	NM_198517	NP_940919	Q8IV04	TB10C_HUMAN	TBC1 domain family, member 10C	256	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			CCGAGTGGTTCCTGTGCCTCT	0.682													53	181					0	0	1	0	0
TBX10	347853	broad.mit.edu	37	11	67399796	67399796	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:67399796C>T	uc001omp.2	-	7	949	c.861G>A	c.(859-861)AGG>AGA	p.R287R	NUDT8_uc001omn.2_5'Flank|NUDT8_uc001omo.1_5'Flank	NM_005995	NP_005986	O75333	TBX10_HUMAN	T-box 10	287					anatomical structure morphogenesis|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						TACCTTTCTCCCTGTCTGTGG	0.622													17	106					0	0	1	0	0
SLCO2B1	11309	broad.mit.edu	37	11	74904307	74904307	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:74904307C>T	uc001owb.2	+	9	1507	c.1120C>T	c.(1120-1122)CTG>TTG	p.L374L	SLCO2B1_uc010rrq.1_Silent_p.L119L|SLCO2B1_uc010rrr.1_Silent_p.L230L|SLCO2B1_uc010rrs.1_Silent_p.L258L|SLCO2B1_uc001owc.2_Silent_p.L147L|SLCO2B1_uc001owd.2_Silent_p.L352L	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	374	Helical; Name=7; (Potential).				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	CCCCATCTTCCTGCTGGTGGT	0.627													33	60					0	0	1	0	0
FZD4	8322	broad.mit.edu	37	11	86663456	86663456	+	Silent	SNP	A	G	G			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:86663456A>G	uc001pce.2	-	2	648	c.342T>C	c.(340-342)ATT>ATC	p.I114I	PRSS23_uc001pcc.1_RNA	NM_012193	NP_036325	Q9ULV1	FZD4_HUMAN	frizzled 4 precursor	114	FZ.|Extracellular (Potential).		I -> T (in EVR1).		canonical Wnt receptor signaling pathway|cellular response to retinoic acid|embryo development|negative regulation of cell-substrate adhesion|neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|progesterone secretion|regulation of vascular endothelial growth factor receptor signaling pathway|substrate adhesion-dependent cell spreading|vasculogenesis|Wnt receptor signaling pathway, calcium modulating pathway	cell projection|cell surface|cytoplasm	cytokine binding|G-protein coupled receptor activity|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|Wnt receptor activity|Wnt-protein binding			large_intestine(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				CGCATGGGCCAATGGGGATGT	0.448													37	65					0	0	1	0	0
KIAA1377	57562	broad.mit.edu	37	11	101818843	101818843	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:101818843C>T	uc001pgm.2	+	4	746	c.476C>T	c.(475-477)CCC>CTC	p.P159L	KIAA1377_uc001pgn.2_Missense_Mutation_p.P115L|KIAA1377_uc009yxa.1_5'UTR	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	159							protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		GTAAACCTTCCCTTTTCCCGT	0.343													11	25					0	0	1	0	0
EXPH5	23086	broad.mit.edu	37	11	108384738	108384738	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:108384738G>A	uc001pkk.2	-	6	1607	c.1496C>T	c.(1495-1497)TCA>TTA	p.S499L	EXPH5_uc010rvy.1_Missense_Mutation_p.S311L|EXPH5_uc010rvz.1_Missense_Mutation_p.S343L|EXPH5_uc010rwa.1_Missense_Mutation_p.S423L	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	499					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		AGAACTGAATGATTTCCTGCT	0.423													25	46					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	121031050	121031050	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:121031050T>A	uc010rzo.1	+	14	4896	c.4896T>A	c.(4894-4896)GAT>GAA	p.D1632E		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	1632	VWFD 4.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		TAACAGATGATTATGTGACCT	0.512													54	70					0	0	1	0	0
ROBO4	54538	broad.mit.edu	37	11	124765452	124765453	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:124765452_124765453GG>AA	uc001qbg.2	-	6	1076_1077	c.936_937CC>TT	c.(934-939)GGCCTC>GGTTTC	p.L313F	ROBO4_uc010sas.1_Missense_Mutation_p.L168F|ROBO4_uc001qbh.2_Missense_Mutation_p.L203F|ROBO4_uc001qbi.2_5'Flank|ROBO4_uc010sat.1_5'Flank	NM_019055	NP_061928	Q8WZ75	ROBO4_HUMAN	roundabout homolog 4, magic roundabout	313	Fibronectin type-III 1.				angiogenesis|cell differentiation	integral to membrane	receptor activity			ovary(1)|skin(1)	2	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0301)		CCCCAGTGGAGGCCTCCAAGCT	0.653													22	36					0	0	1	0	0
ZBTB44	29068	broad.mit.edu	37	11	130130907	130130907	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:130130907G>A	uc001qga.2	-	2	1256	c.862C>T	c.(862-864)CGG>TGG	p.R288W	ZBTB44_uc001qgb.3_Missense_Mutation_p.R288W|ZBTB44_uc001qfx.2_RNA|ZBTB44_uc001qgc.1_Missense_Mutation_p.R288W|ZBTB44_uc001qfz.2_Missense_Mutation_p.R288W	NM_014155	NP_054874	Q8NCP5	ZBT44_HUMAN	zinc finger and BTB domain containing 44	288					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0192)|Lung(977;0.235)		ACTTTGACCCGGACATCTTCT	0.478													46	91					0	0	1	0	0
ZBTB44	29068	broad.mit.edu	37	11	130130909	130130909	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr11:130130909A>G	uc001qga.2	-	2	1254	c.860T>C	c.(859-861)GTC>GCC	p.V287A	ZBTB44_uc001qgb.3_Missense_Mutation_p.V287A|ZBTB44_uc001qfx.2_RNA|ZBTB44_uc001qgc.1_Missense_Mutation_p.V287A|ZBTB44_uc001qfz.2_Missense_Mutation_p.V287A	NM_014155	NP_054874	Q8NCP5	ZBT44_HUMAN	zinc finger and BTB domain containing 44	287					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0192)|Lung(977;0.235)		TTTGACCCGGACATCTTCTTC	0.468													45	92					0	0	1	0	0
IQSEC3	440073	broad.mit.edu	37	12	283916	283916	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:283916C>T	uc001qhw.1	+	11	2363	c.2357C>T	c.(2356-2358)ACC>ATC	p.T786I		NM_015232	NP_056047	Q9UPP2	IQEC3_HUMAN	IQ motif and Sec7 domain 3	1089	Pro-rich.				regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			central_nervous_system(2)|large_intestine(1)|skin(1)	4	all_cancers(10;0.016)|all_lung(10;0.0222)|all_epithelial(11;0.0262)|Lung NSC(10;0.031)		OV - Ovarian serous cystadenocarcinoma(31;0.00456)	LUAD - Lung adenocarcinoma(1;0.172)|Lung(1;0.179)		CCCCCGGGCACCCTGGTGCAG	0.706													6	16					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2595325	2595325	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:2595325C>T	uc009zdu.1	+	6	1126	c.813C>T	c.(811-813)ATC>ATT	p.I271I	CACNA1C_uc009zdv.1_Silent_p.I271I|CACNA1C_uc001qkb.2_Silent_p.I271I|CACNA1C_uc001qkc.2_Silent_p.I271I|CACNA1C_uc001qke.2_Silent_p.I271I|CACNA1C_uc001qkf.2_Silent_p.I271I|CACNA1C_uc001qjz.2_Silent_p.I271I|CACNA1C_uc001qkd.2_Silent_p.I271I|CACNA1C_uc001qkg.2_Silent_p.I271I|CACNA1C_uc009zdw.1_Silent_p.I271I|CACNA1C_uc001qkh.2_Silent_p.I271I|CACNA1C_uc001qkl.2_Silent_p.I271I|CACNA1C_uc001qkn.2_Silent_p.I271I|CACNA1C_uc001qko.2_Silent_p.I271I|CACNA1C_uc001qkp.2_Silent_p.I271I|CACNA1C_uc001qkr.2_Silent_p.I271I|CACNA1C_uc001qku.2_Silent_p.I271I|CACNA1C_uc001qkq.2_Silent_p.I271I|CACNA1C_uc001qks.2_Silent_p.I271I|CACNA1C_uc001qkt.2_Silent_p.I271I|CACNA1C_uc001qka.1_5'UTR|CACNA1C_uc001qki.1_Silent_p.I7I|CACNA1C_uc001qkj.1_Silent_p.I7I|CACNA1C_uc001qkk.1_Silent_p.I7I|CACNA1C_uc001qkm.1_Silent_p.I7I	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	271	Helical; Name=S5 of repeat I; (Potential).|I.				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	TGCTGCACATCGCCCTGCTTG	0.562													11	18					0	0	1	0	0
AKAP3	10566	broad.mit.edu	37	12	4737001	4737001	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:4737001G>A	uc001qnb.3	-	4	1296	c.1067C>T	c.(1066-1068)TCG>TTG	p.S356L		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	356					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						TTTCACAGCCGAGACAAACTG	0.473													23	60					0	0	1	0	0
TNFRSF1A	7132	broad.mit.edu	37	12	6438571	6438571	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:6438571G>A	uc001qnu.2	-	10	1556	c.1275C>T	c.(1273-1275)CTC>CTT	p.L425L	TNFRSF1A_uc001qnt.2_Silent_p.L317L|TNFRSF1A_uc010sey.1_Silent_p.L193L|TNFRSF1A_uc010sez.1_Silent_p.L317L|TNFRSF1A_uc009zek.2_Silent_p.L382L	NM_001065	NP_001056	P19438	TNR1A_HUMAN	tumor necrosis factor receptor 1 precursor	425	Death.|Cytoplasmic (Potential).				apoptosis|cellular response to mechanical stimulus|induction of apoptosis by extracellular signals|inflammatory response|interspecies interaction between organisms|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of inflammatory response|positive regulation of transcription from RNA polymerase II promoter|prostaglandin metabolic process	extracellular region|integral to plasma membrane|membrane raft	tumor necrosis factor receptor activity			lung(2)|skin(1)	3						CCATGTCGCGGAGCACGCGTC	0.597													3	3					0	0	1	0	0
APOBEC1	339	broad.mit.edu	37	12	7805245	7805245	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:7805245G>A	uc001qtb.2	-	3	265	c.231C>T	c.(229-231)CAC>CAT	p.H77H	APOBEC1_uc001qtc.2_Silent_p.H32H|APOBEC1_uc010sgf.1_Silent_p.H77H	NM_001644	NP_001635	P41238	ABEC1_HUMAN	apolipoprotein B mRNA editing enzyme	77					cytidine to uridine editing|DNA demethylation|lipid metabolic process|mRNA modification|mRNA processing|negative regulation of methylation-dependent chromatin silencing	nucleoplasm	cytidine deaminase activity|RNA binding|zinc ion binding				0						TCATGGATGGGTGAAAATCTC	0.488													9	33					0	0	1	0	0
APOBEC1	339	broad.mit.edu	37	12	7805253	7805253	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:7805253C>T	uc001qtb.2	-	3	257	c.223G>A	c.(223-225)GAT>AAT	p.D75N	APOBEC1_uc001qtc.2_Missense_Mutation_p.D30N|APOBEC1_uc010sgf.1_Missense_Mutation_p.D75N	NM_001644	NP_001635	P41238	ABEC1_HUMAN	apolipoprotein B mRNA editing enzyme	75					cytidine to uridine editing|DNA demethylation|lipid metabolic process|mRNA modification|mRNA processing|negative regulation of methylation-dependent chromatin silencing	nucleoplasm	cytidine deaminase activity|RNA binding|zinc ion binding				0						GGGTGAAAATCTCTTTCTGAC	0.478													11	26					0	0	1	0	0
PLCZ1	89869	broad.mit.edu	37	12	18889240	18889240	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:18889240C>T	uc010sid.1	-	3	241	c.50G>A	c.(49-51)GGA>GAA	p.G17E	PLCZ1_uc001rdv.3_5'UTR|PLCZ1_uc001rdw.3_5'UTR|CAPZA3_uc001rdy.2_5'Flank	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	17					intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					GTTAATTTTTCCACCTCTGAA	0.308													9	24					0	0	1	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891655	18891655	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:18891655G>A	uc001rdy.2	+	1	611	c.453G>A	c.(451-453)TTG>TTA	p.L151L	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	151					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				AGGAGTACTTGATAGCTTGCA	0.388													10	65					0	0	1	0	0
DENND5B	160518	broad.mit.edu	37	12	31545314	31545314	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:31545314G>A	uc001rki.1	-	19	3539	c.3353C>T	c.(3352-3354)ACC>ATC	p.T1118I	DENND5B_uc001rkh.1_Missense_Mutation_p.T1153I|DENND5B_uc009zjq.1_Intron	NM_144973	NP_659410	Q6ZUT9	DEN5B_HUMAN	DENN/MADD domain containing 5B	1118	RUN 2.					integral to membrane				ovary(1)|central_nervous_system(1)	2						CAGCAACACGGTGAGGCTTCC	0.468													7	50					0	0	1	0	0
PKP2	5318	broad.mit.edu	37	12	33031966	33031966	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:33031966C>T	uc001rlj.3	-	2	339	c.224G>A	c.(223-225)GGA>GAA	p.G75E	PKP2_uc001rlk.3_Missense_Mutation_p.G75E|PKP2_uc010skj.1_Missense_Mutation_p.G75E	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	75					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					GTGAAGATTTCCTGCAATCAA	0.333													6	36					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43826148	43826148	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:43826148C>T	uc010skx.1	-	21	3055	c.3055G>A	c.(3055-3057)GAA>AAA	p.E1019K	ADAMTS20_uc001rno.1_Missense_Mutation_p.E173K|ADAMTS20_uc001rnp.1_Missense_Mutation_p.E173K	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1019	TSP type-1 4.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		CAGGAAAATTCATTGCAATTC	0.403													10	36					0	0	1	0	0
SLC38A1	81539	broad.mit.edu	37	12	46591825	46591825	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:46591825C>T	uc001rpa.2	-	15	1399	c.1141G>A	c.(1141-1143)GAA>AAA	p.E381K	SLC38A1_uc001rpb.2_Missense_Mutation_p.E381K|SLC38A1_uc001rpc.2_Missense_Mutation_p.E381K|SLC38A1_uc001rpd.2_Missense_Mutation_p.E381K|SLC38A1_uc001rpe.2_Missense_Mutation_p.E381K|SLC38A1_uc009zkj.1_Missense_Mutation_p.E381K	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	381	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			TTAGCCAGTTCAAATAAAGAT	0.368													6	23					0	0	1	0	0
COL2A1	1280	broad.mit.edu	37	12	48372385	48372385	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:48372385G>A	uc001rqu.2	-	42	3071	c.2890C>T	c.(2890-2892)CCC>TCC	p.P964S	COL2A1_uc001rqt.2_5'Flank|COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Missense_Mutation_p.P895S	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	964	Triple-helical region.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	CTTACAGAGGGACCGTCATCT	0.667													13	26					0	0	1	0	0
OR8S1	341568	broad.mit.edu	37	12	48920040	48920040	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:48920040G>A	uc010slu.1	+	1	626	c.626G>A	c.(625-627)GGA>GAA	p.G209E		NM_001005203	NP_001005203	Q8NH09	OR8S1_HUMAN	olfactory receptor, family 8, subfamily S,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CATGGGCTGGGAAACTTCCTT	0.522													23	47					0	0	1	0	0
DIP2B	57609	broad.mit.edu	37	12	51138511	51138512	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:51138511_51138512GG>AA	uc001rwv.2	+	38	4776_4777	c.4620_4621GG>AA	c.(4618-4623)GTGGAC>GTAAAC	p.D1541N	DIP2B_uc009zlt.2_Missense_Mutation_p.D971N	NM_173602	NP_775873	Q9P265	DIP2B_HUMAN	DIP2 disco-interacting protein 2 homolog B	1541						nucleus	catalytic activity|transcription factor binding			ovary(4)|breast(1)|pancreas(1)	6						TGGTTGTGGTGGACCCAGGTGT	0.545													10	53					0	0	1	0	0
CSRNP2	81566	broad.mit.edu	37	12	51458059	51458059	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:51458059G>A	uc001rxu.1	-	5	1400	c.1102C>T	c.(1102-1104)CCC>TCC	p.P368S		NM_030809	NP_110436	Q9H175	CSRN2_HUMAN	TGF-beta induced apoptosis protein 12	368					apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						AGCTCTTCGGGGACAGCCAGA	0.612													25	68					0	0	1	0	0
ANKRD33	341405	broad.mit.edu	37	12	52283227	52283227	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:52283227G>A	uc001rzf.3	+	4	772	c.193G>A	c.(193-195)GGG>AGG	p.G65R	ANKRD33_uc001rzh.3_3'UTR|ANKRD33_uc001rzd.2_Missense_Mutation_p.G200R|ANKRD33_uc001rze.2_Missense_Mutation_p.G65R|ANKRD33_uc001rzg.3_5'UTR|ANKRD33_uc001rzi.3_Missense_Mutation_p.G65R	NM_001130015	NP_001123487	Q7Z3H0	ANR33_HUMAN	ankyrin repeat domain 33 isoform 1	65	ANK 2.										0				BRCA - Breast invasive adenocarcinoma(357;0.0969)		GGACCAGCGGGGGCTCACGGC	0.657													15	35					0	0	1	0	0
KRT80	144501	broad.mit.edu	37	12	52585569	52585569	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:52585569C>T	uc001rzx.2	-	1	216	c.118G>A	c.(118-120)GGC>AGC	p.G40S	KRT80_uc001rzy.2_Missense_Mutation_p.G40S	NM_182507	NP_872313	Q6KB66	K2C80_HUMAN	keratin 80 isoform a	40	Head.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.108)		GAGCTGAAGCCCGGCCCGGGG	0.677													13	15					0	0	1	0	0
OR9K2	441639	broad.mit.edu	37	12	55524362	55524362	+	Silent	SNP	G	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:55524362G>T	uc010spe.1	+	1	810	c.810G>T	c.(808-810)CTG>CTT	p.L270L		NM_001005243	NP_001005243	Q8NGE7	OR9K2_HUMAN	olfactory receptor, family 9, subfamily K,	270	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						GCTCTCACCTGGGAGTTGTGA	0.423													13	110					0.000151284	0.000152167	1	1	0
ITGA7	3679	broad.mit.edu	37	12	56092216	56092216	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:56092216G>A	uc001shh.2	-	7	1375	c.1155C>T	c.(1153-1155)TTC>TTT	p.F385F	ITGA7_uc001shg.2_Silent_p.F381F|ITGA7_uc010sps.1_Silent_p.F288F|ITGA7_uc009znw.2_5'Flank|ITGA7_uc009znx.2_Silent_p.F268F	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	425	FG-GAP 6.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						GGCTGATCCCGAACATGGAGT	0.622													15	25					0	0	1	0	0
SMARCC2	6601	broad.mit.edu	37	12	56571847	56571847	+	Silent	SNP	G	C	C	rs142117181	by1000genomes	TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:56571847G>C	uc001skb.2	-	15	1447	c.1341C>G	c.(1339-1341)CCC>CCG	p.P447P	SMARCC2_uc001skd.2_Silent_p.P447P|SMARCC2_uc001ska.2_Silent_p.P447P|SMARCC2_uc001skc.2_Silent_p.P447P|SMARCC2_uc010sqf.1_Silent_p.P336P	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	447	SWIRM.				chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			TGAAGAACTCGGGGAGAGCCC	0.512													7	21					0	0	1	0	0
CPM	1368	broad.mit.edu	37	12	69250346	69250346	+	Missense_Mutation	SNP	A	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:69250346A>C	uc001sup.2	-	9	1264	c.1203T>G	c.(1201-1203)GAT>GAG	p.D401E	CPM_uc001sur.2_Missense_Mutation_p.D401E|CPM_uc001suq.2_Missense_Mutation_p.D401E	NM_198320	NP_938079	P14384	CBPM_HUMAN	carboxypeptidase M precursor	401					anatomical structure morphogenesis|proteolysis	anchored to membrane|cytoplasm|nucleus|plasma membrane	metallocarboxypeptidase activity|zinc ion binding				0	all_epithelial(5;1.09e-35)|Lung NSC(4;1.47e-33)|all_lung(4;1.02e-31)|Breast(13;1.59e-06)		all cancers(2;2.69e-50)|GBM - Glioblastoma multiforme(2;7.34e-41)|BRCA - Breast invasive adenocarcinoma(5;5.38e-10)|Lung(24;4.61e-05)|LUAD - Lung adenocarcinoma(15;0.000376)|STAD - Stomach adenocarcinoma(21;0.00372)|Kidney(9;0.143)			CTGGGATAGAATCCAATTGCC	0.398													51	80					0	0	1	0	0
LGR5	8549	broad.mit.edu	37	12	71977842	71977842	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:71977842C>T	uc001swl.2	+	18	2100	c.2052C>T	c.(2050-2052)ATC>ATT	p.I684I	LGR5_uc001swm.2_Silent_p.I660I|LGR5_uc001swn.1_Intron	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	684	Helical; Name=4; (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						TGAAAGTAATCATTTTGCTCT	0.522													45	179					0	0	1	0	0
KCNC2	3747	broad.mit.edu	37	12	75444290	75444290	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:75444290G>T	uc001sxg.1	-	3	2039	c.1495C>A	c.(1495-1497)CCT>ACT	p.P499T	KCNC2_uc009zry.2_Missense_Mutation_p.P499T|KCNC2_uc001sxe.2_Missense_Mutation_p.P499T|KCNC2_uc001sxf.2_Missense_Mutation_p.P499T|KCNC2_uc010stw.1_Missense_Mutation_p.P499T	NM_139137	NP_631875	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	499	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						TGAGGAGCAGGAGGGATGTGC	0.443													11	69					3.86212e-05	3.91204e-05	1	1	0
KITLG	4254	broad.mit.edu	37	12	88926236	88926236	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:88926236G>A	uc001tav.2	-	3	357	c.174C>T	c.(172-174)GTC>GTT	p.V58V	KITLG_uc001taw.2_Silent_p.V58V|KITLG_uc009zso.1_RNA	NM_000899	NP_000890	P21583	SCF_HUMAN	KIT ligand isoform b precursor	58	Extracellular (Potential).				cell adhesion|cell proliferation|hemopoiesis|male gonad development|positive regulation of DNA replication|signal transduction	cytoplasm|cytoskeleton|integral to membrane|plasma membrane	growth factor activity|identical protein binding|stem cell factor receptor binding			ovary(1)	1						CCATCCCGGGGACATATTTGA	0.323									Testicular_Cancer_Familial_Clustering_of				21	64					0	0	1	0	0
FGD6	55785	broad.mit.edu	37	12	95566470	95566471	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:95566470_95566471GG>AA	uc001tdp.3	-	3	2715_2716	c.2491_2492CC>TT	c.(2491-2493)CCC>TTC	p.P831F	FGD6_uc009zsx.2_5'UTR	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	831					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						CTCATCAGAGGGAAGGTCACCA	0.441													24	78					0	0	1	0	0
MYL2	4633	broad.mit.edu	37	12	111356938	111356938	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:111356938G>A	uc001try.3	-	2	134	c.63C>T	c.(61-63)TTC>TTT	p.F21F	MYL2_uc001trx.3_Silent_p.F2F	NM_000432	NP_000423	P10916	MLRV_HUMAN	slow cardiac myosin regulatory light chain 2	21					cardiac myofibril assembly|heart contraction|muscle filament sliding|negative regulation of cell growth|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	cytosol|myosin complex|sarcomere	actin monomer binding|calcium ion binding|myosin heavy chain binding|structural constituent of muscle			ovary(1)	1						GGGTCTGTTCGAACATGGAGA	0.507													5	36					0	0	1	0	0
TRAFD1	10906	broad.mit.edu	37	12	112572540	112572540	+	Splice_Site	SNP	A	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:112572540A>T	uc001ttp.2	+	3	134	c.48_splice	c.e3-2	p.C16_splice	TRAFD1_uc001tto.2_Splice_Site_p.C16_splice|TRAFD1_uc009zwb.2_Splice_Site_p.C16_splice|TRAFD1_uc010syj.1_Splice_Site	NM_006700	NP_006691	O14545	TRAD1_HUMAN	TRAF-type zinc finger domain containing 1						negative regulation of innate immune response	intracellular	protein binding|zinc ion binding				0						CTATTTCCGTAGCAAAAAAGA	0.393													19	57					0	0	1	0	0
C12orf51	283450	broad.mit.edu	37	12	112646400	112646400	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:112646400G>A	uc009zwc.2	-	44	6654	c.6636C>T	c.(6634-6636)GTC>GTT	p.V2212V	C12orf51_uc001ttr.1_Silent_p.V387V	NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						AGCTGAGCTCGACTTTATAAT	0.388													21	46					0	0	1	0	0
C12orf51	283450	broad.mit.edu	37	12	112648052	112648052	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:112648052G>A	uc009zwc.2	-	43	6386	c.6368C>T	c.(6367-6369)ACC>ATC	p.T2123I	C12orf51_uc001ttr.1_Missense_Mutation_p.T298I	NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						TCGGGTTTTGGTGTTCTGGAA	0.512													36	104					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117655959	117655959	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:117655959C>T	uc001twm.1	-	28	4867	c.4181G>A	c.(4180-4182)CGA>CAA	p.R1394Q		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	1394					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CTCATGGTATCGGTTGTCATC	0.473													71	199					0	0	1	0	0
CIT	11113	broad.mit.edu	37	12	120151077	120151077	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:120151077C>T	uc001txi.1	-	34	4437	c.4384G>A	c.(4384-4386)GGC>AGC	p.G1462S	CIT_uc001txh.1_Missense_Mutation_p.G981S|CIT_uc001txj.1_Missense_Mutation_p.G1504S	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	1462	PH.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		CTGTCCCAGCCTTGCTGTCCT	0.448													56	185					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	126004054	126004055	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr12:126004054_126004055GG>AA	uc001uhe.1	+	4	1169_1170	c.1161_1162GG>AA	c.(1159-1164)GGGGCC>GGAACC	p.A388T		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	388	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		ACCTGGCTGGGGCCCAGCAGAT	0.49													19	70					0	0	1	0	0
RXFP2	122042	broad.mit.edu	37	13	32365998	32365998	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr13:32365998C>T	uc001utt.2	+	15	1272	c.1201C>T	c.(1201-1203)CCC>TCC	p.P401S	RXFP2_uc010aba.2_Missense_Mutation_p.P360S	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	401	Extracellular (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		AATATGTATGCCCTTGACGGA	0.393													28	72					0	0	1	0	0
NBEA	26960	broad.mit.edu	37	13	36241700	36241700	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr13:36241700C>T	uc001uvb.2	+	56	8797	c.8591C>T	c.(8590-8592)TCA>TTA	p.S2864L	NBEA_uc010abi.2_Missense_Mutation_p.S1522L|NBEA_uc010tef.1_Missense_Mutation_p.S657L|NBEA_uc001uvd.2_Missense_Mutation_p.S442L	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2864	WD 4.					cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		ATCAATGATTCAACACGGGTA	0.373													39	113					0	0	1	0	0
MRPS31	10240	broad.mit.edu	37	13	41331087	41331087	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr13:41331087C>T	uc001uxm.3	-	4	737	c.662G>A	c.(661-663)AGA>AAA	p.R221K		NM_005830	NP_005821	Q92665	RT31_HUMAN	mitochondrial ribosomal protein S31 precursor	221						mitochondrion|ribosome	protein domain specific binding				0		Lung NSC(96;3.55e-06)|Breast(139;0.00394)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(188;0.194)		all cancers(112;1.52e-08)|Epithelial(112;7.63e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000192)|GBM - Glioblastoma multiforme(144;0.00233)|BRCA - Breast invasive adenocarcinoma(63;0.0706)		AAGCTCTGGTCTTGAACGAAC	0.368													25	46					0	0	1	0	0
KIAA0564	23078	broad.mit.edu	37	13	42393388	42393388	+	Missense_Mutation	SNP	A	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr13:42393388A>C	uc001uyj.2	-	15	1905	c.1835T>G	c.(1834-1836)GTG>GGG	p.V612G	KIAA0564_uc001uyk.2_Missense_Mutation_p.V612G	NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	612						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		TTCACTTTTCACAAGTGGTTT	0.388													11	28					0	0	1	0	0
NEK5	341676	broad.mit.edu	37	13	52676362	52676362	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr13:52676362G>A	uc001vge.2	-	10	816	c.676C>T	c.(676-678)CCG>TCG	p.P226S	NEK5_uc001vgf.2_Missense_Mutation_p.P226S	NM_199289	NP_954983	Q6P3R8	NEK5_HUMAN	NIMA-related kinase 5	226	Protein kinase.						ATP binding|metal ion binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)	1		Breast(56;0.00173)|Lung NSC(96;0.0168)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;3.7e-08)		GAAAACCCCGGAGATATTGGG	0.423													51	130					0	0	1	0	0
PCDH8	5100	broad.mit.edu	37	13	53422069	53422069	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr13:53422069C>T	uc001vhi.2	-	1	706	c.503G>A	c.(502-504)GGG>GAG	p.G168E	PCDH8_uc001vhj.2_Missense_Mutation_p.G168E	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	168	Extracellular (Potential).|Cadherin 2.				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		GGTCTGCAGCCCGTTGGCGCC	0.716													11	9					0	0	1	0	0
DACH1	1602	broad.mit.edu	37	13	72063197	72063197	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr13:72063197C>T	uc010thn.1	-	8	2077	c.1654G>A	c.(1654-1656)GGT>AGT	p.G552S	DACH1_uc010tho.1_Missense_Mutation_p.G404S|DACH1_uc010thp.1_Missense_Mutation_p.G350S	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	604					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		GATGGAAAACCTGGAGGCAGT	0.468													37	136					0	0	1	0	0
POU4F1	5457	broad.mit.edu	37	13	79175704	79175704	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr13:79175704G>C	uc001vkv.2	-	2	1340	c.1106C>G	c.(1105-1107)TCC>TGC	p.S369C	uc001vku.1_Intron	NM_006237	NP_006228	Q01851	PO4F1_HUMAN	POU domain, class 4, transcription factor 1	369	Homeobox.				axonogenesis|regulation of transcription from RNA polymerase II promoter|synapse assembly	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.0848)		GBM - Glioblastoma multiforme(99;0.129)		GGCCTCGAGGGAGCGCTTCTC	0.652													10	84					0	0	1	0	0
NALCN	259232	broad.mit.edu	37	13	101707749	101707749	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr13:101707749G>A	uc001vox.1	-	44	5304	c.5115C>T	c.(5113-5115)CCC>CCT	p.P1705P		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1705	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					CGTCAGTCATGGGGTTCATTT	0.502													30	132					0	0	1	0	0
KDELC1	79070	broad.mit.edu	37	13	103438659	103438659	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr13:103438659G>C	uc001vpq.3	-	9	1798	c.1414C>G	c.(1414-1416)CAA>GAA	p.Q472E	KDELC1_uc001vpr.3_Missense_Mutation_p.Q253E	NM_024089	NP_076994	Q6UW63	KDEL1_HUMAN	KDEL (Lys-Asp-Glu-Leu) containing 1 precursor	472						endoplasmic reticulum lumen				ovary(1)	1	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					TCTCGGATTTGGGGCTCACTC	0.423													46	88					0	0	1	0	0
ARHGEF7	8874	broad.mit.edu	37	13	111935541	111935541	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr13:111935541C>T	uc001vrs.2	+	17	2094	c.1844C>T	c.(1843-1845)CCG>CTG	p.P615L	ARHGEF7_uc001vrr.2_Missense_Mutation_p.P594L|ARHGEF7_uc001vrt.2_Missense_Mutation_p.P565L|ARHGEF7_uc010tjn.1_RNA|ARHGEF7_uc001vru.1_Missense_Mutation_p.P437L|ARHGEF7_uc001vrv.3_Missense_Mutation_p.P437L|ARHGEF7_uc001vrw.3_Missense_Mutation_p.P437L|ARHGEF7_uc001vrx.3_Missense_Mutation_p.P437L|ARHGEF7_uc010tjo.1_Missense_Mutation_p.P512L|ARHGEF7_uc010tjp.1_Missense_Mutation_p.P359L|ARHGEF7_uc001vry.1_Missense_Mutation_p.P31L|uc001vrz.1_5'Flank	NM_001113511	NP_001106983	Q14155	ARHG7_HUMAN	PAK-interacting exchange factor beta isoform c	615					apoptosis|epidermal growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_lung(23;3.96e-05)|Lung NSC(43;0.00156)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.188)			AAGCCCGCGCCGCTGACGCCC	0.682													3	6					0	0	1	0	0
POTEG	404785	broad.mit.edu	37	14	19553689	19553689	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr14:19553689G>A	uc001vuz.1	+	1	325	c.273G>A	c.(271-273)ATG>ATA	p.M91I	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	91										ovary(1)	1						ACTCTGCTATGAAGACACTCA	0.622													28	497					0	0	1	0	0
P704P	641455	broad.mit.edu	37	14	20019948	20019948	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr14:20019948C>T	uc001vwc.3	-	1	325	c.273G>A	c.(271-273)ATG>ATA	p.M91I	P704P_uc001vwb.3_RNA	NM_001145442	NP_001138914	A6NI47	POTEM_HUMAN	prostate-specific P704P	91											0						TGAGTGTCTTCATAGCAGAGT	0.632													39	511					0	0	1	0	0
OR4K2	390431	broad.mit.edu	37	14	20345115	20345115	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr14:20345115C>T	uc001vwh.1	+	1	689	c.689C>T	c.(688-690)TCC>TTC	p.S230F		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CATCATTCTTCCAGAGGATCA	0.383													20	350					0	0	1	0	0
OR4K13	390433	broad.mit.edu	37	14	20502327	20502327	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr14:20502327G>A	uc010tkz.1	-	1	591	c.591C>T	c.(589-591)CTC>CTT	p.L197L		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	197	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		CAATGACCAGGAGCTGTAGGA	0.483													16	69					0	0	1	0	0
OR4K17	390436	broad.mit.edu	37	14	20586066	20586066	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr14:20586066G>A	uc001vwo.1	+	1	501	c.501G>A	c.(499-501)ATG>ATA	p.M167I		NM_001004715	NP_001004715	Q8NGC6	OR4KH_HUMAN	olfactory receptor, family 4, subfamily K,	139	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.77e-06)	GBM - Glioblastoma multiforme(265;0.0144)		TGACCATCATGAACAAGAAGG	0.458													11	52					0	0	1	0	0
CHD8	57680	broad.mit.edu	37	14	21897468	21897468	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr14:21897468G>A	uc001was.1	-	3	127	c.33C>T	c.(31-33)GTC>GTT	p.V11V	CHD8_uc001war.1_5'UTR	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	290					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		GCTGCTGGAGGACCAGGGTGA	0.478													5	37					0	0	1	0	0
OR4E2	26686	broad.mit.edu	37	14	22133644	22133644	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr14:22133644C>T	uc010tmd.1	+	1	348	c.348C>T	c.(346-348)ATC>ATT	p.I116I		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	116	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		TTCTGCTGATCATTGTGGCGT	0.453													36	138					0	0	1	0	0
AKAP6	9472	broad.mit.edu	37	14	33293208	33293208	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr14:33293208C>T	uc001wrq.2	+	13	6359	c.6189C>T	c.(6187-6189)ATC>ATT	p.I2063I		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	2063	PKA-RII subunit binding domain.				protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		TTAAGGAAATCATTGACATGG	0.408													26	48					0	0	1	0	0
SLC35F4	341880	broad.mit.edu	37	14	58055936	58055936	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr14:58055936G>A	uc001xdb.1	-	3	693	c.693C>T	c.(691-693)TTC>TTT	p.F231F	SLC35F4_uc010aoz.1_RNA|SLC35F4_uc010apa.1_Silent_p.F72F	NM_001080455	NP_001073924			solute carrier family 35, member F4											ovary(2)	2						AAACCTACCTGAATTTTTTCA	0.338													14	30					0	0	1	0	0
FAM71D	161142	broad.mit.edu	37	14	67674919	67674919	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr14:67674919G>A	uc001xja.1	+	6	1167	c.913G>A	c.(913-915)GAA>AAA	p.E305K	FAM71D_uc010aqn.1_RNA	NM_173526	NP_775797	Q8N9W8	FA71D_HUMAN	hypothetical protein LOC161142	305										ovary(1)	1		all_hematologic(31;0.0116)		all cancers(60;0.00107)|BRCA - Breast invasive adenocarcinoma(234;0.00993)|OV - Ovarian serous cystadenocarcinoma(108;0.012)		ATTTTTAAAGGAAAAATTGAA	0.358													4	38					0	0	1	0	0
RGS6	9628	broad.mit.edu	37	14	72431523	72431523	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr14:72431523C>T	uc001xna.3	+	2	538	c.15C>T	c.(13-15)TCC>TCT	p.S5S	RGS6_uc010ttn.1_Silent_p.S5S|RGS6_uc001xmx.3_Silent_p.S5S|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Silent_p.S5S	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	5					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		CTCAAGGATCCGGGGATCAAA	0.463													29	45					0	0	1	0	0
POMT2	29954	broad.mit.edu	37	14	77762534	77762534	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr14:77762534G>A	uc001xti.2	-	9	1290	c.1089C>T	c.(1087-1089)CCC>CCT	p.P363P	POMT2_uc001xth.1_Silent_p.P61P	NM_013382	NP_037514	Q9UKY4	POMT2_HUMAN	protein-O-mannosyltransferase 2	363	MIR 1.				protein O-linked glycosylation	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity|metal ion binding			ovary(1)	1			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0292)		CAATGCCCTCGGGGTAGAGGT	0.483													4	8					0	0	1	0	0
C14orf102	55051	broad.mit.edu	37	14	90745472	90745472	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr14:90745472G>A	uc001xyi.1	-	13	3334	c.3303C>T	c.(3301-3303)TCC>TCT	p.S1101S	C14orf102_uc010atp.1_Silent_p.S606S|C14orf102_uc001xyj.1_Silent_p.S870S|C14orf102_uc001xyk.1_Silent_p.S293S	NM_017970	NP_060440	Q9H7Z3	CN102_HUMAN	hypothetical protein LOC55051 isoform 1	1101	HAT 5.						protein binding			ovary(2)|lung(1)	3		all_cancers(154;0.118)		COAD - Colon adenocarcinoma(157;0.218)		TATTTCCTAAGGAAACCTGAG	0.468													27	146					0	0	1	0	0
TC2N	123036	broad.mit.edu	37	14	92251638	92251638	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr14:92251638C>T	uc001xzu.3	-	11	1421	c.1230G>A	c.(1228-1230)CTG>CTA	p.L410L	TC2N_uc001xzt.3_Silent_p.L410L|TC2N_uc010auc.2_Silent_p.L346L|TC2N_uc001xzv.3_Silent_p.L410L	NM_001128595	NP_001122067	Q8N9U0	TAC2N_HUMAN	tandem C2 domains, nuclear	410	C2.					nucleus				upper_aerodigestive_tract(1)	1				COAD - Colon adenocarcinoma(157;0.218)		TGGAGGCCTTCAGTAAGCGTG	0.343													71	220					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94083625	94083625	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr14:94083625A>G	uc001ybv.1	+	26	3817	c.3734A>G	c.(3733-3735)AAG>AGG	p.K1245R	KIAA1409_uc001ybs.1_Missense_Mutation_p.K1223R	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1400						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		ATGTGGTTGAAGGCCTTGCTT	0.498													9	67					0	0	1	0	0
SERPINA5	5104	broad.mit.edu	37	14	95058429	95058429	+	Silent	SNP	G	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr14:95058429G>T	uc001ydm.2	+	6	1284	c.1074G>T	c.(1072-1074)TCG>TCT	p.S358S	SERPINA3_uc001ydo.3_5'UTR	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	358					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	TGGACGAGTCGGGAACCAGAG	0.572													31	248					2.08457e-15	2.13916e-15	1	1	0
VRK1	7443	broad.mit.edu	37	14	97319244	97319244	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr14:97319244C>T	uc001yft.2	+	6	557	c.451C>T	c.(451-453)CGG>TGG	p.R151W		NM_003384	NP_003375	Q99986	VRK1_HUMAN	vaccinia related kinase 1	151	Protein kinase.					cytoplasm|nucleolus	ATP binding|protein binding|protein serine/threonine kinase activity			large_intestine(1)|stomach(1)	2		Melanoma(154;0.155)		COAD - Colon adenocarcinoma(157;0.234)		AAGGTTTTCTCGGAAAACTGT	0.338													4	37					0	0	1	0	0
BCL11B	64919	broad.mit.edu	37	14	99723898	99723898	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr14:99723898C>T	uc001yga.2	-	2	604	c.337G>A	c.(337-339)GTG>ATG	p.V113M	BCL11B_uc001ygb.2_Missense_Mutation_p.V113M	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	113						nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		CCGATCTCCACCGGCTCGGAC	0.612			T	TLX3	T-ALL								9	82					0	0	1	0	0
BEGAIN	57596	broad.mit.edu	37	14	101004716	101004716	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr14:101004716T>A	uc010txa.1	-	6	1518	c.1372A>T	c.(1372-1374)AAG>TAG	p.K458*	BEGAIN_uc001yhp.2_Nonsense_Mutation_p.K394*|BEGAIN_uc001yhq.2_Nonsense_Mutation_p.K458*	NM_001159531	NP_001153003	Q9BUH8	BEGIN_HUMAN	brain-enriched guanylate kinase-associated	458						cytoplasm|membrane	protein binding				0		Melanoma(154;0.212)				TCGGCCTTCTTGCCCGGGCTG	0.721													6	7					0	0	1	0	0
MIR136	406927	broad.mit.edu	37	14	101351093	101351093	+	RNA	SNP	C	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr14:101351093C>A	hsa-mir-136|MI0000475	+			c.55C>A			RTL1_uc010txj.1_Silent_p.T11T|uc010txk.1_RNA																	0						GCTCCATCATCGTCTCAAATG	0.512													5	32					0.184627	0.184627	1	1	0
WDR20	91833	broad.mit.edu	37	14	102606504	102606504	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr14:102606504C>T	uc001ykz.2	+	1	293	c.244C>T	c.(244-246)CGC>TGC	p.R82C	WDR20_uc001yky.1_5'UTR|WDR20_uc001yla.2_Silent_p.S14S|WDR20_uc001ylb.2_Missense_Mutation_p.R82C|WDR20_uc010txu.1_Missense_Mutation_p.R82C|WDR20_uc001ylc.2_Missense_Mutation_p.R82C|WDR20_uc001yld.2_Missense_Mutation_p.R82C|WDR20_uc001yle.2_Missense_Mutation_p.R82C|WDR20_uc001ylf.2_Missense_Mutation_p.R82C|HSP90AA1_uc001ykv.3_5'Flank	NM_144574	NP_653175	Q8TBZ3	WDR20_HUMAN	WD repeat domain 20 isoform 2	82											0						CAAGGGGGTCCGCAAGGTACC	0.662													10	28					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106725136	106725136	+	RNA	SNP	T	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr14:106725136T>C	uc010tyt.1	-	589		c.18378A>G								Parts of antibodies, mostly variable regions.												0						GCCGCTGATTTCCCCCCCATC	0.582													8	101					0	0	1	0	0
OR4N4	283694	broad.mit.edu	37	15	22382594	22382594	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr15:22382594G>A	uc001yuc.1	+	7	1103	c.122G>A	c.(121-123)GGA>GAA	p.G41E	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Missense_Mutation_p.G41E	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		ATCCTCCCTGGAAATTTTCTC	0.443													79	463					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24922177	24922177	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr15:24922177C>T	uc001ywo.2	+	1	1637	c.1163C>T	c.(1162-1164)ACC>ATC	p.T388I		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	388	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		AAAACAGAGACCATGACAAAC	0.527													28	38					0	0	1	0	0
DISP2	85455	broad.mit.edu	37	15	40661935	40661935	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr15:40661935C>T	uc001zlk.1	+	8	3711	c.3622C>T	c.(3622-3624)CCA>TCA	p.P1208S		NM_033510	NP_277045	A7MBM2	DISP2_HUMAN	dispatched B	1208					smoothened signaling pathway	integral to membrane				ovary(2)	2		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.39e-06)|Colorectal(105;0.0114)|READ - Rectum adenocarcinoma(2;0.0649)|BRCA - Breast invasive adenocarcinoma(123;0.0798)|Lung(196;0.15)|LUAD - Lung adenocarcinoma(183;0.247)		TTCCCGGCCCCCACCAGCCCC	0.647													30	68					0	0	1	0	0
SPTBN5	51332	broad.mit.edu	37	15	42160643	42160643	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr15:42160643G>A	uc001zos.2	-	33	6238	c.5905C>T	c.(5905-5907)CAG>TAG	p.Q1969*	hsa-mir-4310|MI0015840_5'Flank	NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	2004	Spectrin 16.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		TGCCCCAGCTGGGTGGCCTGC	0.682													5	25					0	0	1	0	0
MAP1A	4130	broad.mit.edu	37	15	43819244	43819245	+	Missense_Mutation	DNP	CC	TT	TT	rs145090986	by1000genomes	TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr15:43819244_43819245CC>TT	uc001zrt.2	+	4	6040_6041	c.5573_5574CC>TT	c.(5572-5574)TCC>TTT	p.S1858F		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	1858						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	GCACCCCTCTCCCCAGCTCCTG	0.629													18	21					0	0	1	0	0
ATP8B4	79895	broad.mit.edu	37	15	50212607	50212607	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr15:50212607C>T	uc001zxu.2	-	18	1901	c.1759G>A	c.(1759-1761)GAA>AAA	p.E587K	ATP8B4_uc010ber.2_Missense_Mutation_p.E460K|ATP8B4_uc010ufd.1_Missense_Mutation_p.E397K|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	587	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		CCTGCAAATTCCTGCCAGAGA	0.403													11	27					0	0	1	0	0
MYO5C	55930	broad.mit.edu	37	15	52504022	52504022	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr15:52504022A>T	uc010bff.2	-	35	4338	c.4201T>A	c.(4201-4203)TTC>ATC	p.F1401I	MYO5C_uc010uga.1_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	1401						myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		ACACACATGAACAGGATATGA	0.532													43	108					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54306718	54306718	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr15:54306718G>A	uc002ack.2	+	1	1618	c.1618G>A	c.(1618-1620)GAT>AAT	p.D540N		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	540					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		CTCACAGAGTGATTTTTTCAC	0.368													16	48					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54624244	54624244	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr15:54624244G>A	uc002ack.2	+	13	4429	c.4429G>A	c.(4429-4431)GAA>AAA	p.E1477K	UNC13C_uc002acl.2_Missense_Mutation_p.E307K	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1477					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TGTACAGAGGGAAAAATTCAT	0.259													2	0					0	0	1	0	0
DENND4A	10260	broad.mit.edu	37	15	66048603	66048603	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr15:66048603A>T	uc002aph.2	-	3	564	c.186T>A	c.(184-186)GAT>GAA	p.D62E	DENND4A_uc002api.2_Missense_Mutation_p.D62E|DENND4A_uc002apj.3_Missense_Mutation_p.D62E|DENND4A_uc010ujj.1_Missense_Mutation_p.D62E	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	62	MABP.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						TACAGATATAATCCTGTGGGA	0.383													3	19					0	0	1	0	0
LRRC49	54839	broad.mit.edu	37	15	71276536	71276536	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr15:71276536C>T	uc002asw.2	+	11	1356	c.1109C>T	c.(1108-1110)TCT>TTT	p.S370F	LRRC49_uc002asu.2_Missense_Mutation_p.S360F|LRRC49_uc002asx.2_Missense_Mutation_p.S326F|LRRC49_uc010ukf.1_Missense_Mutation_p.S375F|LRRC49_uc002asy.2_Missense_Mutation_p.S76F|LRRC49_uc002asz.2_Missense_Mutation_p.S342F	NM_017691	NP_060161	Q8IUZ0	LRC49_HUMAN	leucine rich repeat containing 49	370						cytoplasm|microtubule				ovary(1)	1						GATTCTGACTCTCCTCAGGAC	0.413													31	60					0	0	1	0	0
HEXA	3073	broad.mit.edu	37	15	72641531	72641531	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr15:72641531G>A	uc002aun.3	-	8	1082	c.875C>T	c.(874-876)CCC>CTC	p.P292L	uc002aug.2_Intron|CELF6_uc002auk.3_Intron|HEXA_uc010ukn.1_Missense_Mutation_p.P303L|HEXA_uc002auo.3_Missense_Mutation_p.P155L|HEXA_uc010bix.2_Missense_Mutation_p.P292L|HEXA_uc010biy.2_Missense_Mutation_p.P155L|HEXA_uc010uko.1_Missense_Mutation_p.P118L|HEXA_uc010biz.1_RNA	NM_000520	NP_000511	P06865	HEXA_HUMAN	hexosaminidase A preproprotein	292					cell death	lysosome	beta-N-acetylhexosaminidase activity|cation binding|protein heterodimerization activity			ovary(3)|upper_aerodigestive_tract(1)	4						ATTGAGACTGGGATTCACTGG	0.453													24	42					0	0	1	0	0
NEO1	4756	broad.mit.edu	37	15	73470671	73470671	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr15:73470671G>C	uc002avm.3	+	7	1336	c.1194G>C	c.(1192-1194)TTG>TTC	p.L398F	NEO1_uc010ukx.1_Missense_Mutation_p.L398F|NEO1_uc010uky.1_Missense_Mutation_p.L398F|NEO1_uc010ukz.1_5'UTR|NEO1_uc002avn.3_Missense_Mutation_p.L43F	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	398	Extracellular (Potential).|Ig-like C2-type 4.				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						TTCAAGTTTTGGGTCTGGTGA	0.328													14	34					0	0	1	0	0
NEO1	4756	broad.mit.edu	37	15	73562535	73562536	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr15:73562535_73562536CC>TT	uc002avm.3	+	17	2821_2822	c.2679_2680CC>TT	c.(2677-2682)GTCCGA>GTTTGA	p.R894*	NEO1_uc010ukx.1_Nonsense_Mutation_p.R894*|NEO1_uc010uky.1_Nonsense_Mutation_p.R894*|NEO1_uc010ukz.1_Nonsense_Mutation_p.R318*|NEO1_uc002avn.3_Nonsense_Mutation_p.R543*	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	894	Extracellular (Potential).|Fibronectin type-III 5.				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						ACTACACCGTCCGATGGAAAAC	0.45													27	74					0	0	1	0	0
LOC645752	645752	broad.mit.edu	37	15	78211328	78211328	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr15:78211328C>T	uc010bky.2	-	11	1203	c.439G>A	c.(439-441)GAG>AAG	p.E147K		NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						TGCAGCCTCTCACCCTGCTCC	0.592													109	241					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89400231	89400231	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr15:89400231C>T	uc010upo.1	+	12	4789	c.4415C>T	c.(4414-4416)TCT>TTT	p.S1472F	ACAN_uc010upp.1_Missense_Mutation_p.S1472F|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1472					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GGACTTCCTTCTGGAGGAGAA	0.517													50	122					0	0	1	0	0
CACNA1H	8912	broad.mit.edu	37	16	1245554	1245554	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:1245554C>T	uc002cks.2	+	4	782	c.534C>T	c.(532-534)ATC>ATT	p.I178I	CACNA1H_uc002ckt.2_Silent_p.I178I	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	178	I.|Helical; Name=S3 of repeat I; (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	ATTTCTTCATCGTCGTGGCGG	0.607													3	4					0	0	1	0	0
CLCN7	1186	broad.mit.edu	37	16	1511669	1511669	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:1511669C>T	uc002clv.2	-	3	330	c.220G>A	c.(220-222)GAC>AAC	p.D74N	CLCN7_uc002clw.2_Missense_Mutation_p.D50N	NM_001287	NP_001278	P51798	CLCN7_HUMAN	chloride channel 7 isoform a	74	Cytoplasmic (By similarity).					integral to membrane|lysosomal membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Hepatocellular(780;0.0893)				TGTGGAGGGTCCATATCCTGT	0.428													15	20					0	0	1	0	0
PRSS22	64063	broad.mit.edu	37	16	2905675	2905675	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:2905675G>A	uc002cry.1	-	4	525	c.459C>T	c.(457-459)TTC>TTT	p.F153F	PRSS22_uc002crz.1_Intron	NM_022119	NP_071402	Q9GZN4	BSSP4_HUMAN	protease, serine, 22 precursor	153	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			central_nervous_system(1)	1						CCCGCTCTGAGAACTGTATGG	0.602													20	62					0	0	1	0	0
C16orf89	146556	broad.mit.edu	37	16	5112559	5112559	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:5112559G>A	uc010bud.2	-	2	427	c.339C>T	c.(337-339)GTC>GTT	p.V113V	ALG1_uc002cyj.2_Intron|C16orf89_uc002cyk.3_Silent_p.V113V	NM_152459	NP_689672	Q6UX73	CP089_HUMAN	hypothetical protein LOC146556 isoform 1	75						extracellular region				ovary(1)|skin(1)	2						ACTTCTCCCGGACACTTTTTA	0.537													37	67					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9862753	9862753	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:9862753C>T	uc002czo.3	-	12	3098	c.2550G>A	c.(2548-2550)ACG>ACA	p.T850T	GRIN2A_uc010uym.1_Silent_p.T850T|GRIN2A_uc010uyn.1_Silent_p.T693T|GRIN2A_uc002czr.3_Silent_p.T850T	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	850	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AGCACACGCCCGTGAAACAGA	0.577													47	88					0	0	1	0	0
TMC5	79838	broad.mit.edu	37	16	19455411	19455411	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:19455411G>A	uc002dgc.3	+	4	1546	c.797G>A	c.(796-798)AGC>AAC	p.S266N	TMC5_uc010vaq.1_Missense_Mutation_p.S266N|TMC5_uc002dgb.3_Missense_Mutation_p.S266N|TMC5_uc010var.1_Missense_Mutation_p.S266N	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	266	Extracellular (Potential).					integral to membrane				skin(1)	1						AGGGTGCTCAGCAGAACATCT	0.368													23	70					0	0	1	0	0
AQP8	343	broad.mit.edu	37	16	25228656	25228656	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:25228656C>T	uc002doc.2	+	2	232	c.150C>T	c.(148-150)TTC>TTT	p.F50F		NM_001169	NP_001160	O94778	AQP8_HUMAN	aquaporin 8	50	Helical; (Potential).				cellular response to cAMP	integral to plasma membrane	water channel activity			upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(48;0.044)		TCTTCATCTTCATCGGGTGCC	0.642													61	193					0	0	1	0	0
IL21R	50615	broad.mit.edu	37	16	27441414	27441414	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:27441414C>T	uc002doq.1	+	2	255	c.22C>T	c.(22-24)CCC>TCC	p.P8S	IL21R_uc002dor.1_Missense_Mutation_p.P8S|IL21R_uc002dos.1_Missense_Mutation_p.P8S	NM_181078	NP_851564	Q9HBE5	IL21R_HUMAN	interleukin 21 receptor precursor	8					natural killer cell activation	integral to membrane	interleukin-21 receptor activity			ovary(2)|lung(1)|breast(1)	4						CTGGGCCGCCCCCTTGCTCCT	0.721			T	BCL6	NHL								6	22					0	0	1	0	0
SRCAP	10847	broad.mit.edu	37	16	30750003	30750003	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:30750003C>T	uc002dze.1	+	34	9027	c.8642C>T	c.(8641-8643)CCC>CTC	p.P2881L	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.P2676L	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2881	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			GATGAGGCACCCTCATCCACC	0.582													15	41					0	0	1	0	0
IRX6	79190	broad.mit.edu	37	16	55359008	55359008	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:55359008C>T	uc002ehy.2	+	1	538	c.5C>T	c.(4-6)TCC>TTC	p.S2F	IRX6_uc002ehx.2_Missense_Mutation_p.S2F|IRX6_uc010ccb.1_5'Flank	NM_024335	NP_077311	P78412	IRX6_HUMAN	iroquois homeobox protein 6	2						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(5)|ovary(1)	6						GCCACCATGTCCTTCCCACAC	0.627													7	38					0	0	1	0	0
GPR97	222487	broad.mit.edu	37	16	57713204	57713204	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:57713204C>T	uc002emh.2	+	5	711	c.608C>T	c.(607-609)TCT>TTT	p.S203F	GPR97_uc010vhv.1_Missense_Mutation_p.S83F|GPR97_uc010cdd.2_RNA|GPR97_uc010cde.2_5'Flank	NM_170776	NP_740746	Q86Y34	GPR97_HUMAN	G protein-coupled receptor 97 precursor	203	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1						ATCGTCTTCTCTCACCAGCGA	0.637													16	81					0	0	1	0	0
CNGB1	1258	broad.mit.edu	37	16	58001184	58001184	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:58001184C>T	uc002emt.2	-	2	72	c.7G>A	c.(7-9)GGC>AGC	p.G3S	CNGB1_uc010cdh.2_Missense_Mutation_p.G3S|CNGB1_uc002emu.2_Missense_Mutation_p.G3S	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	3					sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						TGGACCCAGCCCAACATCCTG	0.582													5	38					0	0	1	0	0
PRSS54	221191	broad.mit.edu	37	16	58314158	58314158	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:58314158G>A	uc002enf.2	-	7	1553	c.1158C>T	c.(1156-1158)TTC>TTT	p.F386F	PRSS54_uc002eng.2_Silent_p.F386F|PRSS54_uc010vie.1_Silent_p.F287F|CCDC113_uc002ene.2_3'UTR|CCDC113_uc010vid.1_3'UTR	NM_001080492	NP_001073961	Q6PEW0	PRS54_HUMAN	plasma kallikrein-like protein 4 precursor	386					proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						AAACAAGCACGAAGGAAACCA	0.468													7	57					0	0	1	0	0
RLTPR	146206	broad.mit.edu	37	16	67679942	67679942	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:67679942C>T	uc002etn.2	+	4	328	c.208C>T	c.(208-210)CTG>TTG	p.L70L	RLTPR_uc010cel.1_Silent_p.L70L|RLTPR_uc010vjr.1_Silent_p.L70L	NM_001013838	NP_001013860	Q6F5E8	LR16C_HUMAN	RGD motif, leucine rich repeats, tropomodulin	70	LRR 1.									breast(1)	1		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0146)|Epithelial(162;0.0481)|all cancers(182;0.232)		GTTCAGCTACCTGGAGGTCCA	0.627													15	52					0	0	1	0	0
DDX28	55794	broad.mit.edu	37	16	68055781	68055781	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:68055781G>A	uc002evh.1	-	1	2179	c.1325C>T	c.(1324-1326)TCC>TTC	p.S442F	DUS2L_uc002evi.2_5'Flank|DUS2L_uc002evj.2_5'Flank|DUS2L_uc010vkk.1_5'Flank	NM_018380	NP_060850	Q9NUL7	DDX28_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	442	Helicase C-terminal.					mitochondrial nucleoid|nucleus	ATP binding|ATP-dependent helicase activity|RNA binding			skin(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0116)|Epithelial(162;0.0474)|all cancers(182;0.233)		CTTCTGGAAGGACTGGAAGAT	0.512													31	34					0	0	1	0	0
COG8	84342	broad.mit.edu	37	16	69370420	69370420	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:69370420G>A	uc002ewy.2	-	2	644	c.573C>T	c.(571-573)ATC>ATT	p.I191I	COG8_uc002ewz.3_Silent_p.I191I	NM_032382	NP_115758	Q96MW5	COG8_HUMAN	component of oligomeric golgi complex 8	191					protein transport	Golgi membrane|Golgi transport complex				ovary(1)	1						GGATGACAGGGATGGAAGAGT	0.483													10	25					0	0	1	0	0
MARVELD3	91862	broad.mit.edu	37	16	71674371	71674371	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:71674371G>A	uc002fau.2	+	3	737	c.674G>A	c.(673-675)GGA>GAA	p.G225E	PHLPP2_uc002fav.2_Intron|MARVELD3_uc010cge.2_3'UTR	NM_001017967	NP_001017967	Q96A59	MALD3_HUMAN	MARVEL domain containing 3 isoform 1	225	MARVEL.|Cytoplasmic (Potential).					integral to membrane				skin(1)	1		Ovarian(137;0.125)				GTCCTTGCCGGATTCAGTGCC	0.557													24	63					0	0	1	0	0
HP	3240	broad.mit.edu	37	16	72094051	72094051	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:72094051G>A	uc002fbr.3	+	7	527	c.483G>A	c.(481-483)CGG>CGA	p.R161R	TXNL4B_uc010cgl.2_Intron|HP_uc010cgm.2_Silent_p.R102R|HP_uc002fbt.3_Silent_p.R102R|HP_uc002fbu.1_Intron|HP_uc002fbv.3_Silent_p.R72R|HP_uc002fbw.3_5'UTR|HP_uc002fbx.3_5'UTR	NM_005143	NP_005134	P00738	HPT_HUMAN	haptoglobin isoform 1 preproprotein	161					cellular iron ion homeostasis|defense response|negative regulation of hydrogen peroxide catabolic process|negative regulation of oxidoreductase activity|positive regulation of cell death|proteolysis|response to hydrogen peroxide	extracellular region|haptoglobin-hemoglobin complex	hemoglobin binding|serine-type endopeptidase activity				0		Renal(780;9.67e-05)|Ovarian(137;0.00327)|Hepatocellular(780;0.114)		BRCA - Breast invasive adenocarcinoma(221;0.00015)|Kidney(780;0.000529)		CAGTGCAGCGGATCCTGGGTG	0.532													6	25					0	0	1	0	0
TXNL4B	54957	broad.mit.edu	37	16	72120625	72120625	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:72120625G>A	uc002fca.2	-	4	672	c.361C>T	c.(361-363)CGA>TGA	p.R121*	TXNL4B_uc010cgl.2_Intron|TXNL4B_uc010vmn.1_Nonsense_Mutation_p.R121*|TXNL4B_uc010vmo.1_Nonsense_Mutation_p.R121*	NM_017853	NP_060323	Q9NX01	TXN4B_HUMAN	thioredoxin-like 4B	121					mitosis|mRNA processing|RNA splicing	spliceosomal complex				ovary(1)	1						ATTGCTCCTCGATAGATTACT	0.368													5	41					0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	74425410	74425410	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:74425410C>T	uc010vmt.1	+	6	582	c.581C>T	c.(580-582)TCT>TTT	p.S194F						RecName: Full=Nuclear pore complex-interacting protein-like 2; Flags: Precursor;																		CAACAACATTCTATAACTGAT	0.502													20	130					0	0	1	0	0
BCAR1	9564	broad.mit.edu	37	16	75276752	75276752	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:75276752G>A	uc002fdv.2	-	2	372	c.249C>T	c.(247-249)GCC>GCT	p.A83A	BCAR1_uc010cgu.2_Silent_p.A54A|BCAR1_uc010vna.1_Silent_p.A81A|BCAR1_uc010vnb.1_Silent_p.A129A|BCAR1_uc002fdw.2_Silent_p.A83A|BCAR1_uc010vnc.1_Intron|BCAR1_uc010vnd.1_Silent_p.A101A|BCAR1_uc002fdx.2_Silent_p.A101A	NM_014567	NP_055382	P56945	BCAR1_HUMAN	breast cancer anti-estrogen resistance 1	83	Pro-rich.				actin filament organization|B cell receptor signaling pathway|blood coagulation|cell adhesion|cell division|cell migration|cell proliferation|epidermal growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|integrin-mediated signaling pathway|nerve growth factor receptor signaling pathway|platelet-derived growth factor receptor signaling pathway|positive regulation of cell migration|regulation of apoptosis|regulation of cell growth|T cell receptor signaling pathway	cytosol|focal adhesion|membrane fraction|ruffle	protein kinase binding|protein phosphatase binding|SH3 domain binding|signal transducer activity			central_nervous_system(5)|breast(2)|prostate(1)	8				BRCA - Breast invasive adenocarcinoma(221;0.169)		GCTGAGGCTGGGCCGGGGTGG	0.692													22	34					0	0	1	0	0
TERF2IP	54386	broad.mit.edu	37	16	75690133	75690133	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:75690133T>A	uc002fet.1	+	3	921	c.824T>A	c.(823-825)ATA>AAA	p.I275K		NM_018975	NP_061848	Q9NYB0	TE2IP_HUMAN	telomeric repeat binding factor 2, interacting	275	Asp/Glu-rich (acidic).				negative regulation of DNA recombination at telomere|negative regulation of telomere maintenance|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|regulation of double-strand break repair via homologous recombination|telomere maintenance via telomerase|transcription, DNA-dependent	cytoplasm|nuclear telomere cap complex|nucleoplasm	DNA binding|protein binding			central_nervous_system(1)	1						GATTTTGAAATACATATAACT	0.353													10	57					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77334194	77334194	+	Silent	SNP	G	A	A	rs148705153		TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:77334194G>A	uc002ffc.3	-	17	3059	c.2640C>T	c.(2638-2640)ATC>ATT	p.I880I	ADAMTS18_uc010chc.1_Silent_p.I468I|ADAMTS18_uc002ffe.1_Silent_p.I576I	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	880					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						CTGACTGCACGATACTCCAGG	0.478													8	44					0	0	1	0	0
CLEC3A	10143	broad.mit.edu	37	16	78064434	78064435	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:78064434_78064435CC>TT	uc002ffh.3	+	3	371_372	c.290_291CC>TT	c.(289-291)TCC>TTT	p.S97F		NM_005752	NP_005743	O75596	CLC3A_HUMAN	C-type lectin domain family 3 member A	97	C-type lectin.				skeletal system development	extracellular region	sugar binding				0						GACTGCATTTCCAAAGGAGGAA	0.475													15	56					0	0	1	0	0
KCNG4	93107	broad.mit.edu	37	16	84255852	84255852	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:84255852C>T	uc010voc.1	-	3	1652	c.1531G>A	c.(1531-1533)GGC>AGC	p.G511S		NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	511	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						AAGGCTGGGCCCTCCAGGATT	0.542													55	113					0	0	1	0	0
CPNE7	27132	broad.mit.edu	37	16	89655160	89655160	+	Silent	SNP	G	A	A	rs149655987	byFrequency	TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr16:89655160G>A	uc002fnp.2	+	12	1360	c.1230G>A	c.(1228-1230)CCG>CCA	p.P410P	CPNE7_uc002fnq.2_Silent_p.P335P	NM_014427	NP_055242	Q9UBL6	CPNE7_HUMAN	copine 7 isoform b	410	VWFA.				lipid metabolic process		transporter activity				0		all_hematologic(23;0.0748)		all cancers(4;3.63e-08)|OV - Ovarian serous cystadenocarcinoma(4;1.7e-06)|BRCA - Breast invasive adenocarcinoma(80;0.0147)		CCTACCAGCCGAACGAGTACC	0.637													7	34					0	0	1	0	0
OR1E1	8387	broad.mit.edu	37	17	3301182	3301182	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:3301182G>A	uc002fvj.1	-	1	523	c.523C>T	c.(523-525)CCC>TCC	p.P175S		NM_003553	NP_003544	P30953	OR1E1_HUMAN	olfactory receptor, family 1, subfamily E,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AAAAAGTGGGGGATCACATTG	0.493													13	27					0	0	1	0	0
RABEP1	9135	broad.mit.edu	37	17	5286426	5286426	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:5286426G>A	uc002gbm.3	+	18	2721	c.2497G>A	c.(2497-2499)GAG>AAG	p.E833K	RABEP1_uc010vsw.1_Missense_Mutation_p.E790K|RABEP1_uc002gbl.3_Missense_Mutation_p.E800K|NUP88_uc002gbn.2_Intron	NM_004703	NP_004694	Q15276	RABE1_HUMAN	rabaptin, RAB GTPase binding effector protein 1	833					apoptosis|cellular membrane fusion|endocytosis|protein transport	centrosome|early endosome|endocytic vesicle|recycling endosome	growth factor activity|GTPase activator activity|protein homodimerization activity			large_intestine(1)|ovary(1)	2						GGTGCAGTTAGAGCGGATCCG	0.463													19	39					0	0	1	0	0
NLRP1	22861	broad.mit.edu	37	17	5461997	5461997	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:5461997G>A	uc002gci.2	-	4	2574	c.2019C>T	c.(2017-2019)TTC>TTT	p.F673F	NLRP1_uc002gcg.1_Silent_p.F673F|NLRP1_uc002gck.2_Silent_p.F673F|NLRP1_uc002gcj.2_Silent_p.F673F|NLRP1_uc002gcl.2_Silent_p.F673F|NLRP1_uc002gch.3_Silent_p.F673F|NLRP1_uc010clh.2_Silent_p.F673F	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	673					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				GGCCCAATAGGAAACGTGTGG	0.498													38	137					0	0	1	0	0
WSCD1	23302	broad.mit.edu	37	17	6014093	6014093	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:6014093A>T	uc010cli.2	+	7	1391	c.1012A>T	c.(1012-1014)ACT>TCT	p.T338S	WSCD1_uc002gcn.2_Missense_Mutation_p.T338S|WSCD1_uc002gco.2_Missense_Mutation_p.T338S|WSCD1_uc010clj.2_Missense_Mutation_p.T29S	NM_015253	NP_056068	Q658N2	WSCD1_HUMAN	WSC domain containing 1	338	WSC 2.					integral to membrane	sulfotransferase activity				0						ACTTTCAGACACTCGTTGTAC	0.468													93	250					0	0	1	0	0
KIAA0753	9851	broad.mit.edu	37	17	6493230	6493230	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:6493230G>A	uc002gde.3	-	18	3014	c.2655C>T	c.(2653-2655)GGC>GGT	p.G885G	KIAA0753_uc010vtd.1_Silent_p.G341G|KIAA0753_uc010clo.2_Silent_p.G586G|KIAA0753_uc010vte.1_Silent_p.G586G	NM_014804	NP_055619	Q2KHM9	K0753_HUMAN	hypothetical protein LOC9851	885						centrosome					0				COAD - Colon adenocarcinoma(228;0.157)		GGGGAGCTCGGCCTTCTTTCT	0.512													11	48					0	0	1	0	0
CHRNB1	1140	broad.mit.edu	37	17	7351964	7351964	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:7351964G>A	uc002ghb.2	+	7	718	c.677G>A	c.(676-678)GGA>GAA	p.G226E	CHRNB1_uc010vty.1_Missense_Mutation_p.G154E|CHRNB1_uc010vtz.1_Missense_Mutation_p.G60E	NM_000747	NP_000738	P11230	ACHB_HUMAN	nicotinic acetylcholine receptor beta 1 subunit	226	Extracellular (Potential).				behavioral response to nicotine|muscle contraction|muscle fiber development|neuromuscular synaptic transmission|postsynaptic membrane organization|regulation of membrane potential|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine binding|receptor activity			ovary(2)	2		Prostate(122;0.157)				GATCCTAGGGGAGGGAGGGAA	0.567													20	41					0	0	1	0	0
CD68	968	broad.mit.edu	37	17	7483543	7483543	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:7483543G>A	uc002ghv.2	+	2	656	c.465G>A	c.(463-465)GAG>GAA	p.E155E	CD68_uc002ghu.2_Silent_p.E128E	NM_001251	NP_001242	P34810	CD68_HUMAN	CD68 antigen isoform A	155	Extracellular (Potential).					endosome membrane|integral to membrane|lysosomal membrane|membrane fraction|plasma membrane					0						CCTCCAAGGAGACCATTGGAG	0.572													8	21					0	0	1	0	0
WRAP53	55135	broad.mit.edu	37	17	7605013	7605013	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:7605013G>A	uc010vuh.1	+	7	1016	c.861G>A	c.(859-861)CCG>CCA	p.P287P	WRAP53_uc010vui.1_Silent_p.P287P|WRAP53_uc002gip.2_Silent_p.P287P|WRAP53_uc002gir.2_Silent_p.P287P|WRAP53_uc002giq.2_RNA|WRAP53_uc010cnl.2_Silent_p.P254P|WRAP53_uc010vuj.1_Silent_p.P68P	NM_001143990	NP_001137462	Q9BUR4	WAP53_HUMAN	WD repeat domain 79 isoform 2	287	WD 3.				positive regulation of telomerase activity|telomere formation via telomerase	Cajal body|cytoplasm|telomerase holoenzyme complex	protein binding|RNA binding				0						GCTTCTCCCCGGATGGCTCCC	0.602													23	60					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7689558	7689558	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:7689558C>T	uc002giu.1	+	39	6260	c.6246C>T	c.(6244-6246)ATC>ATT	p.I2082I		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2082	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CCACCATGATCGTGGGCTGCA	0.572													19	50					0	0	1	0	0
GAS7	8522	broad.mit.edu	37	17	9843463	9843464	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:9843463_9843464GG>AA	uc002gmg.1	-	8	946_947	c.785_786CC>TT	c.(784-786)TCC>TTT	p.S262F	GAS7_uc010vvc.1_Missense_Mutation_p.S76F|GAS7_uc002gmh.1_Missense_Mutation_p.S122F|GAS7_uc010vvd.1_Missense_Mutation_p.S214F|GAS7_uc002gmi.2_Missense_Mutation_p.S198F|GAS7_uc002gmj.1_Missense_Mutation_p.S202F|GAS7_uc010coh.1_Missense_Mutation_p.S202F	NM_201433	NP_958839	O60861	GAS7_HUMAN	growth arrest-specific 7 isoform c	262	FCH.				cell cycle arrest	cytoplasm	sequence-specific DNA binding transcription factor activity			lung(1)|pancreas(1)	2						GTGAAGCCAAGGAGTTCTGAGA	0.505			T	MLL	AML*								74	141					0	0	1	0	0
LOC162632	162632	broad.mit.edu	37	17	16703539	16703539	+	RNA	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:16703539G>A	uc010cpj.1	+	19		c.4650G>A			LOC162632_uc010cpk.1_RNA|LOC162632_uc010vwq.1_RNA|LOC162632_uc002gqm.2_RNA					Homo sapiens mRNA for KIAA0565 protein, partial cds.												0						AGGACCATGAGGTAGCTTTGG	0.547													18	77					0	0	1	0	0
MPRIP	23164	broad.mit.edu	37	17	17039616	17039616	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:17039616C>T	uc002gqu.1	+	6	644	c.588C>T	c.(586-588)GTC>GTT	p.V196V	MPRIP_uc002gqv.1_Silent_p.V196V|MPRIP_uc002gqw.1_5'UTR	NM_201274	NP_958431	Q6WCQ1	MPRIP_HUMAN	myosin phosphatase-Rho interacting protein	196	Ser-rich.|Interaction with F-actin (By similarity).					cytoplasm|cytoskeleton	actin binding				0						CTGAGAAAGTCCCCACCACCA	0.498													10	21					0	0	1	0	0
MAP2K3	5606	broad.mit.edu	37	17	21201746	21201746	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:21201746A>G	uc002gys.2	+	2	336	c.71A>G	c.(70-72)GAT>GGT	p.D24G	MAP2K3_uc002gyt.2_5'UTR|MAP2K3_uc002gyu.2_5'UTR	NM_145109	NP_659731	P46734	MP2K3_HUMAN	mitogen-activated protein kinase kinase 3	24					activation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of transcription, DNA-dependent|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0				COAD - Colon adenocarcinoma(3;0.0131)|Colorectal(15;0.0553)		AGGAAGAAGGATCTACGGATA	0.572													46	261					0	0	1	0	0
KIAA0100	9703	broad.mit.edu	37	17	26958619	26958620	+	Silent	DNP	GG	AA	AA	rs76379991		TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:26958619_26958620GG>AA	uc002hbu.2	-	23	4275_4276	c.4176_4177CC>TT	c.(4174-4179)CACCTG>CATTTG	p.1392_1393HL>HL		NM_014680	NP_055495	Q14667	K0100_HUMAN	hypothetical protein LOC9703 precursor	1392_1393						extracellular region				ovary(2)|breast(1)|skin(1)	4	Lung NSC(42;0.00431)					GAGGCCATCAGGTGAACGGTCA	0.53													18	35					0	0	1	0	0
NUFIP2	57532	broad.mit.edu	37	17	27613933	27613933	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:27613933C>T	uc002hdy.3	-	2	1168	c.1079G>A	c.(1078-1080)AGC>AAC	p.S360N	NUFIP2_uc002hdx.3_Intron	NM_020772	NP_065823	Q7Z417	NUFP2_HUMAN	nuclear fragile X mental retardation protein	360						nucleus|polysomal ribosome	protein binding|RNA binding			skin(2)|ovary(1)|breast(1)	4			BRCA - Breast invasive adenocarcinoma(11;0.000457)|Colorectal(6;0.0178)|COAD - Colon adenocarcinoma(6;0.0551)			CTTAACTTTGCTTGCATAACT	0.413													43	113					0	0	1	0	0
IKZF3	22806	broad.mit.edu	37	17	37949143	37949143	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:37949143C>T	uc002hsu.2	-	4	269	c.207G>A	c.(205-207)GAG>GAA	p.E69E	IKZF3_uc002htd.2_Silent_p.E35E|IKZF3_uc010cwd.2_Intron|IKZF3_uc002hsv.2_Silent_p.E35E|IKZF3_uc010cwe.2_Silent_p.E69E|IKZF3_uc010cwf.2_Intron|IKZF3_uc010cwg.2_Intron|IKZF3_uc002hsw.2_Silent_p.E69E|IKZF3_uc002hsx.2_Silent_p.E69E|IKZF3_uc002hsy.2_Silent_p.E69E|IKZF3_uc002hsz.2_Silent_p.E69E|IKZF3_uc002hta.2_Silent_p.E69E|IKZF3_uc002htb.2_RNA|IKZF3_uc010cwh.2_Intron|IKZF3_uc002htc.2_5'UTR	NM_012481	NP_036613	Q9UKT9	IKZF3_HUMAN	aiolos isoform 1	69					B cell activation|mesoderm development|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)|kidney(2)|skin(2)	6	Breast(7;4.5e-103)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			TTAAAACATTCTCATCTCTTT	0.348													24	50					0	0	1	0	0
TNS4	84951	broad.mit.edu	37	17	38640851	38640851	+	Silent	SNP	C	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:38640851C>A	uc010cxb.2	-	6	1550	c.1386G>T	c.(1384-1386)CTG>CTT	p.L462L		NM_032865	NP_116254	Q8IZW8	TENS4_HUMAN	tensin 4 precursor	462	SH2.				apoptosis|protein localization	cytoplasm|cytoskeleton|focal adhesion	actin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(5;5.91e-05)			CCTTCCTCAGCAGCTCGATTG	0.592													20	61					9.95505e-16	1.0228e-15	1	1	0
KRT222	125113	broad.mit.edu	37	17	38813728	38813728	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:38813728C>T	uc002hvc.2	-	5	600	c.535G>A	c.(535-537)GAA>AAA	p.E179K	KRT222_uc010wfk.1_RNA|KRT222_uc002hvb.2_Missense_Mutation_p.E139K|KRT222_uc010cxc.2_3'UTR	NM_152349	NP_689562	Q8N1A0	KT222_HUMAN	truncated type I keratin KA21	179						intermediate filament	structural molecule activity			central_nervous_system(1)|skin(1)	2						AAAGATATTTCATTTATAATG	0.269													4	15					0	0	1	0	0
KRT10	3858	broad.mit.edu	37	17	38978543	38978543	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:38978543C>T	uc002hvi.2	-	1	321	c.295G>A	c.(295-297)GGA>AGA	p.G99R	KRT10_uc010cxd.2_5'Flank|TMEM99_uc002hvj.1_Intron	NM_000421	NP_000412	P13645	K1C10_HUMAN	keratin 10	99	Head.|Gly-rich.				epidermis development		protein binding|structural constituent of epidermis				0		Breast(137;0.000301)				AAGATGCCTCCATAACTCCCA	0.488													35	92					0	0	1	0	0
TMEM99	147184	broad.mit.edu	37	17	38990881	38990881	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:38990881C>T	uc002hvj.1	+	3	420	c.113C>T	c.(112-114)TCA>TTA	p.S38L		NM_145274	NP_660317	Q8N816	TMM99_HUMAN	transmembrane protein 99 precursor	38						integral to membrane				skin(1)	1		Breast(137;0.000301)				GTTCCTCATTCAGCTGGTCAC	0.522													33	100					0	0	1	0	0
KRT20	54474	broad.mit.edu	37	17	39036430	39036430	+	Silent	SNP	G	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:39036430G>T	uc002hvl.2	-	4	756	c.714C>A	c.(712-714)ATC>ATA	p.I238I		NM_019010	NP_061883	P35900	K1C20_HUMAN	keratin 20	238	Linker 12.|Rod.				apoptosis|intermediate filament organization	Golgi apparatus|intermediate filament	protein binding|structural constituent of cytoskeleton			large_intestine(1)|kidney(1)|skin(1)	3		Breast(137;0.000301)|Ovarian(249;0.15)				TTTCATTCATGATGACGCCAA	0.463													12	129					6.40141e-05	6.46138e-05	1	1	0
Unknown	0	broad.mit.edu	37	17	39564933	39564933	+	RNA	SNP	C	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:39564933C>A	uc002hwo.1	+	2		c.354C>A								Homo sapiens cDNA FLJ41849 fis, clone NT2RI3003409.																		TCAGGGACTCCAGCTGGGCCT	0.582													19	22					2.39556e-15	2.45538e-15	1	1	0
GHDC	84514	broad.mit.edu	37	17	40343052	40343053	+	Missense_Mutation	DNP	GG	AA	AA	rs140891551	byFrequency	TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:40343052_40343053GG>AA	uc002hzd.2	-	5	1549_1550	c.1065_1066CC>TT	c.(1063-1068)GACCGC>GATTGC	p.R356C	GHDC_uc002hzg.1_Missense_Mutation_p.R356C|GHDC_uc010wgg.1_Missense_Mutation_p.R317C|GHDC_uc002hze.3_Missense_Mutation_p.R356C|GHDC_uc002hzf.3_Missense_Mutation_p.R356C	NM_032484	NP_115873	Q8N2G8	GHDC_HUMAN	LGP1 homolog isoform 1	356						endoplasmic reticulum|nuclear envelope					0		all_cancers(22;0.000229)|Breast(137;0.00104)|all_epithelial(22;0.00304)		BRCA - Breast invasive adenocarcinoma(366;0.124)		AGGCTGGCGCGGTCCGTCAGCA	0.658													15	68					0	0	1	0	0
GHDC	84514	broad.mit.edu	37	17	40343103	40343104	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:40343103_40343104GG>AA	uc002hzd.2	-	5	1498_1499	c.1014_1015CC>TT	c.(1012-1017)CTCCTT>CTTTTT	p.L339F	GHDC_uc002hzg.1_Missense_Mutation_p.L339F|GHDC_uc010wgg.1_Missense_Mutation_p.L300F|GHDC_uc002hze.3_Missense_Mutation_p.L339F|GHDC_uc002hzf.3_Missense_Mutation_p.L339F	NM_032484	NP_115873	Q8N2G8	GHDC_HUMAN	LGP1 homolog isoform 1	339						endoplasmic reticulum|nuclear envelope					0		all_cancers(22;0.000229)|Breast(137;0.00104)|all_epithelial(22;0.00304)		BRCA - Breast invasive adenocarcinoma(366;0.124)		TCGGCCAAAAGGAGGGTGGAGG	0.658													15	83					0	0	1	0	0
ASB16	92591	broad.mit.edu	37	17	42248167	42248167	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:42248167G>A	uc002ifl.1	+	1	94	c.10G>A	c.(10-12)GAG>AAG	p.E4K	ASB16_uc002ifm.1_RNA	NM_080863	NP_543139	Q96NS5	ASB16_HUMAN	ankyrin repeat and SOCS box-containing protein	4					intracellular signal transduction		protein binding			kidney(2)	2		Breast(137;0.00765)|Prostate(33;0.0313)		BRCA - Breast invasive adenocarcinoma(366;0.114)		CATGGCAAGAGAGACCTTCCC	0.682													39	80					0	0	1	0	0
MAPT	4137	broad.mit.edu	37	17	44060866	44060866	+	Silent	SNP	C	T	T	rs147885393	byFrequency	TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:44060866C>T	uc002ijr.3	+	6	1016	c.696C>T	c.(694-696)TCC>TCT	p.S232S	MAPT_uc010dau.2_Silent_p.S232S|MAPT_uc002ijs.3_Intron|MAPT_uc002ijx.3_Intron|MAPT_uc002ijt.3_Intron|MAPT_uc002iju.3_Intron|MAPT_uc002ijv.3_Intron	NM_016835	NP_058519	P10636	TAU_HUMAN	microtubule-associated protein tau isoform 1	232					cellular component disassembly involved in apoptosis|microtubule cytoskeleton organization|negative regulation of microtubule depolymerization|positive regulation of axon extension|positive regulation of microtubule polymerization|regulation of autophagy	axon|cytosol|growth cone|microtubule|microtubule associated complex|nuclear periphery|plasma membrane|tubulin complex	apolipoprotein E binding|enzyme binding|identical protein binding|lipoprotein particle binding|microtubule binding|protein binding|SH3 domain binding|structural constituent of cytoskeleton			pancreas(1)	1		Melanoma(429;0.216)				CCCAAGACTCCCCTCCCTCCA	0.692													16	39					0	0	1	0	0
LRRC37A2	474170	broad.mit.edu	37	17	44626486	44626486	+	Silent	SNP	C	G	G			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:44626486C>G	uc002ikn.1	+	9	3984	c.3981C>G	c.(3979-3981)GTC>GTG	p.V1327V	ARL17A_uc002iko.3_Intron|LRRC37A2_uc002ikq.1_Silent_p.V288V|LRRC37A2_uc010dax.1_Silent_p.V257V	NM_001006607	NP_001006608	A6NM11	L37A2_HUMAN	c114 SLIT-like testicular protein precursor	1327	Extracellular (Potential).					integral to membrane					0		Melanoma(429;0.211)		BRCA - Breast invasive adenocarcinoma(366;0.232)		GTCCAAAGGTCAGAAAGAAAA	0.448													76	402					0	0	1	0	0
CACNA1G	8913	broad.mit.edu	37	17	48678173	48678173	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:48678173C>T	uc002irk.1	+	18	4149	c.3777C>T	c.(3775-3777)TTC>TTT	p.F1259F	CACNA1G_uc002iri.1_Silent_p.F1259F|CACNA1G_uc002irj.1_Silent_p.F1236F|CACNA1G_uc002irl.1_Silent_p.F1236F|CACNA1G_uc002irm.1_Silent_p.F1236F|CACNA1G_uc002irn.1_Silent_p.F1236F|CACNA1G_uc002iro.1_Silent_p.F1236F|CACNA1G_uc002irp.1_Silent_p.F1259F|CACNA1G_uc002irq.1_Silent_p.F1236F|CACNA1G_uc002irr.1_Silent_p.F1259F|CACNA1G_uc002irs.1_Silent_p.F1259F|CACNA1G_uc002irt.1_Silent_p.F1259F|CACNA1G_uc002irv.1_Silent_p.F1259F|CACNA1G_uc002irw.1_Silent_p.F1236F|CACNA1G_uc002iru.1_Silent_p.F1236F|CACNA1G_uc002irx.1_Silent_p.F1172F|CACNA1G_uc002iry.1_Silent_p.F1172F|CACNA1G_uc002irz.1_Silent_p.F1172F|CACNA1G_uc002isa.1_Silent_p.F1172F|CACNA1G_uc002isb.1_Silent_p.F1172F|CACNA1G_uc002isc.1_Silent_p.F1172F|CACNA1G_uc002isd.1_Silent_p.F1172F|CACNA1G_uc002ise.1_Silent_p.F1172F|CACNA1G_uc002isf.1_Silent_p.F1172F|CACNA1G_uc002isg.1_Silent_p.F1172F|CACNA1G_uc002ish.1_Silent_p.F1172F|CACNA1G_uc002isi.1_Silent_p.F1149F|CACNA1G_uc002isj.2_5'UTR	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1259	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	CCTACATCTTCCCTCCTCAGT	0.592													28	36					0	0	1	0	0
ABCC3	8714	broad.mit.edu	37	17	48741442	48741442	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:48741442G>A	uc002isl.2	+	10	1388	c.1308G>A	c.(1306-1308)CAG>CAA	p.Q436Q	ABCC3_uc002isk.3_Silent_p.Q436Q|ABCC3_uc002ism.2_Missense_Mutation_p.D149N	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	436	ABC transmembrane type-1 1.|Helical; Name=8; (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	CACCCCTGCAGATCATCCTGG	0.557													48	95					0	0	1	0	0
ANKFN1	162282	broad.mit.edu	37	17	54403620	54403620	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:54403620G>A	uc002iun.1	+	3	136	c.101G>A	c.(100-102)AGC>AAC	p.S34N		NM_153228	NP_694960	Q8N957	ANKF1_HUMAN	ankyrin-repeat and fibronectin type III domain	34										large_intestine(1)|ovary(1)	2						CAGAGGCTGAGCCACAGGAGA	0.438													33	76					0	0	1	0	0
TRIM25	7706	broad.mit.edu	37	17	54981663	54981663	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:54981663C>T	uc002iut.2	-	3	940	c.880G>A	c.(880-882)GAG>AAG	p.E294K	TRIM25_uc010dcj.2_Missense_Mutation_p.E86K	NM_005082	NP_005073	Q14258	TRI25_HUMAN	tripartite motif-containing 25	294	Interaction with influenza A virus NS1.|Potential.				innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|response to virus	cell junction|cytosol|nucleus	sequence-specific DNA binding transcription factor activity|ubiquitin-protein ligase activity|zinc ion binding			lung(1)|breast(1)|skin(1)	3	Breast(9;6.15e-08)					TGTTCAATCTCCTCCTTCAAG	0.428													71	156					0	0	1	0	0
MRC2	9902	broad.mit.edu	37	17	60754833	60754833	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:60754833C>T	uc002jad.2	+	12	2440	c.2038C>T	c.(2038-2040)CGG>TGG	p.R680W	MRC2_uc010ddq.1_RNA	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	680	Extracellular (Potential).|C-type lectin 4.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CACCAAACTCCGGTATTGCTA	0.662													3	23					0	0	1	0	0
SMARCD2	6603	broad.mit.edu	37	17	61914872	61914872	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:61914872G>A	uc010deb.1	-	2	647	c.330C>T	c.(328-330)ACC>ACT	p.T110T	SMARCD2_uc010wpt.1_Silent_p.T62T|SMARCD2_uc010dea.1_Silent_p.T35T|SMARCD2_uc010dec.1_Silent_p.T89T	NM_001098426	NP_001091896	Q92925	SMRD2_HUMAN	SWI/SNF-related matrix-associated	110	Pro-rich.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	SWI/SNF complex	protein binding|transcription coactivator activity				0						GATCCATCATGGTGGGTGGCA	0.647													6	116					0	0	1	0	0
ERN1	2081	broad.mit.edu	37	17	62121441	62121441	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:62121441G>A	uc002jdz.2	-	22	2954	c.2841C>T	c.(2839-2841)GCC>GCT	p.A947A	uc002jdy.1_5'Flank	NM_001433	NP_001424	O75460	ERN1_HUMAN	endoplasmic reticulum to nucleus signalling 1	947	Cytoplasmic (Potential).|KEN.				activation of signaling protein activity involved in unfolded protein response|apoptosis|cell cycle arrest|induction of apoptosis|mRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to endoplasmic reticulum membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(4)|lung(2)|stomach(1)|ovary(1)|kidney(1)	9						ACAGCTCCATGGCCCGGTAGG	0.657													31	72					0	0	1	0	0
RGS9	8787	broad.mit.edu	37	17	63223508	63223509	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:63223508_63223509CC>TT	uc002jfe.2	+	19	2118_2119	c.2008_2009CC>TT	c.(2008-2010)CCC>TTC	p.P670F	RGS9_uc002jfd.2_Missense_Mutation_p.P667F|RGS9_uc002jff.2_RNA|RGS9_uc002jfg.2_Missense_Mutation_p.P441F	NM_003835	NP_003826	O75916	RGS9_HUMAN	regulator of G-protein signaling 9 isoform 1	670					intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway|visual perception	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			ovary(2)|skin(2)	4						GGTCATCTGCCCCTGGGAGAGC	0.604													9	17					0	0	1	0	0
APOH	350	broad.mit.edu	37	17	64212974	64212974	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:64212974G>A	uc002jfn.3	-	6	775	c.716C>T	c.(715-717)TCT>TTT	p.S239F		NM_000042	NP_000033	P02749	APOH_HUMAN	apolipoprotein H precursor	239	Sushi 4.				blood coagulation, intrinsic pathway|negative regulation of angiogenesis|negative regulation of blood coagulation|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of myeloid cell apoptosis|negative regulation of smooth muscle cell apoptosis|plasminogen activation|positive regulation of lipoprotein lipase activity|triglyceride metabolic process|triglyceride transport	cell surface|chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	eukaryotic cell surface binding|glycoprotein binding|heparin binding|lipoprotein lipase activator activity|phospholipid binding				0			BRCA - Breast invasive adenocarcinoma(6;9.74e-08)			GCCATCCAGAGAATATCCATC	0.433													42	87					0	0	1	0	0
LOC651250	651250	broad.mit.edu	37	17	66131683	66131683	+	RNA	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:66131683G>A	uc002jgq.2	+	6		c.10806G>A			LOC651250_uc002kit.2_RNA|LOC651250_uc002jgo.1_Intron	NR_027418				Homo sapiens cDNA FLJ33831 fis, clone CTONG2003937.												0						CAGCCCCTCCGACCTTCTCAC	0.597													29	90					0	0	1	0	0
ABCA5	23461	broad.mit.edu	37	17	67305454	67305454	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:67305454G>A	uc002jif.2	-	3	1636	c.418C>T	c.(418-420)CGT>TGT	p.R140C	ABCA5_uc002jig.2_Missense_Mutation_p.R140C|ABCA5_uc002jih.2_Missense_Mutation_p.R140C|ABCA5_uc010dfe.2_Missense_Mutation_p.R140C	NM_018672	NP_061142	Q8WWZ7	ABCA5_HUMAN	ATP-binding cassette, sub-family A , member 5	140					cholesterol efflux|high-density lipoprotein particle remodeling|negative regulation of macrophage derived foam cell differentiation	Golgi membrane|integral to membrane|late endosome membrane|lysosomal membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;3.72e-11)					GGAAAAAAACGAAGTTCATAG	0.328													14	47					0	0	1	0	0
SDK2	54549	broad.mit.edu	37	17	71384103	71384103	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:71384103C>T	uc010dfm.2	-	30	4266	c.4266G>A	c.(4264-4266)TGG>TGA	p.W1422*	SDK2_uc002jjt.3_Nonsense_Mutation_p.W581*|SDK2_uc010dfn.2_Nonsense_Mutation_p.W1101*	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1422	Fibronectin type-III 9.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						TCCCTGGCTCCCAGGACAGCA	0.701													2	4					0	0	1	0	0
SDK2	54549	broad.mit.edu	37	17	71410883	71410883	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:71410883G>A	uc010dfm.2	-	18	2384	c.2384C>T	c.(2383-2385)CCG>CTG	p.P795L	SDK2_uc010dfn.2_Missense_Mutation_p.P474L	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	795	Fibronectin type-III 3.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						CACATTGCCCGGAGGGACCGT	0.612													6	56					0	0	1	0	0
DNAI2	64446	broad.mit.edu	37	17	72308294	72308294	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:72308294G>A	uc002jkf.2	+	12	1746	c.1647G>A	c.(1645-1647)GAG>GAA	p.E549E	DNAI2_uc002jkg.2_RNA|DNAI2_uc010dfp.2_Intron|uc002jkh.1_5'Flank|DNAI2_uc002jki.2_RNA	NM_023036	NP_075462	Q9GZS0	DNAI2_HUMAN	dynein, axonemal, intermediate polypeptide 2	549					cilium assembly	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	microtubule motor activity			ovary(2)|central_nervous_system(1)	3						GCAAGGCCGAGGAGGAGTTCT	0.552									Kartagener_syndrome				19	25					0	0	1	0	0
ITGB4	3691	broad.mit.edu	37	17	73745120	73745120	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:73745120G>A	uc002jpg.2	+	27	3497	c.3310G>A	c.(3310-3312)GAC>AAC	p.D1104N	ITGB4_uc002jph.2_Missense_Mutation_p.D1104N|ITGB4_uc002jpi.3_Missense_Mutation_p.D1104N|ITGB4_uc002jpj.2_Missense_Mutation_p.D1104N	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	1104	Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			CATCATCAGGGACCCAGGTAG	0.552													12	21					0	0	1	0	0
MGAT5B	146664	broad.mit.edu	37	17	74936505	74936505	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:74936505C>T	uc002jti.2	+	12	1736	c.1633C>T	c.(1633-1635)CCC>TCC	p.P545S	MGAT5B_uc002jth.2_Missense_Mutation_p.P534S	NM_198955	NP_945193	Q3V5L5	MGT5B_HUMAN	N-acetylglucosaminyltranferase VB isoform 2	536	Lumenal (Potential).					Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(2)|skin(1)	3						GTTTGGCTTCCCCTACGAGGG	0.652													25	155					0	0	1	0	0
BAIAP2	10458	broad.mit.edu	37	17	79077473	79077474	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:79077473_79077474CC>TT	uc002jzg.2	+	8	922_923	c.814_815CC>TT	c.(814-816)CCG>TTG	p.P272L	BAIAP2_uc002jyz.3_Missense_Mutation_p.P272L|BAIAP2_uc002jza.2_Missense_Mutation_p.P272L|BAIAP2_uc002jzc.2_Missense_Mutation_p.P272L|BAIAP2_uc002jzb.2_Missense_Mutation_p.P29L|BAIAP2_uc002jzd.2_Missense_Mutation_p.P272L|BAIAP2_uc002jzf.2_Missense_Mutation_p.P272L|BAIAP2_uc002jze.2_Missense_Mutation_p.P305L|BAIAP2_uc010wuh.1_Missense_Mutation_p.P194L|BAIAP2_uc002jzh.2_Missense_Mutation_p.P273L|BAIAP2_uc010wui.1_Missense_Mutation_p.P135L	NM_017451	NP_059345	Q9UQB8	BAIP2_HUMAN	BAI1-associated protein 2 isoform 2	272					axonogenesis|filopodium assembly|insulin receptor signaling pathway|regulation of actin cytoskeleton organization|response to bacterium	cell junction|cytoskeleton|cytosol|filopodium|nucleus|ruffle	cytoskeletal adaptor activity|proline-rich region binding|protein C-terminus binding|SH3 domain binding				0	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0228)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			CGACCCCATTCCGGGGGCCAAG	0.698													18	42					0	0	1	0	0
B3GNTL1	146712	broad.mit.edu	37	17	80915356	80915356	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr17:80915356G>A	uc002kgg.1	-	9	754	c.740C>T	c.(739-741)ACC>ATC	p.T247I	B3GNTL1_uc002kgf.1_Missense_Mutation_p.T136I|B3GNTL1_uc002kge.1_RNA	NM_001009905	NP_001009905	Q67FW5	B3GNL_HUMAN	UDP-GlcNAc:betaGal	247							transferase activity, transferring glycosyl groups			ovary(1)|pancreas(1)	2	Breast(20;0.000443)|all_neural(118;0.0779)	all_cancers(8;0.0396)|all_epithelial(8;0.0556)	BRCA - Breast invasive adenocarcinoma(99;0.0517)|OV - Ovarian serous cystadenocarcinoma(97;0.0868)			GACGCGGTGGGTCCAGATGGT	0.647													7	8					0	0	1	0	0
ANKRD12	23253	broad.mit.edu	37	18	9258430	9258430	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr18:9258430C>T	uc002knv.2	+	9	5422	c.5165C>T	c.(5164-5166)GCC>GTC	p.A1722V	ANKRD12_uc002knw.2_Missense_Mutation_p.A1699V|ANKRD12_uc002knx.2_Missense_Mutation_p.A1699V|ANKRD12_uc010dkx.1_Missense_Mutation_p.A1429V	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	1722						nucleus				ovary(2)|central_nervous_system(1)	3						GAAGAAAATGCCGAAGATGAT	0.343													9	18					0	0	1	0	0
ANKRD12	23253	broad.mit.edu	37	18	9263815	9263815	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr18:9263815C>T	uc002knv.2	+	10	5949	c.5692C>T	c.(5692-5694)CCA>TCA	p.P1898S	ANKRD12_uc002knw.2_Missense_Mutation_p.P1875S|ANKRD12_uc002knx.2_Missense_Mutation_p.P1875S	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	1898						nucleus				ovary(2)|central_nervous_system(1)	3						ACTGTCAGATCCACTTAAAGA	0.289													10	67					0	0	1	0	0
POTEC	388468	broad.mit.edu	37	18	14542906	14542906	+	Silent	SNP	C	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr18:14542906C>A	uc010dln.2	-	1	694	c.240G>T	c.(238-240)GTG>GTT	p.V80V	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	80										skin(3)	3						CAGAAGTGCCCACGTTGCTCG	0.587													18	375					5.01169e-05	5.07052e-05	1	1	0
ZNF521	25925	broad.mit.edu	37	18	22669461	22669461	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr18:22669461G>A	uc002kvk.2	-	7	4121	c.3874C>T	c.(3874-3876)CCA>TCA	p.P1292S	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.P1292S|ZNF521_uc002kvl.2_Missense_Mutation_p.P1072S	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	1292	C2H2-type 30.				cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					AACTTCTGTGGACATTGTGTA	0.398			T	PAX5	ALL								26	41					0	0	1	0	0
DSG3	1830	broad.mit.edu	37	18	29055985	29055985	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr18:29055985C>T	uc002kws.2	+	16	2871	c.2762C>T	c.(2761-2763)TCC>TTC	p.S921F	DSG3_uc002kwt.2_Missense_Mutation_p.S203F	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	921	Desmoglein repeat 1.|Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CCAGCTGTTTCCATCCCTGAC	0.502													17	39					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47405404	47405405	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr18:47405404_47405405CC>TT	uc002leb.2	-	24	3474_3475	c.3186_3187GG>AA	c.(3184-3189)GAGGAG>GAAAAG	p.E1063K	MYO5B_uc002lea.2_Missense_Mutation_p.E204K	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	1063	Potential.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		CGGGATCGCTCCTCCTCCAGTT	0.47													29	39					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47432962	47432962	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr18:47432962G>A	uc002leb.2	-	19	2529	c.2241C>T	c.(2239-2241)TTC>TTT	p.F747F		NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	747	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		CTGCTCGAAAGAAGATCTTGG	0.557													10	38					0	0	1	0	0
SERPINB11	89778	broad.mit.edu	37	18	61383326	61383326	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr18:61383326G>A	uc002ljk.3	+	6	477	c.415G>A	c.(415-417)GAA>AAA	p.E139K	SERPINB11_uc010xes.1_Intron|SERPINB11_uc010dqd.2_Missense_Mutation_p.E25K|SERPINB11_uc002ljj.3_Missense_Mutation_p.E25K|SERPINB11_uc010dqe.2_Intron|SERPINB11_uc010dqf.2_Intron	NM_080475	NP_536723	Q96P15	SPB11_HUMAN	serpin peptidase inhibitor, clade B, member 11	139					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			breast(1)	1		Esophageal squamous(42;0.129)				TGTGGATTTTGAACAGTCTAC	0.343													6	12					0	0	1	0	0
SERPINB10	5273	broad.mit.edu	37	18	61597295	61597295	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr18:61597295C>T	uc010xev.1	+	6	597	c.507C>T	c.(505-507)CTC>CTT	p.L169L	SERPINB10_uc010xew.1_Silent_p.L169L	NM_005024	NP_005015	P48595	SPB10_HUMAN	serine (or cysteine) proteinase inhibitor, clade	169						cytoplasm|nucleus	serine-type endopeptidase inhibitor activity			lung(1)|kidney(1)|skin(1)	3		Esophageal squamous(42;0.131)				TCCAGAATCTCCTGCCTGATG	0.383													26	31					0	0	1	0	0
TSHZ1	10194	broad.mit.edu	37	18	72999725	72999725	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr18:72999725C>T	uc002lly.2	+	2	2791	c.2228C>T	c.(2227-2229)CCC>CTC	p.P743L		NM_005786	NP_005777	Q6ZSZ6	TSH1_HUMAN	teashirt family zinc finger 1	788						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Esophageal squamous(42;0.129)|Prostate(75;0.142)|Melanoma(33;0.211)		Colorectal(1;0.000501)|READ - Rectum adenocarcinoma(2;0.00226)|BRCA - Breast invasive adenocarcinoma(31;0.246)		CCGGTGTACCCCGCCACCCCT	0.587													24	32					0	0	1	0	0
ATP9B	374868	broad.mit.edu	37	18	77105512	77105512	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr18:77105512C>T	uc002lmx.2	+	22	2571	c.2557C>T	c.(2557-2559)CAG>TAG	p.Q853*	ATP9B_uc002lmw.1_Nonsense_Mutation_p.Q853*|ATP9B_uc002lmz.1_Nonsense_Mutation_p.Q547*|ATP9B_uc002lna.2_5'UTR|ATP9B_uc002lnb.1_5'UTR|ATP9B_uc010drb.2_5'Flank	NM_198531	NP_940933	O43861	ATP9B_HUMAN	ATPase, class II, type 9B	853	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)	3		Esophageal squamous(42;0.018)|Melanoma(33;0.0964)|Prostate(75;0.171)		OV - Ovarian serous cystadenocarcinoma(15;1.44e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0405)		CTCACCCACCCAGAAGGCCCG	0.602													24	84					0	0	1	0	0
ADNP2	22850	broad.mit.edu	37	18	77896482	77896482	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr18:77896482C>T	uc002lnw.2	+	4	3641	c.3186C>T	c.(3184-3186)TTC>TTT	p.F1062F		NM_014913	NP_055728	Q6IQ32	ADNP2_HUMAN	ADNP homeobox 2	1062	Homeobox.				cellular response to oxidative stress|cellular response to retinoic acid|negative regulation of cell death|neuron differentiation|positive regulation of cell growth	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|breast(3)|central_nervous_system(1)	8		all_cancers(4;1.06e-15)|all_epithelial(4;2.36e-10)|all_lung(4;0.000302)|Lung NSC(4;0.000518)|Esophageal squamous(42;0.0212)|Ovarian(4;0.0256)|all_hematologic(56;0.15)|Melanoma(33;0.2)		Epithelial(2;1.1e-11)|OV - Ovarian serous cystadenocarcinoma(15;7.54e-09)|BRCA - Breast invasive adenocarcinoma(31;0.00247)|STAD - Stomach adenocarcinoma(84;0.164)		AAGATTATTTCCATAAGAAAC	0.338													23	49					0	0	1	0	0
DOT1L	84444	broad.mit.edu	37	19	2226890	2226890	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:2226890C>T	uc002lvb.3	+	27	4406	c.4370C>T	c.(4369-4371)TCC>TTC	p.S1457F	DOT1L_uc002lvc.1_Missense_Mutation_p.S751F	NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase	1457						nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCGGCGTCCTCCGCCCAGACG	0.766													10	12					0	0	1	0	0
ZNF554	115196	broad.mit.edu	37	19	2827652	2827652	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:2827652C>T	uc002lwm.2	+	3	362	c.164C>T	c.(163-165)TCC>TTC	p.S55F	ZNF554_uc002lwl.2_Missense_Mutation_p.S4F	NM_001102651	NP_001096121	Q86TJ5	ZN554_HUMAN	zinc finger protein 554	55	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ATGGACTTCTCCCAGGAGGAG	0.537													17	69					0	0	1	0	0
ZNRF4	148066	broad.mit.edu	37	19	5455650	5455650	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:5455650A>T	uc002mca.3	+	1	225	c.148A>T	c.(148-150)AAG>TAG	p.K50*		NM_181710	NP_859061	Q8WWF5	ZNRF4_HUMAN	zinc and ring finger 4 precursor	50	Extracellular (Potential).					integral to membrane	zinc ion binding			large_intestine(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;0.0002)		GAGATGCCCAAAGGCCTCATG	0.692													18	34					0	0	1	0	0
ZNRF4	148066	broad.mit.edu	37	19	5456251	5456251	+	Missense_Mutation	SNP	C	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:5456251C>A	uc002mca.3	+	1	826	c.749C>A	c.(748-750)CCC>CAC	p.P250H		NM_181710	NP_859061	Q8WWF5	ZNRF4_HUMAN	zinc and ring finger 4 precursor	250	Extracellular (Potential).					integral to membrane	zinc ion binding			large_intestine(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;0.0002)		GGCTGTCACCCCGTGCTGACC	0.687													16	72					2.62699e-14	2.68939e-14	1	1	0
ACSBG2	81616	broad.mit.edu	37	19	6182826	6182826	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:6182826G>T	uc002mef.1	+	9	1198	c.971G>T	c.(970-972)TGG>TTG	p.W324L	ACSBG2_uc002mee.1_Missense_Mutation_p.W137L|ACSBG2_uc002meg.1_Missense_Mutation_p.W324L|ACSBG2_uc002meh.1_Missense_Mutation_p.W324L|ACSBG2_uc002mei.1_Missense_Mutation_p.W274L|ACSBG2_uc010xiz.1_Missense_Mutation_p.W324L	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	324					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						CCTCAAATTTGGGAGAAGATA	0.463													12	38					0.000151284	0.000152167	1	1	0
DENND1C	79958	broad.mit.edu	37	19	6477418	6477418	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:6477418C>T	uc002mfe.2	-	7	510	c.418G>A	c.(418-420)GGG>AGG	p.G140R	DENND1C_uc002mfb.2_5'Flank|DENND1C_uc002mfc.2_5'Flank|DENND1C_uc002mfd.2_5'UTR|DENND1C_uc010xje.1_Missense_Mutation_p.G96R	NM_024898	NP_079174	Q8IV53	DEN1C_HUMAN	DENN/MADD domain containing 1C	140	DENN.					clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity			large_intestine(1)	1						GCCTGGGGCCCAGACAGGGAC	0.622													9	28					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9047822	9047822	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:9047822G>A	uc002mkp.2	-	5	34013	c.33809C>T	c.(33808-33810)CCT>CTT	p.P11270L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11272	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACTCTCTGCAGGATGGGTGAC	0.488													3	27					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9069347	9069347	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:9069347G>A	uc002mkp.2	-	3	18303	c.18099C>T	c.(18097-18099)TCC>TCT	p.S6033S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6035	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CGGATGGCTGGGAGTGGATTG	0.438													39	123					0	0	1	0	0
OR7D4	125958	broad.mit.edu	37	19	9325344	9325344	+	Missense_Mutation	SNP	G	A	A	rs149523827		TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:9325344G>A	uc002mla.1	-	1	170	c.170C>T	c.(169-171)ACC>ATC	p.T57I		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	57	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GTACATGGGGGTGTGGAGGTG	0.557													48	79					0	0	1	0	0
ZNF560	147741	broad.mit.edu	37	19	9578849	9578849	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:9578849G>A	uc002mlp.1	-	10	984	c.774C>T	c.(772-774)ACC>ACT	p.T258T	ZNF560_uc010dwr.1_Silent_p.T152T	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	258					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						TTATGGTAGAGGTTTTATTGT	0.373													22	83					0	0	1	0	0
ICAM1	3383	broad.mit.edu	37	19	10394406	10394406	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:10394406C>T	uc002mnq.2	+	3	900	c.581C>T	c.(580-582)CCC>CTC	p.P194L	ICAM1_uc010xle.1_Intron	NM_000201	NP_000192	P05362	ICAM1_HUMAN	intercellular adhesion molecule 1 precursor	194	Extracellular (Potential).				adhesion to symbiont|heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|membrane to membrane docking|positive regulation of cellular extravasation|regulation of immune response|regulation of leukocyte mediated cytotoxicity|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell|virion attachment, binding of host cell surface receptor	extracellular space|integral to plasma membrane	integrin binding|transmembrane receptor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(20;1.39e-09)|Epithelial(33;2.81e-06)|all cancers(31;6.56e-06)		Natalizumab(DB00108)|Simvastatin(DB00641)	GACCTGCGGCCCCAAGGGCTG	0.622													3	23					0	0	1	0	0
ZNF443	10224	broad.mit.edu	37	19	12542545	12542545	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:12542545C>T	uc002mtu.2	-	4	639	c.441G>A	c.(439-441)GGG>GGA	p.G147G		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	147	C2H2-type 1; degenerate.				induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						TGAAGGCTTTCCCACGTTGTT	0.418													45	81					0	0	1	0	0
ZNF564	163050	broad.mit.edu	37	19	12638571	12638571	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:12638571G>A	uc002mty.2	-	4	561	c.351C>T	c.(349-351)TCC>TCT	p.S117S	ZNF709_uc002mtx.3_Intron	NM_144976	NP_659413	Q8TBZ8	ZN564_HUMAN	zinc finger protein 564	117	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GCCTACTAAGGGATGAATGAT	0.383													25	65					0	0	1	0	0
NFIX	4784	broad.mit.edu	37	19	13186432	13186432	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:13186432C>T	uc010xmx.1	+	6	979	c.926C>T	c.(925-927)TCC>TTC	p.S309F	NFIX_uc002mwd.2_Missense_Mutation_p.S301F|NFIX_uc002mwe.2_Missense_Mutation_p.S293F|NFIX_uc002mwf.2_Missense_Mutation_p.S304F|NFIX_uc002mwg.1_Missense_Mutation_p.S300F			Q14938	NFIX_HUMAN	RecName: Full=Nuclear factor 1;	301					DNA replication|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			breast(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(19;8.2e-22)			ACAGGCCGTTCCCCAGCAGCT	0.617													7	27					0	0	1	0	0
CYP4F11	57834	broad.mit.edu	37	19	16025445	16025445	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:16025445G>A	uc002nbu.2	-	11	1317	c.1281C>T	c.(1279-1281)ATC>ATT	p.I427I	CYP4F11_uc010eab.1_Intron|CYP4F11_uc002nbt.2_Silent_p.I427I	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	427					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						GGTTGTAATGGATCCCGATAA	0.567													25	78					0	0	1	0	0
CYP4F11	57834	broad.mit.edu	37	19	16034682	16034682	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:16034682G>A	uc002nbu.2	-	7	894	c.858C>T	c.(856-858)TTC>TTT	p.F286F	CYP4F11_uc010eab.1_Silent_p.F286F|CYP4F11_uc002nbt.2_Silent_p.F286F	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	286					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						TGTTCTTGAGGAAATCATCAA	0.532													48	133					0	0	1	0	0
MYO9B	4650	broad.mit.edu	37	19	17322951	17322951	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:17322951C>T	uc010eak.2	+	40	6458	c.6306C>T	c.(6304-6306)CGC>CGT	p.R2102R	MYO9B_uc002nfi.2_3'UTR|MYO9B_uc002nfm.1_3'UTR	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	2102	Tail.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						CACCTGCCCGCCGCCCGGACC	0.726													5	9					0	0	1	0	0
GDF15	9518	broad.mit.edu	37	19	18499390	18499390	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:18499390G>A	uc002niv.2	+	2	604	c.572G>A	c.(571-573)GGG>GAG	p.G191E		NM_004864	NP_004855	Q99988	GDF15_HUMAN	growth differentiation factor 15	191					cell-cell signaling|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			central_nervous_system(1)	1						GCCGCCAGGGGGCGCCGCAGA	0.731											OREG0025363	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	15					0	0	1	0	0
UPF1	5976	broad.mit.edu	37	19	18971692	18971692	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:18971692G>A	uc002nkg.2	+	17	2666	c.2391G>A	c.(2389-2391)AAG>AAA	p.K797K	UPF1_uc002nkf.2_Silent_p.K786K|UPF1_uc002nkh.2_Silent_p.K41K	NM_002911	NP_002902	Q92900	RENT1_HUMAN	regulator of nonsense transcripts 1	797					cell cycle|DNA repair|DNA replication|histone mRNA catabolic process|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational termination	chromatin|cytoplasmic mRNA processing body|exon-exon junction complex	ATP binding|ATP-dependent RNA helicase activity|chromatin binding|DNA binding|protein binding|protein binding|RNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2						CAGGCGCCAAGCCGGACCAGA	0.607													8	11					0	0	1	0	0
ZNF626	199777	broad.mit.edu	37	19	20807848	20807848	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:20807848G>A	uc002npb.1	-	4	985	c.835C>T	c.(835-837)CAT>TAT	p.H279Y	ZNF626_uc002npc.1_Missense_Mutation_p.H203Y	NM_001076675	NP_001070143	Q68DY1	ZN626_HUMAN	zinc finger protein 626 isoform 1	279	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TTTTCCGTATGAATTATCTCA	0.383													12	96					0	0	1	0	0
ZNF493	284443	broad.mit.edu	37	19	21606572	21606572	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:21606572C>T	uc002npx.2	+	2	1007	c.727C>T	c.(727-729)CAT>TAT	p.H243Y	ZNF493_uc002npw.2_Missense_Mutation_p.H371Y|ZNF493_uc002npy.2_Missense_Mutation_p.H243Y	NM_175910	NP_787106	Q6ZR52	ZN493_HUMAN	zinc finger protein 493 isoform 1	243	C2H2-type 8; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TAAAAGAATTCATACTGGAGA	0.343													7	56					0	0	1	0	0
CHST8	64377	broad.mit.edu	37	19	34263943	34263944	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:34263943_34263944CC>TT	uc002nus.3	+	5	1755_1756	c.1250_1251CC>TT	c.(1249-1251)TCC>TTT	p.S417F	CHST8_uc002nut.3_Missense_Mutation_p.S417F|CHST8_uc002nuu.2_Missense_Mutation_p.S417F	NM_001127895	NP_001121367	Q9H2A9	CHST8_HUMAN	carbohydrate (N-acetylgalactosamine 4-0)	417	Lumenal (Potential).				carbohydrate biosynthetic process|central nervous system development|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			skin(2)|large_intestine(1)|ovary(1)	4	Esophageal squamous(110;0.162)					TTCAACTATTCCAAGCCCTTTG	0.619													13	24					0	0	1	0	0
ZBTB32	27033	broad.mit.edu	37	19	36205636	36205636	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:36205636G>A	uc002oay.2	+	2	318	c.108G>A	c.(106-108)GGG>GGA	p.G36G	ZBTB32_uc002oaz.2_RNA	NM_014383	NP_055198	Q9Y2Y4	ZBT32_HUMAN	zinc finger and BTB domain containing 32	36	BTB.				DNA repair|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleoplasm	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;2.22e-07)|Lung NSC(56;3.47e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TCACCGTAGGGAGCCAGGAGT	0.642													38	71					0	0	1	0	0
ZNF260	339324	broad.mit.edu	37	19	37004998	37004998	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:37004998G>A	uc002oee.1	-	4	1987	c.1143C>T	c.(1141-1143)ATC>ATT	p.I381I	ZNF260_uc002oed.1_Silent_p.I378I|ZNF260_uc010eey.1_Silent_p.I378I|ZNF260_uc002oef.1_Silent_p.I378I	NM_001012756	NP_001012774	Q3ZCT1	ZN260_HUMAN	zinc finger protein 260	381	C2H2-type 12.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.162)					CACCAGTATGGATTCTCATGT	0.408													22	91					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38958341	38958341	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:38958341G>A	uc002oit.2	+	25	3400	c.3270G>A	c.(3268-3270)GAG>GAA	p.E1090E	RYR1_uc002oiu.2_Silent_p.E1090E	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1090	6 X approximate repeats.|Cytoplasmic.|B30.2/SPRY 2.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GGTACTTCGAGTTTGAAGCAG	0.587													41	76					0	0	1	0	0
SPTBN4	57731	broad.mit.edu	37	19	41010021	41010021	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:41010021C>T	uc002ony.2	+	12	1733	c.1647C>T	c.(1645-1647)GAC>GAT	p.D549D	SPTBN4_uc002onx.2_Silent_p.D549D|SPTBN4_uc002onz.2_Silent_p.D549D	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	549	Spectrin 4.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			ACATGGTGGACTGGATGGAGG	0.632													12	47					0	0	1	0	0
PSG5	5673	broad.mit.edu	37	19	43680100	43680100	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:43680100C>T	uc002ovu.2	-	3	762	c.631G>A	c.(631-633)GAA>AAA	p.E211K	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Intron|PSG5_uc002ovx.2_Missense_Mutation_p.E211K|PSG5_uc002ovv.2_Missense_Mutation_p.E304K|PSG5_uc002ovw.2_Intron	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	211	Ig-like C2-type 1.				female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				GGTCCTGTTTCATTTCTCGTG	0.502													68	175					0	0	1	0	0
ZNF226	7769	broad.mit.edu	37	19	44681407	44681407	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:44681407C>T	uc002oyp.2	+	6	2136	c.1992C>T	c.(1990-1992)GTC>GTT	p.V664V	ZNF226_uc002oyq.2_Silent_p.V547V|ZNF226_uc002oyr.2_Silent_p.V547V|ZNF226_uc010ejg.2_3'UTR|ZNF226_uc002oys.2_Silent_p.V664V|ZNF226_uc002oyt.2_Silent_p.V664V	NM_001032373	NP_001027545	Q9NYT6	ZN226_HUMAN	zinc finger protein 226 isoform a	664	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				ATCAAAAAGTCCACACTGGAG	0.473													8	111					0	0	1	0	0
ZNF229	7772	broad.mit.edu	37	19	44933628	44933628	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:44933628C>T	uc002oze.1	-	6	1762	c.1328G>A	c.(1327-1329)TGT>TAT	p.C443Y	ZNF229_uc010ejk.1_Missense_Mutation_p.C97Y|ZNF229_uc010ejl.1_Missense_Mutation_p.C437Y	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	443	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				AGACTTGGCACAGAAGCCTTT	0.562													12	47					0	0	1	0	0
SLC1A5	6510	broad.mit.edu	37	19	47285696	47285696	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:47285696G>A	uc002pfs.2	-	4	1388	c.768C>T	c.(766-768)ATC>ATT	p.I256I	SLC1A5_uc010xyh.1_Silent_p.I54I|SLC1A5_uc002pfq.2_Silent_p.I80I|SLC1A5_uc002pfr.2_Silent_p.I28I	NM_005628	NP_005619	Q15758	AAAT_HUMAN	solute carrier family 1 member 5 isoform 1	256					cellular nitrogen compound metabolic process	integral to plasma membrane|melanosome|membrane fraction	neutral amino acid transmembrane transporter activity|protein binding|receptor activity|sodium:dicarboxylate symporter activity				0		all_epithelial(76;0.00314)|Ovarian(192;0.0798)|all_neural(266;0.107)		OV - Ovarian serous cystadenocarcinoma(262;0.000338)|all cancers(93;0.000882)|Epithelial(262;0.0211)|GBM - Glioblastoma multiforme(486;0.0341)	L-Asparagine(DB00174)|L-Glutamine(DB00130)	TGAAGAAGCGGATAAGCAGCT	0.602													33	74					0	0	1	0	0
TEAD2	8463	broad.mit.edu	37	19	49845809	49845809	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:49845809G>A	uc002pnj.2	-	11	1207	c.1116C>T	c.(1114-1116)TAC>TAT	p.Y372Y	uc002pnb.1_5'Flank|TEAD2_uc002png.2_Silent_p.Y375Y|TEAD2_uc002pnh.2_Silent_p.Y376Y|TEAD2_uc002pni.2_Silent_p.Y375Y|TEAD2_uc010yao.1_Silent_p.Y244Y|TEAD2_uc010emw.2_Silent_p.Y375Y	NM_003598	NP_003589	Q15562	TEAD2_HUMAN	TEA domain family member 2	372	Transcriptional activation (Potential).				hippo signaling cascade		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)	3		all_lung(116;7.65e-05)|Lung NSC(112;0.000132)|all_neural(266;0.0506)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00093)|GBM - Glioblastoma multiforme(486;0.0467)		GCAGCAGGCGGTACACAAATC	0.582													19	46					0	0	1	0	0
TSKS	60385	broad.mit.edu	37	19	50265290	50265290	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:50265290G>A	uc002ppm.2	-	2	381	c.370C>T	c.(370-372)CCG>TCG	p.P124S		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	124							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		GCGTCATCCGGATCCCAGGGT	0.632													40	72					0	0	1	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51650496	51650496	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:51650496G>A	uc002pvv.1	+	6	1212	c.1143G>A	c.(1141-1143)AAG>AAA	p.K381K	SIGLEC7_uc002pvw.1_Silent_p.K288K|SIGLEC7_uc010eoq.1_RNA|SIGLEC7_uc010eor.1_Intron	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	381	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		CCTGCAGGAAGAAATCGGCAA	0.572													9	45					0	0	1	0	0
PPP2R1A	5518	broad.mit.edu	37	19	52723474	52723474	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:52723474C>T	uc002pyp.2	+	11	1494	c.1335C>T	c.(1333-1335)TCC>TCT	p.S445S	PPP2R1A_uc010ydk.1_Silent_p.S390S|PPP2R1A_uc002pyq.2_Silent_p.S266S	NM_014225	NP_055040	P30153	2AAA_HUMAN	alpha isoform of regulatory subunit A, protein	445	PP2A subunit C binding.|HEAT 12.				ceramide metabolic process|chromosome segregation|G2/M transition of mitotic cell cycle|inactivation of MAPK activity|induction of apoptosis|negative regulation of cell growth|negative regulation of tyrosine phosphorylation of Stat3 protein|protein complex assembly|protein dephosphorylation|regulation of cell adhesion|regulation of cell differentiation|regulation of DNA replication|regulation of transcription, DNA-dependent|regulation of Wnt receptor signaling pathway|response to organic substance|RNA splicing|second-messenger-mediated signaling	chromosome, centromeric region|cytosol|membrane|microtubule cytoskeleton|mitochondrion|nucleus|protein phosphatase type 2A complex|soluble fraction	antigen binding|protein heterodimerization activity|protein phosphatase type 2A regulator activity			endometrium(31)|ovary(28)|lung(2)|breast(2)|skin(1)|kidney(1)|pancreas(1)	66				GBM - Glioblastoma multiforme(134;0.00456)|OV - Ovarian serous cystadenocarcinoma(262;0.015)		AACTTAACTCCTTGTGCATGG	0.537			Mis		clear cell ovarian carcinoma								29	110					0	0	1	0	0
ZNF808	388558	broad.mit.edu	37	19	53058501	53058501	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:53058501C>T	uc010epq.1	+	5	2509	c.2332C>T	c.(2332-2334)CTT>TTT	p.L778F	ZNF808_uc002pzq.2_RNA|ZNF808_uc010epr.1_5'Flank	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	zinc finger protein 808	778	C2H2-type 20.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		CTGGTCATCCCTTGTATACCA	0.438													25	236					0	0	1	0	0
VN1R2	317701	broad.mit.edu	37	19	53761859	53761859	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:53761859C>T	uc002qbi.2	+	1	315	c.231C>T	c.(229-231)GTC>GTT	p.V77V		NM_173856	NP_776255	Q8NFZ6	VN1R2_HUMAN	vomeronasal 1 receptor 2	77	Cytoplasmic (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0				GBM - Glioblastoma multiforme(134;0.00301)		actctcttgtctctgcacacg	0.09													8	14					0	0	1	0	0
LILRP2	79166	broad.mit.edu	37	19	55220686	55220686	+	RNA	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:55220686G>A	uc002qgs.1	+	1		c.1086G>A			LILRP2_uc002qgt.1_Intron	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						AGGACACTCAGGGGTCCCAGC	0.622													10	27					0	0	1	0	0
NLRP2	55655	broad.mit.edu	37	19	55496482	55496482	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:55496482G>A	uc002qij.2	+	7	2184	c.2098G>A	c.(2098-2100)GAT>AAT	p.D700N	NLRP2_uc010yfp.1_Missense_Mutation_p.D677N|NLRP2_uc010esn.2_Missense_Mutation_p.D676N|NLRP2_uc010eso.2_Missense_Mutation_p.D697N|NLRP2_uc010esp.2_Missense_Mutation_p.D678N	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	700					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		ATCAAATAAGGATCTGATGGG	0.443													34	114					0	0	1	0	0
C19orf51	352909	broad.mit.edu	37	19	55670677	55670677	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:55670677G>T	uc002qji.1	-	12	1413	c.1379C>A	c.(1378-1380)TCA>TAA	p.S460*	TNNI3_uc002qjg.3_5'Flank|TNNI3_uc010yft.1_5'Flank|C19orf51_uc002qjh.1_Nonsense_Mutation_p.S275*|C19orf51_uc002qjj.1_Nonsense_Mutation_p.S507*|C19orf51_uc002qjk.1_Nonsense_Mutation_p.S406*|C19orf51_uc002qjl.1_Nonsense_Mutation_p.S527*			Q8N9W5	CS051_HUMAN	RecName: Full=UPF0470 protein C19orf51;	460											0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		GCCCAGAGCTGATTCCTGGGA	0.622													11	32					3.86212e-05	3.91204e-05	1	1	0
COX6B2	125965	broad.mit.edu	37	19	55865856	55865856	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:55865856C>T	uc002qkn.2	-	2	217	c.34G>A	c.(34-36)GGG>AGG	p.G12R	COX6B2_uc002qkm.2_RNA|COX6B2_uc002qko.2_RNA|COX6B2_uc002qkp.1_Silent_p.R153R	NM_144613	NP_653214	Q6YFQ2	CX6B2_HUMAN	cytochrome c oxidase subunit VIb,	12						mitochondrial crista|mitochondrial intermembrane space	cytochrome-c oxidase activity				0	Breast(117;0.191)	Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0449)		GACCATTTCCCCTTGGGGGGC	0.657													58	147					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56539567	56539567	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:56539567C>T	uc002qmj.2	+	7	1968	c.1968C>T	c.(1966-1968)CCC>CCT	p.P656P	NLRP5_uc002qmi.2_Silent_p.P637P	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	656						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		TGGGCTGTCCCGTTCCCCTGG	0.592													14	77					0	0	1	0	0
ZNF548	147694	broad.mit.edu	37	19	57910085	57910085	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr19:57910085C>T	uc002qom.2	+	3	680	c.430C>T	c.(430-432)CAC>TAC	p.H144Y	ZNF547_uc002qpm.3_Intron|ZNF548_uc002qon.2_Missense_Mutation_p.H147Y	NM_152909	NP_690873	Q8NEK5	ZN548_HUMAN	zinc finger protein 548	144					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TGGGAAGAACCACAGAGTTCA	0.488													18	62					0	0	1	0	0
SNTG2	54221	broad.mit.edu	37	2	1243537	1243537	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:1243537C>T	uc002qwq.2	+	11	1005	c.877C>T	c.(877-879)CCT>TCT	p.P293S	SNTG2_uc010ewi.2_Missense_Mutation_p.P166S	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	293					central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		ATGCTGCTCTCCTTCCGACCA	0.478													9	10					0	0	1	0	0
TPO	7173	broad.mit.edu	37	2	1507821	1507821	+	Missense_Mutation	SNP	G	A	A	rs145974595		TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:1507821G>A	uc002qww.2	+	14	2579	c.2488G>A	c.(2488-2490)GAG>AAG	p.E830K	TPO_uc010ewj.2_RNA|TPO_uc002qwu.2_Missense_Mutation_p.E773K|TPO_uc002qwr.2_Missense_Mutation_p.E830K|TPO_uc002qwx.2_Missense_Mutation_p.E773K|TPO_uc010yio.1_Missense_Mutation_p.E657K|TPO_uc010yip.1_Intron|TPO_uc002qwy.1_Intron|TPO_uc002qwz.2_Intron	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	830	Extracellular (Potential).|EGF-like; calcium-binding (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GGACCCCTACGAGTTAGGAGA	0.562													30	44					0	0	1	0	0
FAM49A	81553	broad.mit.edu	37	2	16740800	16740800	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:16740800C>T	uc010exm.1	-	9	913	c.765G>A	c.(763-765)GTG>GTA	p.V255V	FAM49A_uc002rck.1_Silent_p.V255V	NM_030797	NP_110424	Q9H0Q0	FA49A_HUMAN	family with sequence similarity 49, member A	255						intracellular					0	Acute lymphoblastic leukemia(172;0.0734)|all_hematologic(175;0.088)		GBM - Glioblastoma multiforme(3;0.00969)			CTCCCACCATCACCCTCATGC	0.473													18	61					0	0	1	0	0
SDC1	6382	broad.mit.edu	37	2	20403822	20403822	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:20403822C>T	uc002rdo.1	-	3	678	c.379G>A	c.(379-381)GAG>AAG	p.E127K	SDC1_uc002rdp.1_Missense_Mutation_p.E127K|SDC1_uc010exv.2_Missense_Mutation_p.E127K|SDC1_uc010exw.1_RNA	NM_002997	NP_002988	P18827	SDC1_HUMAN	syndecan 1 precursor	127	Extracellular (Potential).				lipid metabolic process|lipoprotein metabolic process|myoblast development|striated muscle cell development	cytoplasm|extracellular region|focal adhesion|integral to plasma membrane	cytoskeletal protein binding|protein C-terminus binding			ovary(4)|skin(1)	5	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)			OV - Ovarian serous cystadenocarcinoma(76;0.221)		TGTGTGGTCTCCCTGGGTCGG	0.706													26	62					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21225802	21225802	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:21225802G>A	uc002red.2	-	29	12620	c.12492C>T	c.(12490-12492)TTC>TTT	p.F4164F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4164					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TGAGTCCCTGGAAACTGGCTT	0.473													40	98					0	0	1	0	0
ASXL2	55252	broad.mit.edu	37	2	25966697	25966697	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:25966697C>T	uc002rgs.2	-	12	2730	c.2509G>A	c.(2509-2511)GGT>AGT	p.G837S	ASXL2_uc002rgt.1_Missense_Mutation_p.G577S	NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	837					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGAGCAGGACCTGTTGGAGAA	0.517													49	171					0	0	1	0	0
C2orf71	388939	broad.mit.edu	37	2	29294555	29294555	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:29294555G>A	uc002rmt.1	-	1	2573	c.2573C>T	c.(2572-2574)TCC>TTC	p.S858F		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	858					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						TTCCTTGGGGGAGTTCTCTGT	0.607													25	85					0	0	1	0	0
EHD3	30845	broad.mit.edu	37	2	31489165	31489165	+	Silent	SNP	G	A	A	rs148671842	byFrequency	TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:31489165G>A	uc002rnu.2	+	6	1811	c.1203G>A	c.(1201-1203)GAG>GAA	p.E401E	EHD3_uc010ymt.1_3'UTR	NM_014600	NP_055415	Q9NZN3	EHD3_HUMAN	EH-domain containing 3	401					blood coagulation|endocytic recycling|protein homooligomerization	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding|protein binding			skin(2)	2	Acute lymphoblastic leukemia(172;0.155)					GCCAGGAGGAGTCACAGCGGC	0.622													4	59					0	0	1	0	0
STRN	6801	broad.mit.edu	37	2	37076681	37076681	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:37076681G>A	uc002rpn.2	-	18	2270	c.2261C>T	c.(2260-2262)TCG>TTG	p.S754L	STRN_uc010ezx.2_Missense_Mutation_p.S717L	NM_003162	NP_003153	O43815	STRN_HUMAN	striatin, calmodulin binding protein	754	WD 6.				dendrite development|locomotory behavior|negative regulation of cell proliferation|tight junction assembly|Wnt receptor signaling pathway	cytoplasm|dendritic spine|neuronal cell body|postsynaptic density|postsynaptic membrane|tight junction	armadillo repeat domain binding|calmodulin binding|estrogen receptor binding|protein complex binding|protein phosphatase 2A binding			skin(1)	1		Ovarian(717;0.0129)|all_hematologic(82;0.21)				ATCATGAATCGATTCTTCAAA	0.393													23	65					0	0	1	0	0
TMEM178	130733	broad.mit.edu	37	2	39931233	39931233	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:39931233G>A	uc002rrt.2	+	2	438	c.413G>A	c.(412-414)CGA>CAA	p.R138Q	TMEM178_uc010fam.1_Missense_Mutation_p.R138Q	NM_152390	NP_689603	Q8NBL3	TM178_HUMAN	transmembrane protein 178 precursor	138	Extracellular (Potential).					integral to membrane					0		all_hematologic(82;0.248)				ATTGCGCAGCGATGCACGGCC	0.448													23	29					0	0	1	0	0
NRXN1	9378	broad.mit.edu	37	2	51254841	51254841	+	Missense_Mutation	SNP	A	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:51254841A>C	uc010fbq.2	-	2	2048	c.571T>G	c.(571-573)TCC>GCC	p.S191A	NRXN1_uc002rxe.3_Missense_Mutation_p.S191A|NRXN1_uc002rxd.1_Missense_Mutation_p.S191A	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			ACCTGCGAGGAGTTGACCCTC	0.716													3	14					0	0	1	0	0
GPR75	10936	broad.mit.edu	37	2	54081330	54081330	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:54081330G>A	uc002rxo.3	-	2	835	c.564C>T	c.(562-564)CTC>CTT	p.L188L	ASB3_uc002rxi.3_Intron	NM_006794	NP_006785	O95800	GPR75_HUMAN	G protein-coupled receptor 75	188	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|skin(1)	2			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			TGGGAAGACAGAGGTGGGACT	0.532													17	49					0	0	1	0	0
LOC388955	388955	broad.mit.edu	37	2	63849691	63849691	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:63849691G>A	uc002sck.1	-	1	469	c.275C>T	c.(274-276)ACC>ATC	p.T92I		NR_003131				SubName: Full=Px19-like protein, isoform CRA_c; SubName: Full=cDNA, FLJ92457, Homo sapiens px19-like protein (PX19), mRNA;												0						GGTAGTCATGGTCTGATTCTG	0.522													17	34					0	0	1	0	0
PROKR1	10887	broad.mit.edu	37	2	68882249	68882249	+	Silent	SNP	C	T	T	rs146411193		TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:68882249C>T	uc010yqj.1	+	2	723	c.723C>T	c.(721-723)TTC>TTT	p.F241F	PROKR1_uc002ses.2_RNA	NM_138964	NP_620414	Q8TCW9	PKR1_HUMAN	G protein-coupled receptor 73	241	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(1)	1						GCATAGAATTCGTGGGCCCCG	0.547													7	109					0	0	1	0	0
ARHGAP25	9938	broad.mit.edu	37	2	69049603	69049603	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:69049603C>T	uc002seu.2	+	10	1693	c.1329C>T	c.(1327-1329)CTC>CTT	p.L443L	ARHGAP25_uc010fdg.2_Silent_p.L444L|ARHGAP25_uc010yql.1_Silent_p.L404L|ARHGAP25_uc002sew.2_Silent_p.L436L|ARHGAP25_uc002sex.2_Silent_p.L437L|ARHGAP25_uc002sey.2_Silent_p.L170L	NM_001007231	NP_001007232	P42331	RHG25_HUMAN	Rho GTPase activating protein 25 isoform a	443					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|breast(2)	4						CTCAAACACTCCCTAACCGGA	0.483													50	111					0	0	1	0	0
ZNF638	27332	broad.mit.edu	37	2	71650107	71650107	+	Missense_Mutation	SNP	A	C	C	rs144082774		TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:71650107A>C	uc002shx.2	+	22	3782	c.3463A>C	c.(3463-3465)ACA>CCA	p.T1155P	ZNF638_uc010yqw.1_Missense_Mutation_p.T734P|ZNF638_uc002shy.2_Missense_Mutation_p.T1155P|ZNF638_uc002shz.2_Missense_Mutation_p.T1155P|ZNF638_uc002sia.2_Missense_Mutation_p.T1155P|ZNF638_uc002sib.1_Intron|ZNF638_uc010fed.2_Intron|ZNF638_uc002sic.2_Missense_Mutation_p.T252P|ZNF638_uc002sid.2_Intron	NM_014497	NP_055312	Q14966	ZN638_HUMAN	zinc finger protein 638	1155	Glu-rich.				RNA splicing	cytoplasm|nuclear speck	double-stranded DNA binding|nucleotide binding|RNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						TGAAAAAGCAACATGTGATTC	0.413													45	101					0	0	1	0	0
VWA3B	200403	broad.mit.edu	37	2	98887257	98887257	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:98887257G>A	uc002syo.2	+	22	3220	c.2956G>A	c.(2956-2958)GAA>AAA	p.E986K	VWA3B_uc002sym.2_Missense_Mutation_p.E986K|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.E643K|VWA3B_uc002syp.1_Missense_Mutation_p.E378K|VWA3B_uc002syq.1_Missense_Mutation_p.E262K|VWA3B_uc002syr.1_Missense_Mutation_p.E303K|VWA3B_uc002sys.2_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	986										ovary(3)|large_intestine(2)|skin(1)	6						GCTGGAAAGTGAAATCCTAGC	0.473													55	88					0	0	1	0	0
IL18RAP	8807	broad.mit.edu	37	2	103053675	103053675	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:103053675G>A	uc002tbx.2	+	6	1067	c.583G>A	c.(583-585)GGA>AGA	p.G195R	IL18RAP_uc010fiz.2_Missense_Mutation_p.G53R	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	195	Ig-like C2-type 1.|Extracellular (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						GGATTAGAATGGAAAACTCCT	0.358													17	52					0	0	1	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107446526	107446526	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:107446526G>A	uc002tdq.2	-	5	1433	c.1314C>T	c.(1312-1314)TTC>TTT	p.F438F	ST6GAL2_uc002tdr.2_Silent_p.F438F|ST6GAL2_uc002tds.3_Silent_p.F438F	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	438	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						ACCTACCAATGAAACCAGAAG	0.328													35	100					0	0	1	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107459984	107459984	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:107459984G>A	uc002tdq.2	-	2	569	c.450C>T	c.(448-450)TTC>TTT	p.F150F	ST6GAL2_uc002tdr.2_Silent_p.F150F|ST6GAL2_uc002tds.3_Silent_p.F150F	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	150	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CGGGGGAAGGGAATCCCAATG	0.612													85	155					0	0	1	0	0
SEPT10	151011	broad.mit.edu	37	2	110322028	110322028	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:110322028G>A	uc002tew.2	-	8	1322	c.943C>T	c.(943-945)CAT>TAT	p.H315Y	SEPT10_uc010ywu.1_Missense_Mutation_p.H148Y|SEPT10_uc002tex.2_Missense_Mutation_p.H292Y|SEPT10_uc002tey.2_Missense_Mutation_p.H315Y|SEPT10_uc010ywv.1_Missense_Mutation_p.H181Y|SEPT10_uc002tev.1_Missense_Mutation_p.H122Y|SEPT10_uc010fjo.2_RNA|SEPT10_uc002tez.1_Missense_Mutation_p.H90Y	NM_144710	NP_653311	Q9P0V9	SEP10_HUMAN	septin 10 isoform 1	315					cell cycle|cell division	septin complex	GTP binding				0						TGCCTGGTATGGGTCTGCTCT	0.468													42	65					0	0	1	0	0
FBLN7	129804	broad.mit.edu	37	2	112940451	112940451	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:112940451C>T	uc002tho.1	+	6	1025	c.754C>T	c.(754-756)CGT>TGT	p.R252C	FBLN7_uc002thn.2_Missense_Mutation_p.R252C|FBLN7_uc010fki.1_Missense_Mutation_p.R206C|FBLN7_uc010fkj.1_Intron	NM_153214	NP_694946	Q53RD9	FBLN7_HUMAN	fibulin 7 isoform 1	252	EGF-like 2; calcium-binding (Potential).				cell adhesion	proteinaceous extracellular matrix	calcium ion binding|heparin binding			ovary(1)|central_nervous_system(1)	2						GGGCTCTTACCGTTGCACCTG	0.637													23	57					0	0	1	0	0
IL1F6	27179	broad.mit.edu	37	2	113765571	113765571	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:113765571G>A	uc010yxr.1	+	4	427	c.427G>A	c.(427-429)GAA>AAA	p.E143K		NM_014440	NP_055255	Q9UHA7	IL36A_HUMAN	interleukin 1 family, member 6 (epsilon)	143					immune response|inflammatory response	extracellular space	cytokine activity|interleukin-1 receptor binding				0						CCTTACCCAAGAACTGGGGAA	0.498													27	58					0	0	1	0	0
DDX18	8886	broad.mit.edu	37	2	118583901	118583901	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:118583901C>T	uc002tlh.1	+	11	1677	c.1578C>T	c.(1576-1578)GCC>GCT	p.A526A		NM_006773	NP_006764	Q9NVP1	DDX18_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	526	Helicase C-terminal.						ATP binding|ATP-dependent RNA helicase activity|RNA binding			breast(2)|ovary(1)|lung(1)	4						GAGGGCATGCCTTGCTCATTT	0.443													20	30					0	0	1	0	0
POTEF	728378	broad.mit.edu	37	2	130872803	130872803	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:130872803C>T	uc010fmh.2	-	4	1020	c.620G>A	c.(619-621)AGG>AAG	p.R207K		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	207	ANK 2.					cell cortex	ATP binding			skin(3)|ovary(2)	5						CAGAGCTGTCCTCTTTTTGTT	0.398													8	76					0	0	1	0	0
LOC401010	401010	broad.mit.edu	37	2	132200789	132200790	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:132200789_132200790GG>AA	uc002tst.2	-	1	1678_1679	c.1212_1213CC>TT	c.(1210-1215)CTCCGG>CTTTGG	p.R405W		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						TTGCACTCCCGGAGGAACGACT	0.634													9	14					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133542749	133542749	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:133542749G>A	uc002ttp.2	-	14	2009	c.1635C>T	c.(1633-1635)CCC>CCT	p.P545P	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	545							protein binding				0						TCATCTCTAAGGGACAGCTGC	0.562													47	104					0	0	1	0	0
TMEM163	81615	broad.mit.edu	37	2	135470881	135470881	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:135470881C>T	uc002ttx.2	-	2	277	c.211G>A	c.(211-213)GAA>AAA	p.E71K	TMEM163_uc002tty.2_RNA	NM_030923	NP_112185	Q8TC26	TM163_HUMAN	transmembrane protein 163	71						integral to membrane					0				BRCA - Breast invasive adenocarcinoma(221;0.154)		GTGCTGCTTTCTAGTAAGCCT	0.458													33	74					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	137917887	137917887	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:137917887G>A	uc002tva.1	+	5	1381	c.1381G>A	c.(1381-1383)GCC>ACC	p.A461T	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.A351T	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TTCCTGGTCAGCCTGGGGCCT	0.512													9	61					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	137928454	137928454	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:137928454G>A	uc002tva.1	+	6	1576	c.1576G>A	c.(1576-1578)GGA>AGA	p.G526R	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.G416R	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CCCTGATCATGGAAAATGTGG	0.522													13	21					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138330037	138330037	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:138330037G>A	uc002tva.1	+	16	3247	c.3247G>A	c.(3247-3249)GAA>AAA	p.E1083K	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CAACCAGGATGAAATTCCCCC	0.448													12	28					0	0	1	0	0
KCNH7	90134	broad.mit.edu	37	2	163253416	163253416	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:163253416G>A	uc002uch.1	-	11	2659	c.2447C>T	c.(2446-2448)GCC>GTC	p.A816V		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	816	Cytoplasmic (Potential).|cNMP.				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TCCAGGTTTGGCATAAAGATG	0.373													21	34					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166245961	166245961	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:166245961G>A	uc002udc.2	+	27	5935	c.5645G>A	c.(5644-5646)CGA>CAA	p.R1882Q	SCN2A_uc002udd.2_Missense_Mutation_p.R1882Q|SCN2A_uc002ude.2_Missense_Mutation_p.R1882Q	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1882					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	ATGGAAGAGCGATTCATGGCA	0.468													8	62					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166894589	166894589	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:166894589C>T	uc010zcz.1	-	15	2628	c.2610G>A	c.(2608-2610)AAG>AAA	p.K870K	SCN1A_uc002udo.3_Silent_p.K750K|SCN1A_uc010fpk.2_Silent_p.K722K	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	881	II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TGCCGATGATCTTTATTAGCA	0.398													23	65					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168100111	168100111	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:168100111G>A	uc002udx.2	+	8	2227	c.2209G>A	c.(2209-2211)GAA>AAA	p.E737K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E562K|XIRP2_uc010fpq.2_Missense_Mutation_p.E515K|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	562	Xin 6.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AAAATGTTTCGAAACTCAACC	0.373													21	53					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168100393	168100393	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:168100393G>A	uc002udx.2	+	8	2509	c.2491G>A	c.(2491-2493)GAA>AAA	p.E831K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E656K|XIRP2_uc010fpq.2_Missense_Mutation_p.E609K|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	656					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CATTGAAAAGGAAAAAATAAT	0.388													26	68					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168106629	168106629	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:168106629C>T	uc002udx.2	+	8	8745	c.8727C>T	c.(8725-8727)GTC>GTT	p.V2909V	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.V2734V|XIRP2_uc010fpq.2_Silent_p.V2687V|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Silent_p.V255V	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2734					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AGAAACAAGTCTTCTCTAATA	0.388													37	62					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170066148	170066148	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:170066148C>T	uc002ues.2	-	38	6497	c.6284G>A	c.(6283-6285)CGA>CAA	p.R2095Q		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2095	Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CAGTGCGTTTCGTCCTGGAAG	0.413													19	44					0	0	1	0	0
CDCA7	83879	broad.mit.edu	37	2	174223442	174223442	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:174223442G>A	uc002uid.1	+	2	155	c.24G>A	c.(22-24)CAG>CAA	p.Q8Q	CDCA7_uc002uic.1_Silent_p.Q8Q|CDCA7_uc010zej.1_Silent_p.Q8Q|CDCA7_uc010zek.1_Intron	NM_145810	NP_665809	Q9BWT1	CDCA7_HUMAN	cell division cycle associated 7 isoform 2	8					regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.116)			ATTTGCAGCAGAAAGATCTCA	0.348													13	28					0	0	1	0	0
DFNB59	494513	broad.mit.edu	37	2	179323290	179323291	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:179323290_179323291CC>TT	uc002umi.3	+	5	959_960	c.603_604CC>TT	c.(601-606)TTCCCA>TTTTCA	p.P202S	DFNB59_uc002umj.3_Missense_Mutation_p.P202S	NM_001042702	NP_001036167	Q0ZLH3	PJVK_HUMAN	deafness, autosomal recessive 59	202					sensory perception of sound						0			OV - Ovarian serous cystadenocarcinoma(117;0.00406)|Epithelial(96;0.0159)|all cancers(119;0.0564)			CTATTGTTTTCCCAGCACATAC	0.342													26	86					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179419273	179419273	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:179419273C>T	uc010zfg.1	-	281	81321	c.81097G>A	c.(81097-81099)GGA>AGA	p.G27033R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G20728R|TTN_uc010zfi.1_Missense_Mutation_p.G20661R|TTN_uc010zfj.1_Missense_Mutation_p.G20536R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	27960							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATTCATTTCCTTTGATAATT	0.453													9	49					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179528071	179528071	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:179528071C>T	uc010zfk.1	-	18	1608	c.1060G>A	c.(1060-1062)GAG>AAG	p.E354K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron			Q8WZ42	TITIN_HUMAN	SubName: Full=Titin; Flags: Fragment;	11566							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTGGCACCTCTGGGACTTTA	0.418													26	70					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179604946	179604946	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:179604946C>T	uc010zfh.1	-	46	12725	c.12501G>A	c.(12499-12501)CAG>CAA	p.Q4167Q	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Silent_p.Q4100Q|TTN_uc010zfj.1_Silent_p.Q3975Q|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	4094							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGAGCAGTACCTGCTTTTCTT	0.458													22	79					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179616629	179616629	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:179616629C>T	uc002unb.2	-	46	10722	c.10498G>A	c.(10498-10500)GAA>AAA	p.E3500K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	3499							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTAAAATATTCAGGCCAGGAG	0.383													55	128					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179640361	179640361	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:179640361G>A	uc010zfg.1	-	28	6454	c.6230C>T	c.(6229-6231)GCT>GTT	p.A2077V	TTN_uc010zfh.1_Missense_Mutation_p.A2031V|TTN_uc010zfi.1_Missense_Mutation_p.A2031V|TTN_uc010zfj.1_Missense_Mutation_p.A2031V|TTN_uc002unb.2_Missense_Mutation_p.A2077V|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2077							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATTTTTGGAGCCTCCATACT	0.458													31	58					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179647693	179647693	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:179647693G>A	uc010zfg.1	-	18	3164	c.2940C>T	c.(2938-2940)GAC>GAT	p.D980D	TTN_uc010zfh.1_Silent_p.D934D|TTN_uc010zfi.1_Silent_p.D934D|TTN_uc010zfj.1_Silent_p.D934D|TTN_uc002unb.2_Silent_p.D980D	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	980							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGATTTGGTAGTCTTCCCTGT	0.468													23	78					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185801948	185801948	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:185801948G>A	uc002uph.2	+	4	2419	c.1825G>A	c.(1825-1827)GAG>AAG	p.E609K		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	609						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TCATCATATGGAGAAAACCAA	0.328													23	80					0	0	1	0	0
COL3A1	1281	broad.mit.edu	37	2	189872299	189872299	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:189872299G>A	uc002uqj.1	+	45	3446	c.3329G>A	c.(3328-3330)GGA>GAA	p.G1110E		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	1110	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GGACATCGAGGATTCCCTGGT	0.428													5	15					0	0	1	0	0
HECW2	57520	broad.mit.edu	37	2	197081790	197081790	+	Missense_Mutation	SNP	C	A	A	rs143511416		TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:197081790C>A	uc002utm.1	-	27	4619	c.4436G>T	c.(4435-4437)CGG>CTG	p.R1479L	HECW2_uc002utl.1_Missense_Mutation_p.R1123L	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	1479	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						CCAGAACCACCGAATTACAAT	0.358													24	78					1.85244e-09	1.89195e-09	1	1	0
SF3B1	23451	broad.mit.edu	37	2	198274577	198274577	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:198274577G>A	uc002uue.2	-	7	869	c.821C>T	c.(820-822)CCA>CTA	p.P274L		NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	274	Interaction with PPP1R8.				nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			CGCATGGCCTGGTGTATCACC	0.547													79	175					0	0	1	0	0
CD28	940	broad.mit.edu	37	2	204594378	204594378	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:204594378C>T	uc002vah.3	+	3	639	c.417C>T	c.(415-417)CAC>CAT	p.H139H	CD28_uc002vag.1_RNA|CD28_uc010zio.1_RNA|CD28_uc010ftx.2_Silent_p.H20H|CD28_uc002vaj.3_Intron	NM_006139	NP_006130	P10747	CD28_HUMAN	CD28 antigen precursor	139	Extracellular (Potential).				cell surface receptor linked signaling pathway|cytokine biosynthetic process|humoral immune response|positive regulation of anti-apoptosis|positive regulation of interleukin-2 biosynthetic process|positive regulation of mitosis|positive regulation of translation|positive regulation of viral genome replication|regulation of defense response to virus by virus|regulatory T cell differentiation|T cell costimulation|viral reproduction	cytosol|external side of plasma membrane|integral to plasma membrane	coreceptor activity|protease binding|SH3/SH2 adaptor activity				0						CAGGGAAACACCTTTGTCCAA	0.433													51	100					0	0	1	0	0
SMARCAL1	50485	broad.mit.edu	37	2	217315660	217315660	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:217315660C>T	uc002vgc.3	+	12	2273	c.1943C>T	c.(1942-1944)TCC>TTC	p.S648F	SMARCAL1_uc010fvf.2_RNA|SMARCAL1_uc002vgd.3_Missense_Mutation_p.S648F|SMARCAL1_uc010fvg.2_Missense_Mutation_p.S626F	NM_014140	NP_054859	Q9NZC9	SMAL1_HUMAN	SWI/SNF-related matrix-associated	648					chromatin modification|DNA metabolic process|regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity			ovary(3)|breast(3)|skin(1)	7		Renal(323;0.0458)		Epithelial(149;9.48e-06)|all cancers(144;0.000621)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0111)		CGCCTCAAGTCCGACGTCCTT	0.612									Schimke_Immuno-Osseous_Dysplasia				32	61					0	0	1	0	0
STK16	8576	broad.mit.edu	37	2	220111842	220111842	+	Missense_Mutation	SNP	C	G	G			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:220111842C>G	uc002vko.2	+	4	471	c.314C>G	c.(313-315)ACG>AGG	p.T105R	GLB1L_uc002vkm.2_5'Flank|GLB1L_uc002vkn.2_5'Flank|STK16_uc002vks.2_Intron|STK16_uc010zky.1_Missense_Mutation_p.T105R|STK16_uc010fwf.2_Missense_Mutation_p.T105R|STK16_uc002vkp.2_Missense_Mutation_p.T105R|STK16_uc002vkr.2_Missense_Mutation_p.T38R|STK16_uc002vkq.2_Missense_Mutation_p.T150R	NM_001008910	NP_001008910	O75716	STK16_HUMAN	serine/threonine kinase 16	105	Protein kinase.				protein complex assembly	membrane	ATP binding|protein binding|protein serine/threonine kinase activity			skin(1)	1		Renal(207;0.0474)		Epithelial(149;1.2e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CAGAGAGGTACGCTGTGGAAT	0.517													19	27					0	0	1	0	0
PAX3	5077	broad.mit.edu	37	2	223085957	223085957	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:223085957G>A	uc010fwo.2	-	6	1308	c.942C>T	c.(940-942)CCC>CCT	p.P314P	PAX3_uc002vmt.1_Silent_p.P314P|PAX3_uc002vmy.1_Silent_p.P313P|PAX3_uc002vmv.1_Silent_p.P314P|PAX3_uc002vmw.1_Silent_p.P314P|PAX3_uc002vmx.1_Silent_p.P314P	NM_181457	NP_852122	P23760	PAX3_HUMAN	paired box 3 isoform PAX3	314					apoptosis|organ morphogenesis|positive regulation of transcription from RNA polymerase II promoter|sensory perception of sound|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		PAX3/FOXO1(749)|PAX3/NCOA1(8)|PAX3/NCOA2(4)	soft_tissue(761)|ovary(4)|skin(1)	766		Renal(207;0.0183)		Epithelial(121;4.13e-10)|all cancers(144;1.85e-07)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GAATAGATGTGGGCTGGTAAG	0.498			T	FOXO1A|NCOA1	alveolar rhabdomyosarcoma		Waardenburg syndrome; craniofacial-deafness-hand syndrome						108	227					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227886864	227886864	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:227886864C>T	uc010zlt.1	-	43	4770	c.4116G>A	c.(4114-4116)GTG>GTA	p.V1372V		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1372	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		GACAGTCATCCACATCTGCAG	0.567													47	248					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227963492	227963492	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:227963492G>A	uc010zlt.1	-	19	1776	c.1122C>T	c.(1120-1122)TTC>TTT	p.F374F		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	374	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		AGCGGCCAGGGAACCCTGGGT	0.502													22	44					0	0	1	0	0
COL4A3	1285	broad.mit.edu	37	2	228163401	228163401	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:228163401C>T	uc002vom.1	+	43	3917	c.3755C>T	c.(3754-3756)GCG>GTG	p.A1252V	COL4A3_uc002von.1_Missense_Mutation_p.A1252V|COL4A3_uc002voo.1_Missense_Mutation_p.A1252V|COL4A3_uc002vop.1_Missense_Mutation_p.A1252V|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	1252	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		AATTCAGGTGCGCCTGGTCCC	0.483													7	53					0	0	1	0	0
WDR69	164781	broad.mit.edu	37	2	228758521	228758521	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:228758521G>A	uc002vpn.1	+	5	407	c.328G>A	c.(328-330)GGA>AGA	p.G110R	WDR69_uc010zlw.1_Missense_Mutation_p.G95R|WDR69_uc002vpo.1_RNA	NM_178821	NP_849143	Q8N136	WDR69_HUMAN	WD repeat domain 69	110	WD 1.									breast(1)	1		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;1.22e-10)|all cancers(144;8.11e-08)|Lung(261;0.011)|LUSC - Lung squamous cell carcinoma(224;0.0148)		CTTTATCACAGGAAGCTATGA	0.443													19	37					0	0	1	0	0
IQCA1	79781	broad.mit.edu	37	2	237272523	237272523	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:237272523G>A	uc002vvz.1	-	15	1951	c.1769C>T	c.(1768-1770)ACC>ATC	p.T590I	IQCA1_uc002vwb.2_Missense_Mutation_p.T598I|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Missense_Mutation_p.T549I	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	590							ATP binding			ovary(1)	1						TCCCGTTTCGGTGCAGATGGC	0.517													31	70					0	0	1	0	0
PASK	23178	broad.mit.edu	37	2	242062183	242062183	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr2:242062183G>A	uc002wao.1	-	12	3128	c.3036C>T	c.(3034-3036)TTC>TTT	p.F1012F	PASK_uc010zol.1_Silent_p.F826F|PASK_uc010zom.1_Silent_p.F977F|PASK_uc010fzl.1_Silent_p.F1012F|PASK_uc010zon.1_Silent_p.F793F|PASK_uc002wap.2_Silent_p.F555F|PASK_uc002waq.2_Silent_p.F1012F	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	1012	ATP (By similarity).|Protein kinase.				regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		CAGTCCACACGAAGCCGAAGG	0.612													36	93					0	0	1	0	0
ProSAPiP1	9762	broad.mit.edu	37	20	3146945	3146945	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr20:3146945G>A	uc002wia.1	-	2	1919	c.521C>T	c.(520-522)TCC>TTC	p.S174F	ProSAPiP1_uc002wib.1_Missense_Mutation_p.S174F	NM_014731	NP_055546	O60299	PRIP1_HUMAN	ProSAPiP1 protein	174						cell junction|cytoplasm|postsynaptic density|postsynaptic membrane				pancreas(1)	1						ATTCTGCATGGAGTGGAAATT	0.607													5	23					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9351884	9351884	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr20:9351884G>A	uc002wnf.2	+	9	663	c.527G>A	c.(526-528)GGA>GAA	p.G176E	PLCB4_uc010gbw.1_Missense_Mutation_p.G176E|PLCB4_uc010gbx.2_Missense_Mutation_p.G176E|PLCB4_uc002wne.2_Missense_Mutation_p.G176E|PLCB4_uc002wnh.2_Missense_Mutation_p.G23E	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	176					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						TTTGCATCGGGAAAAACAGAA	0.353													24	93					0	0	1	0	0
DTD1	92675	broad.mit.edu	37	20	18574378	18574378	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr20:18574378G>A	uc002wrf.3	+	2	208	c.47G>A	c.(46-48)GGA>GAA	p.G16E		NM_080820	NP_543010	Q8TEA8	DTD1_HUMAN	D-tyrosyl-tRNA deacylase 1	16					D-amino acid catabolic process	cytoplasm	hydrolase activity, acting on ester bonds			ovary(2)	2						TTTCTAGTTGGAGGAGAGCAG	0.413													3	26					0	0	1	0	0
GINS1	9837	broad.mit.edu	37	20	25405940	25405940	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr20:25405940C>T	uc002wuv.1	+	5	558	c.424C>T	c.(424-426)CCA>TCA	p.P142S	GINS1_uc010zte.1_RNA	NM_021067	NP_066545	Q14691	PSF1_HUMAN	GINS complex subunit 1	142					DNA strand elongation involved in DNA replication|S phase of mitotic cell cycle	cytoplasm|nucleoplasm				ovary(1)|central_nervous_system(1)	2						GGATATGAAACCACCAAAAAG	0.318													24	51					0	0	1	0	0
NINL	22981	broad.mit.edu	37	20	25456969	25456969	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr20:25456969C>T	uc002wux.1	-	17	3032	c.2958G>A	c.(2956-2958)TGG>TGA	p.W986*	NINL_uc010gdn.1_Intron	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	986					G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						TGCCCCTGCTCCAGCTTCGTG	0.692													33	65					0	0	1	0	0
MYLK2	85366	broad.mit.edu	37	20	30419615	30419615	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr20:30419615G>A	uc002wwq.2	+	11	1636	c.1534G>A	c.(1534-1536)GAG>AAG	p.E512K	MYLK2_uc002wws.2_Missense_Mutation_p.E129K|MYLK2_uc010gdw.1_RNA	NM_033118	NP_149109	Q9H1R3	MYLK2_HUMAN	skeletal myosin light chain kinase	512	Protein kinase.				cardiac muscle tissue morphogenesis|regulation of muscle filament sliding		ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			lung(2)|skin(2)|ovary(1)|central_nervous_system(1)	6			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			CGTATCAGACGAGGCCAAAGA	0.512													28	66					0	0	1	0	0
KIF3B	9371	broad.mit.edu	37	20	30897927	30897927	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr20:30897927G>A	uc002wxq.2	+	2	514	c.347G>A	c.(346-348)AGA>AAA	p.R116K	KIF3B_uc010ztv.1_Missense_Mutation_p.R116K|KIF3B_uc010ztw.1_Missense_Mutation_p.R116K	NM_004798	NP_004789	O15066	KIF3B_HUMAN	kinesin family member 3B	116	Kinesin-motor.				anterograde axon cargo transport|blood coagulation|determination of left/right symmetry|mitotic centrosome separation|plus-end-directed vesicle transport along microtubule|spindle assembly involved in mitosis	centrosome|cytosol|kinesin II complex|plus-end kinesin complex|spindle microtubule	ATP binding|plus-end-directed microtubule motor activity|Rho GTPase binding			central_nervous_system(3)|ovary(2)	5			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CCTGAAAAAAGAGGAGTCATT	0.448													27	45					0	0	1	0	0
BPIL3	128859	broad.mit.edu	37	20	31625434	31625434	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr20:31625434C>T	uc010zuc.1	+	8	736	c.736C>T	c.(736-738)CCT>TCT	p.P246S	BPIL3_uc010zud.1_Missense_Mutation_p.P185S	NM_174897	NP_777557	Q8NFQ5	BPIL3_HUMAN	bactericidal/permeability-increasing	246						extracellular region	lipid binding			ovary(1)|pancreas(1)	2						CCTCACGTTCCCTGAGGGTTA	0.577													27	74					0	0	1	0	0
C20orf185	359710	broad.mit.edu	37	20	31643310	31643311	+	Missense_Mutation	DNP	GG	AA	AA	rs149497264		TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr20:31643310_31643311GG>AA	uc002wym.1	+	1	81_82	c.81_82GG>AA	c.(79-84)ACGGTG>ACAATG	p.V28M		NM_182658	NP_872599	P59826	LPLC3_HUMAN	antimicrobial peptide RYA3 precursor	28	Leu-rich.				innate immune response	cytoplasm|extracellular region	lipid binding|protein binding			ovary(4)	4						TGCTAGAGACGGTGGGCACGCT	0.599													34	61					0	0	1	0	0
DLGAP4	22839	broad.mit.edu	37	20	35060148	35060148	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr20:35060148C>T	uc002xff.2	+	3	463	c.28C>T	c.(28-30)CGC>TGC	p.R10C	DLGAP4_uc010zvp.1_Missense_Mutation_p.R10C	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	10					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				CAGCCGCCCCCGCCACCTCTC	0.716													23	44					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	41306773	41306773	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr20:41306773C>T	uc002xkg.2	-	7	1070	c.886G>A	c.(886-888)GAG>AAG	p.E296K	PTPRT_uc010ggj.2_Missense_Mutation_p.E296K	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	296	Extracellular (Potential).|Fibronectin type-III 1.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GCCAGCAGCTCTGGGGGAGCA	0.517													11	31					0	0	1	0	0
MYBL2	4605	broad.mit.edu	37	20	42331466	42331466	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr20:42331466C>T	uc002xlb.1	+	8	1503	c.1288C>T	c.(1288-1290)CTG>TTG	p.L430L	MYBL2_uc010zwj.1_Silent_p.L406L|MYBL2_uc002xla.1_Silent_p.L430L	NM_002466	NP_002457	P10244	MYBB_HUMAN	MYB-related protein B	430						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(3)|kidney(2)	5		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			TAGCACCAGTCTGTCCTTCCT	0.612													12	97					0	0	1	0	0
SEMG1	6406	broad.mit.edu	37	20	43836434	43836434	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr20:43836434C>T	uc002xni.2	+	2	553	c.496C>T	c.(496-498)CTG>TTG	p.L166L	SEMG1_uc002xnj.2_Silent_p.L166L|SEMG2_uc010ggz.2_Intron|SEMG1_uc002xnh.2_Silent_p.L166L	NM_003007	NP_002998	P04279	SEMG1_HUMAN	semenogelin I preproprotein	166					insemination|sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(2)	2		Myeloproliferative disorder(115;0.0122)				AGAAGAAAGGCTGTGGGTTCA	0.438													26	84					0	0	1	0	0
MATN4	8785	broad.mit.edu	37	20	43932896	43932896	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr20:43932896G>A	uc002xnn.2	-	3	802	c.615C>T	c.(613-615)TTC>TTT	p.F205F	MATN4_uc002xno.2_Silent_p.F205F|MATN4_uc002xnp.2_Silent_p.F205F|MATN4_uc010zwr.1_Silent_p.F153F|MATN4_uc002xnr.1_Silent_p.F205F|RBPJL_uc002xns.2_5'Flank|RBPJL_uc002xnt.2_5'Flank	NM_003833	NP_003824	O95460	MATN4_HUMAN	matrilin 4 isoform 1 precursor	205	VWFA 1.					extracellular region	protein binding				0		Myeloproliferative disorder(115;0.0122)				ACTGCAGGCCGAACTCCTGGA	0.617													30	61					0	0	1	0	0
SULF2	55959	broad.mit.edu	37	20	46365660	46365660	+	Missense_Mutation	SNP	G	A	A	rs116489181	by1000genomes	TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr20:46365660G>A	uc002xto.2	-	3	532	c.202C>T	c.(202-204)CGG>TGG	p.R68W	SULF2_uc002xtr.2_Missense_Mutation_p.R68W|SULF2_uc002xtq.2_Missense_Mutation_p.R68W|SULF2_uc010ghv.1_Missense_Mutation_p.R68W	NM_018837	NP_061325	Q8IWU5	SULF2_HUMAN	sulfatase 2 isoform a precursor	68					bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						ATGATGCGCCGGGTCTTGTTC	0.637													25	56					0	0	1	0	0
KCNB1	3745	broad.mit.edu	37	20	47990929	47990929	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr20:47990929C>T	uc002xur.1	-	2	1332	c.1168G>A	c.(1168-1170)GGG>AGG	p.G390R	KCNB1_uc002xus.1_Missense_Mutation_p.G390R	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	390					energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			ACAATTTTCCCCAGGAGAGTC	0.507													7	78					0	0	1	0	0
RBM38	55544	broad.mit.edu	37	20	55982761	55982761	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr20:55982761C>T	uc010zzj.1	+	4	754	c.579C>T	c.(577-579)GCC>GCT	p.A193A	RBM38_uc010zzk.1_3'UTR	NM_017495	NP_059965	Q9H0Z9	RBM38_HUMAN	RNA-binding region containing protein 1 isoform	193					3'-UTR-mediated mRNA stabilization|cell cycle|cell cycle arrest|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mRNA processing|negative regulation of cell proliferation|regulation of RNA splicing|RNA splicing	cytosol|cytosol|nucleus|nucleus	mRNA 3'-UTR binding|mRNA binding|nucleotide binding|RNA binding				0	Lung NSC(12;0.00242)|all_lung(29;0.00767)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;1.55e-12)|Epithelial(14;9.49e-09)|all cancers(14;5.01e-08)			ACCCATACGCCGCCTCGCCTG	0.701													13	29					0	0	1	0	0
SYCP2	10388	broad.mit.edu	37	20	58496393	58496393	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr20:58496393A>G	uc002yaz.2	-	3	279	c.140T>C	c.(139-141)TTC>TCC	p.F47S	SYCP2_uc010gju.1_5'Flank	NM_014258	NP_055073	Q9BX26	SYCP2_HUMAN	synaptonemal complex protein 2	47					cell division|meiotic prophase I|synaptonemal complex assembly		DNA binding			ovary(3)|lung(2)	5	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;1.19e-09)			CACCTTGTGGAAAAACTGTTT	0.303													9	11					0	0	1	0	0
NTSR1	4923	broad.mit.edu	37	20	61391529	61391529	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr20:61391529G>A	uc002ydf.2	+	4	1538	c.1167G>A	c.(1165-1167)AGG>AGA	p.R389R		NM_002531	NP_002522	P30989	NTR1_HUMAN	neurotensin receptor 1	389	Cytoplasmic (Potential).					endoplasmic reticulum|Golgi apparatus|integral to plasma membrane	neurotensin receptor activity, G-protein coupled			skin(2)|lung(1)|central_nervous_system(1)	4	Breast(26;3.65e-08)		BRCA - Breast invasive adenocarcinoma(19;3.63e-06)			GGCGGCGCAGGAGGAAGAGGC	0.642													19	157					0	0	1	0	0
RTEL1	51750	broad.mit.edu	37	20	62292766	62292767	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr20:62292766_62292767CC>TT	uc002yfu.1	+	3	561_562	c.218_219CC>TT	c.(217-219)GCC>GTT	p.A73V	RTEL1_uc011abc.1_RNA|RTEL1_uc002yft.1_Missense_Mutation_p.A73V|RTEL1_uc011abd.1_Missense_Mutation_p.A73V|RTEL1_uc002yfv.2_Missense_Mutation_p.A73V|RTEL1_uc011abe.1_5'UTR|RTEL1_uc002yfw.2_RNA	NM_016434	NP_057518	Q9NZ71	RTEL1_HUMAN	regulator of telomere elongation helicase 1	73	Helicase ATP-binding.				DNA repair|regulation of double-strand break repair via homologous recombination|telomere maintenance	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|iron-sulfur cluster binding|metal ion binding				0	all_cancers(38;6.47e-12)|all_epithelial(29;3.75e-13)		Epithelial(9;1.25e-09)|all cancers(9;5.13e-09)|BRCA - Breast invasive adenocarcinoma(10;7.26e-05)|OV - Ovarian serous cystadenocarcinoma(5;0.00223)|Colorectal(105;0.107)			CGCAAGATTGCCGAGAGGGCGC	0.639													24	52					0	0	1	0	0
OPRL1	4987	broad.mit.edu	37	20	62729389	62729389	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr20:62729389C>T	uc002yic.2	+	4	870	c.468C>T	c.(466-468)ATC>ATT	p.I156I	OPRL1_uc002yid.2_Silent_p.I156I|OPRL1_uc002yif.3_Silent_p.I151I	NM_182647	NP_872588	P41146	OPRX_HUMAN	opiate receptor-like 1	156	Cytoplasmic (Potential).				elevation of cytosolic calcium ion concentration|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception	integral to plasma membrane	protein binding|X-opioid receptor activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;4.74e-11)|all_epithelial(29;1.33e-12)|Lung NSC(23;3.27e-09)|all_lung(23;1.02e-08)					GCCACCCCATCCGTGCCCTCG	0.572													46	94					0	0	1	0	0
DOPEY2	9980	broad.mit.edu	37	21	37602855	37602855	+	Silent	SNP	C	T	T	rs141312847		TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr21:37602855C>T	uc002yvg.2	+	14	1852	c.1773C>T	c.(1771-1773)ATC>ATT	p.I591I	DOPEY2_uc011aeb.1_Silent_p.I591I	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	591					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						ACAGTGGGATCGGGCTCAGTG	0.522													56	94					0	0	1	0	0
ERG	2078	broad.mit.edu	37	21	39755571	39755571	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr21:39755571G>A	uc010gnw.2	-	12	1510	c.1215C>T	c.(1213-1215)GCC>GCT	p.A405A	ERG_uc002yxa.2_Silent_p.A398A|ERG_uc011aek.1_Silent_p.A306A|ERG_uc010gnv.2_Silent_p.A282A|ERG_uc010gnx.2_Silent_p.A381A|ERG_uc011ael.1_Silent_p.A405A|ERG_uc002yxb.2_Silent_p.A381A	NM_001136155	NP_001129627	P11308	ERG_HUMAN	ets-related isoform 4	405					cell proliferation|multicellular organismal development|protein phosphorylation	cytoplasm|nucleus|ribonucleoprotein complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity		TMPRSS2/ERG(2499)|FUS/ERG(163)|EWSR1/ERG(162)	prostate(2499)|bone(167)|haematopoietic_and_lymphoid_tissue(153)|soft_tissue(5)|lung(2)|skin(1)|ovary(1)	2828		Prostate(19;3.6e-06)				GGGGCTGGAGGGCCTGGGCGA	0.582													42	118					0	0	1	0	0
BRWD1	54014	broad.mit.edu	37	21	40604331	40604331	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr21:40604331T>C	uc002yxk.1	-	24	2999	c.2860A>G	c.(2860-2862)AAA>GAA	p.K954E	BRWD1_uc010goc.1_5'UTR|BRWD1_uc002yxl.2_Missense_Mutation_p.K954E|BRWD1_uc010god.1_5'Flank	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	954					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				AAAGGAGATTTTCTAAGTGTG	0.348													30	38					0	0	1	0	0
UMODL1	89766	broad.mit.edu	37	21	43496189	43496189	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr21:43496189T>C	uc002zaf.1	+	2	152	c.152T>C	c.(151-153)GTG>GCG	p.V51A	UMODL1_uc002zad.1_5'UTR|UMODL1_uc002zae.1_5'UTR|UMODL1_uc002zag.1_Missense_Mutation_p.V51A|uc002zah.1_RNA	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	51	Extracellular (Potential).|EMI.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						GTGGAGGCCGTGCAGACGTCC	0.592													53	116					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45860722	45860722	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr21:45860722C>T	uc002zet.1	+	32	4533	c.4320C>T	c.(4318-4320)ATC>ATT	p.I1440I	TRPM2_uc002zeu.1_Silent_p.I1440I|TRPM2_uc002zew.1_Silent_p.I1440I|TRPM2_uc010gpt.1_Silent_p.I1490I|TRPM2_uc002zex.1_Silent_p.I1226I|TRPM2_uc002zey.1_Silent_p.I919I|TRPM2_uc011aff.1_Silent_p.I121I	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	1440	Nudix hydrolase.|Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						ATGCCTGGATCGAGACGGTGG	0.617													43	95					0	0	1	0	0
KRTAP10-3	386682	broad.mit.edu	37	21	45978081	45978081	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr21:45978081G>T	uc002zfj.1	-	1	563	c.518C>A	c.(517-519)CCC>CAC	p.P173H	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198696	NP_941969	P60369	KR103_HUMAN	keratin associated protein 10-3	173	18 X 5 AA repeats of C-C-X(3).			Missing (in Ref. 3; AAI33678).		keratin filament				skin(1)	1						GGAGGGGATGGGCACACAGCA	0.721													17	124					8.00594e-06	8.12853e-06	1	1	0
COL18A1	80781	broad.mit.edu	37	21	46875638	46875638	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr21:46875638C>T	uc011afs.1	+	1	215	c.194C>T	c.(193-195)ACC>ATC	p.T65I	COL18A1_uc002zhg.2_Intron|COL18A1_uc002zhi.2_Missense_Mutation_p.T65I	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	65					cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		ACACACGTGACCCCCCGGAAT	0.637													53	129					0	0	1	0	0
GGT3P	2679	broad.mit.edu	37	22	18778612	18778612	+	RNA	SNP	C	T	T	rs1055042	by1000genomes	TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr22:18778612C>T	uc011ago.1	-	2		c.208G>A			GGT3P_uc011agp.1_RNA|GGT3P_uc002zob.1_RNA					Homo sapiens cDNA clone IMAGE:5761295, **** WARNING: chimeric clone ****.												0						GCGGCCACGGCAGCCCTGGTG	0.597													4	35					0	0	1	0	0
TSSK2	23617	broad.mit.edu	37	22	19118936	19118936	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr22:19118936G>A	uc002zow.2	+	1	616	c.24G>A	c.(22-24)AGG>AGA	p.R8R	DGCR14_uc002zot.2_3'UTR|DGCR14_uc002zou.2_3'UTR|DGCR14_uc002zov.2_RNA	NM_053006	NP_443732	Q96PF2	TSSK2_HUMAN	testis-specific serine kinase 2	8					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)	1	Colorectal(54;0.0993)					CAGTCCTAAGGAAGAAGGGTT	0.542													57	59					0	0	1	0	0
RIMBP3	85376	broad.mit.edu	37	22	20457974	20457974	+	Missense_Mutation	SNP	C	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr22:20457974C>A	uc002zsd.3	-	1	3813	c.3328G>T	c.(3328-3330)GTG>TTG	p.V1110L		NM_015672	NP_056487			RIMS binding protein 3												0	Colorectal(54;0.0993)|Melanoma(16;0.165)		LUSC - Lung squamous cell carcinoma(15;0.0405)|Lung(15;0.224)			TCAATGGTCACAGGGAGCCAG	0.602													6	52					2.5808e-16	2.65471e-16	1	1	0
AIFM3	150209	broad.mit.edu	37	22	21328842	21328842	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr22:21328842T>C	uc002ztj.2	+	7	757	c.539T>C	c.(538-540)GTG>GCG	p.V180A	AIFM3_uc002ztk.2_Missense_Mutation_p.V180A|AIFM3_uc002ztl.2_Missense_Mutation_p.V186A|AIFM3_uc011ahx.1_Missense_Mutation_p.V168A|AIFM3_uc002ztm.1_5'UTR	NM_144704	NP_653305	Q96NN9	AIFM3_HUMAN	apoptosis-inducing factor,	180					activation of caspase activity by cytochrome c|cell redox homeostasis|electron transport chain|induction of apoptosis|mitochondrial depolarization|transport	endoplasmic reticulum|mitochondrial inner membrane	2 iron, 2 sulfur cluster binding|caspase activator activity|flavin adenine dinucleotide binding|metal ion binding|oxidoreductase activity|protein binding			ovary(2)|lung(2)	4	all_cancers(11;3.71e-26)|all_epithelial(7;1.59e-23)|Lung NSC(8;3.06e-15)|all_lung(8;5.05e-14)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0367)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)			AGGACCAAGGTGATGGCCAAG	0.607													4	47					0	0	1	0	0
HIC2	23119	broad.mit.edu	37	22	21800972	21800972	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr22:21800972C>T	uc002zur.3	+	3	2018	c.1788C>T	c.(1786-1788)GGC>GGT	p.G596G	HIC2_uc002zus.3_Silent_p.G596G	NM_015094	NP_055909	Q96JB3	HIC2_HUMAN	hypermethylated in cancer 2	596	C2H2-type 5.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	focal adhesion|nucleus	DNA binding|protein C-terminus binding|zinc ion binding			skin(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00438)|Colorectal(54;0.0968)	Lung SC(17;0.0262)|all_lung(157;0.205)				TGTGCGGGGGCAAGTTCACCC	0.647													9	126					0	0	1	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659578	24659578	+	RNA	SNP	A	G	G			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr22:24659578A>G	uc002zzs.3	+	7		c.3310A>G			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						TGCGCAGGCCAACACTCACTG	0.617													4	17					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26346369	26346369	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr22:26346369C>T	uc003abz.1	+	37	6035	c.5785C>T	c.(5785-5787)CTG>TTG	p.L1929L	MYO18B_uc003aca.1_Silent_p.L1810L|MYO18B_uc010guy.1_Silent_p.L1811L|MYO18B_uc010guz.1_Silent_p.L1809L|MYO18B_uc011aka.1_Silent_p.L1083L|MYO18B_uc011akb.1_Silent_p.L1442L	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1929	Tail.|Potential.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						AGAACTGCAGCTGCAGCTGGA	0.403													5	7					0	0	1	0	0
C22orf30	253143	broad.mit.edu	37	22	32097668	32097668	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr22:32097668G>A	uc003alp.3	-	7	6274	c.6081C>T	c.(6079-6081)ACC>ACT	p.T2027T	C22orf30_uc003alo.1_Silent_p.T1826T|C22orf30_uc010gwj.1_Intron	NM_173566	NP_775837	Q5THK1	PR14L_HUMAN	hypothetical protein LOC253143	2027											0						GGCCCATGGGGGTAAGATTAG	0.373													27	17					0	0	1	0	0
TCF20	6942	broad.mit.edu	37	22	42605941	42605941	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr22:42605941G>A	uc003bcj.1	-	1	5505	c.5371C>T	c.(5371-5373)CGC>TGC	p.R1791C	TCF20_uc003bck.1_Missense_Mutation_p.R1791C|TCF20_uc003bnt.2_Missense_Mutation_p.R1791C	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	1791	Nuclear localization signal (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						TCTTCCGAGCGGTGGCGCCGC	0.597													48	254					0	0	1	0	0
SCUBE1	80274	broad.mit.edu	37	22	43616546	43616546	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr22:43616546T>A	uc003bdt.1	-	14	1685	c.1597A>T	c.(1597-1599)AAG>TAG	p.K533*		NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	533					adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				CGGCGCCTCTTCTTGGAGGAG	0.582													20	182					0	0	1	0	0
TTLL8	164714	broad.mit.edu	37	22	50485644	50485644	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr22:50485644C>T	uc011ark.1	-	4	346	c.346G>A	c.(346-348)GAC>AAC	p.D116N		NM_001080447	NP_001073916			tubulin tyrosine ligase-like family, member 8											ovary(2)	2		all_cancers(38;3.44e-07)|all_epithelial(38;2.44e-06)|all_lung(38;0.00141)|Breast(42;0.00519)|Lung NSC(38;0.0199)|Ovarian(80;0.142)|Lung SC(80;0.162)		READ - Rectum adenocarcinoma(2;0.000882)|Colorectal(2;0.00311)|BRCA - Breast invasive adenocarcinoma(115;0.226)		AGCATCTGGTCGTAGGTCAGG	0.552													10	36					0	0	1	0	0
CHL1	10752	broad.mit.edu	37	3	361463	361463	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:361463G>A	uc003bou.2	+	3	275	c.4G>A	c.(4-6)GAG>AAG	p.E2K	CHL1_uc003bot.2_Missense_Mutation_p.E2K|CHL1_uc003bow.1_Missense_Mutation_p.E2K|CHL1_uc011asi.1_Missense_Mutation_p.E2K	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	2					axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		AAGAGCAATGGAGCCGCTTTT	0.373													8	27					0	0	1	0	0
GRM7	2917	broad.mit.edu	37	3	7494303	7494303	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:7494303G>A	uc003bqm.2	+	6	1458	c.1184G>A	c.(1183-1185)AGA>AAA	p.R395K	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.R395K|GRM7_uc003bql.2_Missense_Mutation_p.R395K|GRM7_uc003bqn.1_5'UTR|GRM7_uc010hch.1_5'UTR	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	395	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	GGACAGGAGAGAATTGGAAAA	0.348													23	37					0	0	1	0	0
GRM7	2917	broad.mit.edu	37	3	7494344	7494344	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:7494344C>T	uc003bqm.2	+	6	1499	c.1225C>T	c.(1225-1227)CAG>TAG	p.Q409*	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Nonsense_Mutation_p.Q409*|GRM7_uc003bql.2_Nonsense_Mutation_p.Q409*|GRM7_uc003bqn.1_5'UTR|GRM7_uc010hch.1_5'UTR	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	409	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	GGGTAAAGTCCAGTTCGTGAT	0.413													24	38					0	0	1	0	0
SETD5	55209	broad.mit.edu	37	3	9516192	9516192	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:9516192G>A	uc003brt.2	+	21	3992	c.3557G>A	c.(3556-3558)CGA>CAA	p.R1186Q	SETD5_uc003bru.2_Missense_Mutation_p.R1088Q|SETD5_uc003brv.2_Missense_Mutation_p.R1075Q|SETD5_uc010hck.2_Missense_Mutation_p.R668Q|SETD5_uc003brx.2_Missense_Mutation_p.R855Q	NM_001080517	NP_001073986	Q9C0A6	SETD5_HUMAN	SET domain containing 5	1186	Ser-rich.									ovary(2)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.112)		AAGGTCCTCCGAAGCAGCGTG	0.562													37	90					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10370631	10370631	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:10370631G>A	uc003bvt.2	-	23	4038	c.3599C>T	c.(3598-3600)TCG>TTG	p.S1200L	ATP2B2_uc003bvv.2_Missense_Mutation_p.S1155L|ATP2B2_uc003bvw.2_Missense_Mutation_p.S1155L|ATP2B2_uc003bvs.2_RNA|ATP2B2_uc010hdo.2_Missense_Mutation_p.S905L|hsa-mir-378b|MI0014154_5'Flank	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	1200	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CGGCGGGCTCGAGTTCTGCTT	0.552													22	57					0	0	1	0	0
C3orf19	51244	broad.mit.edu	37	3	14712409	14712409	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:14712409C>T	uc003byw.2	+	11	1203	c.1112C>T	c.(1111-1113)TCC>TTC	p.S371F	C3orf19_uc010hej.2_Missense_Mutation_p.S200F	NM_016474	NP_057558	Q6PII3	CC019_HUMAN	hypothetical protein LOC51244	371											0						CCAGAATTTTCCTTTGGATAC	0.368													7	49					0	0	1	0	0
KAT2B	8850	broad.mit.edu	37	3	20153262	20153262	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:20153262C>T	uc003cbq.2	+	6	1472	c.1026C>T	c.(1024-1026)ATC>ATT	p.I342I		NM_003884	NP_003875	Q92831	KAT2B_HUMAN	K(lysine) acetyltransferase 2B	342					cell cycle arrest|cellular response to insulin stimulus|chromatin remodeling|histone H3 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|negative regulation of cell proliferation|transcription initiation from RNA polymerase I promoter	Ada2/Gcn5/Ada3 transcription activator complex|chromatin remodeling complex|PCAF complex	cyclin-dependent protein kinase inhibitor activity|histone acetyltransferase activity|histone deacetylase binding|protein kinase binding|transcription coactivator activity|transcription factor binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GAACTCTAATCCTCACTCATT	0.423													12	36					0	0	1	0	0
THRB	7068	broad.mit.edu	37	3	24169111	24169111	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:24169111C>T	uc003ccx.3	-	10	1372	c.1023G>A	c.(1021-1023)CTG>CTA	p.L341L	THRB_uc010hfe.2_Silent_p.L341L|THRB_uc003ccy.3_Silent_p.L341L|THRB_uc003ccz.3_Silent_p.L336L	NM_001128176	NP_001121648	P10828	THB_HUMAN	thyroid hormone receptor, beta	341	Ligand-binding.|Interaction with NR2F6.		L -> P (in GTHR).		regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription corepressor activity|zinc ion binding			skin(2)|pancreas(1)	3					Levothyroxine(DB00451)|Liothyronine(DB00279)	CCCCATTTTTCAGCTGGCCCC	0.537													19	166					0	0	1	0	0
THRB	7068	broad.mit.edu	37	3	24231643	24231643	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:24231643G>A	uc003ccx.3	-	5	554	c.205C>T	c.(205-207)CAT>TAT	p.H69Y	THRB_uc010hfe.2_Missense_Mutation_p.H69Y|THRB_uc003ccy.3_Missense_Mutation_p.H69Y|THRB_uc003ccz.3_Missense_Mutation_p.H64Y|THRB_uc003cdc.2_Missense_Mutation_p.H64Y|THRB_uc003cdd.2_Missense_Mutation_p.H64Y|THRB_uc003cde.1_Missense_Mutation_p.H64Y	NM_001128176	NP_001121648	P10828	THB_HUMAN	thyroid hormone receptor, beta	69	Modulating.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription corepressor activity|zinc ion binding			skin(2)|pancreas(1)	3					Levothyroxine(DB00451)|Liothyronine(DB00279)	TGGTCCAGATGGAATATTGAG	0.473													25	95					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38647610	38647610	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:38647610C>T	uc003cio.2	-	10	1364	c.1170G>A	c.(1168-1170)ATG>ATA	p.M390I	SCN5A_uc003cin.2_Missense_Mutation_p.M390I|SCN5A_uc003cil.3_Missense_Mutation_p.M390I|SCN5A_uc010hhi.2_Missense_Mutation_p.M390I|SCN5A_uc010hhk.2_Missense_Mutation_p.M390I|SCN5A_uc011ayr.1_Missense_Mutation_p.M390I|SCN5A_uc010hhj.1_Missense_Mutation_p.M1I	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	390	Helical; Name=S6 of repeat I; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TGAAGAAGATCATGTAGATCT	0.567													19	43					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38651317	38651317	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:38651317A>G	uc003cio.2	-	7	1036	c.842T>C	c.(841-843)GTG>GCG	p.V281A	SCN5A_uc003cin.2_Missense_Mutation_p.V281A|SCN5A_uc003cil.3_Missense_Mutation_p.V281A|SCN5A_uc010hhi.2_Missense_Mutation_p.V281A|SCN5A_uc010hhk.2_Missense_Mutation_p.V281A|SCN5A_uc011ayr.1_Missense_Mutation_p.V281A|SCN5A_uc010hhl.1_Missense_Mutation_p.V104A	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	281					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GAAGTTGCGCACGCACTTGTG	0.587													21	79					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38755538	38755538	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:38755538C>T	uc003ciq.2	-	21	3715	c.3715G>A	c.(3715-3717)GAA>AAA	p.E1239K		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1239	III.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TCAGAATATTCCAGAATCTTC	0.522													24	95					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38812783	38812783	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:38812783C>T	uc003ciq.2	-	4	586	c.586G>A	c.(586-588)GTC>ATC	p.V196I		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	196	I.|Helical; Name=S3 of repeat I; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	AGGGTAATGACGCTAAAATCC	0.353													18	98					0	0	1	0	0
CCR8	1237	broad.mit.edu	37	3	39374683	39374683	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:39374683C>T	uc010hhr.2	+	2	999	c.861C>T	c.(859-861)ATC>ATT	p.I287I	CCR8_uc003cjm.2_Silent_p.I204I	NM_005201	NP_005192	P51685	CCR8_HUMAN	chemokine (C-C motif) receptor 8	287	Helical; Name=7; (Potential).				cell adhesion|chemotaxis|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane	coreceptor activity			ovary(1)|lung(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0504)|Kidney(284;0.0635)		TCACAGAAATCATTTCCTTTA	0.428													11	47					0	0	1	0	0
ZNF35	7584	broad.mit.edu	37	3	44700594	44700594	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:44700594G>A	uc003cnq.2	+	4	960	c.739G>A	c.(739-741)GAG>AAG	p.E247K	ZNF35_uc003cnr.2_Missense_Mutation_p.E87K	NM_003420	NP_003411	P13682	ZNF35_HUMAN	zinc finger protein 35	247					cellular response to retinoic acid|spermatogenesis	nucleus|perinuclear region of cytoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(412;0.0228)		OV - Ovarian serous cystadenocarcinoma(275;2.49e-27)|KIRC - Kidney renal clear cell carcinoma(197;0.0475)|Kidney(197;0.0595)		CCACACTGGAGAGAAACCCTT	0.463													29	78					0	0	1	0	0
LTF	4057	broad.mit.edu	37	3	46486834	46486834	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:46486834C>T	uc003cpq.2	-	12	1489	c.1451G>A	c.(1450-1452)AGG>AAG	p.R484K	LTF_uc003fzr.2_Missense_Mutation_p.R440K|LTF_uc010hjh.2_Missense_Mutation_p.R482K|LTF_uc003cpr.2_Missense_Mutation_p.R471K	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	484	Transferrin-like 2.	Carbonate 2.			cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	GCCTGCAGTCCTGTCCACGGC	0.567													25	65					0	0	1	0	0
PTH1R	5745	broad.mit.edu	37	3	46944857	46944857	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:46944857C>T	uc003cqm.2	+	16	1696	c.1493C>T	c.(1492-1494)CCC>CTC	p.P498L	PTH1R_uc003cqn.2_Missense_Mutation_p.P498L	NM_000316	NP_000307	Q03431	PTH1R_HUMAN	parathyroid hormone receptor 1 precursor	498	Cytoplasmic (Potential).					cytoplasm|integral to plasma membrane|nucleus	parathyroid hormone receptor activity|peptide hormone binding|protein self-association			breast(1)	1						AGCTACGGCCCCATGGTGTCC	0.622									Ollier_disease_/_Maffuci_syndrome				10	34					0	0	1	0	0
FBXW12	285231	broad.mit.edu	37	3	48421035	48421035	+	Missense_Mutation	SNP	G	A	A	rs137962592		TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:48421035G>A	uc003csr.2	+	7	947	c.761G>A	c.(760-762)CGT>CAT	p.R254H	FBXW12_uc010hjv.2_Missense_Mutation_p.R235H|FBXW12_uc003css.2_Missense_Mutation_p.R184H|FBXW12_uc010hjw.2_Missense_Mutation_p.R153H	NM_207102	NP_996985	Q6X9E4	FBW12_HUMAN	F-box and WD repeat domain containing 12 isoform	254											0				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		ACATACAGTCGTACCTTGCCA	0.418													15	173					0	0	1	0	0
PLXNB1	5364	broad.mit.edu	37	3	48456735	48456735	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:48456735G>A	uc003csw.2	-	20	4086	c.3816C>T	c.(3814-3816)GTC>GTT	p.V1272V	PLXNB1_uc003cst.2_5'Flank|PLXNB1_uc003csu.2_Silent_p.V1089V|PLXNB1_uc003csx.2_Silent_p.V1272V|PLXNB1_uc010hjx.1_RNA|PLXNB1_uc003csy.1_5'UTR	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	1272	Extracellular (Potential).|IPT/TIG 3.				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TCTGGCCACGGACGCATATCT	0.587													13	27					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49692070	49692070	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:49692070G>A	uc003cxe.3	+	5	5195	c.5081G>A	c.(5080-5082)AGG>AAG	p.R1694K		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	1694					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GTGGAAGCGAGGAAGTATGGT	0.582													37	86					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49701251	49701251	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:49701251G>A	uc003cxe.3	+	8	11654	c.11540G>A	c.(11539-11541)GGG>GAG	p.G3847E		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	3847					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GGCTCTAAAGGGACAGCCAAA	0.582													31	63					0	0	1	0	0
RNF123	63891	broad.mit.edu	37	3	49735512	49735512	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:49735512C>T	uc003cxh.2	+	7	511	c.425C>T	c.(424-426)TCC>TTC	p.S142F	RNF123_uc010hky.1_5'Flank|RNF123_uc003cxi.2_5'Flank	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	142	B30.2/SPRY.					cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		GTCCTCATCTCCTCCCAGGGG	0.607													18	45					0	0	1	0	0
SEMA3F	6405	broad.mit.edu	37	3	50224047	50224047	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:50224047C>T	uc003cyj.2	+	18	2013	c.1815C>T	c.(1813-1815)GCC>GCT	p.A605A	SEMA3F_uc003cyk.2_Silent_p.A574A	NM_004186	NP_004177	Q13275	SEM3F_HUMAN	semaphorin 3F precursor	605	Ig-like C2-type.				axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			lung(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		ACTCTAAAGCCAACAAGAATG	0.617													21	52					0	0	1	0	0
IL17RD	54756	broad.mit.edu	37	3	57143616	57143616	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:57143616G>A	uc003dil.2	-	5	588	c.499C>T	c.(499-501)CCT>TCT	p.P167S	IL17RD_uc003dik.2_Missense_Mutation_p.P143S|IL17RD_uc010hna.2_Missense_Mutation_p.P23S|IL17RD_uc011bex.1_Missense_Mutation_p.P23S	NM_017563	NP_060033	Q8NFM7	I17RD_HUMAN	interleukin 17 receptor D precursor	167	Extracellular (Potential).					Golgi membrane|integral to membrane|plasma membrane	receptor activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0173)|Kidney(284;0.0204)		TTAATGGAAGGAAAAGGGACA	0.408													21	61					0	0	1	0	0
ASB14	142686	broad.mit.edu	37	3	57310699	57310699	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:57310699C>T	uc003diq.2	-	10	1739	c.1151G>A	c.(1150-1152)CGG>CAG	p.R384Q	ASB14_uc003dip.1_Missense_Mutation_p.R263Q	NM_001142733	NP_001136205	A6NK59	ASB14_HUMAN	ankyrin repeat and SOCS box-containing 14	548	SOCS box.				intracellular signal transduction						0				KIRC - Kidney renal clear cell carcinoma(284;0.011)|Kidney(284;0.0127)		CAAATGTAACCGTCCCATGCA	0.408													18	43					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58084492	58084492	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:58084492C>T	uc003djj.2	+	8	1367	c.1202C>T	c.(1201-1203)ACC>ATC	p.T401I	FLNB_uc010hne.2_Missense_Mutation_p.T401I|FLNB_uc003djk.2_Missense_Mutation_p.T401I|FLNB_uc010hnf.2_Missense_Mutation_p.T401I|FLNB_uc003djl.2_Missense_Mutation_p.T232I|FLNB_uc003djm.2_Missense_Mutation_p.T232I	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	401	Filamin 2.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		GGGAAGAACACCGTGGAGTTG	0.532													30	73					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58131696	58131696	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:58131696C>T	uc003djj.2	+	33	5639	c.5474C>T	c.(5473-5475)TCT>TTT	p.S1825F	FLNB_uc010hne.2_Missense_Mutation_p.S1856F|FLNB_uc003djk.2_Missense_Mutation_p.S1814F|FLNB_uc010hnf.2_Missense_Mutation_p.S1801F|FLNB_uc003djl.2_Missense_Mutation_p.S1645F|FLNB_uc003djm.2_Missense_Mutation_p.S1632F	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1825	Filamin 17.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		GGAAGTGTTTCTGCATACGGT	0.502													52	96					0	0	1	0	0
DNASE1L3	1776	broad.mit.edu	37	3	58196588	58196588	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:58196588G>A	uc003djo.1	-	1	143	c.46C>T	c.(46-48)CAC>TAC	p.H16Y	DNASE1L3_uc011bfd.1_Missense_Mutation_p.H16Y|DNASE1L3_uc003djp.1_Missense_Mutation_p.H16Y|DNASE1L3_uc003djq.1_Missense_Mutation_p.H16Y	NM_004944	NP_004935	Q13609	DNSL3_HUMAN	deoxyribonuclease I-like 3 precursor	16					apoptosis|DNA catabolic process	nucleus	calcium ion binding|DNA binding|endodeoxyribonuclease activity, producing 5'-phosphomonoesters			breast(2)|large_intestine(1)	3				BRCA - Breast invasive adenocarcinoma(55;0.00021)|KIRC - Kidney renal clear cell carcinoma(284;0.0445)|Kidney(284;0.0556)|OV - Ovarian serous cystadenocarcinoma(275;0.202)		AGGGCGCTGTGGATGGAGAGG	0.567													43	77					0	0	1	0	0
PRICKLE2	166336	broad.mit.edu	37	3	64133246	64133246	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:64133246G>A	uc003dmf.2	-	7	1506	c.920C>T	c.(919-921)TCA>TTA	p.S307L		NM_198859	NP_942559	Q7Z3G6	PRIC2_HUMAN	prickle-like 2	307	LIM zinc-binding 3.					cytoplasm|nuclear membrane	zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(201;0.136)		BRCA - Breast invasive adenocarcinoma(55;0.000971)|KIRC - Kidney renal clear cell carcinoma(15;0.00443)|Kidney(15;0.00497)		GCAGGCCCGTGAGCAGAATAT	0.592													33	110					0	0	1	0	0
CADM2	253559	broad.mit.edu	37	3	86010709	86010709	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:86010709C>T	uc003dqj.2	+	7	1481	c.855C>T	c.(853-855)TTC>TTT	p.F285F	CADM2_uc003dqk.2_Silent_p.F294F|CADM2_uc003dql.2_Silent_p.F287F	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	285	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		ACATTCTTTTCCTGAACAAAA	0.433													17	92					0	0	1	0	0
VGLL3	389136	broad.mit.edu	37	3	86996214	86996214	+	Missense_Mutation	SNP	A	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:86996214A>C	uc003dqn.2	-	4	1305	c.941T>G	c.(940-942)CTA>CGA	p.L314R		NM_016206	NP_057290	A8MV65	VGLL3_HUMAN	colon carcinoma related protein	314					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	all_cancers(8;0.109)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00241)|Lung(72;0.00712)		TTGATGCTGTAGACCTGGAAC	0.363													7	70					0	0	1	0	0
OR5K3	403277	broad.mit.edu	37	3	98110389	98110389	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:98110389G>A	uc011bgw.1	+	1	880	c.880G>A	c.(880-882)GAA>AAA	p.E294K		NM_001005516	NP_001005516	A6NET4	OR5K3_HUMAN	olfactory receptor, family 5, subfamily K,	294	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AAGAAATAAGGAAGTAATAAA	0.264													19	45					0	0	1	0	0
CD96	10225	broad.mit.edu	37	3	111263892	111263893	+	Splice_Site	DNP	GG	AA	AA			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:111263892_111263893GG>AA	uc003dxw.2	+	2	232	c.62_splice	c.e2-1	p.G21_splice	CD96_uc003dxv.2_Splice_Site_p.G21_splice|CD96_uc003dxx.2_Splice_Site_p.G21_splice|CD96_uc010hpy.1_Splice_Site_p.G21_splice	NM_198196	NP_937839	P40200	TACT_HUMAN	CD96 antigen isoform 1 precursor						cell adhesion|immune response|regulation of immune response	integral to plasma membrane				skin(2)|central_nervous_system(1)	3						TTTCTTTTCAGGAGTTTGGGAA	0.406									Opitz_Trigonocephaly_syndrome				36	102					0	0	1	0	0
CCDC52	152185	broad.mit.edu	37	3	113169284	113169284	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:113169284G>A	uc003eag.3	-	15	2513	c.2222C>T	c.(2221-2223)GCT>GTT	p.A741V	CCDC52_uc003eaf.3_RNA|CCDC52_uc003eah.1_Missense_Mutation_p.A637V	NM_144718	NP_653319	Q8N0Z3	SPICE_HUMAN	coiled-coil domain containing 52	741	Potential.				cell division|mitosis	centriole|spindle	protein binding				0						TTTTCCACGAGCCTCCATACT	0.423													40	55					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	121980842	121980842	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:121980842C>T	uc003eev.3	+	4	1332	c.960C>T	c.(958-960)TTC>TTT	p.F320F	CASR_uc003eew.3_Silent_p.F320F	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	320	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CCATTGGATTCGCTCTGAAGG	0.577													20	50					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	122002676	122002676	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:122002676C>T	uc003eev.3	+	7	2247	c.1875C>T	c.(1873-1875)TTC>TTT	p.F625F	CASR_uc003eew.3_Silent_p.F635F	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	625	Helical; Name=1; (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TGGGCATTTTCCTGACAGCCT	0.552													11	77					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	122002902	122002902	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:122002902C>T	uc003eev.3	+	7	2473	c.2101C>T	c.(2101-2103)CGT>TGT	p.R701C	CASR_uc003eew.3_Missense_Mutation_p.R711C	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	701	Cytoplasmic (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GAAAACCAACCGTGTCCTCCT	0.602													32	61					0	0	1	0	0
ADCY5	111	broad.mit.edu	37	3	123051503	123051503	+	Nonsense_Mutation	SNP	C	A	A	rs79462429	by1000genomes	TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:123051503C>A	uc003egh.1	-	4	1426	c.1426G>T	c.(1426-1428)GAG>TAG	p.E476*	ADCY5_uc003egg.1_Nonsense_Mutation_p.E109*|ADCY5_uc003egi.1_Nonsense_Mutation_p.E35*	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	476	Guanylate cyclase 1.|Cytoplasmic (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		GTGAAGCCCTCGATGTCAGCA	0.448													9	22					7.48243e-07	7.60596e-07	1	1	0
MYLK	4638	broad.mit.edu	37	3	123471262	123471262	+	Missense_Mutation	SNP	G	A	A	rs111422191		TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:123471262G>A	uc003ego.2	-	5	571	c.289C>T	c.(289-291)CAT>TAT	p.H97Y	MYLK_uc011bjw.1_Missense_Mutation_p.H97Y|MYLK_uc003egp.2_Missense_Mutation_p.H97Y|MYLK_uc003egq.2_Missense_Mutation_p.H97Y|MYLK_uc003egr.2_Missense_Mutation_p.H97Y|MYLK_uc003egs.2_Intron|MYLK_uc010hrs.1_Missense_Mutation_p.H97Y|MYLK_uc003egu.1_Missense_Mutation_p.H107Y	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	97	Ig-like C2-type 1.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		TCCTCCTCATGGACAGCATGA	0.587													38	66					0	0	1	0	0
ITGB5	3693	broad.mit.edu	37	3	124578242	124578242	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:124578242G>A	uc003eho.2	-	3	505	c.208C>T	c.(208-210)CTT>TTT	p.L70F		NM_002213	NP_002204	P18084	ITB5_HUMAN	integrin, beta 5 precursor	70	Extracellular (Potential).|PSI.				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|muscle contraction	integrin complex	receptor activity			skin(2)	2				GBM - Glioblastoma multiforme(114;0.163)		TTTTTGACAAGGTTTGCCCTC	0.587													19	71					0	0	1	0	0
COL6A6	131873	broad.mit.edu	37	3	130318625	130318625	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:130318625C>T	uc010htl.2	+	19	4655	c.4624C>T	c.(4624-4626)CCC>TCC	p.P1542S	COL6A6_uc003eni.3_5'UTR	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1542	Triple-helical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GCCAGGCCCCCCCGGGACACC	0.493													14	39					0	0	1	0	0
BFSP2	8419	broad.mit.edu	37	3	133119089	133119089	+	Silent	SNP	C	T	T	rs112142146	byFrequency	TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:133119089C>T	uc003epn.1	+	1	300	c.162C>T	c.(160-162)CCC>CCT	p.P54P		NM_003571	NP_003562	Q13515	BFSP2_HUMAN	phakinin	54	Head.				response to stimulus|visual perception	cytoplasm|intermediate filament|membrane	structural constituent of cytoskeleton|structural constituent of eye lens				0						TCCGAGCACCCGGGGTCTATG	0.662													16	62					0	0	1	0	0
PIK3CB	5291	broad.mit.edu	37	3	138426007	138426007	+	Silent	SNP	G	A	A	rs61755418		TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:138426007G>A	uc011bmq.1	-	9	1524	c.1524C>T	c.(1522-1524)TTC>TTT	p.F508F	PIK3CB_uc011bmn.1_Silent_p.F37F|PIK3CB_uc011bmo.1_Intron|PIK3CB_uc011bmp.1_Silent_p.F112F	NM_006219	NP_006210	P42338	PK3CB_HUMAN	catalytic phosphatidylinositol 3-kinase beta	508					activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						TTACCTTATCGAAGGGAGGGT	0.328													18	50					0	0	1	0	0
CLSTN2	64084	broad.mit.edu	37	3	140265424	140265424	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:140265424C>T	uc003etn.2	+	10	1765	c.1575C>T	c.(1573-1575)CGC>CGT	p.R525R	CLSTN2_uc003etm.2_Silent_p.R525R	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	525	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						TCACCATCCGCCCTGGCAAAA	0.502										HNSCC(16;0.037)			17	35					0	0	1	0	0
FAM194A	131831	broad.mit.edu	37	3	150398676	150398676	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:150398676G>A	uc003eyg.2	-	8	981	c.924C>T	c.(922-924)ATC>ATT	p.I308I	FAM194A_uc003eyh.2_Silent_p.I162I	NM_152394	NP_689607	Q7L0X2	F194A_HUMAN	hypothetical protein LOC131831	308										skin(2)|ovary(1)	3						GCTCCTCATAGATATAGTCAA	0.428													25	50					0	0	1	0	0
GPR149	344758	broad.mit.edu	37	3	154145317	154145317	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:154145317C>T	uc003faa.2	-	2	1262	c.1162G>A	c.(1162-1164)GAT>AAT	p.D388N		NM_001038705	NP_001033794	Q86SP6	GP149_HUMAN	G protein-coupled receptor 149	388	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(6)	6			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			TTTTTCCCATCGGACGCCACT	0.483													18	47					0	0	1	0	0
RSRC1	51319	broad.mit.edu	37	3	157920882	157920882	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:157920882C>T	uc003fbt.2	+	4	453	c.342C>T	c.(340-342)CTC>CTT	p.L114L	RSRC1_uc011bou.1_Intron|RSRC1_uc003fbu.1_Silent_p.L114L|RSRC1_uc003fbv.2_Intron	NM_016625	NP_057709	Q96IZ7	RSRC1_HUMAN	arginine/serine-rich coiled-coil 1	114	Arg/Ser-rich.				nucleocytoplasmic transport	cytoplasm|nuclear speck	protein binding				0			Lung(72;0.00416)|LUSC - Lung squamous cell carcinoma(72;0.00575)			GACCTCGTCTCCGTTCTCATA	0.388													3	28					0	0	1	0	0
SMC4	10051	broad.mit.edu	37	3	160138668	160138668	+	Silent	SNP	A	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:160138668A>C	uc003fdh.2	+	13	2111	c.1998A>C	c.(1996-1998)GCA>GCC	p.A666A	IFT80_uc003fda.2_Intron|SMC4_uc010hwc.1_Silent_p.A430A|SMC4_uc003fdi.2_Silent_p.A641A|SMC4_uc003fdj.2_Silent_p.A666A|SMC4_uc010hwd.2_Silent_p.A666A|SMC4_uc003fdl.2_Silent_p.A369A	NM_001002800	NP_001002800	Q9NTJ3	SMC4_HUMAN	SMC4 structural maintenance of chromosomes	666	Flexible hinge.				cell division|mitotic chromosome condensation	condensin complex|cytoplasm|nucleus	ATP binding|protein heterodimerization activity			ovary(1)|breast(1)	2			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			TTGGAGTTGCAACCTTTATAG	0.264													19	24					0	0	1	0	0
C3orf59	151963	broad.mit.edu	37	3	192516850	192516850	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:192516850G>A	uc011bsp.1	-	2	1122	c.801C>T	c.(799-801)GTC>GTT	p.V267V		NM_178496	NP_848591	Q8IYB1	M21D2_HUMAN	hypothetical protein LOC151963	267											0	all_cancers(143;1.56e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.8e-18)|LUSC - Lung squamous cell carcinoma(58;8.04e-06)|Lung(62;8.62e-06)	GBM - Glioblastoma multiforme(46;3.86e-05)		ACCCACTGATGACCTCTTCCT	0.507													14	31					0	0	1	0	0
ATP13A4	84239	broad.mit.edu	37	3	193175241	193175241	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:193175241G>T	uc003ftd.2	-	15	1796	c.1688C>A	c.(1687-1689)TCT>TAT	p.S563Y	ATP13A4_uc003fte.1_Missense_Mutation_p.S563Y|ATP13A4_uc011bsr.1_Missense_Mutation_p.S34Y|ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	563	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		ATCGTCCCCAGAAAAAGCCAT	0.473													40	71					1.49673e-21	1.54698e-21	1	1	0
CPN2	1370	broad.mit.edu	37	3	194062001	194062001	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr3:194062001G>A	uc003fts.2	-	2	1521	c.1431C>T	c.(1429-1431)GCC>GCT	p.A477A		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	477					protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		ACTGGCTCCGGGCTGCCCTTT	0.667													19	73					0	0	1	0	0
NAT8L	339983	broad.mit.edu	37	4	2065774	2065774	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:2065774G>A	uc003geq.1	+	3	481	c.325G>A	c.(325-327)GGC>AGC	p.G109S		NM_178557	NP_848652	Q8N9F0	NAT8L_HUMAN	N-acetyltransferase 8-like (GCN5-related,	277	N-acetyltransferase.					integral to membrane|microsome|mitochondrial membrane|rough endoplasmic reticulum membrane	aspartate N-acetyltransferase activity				0			OV - Ovarian serous cystadenocarcinoma(23;0.0315)			CGTGCTGCCGGGCATGACCCT	0.632													7	15					0	0	1	0	0
TNIP2	79155	broad.mit.edu	37	4	2744117	2744117	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:2744117G>A	uc003gfg.2	-	6	1244	c.1157C>T	c.(1156-1158)CCC>CTC	p.P386L	TNIP2_uc003gff.2_Missense_Mutation_p.P279L|TNIP2_uc003gfh.2_Missense_Mutation_p.P303L	NM_024309	NP_077285	Q8NFZ5	TNIP2_HUMAN	A20-binding inhibitor of NF-kappaB activation 2	386						cytosol	protein binding			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		CTCTGCAGGGGGTTCTGGCTG	0.647													7	15					0	0	1	0	0
KIAA0232	9778	broad.mit.edu	37	4	6860208	6860208	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:6860208C>T	uc003gjr.3	+	6	956	c.493C>T	c.(493-495)CCT>TCT	p.P165S	KIAA0232_uc003gjq.3_Missense_Mutation_p.P165S	NM_014743	NP_055558	Q92628	K0232_HUMAN	hypothetical protein LOC9778	165							ATP binding			ovary(2)	2						AGAATTATCCCCTCCAGCAAA	0.353													6	34					0	0	1	0	0
BOD1L	259282	broad.mit.edu	37	4	13602715	13602715	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:13602715T>A	uc003gmz.1	-	10	5926	c.5809A>T	c.(5809-5811)ACA>TCA	p.T1937S	BOD1L_uc010idr.1_Missense_Mutation_p.T1274S	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	1937							DNA binding			ovary(5)|breast(1)	6						CCTTTCTCTGTGCCACTCATG	0.468													18	57					0	0	1	0	0
LGI2	55203	broad.mit.edu	37	4	25028503	25028503	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:25028503G>A	uc003grf.2	-	3	427	c.328C>T	c.(328-330)CAT>TAT	p.H110Y		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	110	LRR 2.					extracellular region					0		Breast(46;0.173)				TATTCAAGATGAAAAAGTCCA	0.388													20	60					0	0	1	0	0
RHOH	399	broad.mit.edu	37	4	40245390	40245390	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:40245390C>T	uc003guz.2	+	3	1108	c.384C>T	c.(382-384)GCC>GCT	p.A128A		NM_004310	NP_004301	Q15669	RHOH_HUMAN	ras homolog gene family, member H precursor	128					negative regulation of I-kappaB kinase/NF-kappaB cascade|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|T cell differentiation	cytosol|mitochondrion|plasma membrane	GTP binding|GTPase inhibitor activity|kinase inhibitor activity|Rho GTPase binding			ovary(1)|lung(1)	2						CCCACAGGGCCTCCTGCGTCA	0.592													20	47					0	0	1	0	0
RBM47	54502	broad.mit.edu	37	4	40440109	40440109	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:40440109G>T	uc003gvc.2	-	4	1512	c.802C>A	c.(802-804)CAG>AAG	p.Q268K	RBM47_uc003gvd.2_Missense_Mutation_p.Q268K|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Missense_Mutation_p.Q230K|RBM47_uc003gvg.1_Missense_Mutation_p.Q268K	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	268	RRM 3.					nucleus	nucleotide binding|RNA binding			breast(3)	3						GGGTTGAACTGGCCGAAGCTC	0.592													7	87					8.12818e-05	8.19473e-05	1	1	0
YTHDC1	91746	broad.mit.edu	37	4	69203552	69203552	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:69203552G>A	uc003hdx.2	-	3	550	c.197C>T	c.(196-198)TCA>TTA	p.S66L	YTHDC1_uc003hdy.2_Missense_Mutation_p.S66L	NM_001031732	NP_001026902	Q96MU7	YTDC1_HUMAN	splicing factor YT521-B isoform 1	66										upper_aerodigestive_tract(1)|ovary(1)	2						CAGTTGTCTAGAATGGACAGA	0.328													16	54					0	0	1	0	0
AMTN	401138	broad.mit.edu	37	4	71396990	71396990	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:71396990G>A	uc003hfk.1	+	8	681	c.592G>A	c.(592-594)GAG>AAG	p.E198K	AMTN_uc010ihy.1_Missense_Mutation_p.E197K	NM_212557	NP_997722	Q6UX39	AMTN_HUMAN	amelotin precursor	198					biomineral tissue development|cell adhesion|odontogenesis of dentine-containing tooth	basal lamina|cell-cell junction				large_intestine(1)|central_nervous_system(1)	2			Lung(101;0.235)			ACATGCCATCGAGGAAGCCAC	0.517													9	34					0	0	1	0	0
ALB	213	broad.mit.edu	37	4	74274469	74274469	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:74274469G>A	uc003hgs.3	+	4	502	c.429G>A	c.(427-429)GAG>GAA	p.E143E	ALB_uc003hgw.3_Intron|ALB_uc011cbe.1_Intron|ALB_uc003hgt.3_Silent_p.E143E|ALB_uc010iii.2_Intron|ALB_uc003hgu.3_Intron|ALB_uc003hgv.3_Intron|ALB_uc011cbf.1_Silent_p.E33E|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_5'Flank	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	143	Albumin 1.		E -> K (in Nagoya).		bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	TGAGACCAGAGGTTGATGTGA	0.383													19	47					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79461835	79461835	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:79461835G>A	uc003hlb.2	+	74	12036	c.11596G>A	c.(11596-11598)GAT>AAT	p.D3866N		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3861	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GATCCTTGATGATTCCCTCAT	0.552													12	22					0	0	1	0	0
GK2	2712	broad.mit.edu	37	4	80327860	80327860	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:80327860G>A	uc003hlu.2	-	1	1513	c.1495C>T	c.(1495-1497)CGT>TGT	p.R499C		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	499				R -> C (in Ref. 2; BAF84930).	glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						GTGGCATAACGAATTTCACTT	0.478													43	96					0	0	1	0	0
GK2	2712	broad.mit.edu	37	4	80328097	80328097	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:80328097G>A	uc003hlu.2	-	1	1276	c.1258C>T	c.(1258-1260)CGT>TGT	p.R420C		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	420					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						TGCAAATGACGAAGTGGAATT	0.393													40	82					0	0	1	0	0
BMPR1B	658	broad.mit.edu	37	4	96036835	96036835	+	Splice_Site	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:96036835G>A	uc003htm.3	+	6	521	c.247_splice	c.e6-1	p.D83_splice	BMPR1B_uc010ilb.2_Splice_Site_p.D83_splice|BMPR1B_uc003htn.3_Splice_Site_p.D83_splice	NM_001203	NP_001194	O00238	BMR1B_HUMAN	bone morphogenetic protein receptor, type IB						BMP signaling pathway|cartilage condensation|eye development|limb morphogenesis|ovarian cumulus expansion|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	receptor complex	ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta receptor activity			lung(4)|skin(2)|stomach(1)|breast(1)	8		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.51e-07)		TTCGATTATAGGACACTCCCA	0.338													20	48					0	0	1	0	0
ADH1A	124	broad.mit.edu	37	4	100200661	100200661	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:100200661G>A	uc003hur.1	-	8	1096	c.1025C>T	c.(1024-1026)TCA>TTA	p.S342L	uc003hum.1_Intron|ADH1A_uc011ceg.1_Missense_Mutation_p.S342L	NM_000667	NP_000658	P07327	ADH1A_HUMAN	class I alcohol dehydrogenase, alpha subunit	342					ethanol oxidation|transcription, DNA-dependent|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|protein binding|zinc ion binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(123;9.56e-08)	Fomepizole(DB01213)|NADH(DB00157)	TGCATCCAATGAAAACTTCTT	0.333													17	100					0	0	1	0	0
TACR3	6870	broad.mit.edu	37	4	104579460	104579461	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:104579460_104579461GG>AA	uc003hxe.1	-	2	791_792	c.648_649CC>TT	c.(646-651)TTCCCT>TTTTCT	p.P217S		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	217	Helical; Name=4; (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		AGACACTGAGGGAAGGCAAGTA	0.426													27	68					0	0	1	0	0
TACR3	6870	broad.mit.edu	37	4	104640335	104640335	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:104640335G>A	uc003hxe.1	-	1	641	c.498C>T	c.(496-498)ATC>ATT	p.I166I		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	166	Helical; Name=3; (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		ACACAGCTGTGATAGGAAAGA	0.522													17	39					0	0	1	0	0
EGF	1950	broad.mit.edu	37	4	110865019	110865019	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:110865019G>A	uc003hzy.3	+	4	983	c.531G>A	c.(529-531)GAG>GAA	p.E177E	EGF_uc011cfu.1_Silent_p.E177E|EGF_uc011cfv.1_Silent_p.E177E	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	177	LDL-receptor class B 3.|Extracellular (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	GGTCTTCAGAGGTGGCTGGAA	0.433													13	50					0	0	1	0	0
ENPEP	2028	broad.mit.edu	37	4	111409736	111409736	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:111409736G>A	uc003iab.3	+	2	1026	c.684G>A	c.(682-684)AGG>AGA	p.R228R		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	228	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	CAGATGCCAGGAAATCTTTTC	0.393													10	31					0	0	1	0	0
NDST4	64579	broad.mit.edu	37	4	115997885	115997885	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:115997885C>T	uc003ibu.2	-	2	987	c.308G>A	c.(307-309)CGA>CAA	p.R103Q	NDST4_uc010imw.2_Intron	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	103	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		GTACTGAAATCGGCTGGACTC	0.408													28	53					0	0	1	0	0
NDST4	64579	broad.mit.edu	37	4	115998159	115998159	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:115998159G>A	uc003ibu.2	-	2	713	c.34C>T	c.(34-36)CGA>TGA	p.R12*	NDST4_uc010imw.2_Intron	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	12	Cytoplasmic (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		ATCAATGTTCGAAAACTTCTC	0.343													16	10					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126373155	126373155	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:126373155C>T	uc003ifj.3	+	9	10984	c.10984C>T	c.(10984-10986)CCA>TCA	p.P3662S	FAT4_uc011cgp.1_Missense_Mutation_p.P1960S|FAT4_uc003ifi.1_Missense_Mutation_p.P1140S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3662	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CTTCAGTATTCCAGGGGGTAC	0.507													11	99					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138452175	138452175	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:138452175G>A	uc003ihe.3	-	1	1455	c.1068C>T	c.(1066-1068)ATC>ATT	p.I356I	PCDH18_uc003ihf.3_Silent_p.I349I|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Silent_p.I136I|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	356	Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					ACATGAGGTTGATGTTAATTT	0.363													15	33					0	0	1	0	0
MMAA	166785	broad.mit.edu	37	4	146575266	146575266	+	Missense_Mutation	SNP	C	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:146575266C>A	uc003ikh.3	+	6	1025	c.940C>A	c.(940-942)CGC>AGC	p.R314S	MMAA_uc010iow.2_RNA	NM_172250	NP_758454	Q8IVH4	MMAA_HUMAN	methylmalonic aciduria type A precursor	314						mitochondrion	GTP binding|nucleoside-triphosphatase activity			ovary(1)	1	all_hematologic(180;0.151)				Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GAAATTACTCCGCAAACGTTC	0.428													45	109					2.00842e-17	2.07088e-17	1	1	0
NR3C2	4306	broad.mit.edu	37	4	149356521	149356521	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:149356521C>T	uc003ilj.3	-	2	1826	c.1492G>A	c.(1492-1494)GAT>AAT	p.D498N	NR3C2_uc003ilk.3_Missense_Mutation_p.D498N|NR3C2_uc010iph.2_RNA	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	498	Modulating.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	CTCCCATCATCTGGTTCTTGT	0.493													36	86					0	0	1	0	0
DCLK2	166614	broad.mit.edu	37	4	151023931	151023931	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:151023931C>T	uc003ilm.3	+	2	823	c.723C>T	c.(721-723)GTC>GTT	p.V241V	DCLK2_uc003iln.3_Silent_p.V241V|DCLK2_uc003ilo.3_Silent_p.V241V|DCLK2_uc003ilp.3_RNA	NM_001040260	NP_001035350	Q8N568	DCLK2_HUMAN	doublecortin-like kinase 2 isoform a	241	Doublecortin 2.				intracellular signal transduction	cytoplasm|cytoskeleton	ATP binding|protein serine/threonine kinase activity			ovary(3)	3	all_hematologic(180;0.151)					ACTCAGGAGTCGTCAAGAGGC	0.463													10	45					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155180844	155180844	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:155180844G>A	uc003inw.2	-	20	5277	c.5277C>T	c.(5275-5277)ATC>ATT	p.I1759I		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	1759	Cadherin 15.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		CAGCTAAAACGATGAGTTGAA	0.358													33	56					0	0	1	0	0
GRIA2	2891	broad.mit.edu	37	4	158224719	158224719	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:158224719C>T	uc003ipm.3	+	3	704	c.245C>T	c.(244-246)TCG>TTG	p.S82L	GRIA2_uc011cit.1_Missense_Mutation_p.S35L|GRIA2_uc003ipl.3_Missense_Mutation_p.S82L|GRIA2_uc003ipk.3_Missense_Mutation_p.S35L|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	82	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	TCCCAGTTTTCGAGAGGAGTC	0.368													17	59					0	0	1	0	0
GRIA2	2891	broad.mit.edu	37	4	158224761	158224761	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:158224761C>T	uc003ipm.3	+	3	746	c.287C>T	c.(286-288)TCT>TTT	p.S96F	GRIA2_uc011cit.1_Missense_Mutation_p.S49F|GRIA2_uc003ipl.3_Missense_Mutation_p.S96F|GRIA2_uc003ipk.3_Missense_Mutation_p.S49F|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	96	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	GACAAGAAGTCTGTAAATACC	0.393													54	88					0	0	1	0	0
TKTL2	84076	broad.mit.edu	37	4	164393182	164393182	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:164393182C>T	uc003iqp.3	-	1	1866	c.1705G>A	c.(1705-1707)GAA>AAA	p.E569K		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	569						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				ATGCCACCTTCCCTGTAGTGA	0.532													45	101					0	0	1	0	0
CPE	1363	broad.mit.edu	37	4	166405617	166405617	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:166405617C>T	uc003irg.3	+	5	1111	c.834C>T	c.(832-834)TTC>TTT	p.F278F		NM_001873	NP_001864	P16870	CBPE_HUMAN	carboxypeptidase E preproprotein	278					cardiac left ventricle morphogenesis|neuropeptide signaling pathway|protein modification process	extracellular region|nucleus|plasma membrane	metallocarboxypeptidase activity|protein binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0962)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.137)	Glucagon recombinant(DB00040)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	ACGCCATTTTCCAAAGCTTGG	0.493													78	271					0	0	1	0	0
TLL1	7092	broad.mit.edu	37	4	166986936	166986937	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:166986936_166986937CC>TT	uc003irh.1	+	16	2756_2757	c.2109_2110CC>TT	c.(2107-2112)TCCCAG>TCTTAG	p.Q704*	TLL1_uc011cjn.1_Nonsense_Mutation_p.Q727*|TLL1_uc011cjo.1_Nonsense_Mutation_p.Q528*	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	704	CUB 3.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		TGATCACATCCCAGTTCAACAA	0.391													24	91					0	0	1	0	0
DDX60	55601	broad.mit.edu	37	4	169206021	169206021	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:169206021G>A	uc003irp.2	-	12	1803	c.1511C>T	c.(1510-1512)TCT>TTT	p.S504F		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	504							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		GGGTTTATGAGAATGCCAGTG	0.368													15	50					0	0	1	0	0
SH3RF1	57630	broad.mit.edu	37	4	170043353	170043353	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:170043353G>A	uc003isa.1	-	7	1579	c.1244C>T	c.(1243-1245)CCA>CTA	p.P415L	SH3RF1_uc010irc.1_Intron	NM_020870	NP_065921	Q7Z6J0	SH3R1_HUMAN	SH3 domain containing ring finger 1	415						Golgi apparatus|lamellipodium|perinuclear region of cytoplasm	ligase activity|zinc ion binding			breast(2)|lung(1)	3		Prostate(90;0.00267)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)		GGTGGCGCCTGGTGGTGTGGA	0.567													11	26					0	0	1	0	0
GLRA3	8001	broad.mit.edu	37	4	175577921	175577921	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:175577921C>T	uc003ity.1	-	9	1592	c.1089G>A	c.(1087-1089)CTG>CTA	p.L363L	GLRA3_uc003itz.1_Intron	NM_006529	NP_006520	O75311	GLRA3_HUMAN	glycine receptor, alpha 3 isoform a	363	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(3)	3		Prostate(90;0.00601)|Breast(14;0.0091)|Melanoma(52;0.00959)|Renal(120;0.0183)|all_neural(102;0.0891)|all_hematologic(60;0.107)		all cancers(43;4.99e-18)|Epithelial(43;1.18e-16)|OV - Ovarian serous cystadenocarcinoma(60;5.88e-09)|STAD - Stomach adenocarcinoma(60;0.00442)|GBM - Glioblastoma multiforme(59;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0421)	Glycine(DB00145)	AAAACTTCTCCAGTGCAAAAG	0.353													7	44					0	0	1	0	0
ADAM29	11086	broad.mit.edu	37	4	175897421	175897421	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:175897421G>A	uc003iuc.2	+	5	1415	c.745G>A	c.(745-747)GAG>AAG	p.E249K	ADAM29_uc003iud.2_Missense_Mutation_p.E249K|ADAM29_uc010irr.2_Missense_Mutation_p.E249K|ADAM29_uc011cki.1_Missense_Mutation_p.E249K	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	249	Peptidase M12B.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		ATTTGGTTTGGAGATCTGGAC	0.393													47	126					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183601455	183601455	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:183601455G>A	uc003ivd.1	+	8	1629	c.1592G>A	c.(1591-1593)GGA>GAA	p.G531E	ODZ3_uc003ive.1_5'UTR	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	531	Extracellular (Potential).|EGF-like 1.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TGCGTTTCTGGAACTTGCCAT	0.423													5	31					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183664465	183664465	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:183664465C>T	uc003ivd.1	+	18	3559	c.3522C>T	c.(3520-3522)GCC>GCT	p.A1174A	ODZ3_uc003ive.1_Silent_p.A580A	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1174	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		AGTTACTGGCCCCAGTGGCGC	0.527													19	39					0	0	1	0	0
TLR3	7098	broad.mit.edu	37	4	187004063	187004063	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr4:187004063C>T	uc003iyq.2	+	4	1324	c.1223C>T	c.(1222-1224)CCC>CTC	p.P408L	TLR3_uc011ckz.1_Missense_Mutation_p.P131L|TLR3_uc003iyr.2_Missense_Mutation_p.P131L	NM_003265	NP_003256	O15455	TLR3_HUMAN	toll-like receptor 3 precursor	408	LRR 15.|Lumenal (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|defense response to bacterium|defense response to virus|detection of virus|hyperosmotic response|I-kappaB phosphorylation|inflammatory response|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of osteoclast differentiation|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|toll-like receptor 3 signaling pathway	endoplasmic reticulum membrane|endosome membrane|integral to plasma membrane	double-stranded RNA binding|transmembrane receptor activity			ovary(2)|prostate(1)|lung(1)|breast(1)	5		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(30;1.14e-05)|GBM - Glioblastoma multiforme(59;0.000107)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.16)		GCTCATTCTCCCTTACACATA	0.373													12	28					0	0	1	0	0
IRX2	153572	broad.mit.edu	37	5	2749165	2749165	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:2749165C>T	uc003jda.2	-	3	899	c.657G>A	c.(655-657)GGG>GGA	p.G219G	IRX2_uc003jdb.2_Silent_p.G219G	NM_001134222	NP_001127694	Q9BZI1	IRX2_HUMAN	iroquois homeobox 2	219						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1				GBM - Glioblastoma multiforme(108;0.204)		GCAGGCTGATCCCTGTGGGGG	0.741													8	34					0	0	1	0	0
KIAA0947	23379	broad.mit.edu	37	5	5461236	5461236	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:5461236G>A	uc003jdm.3	+	13	2011	c.1789G>A	c.(1789-1791)GAA>AAA	p.E597K		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	597										ovary(1)|central_nervous_system(1)	2						AAAGGAAAAAGAAGATACTCA	0.398													49	93					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13811819	13811819	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:13811819C>T	uc003jfd.2	-	44	7386	c.7344G>A	c.(7342-7344)GAG>GAA	p.E2448E		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2448					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCTCCAGCACCTCCATCTTGT	0.433									Kartagener_syndrome				36	76					0	0	1	0	0
PDZD2	23037	broad.mit.edu	37	5	32074319	32074319	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:32074319G>A	uc003jhl.2	+	18	3495	c.3107G>A	c.(3106-3108)GGT>GAT	p.G1036D	PDZD2_uc003jhm.2_Missense_Mutation_p.G1036D|PDZD2_uc011cnx.1_Missense_Mutation_p.G862D	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	1036					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CCTCTTCTTGGTAGCTCAGTG	0.577													82	71					0	0	1	0	0
C7	730	broad.mit.edu	37	5	40937767	40937767	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:40937767G>A	uc003jmh.2	+	6	656	c.542G>A	c.(541-543)GGA>GAA	p.G181E	C7_uc011cpn.1_Intron	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	181	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				AGGCTGAGTGGAAATGTCCTG	0.289													4	18					0	0	1	0	0
C7	730	broad.mit.edu	37	5	40976884	40976884	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:40976884C>T	uc003jmh.2	+	16	2221	c.2107C>T	c.(2107-2109)CAG>TAG	p.Q703*	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	703	Complement control factor I module 1.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				GCCTAAATGTCAGCGCTGGGA	0.388													10	10					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41058176	41058176	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:41058176G>A	uc003jmj.3	-	7	1235	c.745C>T	c.(745-747)CAT>TAT	p.H249Y	HEATR7B2_uc003jmi.3_5'UTR	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	249	HEAT 2.						binding			ovary(6)|central_nervous_system(2)	8						TGAGTGACATGGAAATCAATC	0.522													9	49					0	0	1	0	0
C6	729	broad.mit.edu	37	5	41155163	41155163	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:41155163G>A	uc003jmk.2	-	14	2222	c.2012C>T	c.(2011-2013)TCA>TTA	p.S671L	C6_uc003jml.1_Missense_Mutation_p.S671L	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	671	Sushi 1.|C5b-binding domain.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				AGTAAGGCATGAAATTTCAAC	0.398													21	99					0	0	1	0	0
MGC42105	167359	broad.mit.edu	37	5	43280578	43280578	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:43280578A>T	uc003jno.2	+	4	1939	c.1058A>T	c.(1057-1059)GAA>GTA	p.E353V		NM_153361	NP_699192	Q8IY84	NIM1_HUMAN	serine/threonine-protein kinase NIM1	353							ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|stomach(1)|large_intestine(1)|breast(1)	9						CTCAAGGAAGAAGAAAATGAG	0.448													26	143					0	0	1	0	0
PARP8	79668	broad.mit.edu	37	5	50125781	50125781	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:50125781C>T	uc003jon.3	+	23	2401	c.2219C>T	c.(2218-2220)TCA>TTA	p.S740L	PARP8_uc011cpz.1_Missense_Mutation_p.S632L|PARP8_uc003joo.2_Missense_Mutation_p.S740L|PARP8_uc003jop.2_Missense_Mutation_p.S698L	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	740	PARP catalytic.					intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				TCAAGCATATCATTTGGTTAC	0.353													13	66					0	0	1	0	0
DEPDC1B	55789	broad.mit.edu	37	5	59934624	59934624	+	Missense_Mutation	SNP	T	G	G			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:59934624T>G	uc003jsh.2	-	7	924	c.851A>C	c.(850-852)GAG>GCG	p.E284A	DEPDC1B_uc011cqm.1_Missense_Mutation_p.E284A|DEPDC1B_uc011cqn.1_Missense_Mutation_p.E257A	NM_018369	NP_060839	Q8WUY9	DEP1B_HUMAN	DEP domain containing 1B isoform 1	284	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)	1		Lung NSC(810;0.000214)|Prostate(74;0.0147)|Breast(144;0.0991)|Ovarian(174;0.17)				AAGTAGAGGCTCTTTCAAGTG	0.348													9	53					0	0	1	0	0
PIK3R1	5295	broad.mit.edu	37	5	67591097	67591097	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:67591097A>G	uc003jva.2	+	13	2250	c.1690A>G	c.(1690-1692)AAC>GAC	p.N564D	PIK3R1_uc003jvb.2_Missense_Mutation_p.N564D|PIK3R1_uc003jvc.2_Missense_Mutation_p.N264D|PIK3R1_uc003jvd.2_Missense_Mutation_p.N294D|PIK3R1_uc003jve.2_Missense_Mutation_p.N243D|PIK3R1_uc011crb.1_Missense_Mutation_p.N234D	NM_181523	NP_852664	P27986	P85A_HUMAN	phosphoinositide-3-kinase, regulatory subunit 1	564					epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|growth hormone receptor signaling pathway|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|interspecies interaction between organisms|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|T cell costimulation|T cell receptor signaling pathway	1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex	1-phosphatidylinositol binding|ErbB-3 class receptor binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase regulator activity|protein phosphatase binding	p.N564D(3)|p.D560_S565del(1)|p.N564K(1)|p.?(1)		endometrium(34)|central_nervous_system(27)|large_intestine(20)|breast(7)|ovary(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|urinary_tract(1)|skin(1)|pancreas(1)	101		Lung NSC(167;1.99e-05)|Prostate(74;0.00308)|Ovarian(174;0.00473)|Colorectal(97;0.0176)		OV - Ovarian serous cystadenocarcinoma(47;3.76e-51)|Lung(70;0.0211)	Isoproterenol(DB01064)	CAAACGTATGAACAGCATTAA	0.373			Mis|F|O		gliobastoma|ovarian|colorectal					TCGA GBM(4;<1E-08)			26	84					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90103462	90103462	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:90103462C>T	uc003kju.2	+	73	14976	c.14880C>T	c.(14878-14880)TTC>TTT	p.F4960F	GPR98_uc003kjt.2_Silent_p.F2666F|GPR98_uc003kjw.2_Silent_p.F621F	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4960	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AAGGAGTTTTCCTGTGGACGT	0.468													9	22					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90106484	90106484	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:90106484C>T	uc003kju.2	+	74	15503	c.15407C>T	c.(15406-15408)TCC>TTC	p.S5136F	GPR98_uc003kjt.2_Missense_Mutation_p.S2842F|GPR98_uc003kjw.2_Missense_Mutation_p.S797F	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5136	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ATGGATATTTCCTTCCCCGAG	0.433													20	192					0	0	1	0	0
AQPEP	206338	broad.mit.edu	37	5	115319105	115319105	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:115319105C>T	uc003kro.2	+	2	981	c.817C>T	c.(817-819)CTT>TTT	p.L273F	AQPEP_uc003krp.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	273	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						TTATGTGGCCCTTTCCAACAT	0.368													20	24					0	0	1	0	0
SNCAIP	9627	broad.mit.edu	37	5	121759222	121759222	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:121759222A>G	uc003ksw.1	+	4	996	c.790A>G	c.(790-792)AGT>GGT	p.S264G	SNCAIP_uc011cwl.1_Intron|SNCAIP_uc010jct.2_Missense_Mutation_p.S264G|SNCAIP_uc003ksx.1_Missense_Mutation_p.S311G|SNCAIP_uc003ksy.1_Intron|SNCAIP_uc003ksz.1_Intron|SNCAIP_uc010jcu.2_Intron|SNCAIP_uc011cwm.1_Intron|SNCAIP_uc003kta.1_Intron|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Intron|SNCAIP_uc010jcx.1_Missense_Mutation_p.S264G	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	264					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		CAAGACATTTAGTGATCCTCA	0.473													4	54					0	0	1	0	0
LOC153328	153328	broad.mit.edu	37	5	135207534	135207534	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:135207534C>T	uc003laz.1	+	5	978	c.806C>T	c.(805-807)TCT>TTT	p.S269F	LOC153328_uc003lba.2_Intron			Q6ZT89	S2548_HUMAN	RecName: Full=Putative mitochondrial carrier protein FLJ44862;	Error:Variant_position_missing_in_Q6ZT89_after_alignment					transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CCCAACAATTCTTTGTTAGGT	0.562													14	12					0	0	1	0	0
TRPC7	57113	broad.mit.edu	37	5	135601921	135601921	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:135601921C>T	uc003lbn.1	-	4	1332	c.1329G>A	c.(1327-1329)ATG>ATA	p.M443I	TRPC7_uc010jef.1_Missense_Mutation_p.M380I|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.M374I|TRPC7_uc010jei.1_Missense_Mutation_p.M319I|TRPC7_uc010jej.1_Intron	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	444	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			AGACCCACTTCATAATGAGCA	0.383													10	112					0	0	1	0	0
TRPC7	57113	broad.mit.edu	37	5	135692398	135692398	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:135692398C>T	uc003lbn.1	-	1	678	c.675G>A	c.(673-675)GCG>GCA	p.A225A	TRPC7_uc010jef.1_Silent_p.A217A|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Silent_p.A217A|TRPC7_uc010jei.1_Silent_p.A217A|TRPC7_uc010jej.1_5'UTR	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	226	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			AGGCAGCACTCGCCAGTCCTT	0.557													11	15					0	0	1	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139876829	139876829	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:139876829G>A	uc003lfs.1	+	15	3094	c.2970G>A	c.(2968-2970)CAG>CAA	p.Q990Q	ANKHD1_uc003lfq.1_Silent_p.Q1009Q|ANKHD1_uc003lfr.2_Silent_p.Q990Q|ANKHD1_uc003lft.1_Intron|ANKHD1_uc003lfu.1_Silent_p.Q470Q|ANKHD1_uc003lfv.1_Intron	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	990						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCCAGCTCAGACGCTTACCG	0.418													20	117					0	0	1	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139918661	139918661	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:139918661C>T	uc003lfs.1	+	33	7686	c.7562C>T	c.(7561-7563)GCC>GTC	p.A2521V	ANKHD1_uc003lfr.2_Missense_Mutation_p.A2521V|ANKHD1-EIF4EBP3_uc011czh.1_Missense_Mutation_p.A1277V|ANKHD1_uc003lfw.2_Missense_Mutation_p.A1176V|ANKHD1_uc010jfl.2_Missense_Mutation_p.A897V|ANKHD1-EIF4EBP3_uc003lfx.1_Missense_Mutation_p.A666V	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	2521						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCACTGATGCCCAGCAGGTA	0.368													6	38					0	0	1	0	0
PCDHA7	56141	broad.mit.edu	37	5	140215240	140215240	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:140215240G>A	uc003lhq.2	+	1	1272	c.1272G>A	c.(1270-1272)GTG>GTA	p.V424V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Silent_p.V424V	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	424	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATGAGCTGGTGGTTACCGCGC	0.632													76	111					0	0	1	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140307480	140307480	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:140307480G>A	uc003lih.2	+	1	1179	c.1003G>A	c.(1003-1005)GAT>AAT	p.D335N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.D335N	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	335	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGACGTGAACGATCATGCCCC	0.532													87	89					0	0	1	0	0
PCDHB8	56128	broad.mit.edu	37	5	140559510	140559510	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:140559510G>A	uc011dai.1	+	1	2081	c.1895G>A	c.(1894-1896)AGC>AAC	p.S632N	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	632	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGGCTGCTGAGCGAGCGCGAC	0.687													12	127					0	0	1	0	0
PCDHB11	56125	broad.mit.edu	37	5	140580499	140580499	+	Silent	SNP	C	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:140580499C>A	uc003liy.2	+	1	1152	c.1152C>A	c.(1150-1152)TCC>TCA	p.S384S	PCDHB11_uc011daj.1_Silent_p.S19S	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	384	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTGTTTGTTCCATTCCGGAAG	0.448													37	104					9.8876e-21	1.02073e-20	1	1	0
PCDHB12	56124	broad.mit.edu	37	5	140589591	140589591	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:140589591G>A	uc003liz.2	+	1	1301	c.1112G>A	c.(1111-1113)CGA>CAA	p.R371Q	PCDHB12_uc011dak.1_Missense_Mutation_p.R34Q	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	371	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCAGGATACGAGACAGAGAC	0.433													19	82					0	0	1	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140720260	140720260	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:140720260C>T	uc003ljk.1	+	1	1907	c.1722C>T	c.(1720-1722)GGC>GGT	p.G574G	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Silent_p.G574G	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	574	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTTCCACTGGCGTGGAGCTGG	0.627													35	236					0	0	1	0	0
PDE6A	5145	broad.mit.edu	37	5	149245817	149245817	+	Splice_Site	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:149245817C>T	uc003lrg.3	-	20	2395	c.2275_splice	c.e20-1	p.P759_splice		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A						cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			CCATCATGGGCTGTCATGGGG	0.348													5	63					0	0	1	0	0
FAT2	2196	broad.mit.edu	37	5	150922683	150922683	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:150922683G>A	uc003lue.3	-	9	8018	c.8005C>T	c.(8005-8007)CCT>TCT	p.P2669S	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	2669	Cadherin 23.|Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TTCCAGTGAGGAGGGCCTCCA	0.463													7	91					0	0	1	0	0
WWC1	23286	broad.mit.edu	37	5	167882494	167882494	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:167882494C>T	uc003lzu.2	+	19	2885	c.2792C>T	c.(2791-2793)TCC>TTC	p.S931F	WWC1_uc003lzv.2_Missense_Mutation_p.S931F|WWC1_uc011den.1_Missense_Mutation_p.S931F|WWC1_uc003lzw.2_Missense_Mutation_p.S730F|WWC1_uc010jjf.1_Missense_Mutation_p.S203F	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	931	Interaction with histone H3.				cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		AAGACCTTCTCCCCAGGACCC	0.582													25	151					0	0	1	0	0
BNIP1	662	broad.mit.edu	37	5	172571559	172571559	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:172571559C>T	uc003mcj.3	+	1	115	c.11C>T	c.(10-12)CCC>CTC	p.P4L	BNIP1_uc003mci.3_Missense_Mutation_p.P4L|BNIP1_uc003mck.3_Missense_Mutation_p.P4L|BNIP1_uc003mcl.3_Missense_Mutation_p.P4L	NM_001205	NP_001196	Q12981	SEC20_HUMAN	BCL2/adenovirus E1B 19kD interacting protein 1	4	Cytoplasmic (Potential).				anti-apoptosis|apoptosis|endoplasmic reticulum membrane fusion|endoplasmic reticulum organization|induction of apoptosis|vesicle-mediated transport	integral to endoplasmic reticulum membrane|nuclear envelope|SNARE complex	protein binding			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			ATGGCGGCTCCCCAAGACGTC	0.612											OREG0017054	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	18					0	0	1	0	0
DRD1	1812	broad.mit.edu	37	5	174869868	174869868	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:174869868G>A	uc003mcz.2	-	2	1180	c.235C>T	c.(235-237)CCC>TCC	p.P79S		NM_000794	NP_000785	P21728	DRD1_HUMAN	dopamine receptor D1	79	Helical; Name=2; (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|adult walking behavior|cerebral cortex GABAergic interneuron migration|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|mating behavior|positive regulation of cAMP biosynthetic process|positive regulation of cell migration|positive regulation of potassium ion transport|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of synaptic transmission, glutamatergic|prepulse inhibition|response to drug|synapse assembly|visual learning	endoplasmic reticulum membrane|membrane fraction	protein binding			ovary(2)|skin(1)	3	all_cancers(89;0.00895)|Renal(175;0.000159)|Lung NSC(126;0.00625)|all_lung(126;0.0104)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)		Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Carphenazine(DB01038)|Chlorprothixene(DB01239)|Clozapine(DB00363)|Cocaine(DB00907)|Dopamine(DB00988)|Fenoldopam(DB00800)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Methylergonovine(DB00353)|Minaprine(DB00805)|Olanzapine(DB00334)|Pegademase bovine(DB00061)|Pergolide(DB01186)|Perphenazine(DB00850)|Prochlorperazine(DB00433)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Triflupromazine(DB00508)|Zuclopenthixol(DB01624)	GCCTTCCAGGGCATGACCAGG	0.552													17	50					0	0	1	0	0
C5orf25	375484	broad.mit.edu	37	5	175716691	175716691	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:175716691G>A	uc003mds.3	+	4	514	c.107G>A	c.(106-108)AGG>AAG	p.R36K	C5orf25_uc003mdt.3_Intron|C5orf25_uc003mdr.3_Intron|C5orf25_uc011dfk.1_Missense_Mutation_p.R55K|uc003mdu.1_5'UTR			Q8NDZ2	CE025_HUMAN	RecName: Full=Uncharacterized protein C5orf25;	36											0	all_cancers(89;0.00381)|Renal(175;0.000269)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.119)		ACCAGACCAAGGACAAAAGAT	0.413													6	23					0	0	1	0	0
ZNF354A	6940	broad.mit.edu	37	5	178139311	178139311	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:178139311C>T	uc003mjj.2	-	5	1766	c.1568G>A	c.(1567-1569)CGA>CAA	p.R523Q		NM_005649	NP_005640	O60765	Z354A_HUMAN	zinc finger protein 354A	523	C2H2-type 11.				regulation of transcription from RNA polymerase II promoter|sensory perception of sound|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(89;0.000536)|Renal(175;0.000159)|all_epithelial(37;0.000221)|Lung NSC(126;0.00308)|all_lung(126;0.00536)	all_cancers(40;0.0452)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.185)		TTCCTCACATCGATATGGTTT	0.388													28	105					0	0	1	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178585775	178585775	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:178585775C>T	uc003mjw.2	-	6	1081	c.1081G>A	c.(1081-1083)GAT>AAT	p.D361N	ADAMTS2_uc011dgm.1_Missense_Mutation_p.D361N	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	361	Peptidase M12B.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		ATGGCGTGATCGTGGTATTCA	0.607													27	100					0	0	1	0	0
HNRNPH1	3187	broad.mit.edu	37	5	179044567	179044567	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:179044567G>A	uc003mkf.3	-	9	1111	c.1005C>T	c.(1003-1005)TTC>TTT	p.F335F	HNRNPH1_uc011dgn.1_Silent_p.F65F|HNRNPH1_uc003mkg.3_Silent_p.F243F|HNRNPH1_uc003mke.3_Silent_p.F335F|HNRNPH1_uc003mkh.3_Silent_p.F335F	NM_005520	NP_005511	P31943	HNRH1_HUMAN	heterogeneous nuclear ribonucleoprotein H1	335	RRM 3.|2 X 16 AA Gly-rich approximate repeats.				regulation of RNA splicing	actin cytoskeleton|catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|poly(U) RNA binding|protein binding				0						CATGAGTTGCGAACTCGACAT	0.438													78	91					0	0	1	0	0
BTNL3	10917	broad.mit.edu	37	5	180432752	180432752	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr5:180432752C>T	uc003mmr.2	+	8	1409	c.1281C>T	c.(1279-1281)TCC>TCT	p.S427S	BTNL3_uc010jlp.2_Silent_p.S212S	NM_197975	NP_932079	Q6UXE8	BTNL3_HUMAN	butyrophilin-like 3 precursor	427	B30.2/SPRY.|Cytoplasmic (Potential).				lipid metabolic process	integral to membrane					0	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.00336)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)|all_lung(500;0.248)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000272)			ATGACCAGTCCCTTATTTATA	0.483													11	60					0	0	1	0	0
F13A1	2162	broad.mit.edu	37	6	6266848	6266848	+	Nonsense_Mutation	SNP	G	A	A	rs121913065		TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr6:6266848G>A	uc003mwv.2	-	4	637	c.514C>T	c.(514-516)CGA>TGA	p.R172*	F13A1_uc011dib.1_Nonsense_Mutation_p.R109*	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	172					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity	p.R172Q(1)		ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	CGACTGGTTCGAAGTACGCCA	0.458													64	108					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7584309	7584309	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr6:7584309C>T	uc003mxp.1	+	24	7093	c.6814C>T	c.(6814-6816)CTT>TTT	p.L2272F	DSP_uc003mxq.1_Missense_Mutation_p.L1673F	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2272	Plectin 7.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		AAAACAGAAGCTTGGCATTTA	0.468													39	68					0	0	1	0	0
MBOAT1	154141	broad.mit.edu	37	6	20109840	20109840	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr6:20109840G>A	uc003ncx.1	-	12	1555	c.1350C>T	c.(1348-1350)ATC>ATT	p.I450I	MBOAT1_uc011dji.1_Silent_p.I301I	NM_001080480	NP_001073949	Q6ZNC8	MBOA1_HUMAN	membrane bound O-acyltransferase domain	450	Helical; (Potential).				phospholipid biosynthetic process	integral to membrane	acyltransferase activity				0	all_cancers(95;0.244)|Breast(50;0.0379)|Ovarian(93;0.0473)|all_epithelial(95;0.109)		OV - Ovarian serous cystadenocarcinoma(7;0.00392)|all cancers(50;0.0117)|Epithelial(50;0.0454)			TGTATAAGCTGATGGTCGGTT	0.468													10	116					0	0	1	0	0
GPLD1	2822	broad.mit.edu	37	6	24466921	24466921	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr6:24466921C>T	uc003ned.1	-	10	919	c.808G>A	c.(808-810)GAG>AAG	p.E270K	GPLD1_uc010jpr.1_Missense_Mutation_p.E107K|GPLD1_uc010jps.1_Missense_Mutation_p.E270K	NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	270						extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						GTCCCATTCTCCAACATGAAG	0.403													16	28					0	0	1	0	0
BTN3A1	11119	broad.mit.edu	37	6	26405846	26405846	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr6:26405846C>T	uc003nhv.2	+	2	423	c.55C>T	c.(55-57)CTT>TTT	p.L19F	BTN3A1_uc011dkj.1_Missense_Mutation_p.L19F|BTN3A1_uc011dkk.1_Missense_Mutation_p.L19F|BTN3A1_uc010jqj.2_Missense_Mutation_p.L19F	NM_007048	NP_008979	O00481	BT3A1_HUMAN	butyrophilin, subfamily 3, member A1 isoform a	19					lipid metabolic process	integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2						TGTCTGCCTCCTTTTGCTTCA	0.468													23	94					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28540752	28540752	+	Missense_Mutation	SNP	C	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr6:28540752C>A	uc003nlo.2	-	4	3532	c.2914G>T	c.(2914-2916)GGT>TGT	p.G972C		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	972					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						gaagctgcaccatcagaacat	0													9	111					7.48243e-07	7.60596e-07	1	1	0
SCAND3	114821	broad.mit.edu	37	6	28542443	28542443	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr6:28542443G>A	uc003nlo.2	-	3	2657	c.2039C>T	c.(2038-2040)TCA>TTA	p.S680L		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	680					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TTTGTCTGGTGAAAATGGTGT	0.408													63	145					0	0	1	0	0
OR11A1	26531	broad.mit.edu	37	6	29394623	29394623	+	Missense_Mutation	SNP	C	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr6:29394623C>A	uc003nmg.2	-	1	887	c.796G>T	c.(796-798)GTC>TTC	p.V266F		NM_013937	NP_039225	Q9GZK7	O11A1_HUMAN	olfactory receptor, family 11, subfamily A,	266	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TGGGAATGGACAGCAGAGGGT	0.517													17	101					1.67942e-08	1.7132e-08	1	1	0
UBD	10537	broad.mit.edu	37	6	29523699	29523699	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr6:29523699C>T	uc003nmo.2	-	2	680	c.456G>A	c.(454-456)AAG>AAA	p.K152K	GABBR1_uc003nmp.3_3'UTR	NM_006398	NP_006389	O15205	UBD_HUMAN	ubiquitin D	152	Ubiquitin 2.				aggresome assembly|myeloid dendritic cell differentiation|negative regulation of mitotic prometaphase|positive regulation of apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein ubiquitination|response to interferon-gamma|response to tumor necrosis factor|ubiquitin-dependent protein catabolic process	aggresome|cytoplasm|nucleus	proteasome binding				0						GTAAGTTGCCCTTTCTGATGC	0.463													27	80					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32011786	32011786	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr6:32011786C>T	uc003nzl.2	-	34	11580	c.11378G>A	c.(11377-11379)GGA>GAA	p.G3793E	TNXB_uc003nzg.1_Missense_Mutation_p.G224E|TNXB_uc003nzh.1_Missense_Mutation_p.G262E	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3840	Fibronectin type-III 30.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGCACCACCTCCGTCCGCCAG	0.617													12	12					0	0	1	0	0
PIM1	5292	broad.mit.edu	37	6	37139091	37139092	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr6:37139091_37139092CC>GT	uc003onk.2	+	4	861_862	c.431_432CC>GT	c.(430-432)GCC>GGT	p.A144G	PIM1_uc011dtw.1_5'Flank	NM_002648	NP_002639	P11309	PIM1_HUMAN	non-specific serine/threonine protein kinase	235	Protein kinase.				cell cycle|cell proliferation|multicellular organismal development|negative regulation of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|protein autophosphorylation	cytoplasm|nucleus|plasma membrane	ATP binding|manganese ion binding|protein binding|protein binding|protein serine/threonine kinase activity|transcription factor binding			large_intestine(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(102;0.241)		Adenosine monophosphate(DB00131)	GAGGAGCTGGCCCGCAGCTTCT	0.614			T	BCL6	NHL								53	97					0	0	1	0	0
MOCS1	4337	broad.mit.edu	37	6	39880099	39880099	+	Missense_Mutation	SNP	A	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr6:39880099A>C	uc003opb.2	-	7	1028	c.890T>G	c.(889-891)TTC>TGC	p.F297C	MOCS1_uc003opa.2_Missense_Mutation_p.F297C|MOCS1_uc003opc.2_Missense_Mutation_p.F297C|MOCS1_uc003opd.2_Missense_Mutation_p.F297C|MOCS1_uc003ope.2_Missense_Mutation_p.F210C	NM_005942	NP_005933	Q9NZB8	MOCS1_HUMAN	molybdenum cofactor synthesis-step 1 protein	297	Molybdenum cofactor biosynthesis protein A.				Mo-molybdopterin cofactor biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol|molybdopterin synthase complex|nucleus	4 iron, 4 sulfur cluster binding|4 iron, 4 sulfur cluster binding|catalytic activity|GTP binding|metal ion binding			ovary(1)|liver(1)|central_nervous_system(1)	3	Ovarian(28;0.0355)|Colorectal(47;0.196)					CTGGCCTTGGAAGCCAGGGAT	0.547													46	91					0	0	1	0	0
IMPG1	3617	broad.mit.edu	37	6	76717201	76717201	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr6:76717201C>T	uc003pik.1	-	9	1013	c.883G>A	c.(883-885)GAT>AAT	p.D295N		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	295	SEA 1.				visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				AATTACCCATCTTTTTCTTTC	0.264													11	12					0	0	1	0	0
FRK	2444	broad.mit.edu	37	6	116264184	116264184	+	Missense_Mutation	SNP	A	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr6:116264184A>C	uc003pwi.1	-	7	1752	c.1305T>G	c.(1303-1305)AGT>AGG	p.S435R		NM_002031	NP_002022	P42685	FRK_HUMAN	fyn-related kinase	435	Protein kinase.				negative regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			ovary(3)|lung(3)	6		all_cancers(87;0.00559)|all_epithelial(87;0.00738)|Colorectal(196;0.0465)		all cancers(137;0.0128)|OV - Ovarian serous cystadenocarcinoma(136;0.0209)|GBM - Glioblastoma multiforme(226;0.0459)|Epithelial(106;0.0625)		ATTACTCACCACTGTAAGGCA	0.393													14	18					0	0	1	0	0
SAMD3	154075	broad.mit.edu	37	6	130476083	130476083	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr6:130476083C>T	uc003qbv.2	-	10	1236	c.910G>A	c.(910-912)GAA>AAA	p.E304K	SAMD3_uc003qbx.2_Missense_Mutation_p.E304K|SAMD3_uc003qbw.2_Missense_Mutation_p.E304K	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform	304										ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		TTGTCAATTTCTCTCCAGTCC	0.373													26	37					0	0	1	0	0
EPB41L2	2037	broad.mit.edu	37	6	131206240	131206240	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr6:131206240C>T	uc003qch.2	-	12	2011	c.1829G>A	c.(1828-1830)GGA>GAA	p.G610E	EPB41L2_uc003qce.1_5'Flank|EPB41L2_uc003qcf.1_5'Flank|EPB41L2_uc003qcg.1_Missense_Mutation_p.G610E|EPB41L2_uc011eby.1_Missense_Mutation_p.G610E|EPB41L2_uc003qci.2_Missense_Mutation_p.G610E|EPB41L2_uc010kfk.2_Missense_Mutation_p.G610E|EPB41L2_uc010kfl.1_Missense_Mutation_p.G610E	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	610	Hydrophilic.				cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		CCATACCTTTCCTTCAATGAG	0.408											OREG0017660	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	52	41					0	0	1	0	0
SERAC1	84947	broad.mit.edu	37	6	158549154	158549154	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr6:158549154G>A	uc003qrc.2	-	10	1143	c.1001C>T	c.(1000-1002)TCT>TTT	p.S334F	SERAC1_uc003qrb.2_Missense_Mutation_p.S62F	NM_032861	NP_116250	Q96JX3	SRAC1_HUMAN	serine active site containing 1	334					GPI anchor metabolic process|intracellular protein transport	integral to membrane|intrinsic to endoplasmic reticulum membrane	binding|hydrolase activity, acting on ester bonds				0		Breast(66;0.00519)|Ovarian(120;0.123)|Prostate(117;0.178)		OV - Ovarian serous cystadenocarcinoma(65;1.37e-18)|BRCA - Breast invasive adenocarcinoma(81;3.19e-05)		GCGAACTATAGAAGAATGAAG	0.353													14	54					0	0	1	0	0
THBS2	7058	broad.mit.edu	37	6	169648776	169648776	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr6:169648776G>A	uc003qwt.2	-	4	593	c.345C>T	c.(343-345)ATC>ATT	p.I115I		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	115	TSP N-terminal.|Heparin-binding (Potential).				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		CGTTGGAGACGATCTCGAACT	0.657													28	38					0	0	1	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31144519	31144519	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:31144519G>A	uc003tca.1	+	15	1437	c.1214G>A	c.(1213-1215)GGT>GAT	p.G405D	ADCYAP1R1_uc003tcb.1_Missense_Mutation_p.G384D|ADCYAP1R1_uc003tcc.1_Missense_Mutation_p.G433D|ADCYAP1R1_uc003tcd.1_Missense_Mutation_p.G433D|ADCYAP1R1_uc003tce.1_Missense_Mutation_p.G432D|uc003tcg.2_5'Flank	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	405	Helical; Name=7; (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						TTTCTGAATGGTGAGGTAAGA	0.522													102	205					0	0	1	0	0
DPY19L1	23333	broad.mit.edu	37	7	35013211	35013211	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:35013211G>A	uc003tem.3	-	8	755	c.610C>T	c.(610-612)CGT>TGT	p.R204C		NM_015283	NP_056098	Q2PZI1	D19L1_HUMAN	dpy-19-like 1	204	Helical; (Potential).					integral to membrane					0						CACATTACACGGGTACACTGA	0.299													5	32					0	0	1	0	0
HERPUD2	64224	broad.mit.edu	37	7	35707199	35707199	+	Splice_Site	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:35707199C>T	uc003tet.2	-	4	1145	c.340_splice	c.e4-1	p.S114_splice	HERPUD2_uc003tes.3_Splice_Site_p.S114_splice	NM_022373	NP_071768	Q9BSE4	HERP2_HUMAN	HERPUD family member 2						response to unfolded protein	integral to membrane				ovary(3)	3						GATCTGAACTCTACAAATAAA	0.358													6	72					0	0	1	0	0
ELMO1	9844	broad.mit.edu	37	7	37298927	37298927	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:37298927C>T	uc003tfk.1	-	6	579	c.272G>A	c.(271-273)CGA>CAA	p.R91Q	ELMO1_uc011kbc.1_5'UTR|ELMO1_uc010kxg.1_Missense_Mutation_p.R91Q	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	91					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						GGACTGGATTCGTTCATGGAG	0.502													32	54					0	0	1	0	0
C7orf36	57002	broad.mit.edu	37	7	39611933	39611933	+	Silent	SNP	A	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:39611933A>T	uc003thc.3	+	3	318	c.309A>T	c.(307-309)ATA>ATT	p.I103I		NM_020192	NP_064577	Q9NRH1	CG036_HUMAN	hypothetical protein LOC57002	103											0						TCAATAAAATAAACAATCTTC	0.368													9	51					0	0	1	0	0
INHBA	3624	broad.mit.edu	37	7	41729807	41729807	+	Missense_Mutation	SNP	C	G	G			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:41729807C>G	uc003thq.2	-	2	957	c.722G>C	c.(721-723)CGG>CCG	p.R241P	INHBA_uc003thr.2_Missense_Mutation_p.R241P	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	241					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						ACAGGCAATCCGAACGTCCAG	0.458										TSP Lung(11;0.080)			4	59					0	0	1	0	0
NUDCD3	23386	broad.mit.edu	37	7	44524593	44524593	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:44524593G>A	uc003tkz.2	-	2	669	c.483C>T	c.(481-483)GTC>GTT	p.V161V		NM_015332	NP_056147	Q8IVD9	NUDC3_HUMAN	NudC domain containing 3	161											0						GTTCCCTAGGGACTTCAGCAG	0.498													11	36					0	0	1	0	0
NPC1L1	29881	broad.mit.edu	37	7	44575925	44575925	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:44575925G>A	uc003tlb.2	-	4	1840	c.1784C>T	c.(1783-1785)GCC>GTC	p.A595V	NPC1L1_uc003tlc.2_Missense_Mutation_p.A595V|NPC1L1_uc011kbw.1_Missense_Mutation_p.A595V|NPC1L1_uc003tld.2_Missense_Mutation_p.A595V	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	595	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	CTCTAAGAAGGCCTCCTCCCA	0.612													21	99					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48318349	48318349	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:48318349G>A	uc003toq.2	+	18	7583	c.7558G>A	c.(7558-7560)GAC>AAC	p.D2520N	ABCA13_uc010kys.1_5'Flank	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	2520					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CACATCAATGGACTCCATTGT	0.428													85	173					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48375094	48375094	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:48375094C>T	uc003toq.2	+	28	10100	c.10075C>T	c.(10075-10077)CAG>TAG	p.Q3359*	ABCA13_uc010kys.1_Nonsense_Mutation_p.Q433*|ABCA13_uc003tos.1_Nonsense_Mutation_p.Q185*	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	3359					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CAGCCTTTTCCAGAGAAGTGG	0.453													22	39					0	0	1	0	0
ELN	2006	broad.mit.edu	37	7	73474245	73474245	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:73474245G>A	uc003tzw.2	+	23	1553	c.1462G>A	c.(1462-1464)GGA>AGA	p.G488R	RFC2_uc011kfa.1_Intron|ELN_uc003tzn.2_Missense_Mutation_p.G482R|ELN_uc003tzz.2_Missense_Mutation_p.G401R|ELN_uc003tzo.2_Missense_Mutation_p.G449R|ELN_uc003tzp.2_Missense_Mutation_p.G393R|ELN_uc003tzq.2_Missense_Mutation_p.G346R|ELN_uc003tzr.2_Intron|ELN_uc003tzs.2_Missense_Mutation_p.G463R|ELN_uc003tzt.2_Missense_Mutation_p.G487R|ELN_uc003tzu.2_Missense_Mutation_p.G468R|ELN_uc003tzv.2_Missense_Mutation_p.G453R|ELN_uc003tzx.2_Missense_Mutation_p.G472R|ELN_uc011kff.1_Missense_Mutation_p.G482R|ELN_uc003tzy.2_Missense_Mutation_p.G458R	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	511	Ala-rich.				blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	CGTGGCTCCTGGAGTTGGCGT	0.493			T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						79	208					0	0	1	0	0
MAGI2	9863	broad.mit.edu	37	7	78130913	78130913	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:78130913C>T	uc003ugx.2	-	5	1200	c.946G>A	c.(946-948)GGC>AGC	p.G316S	MAGI2_uc003ugy.2_Missense_Mutation_p.G316S|MAGI2_uc011kgr.1_Missense_Mutation_p.G148S|MAGI2_uc011kgs.1_Missense_Mutation_p.G153S	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	316	WW 1.|Interaction with DDN.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				TAGACTTCGCCCTTCTCTGTA	0.433													32	59					0	0	1	0	0
CACNA2D1	781	broad.mit.edu	37	7	81598265	81598265	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:81598265G>A	uc003uhr.1	-	29	2589	c.2333C>T	c.(2332-2334)TCG>TTG	p.S778L	CACNA2D1_uc011kgy.1_Intron	NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	790	Extracellular (Potential).					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	CATAATGCCCGATTCATAGGC	0.279													18	120					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82508686	82508686	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:82508686C>T	uc003uhx.2	-	10	13910	c.13621G>A	c.(13621-13623)GGA>AGA	p.G4541R	PCLO_uc003uhv.2_Missense_Mutation_p.G4541R|PCLO_uc003uht.1_5'UTR|PCLO_uc003uhu.1_5'UTR	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCCGCACTTCCCCCAGGAAGA	0.358													9	27					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86479772	86479772	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:86479772C>T	uc003uid.2	+	5	3577	c.2478C>T	c.(2476-2478)ATC>ATT	p.I826I	GRM3_uc010lef.2_Missense_Mutation_p.P469S|GRM3_uc010leg.2_Silent_p.I698I|GRM3_uc010leh.2_Silent_p.I418I	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	826	Helical; Name=7; (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TTCACATCATCCTGTTTCAAC	0.488													13	63					0	0	1	0	0
AKAP9	10142	broad.mit.edu	37	7	91709152	91709152	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:91709152A>G	uc003ulg.2	+	31	7930	c.7705A>G	c.(7705-7707)AAA>GAA	p.K2569E	AKAP9_uc003ulf.2_Missense_Mutation_p.K2561E|AKAP9_uc003uli.2_Missense_Mutation_p.K2192E|AKAP9_uc003ulj.2_Missense_Mutation_p.K339E	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	2581	Glu-rich.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			GGAATATGCAAAATTCTGTCA	0.343			T	BRAF	papillary thyroid								24	44					0	0	1	0	0
CYP3A4	1576	broad.mit.edu	37	7	99367406	99367406	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:99367406G>A	uc003urv.1	-	6	610	c.506C>T	c.(505-507)CCT>CTT	p.P169L	CYP3A4_uc003urw.1_Missense_Mutation_p.P169L|CYP3A4_uc011kiz.1_Missense_Mutation_p.P128L|CYP3A4_uc011kja.1_Missense_Mutation_p.P120L|CYP3A4_uc011kjb.1_Intron	NM_017460	NP_059488	P08684	CP3A4_HUMAN	cytochrome P450, family 3, subfamily A,	169					alkaloid catabolic process|androgen metabolic process|exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid catabolic process|xenobiotic metabolic process	cell surface|endoplasmic reticulum membrane|integral to membrane|microsome	albendazole monooxygenase activity|caffeine oxidase activity|electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding|quinine 3-monooxygenase activity|steroid binding|taurochenodeoxycholate 6alpha-hydroxylase activity|testosterone 6-beta-hydroxylase activity|vitamin D 24-hydroxylase activity|vitamin D3 25-hydroxylase activity			central_nervous_system(3)|ovary(1)	4	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)				Albendazole(DB00518)|Alclometasone(DB00240)|Alfentanil(DB00802)|Alfuzosin(DB00346)|Aliskiren(DB01258)|Almotriptan(DB00918)|Alosetron(DB00969)|Alprazolam(DB00404)|Amlodipine(DB00381)|Amprenavir(DB00701)|Aprepitant(DB00673)|Aripiprazole(DB01238)|Astemizole(DB00637)|Atazanavir(DB01072)|Atorvastatin(DB01076)|Benazepril(DB00542)|Bepridil(DB01244)|Betamethasone(DB00443)|Bexarotene(DB00307)|Bortezomib(DB00188)|Bosentan(DB00559)|Bromocriptine(DB01200)|Budesonide(DB01222)|Bupivacaine(DB00297)|Buprenorphine(DB00921)|Buspirone(DB00490)|Busulfan(DB01008)|Carbamazepine(DB00564)|Cevimeline(DB00185)|Chlorpheniramine(DB01114)|Ciclesonide(DB01410)|Cilostazol(DB01166)|Cinacalcet(DB01012)|Cisapride(DB00604)|Clarithromycin(DB01211)|Clindamycin(DB01190)|Clofibrate(DB00636)|Clonazepam(DB01068)|Clopidogrel(DB00758)|Cocaine(DB00907)|Conivaptan(DB00872)|Conjugated Estrogens(DB00286)|Cyproterone(DB04839)|Darifenacin(DB00496)|Darunavir(DB01264)|Dasatinib(DB01254)|Delavirdine(DB00705)|Desogestrel(DB00304)|Dexamethasone(DB01234)|Diazepam(DB00829)|Dihydroergotamine(DB00320)|Diltiazem(DB00343)|Diphenhydramine(DB01075)|Disopyramide(DB00280)|Dofetilide(DB00204)|Dolasetron(DB00757)|Domperidone(DB01184)|Donepezil(DB00843)|Doxorubicin(DB00997)|Drospirenone(DB01395)|Dutasteride(DB01126)|Efavirenz(DB00625)|Eletriptan(DB00216)|Enalapril(DB00584)|Epirubicin(DB00445)|Eplerenone(DB00700)|Ergotamine(DB00696)|Erlotinib(DB00530)|Erythromycin(DB00199)|Escitalopram(DB01175)|Esomeprazole(DB00736)|Estazolam(DB01215)|Eszopiclone(DB00402)|Ethinyl Estradiol(DB00977)|Ethosuximide(DB00593)|Etonogestrel(DB00294)|Etoposide(DB00773)|Etoricoxib(DB01628)|Exemestane(DB00990)|Felodipine(DB01023)|Fentanyl(DB00813)|Fexofenadine(DB00950)|Finasteride(DB01216)|Fluconazole(DB00196)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Fosamprenavir(DB01319)|Fulvestrant(DB00947)|Galantamine(DB00674)|Gefitinib(DB00317)|Gemfibrozil(DB01241)|Granisetron(DB00889)|Grepafloxacin(DB00365)|Halofantrine(DB01218)|Hydrocodone(DB00956)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Hydromorphone(DB00327)|Imatinib(DB00619)|Indinavir(DB00224)|Ipratropium(DB00332)|Irinotecan(DB00762)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Isradipine(DB00270)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lercanidipine(DB00528)|Letrozole(DB01006)|Levobupivacaine(DB01002)|Levomethadyl Acetate(DB01227)|Levothyroxine(DB00451)|Lomustine(DB01206)|Loperamide(DB00836)|Lopinavir(DB01601)|Loratadine(DB00455)|Losartan(DB00678)|Lovastatin(DB00227)|Maraviroc(DB04835)|Marinol(DB00470)|Mebendazole(DB00643)|Medroxyprogesterone(DB00603)|Methadone(DB00333)|Methylprednisolone(DB00959)|Metyrapone(DB01011)|Mibefradil(DB01388)|Midazolam(DB00683)|Mifepristone(DB00834)|Mirtazapine(DB00370)|Modafinil(DB00745)|Mometasone(DB00764)|Montelukast(DB00471)|Nateglinide(DB00731)|Nefazodone(DB01149)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicardipine(DB00622)|Nifedipine(DB01115)|Nimodipine(DB00393)|Nisoldipine(DB00401)|Nitrendipine(DB01054)|Norethindrone(DB00717)|Norgestrel(DB00506)|Nystatin(DB00646)|Ondansetron(DB00904)|Oxybutynin(DB01062)|Paclitaxel(DB01229)|Paliperidone(DB01267)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Paricalcitol(DB00910)|Phenmetrazine(DB00830)|Pimecrolimus(DB00337)|Pimozide(DB01100)|Pioglitazone(DB01132)|Posaconazole(DB01263)|Pranlukast(DB01411)|Prednisolone(DB00860)|Prednisone(DB00635)|Prochlorperazine(DB00433)|Quetiapine(DB01224)|Quinapril(DB00881)|Quinine(DB00468)|Rabeprazole(DB01129)|Ranolazine(DB00243)|Reboxetine(DB00234)|Retapamulin(DB01256)|Rifabutin(DB00615)|Rifampin(DB01045)|Rimonabant(DB06155)|Ritonavir(DB00503)|Rofecoxib(DB00533)|Roxithromycin(DB00778)|Salmeterol(DB00938)|Saquinavir(DB01232)|Sertindole(DB06144)|Sibutramine(DB01105)|Simvastatin(DB00641)|Sirolimus(DB00877)|Sitagliptin(DB01261)|Solifenacin(DB01591)|Sorafenib(DB00398)|Sunitinib(DB01268)|Tacrolimus(DB00864)|Tadalafil(DB00820)|Tamoxifen(DB00675)|Telithromycin(DB00976)|Terconazole(DB00251)|Terfenadine(DB00342)|Testosterone(DB00624)|Tiagabine(DB00906)|Ticlopidine(DB00208)|Tinidazole(DB00911)|Tiotropium(DB01409)|Tipranavir(DB00932)|Toremifene(DB00539)|Triazolam(DB00897)|Trimetrexate(DB01157)|Troglitazone(DB00197)|Valdecoxib(DB00580)|Vardenafil(DB00862)|Vinblastine(DB00570)|Vincristine(DB00541)|Vindesine(DB00309)|Vinorelbine(DB00361)|Voriconazole(DB00582)|Zaleplon(DB00962)|Zileuton(DB00744)|Ziprasidone(DB00246)|Zolpidem(DB00425)|Zonisamide(DB00909)	CAAGGTGACAGGCTTGCCTGT	0.522													12	130					0	0	1	0	0
ACTL6B	51412	broad.mit.edu	37	7	100244235	100244235	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:100244235T>C	uc003uvy.2	-	12	1159	c.1052A>G	c.(1051-1053)AAC>AGC	p.N351S	ACTL6B_uc003uvx.1_Missense_Mutation_p.N142S|ACTL6B_uc003uvz.2_RNA	NM_016188	NP_057272	O94805	ACL6B_HUMAN	actin-like 6B	351					chromatin modification|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nBAF complex|SWI/SNF complex	ATP binding|protein binding|structural constituent of cytoskeleton			ovary(1)	1	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					CAGCAGTGTGTTCCCGCCGGT	0.652													8	48					0	0	1	0	0
ACTL6B	51412	broad.mit.edu	37	7	100244640	100244640	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:100244640T>C	uc003uvy.2	-	10	997	c.890A>G	c.(889-891)GAG>GGG	p.E297G	ACTL6B_uc003uvx.1_Missense_Mutation_p.E88G|ACTL6B_uc003uvz.2_RNA	NM_016188	NP_057272	O94805	ACL6B_HUMAN	actin-like 6B	297					chromatin modification|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nBAF complex|SWI/SNF complex	ATP binding|protein binding|structural constituent of cytoskeleton			ovary(1)	1	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					GCGGAGTCGCTCGGCGCCGTA	0.612													13	64					0	0	1	0	0
MOGAT3	346606	broad.mit.edu	37	7	100839262	100839262	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:100839262C>T	uc003uyc.2	-	7	1158	c.991G>A	c.(991-993)GGG>AGG	p.G331R	MOGAT3_uc010lhr.2_Nonsense_Mutation_p.W263*	NM_178176	NP_835470	Q86VF5	MOGT3_HUMAN	monoacylglycerol O-acyltransferase 3	331					glycerol metabolic process|lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity|diacylglycerol O-acyltransferase activity			ovary(2)	2	Lung NSC(181;0.168)|all_lung(186;0.215)					GCGGGGACCCCACAGCTTTCC	0.642													24	72					0	0	1	0	0
EIF3IP1	442720	broad.mit.edu	37	7	109599922	109599922	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:109599922G>C	uc003vfp.1	-	1	349	c.176C>G	c.(175-177)ACG>AGG	p.T59R		NR_003024				Homo sapiens eukaryotic translation initiation factor 3, subunit I pseudogene 1 (EIF3IP1), non-coding RNA.												0						CATGGAGAACGTGATGATATT	0.473													11	10					0	0	1	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518303	113518303	+	Silent	SNP	C	T	T	rs150965727		TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:113518303C>T	uc010ljy.1	-	4	2875	c.2844G>A	c.(2842-2844)ACG>ACA	p.T948T		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	948					glycogen metabolic process	integral to membrane		p.T948T(3)		lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TTTCTGATTTCGTAGAAATAG	0.378													14	77					0	0	1	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113558462	113558462	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:113558462G>A	uc010ljy.1	-	1	621	c.590C>T	c.(589-591)CCT>CTT	p.P197L		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	197	CBM21.				glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TTTTTGATAAGGAGGAACCAA	0.333													16	66					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117250629	117250629	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:117250629C>T	uc003vjd.2	+	19	3177	c.3045C>T	c.(3043-3045)ATC>ATT	p.I1015I	CFTR_uc011knq.1_Silent_p.I421I	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	1015	Helical; Name=10; (Potential).|ABC transmembrane type-1 2.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	AACCCTACATCTTTGTTGCAA	0.373									Cystic_Fibrosis				27	49					0	0	1	0	0
ANKRD7	56311	broad.mit.edu	37	7	117874828	117874828	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:117874828T>C	uc003vji.2	+	3	541	c.368T>C	c.(367-369)ATT>ACT	p.I123T		NM_019644	NP_062618	Q92527	ANKR7_HUMAN	ankyrin repeat domain 7	123					male gonad development						0						CTGAGGGATATTCGTTATAAT	0.373													20	88					0	0	1	0	0
C7orf58	79974	broad.mit.edu	37	7	120911478	120911478	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:120911478C>T	uc003vjq.3	+	22	3309	c.2862C>T	c.(2860-2862)TTC>TTT	p.F954F		NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	954						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					GATGTCATTTCCATGAGGTAT	0.338													10	117					0	0	1	0	0
MIR490	574443	broad.mit.edu	37	7	136588004	136588004	+	RNA	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:136588004C>T	hsa-mir-490|MI0003125	+			c.91C>T			CHRM2_uc003vtf.1_Intron|CHRM2_uc003vtg.1_Intron|CHRM2_uc003vtj.1_Intron|CHRM2_uc003vtk.1_Intron|CHRM2_uc003vtl.1_Intron|CHRM2_uc003vtm.1_Intron|CHRM2_uc003vti.1_Intron|CHRM2_uc003vto.1_Intron|CHRM2_uc003vtn.1_Intron|uc003vtp.1_Intron																	0						TGGAGGACTCCATGCTGTTGA	0.463													46	65					0	0	1	0	0
SLC37A3	84255	broad.mit.edu	37	7	140045754	140045754	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:140045754G>A	uc003vvo.2	-	11	1207	c.1041C>T	c.(1039-1041)GGC>GGT	p.G347G	SLC37A3_uc003vvn.2_5'Flank|SLC37A3_uc003vvp.2_Intron|SLC37A3_uc010lnh.2_Silent_p.G347G	NM_207113	NP_996996	Q8NCC5	SPX3_HUMAN	solute carrier family 37 (glycerol-3-phosphate	347	Helical; (Potential).				carbohydrate transport|transmembrane transport	integral to membrane				ovary(3)	3	Melanoma(164;0.0142)					CAGAGATGAAGCCTTGCAAAG	0.498													18	76					0	0	1	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				27	47					0	0	1	0	0
WEE2	494551	broad.mit.edu	37	7	141408896	141408896	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:141408896C>T	uc003vwn.2	+	1	744	c.338C>T	c.(337-339)CCC>CTC	p.P113L	FLJ40852_uc011krh.1_Intron|FLJ40852_uc010lnm.2_Intron|FLJ40852_uc010lnn.2_Intron|FLJ40852_uc003vwm.3_Intron|FLJ40852_uc010lno.2_Intron	NM_001105558	NP_001099028	P0C1S8	WEE2_HUMAN	WEE1 homolog 2	113					egg activation|female meiosis|female pronucleus assembly|meiotic metaphase II|meiotic prophase I|mitosis|negative regulation of oocyte development|regulation of meiosis I	centrosome|nucleus	ATP binding|magnesium ion binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2	Melanoma(164;0.0171)					CCCTCTACTCCCAAAGTAAGT	0.522													26	102					0	0	1	0	0
C7orf34	135927	broad.mit.edu	37	7	142637533	142637533	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:142637533G>A	uc003wca.2	+	2	344	c.303G>A	c.(301-303)CAG>CAA	p.Q101Q		NM_178829	NP_849151	Q96L11	CG034_HUMAN	hypothetical protein LOC135927	76						extracellular region					0	Melanoma(164;0.059)					AAGAAGACCAGTCGTCCAAGA	0.542													33	108					0	0	1	0	0
EPHA1	2041	broad.mit.edu	37	7	143098546	143098546	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:143098546G>A	uc003wcz.2	-	3	390	c.303C>T	c.(301-303)TTC>TTT	p.F101F		NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	101	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				CCCGCACGGTGAACTGCAGCT	0.612													80	184					0	0	1	0	0
OR2A2	442361	broad.mit.edu	37	7	143807096	143807096	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:143807096A>T	uc011ktz.1	+	1	421	c.421A>T	c.(421-423)ACG>TCG	p.T141S		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	141	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					GAGAGTGTGCACGATCCTGGT	0.517													41	115					0	0	1	0	0
ACCN3	9311	broad.mit.edu	37	7	150747973	150747973	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:150747973G>A	uc003win.2	+	4	1310	c.942G>A	c.(940-942)GGG>GGA	p.G314G	ACCN3_uc003wio.2_Silent_p.G314G|ACCN3_uc003wip.2_Silent_p.G314G|ACCN3_uc003wiq.2_RNA	NM_004769	NP_004760	Q9UHC3	ACCN3_HUMAN	amiloride-sensitive cation channel 3 isoform a	314	Extracellular (Potential).				sensory perception|signal transduction	cytoplasm|integral to plasma membrane	ligand-gated sodium channel activity			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCCTTATGGGGTGTCGCCTGG	0.542													20	37					0	0	1	0	0
SHH	6469	broad.mit.edu	37	7	155598993	155598993	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr7:155598993C>T	uc003wmk.1	-	2	710	c.559G>A	c.(559-561)GCA>ACA	p.A187T	SHH_uc003wmh.1_RNA|SHH_uc003wmi.1_Missense_Mutation_p.A100T|SHH_uc003wmj.1_Missense_Mutation_p.A100T	NM_000193	NP_000184	Q15465	SHH_HUMAN	sonic hedgehog preproprotein	187					androgen metabolic process|axon guidance|branching involved in ureteric bud morphogenesis|CD4-positive or CD8-positive, alpha-beta T cell lineage commitment|embryonic digit morphogenesis|hindbrain development|intein-mediated protein splicing|lymphoid progenitor cell differentiation|metanephric mesenchymal cell proliferation involved in metanephros development|midbrain development|negative regulation of cell migration|negative regulation of kidney smooth muscle cell differentiation|negative regulation of ureter smooth muscle cell differentiation|negative thymic T cell selection|neural crest cell migration|neuroblast proliferation|patterning of blood vessels|positive regulation of alpha-beta T cell differentiation|positive regulation of immature T cell proliferation in thymus|positive regulation of kidney smooth muscle cell differentiation|positive regulation of mesenchymal cell proliferation involved in ureter development|positive regulation of T cell differentiation in thymus|positive regulation of ureter smooth muscle cell differentiation|positive thymic T cell selection|proteolysis|sclerotome development|stem cell development|thymus development|vasculogenesis|ventral midline development	cell surface|extracellular space|membrane raft|plasma membrane	calcium ion binding|laminin-1 binding|peptidase activity|signal transducer activity|zinc ion binding			central_nervous_system(3)|lung(1)	4	all_neural(206;0.101)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00882)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGCTTACCTGCTTTCACCGAG	0.627													20	100					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2806857	2806857	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:2806857C>A	uc011kwk.1	-	68	10759	c.10369G>T	c.(10369-10371)GGA>TGA	p.G3457*	CSMD1_uc011kwj.1_Nonsense_Mutation_p.G2771*|CSMD1_uc010lrg.2_Nonsense_Mutation_p.G1348*	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3457	Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AAGTCTTTTCCATGAATGTCA	0.338													4	34					0.00024832	0.000249478	1	1	0
DEFA4	1669	broad.mit.edu	37	8	6794410	6794410	+	Silent	SNP	G	A	A	rs61749084	byFrequency	TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:6794410G>A	uc003wqu.1	-	2	63	c.12C>T	c.(10-12)ATC>ATT	p.I4I		NM_001925	NP_001916	P12838	DEF4_HUMAN	defensin, alpha 4 preproprotein	4					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space				large_intestine(1)	1				COAD - Colon adenocarcinoma(149;0.0572)|READ - Rectum adenocarcinoma(644;0.121)		CGAGGAGGGCGATAATCCTCA	0.622													5	30					0	0	1	0	0
SGK223	157285	broad.mit.edu	37	8	8176651	8176651	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:8176651G>A	uc003wsh.3	-	5	3234	c.3234C>T	c.(3232-3234)CCC>CCT	p.P1078P		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	1078	Protein kinase.						ATP binding|non-membrane spanning protein tyrosine kinase activity				0						CCTGGGCAGGGGGGTGTGTGG	0.706													43	73					0	0	1	0	0
MFHAS1	9258	broad.mit.edu	37	8	8749494	8749494	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:8749494C>T	uc003wsj.1	-	1	1638	c.1075G>A	c.(1075-1077)GAC>AAC	p.D359N		NM_004225	NP_004216	Q9Y4C4	MFHA1_HUMAN	malignant fibrous histiocytoma amplified	359	LRR 13.										0		Hepatocellular(245;0.217)		COAD - Colon adenocarcinoma(149;0.124)		CCAAAGTGGTCGGGCAGCACC	0.612													24	70					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10467416	10467416	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:10467416C>T	uc003wtc.2	-	4	4421	c.4192G>A	c.(4192-4194)GGA>AGA	p.G1398R		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1398					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TCTGGAAGTCCTTCCTCTTTG	0.547													161	429					0	0	1	0	0
MTUS1	57509	broad.mit.edu	37	8	17611986	17611986	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:17611986G>A	uc003wxv.2	-	2	1805	c.1331C>T	c.(1330-1332)CCG>CTG	p.P444L	MTUS1_uc010lsy.2_RNA|MTUS1_uc003wxw.2_Missense_Mutation_p.P444L|MTUS1_uc010lsz.2_Missense_Mutation_p.P444L	NM_001001924	NP_001001924	Q9ULD2	MTUS1_HUMAN	mitochondrial tumor suppressor 1 isoform 1	444						Golgi apparatus|microtubule|microtubule organizing center|mitochondrion|nucleus|plasma membrane|spindle				ovary(1)|skin(1)	2				Colorectal(111;0.0778)		CGCTTCAATCGGTGAAACAGA	0.448													45	141					0	0	1	0	0
TNFRSF10D	8793	broad.mit.edu	37	8	23002101	23002101	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:23002101C>T	uc003xcz.1	-	7	908	c.816G>A	c.(814-816)GAG>GAA	p.E272E		NM_003840	NP_003831	Q9UBN6	TR10D_HUMAN	tumor necrosis factor receptor superfamily,	272	Cytoplasmic (Potential).				anti-apoptosis|apoptosis	integral to membrane	TRAIL binding|transmembrane receptor activity				0		Prostate(55;0.0421)|Breast(100;0.067)		Colorectal(74;0.0147)|COAD - Colon adenocarcinoma(73;0.0612)		GGGCATTGTCCTCCGCCCCAG	0.587													29	46					0	0	1	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24259437	24259437	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:24259437C>T	uc003xdz.2	+	12	1372	c.1152C>T	c.(1150-1152)TTC>TTT	p.F384F	ADAMDEC1_uc010lub.2_Silent_p.F305F|ADAMDEC1_uc011lab.1_Silent_p.F305F	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	384	Peptidase M12B.				integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		GTTCAAAATTCCCAAAGGATT	0.363													5	49					0	0	1	0	0
EXTL3	2137	broad.mit.edu	37	8	28574334	28574334	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:28574334C>T	uc003xgz.1	+	3	1351	c.758C>T	c.(757-759)CCT>CTT	p.P253L		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	253	Lumenal (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		GTGCTGCGGCCTGCTGAGCTG	0.522													15	57					0	0	1	0	0
Unknown	0	broad.mit.edu	37	8	30210057	30210057	+	Silent	SNP	C	T	T	rs146045069	by1000genomes	TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:30210057C>T	uc003xhz.2	+	1	539	c.534C>T	c.(532-534)ACC>ACT	p.T178T						SubName: Full=Class IVb beta tubulin;																		TGTCTGACACCGTGATCGAGT	0.488													26	30					0	0	1	0	0
RAB11FIP1	80223	broad.mit.edu	37	8	37730676	37730676	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:37730676C>T	uc003xkm.1	-	4	1688	c.1644G>A	c.(1642-1644)GCG>GCA	p.A548A	RAB11FIP1_uc010lvz.1_Intron|RAB11FIP1_uc003xkn.1_Intron|RAB11FIP1_uc003xkl.1_5'UTR|RAB11FIP1_uc003xko.1_5'UTR|RAB11FIP1_uc003xkp.1_Intron	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	548					protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			CTGTGGGTTGCGCCTCTGGAG	0.502													10	54					0	0	1	0	0
IDO1	3620	broad.mit.edu	37	8	39780994	39780994	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:39780994C>T	uc003xnm.2	+	7	658	c.544C>T	c.(544-546)CCT>TCT	p.P182S	IDO1_uc003xnn.2_RNA	NM_002164	NP_002155	P14902	I23O1_HUMAN	indoleamine 2,3-dioxygenase 1	182					female pregnancy|tryptophan catabolic process	cytosol	electron carrier activity|heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			central_nervous_system(2)	2					L-Tryptophan(DB00150)	TTAGGTAATTCCTACTGTATT	0.274													3	18					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55537550	55537550	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:55537550C>T	uc003xsd.1	+	4	1256	c.1108C>T	c.(1108-1110)CCA>TCA	p.P370S	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	370					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GATGAGTTTTCCAGGAAGAAC	0.398													23	47					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55537824	55537824	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:55537824A>T	uc003xsd.1	+	4	1530	c.1382A>T	c.(1381-1383)AAA>ATA	p.K461I	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	461					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AGACAAAAGAAATCTGTGATT	0.423													49	56					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	68942864	68942864	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:68942864G>A	uc003xxv.1	+	6	703	c.676G>A	c.(676-678)GAA>AAA	p.E226K	PREX2_uc003xxu.1_Missense_Mutation_p.E226K|PREX2_uc011lez.1_Missense_Mutation_p.E161K	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	226					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						AGTTTTAGAGGAATGGCAGTC	0.458													14	123					0	0	1	0	0
C8orf34	116328	broad.mit.edu	37	8	69633608	69633608	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:69633608G>A	uc010lyz.2	+	10	1131	c.1082G>A	c.(1081-1083)GGG>GAG	p.G361E	C8orf34_uc003xyb.2_Missense_Mutation_p.G336E	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	361					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			TCCTTGCCTGGGACTGAAGAA	0.289													7	52					0	0	1	0	0
XKR9	389668	broad.mit.edu	37	8	71646267	71646267	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:71646267A>T	uc003xyq.2	+	5	1264	c.730A>T	c.(730-732)ATA>TTA	p.I244L	XKR9_uc010lze.2_Missense_Mutation_p.I244L|XKR9_uc010lzd.2_Missense_Mutation_p.I112L	NM_001011720	NP_001011720	Q5GH70	XKR9_HUMAN	XK, Kell blood group complex subunit-related	244	Helical; (Potential).					integral to membrane				ovary(1)|skin(1)	2	Breast(64;0.0716)		Epithelial(68;0.00301)|all cancers(69;0.0165)|OV - Ovarian serous cystadenocarcinoma(28;0.0524)|BRCA - Breast invasive adenocarcinoma(89;0.166)			GTTAGGTATAATATGGGCATT	0.279													16	65					0	0	1	0	0
EYA1	2138	broad.mit.edu	37	8	72127898	72127898	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:72127898C>T	uc003xys.3	-	14	1713	c.1426G>A	c.(1426-1428)GAC>AAC	p.D476N	EYA1_uc003xyr.3_Missense_Mutation_p.D441N|EYA1_uc003xyt.3_Missense_Mutation_p.D443N|EYA1_uc010lzf.2_Missense_Mutation_p.D403N|EYA1_uc003xyu.2_Missense_Mutation_p.D476N|EYA1_uc011lfe.1_Missense_Mutation_p.D470N|EYA1_uc003xyv.2_Missense_Mutation_p.D354N	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	476					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			AACCAGGAGTCGGTCAGGGCT	0.547													50	48					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73848650	73848650	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:73848650T>A	uc003xzb.2	+	3	1648	c.1060T>A	c.(1060-1062)TTT>ATT	p.F354I		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	354	Helical; Name=Segment S5; (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			CAGCCTGGTATTTTTTGCTGA	0.463													25	220					0	0	1	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885163	88885163	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:88885163C>T	uc003ydz.2	-	1	1134	c.1037G>A	c.(1036-1038)GGC>GAC	p.G346D		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	346	WD 2.									ovary(1)	1						GAGCAGGTGGCCATGACGGAG	0.607													59	48					0	0	1	0	0
MTDH	92140	broad.mit.edu	37	8	98703285	98703285	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:98703285C>T	uc003yhz.2	+	6	1245	c.917C>T	c.(916-918)TCC>TTC	p.S306F	MTDH_uc010mbf.2_RNA	NM_178812	NP_848927	Q86UE4	LYRIC_HUMAN	metadherin	306	Cytoplasmic (Potential).				lipopolysaccharide-mediated signaling pathway|negative regulation of apoptosis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of angiogenesis|positive regulation of autophagy|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of protein kinase B signaling cascade	apical plasma membrane|endoplasmic reticulum membrane|integral to membrane|intercellular canaliculus|nuclear body|nuclear membrane|nucleolus|perinuclear region of cytoplasm|tight junction	NF-kappaB binding|RNA polymerase II transcription factor binding|transcription coactivator activity			liver(1)|central_nervous_system(1)	2	Breast(36;2.56e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.178)			AAGTGGAACTCCGTTTCACCT	0.468													15	74					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106814775	106814775	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:106814775C>T	uc003ymd.2	+	8	2488	c.2465C>T	c.(2464-2466)TCC>TTC	p.S822F	ZFPM2_uc011lhs.1_Missense_Mutation_p.S553F	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	822					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			TCCAGTGTTTCCTGCCTAGAG	0.453													6	6					0	0	1	0	0
SLC30A8	169026	broad.mit.edu	37	8	118159392	118159392	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:118159392G>A	uc003yoh.2	+	2	501	c.271G>A	c.(271-273)GGT>AGT	p.G91S	SLC30A8_uc010mcz.2_Missense_Mutation_p.G42S|SLC30A8_uc011lia.1_Missense_Mutation_p.G42S|SLC30A8_uc003yog.2_Missense_Mutation_p.G42S	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	91	Helical; (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			AGAGGTCGTGGGTGAGTCTTT	0.398													53	44					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121209082	121209082	+	Silent	SNP	C	T	T	rs149492812		TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:121209082C>T	uc003yox.2	+	6	754	c.489C>T	c.(487-489)GTC>GTT	p.V163V	COL14A1_uc003yoy.2_5'UTR|COL14A1_uc010mde.1_5'UTR	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	163	VWFA 1.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			TAATCCTGGTCGATGGTTCAT	0.438													99	98					0	0	1	0	0
MTBP	27085	broad.mit.edu	37	8	121528218	121528218	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:121528218T>A	uc003ypc.1	+	18	2078	c.2033T>A	c.(2032-2034)CTT>CAT	p.L678H		NM_022045	NP_071328	Q96DY7	MTBP_HUMAN	Mdm2, transformed 3T3 cell double minute 2, p53	678	Interaction with MDM2 (By similarity).				cell cycle arrest					skin(2)|ovary(1)	3	Lung NSC(37;5.68e-08)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			TTTTCTGAACTTCAGTCTCGT	0.353													55	55					0	0	1	0	0
DENND3	22898	broad.mit.edu	37	8	142161840	142161840	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:142161840C>T	uc003yvy.2	+	7	1016	c.738C>T	c.(736-738)TTC>TTT	p.F246F	DENND3_uc010mep.2_Silent_p.F259F	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	246	DENN.									ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			AGCACCCCTTCGTGCCCATCC	0.582													41	132					0	0	1	0	0
SLC45A4	57210	broad.mit.edu	37	8	142221765	142221765	+	Missense_Mutation	SNP	G	A	A	rs151336979		TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:142221765G>A	uc003ywd.1	-	8	2481	c.2173C>T	c.(2173-2175)CGT>TGT	p.R725C	SLC45A4_uc003ywc.1_3'UTR|SLC45A4_uc010meq.1_Missense_Mutation_p.S725L	NM_001080431	NP_001073900	Q5BKX6	S45A4_HUMAN	solute carrier family 45, member 4	Error:Variant_position_missing_in_Q5BKX6_after_alignment					transport	integral to membrane				ovary(2)	2	all_cancers(97;1.52e-15)|all_epithelial(106;2.92e-14)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			CCAATGTGACGAGATCTGACA	0.363													9	66					0	0	1	0	0
C8orf73	642475	broad.mit.edu	37	8	144650795	144650795	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:144650795A>T	uc010mff.2	-	10	1615	c.1571T>A	c.(1570-1572)CTG>CAG	p.L524Q	C8orf73_uc010mfg.1_Silent_p.P536P	NM_001100878	NP_001094348	A6NGR9	CH073_HUMAN	hypothetical protein LOC642475	524	Leu-rich.						binding			ovary(1)	1	all_cancers(97;6.49e-11)|all_epithelial(106;4.73e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.014)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.134)|BRCA - Breast invasive adenocarcinoma(115;0.146)			CAGCTTCCGCAgggggccgcg	0.532													2	2					0	0	1	0	0
ARHGAP39	80728	broad.mit.edu	37	8	145773732	145773732	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr8:145773732G>A	uc003zdt.1	-	6	1293	c.738C>T	c.(736-738)TCC>TCT	p.S246S	ARHGAP39_uc011llk.1_Silent_p.S246S|ARHGAP39_uc003zds.1_Silent_p.S246S	NM_025251	NP_079527	Q9C0H5	RHG39_HUMAN	KIAA1688 protein	246	Pro-rich.				axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|nucleus	GTPase activator activity				0						GCTGGCTGCCGGAGGGTCTGC	0.687													24	15					0	0	1	0	0
MPDZ	8777	broad.mit.edu	37	9	13121775	13121775	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:13121775G>A	uc010mia.1	-	37	5251	c.5194C>T	c.(5194-5196)CCG>TCG	p.P1732S	MPDZ_uc003zkx.3_5'Flank|MPDZ_uc003zky.3_Missense_Mutation_p.P266S|MPDZ_uc010mib.2_Missense_Mutation_p.P437S|MPDZ_uc010mhx.2_Missense_Mutation_p.P554S|MPDZ_uc011lmm.1_Missense_Mutation_p.P591S|MPDZ_uc003zkz.3_Missense_Mutation_p.P425S|MPDZ_uc010mhy.2_Missense_Mutation_p.P1732S|MPDZ_uc010mhz.2_Missense_Mutation_p.P1699S|MPDZ_uc011lmn.1_Missense_Mutation_p.P1699S|MPDZ_uc003zlb.3_Missense_Mutation_p.P1732S	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	1732	PDZ 11.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		CCTTTTCCCGGCTTCTTCTGC	0.468													20	25					0	0	1	0	0
IFNA21	3452	broad.mit.edu	37	9	21166559	21166559	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:21166559G>A	uc003zom.2	-	1	101	c.53C>T	c.(52-54)TCC>TTC	p.S18F		NM_002175	NP_002166	P01568	IFN21_HUMAN	interferon, alpha 21 precursor	18					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding			central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(5;1.93e-187)|Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		AGAACAGATGGATTTGTAGCT	0.502													15	65					0	0	1	0	0
LINGO2	158038	broad.mit.edu	37	9	27950360	27950360	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:27950360G>A	uc003zqu.1	-	2	504	c.310C>T	c.(310-312)CTC>TTC	p.L104F	LINGO2_uc010mjf.1_Missense_Mutation_p.L104F|LINGO2_uc003zqv.1_Missense_Mutation_p.L104F	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	104	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		AGGTTAAAGAGATTGTTGAAT	0.458													60	64					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32632525	32632525	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:32632525G>A	uc003zrg.1	-	1	3143	c.3053C>T	c.(3052-3054)TCC>TTC	p.S1018F	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1018					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		ATTTTTCAGGGAAAGGCGACG	0.458													107	131					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32635183	32635183	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:32635183G>A	uc003zrg.1	-	1	485	c.395C>T	c.(394-396)CCC>CTC	p.P132L	uc003zrh.1_Intron	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	132					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		GTGGTAAAGGGGCTGCAAGCT	0.483													63	50					0	0	1	0	0
TMEM2	23670	broad.mit.edu	37	9	74324368	74324368	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:74324368C>T	uc011lsa.1	-	17	3332	c.2792G>A	c.(2791-2793)GGA>GAA	p.G931E	TMEM2_uc010mos.2_Missense_Mutation_p.G868E|TMEM2_uc011lsb.1_RNA	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	931						integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		ACCAGGCTTTCCAAAAAAGAC	0.448													25	35					0	0	1	0	0
TLE1	7088	broad.mit.edu	37	9	84249096	84249096	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:84249096G>A	uc004aly.2	-	7	934	c.493C>T	c.(493-495)CTT>TTT	p.L165F	TLE1_uc004alz.2_Missense_Mutation_p.L175F|TLE1_uc011lsr.1_Missense_Mutation_p.L165F|TLE1_uc004ama.1_Missense_Mutation_p.L165F|TLE1_uc011lss.1_Intron|TLE1_uc004amb.2_Missense_Mutation_p.L165F	NM_005077	NP_005068	Q04724	TLE1_HUMAN	transducin-like enhancer protein 1	165	Gly/Pro-rich.				negative regulation of Wnt receptor signaling pathway|organ morphogenesis|transcription, DNA-dependent|Wnt receptor signaling pathway		transcription factor binding			ovary(1)|skin(1)	2						GACAGCGCAAGAAGGCCGGCA	0.602													4	7					0	0	1	0	0
CTSL1	1514	broad.mit.edu	37	9	90343253	90343253	+	Missense_Mutation	SNP	A	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:90343253A>C	uc004aph.2	+	4	688	c.338A>C	c.(337-339)GAG>GCG	p.E113A	CTSL1_uc004api.2_Missense_Mutation_p.E113A|CTSL1_uc004apj.2_Missense_Mutation_p.E58A|CTSL1_uc010mqh.2_Intron|CTSL1_uc004apk.2_Missense_Mutation_p.E113A|CTSL1_uc004apl.2_Missense_Mutation_p.E113A	NM_001912	NP_001903	P07711	CATL1_HUMAN	cathepsin L1 preproprotein	113					macrophage apoptosis|proteolysis	extracellular region|lysosome|nucleus	cysteine-type endopeptidase activity|histone binding			ovary(3)	3					Glucagon recombinant(DB00040)	CTGTTTTATGAGGCCCCCAGA	0.488													26	52					0	0	1	0	0
ASPN	54829	broad.mit.edu	37	9	95219762	95219762	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:95219762G>A	uc004ase.1	-	8	1195	c.951C>T	c.(949-951)ATC>ATT	p.I317I	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|ASPN_uc010mqy.1_Missense_Mutation_p.L240F	NM_017680	NP_060150	Q9BXN1	ASPN_HUMAN	asporin precursor	317	LRR 9.				bone mineralization|negative regulation of tooth mineralization|negative regulation of transforming growth factor beta receptor signaling pathway	proteinaceous extracellular matrix	calcium ion binding				0						AATGAAGGAAGATTATCTGTT	0.338													5	30					0	0	1	0	0
ZNF367	195828	broad.mit.edu	37	9	99157137	99157137	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:99157137G>A	uc004awf.2	-	3	1014	c.659C>T	c.(658-660)ACC>ATC	p.T220I	ZNF367_uc004awg.2_Missense_Mutation_p.T220I	NM_153695	NP_710162	Q7RTV3	ZN367_HUMAN	zinc finger protein 367	220					regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Acute lymphoblastic leukemia(62;0.0167)				TTTCTCTCCGGTGTGAAGACG	0.398													14	34					0	0	1	0	0
ZNF782	158431	broad.mit.edu	37	9	99581330	99581330	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:99581330G>A	uc004awp.1	-	6	1256	c.975C>T	c.(973-975)CTC>CTT	p.L325L	ZNF782_uc011lup.1_Silent_p.L193L	NM_001001662	NP_001001662	Q6ZMW2	ZN782_HUMAN	zinc finger protein 782	325	C2H2-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Acute lymphoblastic leukemia(62;0.0527)				GATGCACTGGGAGGGTTGAAT	0.398													42	96					0	0	1	0	0
FAM22G	441457	broad.mit.edu	37	9	99691319	99691319	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:99691319G>A	uc004awq.1	+	1	728	c.13G>A	c.(13-15)GGA>AGA	p.G5R		NM_001045477	NP_001038942	Q5VZR2	FA22G_HUMAN	hypothetical protein LOC441457	5										skin(1)	1		Acute lymphoblastic leukemia(62;0.0527)				GGCTTCAAATGGAGGTGAGCC	0.537													16	104					0	0	1	0	0
KIAA1529	57653	broad.mit.edu	37	9	100116928	100116928	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:100116928G>A	uc011lut.1	+	35	4402	c.3629G>A	c.(3628-3630)CGG>CAG	p.R1210Q	KIAA1529_uc004axe.1_Missense_Mutation_p.R1042Q|KIAA1529_uc004axg.1_Missense_Mutation_p.R1071Q|KIAA1529_uc004axh.1_RNA|KIAA1529_uc011luw.1_Missense_Mutation_p.R227Q	NM_020893	NP_065944			hypothetical protein LOC57653											ovary(4)|large_intestine(2)|skin(1)	7		Acute lymphoblastic leukemia(62;0.154)				GAAGCTGCCCGGATAGAGTTG	0.483													30	66					0	0	1	0	0
OR13C2	392376	broad.mit.edu	37	9	107367371	107367371	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:107367371C>T	uc011lvq.1	-	1	538	c.538G>A	c.(538-540)GAA>AAA	p.E180K		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GCCAGAATTTCACAGGTGAAA	0.418													24	132					0	0	1	0	0
FKBP15	23307	broad.mit.edu	37	9	115932877	115932877	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:115932877G>A	uc004bgs.2	-	25	2809	c.2691C>T	c.(2689-2691)TCC>TCT	p.S897S	FKBP15_uc004bgr.2_Silent_p.S334S|FKBP15_uc011lxc.1_Silent_p.S478S|FKBP15_uc011lxd.1_Silent_p.S829S	NM_015258	NP_056073	Q5T1M5	FKB15_HUMAN	FK506 binding protein 15, 133kDa	897					endocytosis|protein folding	axon|early endosome	actin binding			ovary(3)	3						CTCTCCGTAAGGACTGGAACA	0.443													30	96					0	0	1	0	0
TLR4	7099	broad.mit.edu	37	9	120476556	120476556	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:120476556C>T	uc004bjz.2	+	3	2441	c.2150C>T	c.(2149-2151)GCC>GTC	p.A717V	TLR4_uc004bka.2_Missense_Mutation_p.A677V|TLR4_uc004bkb.2_Missense_Mutation_p.A517V	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	717	Cytoplasmic (Potential).|TIR.				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						CCCGGTGTGGCCATTGCTGCC	0.473													30	56					0	0	1	0	0
CEP110	11064	broad.mit.edu	37	9	123907182	123907182	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:123907182G>A	uc004bkx.1	+	19	3144	c.3113G>A	c.(3112-3114)CGA>CAA	p.R1038Q	CEP110_uc004bky.1_Missense_Mutation_p.R642Q|CEP110_uc004bla.1_Missense_Mutation_p.R486Q|CEP110_uc010mvo.1_5'UTR	NM_007018	NP_008949	Q7Z7A1	CNTRL_HUMAN	centrosomal protein 110kDa	1038	Potential.				cell division|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding				0						GATCTCACCCGAGCAGAAGCT	0.527													24	82					0	0	1	0	0
OR1L3	26735	broad.mit.edu	37	9	125437956	125437956	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:125437956C>T	uc011lzb.1	+	1	548	c.548C>T	c.(547-549)CCT>CTT	p.P183L		NM_001005234	NP_001005234	Q8NH93	OR1L3_HUMAN	olfactory receptor, family 1, subfamily L,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GATGTCAACCCTGTGCTGAAA	0.448													21	232					0	0	1	0	0
ZBTB26	57684	broad.mit.edu	37	9	125681359	125681359	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:125681359C>T	uc004bnj.2	-	2	1067	c.855G>A	c.(853-855)CTG>CTA	p.L285L	ZBTB26_uc004bnk.2_Silent_p.L285L	NM_020924	NP_065975	Q9HCK0	ZBT26_HUMAN	zinc finger and BTB domain containing 26	285	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CGTAGTTCTCCAGGTGACGAA	0.473													39	120					0	0	1	0	0
CRAT	1384	broad.mit.edu	37	9	131857859	131857859	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:131857859G>A	uc004bxh.2	-	14	1980	c.1698C>T	c.(1696-1698)TTC>TTT	p.F566F	CRAT_uc004bxg.2_Silent_p.F545F|CRAT_uc004bxk.3_Silent_p.F545F	NM_000755	NP_000746	P43155	CACP_HUMAN	carnitine acetyltransferase precursor	566				F->A: Increases the KM for carnitine 18- fold and reduces enzyme activity 100- fold.|F->Y: No effect.	energy derivation by oxidation of organic compounds|fatty acid beta-oxidation using acyl-CoA oxidase|transport	endoplasmic reticulum|mitochondrial inner membrane|peroxisomal matrix	carnitine O-acetyltransferase activity			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (4;0.0178)	L-Carnitine(DB00583)	CCACGGGCCCGAAGAACATGA	0.607													16	20					0	0	1	0	0
C9orf171	389799	broad.mit.edu	37	9	135447804	135447804	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:135447804G>A	uc004cbn.2	+	7	918	c.870G>A	c.(868-870)ACG>ACA	p.T290T	C9orf171_uc004cbo.2_Silent_p.T254T	NM_207417	NP_997300	Q6ZQR2	CI171_HUMAN	hypothetical protein LOC389799	290										ovary(4)|large_intestine(1)	5						CGTTCCCCACGGAGGCCGATC	0.627													12	75					0	0	1	0	0
ADAMTSL2	9719	broad.mit.edu	37	9	136401925	136401925	+	Splice_Site	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:136401925G>A	uc011mdl.1	+	2	647	c.90_splice	c.e2+1	p.T30_splice	ADAMTSL2_uc004cei.2_Splice_Site_p.T30_splice	NM_001145320	NP_001138792	Q86TH1	ATL2_HUMAN	ADAMTS-like 2 precursor						negative regulation of transforming growth factor beta receptor signaling pathway	proteinaceous extracellular matrix	metalloendopeptidase activity|protein binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;9.31e-08)|Epithelial(140;6.62e-07)|all cancers(34;7.74e-06)		CGGGTCCACGGTGAGTGGGGT	0.607													19	48					0	0	1	0	0
SARDH	1757	broad.mit.edu	37	9	136597576	136597576	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr9:136597576T>C	uc004cep.3	-	3	613	c.479A>G	c.(478-480)CAG>CGG	p.Q160R	SARDH_uc004ceo.2_Missense_Mutation_p.Q160R|SARDH_uc011mdn.1_Missense_Mutation_p.Q160R|SARDH_uc011mdo.1_5'UTR	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	160					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		GTCCAGGCGCTGCCGGTTGGA	0.677													17	186					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3235414	3235414	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:3235414G>A	uc004crg.3	-	6	6465	c.6308C>T	c.(6307-6309)CCC>CTC	p.P2103L		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2103	Ig-like C2-type 5.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CGTCCCGTTGGGGAAAACAAA	0.677													5	21					0	0	1	0	0
NLGN4X	57502	broad.mit.edu	37	X	5821284	5821284	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:5821284C>T	uc010ndh.2	-	5	1936	c.1435G>A	c.(1435-1437)GAA>AAA	p.E479K	NLGN4X_uc004crp.2_Missense_Mutation_p.E499K|NLGN4X_uc004crq.2_Missense_Mutation_p.E479K|NLGN4X_uc010ndi.2_Missense_Mutation_p.E516K|NLGN4X_uc004crr.2_Missense_Mutation_p.E479K|NLGN4X_uc010ndj.2_Missense_Mutation_p.E479K	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	479	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						GGCTTCATTTCGCTTTGGCAG	0.602													24	107					0	0	1	0	0
TLR8	51311	broad.mit.edu	37	X	12937851	12937851	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:12937851A>G	uc004cve.2	+	2	760	c.692A>G	c.(691-693)AAC>AGC	p.N231S	TLR8_uc004cvd.2_Missense_Mutation_p.N249S	NM_138636	NP_619542	Q9NR97	TLR8_HUMAN	toll-like receptor 8 precursor	231	LRR 5.|Extracellular (Potential).				cellular response to mechanical stimulus|defense response to virus|I-kappaB kinase/NF-kappaB cascade|immunoglobulin mediated immune response|inflammatory response|innate immune response|positive regulation of innate immune response|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process	endosome membrane	DNA binding|double-stranded RNA binding|single-stranded RNA binding|transmembrane receptor activity			ovary(4)|lung(2)|large_intestine(1)	7						TTTCTGAGCAACACCCAGATC	0.413													8	163					0	0	1	0	0
FANCB	2187	broad.mit.edu	37	X	14862651	14862651	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:14862651G>A	uc004cwg.1	-	9	2407	c.2139C>T	c.(2137-2139)TTC>TTT	p.F713F	FANCB_uc004cwh.1_Silent_p.F713F	NM_001018113	NP_001018123	Q8NB91	FANCB_HUMAN	Fanconi anemia complementation group B	713					DNA repair	nucleoplasm				lung(1)	1	Hepatocellular(33;0.183)					AAATCCCTTCGAATGGTGTTC	0.368								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				35	76					0	0	1	0	0
NHS	4810	broad.mit.edu	37	X	17744754	17744754	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:17744754G>A	uc004cxx.2	+	6	2803	c.2465G>A	c.(2464-2466)AGG>AAG	p.R822K	NHS_uc011mix.1_Missense_Mutation_p.R843K|NHS_uc004cxy.2_Missense_Mutation_p.R666K|NHS_uc004cxz.2_Missense_Mutation_p.R645K|NHS_uc004cya.2_Missense_Mutation_p.R545K	NM_198270	NP_938011	Q6T4R5	NHS_HUMAN	Nance-Horan syndrome protein isoform 1	822						nucleus				skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	Hepatocellular(33;0.183)					ATCTCTTTCAGGAAACCAAAG	0.498													27	167					0	0	1	0	0
KLHL34	257240	broad.mit.edu	37	X	21675792	21675792	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:21675792C>T	uc004czz.1	-	1	657	c.115G>A	c.(115-117)GAA>AAA	p.E39K		NM_153270	NP_695002	Q8N239	KLH34_HUMAN	kelch-like 34	39	BTB.									ovary(1)	1						GCCGGGAATTCGCTGCCCTCG	0.662													11	19					0	0	1	0	0
PHEX	5251	broad.mit.edu	37	X	22231020	22231020	+	Splice_Site	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:22231020G>A	uc004dah.2	+	16	1849	c.1646_splice	c.e16-1	p.R549_splice	PHEX_uc011mjr.1_Splice_Site_p.R549_splice|PHEX_uc011mjs.1_Splice_Site_p.R452_splice	NM_000444	NP_000435	P78562	PHEX_HUMAN	phosphate-regulating neutral endopeptidase						biomineral tissue development|cell-cell signaling|protein modification process|proteolysis|skeletal system development	integral to plasma membrane	aminopeptidase activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3						CCTTCTCATAGGATTTCCAGC	0.398													29	145					0	0	1	0	0
DDX53	168400	broad.mit.edu	37	X	23019901	23019901	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:23019901C>T	uc004daj.2	+	1	1815	c.1727C>T	c.(1726-1728)TCG>TTG	p.S576L		NM_182699	NP_874358	Q86TM3	DDX53_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 53	576	Helicase C-terminal.					nucleus	ATP binding|ATP-dependent helicase activity|RNA binding			large_intestine(1)|ovary(1)|kidney(1)	3						CAGAGAGATTCGAAAATGGCC	0.413													26	113					0	0	1	0	0
MAGEB16	139604	broad.mit.edu	37	X	35820439	35820439	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:35820439C>T	uc010ngt.1	+	2	405	c.126C>T	c.(124-126)TCC>TCT	p.S42S		NM_001099921	NP_001093391	A2A368	MAGBG_HUMAN	melanoma antigen family B, 16	42										lung(3)|ovary(2)|breast(1)|skin(1)	7						TCTCCTCCTCCCATCCTCTAG	0.552													21	22					0	0	1	0	0
MAGEB16	139604	broad.mit.edu	37	X	35820627	35820627	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:35820627C>T	uc010ngt.1	+	2	593	c.314C>T	c.(313-315)CCC>CTC	p.P105L		NM_001099921	NP_001093391	A2A368	MAGBG_HUMAN	melanoma antigen family B, 16	105										lung(3)|ovary(2)|breast(1)|skin(1)	7						ACATCAGACCCCAGGAATGTG	0.468													4	38					0	0	1	0	0
CXorf22	170063	broad.mit.edu	37	X	35994009	35994009	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:35994009T>A	uc004ddj.2	+	15	2751	c.2692T>A	c.(2692-2694)TTT>ATT	p.F898I	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	898										large_intestine(1)|lung(1)|ovary(1)	3						AGGGATAGCATTTTCTATTTG	0.294													25	211					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37026933	37026933	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:37026933G>A	uc004ddl.1	+	1	464	c.450G>A	c.(448-450)CTG>CTA	p.L150L		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	150										ovary(3)	3						TACAGGTACTGAAACCGCTGG	0.557													27	76					0	0	1	0	0
MAOA	4128	broad.mit.edu	37	X	43515648	43515648	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:43515648G>A	uc004dfy.2	+	1	240	c.59G>A	c.(58-60)GGA>GAA	p.G20E	MAOA_uc011mkw.1_5'UTR	NM_000240	NP_000231	P21397	AOFA_HUMAN	monoamine oxidase A	20	Cytoplasmic.				behavior|neurotransmitter biosynthetic process|neurotransmitter catabolic process|neurotransmitter secretion|xenobiotic metabolic process	integral to membrane|mitochondrial outer membrane	primary amine oxidase activity|protein binding			breast(2)|ovary(1)	3					Almotriptan(DB00918)|Carbidopa(DB00190)|Clonazepam(DB01068)|Dopamine(DB00988)|Fluvoxamine(DB00176)|Ginkgo biloba(DB01381)|Imipramine(DB00458)|Isocarboxazid(DB01247)|Levodopa(DB01235)|Linezolid(DB00601)|Lorazepam(DB00186)|Moclobemide(DB01171)|Nicotine(DB00184)|Norepinephrine(DB00368)|Phenelzine(DB00780)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Phenylephrine(DB00388)|Phenylpropanolamine(DB00397)|Pseudoephedrine(DB00852)|Rasagiline(DB01367)|Riboflavin(DB00140)|Rizatriptan(DB00953)|Selegiline(DB01037)|Sumatriptan(DB00669)|Testosterone(DB00624)|Tranylcypromine(DB00752)|Zolmitriptan(DB00315)	GTCGTGATCGGAGGTGGCATT	0.602													14	43					0	0	1	0	0
SLC9A7	84679	broad.mit.edu	37	X	46466593	46466593	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:46466593C>T	uc004dgu.1	-	17	1980	c.1972G>A	c.(1972-1974)GAA>AAA	p.E658K		NM_032591	NP_115980	Q96T83	SL9A7_HUMAN	solute carrier family 9, member 7	658					regulation of pH	Golgi membrane|integral to membrane|recycling endosome membrane|trans-Golgi network	potassium:hydrogen antiporter activity|protein homodimerization activity|sodium:hydrogen antiporter activity			ovary(2)	2						AGGTCGCCTTCGGTCAGGATG	0.517													14	36					0	0	1	0	0
UBA1	7317	broad.mit.edu	37	X	47065744	47065744	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:47065744C>T	uc004dhj.3	+	16	1990	c.1839C>T	c.(1837-1839)TTC>TTT	p.F613F	UBA1_uc004dhk.3_Silent_p.F613F|UBA1_uc004dhm.2_5'Flank	NM_153280	NP_695012	P22314	UBA1_HUMAN	ubiquitin-activating enzyme E1	613					cell death|protein modification process		ATP binding|ligase activity|protein binding|small protein activating enzyme activity			ovary(1)	1						TGATCCCCTTCCTGACAGAGT	0.577													14	23					0	0	1	0	0
CCDC22	28952	broad.mit.edu	37	X	49104003	49104003	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:49104003C>T	uc004dnd.1	+	8	1112	c.956C>T	c.(955-957)TCC>TTC	p.S319F	CCDC22_uc004dnc.1_RNA	NM_014008	NP_054727	O60826	CCD22_HUMAN	coiled-coil domain containing 22	319										central_nervous_system(1)	1						CCAGCCACCTCCCGGCGGCCT	0.667													3	11					0	0	1	0	0
FGD1	2245	broad.mit.edu	37	X	54496497	54496497	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:54496497C>T	uc004dtg.2	-	4	1787	c.1053G>A	c.(1051-1053)AAG>AAA	p.K351K	FGD1_uc011moi.1_Silent_p.K109K	NM_004463	NP_004454	P98174	FGD1_HUMAN	faciogenital dysplasia protein	351					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|organ morphogenesis|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|nucleus|plasma membrane|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|skin(2)|central_nervous_system(1)	6						TTTCTCTGtccttctcttcct	0.483													23	18					0	0	1	0	0
ZXDA	7789	broad.mit.edu	37	X	57936125	57936125	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:57936125C>T	uc004dve.2	-	1	943	c.730G>A	c.(730-732)GAG>AAG	p.E244K		NM_007156	NP_009087	P98168	ZXDA_HUMAN	zinc finger, X-linked, duplicated A	244					positive regulation of transcription, DNA-dependent	nucleus	C2H2 zinc finger domain binding|identical protein binding|nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						CCCTCCGCCTCCTCCTGGGGC	0.756													4	12					0	0	1	0	0
ARR3	407	broad.mit.edu	37	X	69489535	69489535	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:69489535A>T	uc004dyb.2	+	3	100	c.32A>T	c.(31-33)AAT>ATT	p.N11I	ARR3_uc004dya.2_Missense_Mutation_p.N11I	NM_004312	NP_004303	P36575	ARRC_HUMAN	arrestin 3, retinal (X-arrestin)	11					signal transduction|visual perception	cytoplasm|soluble fraction				large_intestine(2)|ovary(2)	4						ACCAGCTCCAATGGGAAGGTG	0.527													6	17					0	0	1	0	0
DLG3	1741	broad.mit.edu	37	X	69673525	69673525	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:69673525G>A	uc004dyi.1	+	8	1512	c.1184G>A	c.(1183-1185)GGC>GAC	p.G395D	DLG3_uc004dyj.1_Missense_Mutation_p.G58D|DLG3_uc011mpn.1_5'Flank	NM_021120	NP_066943	Q92796	DLG3_HUMAN	synapse-associated protein 102 isoform a	395	PDZ 3.				axon guidance|negative regulation of cell proliferation|synaptic transmission	plasma membrane	guanylate kinase activity			large_intestine(1)|pancreas(1)	2	Renal(35;0.156)					GGCTCCACAGGCCTGGGCTTC	0.567													8	17					0	0	1	0	0
PIN4	5303	broad.mit.edu	37	X	71417227	71417227	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:71417227G>T	uc004eam.2	+	4	357	c.322G>T	c.(322-324)GGT>TGT	p.G108C	PIN4_uc004eao.1_Intron	NM_006223	NP_006214	Q9Y237	PIN4_HUMAN	protein (peptidyl-prolyl cis/trans isomerase)	83	PpiC.				protein folding|rRNA processing	cytoplasm|mitochondrial matrix|mitochondrial matrix|nucleolus|nucleolus|preribosome|spindle|spindle	bent DNA binding|DNA binding|double-stranded DNA binding|peptidyl-prolyl cis-trans isomerase activity				0	Renal(35;0.156)					GGGTGACTTGGGTTGGATGAC	0.468													7	27					1.06961e-07	1.08984e-07	1	1	0
SLC16A2	6567	broad.mit.edu	37	X	73641371	73641371	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:73641371G>A	uc004ebt.2	+	1	287	c.121G>A	c.(121-123)GGC>AGC	p.G41S		NM_006517	NP_006508	P36021	MOT8_HUMAN	solute carrier family 16, member 2	Error:Variant_position_missing_in_P36021_after_alignment						integral to plasma membrane|membrane fraction	monocarboxylic acid transmembrane transporter activity|symporter activity			breast(2)|ovary(1)	3					Pyruvic acid(DB00119)	cagcggcagcggcagcagcag	0.428													2	5					0	0	1	0	0
SLC16A2	6567	broad.mit.edu	37	X	73749091	73749091	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:73749091C>T	uc004ebt.2	+	5	1602	c.1436C>T	c.(1435-1437)CCC>CTC	p.P479L	SLC16A2_uc010nlr.1_Intron	NM_006517	NP_006508	P36021	MOT8_HUMAN	solute carrier family 16, member 2	405	Helical; (Potential).					integral to plasma membrane|membrane fraction	monocarboxylic acid transmembrane transporter activity|symporter activity			breast(2)|ovary(1)	3					Pyruvic acid(DB00119)	ATGATGATTCCCCTGTGCCGG	0.562													6	51					0	0	1	0	0
P2RY10	27334	broad.mit.edu	37	X	78216833	78216833	+	Silent	SNP	C	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:78216833C>A	uc004ede.2	+	4	1185	c.816C>A	c.(814-816)ACC>ACA	p.T272T	P2RY10_uc004edf.2_Silent_p.T272T	NM_014499	NP_055314	O00398	P2Y10_HUMAN	G-protein coupled purinergic receptor P2Y10	272	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(2)|breast(1)	5						TAAAGGAAACCATCATTAGCA	0.428													45	252					5.20006e-24	5.3811e-24	1	1	0
CYLC1	1538	broad.mit.edu	37	X	83128247	83128247	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:83128247C>T	uc004eei.1	+	4	552	c.531C>T	c.(529-531)TCC>TCT	p.S177S	CYLC1_uc004eeh.1_Silent_p.S176S	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	177					cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						AGTCAAAATCCAGTTCAGAAA	0.313													9	38					0	0	1	0	0
TNMD	64102	broad.mit.edu	37	X	99848959	99848959	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:99848959C>T	uc004efy.3	+	3	474	c.248C>T	c.(247-249)CCT>CTT	p.P83L	TNMD_uc004efz.2_Missense_Mutation_p.P83L	NM_022144	NP_071427	Q9H2S6	TNMD_HUMAN	tenomodulin	83	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1						GAAATTGATCCTGTGACCAGA	0.408													12	85					0	0	1	0	0
SYTL4	94121	broad.mit.edu	37	X	99956599	99956599	+	Missense_Mutation	SNP	G	A	A	rs151147513		TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:99956599G>A	uc004egd.3	-	5	537	c.181C>T	c.(181-183)CGG>TGG	p.R61W	SYTL4_uc010nnc.2_Missense_Mutation_p.R61W|SYTL4_uc004ege.3_Missense_Mutation_p.R61W|SYTL4_uc004egf.3_Missense_Mutation_p.R61W|SYTL4_uc004egg.3_Missense_Mutation_p.R61W	NM_080737	NP_542775	Q96C24	SYTL4_HUMAN	synaptotagmin-like 4	61	RabBD.				exocytosis|intracellular protein transport	extrinsic to membrane|plasma membrane|synaptic vesicle|transport vesicle membrane	neurexin binding|phospholipid binding|Rab GTPase binding|transporter activity|zinc ion binding			ovary(2)	2					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GCACAGGTCCGATCACTGTAG	0.537													46	134					0	0	1	0	0
RAB40AL	282808	broad.mit.edu	37	X	102193023	102193023	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:102193023C>T	uc004ejs.2	+	1	824	c.777C>T	c.(775-777)ATC>ATT	p.I259I		NM_001031834	NP_001027004	P0C0E4	RB40L_HUMAN	RAB40A, member RAS oncogene family-like	259					protein transport|small GTPase mediated signal transduction	mitochondrion|plasma membrane	GTP binding			ovary(2)	2						AAGTGAAGATCGTCTGCCCAC	0.537													45	117					0	0	1	0	0
TBC1D8B	54885	broad.mit.edu	37	X	106070472	106070472	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:106070472C>T	uc004emo.2	+	7	1273	c.1108C>T	c.(1108-1110)CGC>TGC	p.R370C	MORC4_uc004emp.3_Intron|TBC1D8B_uc004emm.2_Missense_Mutation_p.R370C|TBC1D8B_uc004emn.2_Missense_Mutation_p.R370C	NM_017752	NP_060222	Q0IIM8	TBC8B_HUMAN	TBC1 domain family, member 8B (with GRAM domain)	370						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(2)|central_nervous_system(1)|skin(1)	4						AACAGCTTTTCGCTTCCATGA	0.388													33	134					0	0	1	0	0
RGAG1	57529	broad.mit.edu	37	X	109695261	109695261	+	Silent	SNP	T	G	G			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:109695261T>G	uc004eor.1	+	3	1662	c.1416T>G	c.(1414-1416)ACT>ACG	p.T472T	RGAG1_uc011msr.1_Silent_p.T472T	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	472										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						TGGCCAAAACTTCTGGAGCAA	0.512													48	207					0	0	1	0	0
HTR2C	3358	broad.mit.edu	37	X	114141636	114141636	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:114141636C>T	uc004epu.1	+	6	1763	c.1035C>T	c.(1033-1035)CTC>CTT	p.L345L	HTR2C_uc010nqc.1_Silent_p.L345L|HTR2C_uc004epv.1_3'UTR	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	345	Extracellular (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	ACCAAAAGCTCATGGAAAAGC	0.383													85	139					0	0	1	0	0
CXorf61	203413	broad.mit.edu	37	X	115594041	115594041	+	Translation_Start_Site	SNP	C	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:115594041C>A	uc004eqj.1	-	1	97	c.-23G>T	c.(-25--21)AAGGG>AATGG			NM_001017978	NP_001017978	Q5H943	KKLC1_HUMAN	chromosome X open reading frame 61							integral to membrane|plasma membrane					0						CCTCTTCTCCCTTCTCGGGAC	0.537													8	72					0.00307968	0.00309043	1	1	0
KIAA1210	57481	broad.mit.edu	37	X	118220586	118220586	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:118220586G>A	uc004era.3	-	11	4607	c.4607C>T	c.(4606-4608)TCT>TTT	p.S1536F		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	1536										ovary(4)|skin(1)	5						TGCAACGTAAGATATTTTGGT	0.512													36	48					0	0	1	0	0
KIAA1210	57481	broad.mit.edu	37	X	118222028	118222028	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:118222028G>A	uc004era.3	-	11	3165	c.3165C>T	c.(3163-3165)TCC>TCT	p.S1055S		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	1055										ovary(4)|skin(1)	5						CCGAGGGCTGGGAAAGGCATC	0.532													35	176					0	0	1	0	0
KIAA1210	57481	broad.mit.edu	37	X	118223062	118223062	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:118223062C>T	uc004era.3	-	11	2131	c.2131G>A	c.(2131-2133)GAT>AAT	p.D711N		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	711										ovary(4)|skin(1)	5						TTTTGTAAATCAAAGCTGAAA	0.433													13	49					0	0	1	0	0
AKAP14	158798	broad.mit.edu	37	X	119054534	119054534	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:119054534C>T	uc004ese.2	+	7	696	c.558C>T	c.(556-558)TTC>TTT	p.F186F	AKAP14_uc004esf.2_Silent_p.F126F	NM_178813	NP_848928	Q86UN6	AKA28_HUMAN	A kinase (PRKA) anchor protein 14 isoform a	186						cytoplasm					0						AATATAGTTTCATGGAGTCAT	0.353													16	43					0	0	1	0	0
RHOXF1	158800	broad.mit.edu	37	X	119249517	119249517	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:119249517C>T	uc004esk.1	-	1	331	c.256G>A	c.(256-258)GAG>AAG	p.E86K	uc004esi.1_Intron	NM_139282	NP_644811	Q8NHV9	RHXF1_HUMAN	Rhox homeobox family, member 1	86					gamete generation|multicellular organismal development|steroid hormone receptor signaling pathway	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCCGGCTCCTCCGGCGGGGGC	0.692													34	57					0	0	1	0	0
HS6ST2	90161	broad.mit.edu	37	X	132091215	132091215	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:132091215C>T	uc011mve.1	-	3	984	c.568G>A	c.(568-570)GTG>ATG	p.V190M	HS6ST2_uc011mvb.1_Missense_Mutation_p.V44M|HS6ST2_uc011mvc.1_Missense_Mutation_p.V44M|HS6ST2_uc011mvd.1_Missense_Mutation_p.V190M	NM_147175	NP_671704	Q96MM7	H6ST2_HUMAN	heparan sulfate 6-O-sulfotransferase 2 isoform	190	Lumenal (Potential).					integral to membrane	sulfotransferase activity				0	Acute lymphoblastic leukemia(192;0.000127)					GGGTCCGGCACCGGGGAGCTG	0.622													19	40					0	0	1	0	0
USP26	83844	broad.mit.edu	37	X	132161123	132161123	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:132161123G>A	uc010nrm.1	-	6	1596	c.1126C>T	c.(1126-1128)CAT>TAT	p.H376Y	USP26_uc011mvf.1_Missense_Mutation_p.H376Y	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	376					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					GCATTGCCATGGAATATCTCT	0.363													22	153					0	0	1	0	0
CCDC160	347475	broad.mit.edu	37	X	133379570	133379570	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:133379570A>G	uc011mvj.1	+	2	1061	c.740A>G	c.(739-741)AAG>AGG	p.K247R		NM_001101357	NP_001094827	A6NGH7	CC160_HUMAN	coiled-coil domain containing 160	247	Potential.									skin(1)	1						GCTGTTAGGAAGTTAAAGCAT	0.378													5	15					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135427903	135427903	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:135427903G>A	uc004ezu.1	+	6	2329	c.2038G>A	c.(2038-2040)GAA>AAA	p.E680K	GPR112_uc010nsb.1_Missense_Mutation_p.E475K|GPR112_uc010nsc.1_Missense_Mutation_p.E447K	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	680	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TGTGCCTAATGAAAATTTTAC	0.433													18	98					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135469928	135469928	+	Silent	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:135469928G>A	uc004ezu.1	+	16	8097	c.7806G>A	c.(7804-7806)GGG>GGA	p.G2602G	GPR112_uc010nsb.1_Silent_p.G2397G	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2602	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					CTGTGGGAGGGATTTTGGCTT	0.413													77	134					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994197	140994197	+	Missense_Mutation	SNP	C	G	G			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:140994197C>G	uc004fbt.2	+	4	1293	c.1007C>G	c.(1006-1008)TCT>TGT	p.S336C	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	336							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TTTCCCCAGTCTCTTCTCCAG	0.463										HNSCC(15;0.026)			23	465					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994209	140994209	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:140994209T>C	uc004fbt.2	+	4	1305	c.1019T>C	c.(1018-1020)ATT>ACT	p.I340T	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	340							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CTTCTCCAGATTCCTATGACC	0.468										HNSCC(15;0.026)			23	452					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995342	140995342	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:140995342G>A	uc004fbt.2	+	4	2438	c.2152G>A	c.(2152-2154)GAG>AAG	p.E718K	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	718							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCCTGAGTGGGAGGACTCCCT	0.557										HNSCC(15;0.026)			44	190					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995620	140995620	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:140995620C>T	uc004fbt.2	+	4	2716	c.2430C>T	c.(2428-2430)CTC>CTT	p.L810L	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	810							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					AGTCTCCTCTCCAGAGTCCTG	0.552										HNSCC(15;0.026)			120	317					0	0	1	0	0
MAGEC2	51438	broad.mit.edu	37	X	141291004	141291004	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:141291004C>T	uc004fbu.1	-	3	1118	c.770G>A	c.(769-771)GGG>GAG	p.G257E		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	257	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					AGCATATACCCCTACTGCATT	0.527										HNSCC(46;0.14)			39	200					0	0	1	0	0
HMGB3	3149	broad.mit.edu	37	X	150155604	150155604	+	Silent	SNP	T	C	C			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:150155604T>C	uc004fep.2	+	4	386	c.294T>C	c.(292-294)TCT>TCC	p.S98S	HMGB3_uc004feq.2_3'UTR|HMGB3_uc004fer.2_Silent_p.S98S	NM_005342	NP_005333	O15347	HMGB3_HUMAN	high-mobility group box 3	98	HMG box 2.				DNA recombination|multicellular organismal development	chromosome|nucleus	DNA bending activity|double-stranded DNA binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					TTCCAAGGTCTGGATTCTTCC	0.428													12	75					0	0	1	0	0
PLXNB3	5365	broad.mit.edu	37	X	153036794	153036794	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:153036794C>T	uc004fii.2	+	13	2457	c.2283C>T	c.(2281-2283)CTC>CTT	p.L761L	PLXNB3_uc011mzb.1_Intron|PLXNB3_uc011mzc.1_Silent_p.L443L|PLXNB3_uc010nuk.2_Silent_p.L784L|PLXNB3_uc011mzd.1_Silent_p.L400L	NM_005393	NP_005384	Q9ULL4	PLXB3_HUMAN	plexin B3 isoform 1	761	Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	protein binding|receptor activity			lung(1)	1	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					AGCGGGAGCTCCCAGTGCCCA	0.632													24	58					0	0	1	0	0
PLXNB3	5365	broad.mit.edu	37	X	153038448	153038448	+	Silent	SNP	C	T	T			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:153038448C>T	uc004fii.2	+	17	3057	c.2883C>T	c.(2881-2883)TTC>TTT	p.F961F	PLXNB3_uc010nuk.2_Silent_p.F984F|PLXNB3_uc011mzd.1_Silent_p.F600F|PLXNB3_uc004fij.1_5'Flank	NM_005393	NP_005384	Q9ULL4	PLXB3_HUMAN	plexin B3 isoform 1	961	IPT/TIG 2.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	protein binding|receptor activity			lung(1)	1	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					CCAGTGCCTTCGTGGGTGGCC	0.657													8	18					0	0	1	0	0
DKC1	1736	broad.mit.edu	37	X	154003486	154003486	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:154003486G>A	uc004fmm.2	+	13	1486	c.1276G>A	c.(1276-1278)GAG>AAG	p.E426K	DKC1_uc010nvf.2_Missense_Mutation_p.E421K	NM_001363	NP_001354	O60832	DKC1_HUMAN	dyskerin isoform 1	426					cell proliferation|pseudouridine synthesis|rRNA processing|telomere maintenance via telomerase	Cajal body|nucleolus|telomerase holoenzyme complex	protein binding|pseudouridine synthase activity|RNA binding|telomerase activity				0	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TGCCAAAAAAGAGGTGGTTGC	0.468									Congenital_Dyskeratosis				52	89					0	0	1	0	0
C1orf201	90529	broad.mit.edu	37	1	24706253	24706253	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chr1:24706253delA	uc001bjc.2	-	5	487	c.352delT	c.(352-354)TCGfs	p.S118fs	C1orf201_uc001bja.2_Frame_Shift_Del_p.S71fs|C1orf201_uc001bjb.2_Frame_Shift_Del_p.S26fs|C1orf201_uc001bjd.2_Frame_Shift_Del_p.S118fs|C1orf201_uc001bje.1_Frame_Shift_Del_p.S71fs|C1orf201_uc001bjf.2_5'UTR			Q5TH74	CA201_HUMAN	RecName: Full=UPF0490 protein C1orf201;	118										ovary(1)|breast(1)	2		Colorectal(325;0.000147)|Renal(390;0.00211)|Lung NSC(340;0.0191)|all_lung(284;0.0251)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.056)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;4.48e-25)|Colorectal(126;7.29e-08)|COAD - Colon adenocarcinoma(152;3.85e-06)|GBM - Glioblastoma multiforme(114;0.000399)|BRCA - Breast invasive adenocarcinoma(304;0.00107)|STAD - Stomach adenocarcinoma(196;0.00151)|KIRC - Kidney renal clear cell carcinoma(1967;0.00393)|READ - Rectum adenocarcinoma(331;0.0672)|Lung(427;0.145)		ATAAAATCCGATGGGATAGTG	0.423													40	62	---	---	---	---					
FAM9C	171484	broad.mit.edu	37	X	13061230	13061253	+	Splice_Site	DEL	GGACTTAAACACTTTACCCCGTGT	-	-			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:13061230_13061253delGGACTTAAACACTTTACCCCGTGT	uc004cvh.1	-	3	392	c.182_splice	c.e3+1	p.G61_splice	FAM9C_uc004cvg.2_Splice_Site_p.G61_splice	NM_174901	NP_777561	Q8IZT9	FAM9C_HUMAN	family with sequence similarity 9, member C							nucleus					0						CAGGCAAAAGGGACTTAAACACTTTACCCCGTGTGTTCATCTGT	0.411													11	173	---	---	---	---					
HUWE1	10075	broad.mit.edu	37	X	53576039	53576040	+	Frame_Shift_Ins	INS	-	ACGC	ACGC			TCGA-EB-A3Y6-01A-21D-A23B-08	TCGA-EB-A3Y6-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7873013f-3c2d-4f26-a001-c52edfc812cc	ed8e4d8c-0f58-48c7-818c-70854f7808f1	g.chrX:53576039_53576040insACGC	uc004dsp.2	-	67	10317_10318	c.9915_9916insGCGT	c.(9913-9918)CGTTCAfs	p.R3305fs	HUWE1_uc004dsn.2_Frame_Shift_Ins_p.R2113fs	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	3305_3306					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						CGCCCCCCTGAACGCTGGATCT	0.525													18	78	---	---	---	---					
