Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SAMD11	148398	broad.mit.edu	37	1	874684	874684	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:874684C>T	uc001abw.1	+	7	630	c.550C>T	c.(550-552)CCC>TCC	p.P184S	SAMD11_uc001abx.1_Missense_Mutation_p.P63S	NM_152486	NP_689699	Q96NU1	SAM11_HUMAN	sterile alpha motif domain containing 11	184						nucleus					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.74e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000472)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		GGAGCTGGGGCCCAGCATGGC	0.692000													12	7					0	0	1	0	0
SKI	6497	broad.mit.edu	37	1	2234765	2234765	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:2234765C>T	uc001aja.3	+	3	1209	c.1137C>T	c.(1135-1137)TTC>TTT	p.F379F		NM_003036	NP_003027	P12755	SKI_HUMAN	v-ski sarcoma viral oncogene homolog	379					anterior/posterior axis specification|BMP signaling pathway|bone morphogenesis|cell motility|cell proliferation|embryonic limb morphogenesis|face morphogenesis|lens morphogenesis in camera-type eye|myelination in peripheral nervous system|myotube differentiation|negative regulation of activin receptor signaling pathway|negative regulation of BMP signaling pathway|negative regulation of fibroblast proliferation|negative regulation of osteoblast differentiation|negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|neural tube closure|nose morphogenesis|olfactory bulb development|palate development|positive regulation of DNA binding|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|protein homotrimerization|regulation of apoptosis|retina development in camera-type eye|skeletal muscle fiber development|SMAD protein signal transduction|somatic stem cell maintenance|transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|PML body|transcription factor complex|transcriptional repressor complex	histone deacetylase inhibitor activity|nucleotide binding|protein domain specific binding|protein kinase binding|repressing transcription factor binding|SMAD binding|transcription corepressor activity|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(77;0.000139)|all_epithelial(69;4.45e-05)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)			Epithelial(90;2.14e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.72e-29)|GBM - Glioblastoma multiforme(42;2.45e-08)|Colorectal(212;5.33e-05)|COAD - Colon adenocarcinoma(227;0.000228)|Kidney(185;0.00268)|BRCA - Breast invasive adenocarcinoma(365;0.00471)|STAD - Stomach adenocarcinoma(132;0.0147)|KIRC - Kidney renal clear cell carcinoma(229;0.0385)|Lung(427;0.207)		TCTCTGCTTTCCGACCCTGGT	0.592000													165	212					0	0	1	0	0
ESPN	83715	broad.mit.edu	37	1	6520166	6520166	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:6520166G>A	uc001amy.2	+	13	2693	c.2525G>A	c.(2524-2526)CGA>CAA	p.R842Q	ESPN_uc001amz.2_Missense_Mutation_p.R276Q	NM_031475	NP_113663	B1AK53	ESPN_HUMAN	espin	842					sensory perception of sound	brush border|cytoplasm|filamentous actin|stereocilium	actin filament binding|SH3 domain binding				0	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;3.6e-37)|all_epithelial(116;2.56e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|all_hematologic(16;6.92e-06)|Colorectal(325;4.47e-05)|Acute lymphoblastic leukemia(12;4.92e-05)|Breast(487;7.61e-05)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)		Epithelial(90;1.82e-35)|GBM - Glioblastoma multiforme(13;3e-28)|Kidney(185;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(229;5.63e-08)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;1.41e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000109)|STAD - Stomach adenocarcinoma(132;0.00167)|Lung(427;0.0108)|LUSC - Lung squamous cell carcinoma(448;0.0253)|READ - Rectum adenocarcinoma(331;0.0419)		CCCTGGCAGCGACAGGTCATC	0.657000													32	15					0	0	1	0	0
CA6	765	broad.mit.edu	37	1	9009404	9009404	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:9009404G>A	uc001apm.2	+	2	186	c.162G>A	c.(160-162)AGG>AGA	p.R54R	CA6_uc009vmn.2_Intron	NM_001215	NP_001206	P23280	CAH6_HUMAN	carbonic anhydrase VI precursor	54					one-carbon metabolic process	extracellular region	carbonate dehydratase activity|zinc ion binding			ovary(2)	2	Ovarian(185;0.112)|all_lung(157;0.143)	all_epithelial(116;1.02e-19)|all_lung(118;3.6e-06)|Lung NSC(185;7.94e-06)|Renal(390;0.000147)|Breast(348;0.00123)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.9e-07)|COAD - Colon adenocarcinoma(227;8.28e-05)|Kidney(185;0.000268)|KIRC - Kidney renal clear cell carcinoma(229;0.000971)|STAD - Stomach adenocarcinoma(132;0.00184)|BRCA - Breast invasive adenocarcinoma(304;0.00192)|READ - Rectum adenocarcinoma(331;0.0649)		ACCTACAGAGGACGAAGGTGC	0.582000													17	34					0	0	1	0	0
AADACL3	126767	broad.mit.edu	37	1	12785440	12785440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:12785440C>T	uc009vnn.1	+	4	763	c.530C>T	c.(529-531)TCG>TTG	p.S177L	AADACL3_uc001aug.1_Missense_Mutation_p.S107L	NM_001103170	NP_001096640	Q5VUY0	ADCL3_HUMAN	arylacetamide deacetylase-like 3 isoform 1	177							hydrolase activity				0	Ovarian(185;0.249)	Lung NSC(185;8.27e-05)|all_lung(284;9.47e-05)|Renal(390;0.000147)|Colorectal(325;0.000583)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		CAAACCCCTTCGTTTCAACAG	0.493000													114	174					0	0	1	0	0
C1orf64	149563	broad.mit.edu	37	1	16332626	16332626	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:16332626G>A	uc001axn.2	+	2	363	c.295G>A	c.(295-297)GGT>AGT	p.G99S		NM_178840	NP_849162	Q8NEQ6	CA064_HUMAN	hypothetical protein LOC149563	99										breast(2)	2		Colorectal(325;0.000435)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;3.25e-07)|COAD - Colon adenocarcinoma(227;2.08e-05)|BRCA - Breast invasive adenocarcinoma(304;9.19e-05)|Kidney(64;0.000165)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.0114)|READ - Rectum adenocarcinoma(331;0.0649)		GACCCCCATGGGTGGGGGATG	0.647000													59	71					0	0	1	0	0
MST1P9	11223	broad.mit.edu	37	1	17085024	17085024	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:17085024G>A	uc010ock.1	-	11	1451	c.1451C>T	c.(1450-1452)TCC>TTC	p.S484F	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_Missense_Mutation_p.S58F	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						GCGCAGCTTGGAACGACGCTG	0.602000													30	191					0	0	1	0	0
PADI3	51702	broad.mit.edu	37	1	17592171	17592171	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:17592171G>A	uc001bai.2	+	4	404	c.364G>A	c.(364-366)GAC>AAC	p.D122N		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	122					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	TCTGGATTGCGACCTGAACTG	0.567000													80	96					0	0	1	0	0
E2F2	1870	broad.mit.edu	37	1	23842934	23842934	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:23842934G>A	uc001bhe.1	-	6	1366	c.938C>T	c.(937-939)CCT>CTT	p.P313L		NM_004091	NP_004082	Q14209	E2F2_HUMAN	E2F transcription factor 2	313					G1 phase of mitotic cell cycle|transcription initiation from RNA polymerase II promoter	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(2)|skin(2)	4		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.52e-24)|Colorectal(126;6.25e-08)|COAD - Colon adenocarcinoma(152;3.42e-06)|GBM - Glioblastoma multiforme(114;8.98e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00102)|KIRC - Kidney renal clear cell carcinoma(1967;0.00366)|STAD - Stomach adenocarcinoma(196;0.0132)|READ - Rectum adenocarcinoma(331;0.0652)|Lung(427;0.0888)|LUSC - Lung squamous cell carcinoma(448;0.19)		CTCCTCGGAAGGACTGTCCGG	0.622000													20	29					0	0	1	0	0
SESN2	83667	broad.mit.edu	37	1	28599287	28599288	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:28599287_28599288CC>TT	uc001bps.2	+	5	1086_1087	c.733_734CC>TT	c.(733-735)CCG>TTG	p.P245L		NM_031459	NP_113647	P58004	SESN2_HUMAN	sestrin 2	245					cell cycle arrest	cytoplasm|nucleus				skin(3)|ovary(2)|pancreas(1)|lung(1)	7		Colorectal(325;3.46e-05)|Lung NSC(340;4.37e-05)|all_lung(284;4.76e-05)|Renal(390;0.00121)|Breast(348;0.00345)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0261)		OV - Ovarian serous cystadenocarcinoma(117;2.98e-22)|Colorectal(126;3.04e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00279)|STAD - Stomach adenocarcinoma(196;0.00303)|BRCA - Breast invasive adenocarcinoma(304;0.00595)|READ - Rectum adenocarcinoma(331;0.0649)		AAGCAGGGACCCGTTGAACAAC	0.470000													19	20					0	0	1	0	0
PEF1	553115	broad.mit.edu	37	1	32096301	32096301	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:32096301G>A	uc001bth.1	-	5	780	c.768C>T	c.(766-768)GCC>GCT	p.A256A	HCRTR1_uc010ogl.1_Intron|PEF1_uc001bte.1_3'UTR|PEF1_uc001btf.1_Silent_p.A95A|PEF1_uc001btg.1_Silent_p.A186A	NM_012392	NP_036524	Q9UBV8	PEF1_HUMAN	penta-EF-hand domain containing 1	256	EF-hand 5.|Required for interaction with PDCD6.				response to calcium ion	cytoplasm|membrane	calcium ion binding|protein heterodimerization activity				0		Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)|all_neural(195;0.186)		STAD - Stomach adenocarcinoma(196;0.0546)		TCTCCCGGAAGGCCTCTGTCA	0.577000													33	46					0	0	1	0	0
BAI2	576	broad.mit.edu	37	1	32204495	32204495	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:32204495G>A	uc001btn.2	-	16	2893	c.2539C>T	c.(2539-2541)CGC>TGC	p.R847C	BAI2_uc001btp.1_5'Flank|BAI2_uc010ogn.1_5'Flank|BAI2_uc010ogo.1_Missense_Mutation_p.R489C|BAI2_uc010ogp.1_Missense_Mutation_p.R780C|BAI2_uc010ogq.1_Missense_Mutation_p.R847C|BAI2_uc001bto.2_Missense_Mutation_p.R847C|BAI2_uc001btq.1_Missense_Mutation_p.R780C	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	847	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		GTAGGGGGGCGCACAGTCACT	0.627000													5	235					0	0	1	0	0
ZSCAN20	7579	broad.mit.edu	37	1	33960900	33960900	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:33960900C>T	uc001bxj.3	+	8	3123	c.2956C>T	c.(2956-2958)CCG>TCG	p.P986S	ZSCAN20_uc009vui.2_Missense_Mutation_p.P985S	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	986					viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				GGGAGAGAAGCCGTATAAGTG	0.473000													30	46					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34238207	34238207	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:34238207C>T	uc001bxn.1	-	13	1718	c.1689G>A	c.(1687-1689)AAG>AAA	p.K563K	CSMD2_uc001bxm.1_Silent_p.K603K	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	563	Sushi 3.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ATTGGTTATTCTTTTGGCATG	0.587000													55	99					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34401385	34401385	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:34401385C>T	uc001bxn.1	-	4	597	c.568G>A	c.(568-570)GAC>AAC	p.D190N	CSMD2_uc001bxm.1_Missense_Mutation_p.D230N	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	190	Sushi 1.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGGGGGAAGTCCCACGTGGCG	0.637000													24	37					0	0	1	0	0
C1orf94	84970	broad.mit.edu	37	1	34678000	34678000	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:34678000G>A	uc001bxs.3	+	6	1543	c.1144G>A	c.(1144-1146)GGA>AGA	p.G382R	C1orf94_uc001bxt.2_Missense_Mutation_p.G572R	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	382							protein binding				0		Myeloproliferative disorder(586;0.0393)				CTTTCCCCAAGGATATGGGTG	0.562000													31	43					0	0	1	0	0
GJB5	2709	broad.mit.edu	37	1	35223275	35223275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:35223275G>A	uc001bxu.2	+	2	444	c.344G>A	c.(343-345)CGC>CAC	p.R115H	GJB4_uc001bxv.1_5'Flank	NM_005268	NP_005259	O95377	CXB5_HUMAN	gap junction protein, beta 5, 31.1kDa	115	Cytoplasmic (Potential).				cell communication|epidermis development	connexon complex|integral to membrane				ovary(1)	1		Myeloproliferative disorder(586;0.0393)				AACAGTGGGCGCCTCTACCTG	0.602000													82	83					0	0	1	0	0
GJB5	2709	broad.mit.edu	37	1	35223537	35223537	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:35223537C>T	uc001bxu.2	+	2	706	c.606C>T	c.(604-606)CTC>CTT	p.L202L	GJB4_uc001bxv.1_5'Flank	NM_005268	NP_005259	O95377	CXB5_HUMAN	gap junction protein, beta 5, 31.1kDa	202	Helical; (Potential).				cell communication|epidermis development	connexon complex|integral to membrane				ovary(1)	1		Myeloproliferative disorder(586;0.0393)				TGCTCAACCTCGTGGAGCTCA	0.547000													47	65					0	0	1	0	0
TRAPPC3	27095	broad.mit.edu	37	1	36603473	36603473	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:36603473A>C	uc001bzx.2	-	4	435	c.347T>G	c.(346-348)GTG>GGG	p.V116G	TRAPPC3_uc001bzy.2_Missense_Mutation_p.V70G	NM_014408	NP_055223	O43617	TPPC3_HUMAN	trafficking protein particle complex 3	116						endoplasmic reticulum	guanylate cyclase activity|heme binding			central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0393)				AGGAAGTTCCACAAAGTCCAC	0.448000													49	80					0	0	1	0	0
OXCT2	64064	broad.mit.edu	37	1	40235554	40235554	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:40235554G>A	uc001ceb.1	-	1	1467	c.1374C>T	c.(1372-1374)ACC>ACT	p.T458T	BMP8B_uc001cdz.1_Intron|BMP8B_uc001cea.1_Intron|OXCT2_uc009vvu.1_Silent_p.T452T	NM_022120	NP_071403	Q9BYC2	SCOT2_HUMAN	3-oxoacid CoA transferase 2 precursor	458					ketone body catabolic process	microtubule-based flagellum|mitochondrion	3-oxoacid CoA-transferase activity			pancreas(1)	1	all_cancers(7;5.56e-14)|all_lung(5;3.88e-17)|all_epithelial(6;3.78e-16)|Lung NSC(20;7.03e-07)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;1.87e-18)|Epithelial(16;1.92e-17)|all cancers(16;4.03e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)		Succinic acid(DB00139)	ACCGCTTCCCGGTCAGCGGCA	0.587000													13	42					0	0	1	0	0
DMRTB1	63948	broad.mit.edu	37	1	53927249	53927249	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:53927249C>T	uc001cvq.1	+	2	736	c.681C>T	c.(679-681)GCC>GCT	p.A227A		NM_033067	NP_149056	Q96MA1	DMRTB_HUMAN	DMRT-like family B with proline-rich C-terminal,	227	Pro-rich.				sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						ACCTGGACGCCCCTCCTGGCG	0.667000													49	69					0	0	1	0	0
C1orf168	199920	broad.mit.edu	37	1	57185991	57185991	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:57185991C>T	uc001cym.3	-	18	2392	c.1986G>A	c.(1984-1986)GAG>GAA	p.E662E	C1orf168_uc001cyl.2_RNA	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	662										ovary(3)|skin(2)	5						TGACAATAATCTCTTTGTCGT	0.308000													18	22					0	0	1	0	0
C1orf168	199920	broad.mit.edu	37	1	57206413	57206413	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:57206413C>T	uc001cym.3	-	13	2066	c.1660G>A	c.(1660-1662)GAT>AAT	p.D554N	C1orf168_uc009vzu.1_RNA|C1orf168_uc001cyl.2_RNA	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	554										ovary(3)|skin(2)	5						TTAAATCTATCCTTTTCTTTC	0.353000													6	9					0	0	1	0	0
C8B	732	broad.mit.edu	37	1	57425773	57425773	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:57425773C>T	uc001cyp.2	-	2	236	c.169G>A	c.(169-171)GAT>AAT	p.D57N	C8B_uc010oon.1_5'UTR|C8B_uc010ooo.1_Missense_Mutation_p.D5N	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	57					complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						AGGGTAACATCCACACTCCGC	0.483000													31	44					0	0	1	0	0
HOOK1	51361	broad.mit.edu	37	1	60312778	60312778	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:60312778G>A	uc009wad.2	+	11	952	c.850G>A	c.(850-852)GAA>AAA	p.E284K	HOOK1_uc001czo.2_Missense_Mutation_p.E284K|HOOK1_uc001czp.2_RNA|HOOK1_uc010oor.1_Missense_Mutation_p.E242K	NM_015888	NP_056972	Q9UJC3	HOOK1_HUMAN	hook homolog 1	284	Potential.|Sufficient for interaction with microtubules.				early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|microtubule cytoskeleton organization|multicellular organismal development|protein transport	FHF complex|microtubule	identical protein binding			ovary(1)|breast(1)	2	all_cancers(7;0.000129)					GCAGCTAATCGAATTCCAGCA	0.348000													26	31					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75037015	75037015	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:75037015C>T	uc001dgg.2	-	14	4598	c.4379G>A	c.(4378-4380)GGG>GAG	p.G1460E		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1460	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						ATCGCCACTCCCAGTGGCTGC	0.607000													95	103					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75037720	75037720	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:75037720C>T	uc001dgg.2	-	14	3893	c.3674G>A	c.(3673-3675)GGA>GAA	p.G1225E		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1225	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CTGCACCTTTCCTGCTGGCTC	0.627000													42	41					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75072531	75072531	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:75072531C>T	uc001dgg.2	-	10	1462	c.1243G>A	c.(1243-1245)GAA>AAA	p.E415K	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.E209K	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	415	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GTGCTCTTTTCTTTCCTAGAT	0.403000													27	34					0	0	1	0	0
ST6GALNAC5	81849	broad.mit.edu	37	1	77509909	77509909	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:77509909G>A	uc001dhi.2	+	3	457	c.282G>A	c.(280-282)AGG>AGA	p.R94R	ST6GALNAC5_uc010ori.1_Intron|ST6GALNAC5_uc009wbw.2_RNA	NM_030965	NP_112227	Q9BVH7	SIA7E_HUMAN	sialyltransferase 7E	94	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			pancreas(1)|skin(1)	2						TGCACTGCAGGGACTGTGCCC	0.602000													34	43					0	0	1	0	0
PIGK	10026	broad.mit.edu	37	1	77620261	77620261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:77620261G>A	uc001dhk.2	-	9	904	c.859C>T	c.(859-861)CGC>TGC	p.R287C	PIGK_uc010orj.1_Missense_Mutation_p.R211C|PIGK_uc009wbx.2_Missense_Mutation_p.R193C|PIGK_uc001dhl.1_Missense_Mutation_p.R287C	NM_005482	NP_005473	Q92643	GPI8_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	287	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|protein thiol-disulfide exchange|proteolysis	GPI-anchor transamidase complex	cysteine-type endopeptidase activity|GPI-anchor transamidase activity|protein binding			ovary(2)|pancreas(1)	3						AGATCAGTGCGATGTCCAGGA	0.348000													30	22					0	0	1	0	0
SYDE2	84144	broad.mit.edu	37	1	85656133	85656133	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:85656133A>T	uc009wcm.2	-	2	1097	c.1048T>A	c.(1048-1050)TTA>ATA	p.L350I	SYDE2_uc001dku.3_Missense_Mutation_p.L350I	NM_032184	NP_115560	Q5VT97	SYDE2_HUMAN	synapse defective 1, Rho GTPase, homolog 2	350					activation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	Rho GTPase activator activity			ovary(1)|central_nervous_system(1)	2				all cancers(265;0.0126)|Epithelial(280;0.0336)		TTTTTCGATAATGAAGAGTTT	0.373000													6	10					0	0	1	0	0
PALMD	54873	broad.mit.edu	37	1	100155125	100155125	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:100155125G>A	uc001dsg.2	+	7	1752	c.1309G>A	c.(1309-1311)GAT>AAT	p.D437N	PALMD_uc001dsf.2_Missense_Mutation_p.D437N	NM_017734	NP_060204	Q9NP74	PALMD_HUMAN	palmdelphin	437					regulation of cell shape	cytoplasm|membrane				ovary(2)|pancreas(1)	3		all_epithelial(167;0.000813)|all_lung(203;0.0214)|Lung NSC(277;0.0216)		Epithelial(280;0.067)|all cancers(265;0.117)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)		GACAGGATATGATGGGATCAT	0.473000													25	30					0	0	1	0	0
WDR47	22911	broad.mit.edu	37	1	109554018	109554018	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:109554018C>T	uc001dwj.2	-	5	1026	c.650G>A	c.(649-651)GGA>GAA	p.G217E	WDR47_uc001dwl.2_Missense_Mutation_p.G224E|WDR47_uc001dwi.2_Missense_Mutation_p.G217E|WDR47_uc001dwk.2_Missense_Mutation_p.G189E|WDR47_uc010ovf.1_Missense_Mutation_p.G144E	NM_001142551	NP_001136023	O94967	WDR47_HUMAN	WD repeat domain 47 isoform 3	217										ovary(1)	1		all_lung(203;0.00519)|all_epithelial(167;0.00611)|Lung NSC(277;0.00822)		Colorectal(144;0.0165)|Lung(183;0.0484)|COAD - Colon adenocarcinoma(174;0.128)|Epithelial(280;0.168)|all cancers(265;0.201)|LUSC - Lung squamous cell carcinoma(189;0.244)		AATTTCTTCTCCAGTTGCTTT	0.388000													87	126					0	0	1	0	0
AP4B1	10717	broad.mit.edu	37	1	114440554	114440554	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:114440554T>C	uc001eeb.2	-	7	1353	c.1210A>G	c.(1210-1212)ACT>GCT	p.T404A	uc001edv.1_RNA|AP4B1_uc001eec.2_Missense_Mutation_p.T236A|AP4B1_uc001eed.2_Missense_Mutation_p.T404A|AP4B1_uc010owp.1_Missense_Mutation_p.T305A|AP4B1_uc001eea.1_Missense_Mutation_p.T198A|AP4B1_uc001eee.1_5'Flank	NM_006594	NP_006585	Q9Y6B7	AP4B1_HUMAN	adaptor-related protein complex 4, beta 1	404					intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|soluble fraction|trans-Golgi network	protein binding|protein transporter activity			ovary(3)|central_nervous_system(1)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.1e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCTCGGAAAGTCTGCACCACC	0.493000													37	71					0	0	1	0	0
TRIM45	80263	broad.mit.edu	37	1	117660703	117660703	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:117660703A>T	uc001egz.2	-	2	1763	c.1175T>A	c.(1174-1176)ATT>AAT	p.I392N	TRIM45_uc009whe.2_Intron|TRIM45_uc001eha.2_Missense_Mutation_p.I288N	NM_025188	NP_079464	Q9H8W5	TRI45_HUMAN	tripartite motif-containing 45 isoform 1	392						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)	1	Lung SC(450;0.225)	all_cancers(81;0.000979)|all_lung(203;7.65e-05)|all_epithelial(167;0.000134)|Lung NSC(69;0.000389)		Lung(183;0.0537)|Colorectal(144;0.172)|LUSC - Lung squamous cell carcinoma(189;0.187)		TTTGGTATTAATCGTACCATA	0.468000													60	68					0	0	1	0	0
NBPF9	400818	broad.mit.edu	37	1	144828599	144828599	+	Missense_Mutation	SNP	G	A	A	rs28736716		TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:144828599G>A	uc009wig.1	+	23	2720	c.2644G>A	c.(2644-2646)GGA>AGA	p.G882R	NBPF9_uc010oxn.1_Missense_Mutation_p.G780R|NBPF9_uc010oxo.1_Missense_Mutation_p.G807R|NBPF9_uc010oxr.1_Missense_Mutation_p.G909R|NBPF9_uc010oxt.1_Missense_Mutation_p.G697R|NBPF9_uc001ekg.1_Missense_Mutation_p.G209R|NBPF9_uc001ekk.1_Missense_Mutation_p.G453R|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Missense_Mutation_p.G209R|NBPF9_uc010oye.1_Intron|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Missense_Mutation_p.G542R|uc001elr.3_5'Flank	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	882	NBPF 7.					cytoplasm					0						CTCACTGGATGGATGTTATTC	0.463000													8	146					0	0	1	0	0
ANKRD35	148741	broad.mit.edu	37	1	145562002	145562002	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:145562002C>A	uc001eob.1	+	10	1798	c.1690C>A	c.(1690-1692)CAG>AAG	p.Q564K	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Missense_Mutation_p.Q407K	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	564										ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GGTTCCTTCCCAGGAGTCCAG	0.592000													38	137					2.24722e-20	2.2809e-20	1	1	0
GJA5	2702	broad.mit.edu	37	1	147230857	147230857	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:147230857C>T	uc001eps.1	-	2	631	c.490G>A	c.(490-492)GAG>AAG	p.E164K	GJA5_uc001ept.1_Missense_Mutation_p.E164K	NM_181703	NP_859054	P36382	CXA5_HUMAN	connexin 40	164	Cytoplasmic (Potential).				angiogenesis|cell-cell junction assembly|muscle contraction	integral to membrane				ovary(1)	1	all_hematologic(923;0.0276)		LUSC - Lung squamous cell carcinoma(543;0.202)			AAGCCCACCTCCATGGTGGTG	0.577000													163	101					0	0	1	0	0
ECM1	1893	broad.mit.edu	37	1	150482583	150482583	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:150482583C>T	uc001eus.2	+	5	509	c.310C>T	c.(310-312)CCC>TCC	p.P104S	ECM1_uc010pce.1_Missense_Mutation_p.P33S|ECM1_uc010pcf.1_Missense_Mutation_p.P26S|ECM1_uc001eut.2_Missense_Mutation_p.P104S|ECM1_uc001euu.2_Missense_Mutation_p.P133S|ECM1_uc001euv.2_Missense_Mutation_p.P131S|ECM1_uc009wlu.2_5'UTR	NM_004425	NP_004416	Q16610	ECM1_HUMAN	extracellular matrix protein 1 isoform 1	104					angiogenesis|biomineral tissue development|negative regulation of bone mineralization|negative regulation of peptidase activity|ossification|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of I-kappaB kinase/NF-kappaB cascade	proteinaceous extracellular matrix	laminin binding|protease binding|protein C-terminus binding|signal transducer activity			ovary(2)|central_nervous_system(1)	3	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.29e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			TGCAGTGGGTCCCCCTCTCCC	0.582000													386	156					0	0	1	0	0
ADAMTSL4	54507	broad.mit.edu	37	1	150525609	150525609	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:150525609A>C	uc001eux.2	+	5	550	c.314A>C	c.(313-315)CAG>CCG	p.Q105P	ADAMTSL4_uc001euw.2_Missense_Mutation_p.Q105P|ADAMTSL4_uc009wlw.2_Missense_Mutation_p.Q105P|ADAMTSL4_uc010pcg.1_Missense_Mutation_p.Q105P	NM_019032	NP_061905	Q6UY14	ATL4_HUMAN	thrombospondin repeat containing 1 isoform 1	105					apoptosis|positive regulation of apoptosis		metalloendopeptidase activity|protease binding			ovary(1)|skin(1)	2	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;3.18e-23)|all cancers(9;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(6;1.13e-14)|BRCA - Breast invasive adenocarcinoma(12;0.000503)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			CCCAGACCCCAGACTTCTCCA	0.667000													128	61					0	0	1	0	0
SPRR2G	6706	broad.mit.edu	37	1	153122444	153122444	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:153122444G>A	uc009wod.1	-	2	264	c.143C>T	c.(142-144)CCT>CTT	p.P48L		NM_001014291	NP_001014313	Q9BYE4	SPR2G_HUMAN	small proline-rich protein 2G	48					keratinization	cornified envelope|cytoplasm					0	all_lung(78;1.78e-30)|Lung NSC(65;7.29e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCATGGTGGAGGTGGGCAATG	0.572000													154	79					0	0	1	0	0
SLC27A3	11000	broad.mit.edu	37	1	153749199	153749199	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:153749199C>T	uc001fcz.2	+	2	1079	c.1014C>T	c.(1012-1014)ACC>ACT	p.T338T	SLC27A3_uc009won.2_RNA	NM_024330	NP_077306	Q5K4L6	S27A3_HUMAN	solute carrier family 27 member 3	338	AMP (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial membrane	ligase activity|nucleotide binding			ovary(1)	1	all_lung(78;6.47e-32)|Lung NSC(65;2.52e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			CCTCTGGCACCACGGGTGAGG	0.597000													77	41					0	0	1	0	0
THBS3	7059	broad.mit.edu	37	1	155170795	155170795	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:155170795C>T	uc001fix.2	-	13	1464	c.1441G>A	c.(1441-1443)GAC>AAC	p.D481N	RAG1AP1_uc010pey.1_Intron|THBS3_uc009wqi.2_Missense_Mutation_p.D472N|THBS3_uc001fiz.2_Missense_Mutation_p.D444N|THBS3_uc001fiy.2_Missense_Mutation_p.D10N|THBS3_uc010pfu.1_Missense_Mutation_p.D361N|THBS3_uc010pfv.1_RNA|THBS3_uc001fja.2_RNA	NM_007112	NP_009043	P49746	TSP3_HUMAN	thrombospondin 3 precursor	481	TSP type-3 1.				cell-matrix adhesion	extracellular region|perinuclear region of cytoplasm	calcium ion binding|heparin binding|structural molecule activity			breast(3)|ovary(2)	5	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			AGGCAGTTGTCCTAAAGTTCA	0.557000													338	129					0	0	1	0	0
IQGAP3	128239	broad.mit.edu	37	1	156508826	156508826	+	Splice_Site	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:156508826C>T	uc001fpf.2	-	26	3132	c.3057_splice	c.e26-1	p.K1019_splice		NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3						small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CACCTTTGACCTGTGGTTTAA	0.537000													13	68					0	0	1	0	0
INSRR	3645	broad.mit.edu	37	1	156823982	156823982	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:156823982C>T	uc010pht.1	-	2	453	c.199G>A	c.(199-201)GAC>AAC	p.D67N	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron|INSRR_uc009wsj.1_Missense_Mutation_p.D67N	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	67					protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCGCGGAAGTCCTCCCCGGTG	0.627000													95	55					0	0	1	0	0
ARHGEF11	9826	broad.mit.edu	37	1	156948003	156948003	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:156948003G>A	uc001fqo.2	-	6	1543	c.503C>T	c.(502-504)CCT>CTT	p.P168L	ARHGEF11_uc001fqn.2_Missense_Mutation_p.P168L	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	168					actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TACCTGCAGAGGTTTGGGTCC	0.547000													84	40					0	0	1	0	0
CADM3	57863	broad.mit.edu	37	1	159163824	159163824	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:159163824G>A	uc001ftl.2	+	5	827	c.685G>A	c.(685-687)GTT>ATT	p.V229I	CADM3_uc009wsy.1_Intron|CADM3_uc001ftk.2_Missense_Mutation_p.V263I	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	229	Extracellular (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity	p.T229I(1)		ovary(2)	2	all_hematologic(112;0.0429)					ACGCATTGAAGTTTTATGTAT	0.493000													100	56					0	0	1	0	0
UFC1	51506	broad.mit.edu	37	1	161128000	161128000	+	Missense_Mutation	SNP	G	T	T	rs144419091		TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:161128000G>T	uc001fyd.3	+	5	676	c.422G>T	c.(421-423)GGG>GTG	p.G141V	USP21_uc010pkc.1_5'Flank|USP21_uc010pkd.1_5'Flank|USP21_uc010pke.1_5'Flank|USP21_uc010pkf.1_5'Flank	NM_016406	NP_057490	Q9Y3C8	UFC1_HUMAN	ubiquitin-fold modifier conjugating enzyme 1	141					protein ufmylation		protein binding|UFM1 conjugating enzyme activity				0	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			ATGGCTCTGGGGGTAAGTTTT	0.453000													50	214					2.5401e-28	2.58874e-28	1	1	0
NOS1AP	9722	broad.mit.edu	37	1	162313646	162313646	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:162313646C>T	uc001gbv.2	+	6	862	c.475C>T	c.(475-477)CGG>TGG	p.R159W	NOS1AP_uc010pkr.1_Missense_Mutation_p.R154W|NOS1AP_uc010pks.1_RNA|NOS1AP_uc001gbw.2_Missense_Mutation_p.R154W	NM_014697	NP_055512	O75052	CAPON_HUMAN	nitric oxide synthase 1 (neuronal) adaptor	159	PID.				regulation of apoptosis|regulation of nitric oxide biosynthetic process|regulation of nitric-oxide synthase activity		nitric-oxide synthase binding|PDZ domain binding			lung(2)|upper_aerodigestive_tract(1)	3	all_hematologic(112;0.203)		BRCA - Breast invasive adenocarcinoma(70;0.0537)			GAGAATCGTTCGGACGGTGGG	0.557000													79	258					0	0	1	0	0
SELP	6403	broad.mit.edu	37	1	169582216	169582216	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:169582216C>T	uc001ggi.3	-	5	791	c.726G>A	c.(724-726)CTG>CTA	p.L242L	SELP_uc001ggh.2_Silent_p.L77L|SELP_uc009wvr.2_Silent_p.L242L	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	242	Extracellular (Potential).|Sushi 1.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	CCAAGCATTCCAGCTTGCTGG	0.478000													39	141					0	0	1	0	0
DNM3	26052	broad.mit.edu	37	1	172357745	172357745	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:172357745G>A	uc001gie.2	+	20	2494	c.2318G>A	c.(2317-2319)AGG>AAG	p.R773K	DNM3_uc001gif.2_Missense_Mutation_p.R769K|DNM3_uc001gih.1_Missense_Mutation_p.R129K	NM_015569	NP_056384	Q9UQ16	DYN3_HUMAN	dynamin 3 isoform a	779					endocytosis|filopodium assembly|synapse assembly	dendritic spine|microtubule|perinuclear region of cytoplasm|postsynaptic density	GTP binding|GTPase activity|protein binding			breast(1)	1						ACCCAAAGGAGGCCAACACTA	0.547000													26	90					0	0	1	0	0
TNN	63923	broad.mit.edu	37	1	175049337	175049337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:175049337G>A	uc001gkl.1	+	4	936	c.823G>A	c.(823-825)GAG>AAG	p.E275K	TNN_uc010pmx.1_Missense_Mutation_p.E275K	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	275	Fibronectin type-III 1.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CAAGAACACGGAGGATTCTCT	0.612000													39	136					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175375428	175375428	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:175375428G>A	uc001gkp.1	-	1	504	c.423C>T	c.(421-423)ATC>ATT	p.I141I	TNR_uc009wwu.1_Silent_p.I141I|TNR_uc010pmz.1_Silent_p.I141I	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	141	Potential.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CCAGCATCTCGATCCGGCTCA	0.597000													77	237					0	0	1	0	0
TOR3A	64222	broad.mit.edu	37	1	179057065	179057065	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:179057065T>G	uc001gmd.2	+	4	811	c.659T>G	c.(658-660)ATC>AGC	p.I220S	TOR3A_uc010pnd.1_Missense_Mutation_p.I4S	NM_022371	NP_071766	Q9H497	TOR3A_HUMAN	torsin family 3, member A precursor	220					chaperone mediated protein folding requiring cofactor	endoplasmic reticulum	ATP binding			pancreas(1)	1						ATGAGCCAGATCCGGGAGACG	0.612000													76	48					0	0	1	0	0
C1orf26	54823	broad.mit.edu	37	1	185175759	185175759	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:185175759C>T	uc001grg.3	+	13	1950	c.1836C>T	c.(1834-1836)ATC>ATT	p.I612I	C1orf26_uc001grh.3_Silent_p.I612I	NM_001105518	NP_001098988	Q5T5J6	SWT1_HUMAN	hypothetical protein LOC54823	612											0						CTCTTTAGATCCTGTACCTGA	0.294000													17	59					0	0	1	0	0
TPR	7175	broad.mit.edu	37	1	186313130	186313130	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:186313130G>A	uc001grv.2	-	26	3807	c.3510C>T	c.(3508-3510)GTC>GTT	p.V1170V		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	1170	Potential.				carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		CAGAGGCAACGACCTTGTCAC	0.388000			T	NTRK1	papillary thyroid								24	73					0	0	1	0	0
C1orf27	54953	broad.mit.edu	37	1	186352158	186352158	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:186352158C>T	uc001grw.2	+	3	340	c.104C>T	c.(103-105)TCG>TTG	p.S35L	C1orf27_uc010poq.1_Missense_Mutation_p.S35L|C1orf27_uc010por.1_Missense_Mutation_p.S35L	NM_017847	NP_060317	Q5SWX8	ODR4_HUMAN	odorant response abnormal 4 isoform 1	35						integral to membrane	oxidoreductase activity|zinc ion binding			ovary(1)	1						TTGAAGTGTTCGTCACAAAAG	0.368000													22	4					0	0	1	0	0
CFH	3075	broad.mit.edu	37	1	196716410	196716410	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:196716410G>A	uc001gtj.3	+	22	3903	c.3663G>A	c.(3661-3663)GGG>GGA	p.G1221G		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	1221	Sushi 20.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						GTTGGGATGGGAAACTGGAGT	0.358000													34	165					0	0	1	0	0
CFHR5	81494	broad.mit.edu	37	1	196977706	196977706	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:196977706G>A	uc001gts.3	+	10	1731	c.1603G>A	c.(1603-1605)GAT>AAT	p.D535N		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	535	Sushi 9.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						AAAAACAGGGGATGCTGTTGA	0.363000													21	122					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201046165	201046165	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:201046165G>A	uc001gvv.2	-	12	1937	c.1710C>T	c.(1708-1710)ATC>ATT	p.I570I		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	570	II.|Helical; Name=S5 of repeat II; (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CGAAGATGACGATGAAGAGGA	0.547000													71	251					0	0	1	0	0
TMEM183A	92703	broad.mit.edu	37	1	202984110	202984110	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:202984110C>T	uc001gyu.1	+	4	519	c.461C>T	c.(460-462)TCC>TTC	p.S154F	TMEM183A_uc009xai.1_Missense_Mutation_p.S154F|TMEM183A_uc001gyv.1_RNA|TMEM183A_uc001gyw.1_Missense_Mutation_p.S153F|TMEM183A_uc001gyx.1_Missense_Mutation_p.S153F	NM_001079809	NP_001073277	Q8IXX5	T183A_HUMAN	transmembrane protein 183B	154						integral to membrane					0			BRCA - Breast invasive adenocarcinoma(75;0.18)			GTGAATTTTTCCCTGATTTGT	0.488000													23	95					0	0	1	0	0
SRGAP2	23380	broad.mit.edu	37	1	206634404	206634404	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:206634404C>T	uc001hdy.2	+	20	2927	c.2594C>T	c.(2593-2595)TCG>TTG	p.S865L	SRGAP2_uc010pru.1_Missense_Mutation_p.S788L	NM_015326	NP_056141	O75044	FNBP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 2	952	Potential.				axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding				0	Breast(84;0.137)					ACAATGAACTCGGCCCTGAAT	0.537000													28	117					0	0	1	0	0
CR1	1378	broad.mit.edu	37	1	207790106	207790106	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:207790106G>A	uc001hfy.2	+	33	5638	c.5498G>A	c.(5497-5499)TGG>TAG	p.W1833*	CR1_uc001hfx.2_Nonsense_Mutation_p.W2283*	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1833	Sushi 28.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						AATGGGGTTTGGAGCAGCCCT	0.527000													317	140					0	0	1	0	0
LAMB3	3914	broad.mit.edu	37	1	209791975	209791975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:209791975C>T	uc001hhg.2	-	18	3121	c.2731G>A	c.(2731-2733)GAG>AAG	p.E911K	LAMB3_uc009xco.2_Missense_Mutation_p.E911K|LAMB3_uc001hhh.2_Missense_Mutation_p.E911K	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	911	Domain I.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		TCGCTGACCTCCTGGATAGTG	0.582000													28	131					0	0	1	0	0
HHIPL2	79802	broad.mit.edu	37	1	222713473	222713473	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:222713473C>T	uc001hnh.1	-	4	1387	c.1329G>A	c.(1327-1329)GGG>GGA	p.G443G		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	443					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		GGCCCACGTCCCCACAGAATA	0.542000													56	210					0	0	1	0	0
HHIPL2	79802	broad.mit.edu	37	1	222716972	222716972	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:222716972G>A	uc001hnh.1	-	2	939	c.881C>T	c.(880-882)TCG>TTG	p.S294L		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	294					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		GTCCAGGCACGAATAATAAAT	0.468000													89	426					0	0	1	0	0
HHIPL2	79802	broad.mit.edu	37	1	222721094	222721094	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:222721094C>T	uc001hnh.1	-	1	351	c.293G>A	c.(292-294)GGA>GAA	p.G98E		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	98					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		AATGTAATCTCCACACAGCTC	0.547000													155	57					0	0	1	0	0
DISP1	84976	broad.mit.edu	37	1	223177154	223177154	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:223177154G>A	uc001hnu.1	+	8	2562	c.2415G>A	c.(2413-2415)AAG>AAA	p.K805K		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	805					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		TAAATCCCAAGAGTAAAGGGA	0.478000													45	31					0	0	1	0	0
TLR5	7100	broad.mit.edu	37	1	223285313	223285313	+	Missense_Mutation	SNP	G	A	A	rs139394912		TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:223285313G>A	uc001hnv.1	-	4	1507	c.1061C>T	c.(1060-1062)TCG>TTG	p.S354L	TLR5_uc001hnw.1_Missense_Mutation_p.S354L	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	354	Extracellular (Potential).|LRR 7.				cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		ATAGAAATTCGAACTGTAAAG	0.348000													136	49					0	0	1	0	0
C1orf65	164127	broad.mit.edu	37	1	223567862	223567862	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:223567862C>G	uc001hoa.2	+	1	1148	c.1045C>G	c.(1045-1047)CAA>GAA	p.Q349E		NM_152610	NP_689823	Q8N715	CA065_HUMAN	hypothetical protein LOC164127	349										central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0704)		GTGGAAGGAGCAACCAGAGGA	0.697000													3	21					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228430910	228430910	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:228430910C>G	uc009xez.1	+	10	3000	c.2956C>G	c.(2956-2958)CAG>GAG	p.Q986E	OBSCN_uc001hsn.2_Missense_Mutation_p.Q986E	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	986	Ig-like 10.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TGCCAAGGACCAGGTGGCACA	0.587000													108	12					0	0	1	0	0
ACTN2	88	broad.mit.edu	37	1	236908040	236908040	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:236908040G>A	uc001hyf.2	+	12	1574	c.1370G>A	c.(1369-1371)CGC>CAC	p.R457H	ACTN2_uc001hyg.2_Missense_Mutation_p.R249H|ACTN2_uc009xgi.1_Missense_Mutation_p.R457H|ACTN2_uc010pxu.1_Missense_Mutation_p.R146H|ACTN2_uc001hyh.2_Missense_Mutation_p.R145H	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	457	Spectrin 2.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			CACCAGGACCGCGTGGAGCAG	0.642000													18	307					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237895406	237895406	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:237895406C>T	uc001hyl.1	+	78	11116	c.10996C>T	c.(10996-10998)CAG>TAG	p.Q3666*	RYR2_uc010pya.1_Nonsense_Mutation_p.Q62*	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3666					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TCCTCTACATCAGCTGATCCT	0.413000													27	170					0	0	1	0	0
LOC100130331	100130331	broad.mit.edu	37	1	238090447	238090447	+	RNA	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:238090447C>T	uc010pyc.1	+	12		c.1953C>T				NR_027247				Homo sapiens mRNA; cDNA DKFZp434B2115 (from clone DKFZp434B2115).												0						TGCTGCTGATCGAGGCCTGCC	0.577000													24	179					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247588671	247588671	+	Silent	SNP	C	T	T	rs34698071	byFrequency	TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:247588671C>T	uc001icr.2	+	5	2064	c.1926C>T	c.(1924-1926)TTC>TTT	p.F642F	NLRP3_uc001ics.2_Silent_p.F642F|NLRP3_uc001icu.2_Silent_p.F642F|NLRP3_uc001icw.2_Silent_p.F642F|NLRP3_uc001icv.2_Silent_p.F642F|NLRP3_uc010pyw.1_Silent_p.F640F|NLRP3_uc001ict.1_Silent_p.F640F	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	642					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			AGGAGGACTTCGTGCAAAGGG	0.468000													23	177					0	0	1	0	0
OR2T4	127074	broad.mit.edu	37	1	248524937	248524937	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:248524937A>T	uc001ieh.1	+	1	55	c.55A>T	c.(55-57)ATG>TTG	p.M19L		NM_001004696	NP_001004696	Q8NH00	OR2T4_HUMAN	olfactory receptor, family 2, subfamily T,	19	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TTTCATCCTGATGGGACTCTT	0.488000													5	277					0	0	1	0	0
PRKCQ	5588	broad.mit.edu	37	10	6553002	6553002	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:6553002C>T	uc001ijj.1	-	3	348	c.273G>A	c.(271-273)TCG>TCA	p.S91S	PRKCQ_uc009xim.1_Silent_p.S91S|PRKCQ_uc001iji.1_Silent_p.S124S|PRKCQ_uc009xin.1_Silent_p.S55S|PRKCQ_uc010qax.1_5'UTR	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	91	C2.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						TCTCAGCCAGCGAGTAGAGCT	0.468000													56	101					0	0	1	0	0
USP6NL	9712	broad.mit.edu	37	10	11504532	11504532	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:11504532G>A	uc001ikt.3	-	15	2716	c.2395C>T	c.(2395-2397)CCA>TCA	p.P799S	USP6NL_uc001iks.1_Missense_Mutation_p.P816S	NM_014688	NP_055503	Q92738	US6NL_HUMAN	USP6 N-terminal like isoform 1	799						intracellular	Rab GTPase activator activity				0						TATCCAGATGGACTGGCATCT	0.537000													60	86					0	0	1	0	0
CUBN	8029	broad.mit.edu	37	10	17152971	17152971	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:17152971G>A	uc001ioo.2	-	9	1014	c.962C>T	c.(961-963)CCC>CTC	p.P321L		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	321	EGF-like 4; calcium-binding (Potential).				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	ACACTCAACGGGTGGAGCCAC	0.507000													39	62					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21148696	21148696	+	Silent	SNP	A	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:21148696A>C	uc001iqi.2	-	8	1141	c.744T>G	c.(742-744)CCT>CCG	p.P248P	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	248	Nebulin 7.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						CACTTTCAAGAGGATTGTAAT	0.284000													27	35					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21250658	21250658	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:21250658G>A	uc001iqk.2	-	4	654	c.300C>T	c.(298-300)ATC>ATT	p.I100I		NM_213569	NP_998734	O76041	NEBL_HUMAN	nebulette non-muscle isoform	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TGTCCGTGACGATGCTGAAGC	0.458000													55	82					0	0	1	0	0
YME1L1	10730	broad.mit.edu	37	10	27422981	27422981	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:27422981G>A	uc001iti.2	-	8	1115	c.933C>T	c.(931-933)AAC>AAT	p.N311N	YME1L1_uc001itj.2_Silent_p.N254N|YME1L1_uc010qdl.1_Silent_p.N221N|YME1L1_uc009xkv.2_RNA	NM_139312	NP_647473	Q96TA2	YMEL1_HUMAN	YME1-like 1 isoform 1	311					protein catabolic process|proteolysis	membrane|mitochondrion	ATP binding|metal ion binding|metalloendopeptidase activity|nucleoside-triphosphatase activity			ovary(1)	1						ATAAAAATGGGTTTTTTAGAA	0.328000													10	17					0	0	1	0	0
PTCHD3	374308	broad.mit.edu	37	10	27702993	27702993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:27702993C>T	uc001itu.2	-	1	305	c.187G>A	c.(187-189)GAG>AAG	p.E63K		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	63					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GCATCCTGCTCCGACGCCAGG	0.692000													64	91					0	0	1	0	0
CUL2	8453	broad.mit.edu	37	10	35349802	35349802	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:35349802C>T	uc001ixv.2	-	4	527	c.317G>A	c.(316-318)AGG>AAG	p.R106K	CUL2_uc009xma.2_Translation_Start_Site|CUL2_uc010qer.1_Missense_Mutation_p.R125K|CUL2_uc001ixw.2_Missense_Mutation_p.R106K|CUL2_uc010qes.1_Missense_Mutation_p.S106N	NM_003591	NP_003582	Q13617	CUL2_HUMAN	cullin 2	106					cell cycle arrest|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex	ubiquitin protein ligase binding			ovary(3)	3						GCACACTCACCTATATAAGCA	0.378000													40	50					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37482006	37482006	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:37482006G>A	uc001iza.1	+	26	2458	c.2359G>A	c.(2359-2361)GAT>AAT	p.D787N		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	843						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						TCCTGATAATGATGGTTTTCT	0.289000													34	52					0	0	1	0	0
FRMPD2	143162	broad.mit.edu	37	10	49409374	49409374	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:49409374G>A	uc001jgi.2	-	15	1958	c.1851C>T	c.(1849-1851)GTC>GTT	p.V617V	FRMPD2_uc001jgh.2_Silent_p.V585V|FRMPD2_uc001jgj.2_Silent_p.V595V	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	617	FERM.				tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		CTGAATCTGTGACAAATGTGT	0.458000													67	100					0	0	1	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49658879	49658879	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:49658879G>A	uc001jgt.2	-	9	1590	c.1293C>T	c.(1291-1293)TCC>TCT	p.S431S	ARHGAP22_uc001jgs.2_Silent_p.S341S|ARHGAP22_uc001jgu.2_Silent_p.S447S|ARHGAP22_uc010qgl.1_Silent_p.S388S|ARHGAP22_uc010qgm.1_Silent_p.S437S|ARHGAP22_uc001jgv.2_Silent_p.S129S|ARHGAP22_uc001jgr.2_Silent_p.S148S	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	431	Ser-rich.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						GCTGCCGGAAGGAGGACTTCC	0.697000													11	8					0	0	1	0	0
CHAT	1103	broad.mit.edu	37	10	50873054	50873054	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:50873054G>A	uc001jhz.2	+	15	2362	c.2209G>A	c.(2209-2211)GAA>AAA	p.E737K	CHAT_uc001jhv.1_Missense_Mutation_p.E619K|CHAT_uc001jhx.1_Missense_Mutation_p.E619K|CHAT_uc001jhy.1_Missense_Mutation_p.E619K|CHAT_uc001jia.2_Missense_Mutation_p.E619K|CHAT_uc010qgs.1_Intron	NM_020549	NP_065574	P28329	CLAT_HUMAN	choline acetyltransferase isoform 2	737					neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)	3		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	GGCAACAAAGGAAAAAGCCAC	0.537000													45	65					0	0	1	0	0
AGAP6	414189	broad.mit.edu	37	10	51769063	51769063	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:51769063C>T	uc001jix.3	+	8	1576	c.1178C>T	c.(1177-1179)CCC>CTC	p.P393L		NM_001077665	NP_001071133	Q5VW22	AGAP6_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	393					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			skin(1)	1						AACCCGCCCCCCTCTCCTCAT	0.522000													48	85					0	0	1	0	0
LRRTM3	347731	broad.mit.edu	37	10	68687003	68687003	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:68687003G>A	uc001jmz.1	+	2	879	c.329G>A	c.(328-330)AGA>AAA	p.R110K	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron|LRRTM3_uc001jmy.2_Missense_Mutation_p.R110K	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	110	LRR 3.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						GGAATACGCAGACTCAAAGAG	0.363000													63	82					0	0	1	0	0
DDIT4	54541	broad.mit.edu	37	10	74034734	74034734	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:74034734C>T	uc001jsx.1	+	3	689	c.487C>T	c.(487-489)CTG>TTG	p.L163L		NM_019058	NP_061931	Q9NX09	DDIT4_HUMAN	RTP801	163					apoptosis					pancreas(1)	1						CGTGGGCCAGCTGGCACTCGA	0.687000											OREG0020262	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	37	37					0	0	1	0	0
NUDT13	25961	broad.mit.edu	37	10	74886445	74886445	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:74886445G>A	uc001jtj.2	+	8	843	c.718G>A	c.(718-720)GAG>AAG	p.E240K	NUDT13_uc010qkc.1_Missense_Mutation_p.E114K|NUDT13_uc010qkd.1_Missense_Mutation_p.E43K|NUDT13_uc009xqw.2_RNA|NUDT13_uc001jtk.2_Silent_p.K202K|NUDT13_uc010qke.1_Missense_Mutation_p.E43K|NUDT13_uc001jtl.2_Intron|uc001jtm.2_5'Flank	NM_015901	NP_056985	Q86X67	NUD13_HUMAN	nudix-type motif 13	240	Nudix hydrolase.|Nudix box.						hydrolase activity|metal ion binding				0	Prostate(51;0.0119)					AAGTGTGGAAGAGACCATCCG	0.512000													37	85					0	0	1	0	0
SEC24C	9632	broad.mit.edu	37	10	75519788	75519788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:75519788C>T	uc001juw.2	+	6	673	c.494C>T	c.(493-495)TCG>TTG	p.S165L	SEC24C_uc010qkn.1_RNA|SEC24C_uc009xrj.1_Missense_Mutation_p.S23L|SEC24C_uc001jux.2_Missense_Mutation_p.S165L|SEC24C_uc010qko.1_Missense_Mutation_p.S23L|SEC24C_uc010qkp.1_Intron|SEC24C_uc010qkq.1_Intron	NM_004922	NP_004913	P53992	SC24C_HUMAN	SEC24-related protein C	165					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	protein binding|zinc ion binding			skin(2)|central_nervous_system(1)	3	Prostate(51;0.0112)					CCACCAACATCGCTGGCTTCA	0.542000													80	97					0	0	1	0	0
ZNF503	84858	broad.mit.edu	37	10	77161015	77161015	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:77161015G>T	uc001jxg.2	-	1	499	c.163C>A	c.(163-165)CCT>ACT	p.P55T	C10orf41_uc010qlf.1_5'Flank|C10orf41_uc010qlg.1_5'Flank	NM_032772	NP_116161	Q96F45	ZN503_HUMAN	zinc finger protein 503	55					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1	all_cancers(46;0.105)|all_epithelial(25;0.00449)|Prostate(51;0.0112)|Ovarian(15;0.088)					TGCACAAAAGGCTTGGTGCTG	0.607000													3	10					0.00024832	0.000248988	1	1	0
IFIT1	3434	broad.mit.edu	37	10	91162512	91162512	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:91162512C>T	uc001kgi.2	+	2	628	c.480C>T	c.(478-480)GCC>GCT	p.A160A	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron|IFIT1_uc009xtt.2_Silent_p.A160A|IFIT1_uc001kgj.2_Silent_p.A129A	NM_001548	NP_001539	P09914	IFIT1_HUMAN	interferon-induced protein with	160	TPR 3.				cellular response to exogenous dsRNA|intracellular transport of viral proteins in host cell|negative regulation of defense response to virus by host|negative regulation of helicase activity|negative regulation of protein binding|negative regulation of viral genome replication|positive regulation of viral genome replication|response to virus|type I interferon-mediated signaling pathway	cytoplasm	protein binding				0						ATGAACGGGCCAAGGCCTGCT	0.483000													46	59					0	0	1	0	0
SLC16A12	387700	broad.mit.edu	37	10	91196032	91196032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:91196032C>T	uc001kgm.2	-	7	1374	c.983G>A	c.(982-984)GGA>GAA	p.G328E	SLC16A12_uc001kgl.2_5'UTR	NM_213606	NP_998771	Q6ZSM3	MOT12_HUMAN	solute carrier family 16 (monocarboxylic acid	328	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			skin(1)	1						CCCATCCATTCCCACGGCAAA	0.458000													41	48					0	0	1	0	0
PLCE1	51196	broad.mit.edu	37	10	95790940	95790940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:95790940G>A	uc001kjk.2	+	2	771	c.137G>A	c.(136-138)CGA>CAA	p.R46Q	PLCE1_uc010qnx.1_Missense_Mutation_p.R46Q	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	46					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				ACTGTCAGACGAAGTGGGGAG	0.433000													23	31					0	0	1	0	0
SMC3	9126	broad.mit.edu	37	10	112333500	112333500	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:112333500T>C	uc001kze.2	+	3	253	c.127T>C	c.(127-129)TAT>CAT	p.Y43H		NM_005445	NP_005436	Q9UQE7	SMC3_HUMAN	structural maintenance of chromosomes 3	43					cell division|DNA mediated transformation|DNA repair|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic spindle organization|negative regulation of DNA endoreduplication|signal transduction|sister chromatid cohesion	basement membrane|chromatin|chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nuclear matrix|nucleoplasm|spindle pole	ATP binding|dynein binding|microtubule motor activity|protein heterodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(234;0.0848)|Lung NSC(174;0.238)		Epithelial(162;0.00206)|all cancers(201;0.0227)|BRCA - Breast invasive adenocarcinoma(275;0.127)		TAACTTTTTTTATGGTAGGTG	0.269000													21	23					0	0	1	0	0
PLEKHA1	59338	broad.mit.edu	37	10	124189437	124189437	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:124189437C>T	uc001lge.1	+	12	1321	c.1198C>T	c.(1198-1200)CCG>TCG	p.P400S	PLEKHA1_uc001lgf.1_3'UTR|PLEKHA1_uc001lgg.1_Missense_Mutation_p.P400S	NM_001001974	NP_001001974	Q9HB21	PKHA1_HUMAN	pleckstrin homology domain containing, family A	400					B cell receptor signaling pathway|cellular response to hydrogen peroxide|establishment of protein localization|negative regulation of protein kinase B signaling cascade|phosphatidylinositol 3-kinase cascade|ruffle organization	cytoplasm|nucleus|ruffle membrane	PDZ domain binding|phosphatidylinositol-3,4-bisphosphate binding			kidney(1)	1		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TGCGAGCCTTCCGGTCAGTGA	0.507000													36	38					0	0	1	0	0
PTPRE	5791	broad.mit.edu	37	10	129867989	129867989	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:129867989G>A	uc001lkb.2	+	13	1320	c.1041G>A	c.(1039-1041)GTG>GTA	p.V347V	PTPRE_uc009yat.2_Silent_p.V358V|PTPRE_uc009yau.2_Silent_p.V347V|PTPRE_uc001lkd.2_Silent_p.V289V|PTPRE_uc010quq.1_Silent_p.V248V	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E	347	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				CCTTCATTGTGATCGATGCCA	0.552000											OREG0020623	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	101	146					0	0	1	0	0
LOC653544	653544	broad.mit.edu	37	10	135491125	135491125	+	Missense_Mutation	SNP	G	A	A	rs140402194	by1000genomes	TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr10:135491125G>A	uc010qvi.1	+	1	847	c.736G>A	c.(736-738)GCG>ACG	p.A246T		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	246						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CCACACCGGCGCGTGGGGAAC	0.781000													4	35					0	0	1	0	0
MUC6	4588	broad.mit.edu	37	11	1030958	1030958	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:1030958G>A	uc001lsw.2	-	6	724	c.673C>T	c.(673-675)CAG>TAG	p.Q225*		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	225	VWFD 1.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TGCTGGGCCTGCCGGACGTGG	0.657000													7	17					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1158055	1158055	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:1158055C>T	uc009ycr.1	+	10	1161	c.1035C>T	c.(1033-1035)CAC>CAT	p.H345H		NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		TGCAGTACCACGAGTGCCGCT	0.667000													15	72					0	0	1	0	0
ZNF195	7748	broad.mit.edu	37	11	3380508	3380508	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:3380508G>A	uc001lxt.2	-	6	1908	c.1730C>T	c.(1729-1731)CCC>CTC	p.P577L	uc001lxr.2_5'Flank|ZNF195_uc001lxv.2_Missense_Mutation_p.P554L|ZNF195_uc001lxs.2_Missense_Mutation_p.P505L|ZNF195_uc010qxr.1_Missense_Mutation_p.P558L|ZNF195_uc009ydz.2_Missense_Mutation_p.P532L|ZNF195_uc001lxu.2_Missense_Mutation_p.P509L	NM_001130520	NP_001123992	O14628	ZN195_HUMAN	zinc finger protein 195 isoform 1	577					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Medulloblastoma(188;0.00106)|Breast(177;0.00328)|all_neural(188;0.00681)|Ovarian(85;0.00965)		BRCA - Breast invasive adenocarcinoma(625;0.0361)|LUSC - Lung squamous cell carcinoma(625;0.2)		ACATTTGTAGGGTTTCTCTCC	0.398000													33	131					0	0	1	0	0
TRIM21	6737	broad.mit.edu	37	11	4407076	4407076	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:4407076G>A	uc001lyy.1	-	7	980	c.867C>T	c.(865-867)ATC>ATT	p.I289I		NM_003141	NP_003132	P19474	RO52_HUMAN	tripartite motif protein 21	289	B30.2/SPRY.				cell cycle|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein deubiquitination|positive regulation of cell cycle|protein autoubiquitination|protein destabilization|protein monoubiquitination|protein polyubiquitination|protein trimerization	cytoplasmic mRNA processing body|nucleus	DNA binding|protein binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|lung(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;2.08e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0851)|LUSC - Lung squamous cell carcinoma(625;0.194)		GATCCAGAGTGATGTGGACTG	0.527000													23	27					0	0	1	0	0
OR52M1	119772	broad.mit.edu	37	11	4566851	4566851	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:4566851G>C	uc010qyf.1	+	1	431	c.431G>C	c.(430-432)GGT>GCT	p.G144A		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	144	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACAGTGGTGGGTCGTTTGGGG	0.522000													76	78					0	0	1	0	0
OR51E1	143503	broad.mit.edu	37	11	4674527	4674527	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:4674527C>T	uc001lzi.3	+	2	915	c.771C>T	c.(769-771)TTC>TTT	p.F257F		NM_152430	NP_689643	Q8TCB6	O51E1_HUMAN	olfactory receptor, family 51, subfamily E,	256	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(3)|pancreas(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;7.37e-14)|GBM - Glioblastoma multiforme(2;2.85e-05)|BRCA - Breast invasive adenocarcinoma(625;0.00222)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATGTACCTTTCATTGGATTGT	0.507000													94	125					0	0	1	0	0
OR51E2	81285	broad.mit.edu	37	11	4703277	4703277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:4703277C>T	uc001lzk.2	-	2	909	c.665G>A	c.(664-666)CGA>CAA	p.R222Q		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	222	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		CAGAACCGTTCGTATTATCAG	0.488000													77	100					0	0	1	0	0
HBG1	3047	broad.mit.edu	37	11	5269676	5269676	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:5269676G>A	uc001mah.1	-	3	410	c.357C>T	c.(355-357)TTC>TTT	p.F119F	HBG2_uc001mai.1_Silent_p.F119F	NM_000559	NP_000550	P69891	HBG1_HUMAN	A-gamma globin	119					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity|protein binding				0		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATTCTTTGCCGAAATGGATTG	0.527000													44	74					0	0	1	0	0
OR51B6	390058	broad.mit.edu	37	11	5373410	5373410	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:5373410G>A	uc010qzb.1	+	1	673	c.673G>A	c.(673-675)GGC>AGC	p.G225S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GACTGTCATGGGCATTGGTTC	0.428000													88	75					0	0	1	0	0
TRIM6	117854	broad.mit.edu	37	11	5632103	5632103	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:5632103C>T	uc001mbc.1	+	8	1130	c.998C>T	c.(997-999)CCT>CTT	p.P333L	HBG2_uc001mak.1_Intron|TRIM6-TRIM34_uc001mbf.2_Intron|TRIM6_uc009yeo.1_Missense_Mutation_p.P307L|TRIM6_uc010qzj.1_Missense_Mutation_p.P158L|TRIM6_uc001mbe.2_Missense_Mutation_p.P158L|TRIM6_uc010qzk.1_Missense_Mutation_p.P158L|TRIM6_uc010qzl.1_Missense_Mutation_p.P158L|TRIM6_uc001mbd.2_Missense_Mutation_p.P361L|TRIM6_uc001mbg.1_Missense_Mutation_p.P158L|TRIM6_uc009yep.1_3'UTR	NM_058166	NP_477514	Q9C030	TRIM6_HUMAN	tripartite motif-containing 6 isoform 2	333	B30.2/SPRY.				protein trimerization	cytoplasm	zinc ion binding				0		Lung NSC(207;2.23e-07)|all_lung(207;1.81e-06)|Medulloblastoma(188;0.00225)|Breast(177;0.0101)|all_neural(188;0.0212)		Epithelial(150;1.12e-45)|BRCA - Breast invasive adenocarcinoma(625;0.00101)|LUSC - Lung squamous cell carcinoma(625;0.192)		GTATCTGGACCTTCCTGTCTG	0.483000													66	90					0	0	1	0	0
TRIM5	85363	broad.mit.edu	37	11	5686459	5686459	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:5686459G>A	uc001mbm.1	-	8	1319	c.1062C>T	c.(1060-1062)ATC>ATT	p.I354I	TRIM78P_uc009yer.2_RNA|TRIM5_uc001mbl.1_RNA|TRIM5_uc001mbn.2_Intron|TRIM5_uc001mbo.2_Intron|TRIM5_uc001mbp.2_3'UTR	NM_033034	NP_149023	Q9C035	TRIM5_HUMAN	tripartite motif protein TRIM5 isoform alpha	354	B30.2/SPRY.				interspecies interaction between organisms|protein trimerization|response to virus	cytoplasm|cytoplasmic mRNA processing body	ligase activity|protein binding|protein homodimerization activity|zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)|Lung NSC(207;0.138)|all_lung(207;0.221)		Epithelial(150;7.21e-09)|BRCA - Breast invasive adenocarcinoma(625;0.139)		TCCCTGATGTGATACTTTGAG	0.453000													138	175					0	0	1	0	0
OR52N5	390075	broad.mit.edu	37	11	5799460	5799460	+	Silent	SNP	A	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:5799460A>T	uc010qzn.1	-	1	405	c.405T>A	c.(403-405)ATT>ATA	p.I135I	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001922	NP_001001922	Q8NH56	O52N5_HUMAN	olfactory receptor, family 52, subfamily N,	135	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		AAGGGTAGCAAATGGCTACAT	0.507000													79	81					0	0	1	0	0
OR52E4	390081	broad.mit.edu	37	11	5906360	5906360	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:5906360C>A	uc010qzs.1	+	1	838	c.838C>A	c.(838-840)CTG>ATG	p.L280M	TRIM5_uc001mbq.1_Intron	NM_001005165	NP_001005165	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E,	280	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTTGGCTAACCTGTATGTGGT	0.398000													30	97					2.85442e-18	2.89325e-18	1	1	0
OR5P2	120065	broad.mit.edu	37	11	7818360	7818360	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:7818360G>T	uc001mfp.1	-	1	130	c.130C>A	c.(130-132)CTT>ATT	p.L44I		NM_153444	NP_703145	Q8WZ92	OR5P2_HUMAN	olfactory receptor, family 5, subfamily P,	44	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		ATTCTGATAAGAATAATTATG	0.423000													47	34					1.51943e-15	1.53384e-15	1	1	0
C11orf16	56673	broad.mit.edu	37	11	8947376	8947376	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:8947376C>T	uc001mhb.3	-	5	962	c.838G>A	c.(838-840)GGC>AGC	p.G280S	C11orf16_uc001mhc.3_Missense_Mutation_p.G280S	NM_020643	NP_065694	Q9NQ32	CK016_HUMAN	hypothetical protein LOC56673	280										upper_aerodigestive_tract(1)|pancreas(1)	2				Epithelial(150;4.11e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0234)		CAGAGGCAGCCCTGGCACAGT	0.602000													150	150					0	0	1	0	0
SBF2	81846	broad.mit.edu	37	11	9861155	9861155	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:9861155G>A	uc001mib.2	-	26	3483	c.3345C>T	c.(3343-3345)TTC>TTT	p.F1115F	SBF2_uc001mif.3_Silent_p.F871F|uc001mig.2_Intron	NM_030962	NP_112224	Q86WG5	MTMRD_HUMAN	SET binding factor 2	1115	Myotubularin phosphatase.				myelination	cytoplasm|membrane	phosphatase activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				all cancers(16;2.88e-11)|Epithelial(150;3.61e-10)|BRCA - Breast invasive adenocarcinoma(625;0.00887)		GATAGTCTCTGAAACAAGCTT	0.463000													128	151					0	0	1	0	0
MICAL2	9645	broad.mit.edu	37	11	12183807	12183807	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:12183807C>T	uc001mjz.2	+	3	393	c.105C>T	c.(103-105)CTC>CTT	p.L35L	MICAL2_uc010rch.1_Silent_p.L35L|MICAL2_uc001mjy.2_Silent_p.L35L|MICAL2_uc001mka.2_Silent_p.L35L|MICAL2_uc010rci.1_Silent_p.L35L|MICAL2_uc001mkb.2_Silent_p.L35L|MICAL2_uc001mkc.2_Silent_p.L35L	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	35						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		TCAACATTCTCACACGACACC	0.527000													57	55					0	0	1	0	0
DBX1	120237	broad.mit.edu	37	11	20178201	20178201	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:20178201G>A	uc001mpw.1	-	4	708	c.708C>T	c.(706-708)TCC>TCT	p.S236S		NM_001029865	NP_001025036	A6NMT0	DBX1_HUMAN	developing brain homeobox 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGCGGGGAGTGGAGTCGGGTG	0.647000													107	129					0	0	1	0	0
NELL1	4745	broad.mit.edu	37	11	21581792	21581792	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:21581792A>G	uc001mqe.2	+	17	1997	c.1844A>G	c.(1843-1845)AAC>AGC	p.N615S	NELL1_uc001mqf.2_Missense_Mutation_p.N568S|NELL1_uc009yid.2_Missense_Mutation_p.N643S|NELL1_uc010rdo.1_Missense_Mutation_p.N558S|NELL1_uc010rdp.1_Missense_Mutation_p.N328S|NELL1_uc001mqh.2_Intron	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	615	EGF-like 6; calcium-binding (Potential).				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						GCCTGCATCAACCTGGCAGGG	0.537000													62	192					0	0	1	0	0
Unknown	0	broad.mit.edu	37	11	31128392	31128392	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:31128392G>A	uc009yjk.1	-	1	116	c.47C>T	c.(46-48)TCG>TTG	p.S16L	uc009yjl.1_5'UTR|DCDC1_uc001msu.1_Missense_Mutation_p.S187L					RecName: Full=Doublecortin domain-containing protein 5;																		ATTCTTCAGCGAAAGTGGATT	0.428000											OREG0020856	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	53	66					0	0	1	0	0
ELP4	26610	broad.mit.edu	37	11	31669375	31669375	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:31669375C>T	uc001mtb.2	+	8	1049	c.1014C>T	c.(1012-1014)AAC>AAT	p.N338N	ELP4_uc001mta.1_RNA|ELP4_uc001mtc.2_Silent_p.N338N|ELP4_uc010rdz.1_Silent_p.N339N	NM_019040	NP_061913	Q96EB1	ELP4_HUMAN	elongation protein 4 homolog	338					histone acetylation|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|Elongator holoenzyme complex|transcription elongation factor complex	phosphorylase kinase regulator activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|prostate(1)	3	Lung SC(675;0.225)					GAGAAACTAACCCATTGTATA	0.403000													20	30					0	0	1	0	0
C11orf41	25758	broad.mit.edu	37	11	33667274	33667274	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:33667274C>T	uc001mup.3	+	16	4703	c.4579C>T	c.(4579-4581)CCT>TCT	p.P1527S		NM_012194	NP_036326	Q6ZVL6	CK041_HUMAN	hypothetical protein LOC25758	1521						integral to membrane				ovary(2)	2						TGACAGAGTTCCTGAGCCCCG	0.532000													118	184					0	0	1	0	0
RAG1	5896	broad.mit.edu	37	11	36596731	36596731	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:36596731C>T	uc001mwu.3	+	2	2001	c.1877C>T	c.(1876-1878)TCA>TTA	p.S626L	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	626					histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				GTCCGTTTTTCATTCACAATC	0.458000									Familial_Hemophagocytic_Lymphohistiocytosis				57	60					0	0	1	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136444	40136444	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:40136444C>T	uc001mxa.1	-	2	3363	c.1399G>A	c.(1399-1401)GAT>AAT	p.D467N	LRRC4C_uc001mxc.1_Missense_Mutation_p.D463N|LRRC4C_uc001mxd.1_Missense_Mutation_p.D463N|LRRC4C_uc001mxb.1_Missense_Mutation_p.D463N	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	467					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				CGTGCCTCATCCTGAGACGGT	0.512000													58	68					0	0	1	0	0
EXT2	2132	broad.mit.edu	37	11	44130794	44130794	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:44130794C>T	uc001mxz.2	+	3	921	c.587C>T	c.(586-588)CCC>CTC	p.P196L	EXT2_uc010rfo.1_Missense_Mutation_p.P224L|EXT2_uc001mxy.2_Missense_Mutation_p.P209L|EXT2_uc009ykt.2_Missense_Mutation_p.P196L|EXT2_uc001mya.2_Missense_Mutation_p.P229L	NM_207122	NP_997005	Q93063	EXT2_HUMAN	exostosin 2 isoform 2	196	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction	Golgi membrane|integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity			lung(2)|breast(2)|skin(1)	5						CCTGGAGGTCCCCCAGATTAT	0.433000			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses				92	108					0	0	1	0	0
AMBRA1	55626	broad.mit.edu	37	11	46564027	46564027	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:46564027G>A	uc010rgu.1	-	7	1900	c.1540C>T	c.(1540-1542)CAG>TAG	p.Q514*	AMBRA1_uc010rgt.1_Nonsense_Mutation_p.Q80*|AMBRA1_uc009ylc.1_Nonsense_Mutation_p.Q514*|AMBRA1_uc001ncu.1_Nonsense_Mutation_p.Q424*|AMBRA1_uc001ncv.2_Nonsense_Mutation_p.Q424*|AMBRA1_uc001ncw.2_Nonsense_Mutation_p.Q424*|AMBRA1_uc001ncx.2_Nonsense_Mutation_p.Q514*	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	514					autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		TCCAGCTCCTGAAGCCGGTCA	0.552000													71	55					0	0	1	0	0
OR4B1	119765	broad.mit.edu	37	11	48239109	48239109	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:48239109G>A	uc010rhs.1	+	1	748	c.748G>A	c.(748-750)GGA>AGA	p.G250R		NM_001005470	NP_001005470	Q8NGF8	OR4B1_HUMAN	olfactory receptor, family 4, subfamily B,	250	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|pancreas(1)	4						CTTGTTTTTTGGACCTGCTAT	0.478000													49	59					0	0	1	0	0
OR5L2	26338	broad.mit.edu	37	11	55594854	55594854	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:55594854C>T	uc001nhy.1	+	1	160	c.160C>T	c.(160-162)CGG>TGG	p.R54W		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	54	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				GGTCAGCTCTCGGCTCCACAC	0.473000										HNSCC(27;0.073)			157	290					0	0	1	0	0
OR8J3	81168	broad.mit.edu	37	11	55904317	55904317	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:55904317C>T	uc010riz.1	-	1	878	c.878G>A	c.(877-879)AGG>AAG	p.R293K		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					ATCATTATTCCTCAGGCTGTA	0.358000													32	78					0	0	1	0	0
OR5M10	390167	broad.mit.edu	37	11	56344834	56344834	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:56344834G>A	uc001niz.1	-	1	364	c.364C>T	c.(364-366)CGC>TGC	p.R122C		NM_001004741	NP_001004741	Q6IEU7	OR5MA_HUMAN	olfactory receptor, family 5, subfamily M,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GCTACATAGCGATCCAATGCC	0.453000													50	125					0	0	1	0	0
OR5AK2	390181	broad.mit.edu	37	11	56756888	56756888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:56756888C>T	uc010rjp.1	+	1	500	c.500C>T	c.(499-501)TCC>TTC	p.S167F		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						TGTTCACTGTCCTTCTGCAAG	0.418000													203	154					0	0	1	0	0
OR10Q1	219960	broad.mit.edu	37	11	57995630	57995630	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:57995630G>A	uc010rkd.1	-	1	718	c.718C>T	c.(718-720)CGC>TGC	p.R240C		NM_001004471	NP_001004471	Q8NGQ4	O10Q1_HUMAN	olfactory receptor, family 10, subfamily Q,	240	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(21;0.0589)				AAGGCCCGGCGGCGGCCCTCG	0.632000													53	38					0	0	1	0	0
OR10W1	81341	broad.mit.edu	37	11	58034854	58034854	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:58034854G>A	uc001nmq.1	-	1	879	c.477C>T	c.(475-477)TTC>TTT	p.F159F		NM_207374	NP_997257	Q8NGF6	O10W1_HUMAN	olfactory receptor, family 10, subfamily W,	159	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				GAGCCTGGCAGAATGGCAGAG	0.493000													32	18					0	0	1	0	0
OSBP	5007	broad.mit.edu	37	11	59348978	59348978	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:59348978C>T	uc001noc.1	-	10	2208	c.1728G>A	c.(1726-1728)AAG>AAA	p.K576K	OSBP_uc009ymr.1_RNA	NM_002556	NP_002547	P22059	OSBP1_HUMAN	oxysterol binding protein	576					lipid transport	Golgi membrane	oxysterol binding			large_intestine(1)	1		all_epithelial(135;0.000236)		BRCA - Breast invasive adenocarcinoma(625;0.00607)|LUSC - Lung squamous cell carcinoma(625;0.207)		TGGTAACTTTCTTCCAAGTGT	0.393000													49	121					0	0	1	0	0
CD6	923	broad.mit.edu	37	11	60777108	60777108	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:60777108C>T	uc001nqq.2	+	5	1069	c.846C>T	c.(844-846)TTC>TTT	p.F282F	CD6_uc009yni.2_Intron|CD6_uc009ynj.2_Intron|CD6_uc001nqp.2_Silent_p.F282F|CD6_uc001nqr.2_Silent_p.F282F|CD6_uc001nqs.2_RNA|CD6_uc001nqt.2_Silent_p.F282F	NM_006725	NP_006716	P30203	CD6_HUMAN	CD6 molecule precursor	282	SRCR 3.|Extracellular (Potential).				cell adhesion	cell surface|integral to plasma membrane	scavenger receptor activity			pancreas(1)	1						AGGTACACTTCCGAGGGGTCT	0.642000													82	52					0	0	1	0	0
HRASLS5	117245	broad.mit.edu	37	11	63233637	63233637	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:63233637C>T	uc001nwy.2	-	5	866	c.692G>A	c.(691-693)GGG>GAG	p.G231E	HRASLS5_uc001nwz.2_Missense_Mutation_p.G221E|HRASLS5_uc010rmq.1_Missense_Mutation_p.G231E|HRASLS5_uc009yos.2_RNA	NM_054108	NP_473449	Q96KN8	HRSL5_HUMAN	HRAS-like suppressor family, member 5 isoform 1	231										ovary(1)	1						CTCACAGTTCCCTTCAATCAG	0.512000													132	70					0	0	1	0	0
MARK2	2011	broad.mit.edu	37	11	63672440	63672440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:63672440C>T	uc001nxw.2	+	16	2438	c.1859C>T	c.(1858-1860)CCC>CTC	p.P620L	MARK2_uc001nxx.2_Missense_Mutation_p.P566L|MARK2_uc001nxy.2_Missense_Mutation_p.P565L|MARK2_uc001nxv.3_Missense_Mutation_p.P565L|MARK2_uc001nxz.3_Missense_Mutation_p.P586L|MARK2_uc009yoy.2_Missense_Mutation_p.P540L	NM_001039469	NP_001034558	Q7KZI7	MARK2_HUMAN	MAP/microtubule affinity-regulating kinase 2	620					cell differentiation|establishment or maintenance of epithelial cell apical/basal polarity|intracellular protein kinase cascade|multicellular organismal development|response to oxidative stress	plasma membrane	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)|ovary(1)|lung(1)	3						CCAGCCTCTCCCTCTGGCCAC	0.637000													100	200					0	0	1	0	0
EHD1	10938	broad.mit.edu	37	11	64622297	64622297	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:64622297G>A	uc001obu.1	-	5	1368	c.1113C>T	c.(1111-1113)TTC>TTT	p.F371F	EHD1_uc001obt.1_Silent_p.F54F|EHD1_uc001obv.1_Silent_p.F371F|EHD1_uc010rnq.1_Silent_p.F385F	NM_006795	NP_006786	Q9H4M9	EHD1_HUMAN	EH-domain containing 1	371					blood coagulation|cholesterol homeostasis|endocytic recycling|intracellular protein transport|low-density lipoprotein particle clearance|positive regulation of cholesterol storage|protein homooligomerization	early endosome membrane|lipid particle|plasma membrane|platelet dense tubular network membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|protein binding				0						TCAGCGCCTGGAACTTGCTGA	0.637000													377	221					0	0	1	0	0
RIN1	9610	broad.mit.edu	37	11	66100731	66100731	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:66100731G>A	uc001ohn.1	-	9	2000	c.1873C>T	c.(1873-1875)CAG>TAG	p.Q625*	RIN1_uc010roy.1_Nonsense_Mutation_p.Q256*|RIN1_uc009yrd.1_Nonsense_Mutation_p.Q318*|RIN1_uc010roz.1_Nonsense_Mutation_p.Q520*|RIN1_uc010rpa.1_Nonsense_Mutation_p.Q459*	NM_004292	NP_004283	Q13671	RIN1_HUMAN	ras inhibitor RIN1	625	Ras and 14-3-3 protein binding region.|Ras-associating.				endocytosis|signal transduction	cytoplasm|cytoskeleton|plasma membrane	GTPase activator activity|protein binding			lung(2)|breast(1)	3						CCTGTTACCTGGAAGCAGTGG	0.567000													100	57					0	0	1	0	0
NPAS4	266743	broad.mit.edu	37	11	66192208	66192208	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:66192208C>T	uc001ohx.1	+	7	2023	c.1847C>T	c.(1846-1848)CCA>CTA	p.P616L	NPAS4_uc010rpc.1_Missense_Mutation_p.P406L	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	616					transcription, DNA-dependent		DNA binding|signal transducer activity				0						GAGGCCTCTCCAGTCAAGCAG	0.587000													155	93					0	0	1	0	0
ACTN3	89	broad.mit.edu	37	11	66322680	66322680	+	Splice_Site	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:66322680G>A	uc001oio.1	+	6	654	c.636_splice	c.e6+1	p.K212_splice	ACTN3_uc010rpi.1_Splice_Site	NM_001104	NP_001095	Q08043	ACTN3_HUMAN	actinin, alpha 3						focal adhesion assembly|muscle filament sliding|regulation of apoptosis	actin filament|cytosol|focal adhesion|pseudopodium	actin binding|calcium ion binding|integrin binding|protein homodimerization activity|structural constituent of muscle				0						ACTGCGAAAGGTAGAGGCCCC	0.617000													45	30					0	0	1	0	0
PC	5091	broad.mit.edu	37	11	66631255	66631255	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:66631255C>T	uc001ojn.1	-	10	1407	c.1358G>A	c.(1357-1359)CGA>CAA	p.R453Q	PC_uc001ojo.1_Missense_Mutation_p.R453Q|PC_uc001ojp.1_Missense_Mutation_p.R453Q	NM_022172	NP_071504	P11498	PYC_HUMAN	pyruvate carboxylase precursor	453	Biotin carboxylation.				gluconeogenesis|lipid biosynthetic process	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|pyruvate carboxylase activity			ovary(2)|lung(1)|kidney(1)	4		Melanoma(852;0.0525)		Lung(977;0.153)|LUSC - Lung squamous cell carcinoma(976;0.227)	Biotin(DB00121)|Pyruvic acid(DB00119)	CTTCACACCTCGGACGCGGAA	0.662000													69	135					0	0	1	0	0
SYT12	91683	broad.mit.edu	37	11	66807384	66807384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:66807384G>A	uc009yrl.2	+	4	561	c.331G>A	c.(331-333)GGG>AGG	p.G111R	SYT12_uc001oju.2_Missense_Mutation_p.G111R	NM_177963	NP_808878	Q8IV01	SYT12_HUMAN	synaptotagmin XII	111	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane				ovary(1)	1						CAGTGAACTGGGGCCTCTGGA	0.647000													58	114					0	0	1	0	0
MTL5	9633	broad.mit.edu	37	11	68518115	68518116	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:68518115_68518116GG>AA	uc001ooc.2	-	2	153_154	c.13_14CC>TT	c.(13-15)CCT>TTT	p.P5F	MTL5_uc001ood.1_Missense_Mutation_p.P5F|MTL5_uc009ysi.1_Missense_Mutation_p.P5F|MTL5_uc001ooe.2_Missense_Mutation_p.P5F	NM_004923	NP_004914	Q9Y4I5	MTL5_HUMAN	metallothionein-like 5, testis-specific isoform	5					cell differentiation|cellular metal ion homeostasis|multicellular organismal development|response to metal ion|spermatogenesis	cytoplasm|nucleus|soluble fraction	metal ion binding			ovary(2)|breast(1)	3	Esophageal squamous(3;4.37e-12)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.185)			GCCCGGCAGAGGGCCCTCCTCC	0.668000													23	1					0	0	1	0	0
P4HA3	283208	broad.mit.edu	37	11	74013522	74013522	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:74013522G>A	uc001ouz.2	-	3	502	c.459C>T	c.(457-459)GGC>GGT	p.G153G	P4HA3_uc001ouy.3_RNA|P4HA3_uc010rrj.1_Silent_p.G153G	NM_182904	NP_878907	Q7Z4N8	P4HA3_HUMAN	prolyl 4-hydroxylase, alpha III subunit	153						endoplasmic reticulum lumen	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			skin(1)	1	Breast(11;2.31e-05)					CTCGGGCCAGGCCTTTCACAT	0.562000													212	17					0	0	1	0	0
MYO7A	4647	broad.mit.edu	37	11	76903241	76903241	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:76903241C>T	uc001oyb.2	+	31	4342	c.4070C>T	c.(4069-4071)CCC>CTC	p.P1357L	MYO7A_uc010rsm.1_Missense_Mutation_p.P1346L|MYO7A_uc001oyc.2_Missense_Mutation_p.P1357L|MYO7A_uc009yus.1_RNA|MYO7A_uc009yut.1_Missense_Mutation_p.P568L	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	1357	FERM 1.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						TGGCACAGCCCCTCCGAGGAC	0.622000											OREG0021258	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	76	216					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92087538	92087538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:92087538G>A	uc001pdj.3	+	1	2277	c.2260G>A	c.(2260-2262)GAC>AAC	p.D754N		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	754	Extracellular (Potential).|Cadherin 7.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CTATGATGCCGACTCTGGCTT	0.398000										TCGA Ovarian(4;0.039)			114	7					0	0	1	0	0
HEPHL1	341208	broad.mit.edu	37	11	93837757	93837757	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:93837757G>A	uc001pep.2	+	16	2903	c.2746G>A	c.(2746-2748)GGA>AGA	p.G916R	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	916	Extracellular (Potential).|Plastocyanin-like 6.				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				GAATGAAAAGGGAAGAAGAAG	0.348000													24	6					0	0	1	0	0
CNTN5	53942	broad.mit.edu	37	11	99690452	99690452	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:99690452C>T	uc001pga.2	+	4	572	c.233C>T	c.(232-234)TCC>TTC	p.S78F	CNTN5_uc009ywv.1_Missense_Mutation_p.S78F|CNTN5_uc001pfz.2_Missense_Mutation_p.S78F|CNTN5_uc001pgb.2_Intron	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	78					cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		AATTATTATTCCCCCATCAAT	0.343000													9	5					0	0	1	0	0
MMP10	4319	broad.mit.edu	37	11	102649474	102649474	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:102649474C>T	uc001phg.1	-	4	525	c.503G>A	c.(502-504)GGA>GAA	p.G168E		NM_002425	NP_002416	P09238	MMP10_HUMAN	matrix metalloproteinase 10 preproprotein	168					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			kidney(1)|lung(1)|breast(1)|central_nervous_system(1)	4	all_epithelial(12;0.00961)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0303)|Lung(13;0.0828)|all cancers(10;0.116)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0145)		GTAAAAGTCTCCATGTTCTGA	0.348000													57	5					0	0	1	0	0
MMP13	4322	broad.mit.edu	37	11	102825329	102825329	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:102825329C>T	uc001phl.2	-	3	397	c.369G>A	c.(367-369)GTG>GTA	p.V123V		NM_002427	NP_002418	P45452	MMP13_HUMAN	matrix metalloproteinase 13 preproprotein	123					collagen catabolic process|proteolysis	extracellular space	metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0144)		GGGTGTAATTCACAATTCTAT	0.333000													41	4					0	0	1	0	0
SDHD	6392	broad.mit.edu	37	11	111965693	111965693	+	Nonstop_Mutation	SNP	G	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:111965693G>T	uc001pmz.2	+	4	540	c.479G>T	c.(478-480)TGA>TTA	p.*160L		NM_003002	NP_002993	O14521	DHSD_HUMAN	succinate dehydrogenase complex, subunit D	160					respiratory electron transport chain|transport|tricarboxylic acid cycle	integral to membrane|mitochondrial respiratory chain complex II	electron carrier activity|heme binding|succinate dehydrogenase activity|ubiquinone binding				0		all_cancers(61;5.7e-14)|all_epithelial(67;3.4e-08)|Melanoma(852;8.81e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;6.13e-07)|BRCA - Breast invasive adenocarcinoma(274;6.17e-07)|all cancers(92;1.05e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0515)	Succinic acid(DB00139)	TGGAAGCTCTGACCTTTTTGA	0.423000			Mis|N|F|S			paraganglioma|pheochromocytoma			Familial_Paragangliomas|Carney-Stratakis_syndrome|Cowden_syndrome				34	24					1.21353e-23	1.2334e-23	1	1	0
TTC12	54970	broad.mit.edu	37	11	113210126	113210126	+	Silent	SNP	T	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:113210126T>A	uc001pnu.2	+	10	861	c.756T>A	c.(754-756)CTT>CTA	p.L252L	TTC12_uc001pnv.2_Silent_p.L258L|TTC12_uc001pnw.2_RNA|TTC12_uc001pnx.2_Silent_p.L102L	NM_017868	NP_060338	Q9H892	TTC12_HUMAN	tetratricopeptide repeat domain 12	252							binding			pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4		all_cancers(61;2.73e-16)|all_epithelial(67;8.64e-10)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.183)|Renal(330;0.187)		BRCA - Breast invasive adenocarcinoma(274;5.3e-06)|Epithelial(105;8.37e-05)|all cancers(92;0.000694)		TGGAGACCCTTTCCAAGCCTG	0.483000													164	17					0	0	1	0	0
HTR3A	3359	broad.mit.edu	37	11	113849954	113849954	+	Splice_Site	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:113849954G>A	uc010rxb.1	+	3	471	c.238_splice	c.e3-1	p.D80_splice	HTR3A_uc010rxa.1_Splice_Site_p.D80_splice|HTR3A_uc009yyx.2_Splice_Site|HTR3A_uc010rxc.1_Splice_Site_p.D59_splice	NM_213621	NP_998786	P46098	5HT3A_HUMAN	5-hydroxytryptamine (serotonin) receptor 3A						digestion|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	serotonin binding|serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;2.31e-17)|all_epithelial(67;2.1e-10)|all_hematologic(158;4.64e-05)|Melanoma(852;0.000312)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0294)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.71e-06)|Epithelial(105;2.58e-05)|all cancers(92;0.000238)|OV - Ovarian serous cystadenocarcinoma(223;0.191)	Alosetron(DB00969)|Chloroprocaine(DB01161)|Cisapride(DB00604)|Dolasetron(DB00757)|Granisetron(DB00889)|Mirtazapine(DB00370)|Ondansetron(DB00904)|Palonosetron(DB00377)|Procaine(DB00721)|Tubocurarine(DB01199)	TCCTTTCCCAGGATGAGAAGA	0.597000													75	11					0	0	1	0	0
TMPRSS13	84000	broad.mit.edu	37	11	117779388	117779389	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:117779388_117779389GG>AA	uc001prs.1	-	9	1313_1314	c.1220_1221CC>TT	c.(1219-1221)ACC>ATT	p.T407I	TMPRSS13_uc009yzr.1_Missense_Mutation_p.T86I|TMPRSS13_uc001prt.1_Missense_Mutation_p.T86I|TMPRSS13_uc001pru.1_Missense_Mutation_p.T407I	NM_001077263	NP_001070731	Q9BYE2	TMPSD_HUMAN	transmembrane protease, serine 13	402	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			pancreas(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.00106)		CCTCCTCATCGGTGTAATTGCT	0.614000													13	0					0	0	1	0	0
ABCG4	64137	broad.mit.edu	37	11	119029561	119029561	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:119029561C>T	uc001pvs.2	+	12	1695	c.1359C>T	c.(1357-1359)TTC>TTT	p.F453F	ABCG4_uc009zar.2_Silent_p.F453F	NM_022169	NP_071452	Q9H172	ABCG4_HUMAN	ATP-binding cassette, subfamily G, member 4	453	ABC transmembrane type-2.|Cytoplasmic (Potential).				cholesterol efflux	integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		TGGCGGTCTTCATGAGGGAGC	0.622000													293	32					0	0	1	0	0
THY1	7070	broad.mit.edu	37	11	119290135	119290135	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:119290135C>T	uc001pwq.2	-	3	503	c.469G>A	c.(469-471)GAT>AAT	p.D157N	uc001pwo.2_Intron|uc001pwp.1_Intron|THY1_uc001pwr.2_Missense_Mutation_p.D157N|THY1_uc001pws.2_RNA	NM_006288	NP_006279	P04216	THY1_HUMAN	Thy-1 cell surface antigen preproprotein	157					angiogenesis|cell-cell adhesion|cytoskeleton organization|focal adhesion assembly|negative regulation of axonogenesis|negative regulation of cell migration|negative regulation of protein kinase activity|negative regulation of T cell receptor signaling pathway|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of T cell activation|retinal cone cell development|T cell receptor signaling pathway	endoplasmic reticulum|growth cone|integral to plasma membrane|membrane raft	GPI anchor binding|integrin binding|Rho GTPase activator activity				0		Medulloblastoma(222;0.0523)|Breast(348;0.174)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.83e-05)		GACATGAAATCCGTGGCCTGG	0.597000													55	4					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	120998881	120998881	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:120998881C>T	uc010rzo.1	+	8	2195	c.2195C>T	c.(2194-2196)CCC>CTC	p.P732L		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	732	VWFD 2.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		TACGCCTTCCCCTCCGAGTTC	0.612000													129	20					0	0	1	0	0
SLC6A13	6540	broad.mit.edu	37	12	336800	336800	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:336800G>A	uc001qic.1	-	8	919	c.866C>T	c.(865-867)TCC>TTC	p.S289F	SLC6A13_uc009zdj.1_Missense_Mutation_p.S289F|SLC6A13_uc010sdl.1_Missense_Mutation_p.S197F|SLC6A13_uc010sdm.1_Missense_Mutation_p.S170F	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	289	Helical; Name=6; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			GATGGCGAAGGAGAAGAATAT	0.567000													51	35					0	0	1	0	0
AKAP3	10566	broad.mit.edu	37	12	4737408	4737408	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:4737408G>A	uc001qnb.3	-	4	889	c.660C>T	c.(658-660)ATC>ATT	p.I220I		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	220					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						TGCTCTCCTTGATCTTCAAAG	0.458000													49	110					0	0	1	0	0
ANO2	57101	broad.mit.edu	37	12	6030448	6030448	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:6030448T>C	uc001qnm.2	-	3	352	c.280A>G	c.(280-282)AAG>GAG	p.K94E		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	98	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						TAGTCGACCTTCCTCTGACTG	0.577000													45	80					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6161810	6161810	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:6161810C>T	uc001qnn.1	-	16	2335	c.2085G>A	c.(2083-2085)ATG>ATA	p.M695I	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	695	TIL 2.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CCCTCTCATCCATGTAGAGCC	0.597000													46	83					0	0	1	0	0
CHD4	1108	broad.mit.edu	37	12	6701683	6701684	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:6701683_6701684GG>AA	uc001qpo.2	-	19	2987_2988	c.2823_2824CC>TT	c.(2821-2826)GACCAG>GATTAG	p.Q942*	CHD4_uc001qpn.2_Nonsense_Mutation_p.Q935*|CHD4_uc001qpp.2_Nonsense_Mutation_p.Q939*	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	942					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						TTTTTTATCTGGTCCTCCTTGG	0.446000													35	116					0	0	1	0	0
CD163L1	283316	broad.mit.edu	37	12	7526034	7526034	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:7526034G>A	uc001qsy.2	-	14	3638	c.3612C>T	c.(3610-3612)TTC>TTT	p.F1204F	CD163L1_uc010sge.1_Silent_p.F1214F	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	1204	SRCR 11.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						CCACCCACATGAAACCAGAGC	0.537000													123	93					0	0	1	0	0
PZP	5858	broad.mit.edu	37	12	9317890	9317890	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:9317890G>A	uc001qvl.2	-	19	2361	c.2332C>T	c.(2332-2334)CTG>TTG	p.L778L	PZP_uc009zgl.2_Silent_p.L647L|PZP_uc010sgo.1_RNA|PZP_uc009zgm.1_Silent_p.L110L	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						TCTTCGGACAGGCAGAAGGCC	0.562000													67	157					0	0	1	0	0
TAS2R10	50839	broad.mit.edu	37	12	10978272	10978272	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:10978272G>A	uc001qyy.1	-	1	597	c.597C>T	c.(595-597)TCC>TCT	p.S199S		NM_023921	NP_076410	Q9NYW0	T2R10_HUMAN	taste receptor, type 2, member 10	199	Helical; Name=5; (Potential).				sensory perception of taste	integral to membrane	taste receptor activity				0						GTCTCCAAAGGGAAATGATTA	0.338000													50	45					0	0	1	0	0
STRAP	11171	broad.mit.edu	37	12	16050871	16050871	+	Missense_Mutation	SNP	C	T	T	rs145164927		TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:16050871C>T	uc001rdc.3	+	7	1048	c.694C>T	c.(694-696)CAT>TAT	p.H232Y	STRAP_uc010shw.1_Missense_Mutation_p.H245Y|STRAP_uc001rdd.3_Missense_Mutation_p.H138Y	NM_007178	NP_009109	Q9Y3F4	STRAP_HUMAN	serine/threonine kinase receptor associated	232	WD 6.				mRNA processing|RNA splicing	cell junction|mitochondrion|spliceosomal complex	identical protein binding			skin(1)	1		Hepatocellular(102;0.121)				TGCATCTCTTCATCCTGAGAA	0.333000													37	88					0	0	1	0	0
ALG10	84920	broad.mit.edu	37	12	34179674	34179674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:34179674C>T	uc001rlm.2	+	3	1565	c.1246C>T	c.(1246-1248)CGT>TGT	p.R416C		NM_032834	NP_116223	Q5BKT4	AG10A_HUMAN	asparagine-linked glycosylation 10 homolog	416	Extracellular (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity			skin(1)	1	Lung NSC(5;3.82e-05)|Acute lymphoblastic leukemia(23;0.0142)|all_hematologic(23;0.0429)	Lung NSC(34;0.204)|all_lung(34;0.235)				GCTGGAATTTCGTTACTTCAT	0.348000													47	160					0	0	1	0	0
PRICKLE1	144165	broad.mit.edu	37	12	42858229	42858229	+	Missense_Mutation	SNP	G	A	A	rs150766064		TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:42858229G>A	uc010skv.1	-	7	1894	c.1607C>T	c.(1606-1608)TCG>TTG	p.S536L	PRICKLE1_uc001rnl.2_Missense_Mutation_p.S536L|PRICKLE1_uc010skw.1_Missense_Mutation_p.S536L|PRICKLE1_uc001rnm.2_Missense_Mutation_p.S536L	NM_001144881	NP_001138353	Q96MT3	PRIC1_HUMAN	prickle homolog 1	536					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein import into nucleus	cytosol|nuclear membrane	zinc ion binding	p.S536L(1)		ovary(3)|skin(1)	4	all_cancers(12;4.25e-05)|Breast(8;0.176)			GBM - Glioblastoma multiforme(48;0.2)		AGAATCCATCGAATCCCGAAC	0.413000													247	149					0	0	1	0	0
NELL2	4753	broad.mit.edu	37	12	44902725	44902725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:44902725C>T	uc001rog.2	-	20	3038	c.2443G>A	c.(2443-2445)GAA>AAA	p.E815K	NELL2_uc001rof.3_Missense_Mutation_p.E814K|NELL2_uc001roh.2_Missense_Mutation_p.E815K|NELL2_uc009zkd.2_Missense_Mutation_p.E767K|NELL2_uc010skz.1_Missense_Mutation_p.E865K|NELL2_uc010sla.1_Missense_Mutation_p.E838K	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	815					cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		CTTCACAGTTCCTGAAGGCAC	0.333000													45	28					0	0	1	0	0
SLC38A1	81539	broad.mit.edu	37	12	46591542	46591542	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:46591542G>A	uc001rpa.2	-	16	1581	c.1323C>T	c.(1321-1323)ATC>ATT	p.I441I	SLC38A1_uc001rpb.2_Silent_p.I441I|SLC38A1_uc001rpc.2_Silent_p.I441I|SLC38A1_uc001rpd.2_Silent_p.I441I|SLC38A1_uc001rpe.2_Silent_p.I441I|SLC38A1_uc009zkj.1_Silent_p.I441I	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	441	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			CCTGGTCTGTGATTTTTAAAT	0.318000													21	79					0	0	1	0	0
MLL2	8085	broad.mit.edu	37	12	49445230	49445230	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:49445230G>A	uc001rta.3	-	10	2236	c.2236C>T	c.(2236-2238)CGG>TGG	p.R746W		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	746	Pro-rich.			Missing (in Ref. 1; AAC51734).	chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						TCCTCAGGCCGGGGTGACAGG	0.697000			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			33	92					0	0	1	0	0
NCKAP5L	57701	broad.mit.edu	37	12	50190819	50190819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:50190819C>T	uc009zlk.2	-	8	1026	c.824G>A	c.(823-825)GGT>GAT	p.G275D	NCKAP5L_uc001rvc.3_5'Flank|NCKAP5L_uc001rvb.2_5'UTR	NM_001037806	NP_001032895	Q9HCH0	NCK5L_HUMAN	NCK-associated protein 5-like	271	Pro-rich.									central_nervous_system(1)	1						CCTGCTAGGACCCCAGGGCCG	0.692000													6	6					0	0	1	0	0
ACVRL1	94	broad.mit.edu	37	12	52306883	52306883	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:52306883G>A	uc001rzj.2	+	3	345	c.62G>A	c.(61-63)GGA>GAA	p.G21E	ACVRL1_uc001rzk.2_Missense_Mutation_p.G21E|ACVRL1_uc010snm.1_Intron	NM_000020	NP_000011	P37023	ACVL1_HUMAN	activin A receptor type II-like 1 precursor	21					blood vessel endothelial cell proliferation involved in sprouting angiogenesis|blood vessel maturation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of endothelial cell migration|negative regulation of focal adhesion assembly|positive regulation of BMP signaling pathway|positive regulation of transcription, DNA-dependent|regulation of blood pressure|regulation of blood vessel endothelial cell migration|regulation of DNA replication|regulation of endothelial cell proliferation|transforming growth factor beta receptor signaling pathway|wound healing, spreading of epidermal cells	cell surface|integral to plasma membrane	activin binding|activin receptor activity, type I|ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			lung(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0991)	Adenosine triphosphate(DB00171)	TGTCTTCCAGGAGACCCTGTG	0.647000									Hereditary_Hemorrhagic_Telangiectasia				8	20					0	0	1	0	0
KRT71	112802	broad.mit.edu	37	12	52946769	52946769	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:52946769G>A	uc001sao.2	-	1	163	c.93C>T	c.(91-93)TCC>TCT	p.S31S		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	31	Head.|Gly-rich.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		CTGCCCGGAAGGAGGATGAGC	0.662000													197	150					0	0	1	0	0
KRT78	196374	broad.mit.edu	37	12	53242587	53242587	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:53242587G>A	uc001sbc.1	-	1	192	c.128C>T	c.(127-129)TCC>TTC	p.S43F		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	43	Head.|Gly-rich.					keratin filament	protein binding|structural molecule activity			ovary(2)	2						CCCCCCAAAGGAATTAAGGCT	0.672000													28	25					0	0	1	0	0
RARG	5916	broad.mit.edu	37	12	53605501	53605501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:53605501G>A	uc001sce.2	-	10	1809	c.1324C>T	c.(1324-1326)CCT>TCT	p.P442S	RARG_uc001scd.2_Missense_Mutation_p.P431S|RARG_uc010sob.1_Missense_Mutation_p.P420S|RARG_uc001scf.2_Missense_Mutation_p.P442S|RARG_uc001scg.2_Missense_Mutation_p.P370S|RARG_uc010soc.1_Missense_Mutation_p.P321S	NM_000966	NP_000957	P13631	RARG_HUMAN	retinoic acid receptor, gamma isoform 1	442					canonical Wnt receptor signaling pathway|embryonic eye morphogenesis|embryonic hindlimb morphogenesis|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter|regulation of cell size|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to retinoic acid	integral to membrane|transcription factor complex	retinoic acid receptor activity|retinoid X receptor binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			breast(2)|ovary(1)|lung(1)	4					Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tazarotene(DB00799)|Tretinoin(DB00755)	TGGCCCCCAGGAACCTCATCC	0.632000													25	13					0	0	1	0	0
NEUROD4	58158	broad.mit.edu	37	12	55420957	55420957	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:55420957G>A	uc001sgp.3	+	2	1112	c.734G>A	c.(733-735)AGT>AAT	p.S245N		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	245					amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						CCTGACTGCAGTACACCCCCT	0.507000													38	23					0	0	1	0	0
OR6C65	403282	broad.mit.edu	37	12	55794744	55794744	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:55794744C>T	uc010spl.1	+	1	432	c.432C>T	c.(430-432)ATC>ATT	p.I144I		NM_001005518	NP_001005518	A6NJZ3	O6C65_HUMAN	olfactory receptor, family 6, subfamily C,	144	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGCTTGTAATCAGCTCCTGGC	0.428000													129	87					0	0	1	0	0
APOF	319	broad.mit.edu	37	12	56755236	56755236	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:56755236C>A	uc001sle.1	-	2	808	c.754G>T	c.(754-756)GGG>TGG	p.G252W		NM_001638	NP_001629	Q13790	APOF_HUMAN	apolipoprotein F precursor	252					cholesterol metabolic process	high-density lipoprotein particle|low-density lipoprotein particle	cholesterol binding|lipid transporter activity|receptor binding				0						TGCTGAACCCCAGACCTTAAT	0.512000													51	127					1.16596e-39	1.19155e-39	1	1	0
KCNC2	3747	broad.mit.edu	37	12	75601706	75601706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:75601706C>T	uc001sxg.1	-	2	602	c.58G>A	c.(58-60)GAA>AAA	p.E20K	KCNC2_uc009zry.2_Missense_Mutation_p.E20K|KCNC2_uc001sxe.2_Missense_Mutation_p.E20K|KCNC2_uc001sxf.2_Missense_Mutation_p.E20K|KCNC2_uc010stw.1_Missense_Mutation_p.E20K	NM_139137	NP_631875	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	20	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						CGGTAGGTTTCGTGCCGGGTG	0.627000													56	125					0	0	1	0	0
NAV3	89795	broad.mit.edu	37	12	78516170	78516170	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:78516170C>T	uc001syp.2	+	16	4373	c.4200C>T	c.(4198-4200)CTC>CTT	p.L1400L	NAV3_uc001syo.2_Silent_p.L1400L|NAV3_uc010sub.1_Silent_p.L900L|NAV3_uc009zsf.2_Intron	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1400	Ser-rich.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						AGAGCCTGCTCATGAGAACGG	0.552000										HNSCC(70;0.22)			62	161					0	0	1	0	0
CCDC59	29080	broad.mit.edu	37	12	82752017	82752017	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:82752017C>T	uc001szp.3	-	1	183	c.139G>A	c.(139-141)GGG>AGG	p.G47R	C12orf26_uc001szq.2_5'Flank	NM_014167	NP_054886	Q9P031	TAP26_HUMAN	coiled-coil domain containing 59	47					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding				0						CGAACGCTCCCCACGAAGGCT	0.498000											OREG0022008	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	83					0	0	1	0	0
C12orf50	160419	broad.mit.edu	37	12	88390263	88390263	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:88390263C>T	uc001tam.1	-	6	537	c.369G>A	c.(367-369)GGG>GGA	p.G123G	C12orf50_uc001tan.2_Silent_p.G177G	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	123										skin(2)|ovary(1)	3						TGTAGTATTCCCCTAATCAAC	0.313000													34	17					0	0	1	0	0
CDK17	5128	broad.mit.edu	37	12	96694102	96694102	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:96694102T>C	uc001tep.1	-	6	1069	c.580A>G	c.(580-582)AAA>GAA	p.K194E	CDK17_uc009ztk.2_Missense_Mutation_p.K194E|CDK17_uc010svb.1_Missense_Mutation_p.K141E	NM_002595	NP_002586	Q00537	CDK17_HUMAN	PCTAIRE protein kinase 2	194	Protein kinase.						ATP binding|cyclin-dependent protein kinase activity			ovary(3)|lung(2)|kidney(1)|central_nervous_system(1)	7						TTTTCCAATTTGATGTAGGTT	0.259000													37	19					0	0	1	0	0
ACACB	32	broad.mit.edu	37	12	109703275	109703275	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:109703275A>G	uc001tob.2	+	52	7314	c.7195A>G	c.(7195-7197)ATC>GTC	p.I2399V	ACACB_uc001toc.2_Missense_Mutation_p.I2399V|ACACB_uc001tod.2_RNA|ACACB_uc010sxm.1_Missense_Mutation_p.I1065V	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	2399					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	GCGCTCCACCATCCGTGAGAA	0.632000													35	29					0	0	1	0	0
MYO1H	283446	broad.mit.edu	37	12	109863822	109863822	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:109863822C>T	uc010sxn.1	+	17	1749	c.1749C>T	c.(1747-1749)ATC>ATT	p.I583I		NM_001101421	NP_001094891	Q8N1T3	MYO1H_HUMAN	myosin 1H	Error:Variant_position_missing_in_B4DNW6_after_alignment						myosin complex	motor activity				0						CCTCCTACATCCGTTGCATCA	0.458000													14	32					0	0	1	0	0
CCDC63	160762	broad.mit.edu	37	12	111321968	111321968	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:111321968G>A	uc001trv.1	+	8	1183	c.988G>A	c.(988-990)GAG>AAG	p.E330K	CCDC63_uc010sye.1_Missense_Mutation_p.E290K|CCDC63_uc001trw.1_Missense_Mutation_p.E245K	NM_152591	NP_689804	Q8NA47	CCD63_HUMAN	coiled-coil domain containing 63	330										skin(6)|ovary(1)|pancreas(1)	8						TCTGGCCAAGGAGGAGAAGAA	0.532000													87	49					0	0	1	0	0
PTPN11	5781	broad.mit.edu	37	12	112926270	112926270	+	Missense_Mutation	SNP	C	T	T	rs121918457		TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:112926270C>T	uc001ttx.2	+	12	1783	c.1403C>T	c.(1402-1404)ACG>ATG	p.T468M		NM_002834	NP_002825	Q06124	PTN11_HUMAN	protein tyrosine phosphatase, non-receptor type	472	Tyrosine-protein phosphatase.		T -> M (in LEOPARD1).		axon guidance|cell junction assembly|ephrin receptor signaling pathway|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|interferon-gamma-mediated signaling pathway|leukocyte migration|platelet activation|regulation of cell adhesion mediated by integrin|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|T cell costimulation|type I interferon-mediated signaling pathway	cytosol	non-membrane spanning protein tyrosine phosphatase activity|protein binding			haematopoietic_and_lymphoid_tissue(375)|lung(6)|autonomic_ganglia(2)|soft_tissue(2)|central_nervous_system(2)|large_intestine(1)|skin(1)|ovary(1)|NS(1)|kidney(1)	392						CGGACAGGGACGTTCATTGTG	0.443000			Mis		JMML|AML|MDS		Noonan Syndrome		Noonan_syndrome				125	92					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117691489	117691489	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:117691489C>T	uc001twm.1	-	17	3288	c.2602G>A	c.(2602-2604)GAC>AAC	p.D868N	NOS1_uc001twn.1_Missense_Mutation_p.D72N	NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	868	Flavodoxin-like.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TCTCTGAGGTCGGGCCCATCG	0.562000													121	69					0	0	1	0	0
RHOF	54509	broad.mit.edu	37	12	122217508	122217508	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:122217508G>A	uc001ubb.2	-	5	587	c.532C>T	c.(532-534)CGG>TGG	p.R178W	TMEM120B_uc001ubc.3_3'UTR|TMEM120B_uc009zxh.2_3'UTR|TMEM120B_uc001uba.1_RNA	NM_019034	NP_061907	Q9HBH0	RHOF_HUMAN	ras homolog gene family, member F precursor	178					actin filament organization|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|plasma membrane	GTP binding|GTPase activity			ovary(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;4.38e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.223)		ACATTCTCCCGAAACTTGGCG	0.642000													154	107					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124311333	124311333	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:124311333C>T	uc001uft.3	+	24	3950	c.3925C>T	c.(3925-3927)CCT>TCT	p.P1309S		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1309	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CAGAAAGCTACCTCGGCCAGT	0.453000													51	119					0	0	1	0	0
GPR133	283383	broad.mit.edu	37	12	131466439	131466439	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:131466439T>G	uc001uit.3	+	5	880	c.321T>G	c.(319-321)TTT>TTG	p.F107L	GPR133_uc010tbm.1_Missense_Mutation_p.F139L	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor	107	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		GGGTCACGTTTTCTTTTTTCT	0.463000													100	46					0	0	1	0	0
ULK1	8408	broad.mit.edu	37	12	132405686	132405686	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:132405686G>A	uc001uje.2	+	27	3271	c.3003G>A	c.(3001-3003)GAG>GAA	p.E1001E		NM_003565	NP_003556	O75385	ULK1_HUMAN	Unc-51-like kinase 1	1001					autophagy|protein localization|regulation of autophagy	autophagic vacuole|cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	ATP binding|protein complex binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.07e-08)|Epithelial(86;2.56e-07)|all cancers(50;3.01e-07)		AGCACCGTGAGGGCTGCGTCC	0.662000													27	57					0	0	1	0	0
POLE	5426	broad.mit.edu	37	12	133225928	133225929	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:133225928_133225929GG>AA	uc001uks.1	-	31	4012_4013	c.3968_3969CC>TT	c.(3967-3969)GCC>GTT	p.A1323V	POLE_uc001ukr.1_Missense_Mutation_p.A127V|POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Missense_Mutation_p.A1296V	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	1323					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		GGATGCTGCGGGCAGTTCTTCG	0.649000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					37	67					0	0	1	0	0
ZMYM5	9205	broad.mit.edu	37	13	20409705	20409705	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr13:20409705G>A	uc010tcn.1	-	7	1428	c.1163C>T	c.(1162-1164)CCT>CTT	p.P388L	ZMYM5_uc001umm.1_Missense_Mutation_p.P212L	NM_001142684	NP_001136156	Q9UJ78	ZMYM5_HUMAN	zinc finger protein 237 isoform 3	388	MYM-type 3.					nucleus	zinc ion binding				0		all_cancers(29;2.96e-22)|all_epithelial(30;3.76e-20)|all_lung(29;4.38e-20)|Lung NSC(5;5.8e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.61e-05)|Epithelial(112;4.89e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00171)|Lung(94;0.00942)|LUSC - Lung squamous cell carcinoma(192;0.0431)		ACTCTTACTAGGCATGTACTC	0.373000													150	11					0	0	1	0	0
KIAA0564	23078	broad.mit.edu	37	13	42524105	42524105	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr13:42524105G>A	uc001uyj.2	-	2	278	c.208C>T	c.(208-210)CCT>TCT	p.P70S	KIAA0564_uc001uyk.2_Missense_Mutation_p.P70S	NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	70						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		GGATTCTTAGGAATTTTCAAC	0.254000													34	0					0	0	1	0	0
LMO7	4008	broad.mit.edu	37	13	76395638	76395638	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr13:76395638C>T	uc001vjv.2	+	11	2594	c.1834C>T	c.(1834-1836)CCC>TCC	p.P612S	LMO7_uc010thv.1_Missense_Mutation_p.P563S|LMO7_uc001vjt.1_Missense_Mutation_p.P511S|LMO7_uc010thw.1_Missense_Mutation_p.P462S|LMO7_uc001vjw.1_Missense_Mutation_p.P518S	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	897						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		AGCTTCTCTCCCCAGAAGTTA	0.488000													200	4					0	0	1	0	0
OR11H6	122748	broad.mit.edu	37	14	20692112	20692112	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:20692112G>A	uc010tlc.1	+	1	244	c.244G>A	c.(244-246)GGA>AGA	p.G82R		NM_001004480	NP_001004480	Q8NGC7	O11H6_HUMAN	olfactory receptor, family 11, subfamily H,	82	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(95;0.00108)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0143)		CATCCTTCTGGGAAACTTTGC	0.468000													20	37					0	0	1	0	0
TEP1	7011	broad.mit.edu	37	14	20849134	20849134	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:20849134T>C	uc001vxe.2	-	33	4758	c.4718A>G	c.(4717-4719)GAA>GGA	p.E1573G	TEP1_uc010ahk.2_Missense_Mutation_p.E916G|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.E1465G|TEP1_uc010tlh.1_5'UTR	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1573					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		CAGACCCAATTCCAAGTGTGC	0.532000													46	135					0	0	1	0	0
TEP1	7011	broad.mit.edu	37	14	20869274	20869274	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:20869274G>A	uc001vxe.2	-	9	1458	c.1418C>T	c.(1417-1419)TCT>TTT	p.S473F	TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.S365F	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	473	TROVE.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		GCGACTTCGAGAAAAGAGCTG	0.517000													19	70					0	0	1	0	0
OR4E2	26686	broad.mit.edu	37	14	22133747	22133747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:22133747G>A	uc010tmd.1	+	1	451	c.451G>A	c.(451-453)GGG>AGG	p.G151R		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	151	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		TCTCTGGTTGGGGGGTACTGT	0.483000													72	163					0	0	1	0	0
OXA1L	5018	broad.mit.edu	37	14	23235899	23235899	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:23235899C>T	uc001wgn.2	+	1	169	c.169C>T	c.(169-171)CTT>TTT	p.L57F	OXA1L_uc010tnc.1_Missense_Mutation_p.L57F|OXA1L_uc001wgo.2_RNA|OXA1L_uc010akc.2_Missense_Mutation_p.L57F|OXA1L_uc001wgp.2_5'Flank|OXA1L_uc001wgq.2_5'Flank	NM_005015	NP_005006	Q15070	OXA1L_HUMAN	oxidase (cytochrome c) assembly 1-like	Error:Variant_position_missing_in_Q15070_after_alignment					aerobic respiration|mitochondrial proton-transporting ATP synthase complex assembly|mitochondrial respiratory chain complex I assembly|negative regulation of ATPase activity|negative regulation of oxidoreductase activity|protein insertion into membrane|protein tetramerization	integral to mitochondrial membrane|mitochondrial respiratory chain|protein complex	protein homodimerization activity|ribosome binding			central_nervous_system(1)	1	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.0096)		AGCAAGTCCTCTTCCGGGCAA	0.607000													136	87					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23868031	23868031	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:23868031C>T	uc001wjv.2	-	15	1864	c.1797G>A	c.(1795-1797)AAG>AAA	p.K599K		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	599	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		TGAGAGGATCCTTGTTTTTTT	0.552000													48	127					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23884999	23884999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:23884999C>T	uc001wjx.2	-	35	5102	c.4996G>A	c.(4996-4998)GAC>AAC	p.D1666N		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1666	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TCCTTCAGGTCGTCGTTGGCA	0.617000													90	43					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	36840940	36840940	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:36840940C>T	uc001wtp.2	+	1	571	c.322C>T	c.(322-324)CGT>TGT	p.R108C		NM_199286	NP_954980			stella																		GGGCGGAGTTCGTACGCATGA	0.458000													43	34					0	0	1	0	0
C14orf104	55172	broad.mit.edu	37	14	50100934	50100934	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:50100934T>C	uc001wws.3	-	1	1015	c.934A>G	c.(934-936)AGG>GGG	p.R312G	SDCCAG1_uc010anj.1_Intron|C14orf104_uc001wwt.3_Missense_Mutation_p.R312G	NM_018139	NP_060609	Q9NVR5	KTU_HUMAN	kintoun isoform 1	312					axonemal dynein complex assembly|ciliary cell motility|flagellar cell motility	cytoplasm					0	all_epithelial(31;0.0021)|Breast(41;0.0124)					TCAGGTTTCCTCGAGTCGAGG	0.647000									Kartagener_syndrome				20	40					0	0	1	0	0
SOCS4	122809	broad.mit.edu	37	14	55510993	55510993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:55510993C>T	uc001xbo.2	+	3	1799	c.1234C>T	c.(1234-1236)CCT>TCT	p.P412S	SOCS4_uc001xbp.2_Missense_Mutation_p.P412S	NM_199421	NP_955453	Q8WXH5	SOCS4_HUMAN	suppressor of cytokine signaling 4	412	SOCS box.				intracellular signal transduction|negative regulation of signal transduction|regulation of growth					ovary(1)|kidney(1)	2						CCTTCCAATTCCTTCTTCTAT	0.378000													23	61					0	0	1	0	0
DACT1	51339	broad.mit.edu	37	14	59113603	59113603	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:59113603C>T	uc001xdw.2	+	4	2426	c.2262C>T	c.(2260-2262)TTC>TTT	p.F754F	DACT1_uc010trv.1_Silent_p.F473F|DACT1_uc001xdx.2_Silent_p.F717F|DACT1_uc010trw.1_Silent_p.F473F	NM_016651	NP_057735	Q9NYF0	DACT1_HUMAN	dapper 1 isoform 1	754					multicellular organismal development|Wnt receptor signaling pathway	cytoplasm|nucleus				large_intestine(2)|lung(2)|ovary(1)	5						CCAACTGCTTCGGGGACAGCG	0.597000													111	259					0	0	1	0	0
KCNH5	27133	broad.mit.edu	37	14	63174447	63174447	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:63174447C>T	uc001xfx.2	-	11	2797	c.2746G>A	c.(2746-2748)GAA>AAA	p.E916K	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	916	CAD (involved in subunit assembly) (By similarity).|Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		TCTTTGAGTTCGTGTTTGACT	0.507000													75	181					0	0	1	0	0
C14orf50	145376	broad.mit.edu	37	14	65035145	65035145	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:65035145G>A	uc001xhl.1	+	7	609	c.513G>A	c.(511-513)AAG>AAA	p.K171K		NM_172365	NP_758953	Q96LQ0	CN050_HUMAN	hypothetical protein LOC145376	171										skin(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00382)|all cancers(60;0.00427)|BRCA - Breast invasive adenocarcinoma(234;0.0488)		CACTGGAAAAGAAACCCAAAA	0.323000													16	48					0	0	1	0	0
C14orf50	145376	broad.mit.edu	37	14	65035159	65035159	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:65035159A>C	uc001xhl.1	+	7	623	c.527A>C	c.(526-528)TAT>TCT	p.Y176S		NM_172365	NP_758953	Q96LQ0	CN050_HUMAN	hypothetical protein LOC145376	176										skin(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00382)|all cancers(60;0.00427)|BRCA - Breast invasive adenocarcinoma(234;0.0488)		CCCAAAAGCTATATGGTGTAA	0.313000													13	47					0	0	1	0	0
GPHN	10243	broad.mit.edu	37	14	67589068	67589068	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:67589068G>A	uc001xiy.2	+	16	2744	c.1623G>A	c.(1621-1623)ACG>ACA	p.T541T	GPHN_uc001xix.2_Silent_p.T574T|GPHN_uc010tss.1_Silent_p.T587T|GPHN_uc010tst.1_Silent_p.T510T|GPHN_uc010tsu.1_Silent_p.T464T	NM_001024218	NP_001019389	Q9NQX3	GEPH_HUMAN	gephyrin isoform 2	541	MPT adenylyltransferase.				Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cell junction|cytoplasm|cytoskeleton|postsynaptic membrane	ATP binding|metal ion binding|nucleotidyltransferase activity			ovary(2)	2		all_cancers(7;0.0476)|all_hematologic(31;0.0116)		Epithelial(1;1.73e-08)|all cancers(60;3.15e-07)|OV - Ovarian serous cystadenocarcinoma(108;0.000275)|BRCA - Breast invasive adenocarcinoma(234;0.00323)|Colorectal(3;0.0938)|KIRC - Kidney renal clear cell carcinoma(182;0.184)		GTTACCCCACGATCAACTTGG	0.393000			T	MLL	AL								34	62					0	0	1	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72190408	72190408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:72190408G>A	uc001xms.2	+	16	4664	c.4316G>A	c.(4315-4317)AGT>AAT	p.S1439N	SIPA1L1_uc001xmt.2_Missense_Mutation_p.S1418N|SIPA1L1_uc001xmu.2_Missense_Mutation_p.S1418N|SIPA1L1_uc001xmv.2_Missense_Mutation_p.S1439N|SIPA1L1_uc010ttm.1_Missense_Mutation_p.S893N|SIPA1L1_uc001xmw.2_Missense_Mutation_p.S204N	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1439	Ser-rich.				actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		GTTTTCACCAGTGCCCGGAGT	0.453000													104	65					0	0	1	0	0
DPF3	8110	broad.mit.edu	37	14	73219993	73219993	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:73219993G>A	uc001xnc.2	-	3	293	c.280C>T	c.(280-282)CGG>TGG	p.R94W	DPF3_uc001xnf.2_RNA|DPF3_uc010ari.1_Missense_Mutation_p.R94W|DPF3_uc010ttq.1_Missense_Mutation_p.R104W	NM_012074	NP_036206	Q92784	DPF3_HUMAN	D4, zinc and double PHD fingers, family 3	94					chromatin modification|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nBAF complex	nucleic acid binding|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00649)|OV - Ovarian serous cystadenocarcinoma(108;0.0654)		TCCAGCAGCCGCAGTTTTGGA	0.597000													3	44					0	0	1	0	0
MLH3	27030	broad.mit.edu	37	14	75514826	75514826	+	Silent	SNP	A	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:75514826A>G	uc001xrd.1	-	2	1749	c.1533T>C	c.(1531-1533)CCT>CCC	p.P511P	MLH3_uc001xre.1_Silent_p.P511P|MLH3_uc010tuy.1_RNA	NM_001040108	NP_001035197	Q9UHC1	MLH3_HUMAN	mutL homolog 3 isoform 1	511					mismatch repair|reciprocal meiotic recombination	chiasma|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|mismatched DNA binding|protein binding|satellite DNA binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00688)		GTGTCTGAAAAGGGCTTAAAA	0.378000								MMR					3	106					0	0	1	0	0
KCNK10	54207	broad.mit.edu	37	14	88729750	88729750	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:88729750C>T	uc001xwo.2	-	2	640	c.183G>A	c.(181-183)GGG>GGA	p.G61G	KCNK10_uc001xwm.2_Silent_p.G66G|KCNK10_uc001xwn.2_Silent_p.G66G	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	61	Cytoplasmic (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						TCTGCAAGCCCCCTTGGGAGG	0.612000													86	189					0	0	1	0	0
BDKRB2	624	broad.mit.edu	37	14	96707829	96707829	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:96707829G>A	uc010avm.1	+	3	1360	c.1164G>A	c.(1162-1164)GGG>GGA	p.G388G	BDKRB2_uc010avl.1_3'UTR|BDKRB2_uc010twu.1_Silent_p.G361G|BDKRB2_uc001yfg.2_Silent_p.G388G	NM_000623	NP_000614	P30411	BKRB2_HUMAN	bradykinin receptor B2	388	Cytoplasmic (Potential).				arachidonic acid secretion|elevation of cytosolic calcium ion concentration|transmembrane receptor protein tyrosine kinase signaling pathway	endosome|integral to plasma membrane	bradykinin receptor activity|phosphatidylinositol phospholipase C activity|protease binding|protein heterodimerization activity|type 1 angiotensin receptor binding	p.G388E(1)		ovary(3)|breast(1)|kidney(1)	5		all_cancers(154;0.0678)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.226)		ACTGGGCAGGGAGCAGACAGT	0.552000													25	60					0	0	1	0	0
BCL11B	64919	broad.mit.edu	37	14	99697843	99697843	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:99697843G>A	uc001yga.2	-	3	746	c.479C>T	c.(478-480)TCC>TTC	p.S160F	BCL11B_uc001ygb.2_Intron	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	160						nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		GTGAGGGTGGGAGGAGGCAGC	0.672000			T	TLX3	T-ALL								12	18					0	0	1	0	0
MIR1185-2	100302209	broad.mit.edu	37	14	101510585	101510585	+	RNA	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:101510585G>A	hsa-mir-1185-2|MI0003821	+			c.51G>A			uc010awd.2_5'Flank|MIR381_hsa-mir-381|MI0000789_5'Flank|MIR487B_hsa-mir-487b|MI0003530_5'Flank																	0						GATTAATGGCGAATATACAGG	0.507000													28	90					0	0	1	0	0
ASPG	374569	broad.mit.edu	37	14	104561948	104561948	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:104561948C>T	uc001yoq.1	+	4	444	c.384C>T	c.(382-384)TTC>TTT	p.F128F	ASPG_uc001yoo.1_Silent_p.F156F|ASPG_uc001yop.1_Silent_p.F128F|ASPG_uc001yor.1_Silent_p.F128F	NM_001080464	NP_001073933	Q86U10	LPP60_HUMAN	60 kDa lysophospholipase	128	Asparaginase.				lipid catabolic process		1-alkyl-2-acetylglycerophosphocholine esterase activity|asparaginase activity|lysophospholipase activity				0						TGCTGTCCTTCATGCTGGAGA	0.627000													58	43					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106322074	106322074	+	RNA	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:106322074C>T	uc010tyt.1	-	3598		c.55412G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						ACCACGTGTTCGTCTGTGCCC	0.627000													86	187					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106347349	106347349	+	Splice_Site	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:106347349C>T	uc010tyt.1	-	3214		c.50485_splice	c.e3214+1							Parts of antibodies, mostly variable regions.												0						CTCTCTCTGCCTTCGGCTGAC	0.567000													89	48					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106471512	106471512	+	RNA	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:106471512C>T	uc010tyt.1	-	1891		c.36597G>A								Parts of antibodies, mostly variable regions.												0						TTCTTCACCTCAGCCCCAGAC	0.582000													19	102					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106478214	106478214	+	RNA	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:106478214G>A	uc010tyt.1	-	1857		c.36072C>T								Parts of antibodies, mostly variable regions.												0						CGACTCTTGAGGGAGGGGTTG	0.577000													161	627					0	0	1	0	0
TRPM1	4308	broad.mit.edu	37	15	31358302	31358302	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr15:31358302A>G	uc001zfm.2	-	6	829	c.701T>C	c.(700-702)ATC>ACC	p.I234T	TRPM1_uc010azy.2_Missense_Mutation_p.I147T|TRPM1_uc001zfl.2_RNA|uc010ubm.1_5'Flank|MIR211_hsa-mir-211|MI0000287_5'Flank	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	234	Extracellular (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		CTGCAGGGAGATGTGCTTTTC	0.547000													83	129					0	0	1	0	0
SLC12A6	9990	broad.mit.edu	37	15	34628871	34628871	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr15:34628871G>A	uc001zhw.2	-	1	175	c.11C>T	c.(10-12)CCA>CTA	p.P4L	SLC12A6_uc001zhx.2_Missense_Mutation_p.P4L|SLC12A6_uc001zhy.2_RNA|SLC12A6_uc001zhz.2_RNA|SLC12A6_uc001zia.2_Intron|SLC12A6_uc001zib.2_Intron|SLC12A6_uc001zic.2_Missense_Mutation_p.P4L|SLC12A6_uc010bau.2_Missense_Mutation_p.P4L|SLC12A6_uc001zid.2_Intron	NM_133647	NP_598408	Q9UHW9	S12A6_HUMAN	solute carrier family 12, member 6 isoform a	4	Cytoplasmic (Potential).				angiogenesis|cellular hypotonic salinity response|potassium ion transport|sodium ion transport	basolateral plasma membrane|integral to membrane	potassium:chloride symporter activity			central_nervous_system(5)|ovary(1)|skin(1)	7		all_lung(180;2.78e-08)		all cancers(64;3.43e-17)|GBM - Glioblastoma multiforme(113;2.6e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0301)	Potassium Chloride(DB00761)	GGTGGTTTCTGGAGGATGCAT	0.443000													33	48					0	0	1	0	0
INO80	54617	broad.mit.edu	37	15	41388426	41388426	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr15:41388426G>A	uc001zni.2	-	2	296	c.83C>T	c.(82-84)GCC>GTC	p.A28V	INO80_uc010ucu.1_RNA	NM_017553	NP_060023	Q9ULG1	INO80_HUMAN	INO80 complex homolog 1	28	Assembles INO80 complex module with putative regulatory components INO80E, INO80F, UCHL5, NFRKB, MCRS1 and IN80D.				cell division|cellular response to ionizing radiation|cellular response to UV|chromatin remodeling|double-strand break repair via homologous recombination|mitotic sister chromatid segregation|positive regulation of cell growth|positive regulation of DNA replication involved in S phase|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle|spindle assembly|UV-damage excision repair	Ino80 complex|microtubule	actin binding|alpha-tubulin binding|ATP binding|ATPase activity|DNA binding|DNA helicase activity			ovary(2)|pancreas(1)|skin(1)	4						CAACCGGAGGGCCCTCTCCAA	0.458000													19	28					0	0	1	0	0
TRIM69	140691	broad.mit.edu	37	15	45047410	45047410	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr15:45047410C>T	uc001zuf.2	+	3	1214	c.319C>T	c.(319-321)CCC>TCC	p.P107S	TRIM69_uc001zui.1_Intron|TRIM69_uc010bdy.1_Intron|TRIM69_uc001zug.1_Missense_Mutation_p.P107S|TRIM69_uc001zuh.1_Intron	NM_182985	NP_892030	Q86WT6	TRI69_HUMAN	tripartite motif-containing 69 isoform a	107	Necessary for nuclear localization (By similarity).				apoptosis	nuclear speck	zinc ion binding				0		all_cancers(109;2.47e-13)|all_epithelial(112;2.84e-11)|Lung NSC(122;2.23e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;5.5e-19)|GBM - Glioblastoma multiforme(94;1.07e-06)|Colorectal(105;0.138)|COAD - Colon adenocarcinoma(120;0.141)		TAAGAAGTTACCCTTACTCAA	0.433000													34	39					0	0	1	0	0
TRIM69	140691	broad.mit.edu	37	15	45051047	45051047	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr15:45051047C>T	uc001zuf.2	+	5	1703	c.808C>T	c.(808-810)CTC>TTC	p.L270F	TRIM69_uc001zui.1_Missense_Mutation_p.L66F|TRIM69_uc010bdy.1_Intron|TRIM69_uc001zug.1_Missense_Mutation_p.L270F|TRIM69_uc001zuh.1_Missense_Mutation_p.L111F	NM_182985	NP_892030	Q86WT6	TRI69_HUMAN	tripartite motif-containing 69 isoform a	270					apoptosis	nuclear speck	zinc ion binding				0		all_cancers(109;2.47e-13)|all_epithelial(112;2.84e-11)|Lung NSC(122;2.23e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;5.5e-19)|GBM - Glioblastoma multiforme(94;1.07e-06)|Colorectal(105;0.138)|COAD - Colon adenocarcinoma(120;0.141)		CTTCGACTTTCTCAAAGTGAG	0.473000													8	16					0	0	1	0	0
ZNF609	23060	broad.mit.edu	37	15	64970529	64970529	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr15:64970529C>T	uc002ann.2	+	5	3617	c.3617C>T	c.(3616-3618)CCC>CTC	p.P1206L		NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	1206						nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						AGCAAGGAGCCCCGGCCAAGT	0.582000													70	106					0	0	1	0	0
ANKDD1A	348094	broad.mit.edu	37	15	65214128	65214128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr15:65214128G>A	uc002aoa.2	+	4	305	c.276G>A	c.(274-276)ATG>ATA	p.M92I	ANKDD1A_uc002anx.1_Missense_Mutation_p.M88I|ANKDD1A_uc002any.2_Missense_Mutation_p.M1I|ANKDD1A_uc002anz.2_Missense_Mutation_p.M1I|ANKDD1A_uc002aob.2_Intron|ANKDD1A_uc002aoc.2_RNA|ANKDD1A_uc010bha.2_Missense_Mutation_p.M1I	NM_182703	NP_874362	Q495B1	AKD1A_HUMAN	ankyrin repeat and death domain containing 1A	92	ANK 3.				signal transduction					ovary(1)	1						AGTTTGGGATGAATGCGCTTC	0.542000													36	54					0	0	1	0	0
CORO2B	10391	broad.mit.edu	37	15	68987482	68987482	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr15:68987482G>A	uc002arj.3	+	3	249	c.220G>A	c.(220-222)GGC>AGC	p.G74S	CORO2B_uc010bic.2_Missense_Mutation_p.G69S	NM_006091	NP_006082	Q9UQ03	COR2B_HUMAN	coronin, actin binding protein, 2B	74					actin cytoskeleton organization	actin cytoskeleton|cytoplasm|membrane	actin filament binding			ovary(3)|skin(2)|large_intestine(1)	6						TCTGCAGACAGGCAGGATTGA	0.527000													71	53					0	0	1	0	0
TMEM202	338949	broad.mit.edu	37	15	72690730	72690730	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr15:72690730G>A	uc002auq.2	+	1	63	c.63G>A	c.(61-63)GGG>GGA	p.G21G	TMEM202_uc002aur.2_RNA	NM_001080462	NP_001073931	A6NGA9	TM202_HUMAN	transmembrane protein 202	21						integral to membrane		p.G21E(1)		central_nervous_system(1)|skin(1)	2						AAATAAAGGGGAACCGGAAAT	0.443000													9	27					0	0	1	0	0
IQGAP1	8826	broad.mit.edu	37	15	91017317	91017317	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr15:91017317C>T	uc002bpl.1	+	22	2628	c.2527C>T	c.(2527-2529)CAG>TAG	p.Q843*		NM_003870	NP_003861	P46940	IQGA1_HUMAN	IQ motif containing GTPase activating protein 1	843	IQ 4.				energy reserve metabolic process|regulation of insulin secretion|small GTPase mediated signal transduction	actin filament|cytoplasm|midbody|nucleus|plasma membrane	calmodulin binding|GTPase inhibitor activity|protein phosphatase binding|Ras GTPase activator activity			ovary(2)|lung(2)|central_nervous_system(2)|pancreas(1)|skin(1)	8	Melanoma(11;0.00551)|Lung NSC(78;0.0237)|all_lung(78;0.0488)		BRCA - Breast invasive adenocarcinoma(143;0.0745)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			TATCAAAATCCAGGCTTTTAT	0.423000													9	41					0	0	1	0	0
CHD2	1106	broad.mit.edu	37	15	93522380	93522380	+	Silent	SNP	T	C	C	rs112279925		TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr15:93522380T>C	uc002bsp.2	+	22	3318	c.2743T>C	c.(2743-2745)TTA>CTA	p.L915L	CHD2_uc002bso.1_Silent_p.L915L|CHD2_uc010bog.1_3'UTR|CHD2_uc010boh.1_Silent_p.L109L	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	915	Helicase C-terminal.				regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			TATTTACCGCTTAGTTACAAA	0.463000													197	131					0	0	1	0	0
PGPEP1L	145814	broad.mit.edu	37	15	99514379	99514379	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr15:99514379G>A	uc002bum.2	-	3	236	c.30C>T	c.(28-30)TCC>TCT	p.S10S	PGPEP1L_uc010bop.2_5'UTR|PGPEP1L_uc002bun.2_RNA	NM_001102612	NP_001096082	A6NFU8	PGPIL_HUMAN	pyroglutamyl-peptidase 1-like protein	10					proteolysis		cysteine-type peptidase activity				0						GGCCCAGCTTGGAGAGCTCCT	0.612000													7	21					0	0	1	0	0
CHSY1	22856	broad.mit.edu	37	15	101718317	101718317	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr15:101718317T>C	uc002bwt.1	-	4	2168	c.1685A>G	c.(1684-1686)AAT>AGT	p.N562S	CHSY1_uc010usd.1_Missense_Mutation_p.N290S	NM_014918	NP_055733	Q86X52	CHSS1_HUMAN	chondroitin sulfate synthase 1	562	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity				0	Lung NSC(78;0.00217)|all_lung(78;0.00271)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			GACGTTCTGATTGGGGATAAG	0.418000													58	42					0	0	1	0	0
WDR90	197335	broad.mit.edu	37	16	700084	700084	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:700084G>A	uc002cii.1	+	3	250	c.196G>A	c.(196-198)GGG>AGG	p.G66R	WDR90_uc002cig.1_Missense_Mutation_p.G66R|WDR90_uc002cih.1_Missense_Mutation_p.G66R|WDR90_uc002cij.1_RNA	NM_145294	NP_660337	Q96KV7	WDR90_HUMAN	WD repeat domain 90	66										ovary(1)	1		Hepatocellular(780;0.0218)				CCAGTCTCTGGGGCTGACGGG	0.612000													234	314					0	0	1	0	0
MSLNL	401827	broad.mit.edu	37	16	830786	830786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:830786C>T	uc002cjz.1	-	3	215	c.215G>A	c.(214-216)CGT>CAT	p.R72H		NM_001025190	NP_001020361	Q96KJ4	MSLNL_HUMAN	mesothelin-like	Error:Variant_position_missing_in_Q96KJ4_after_alignment					cell adhesion	integral to membrane				breast(3)|ovary(1)	4						GGGTAGGTGACGGTGTGCACG	0.592000													199	236					0	0	1	0	0
C16orf42	115939	broad.mit.edu	37	16	1400944	1400944	+	Silent	SNP	G	A	A	rs143210621		TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:1400944G>A	uc002cll.2	-	3	458	c.390C>T	c.(388-390)GAC>GAT	p.D130D	GNPTG_uc002clm.2_5'Flank	NM_001001410	NP_001001410	Q9UJK0	TSR3_HUMAN	hypothetical protein LOC115939	130					rRNA processing						0		Hepatocellular(780;0.0893)				ACGGTGTCTCGTCCAGCCTGG	0.632000													53	83					0	0	1	0	0
VASN	114990	broad.mit.edu	37	16	4431025	4431025	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:4431025C>T	uc002cwj.1	+	2	302	c.147C>T	c.(145-147)GAC>GAT	p.D49D	CORO7_uc002cwe.2_Intron|CORO7_uc002cwf.2_Intron|CORO7_uc002cwg.3_Intron|CORO7_uc002cwh.3_Intron|CORO7_uc010uxh.1_Intron|CORO7_uc010uxi.1_Intron|CORO7_uc002cwi.1_Intron|CORO7_uc010uxj.1_Intron|CORO7_uc010btp.1_Intron	NM_138440	NP_612449	Q6EMK4	VASN_HUMAN	slit-like 2 precursor	49	LRRNT.|Extracellular (Potential).					extracellular region|integral to membrane					0						TGCCCCGAGACGTGCCACCCG	0.697000													8	9					0	0	1	0	0
PPL	5493	broad.mit.edu	37	16	4944619	4944619	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:4944619C>T	uc002cyd.1	-	12	1333	c.1243G>A	c.(1243-1245)GGC>AGC	p.G415S		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	415	Spectrin 2.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						GAGATCAGGCCCTGGCGGGGG	0.677000													29	29					0	0	1	0	0
SEC14L5	9717	broad.mit.edu	37	16	5058535	5058535	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:5058535C>T	uc002cye.2	+	14	1866	c.1686C>T	c.(1684-1686)GCC>GCT	p.A562A		NM_014692	NP_055507	O43304	S14L5_HUMAN	SEC14-like 5	562	GOLD.					integral to membrane|intracellular	transporter activity				0						GGCTGGGCGCCCGGGAACCGG	0.662000													32	25					0	0	1	0	0
SEC14L5	9717	broad.mit.edu	37	16	5064884	5064884	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:5064884C>T	uc002cye.2	+	16	2184	c.2004C>T	c.(2002-2004)TCC>TCT	p.S668S		NM_014692	NP_055507	O43304	S14L5_HUMAN	SEC14-like 5	668	Ser-rich.					integral to membrane|intracellular	transporter activity				0						GCCTGGAATCCTGCACCAGCG	0.637000													50	54					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857975	9857975	+	Silent	SNP	G	A	A	rs150487431		TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:9857975G>A	uc002czo.3	-	13	3974	c.3426C>T	c.(3424-3426)CCC>CCT	p.P1142P	GRIN2A_uc010uym.1_Silent_p.P1142P|GRIN2A_uc010uyn.1_Silent_p.P985P|GRIN2A_uc002czr.3_Silent_p.P1142P	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1142	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCACGTTCTCGGGCAGGGTCA	0.522000													80	75					0	0	1	0	0
TXNDC11	51061	broad.mit.edu	37	16	11778030	11778030	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:11778030G>A	uc010buu.1	-	12	2368	c.2306C>T	c.(2305-2307)CCC>CTC	p.P769L	TXNDC11_uc002dbg.1_Missense_Mutation_p.P742L	NM_015914	NP_056998	Q6PKC3	TXD11_HUMAN	thioredoxin domain containing 11	769	Thioredoxin 2.				cell redox homeostasis	endoplasmic reticulum membrane|integral to membrane					0						CCTGTTGCAGGGAAAAAACAA	0.408000													6	33					0	0	1	0	0
XYLT1	64131	broad.mit.edu	37	16	17232251	17232251	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:17232251G>A	uc002dfa.2	-	8	1810	c.1725C>T	c.(1723-1725)TCC>TCT	p.S575S		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	575	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						AGTCATTGGGGGAGCAGCCGC	0.572000													27	69					0	0	1	0	0
XYLT1	64131	broad.mit.edu	37	16	17235161	17235161	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:17235161C>T	uc002dfa.2	-	7	1521	c.1436G>A	c.(1435-1437)GGA>GAA	p.G479E		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	479	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						CCGCCGATCTCCCAGGCGCCA	0.597000													40	53					0	0	1	0	0
SYT17	51760	broad.mit.edu	37	16	19195389	19195389	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:19195389G>C	uc002dfw.2	+	5	1202	c.871G>C	c.(871-873)GGG>CGG	p.G291R	SYT17_uc002dfx.2_Missense_Mutation_p.G230R|SYT17_uc002dfy.2_Missense_Mutation_p.G287R|SYT17_uc002dfv.1_Missense_Mutation_p.G230R	NM_016524	NP_057608	Q9BSW7	SYT17_HUMAN	B/K protein	291	C2 1.					membrane|synaptic vesicle	transporter activity			ovary(1)	1						CTGTGTCATTGGGAAAGTTTC	0.562000													129	155					0	0	1	0	0
GDE1	51573	broad.mit.edu	37	16	19522235	19522235	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:19522235G>A	uc002dgh.2	-	3	633	c.469C>T	c.(469-471)CTA>TTA	p.L157L	GDE1_uc002dgi.2_Silent_p.L47L	NM_016641	NP_057725	Q9NZC3	GDE1_HUMAN	glycerophosphodiester phosphodiesterase 1	157	Lumenal (Potential).|GDPD.				glycerol metabolic process|lipid metabolic process	cytoplasm|integral to membrane	glycerophosphodiester phosphodiesterase activity|glycerophosphoinositol glycerophosphodiesterase activity|metal ion binding			ovary(2)|central_nervous_system(1)	3						GCTTCCCTTAGGGTAGGGATC	0.383000													55	88					0	0	1	0	0
ACSM1	116285	broad.mit.edu	37	16	20634840	20634840	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:20634840C>T	uc002dhm.1	-	13	1770	c.1702G>A	c.(1702-1704)GAA>AAA	p.E568K	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Missense_Mutation_p.E568K	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	568					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						TTCCGAAGTTCCTTCCGTTCA	0.488000													40	53					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21136605	21136605	+	Missense_Mutation	SNP	C	T	T	rs139455188	by1000genomes	TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:21136605C>T	uc010vbe.1	-	9	1295	c.1295G>A	c.(1294-1296)CGA>CAA	p.R432Q	DNAH3_uc002die.2_Missense_Mutation_p.R403Q	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	432	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CTCAATGTTTCGACTTGAGTC	0.473000													62	68					0	0	1	0	0
CLN3	1201	broad.mit.edu	37	16	28497790	28497791	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:28497790_28497791GG>AA	uc002dpo.2	-	8	877_878	c.554_555CC>TT	c.(553-555)TCC>TTT	p.S185F	uc010vct.1_Intron|CLN3_uc002dpl.2_Missense_Mutation_p.S107F|CLN3_uc010vcu.1_Missense_Mutation_p.S85F|CLN3_uc002dpn.2_Intron|CLN3_uc002dpm.2_Missense_Mutation_p.S131F|CLN3_uc010vcv.1_Missense_Mutation_p.S161F|CLN3_uc010byd.2_Missense_Mutation_p.S185F|CLN3_uc002dpp.2_Missense_Mutation_p.S185F|CLN3_uc002dpt.1_Missense_Mutation_p.S85F|CLN3_uc002dpq.1_Intron|CLN3_uc010bye.1_Missense_Mutation_p.S185F|CLN3_uc002dpr.1_Intron|CLN3_uc010byf.1_Intron|CLN3_uc002dps.1_Intron|CLN3_uc002dpu.1_Intron|CLN3_uc002dpw.1_Intron|CLN3_uc010vcw.1_Missense_Mutation_p.S131F|CLN3_uc002dqa.2_Missense_Mutation_p.S236F|CLN3_uc010vcx.1_Missense_Mutation_p.S85F|CLN3_uc002dpx.1_Intron|CLN3_uc002dpy.1_Intron|CLN3_uc002dpz.1_RNA	NM_000086	NP_000077	Q13286	CLN3_HUMAN	ceroid-lipofuscinosis, neuronal 3	185	Helical; (Potential).				amyloid precursor protein catabolic process|arginine transport|associative learning|autophagic vacuole fusion|cell death|cellular amino acid metabolic process|cytosolic calcium ion homeostasis|galactosylceramide metabolic process|globoside metabolic process|glucosylceramide metabolic process|ionotropic glutamate receptor signaling pathway|lysosomal lumen acidification|lysosomal lumen pH elevation|negative regulation of catalytic activity|negative regulation of macroautophagy|negative regulation of neuron apoptosis|negative regulation of proteolysis|neuromuscular process controlling balance|neurotransmitter metabolic process|protein catabolic process|protein folding|protein processing|receptor-mediated endocytosis|regulation of action potential|sphingomyelin metabolic process|vacuolar transport	autophagic vacuole|caveola|cytosol|early endosome|Golgi membrane|Golgi stack|integral to endoplasmic reticulum membrane|late endosome|lysosomal membrane|membrane fraction|mitochondrion|neuron projection|nucleus|synaptic vesicle|trans-Golgi network	unfolded protein binding				0						CAGTCCCTGAGGACCACCAGGA	0.658000													10	16					0	0	1	0	0
ATP2A1	487	broad.mit.edu	37	16	28898548	28898548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:28898548C>T	uc002dro.1	+	7	767	c.583C>T	c.(583-585)CCT>TCT	p.P195S	uc010vct.1_Intron|ATP2A1_uc002drn.1_Missense_Mutation_p.P195S|ATP2A1_uc002drp.1_Missense_Mutation_p.P70S|ATP2A1_uc010bym.1_5'Flank	NM_173201	NP_775293	O14983	AT2A1_HUMAN	ATPase, Ca++ transporting, fast twitch 1 isoform	195	Cytoplasmic (By similarity).				apoptosis in response to endoplasmic reticulum stress|apoptotic mitochondrial changes|ATP biosynthetic process|calcium ion import|elevation of endoplasmic reticulum calcium ion concentration|elevation of mitochondrial calcium ion concentration|maintenance of mitochondrion location|negative regulation of striated muscle contraction|platelet activation|positive regulation of fast-twitch skeletal muscle fiber contraction|reduction of endoplasmic reticulum calcium ion concentration|relaxation of skeletal muscle|response to endoplasmic reticulum stress	endoplasmic reticulum membrane|ER-Golgi intermediate compartment|H zone|I band|microsome|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum|sarcoplasmic reticulum membrane	ATP binding|ATP binding|calcium ion binding|calcium ion binding|calcium-transporting ATPase activity|protein homodimerization activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GGAGCCCGTTCCTGACCCCCG	0.572000													71	94					0	0	1	0	0
HERC2P4	440362	broad.mit.edu	37	16	32163545	32163545	+	RNA	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:32163545C>T	uc002ecx.2	-	2		c.226G>A				NR_002827				Homo sapiens hect domain and RLD 2 pseudogene 4, mRNA (cDNA clone IMAGE:5416019).												0						CCAAACTCATCGTGCACAATT	0.582000													31	81					0	0	1	0	0
SHCBP1	79801	broad.mit.edu	37	16	46629531	46629531	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:46629531G>C	uc002eec.3	-	10	1437	c.1397C>G	c.(1396-1398)ACG>AGG	p.T466R		NM_024745	NP_079021	Q8NEM2	SHCBP_HUMAN	SHC SH2-domain binding protein 1	466	PbH1 2.									ovary(1)|breast(1)	2		all_cancers(37;0.00404)|all_epithelial(9;0.00527)|all_lung(18;0.0413)|Lung NSC(13;0.213)				GACTCCGGTCGTCTCACACTG	0.463000													4	83					0	0	1	0	0
MMP2	4313	broad.mit.edu	37	16	55532201	55532201	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:55532201G>A	uc002ehz.3	+	11	1921	c.1610G>A	c.(1609-1611)GGG>GAG	p.G537E	MMP2_uc010vhd.1_Missense_Mutation_p.G461E|MMP2_uc010ccc.2_Missense_Mutation_p.G487E|MMP2_uc002eia.3_Missense_Mutation_p.G34E	NM_004530	NP_004521	P08253	MMP2_HUMAN	matrix metalloproteinase 2 isoform a	537	Required for inhibitor TIMP2 binding.|Hemopexin-like 2.				angiogenesis|collagen catabolic process|proteolysis	extracellular space|membrane|nucleus|proteinaceous extracellular matrix	metalloendopeptidase activity|protein binding|zinc ion binding			large_intestine(3)|ovary(3)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	11		Renal(780;0.00183)|Breast(268;0.00354)|Hepatocellular(780;0.00826)|all_neural(199;0.0189)		UCEC - Uterine corpus endometrioid carcinoma (183;0.0185)|all cancers(182;7.16e-45)|Epithelial(162;5.26e-37)|GBM - Glioblastoma multiforme(240;9e-08)|Kidney(780;0.00227)|BRCA - Breast invasive adenocarcinoma(181;0.00786)	Marimastat(DB00786)|Sulindac(DB00605)	TCCACCCCAGGGAATGAATAC	0.612000													41	93					0	0	1	0	0
PRSS54	221191	broad.mit.edu	37	16	58314339	58314339	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:58314339C>T	uc002enf.2	-	7	1372	c.977G>A	c.(976-978)GGA>GAA	p.G326E	PRSS54_uc002eng.2_Missense_Mutation_p.G326E|PRSS54_uc010vie.1_Missense_Mutation_p.G227E|CCDC113_uc002ene.2_3'UTR|CCDC113_uc010vid.1_3'UTR	NM_001080492	NP_001073961	Q6PEW0	PRS54_HUMAN	plasma kallikrein-like protein 4 precursor	326					proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						AGAGCTGTTTCCTAGTCGTGA	0.448000													41	54					0	0	1	0	0
CMTM2	146225	broad.mit.edu	37	16	66621933	66621933	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:66621933G>A	uc002ept.2	+	4	818	c.658G>A	c.(658-660)GAA>AAA	p.E220K	CMTM2_uc010cdu.2_Missense_Mutation_p.E167K	NM_144673	NP_653274	Q8TAZ6	CKLF2_HUMAN	chemokine-like factor superfamily 2	220					chemotaxis	extracellular space|integral to membrane	cytokine activity			ovary(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.068)|Epithelial(162;0.212)		TCCAGGAAAGGAAAAAGGACC	0.527000													35	49					0	0	1	0	0
NAE1	8883	broad.mit.edu	37	16	66842427	66842427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:66842427G>A	uc002eqf.2	-	17	1404	c.1327C>T	c.(1327-1329)CCA>TCA	p.P443S	NAE1_uc002eqe.2_Missense_Mutation_p.P437S|NAE1_uc002eqg.2_Missense_Mutation_p.P354S|NAE1_uc010cdv.2_Missense_Mutation_p.P446S	NM_003905	NP_003896	Q13564	ULA1_HUMAN	NEDD8 activating enzyme E1 subunit 1 isoform a	443					apoptosis|cell cycle|DNA replication|mitotic cell cycle DNA replication checkpoint|protein neddylation|signal transduction	cytoplasm|insoluble fraction|plasma membrane	catalytic activity|protein heterodimerization activity			ovary(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0914)|Epithelial(162;0.214)	Adenosine triphosphate(DB00171)	TTCTTACCTGGATATCTACCC	0.308000													54	85					0	0	1	0	0
CES8	283848	broad.mit.edu	37	16	67038037	67038037	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:67038037C>T	uc002eqv.2	+	9	1033	c.990C>T	c.(988-990)GAC>GAT	p.D330D	CES8_uc010vix.1_Silent_p.D330D|CES8_uc002eqw.2_Silent_p.D330D|CES8_uc002eqy.2_Silent_p.D232D|CES8_uc002eqx.2_Silent_p.D136D|CES8_uc010viy.1_Silent_p.D236D|CES8_uc010viz.1_Silent_p.D232D|CES8_uc002eqz.2_5'Flank	NM_173815	NP_776176	Q5XG92	EST4A_HUMAN	carboxylesterase 8 (putative)	330						extracellular region	carboxylesterase activity				0						TCCCAGATGACCCTTTGGTGC	0.512000													88	109					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70841837	70841837	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:70841837G>A	uc002ezr.2	-	86	15137	c.15009C>T	c.(15007-15009)ATC>ATT	p.I5003I	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	5004										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GCGATGATAGGATCAGGATGC	0.577000													58	92					0	0	1	0	0
ZFHX3	463	broad.mit.edu	37	16	72832404	72832404	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:72832404C>A	uc002fck.2	-	9	4850	c.4177G>T	c.(4177-4179)GTG>TTG	p.V1393L	ZFHX3_uc002fcl.2_Missense_Mutation_p.V479L	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	1393					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				CGATCTGACACCGGCAGCTGA	0.493000													38	56					1.57945e-13	1.59013e-13	1	1	0
ZFHX3	463	broad.mit.edu	37	16	72984850	72984850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:72984850G>A	uc002fck.2	-	3	3407	c.2734C>T	c.(2734-2736)CCC>TCC	p.P912S	ZFHX3_uc002fcl.2_5'UTR	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	912					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				ATGTCTAGGGGGATCTCACCG	0.647000													66	83					0	0	1	0	0
MON1B	22879	broad.mit.edu	37	16	77228347	77228347	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:77228347C>T	uc002fez.2	+	4	921	c.591C>T	c.(589-591)ATC>ATT	p.I197I	MON1B_uc010vnf.1_Silent_p.I88I|MON1B_uc010vng.1_Silent_p.I51I|MON1B_uc002ffa.2_Silent_p.I77I	NM_014940	NP_055755	Q7L1V2	MON1B_HUMAN	MON1 homolog B	197							protein binding				0						ACGCACAGATCGTGAGCACAC	0.607000													80	87					0	0	1	0	0
SDR42E1	93517	broad.mit.edu	37	16	82033760	82033760	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:82033760G>A	uc002fgu.2	-	3	266	c.138C>T	c.(136-138)ACC>ACT	p.T46T		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	46					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						CTTCTGGAATGGTTTGAGCAG	0.458000													77	117					0	0	1	0	0
OSGIN1	29948	broad.mit.edu	37	16	83994304	83994304	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:83994304G>A	uc002fha.2	+	5	967	c.584G>A	c.(583-585)CGG>CAG	p.R195Q	OSGIN1_uc002fhb.2_Missense_Mutation_p.R112Q|OSGIN1_uc002fhc.2_Missense_Mutation_p.R112Q	NM_013370	NP_037502	Q9UJX0	OSGI1_HUMAN	oxidative stress induced growth inhibitor 1	195					cell differentiation|multicellular organismal development|negative regulation of cell growth		growth factor activity				0						TGGAAGCACCGGAAGGAGCAC	0.657000													30	54					0	0	1	0	0
SPIRE2	84501	broad.mit.edu	37	16	89922068	89922068	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:89922068A>G	uc002foz.1	+	6	1004	c.952A>G	c.(952-954)ATC>GTC	p.I318V	SPIRE2_uc010civ.1_Missense_Mutation_p.I233V|SPIRE2_uc010ciw.1_Missense_Mutation_p.I318V|SPIRE2_uc002fpa.1_Missense_Mutation_p.I270V|SPIRE2_uc010cix.1_Missense_Mutation_p.I185V	NM_032451	NP_115827	Q8WWL2	SPIR2_HUMAN	spire homolog 2	318					transport	cytoplasm|cytoskeleton	actin binding			central_nervous_system(1)	1		Lung NSC(15;5.15e-06)|all_lung(18;8.38e-06)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0286)		CCTGGACTTTATCCGCTCACG	0.677000													33	42					0	0	1	0	0
PRDM7	11105	broad.mit.edu	37	16	90126823	90126823	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:90126823T>G	uc010cje.2	-	9	1179	c.1159A>C	c.(1159-1161)ATG>CTG	p.M387L	PRDM7_uc002fqo.2_Intron|PRDM7_uc010cjf.2_Intron|PRDM7_uc010cjg.1_Missense_Mutation_p.M181L	NM_001098173	NP_001091643	Q9NQW5	PRDM7_HUMAN	PR domain containing 7 isoform 1	387						chromosome|nucleus	nucleic acid binding			ovary(1)	1		all_cancers(9;4.44e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.00118)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0278)		CTCATCCCCATACCAGACCAG	0.522000													3	124					0	0	1	0	0
PRDM7	11105	broad.mit.edu	37	16	90128336	90128336	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:90128336G>A	uc010cje.2	-	7	895	c.875C>T	c.(874-876)TCC>TTC	p.S292F	PRDM7_uc002fqo.2_Missense_Mutation_p.S86F|PRDM7_uc010cjf.2_Missense_Mutation_p.S175F|PRDM7_uc010cjg.1_Missense_Mutation_p.S86F|PRDM7_uc010cjh.1_RNA	NM_001098173	NP_001091643	Q9NQW5	PRDM7_HUMAN	PR domain containing 7 isoform 1	292	SET.					chromosome|nucleus	nucleic acid binding			ovary(1)	1		all_cancers(9;4.44e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.00118)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0278)		TACTAGCCAGGAATATCCACT	0.507000													91	125					0	0	1	0	0
YBX2	51087	broad.mit.edu	37	17	7193752	7193752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:7193752G>A	uc002gfq.2	-	5	619	c.562C>T	c.(562-564)CCC>TCC	p.P188S		NM_015982	NP_057066	Q9Y2T7	YBOX2_HUMAN	Y box binding protein 2	188	Pro-rich.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter|translational attenuation	cytoplasm|nucleus	DNA binding				0						GCAACTGAGGGAGGCCGGGGG	0.657000													94	9					0	0	1	0	0
AMAC1L3	643664	broad.mit.edu	37	17	7386012	7386012	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:7386012G>A	uc010cmj.1	+	2	824	c.709G>A	c.(709-711)GGC>AGC	p.G237S	ZBTB4_uc002ghd.3_Intron|POLR2A_uc002ghe.2_5'Flank|POLR2A_uc002ghf.3_5'Flank	NM_001102614	NP_001096084	P0C7Q6	AMCL3_HUMAN	acyl-malonyl condensing enzyme 1-like 3	237	Helical; (Potential).					integral to membrane					0		Prostate(122;0.173)				CTCTGTGCCAGGCCTCTTTGT	0.612000													88	5					0	0	1	0	0
ODF4	146852	broad.mit.edu	37	17	8243772	8243772	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:8243772C>T	uc002gle.1	+	1	585	c.403C>T	c.(403-405)CTC>TTC	p.L135F		NM_153007	NP_694552	Q2M2E3	ODFP4_HUMAN	outer dense fiber of sperm tails 4	135					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)	1						GTCCATGGGGCTCCTGCACTT	0.572000													44	6					0	0	1	0	0
MYH3	4621	broad.mit.edu	37	17	10542696	10542696	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:10542696G>A	uc002gmq.1	-	23	3098	c.3021C>T	c.(3019-3021)GCC>GCT	p.A1007A		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	1007	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						GGTCATCCAAGGCCTGCTGGT	0.433000													44	4					0	0	1	0	0
ERAL1	26284	broad.mit.edu	37	17	27183362	27183362	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:27183362C>T	uc002hcy.1	+	2	374	c.364C>T	c.(364-366)CCG>TCG	p.P122S	ERAL1_uc002hcx.1_Missense_Mutation_p.P122S|ERAL1_uc002hcz.1_RNA|ERAL1_uc002hda.1_5'Flank|ERAL1_uc002hdb.1_5'Flank	NM_005702	NP_005693	O75616	ERAL1_HUMAN	Era-like 1	122	GTP (Potential).				ribosomal small subunit assembly	mitochondrial inner membrane|mitochondrial matrix	GTP binding|ribosomal small subunit binding|rRNA binding			skin(1)	1	all_cancers(5;2.12e-15)|all_epithelial(6;3.44e-19)|Lung NSC(42;0.01)		Epithelial(11;1.12e-05)|all cancers(11;5.32e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000272)|OV - Ovarian serous cystadenocarcinoma(11;0.105)			CCTGGGAGCCCCGAATGCAGG	0.522000													182	11					0	0	1	0	0
MYO18A	399687	broad.mit.edu	37	17	27448185	27448185	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:27448185G>A	uc002hdt.1	-	6	1574	c.1416C>T	c.(1414-1416)CCC>CCT	p.P472P	MYO18A_uc010wbc.1_Silent_p.P14P|MYO18A_uc002hds.2_Silent_p.P14P|MYO18A_uc010csa.1_Silent_p.P472P|MYO18A_uc002hdu.1_Silent_p.P472P|MYO18A_uc010wbd.1_Silent_p.P141P	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	472	Myosin head-like.				anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			CATAGATGTGGGGTGCCATGT	0.567000													25	3					0	0	1	0	0
NF1	4763	broad.mit.edu	37	17	29562694	29562694	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:29562694G>A	uc002hgg.2	+	28	4107	c.3774G>A	c.(3772-3774)TGG>TGA	p.W1258*	NF1_uc002hgh.2_Nonsense_Mutation_p.W1258*|NF1_uc010csn.1_Nonsense_Mutation_p.W1118*|NF1_uc002hgi.1_Nonsense_Mutation_p.W291*	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1258	Ras-GAP.				actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)|p.W1258*(1)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		AACTGCTCTGGAACATGTTTT	0.408000			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			245	34					0	0	1	0	0
CCT6B	10693	broad.mit.edu	37	17	33255107	33255107	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:33255107A>G	uc002hig.2	-	14	1647	c.1553T>C	c.(1552-1554)GTT>GCT	p.V518A	CCT6B_uc010ctg.2_Missense_Mutation_p.V481A|CCT6B_uc010wcc.1_Missense_Mutation_p.V473A	NM_006584	NP_006575	Q92526	TCPW_HUMAN	chaperonin containing TCP1, subunit 6B	518					chaperone-mediated protein complex assembly|protein folding|spermatogenesis	cytoplasm	ATP binding|protein transporter activity|unfolded protein binding			pancreas(1)	1		Ovarian(249;0.17)				AATTTCATCAACCAGGAGAAT	0.388000													108	12					0	0	1	0	0
PSMD3	5709	broad.mit.edu	37	17	38151308	38151308	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:38151308C>T	uc002htn.1	+	7	1247	c.1083C>T	c.(1081-1083)TTC>TTT	p.F361F	PSMD3_uc010wen.1_RNA|PSMD3_uc010weo.1_Silent_p.F262F	NM_002809	NP_002800	O43242	PSMD3_HUMAN	proteasome 26S non-ATPase subunit 3	361	PCI.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome complex	enzyme regulator activity|protein binding			ovary(1)|pancreas(1)	2	Colorectal(19;0.000442)					TGCCCTATTTCCTTCTGACTC	0.587000													149	14					0	0	1	0	0
CNTNAP1	8506	broad.mit.edu	37	17	40837994	40837994	+	Silent	SNP	A	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:40837994A>T	uc002iay.2	+	6	951	c.735A>T	c.(733-735)CCA>CCT	p.P245P	CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	245	Laminin G-like 1.|Extracellular (Potential).				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		CTATCCAGCCAAGACCAGGTC	0.552000													189	21					0	0	1	0	0
KIF18B	146909	broad.mit.edu	37	17	43011673	43011673	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:43011673C>T	uc010wji.1	-	6	914	c.813G>A	c.(811-813)CTG>CTA	p.L271L	KIF18B_uc002iht.2_Silent_p.L271L|KIF18B_uc010wjh.1_Silent_p.L271L	NM_001080443	NP_001073912			kinesin family member 18B											ovary(2)	2		Prostate(33;0.155)				CCCCCTCCCGCAGCCGCTCCC	0.617000													18	23					0	0	1	0	0
CDC27	996	broad.mit.edu	37	17	45234366	45234366	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:45234366G>A	uc002ild.3	-	7	882	c.755C>T	c.(754-756)TCC>TTC	p.S252F	CDC27_uc002ile.3_Missense_Mutation_p.S252F|CDC27_uc002ilf.3_Missense_Mutation_p.S252F|CDC27_uc010wkp.1_Missense_Mutation_p.S191F|CDC27_uc010wkq.1_RNA	NM_001256	NP_001247	P30260	CDC27_HUMAN	cell division cycle protein 27 isoform 2	252					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			lung(2)|breast(2)|ovary(1)	5						AGATAATATGGAAGTTCCTGT	0.383000													8	82					0	0	1	0	0
COL1A1	1277	broad.mit.edu	37	17	48273994	48273994	+	Missense_Mutation	SNP	C	T	T	rs72645335		TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:48273994C>T	uc002iqm.2	-	12	968	c.842G>A	c.(841-843)GGT>GAT	p.G281D		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	281	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	ACCAGCAGGACCAGCATCTCC	0.498000			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						310	39					0	0	1	0	0
UTP18	51096	broad.mit.edu	37	17	49371371	49371371	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:49371371C>T	uc002its.2	+	12	1660	c.1611C>T	c.(1609-1611)GCC>GCT	p.A537A		NM_016001	NP_057085	Q9Y5J1	UTP18_HUMAN	UTP18, small subunit processome component	537					rRNA processing	nucleolus					0			BRCA - Breast invasive adenocarcinoma(22;2.09e-07)			GATACTTTGCCTTGGGGAATG	0.353000													32	6					0	0	1	0	0
CUEDC1	404093	broad.mit.edu	37	17	55943871	55943871	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:55943871G>A	uc002ivd.1	-	10	1847	c.1128C>T	c.(1126-1128)CCC>CCT	p.P376P	CUEDC1_uc002ive.1_Silent_p.P376P	NM_017949	NP_060419	Q9NWM3	CUED1_HUMAN	CUE domain-containing 1	376										skin(2)	2						CCTCCACCTTGGGTGCCTCCT	0.632000													69	6					0	0	1	0	0
C17orf71	55181	broad.mit.edu	37	17	57287389	57287389	+	Translation_Start_Site	SNP	G	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:57287389G>T	uc002ixi.2	+	1	19	c.-23G>T	c.(-25--21)AAGGA>AATGA			NM_018149	NP_060619	Q8ND04	SMG8_HUMAN	SMG8 protein						nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of protein kinase activity		protein binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					CGGACCGGAAGGACTCTAGAG	0.547000													28	3					3.90053e-15	3.9322e-15	1	1	0
Unknown	0	broad.mit.edu	37	17	58512742	58512742	+	RNA	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:58512742C>T	uc002iyr.1	-	1		c.616G>A								Homo sapiens cDNA FLJ33664 fis, clone BRAMY2027451, moderately similar to 60S RIBOSOMAL PROTEIN L12.																		TTCTGTGGTTCGTCCTTCGTC	0.542000													23	0					0	0	1	0	0
ERN1	2081	broad.mit.edu	37	17	62121500	62121500	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:62121500C>T	uc002jdz.2	-	22	2895	c.2782G>A	c.(2782-2784)GAC>AAC	p.D928N	uc002jdy.1_5'Flank	NM_001433	NP_001424	O75460	ERN1_HUMAN	endoplasmic reticulum to nucleus signalling 1	928	Cytoplasmic (Potential).|KEN.				activation of signaling protein activity involved in unfolded protein response|apoptosis|cell cycle arrest|induction of apoptosis|mRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to endoplasmic reticulum membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(4)|lung(2)|stomach(1)|ovary(1)|kidney(1)	9						CACACGAAGTCGTCGGGGAGG	0.597000													70	6					0	0	1	0	0
SSTR2	6752	broad.mit.edu	37	17	71166472	71166472	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:71166472G>A	uc002jje.2	+	2	1374	c.1014G>A	c.(1012-1014)GGG>GGA	p.G338G		NM_001050	NP_001041	P30874	SSR2_HUMAN	somatostatin receptor 2	338	Cytoplasmic (Potential).				digestion|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	PDZ domain binding|somatostatin receptor activity				0			LUSC - Lung squamous cell carcinoma(166;0.197)			CAGATGATGGGGAGCGGAGTG	0.527000													81	5					0	0	1	0	0
CD300C	10871	broad.mit.edu	37	17	72541018	72541018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:72541018G>A	uc002jky.1	-	2	491	c.130C>T	c.(130-132)CGC>TGC	p.R44C		NM_006678	NP_006669	Q08708	CLM6_HUMAN	CD300C antigen precursor	44	Extracellular (Potential).|Ig-like V-type.				cellular defense response	integral to plasma membrane	transmembrane receptor activity				0						TTCTCATAGCGACACTGCACA	0.532000													104	5					0	0	1	0	0
USH1G	124590	broad.mit.edu	37	17	72915624	72915624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:72915624C>T	uc002jme.1	-	2	1490	c.1307G>A	c.(1306-1308)CGA>CAA	p.R436Q	USH1G_uc010wro.1_Missense_Mutation_p.R333Q	NM_173477	NP_775748	Q495M9	USH1G_HUMAN	Usher syndrome 1G protein	436	SAM.				equilibrioception|photoreceptor cell maintenance|sensory perception of sound	actin cytoskeleton				skin(2)	2	all_lung(278;0.172)|Lung NSC(278;0.207)					GATCTTCTTTCGGGGCCCCAG	0.682000													79	8					0	0	1	0	0
SAP30BP	29115	broad.mit.edu	37	17	73700872	73700872	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:73700872A>G	uc002jpe.2	+	9	692	c.638A>G	c.(637-639)AAG>AGG	p.K213R	SAP30BP_uc002jpc.1_RNA|SAP30BP_uc010wsf.1_RNA|SAP30BP_uc010wsg.1_RNA|SAP30BP_uc002jpf.2_Missense_Mutation_p.K197R	NM_013260	NP_037392	Q9UHR5	S30BP_HUMAN	transcriptional regulator protein	213					apoptosis|induction of apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			ovary(1)	1	all_cancers(13;6.42e-08)		all cancers(21;4.25e-07)|Epithelial(20;9.57e-07)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			AAATTGGAAAAGGCCAAAAAG	0.512000													3	96					0	0	1	0	0
SEPT9	10801	broad.mit.edu	37	17	75303273	75303273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:75303273G>A	uc002jts.3	+	2	196	c.70G>A	c.(70-72)GGC>AGC	p.G24S	SEPT9_uc010wtk.1_Intron|SEPT9_uc002jtt.3_5'UTR	NM_001113491	NP_001106963	Q9UHD8	SEPT9_HUMAN	septin 9 isoform a	24					cell cycle|cell division|protein heterooligomerization	microtubule|perinuclear region of cytoplasm|stress fiber	GTP binding|GTPase activity|protein binding|protein binding			breast(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(99;0.153)			TGACTCCAGTGGCCCAGGTAG	0.642000													127	9					0	0	1	0	0
FASN	2194	broad.mit.edu	37	17	80039493	80039493	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:80039493G>A	uc002kdu.2	-	37	6507	c.6390C>T	c.(6388-6390)GCC>GCT	p.A2130A	FASN_uc002kdv.1_RNA	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	2130	Acyl carrier.				energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	TGTGTGCCACGGCCTCCACCA	0.637000													57	8					0	0	1	0	0
C18orf56	494514	broad.mit.edu	37	18	657986	657986	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr18:657986G>A	uc002kkr.2	-	1	355	c.262C>T	c.(262-264)CCT>TCT	p.P88S	TYMS_uc010dka.1_Intron|TYMS_uc010dkb.1_Intron|TYMS_uc010dkc.1_Intron	NM_001012716	NP_001012734	Q8TAI1	CR056_HUMAN	hypothetical protein LOC494514	88							protein binding				0						TGGCGGGAAGGAGGGAGGCGC	0.721000													12	4					0	0	1	0	0
MYOM1	8736	broad.mit.edu	37	18	3067469	3067469	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr18:3067469C>T	uc002klp.2	-	38	5183	c.4849G>A	c.(4849-4851)GAC>AAC	p.D1617N	MYOM1_uc002klq.2_Missense_Mutation_p.D1521N	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	1617	Ig-like C2-type 5.			D -> G (in Ref. 2; BAC86128).		striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						TTGCAGTGGTCGTCTGAGGCC	0.582000													37	77					0	0	1	0	0
MC2R	4158	broad.mit.edu	37	18	13884873	13884873	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr18:13884873C>T	uc002ksp.1	-	2	822	c.645G>A	c.(643-645)ATG>ATA	p.M215I		NM_000529	NP_000520	Q01718	ACTHR_HUMAN	melanocortin 2 receptor	215	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	corticotropin receptor activity|protein binding			ovary(4)|skin(1)	5					Corticotropin(DB01285)|Cosyntropin(DB01284)	TGGCCCCTTTCATGTTGGCTC	0.557000													51	25					0	0	1	0	0
DSC3	1825	broad.mit.edu	37	18	28576896	28576896	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr18:28576896C>T	uc002kwj.3	-	15	2509	c.2354G>A	c.(2353-2355)GGA>GAA	p.G785E	DSC3_uc002kwi.3_Missense_Mutation_p.G785E	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	785	Cytoplasmic (Potential).				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			GGTCTGGTTTCCTCCTTTCAT	0.502000													18	56					0	0	1	0	0
DSG2	1829	broad.mit.edu	37	18	29125756	29125756	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr18:29125756G>A	uc002kwu.3	+	15	2595	c.2407G>A	c.(2407-2409)GAA>AAA	p.E803K	uc002kwv.3_RNA	NM_001943	NP_001934	Q14126	DSG2_HUMAN	desmoglein 2 preproprotein	803	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(2)|breast(1)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			TTCTCAGGAAGAAACTGAATC	0.358000													29	85					0	0	1	0	0
FAM59A	64762	broad.mit.edu	37	18	29848109	29848109	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr18:29848109G>A	uc002kxl.2	-	6	2412	c.2356C>T	c.(2356-2358)CCG>TCG	p.P786S	FAM59A_uc002kxk.1_Missense_Mutation_p.P785S	NM_022751	NP_073588	Q9H706	FA59A_HUMAN	family with sequence similarity 59, member A	786										ovary(1)|skin(1)	2						AGATGGAGCGGAGATGAGAAA	0.552000													32	20					0	0	1	0	0
CELF4	56853	broad.mit.edu	37	18	34853016	34853016	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr18:34853016C>T	uc002lae.2	-	7	1308	c.912G>A	c.(910-912)ATG>ATA	p.M304I	CELF4_uc010dnd.1_Missense_Mutation_p.M302I|CELF4_uc002lag.2_Missense_Mutation_p.M294I|CELF4_uc002laf.2_Missense_Mutation_p.M299I|CELF4_uc002lai.2_Missense_Mutation_p.M289I|CELF4_uc002lah.1_Missense_Mutation_p.M29I|CELF4_uc002laj.1_Missense_Mutation_p.E140K	NM_020180	NP_064565	Q9BZC1	CELF4_HUMAN	bruno-like 4, RNA binding protein isoform 1	304	Ala-rich.				embryo development|germ cell development|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	BRE binding|nucleotide binding|translation repressor activity, nucleic acid binding			ovary(2)	2						CCAGGCCATTCATGTTGAGGG	0.677000													87	49					0	0	1	0	0
SETBP1	26040	broad.mit.edu	37	18	42531194	42531194	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr18:42531194C>G	uc010dni.2	+	4	2185	c.1889C>G	c.(1888-1890)GCG>GGG	p.A630G		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	630						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		CGCAATTTAGCGAAGTTGGCC	0.512000									Schinzel-Giedion_syndrome				61	49					0	0	1	0	0
MALT1	10892	broad.mit.edu	37	18	56363682	56363682	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr18:56363682C>T	uc002lhm.1	+	3	719	c.461C>T	c.(460-462)CCT>CTT	p.P154L	MALT1_uc002lhn.1_Missense_Mutation_p.P154L	NM_006785	NP_006776	Q9UDY8	MALT1_HUMAN	mucosa associated lymphoid tissue lymphoma	154	Ig-like C2-type 1.				activation of NF-kappaB-inducing kinase activity|anti-apoptosis|nuclear export|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of protein ubiquitination|positive regulation of T cell cytokine production|protein oligomerization|proteolysis|T cell receptor signaling pathway	CBM complex|cytosol|nucleus|perinuclear region of cytoplasm	cysteine-type endopeptidase activity|protein self-association|signal transducer activity|ubiquitin-protein ligase activity			ovary(2)|lung(1)|central_nervous_system(1)	4						ACTGGACATCCTTTTGTTCAA	0.323000			T	BIRC3	MALT								46	36					0	0	1	0	0
SERPINB2	5055	broad.mit.edu	37	18	61569069	61569069	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr18:61569069C>T	uc010xeu.1	+	7	964	c.631C>T	c.(631-633)CCA>TCA	p.P211S	SERPINB2_uc002ljo.2_Missense_Mutation_p.P211S|SERPINB2_uc010dqh.2_Missense_Mutation_p.P141S|SERPINB2_uc002ljp.1_Missense_Mutation_p.P16S|SERPINB2_uc002ljq.1_Missense_Mutation_p.P16S	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	211					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	GTGGAAAACTCCATTTGAGAA	0.398000													21	79					0	0	1	0	0
CCDC102B	79839	broad.mit.edu	37	18	66721281	66721281	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr18:66721281G>A	uc002lkk.2	+	10	1672	c.1449G>A	c.(1447-1449)CTG>CTA	p.L483L	CCDC102B_uc002lki.2_Silent_p.L483L	NM_001093729	NP_001087198	Q68D86	C102B_HUMAN	coiled-coil domain containing 102B	483	Potential.									ovary(1)|lung(1)|skin(1)	3		Esophageal squamous(42;0.0559)|Colorectal(73;0.0604)				ATGATTCCCTGAATCAGATCC	0.279000													33	15					0	0	1	0	0
KCNG2	26251	broad.mit.edu	37	18	77623970	77623970	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr18:77623970C>T	uc010xfl.1	+	1	303	c.303C>T	c.(301-303)TTC>TTT	p.F101F		NM_012283	NP_036415	Q9UJ96	KCNG2_HUMAN	potassium voltage-gated channel, subfamily G,	101	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of heart contraction|regulation of insulin secretion	voltage-gated potassium channel complex	delayed rectifier potassium channel activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;6.92e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0244)		CGCTGGCCTTCCGCGACGAGC	0.672000													4	8					0	0	1	0	0
MED16	10025	broad.mit.edu	37	19	875301	875301	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:875301G>A	uc002lqd.1	-	10	1865	c.1714C>T	c.(1714-1716)CCT>TCT	p.P572S	MED16_uc010drw.1_Missense_Mutation_p.P397S|MED16_uc002lqe.2_Missense_Mutation_p.P561S|MED16_uc002lqf.2_Missense_Mutation_p.P561S|MED16_uc010xfv.1_RNA|MED16_uc010xfw.1_Missense_Mutation_p.P492S|MED16_uc010xfx.1_Missense_Mutation_p.P417S|MED16_uc010xfy.1_Missense_Mutation_p.P149S|MED16_uc010xfz.1_5'Flank	NM_005481	NP_005472	Q9Y2X0	MED16_HUMAN	mediator complex subunit 16	572					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	receptor activity|thyroid hormone receptor binding|thyroid hormone receptor coactivator activity|vitamin D receptor binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTCTTGTCAGGCGTGTTGAGA	0.627000													95	79					0	0	1	0	0
ABCA7	10347	broad.mit.edu	37	19	1048932	1048932	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:1048932C>T	uc002lqw.3	+	17	2539	c.2308C>T	c.(2308-2310)CGG>TGG	p.R770W	ABCA7_uc010dsb.1_Missense_Mutation_p.R632W	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	770					phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTTTCCTTTTCGGAGGAGCTA	0.612000													21	17					0	0	1	0	0
SBNO2	22904	broad.mit.edu	37	19	1117449	1117449	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:1117449A>G	uc002lrk.3	-	15	1815	c.1577T>C	c.(1576-1578)CTG>CCG	p.L526P	SBNO2_uc002lrj.3_Missense_Mutation_p.L469P|SBNO2_uc010dse.2_Missense_Mutation_p.L509P|SBNO2_uc010xgj.1_Intron|SBNO2_uc010dsf.2_Missense_Mutation_p.L469P	NM_014963	NP_055778	Q9Y2G9	SBNO2_HUMAN	strawberry notch homolog 2 isoform 1	526					macrophage activation involved in immune response|negative regulation of transcription, DNA-dependent|regulation of inflammatory response|transcription, DNA-dependent						0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCGCGACTCCAGGCCGATCCA	0.657000													9	13					0	0	1	0	0
S1PR4	8698	broad.mit.edu	37	19	3179147	3179147	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:3179147C>T	uc002lxg.2	+	1	382	c.357C>T	c.(355-357)TTC>TTT	p.F119F		NM_003775	NP_003766	O95977	S1PR4_HUMAN	sphingosine-1-phosphate receptor 4 precursor	119	Helical; Name=3; (By similarity).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane	lipid binding|lysosphingolipid and lysophosphatidic acid receptor activity			lung(1)|skin(1)	2						CCCAGTGGTTCCTACGGGAGG	0.697000													49	104					0	0	1	0	0
CELF5	60680	broad.mit.edu	37	19	3281236	3281236	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:3281236G>A	uc002lxm.2	+	6	680	c.643G>A	c.(643-645)GAC>AAC	p.D215N	CELF5_uc002lxl.1_Missense_Mutation_p.D215N|CELF5_uc010dtj.1_Missense_Mutation_p.D215N|CELF5_uc010xhg.1_Missense_Mutation_p.D101N|CELF5_uc002lxn.2_RNA	NM_021938	NP_068757	Q8N6W0	CELF5_HUMAN	bruno-like 5, RNA binding protein	215					mRNA processing	cytoplasm|nucleus	nucleotide binding|RNA binding			ovary(2)	2						CGCCGACACGGACAAGGAGCG	0.677000													139	94					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9061767	9061767	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:9061767G>A	uc002mkp.2	-	3	25883	c.25679C>T	c.(25678-25680)TCT>TTT	p.S8560F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8562	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGAAGAGACAGAGCTGGCTTC	0.502000													23	16					0	0	1	0	0
ZNF846	162993	broad.mit.edu	37	19	9869040	9869040	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:9869040G>A	uc002mmb.1	-	6	1244	c.713C>T	c.(712-714)TCC>TTC	p.S238F	ZNF846_uc010xky.1_RNA|ZNF846_uc010xkz.1_RNA|ZNF846_uc010dww.2_Missense_Mutation_p.S109F|ZNF846_uc002mmc.1_Missense_Mutation_p.S109F	NM_001077624	NP_001071092	Q147U1	ZN846_HUMAN	zinc finger protein 846	238	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AAGGTGTGAGGAATTACTGAA	0.373000													42	85					0	0	1	0	0
RGL3	57139	broad.mit.edu	37	19	11510622	11510622	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:11510622G>A	uc002mrp.2	-	16	1719	c.1655C>T	c.(1654-1656)TCC>TTC	p.S552F	RGL3_uc002mrn.2_Missense_Mutation_p.S316F|RGL3_uc002mrm.2_Missense_Mutation_p.S316F|RGL3_uc002mro.2_Missense_Mutation_p.S558F	NM_001035223	NP_001030300	Q3MIN7	RGL3_HUMAN	ral guanine nucleotide dissociation	552	Pro-rich.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular				ovary(1)	1						TGACCCTGGGGACACACTGGG	0.637000													59	147					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13427930	13427930	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:13427930G>A	uc010dze.2	-	11	1790	c.1554C>T	c.(1552-1554)TTC>TTT	p.F518F	CACNA1A_uc010dzc.2_Silent_p.F43F|CACNA1A_uc002mwy.3_Silent_p.F517F|CACNA1A_uc010xne.1_Silent_p.F43F	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	518	II.|Extracellular (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	ACTCACAAAGGAAGTCGGAGA	0.502000													26	29					0	0	1	0	0
CC2D1A	54862	broad.mit.edu	37	19	14023144	14023144	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:14023144C>T	uc002mxo.2	+	3	504	c.205C>T	c.(205-207)CCG>TCG	p.P69S	CC2D1A_uc002mxn.2_Intron|CC2D1A_uc002mxp.2_Missense_Mutation_p.P69S|CC2D1A_uc010dzh.2_5'Flank	NM_017721	NP_060191	Q6P1N0	C2D1A_HUMAN	coiled-coil and C2 domain containing 1A	69					positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus|plasma membrane	DNA binding|signal transducer activity				0			OV - Ovarian serous cystadenocarcinoma(19;3.49e-23)			AGGTCCCTTGCCGATGGAGGC	0.607000													7	16					0	0	1	0	0
CCDC105	126402	broad.mit.edu	37	19	15124564	15124564	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:15124564G>A	uc002nae.2	+	2	750	c.651G>A	c.(649-651)ATG>ATA	p.M217I		NM_173482	NP_775753	Q8IYK2	CC105_HUMAN	coiled-coil domain containing 105	217	Potential.				microtubule cytoskeleton organization	microtubule				ovary(1)	1						AGAGAGATATGGAAAAATCAG	0.498000													24	19					0	0	1	0	0
OR10H4	126541	broad.mit.edu	37	19	16060671	16060671	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:16060671C>T	uc010xov.1	+	1	854	c.854C>T	c.(853-855)CCC>CTC	p.P285L		NM_001004465	NP_001004465	Q8NGA5	O10H4_HUMAN	olfactory receptor, family 10, subfamily H,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						GTCTTCACCCCCTTCCTTAGC	0.453000													53	193					0	0	1	0	0
UNC13A	23025	broad.mit.edu	37	19	17759783	17759783	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:17759783G>A	uc002nhd.2	-	15	1798	c.1798C>T	c.(1798-1800)CAG>TAG	p.Q600*		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	512					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						TTCCTGGACTGGACCAGGGAC	0.632000													15	13					0	0	1	0	0
RPL18A	6142	broad.mit.edu	37	19	17972140	17972140	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:17972140C>T	uc002nhp.1	+	2	92	c.57C>T	c.(55-57)ACC>ACT	p.T19T	SNORA68_uc002nhq.1_5'Flank	NM_000980	NP_000971	Q02543	RL18A_HUMAN	ribosomal protein L18a	19					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	protein binding|RNA binding|structural constituent of ribosome				0						GCCTGCCCACCCCCAAATGCC	0.557000													28	23					0	0	1	0	0
ZNF626	199777	broad.mit.edu	37	19	20808178	20808178	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:20808178C>A	uc002npb.1	-	4	655	c.505G>T	c.(505-507)GGG>TGG	p.G169W	ZNF626_uc002npc.1_Missense_Mutation_p.G93W	NM_001076675	NP_001070143	Q68DY1	ZN626_HUMAN	zinc finger protein 626 isoform 1	169					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						GGTTTTTTCCCAGTATGTCCT	0.338000													6	20					0.0293803	0.0294198	1	1	0
Unknown	0	broad.mit.edu	37	19	22780122	22780122	+	RNA	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:22780122C>T	uc002nqu.3	+	2		c.200C>T								Homo sapiens cDNA FLJ60031 complete cds, moderately similar to Golgin subfamily A member 2.																		CCCTGGTGTTCCTACAGGAGT	0.393000													74	39					0	0	1	0	0
ZNF527	84503	broad.mit.edu	37	19	37880055	37880055	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:37880055C>T	uc010efk.1	+	5	1215	c.1104C>T	c.(1102-1104)AGC>AGT	p.S368S	ZNF527_uc002ogf.3_Silent_p.S336S|ZNF527_uc010xtq.1_RNA	NM_032453	NP_115829	Q8NB42	ZN527_HUMAN	zinc finger protein 527	368	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AGGCCTTTAGCCGTTATGCCT	0.438000													27	70					0	0	1	0	0
CATSPERG	57828	broad.mit.edu	37	19	38858706	38858706	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:38858706G>A	uc002oih.3	+	26	3036	c.2949G>A	c.(2947-2949)TGG>TGA	p.W983*	CATSPERG_uc002oig.3_Nonsense_Mutation_p.W943*|CATSPERG_uc002oif.3_Nonsense_Mutation_p.W623*|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	983	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						GCCTTATCTGGACCACGAGGA	0.612000													101	279					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38934361	38934361	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:38934361C>G	uc002oit.2	+	5	479	c.349C>G	c.(349-351)CTG>GTG	p.L117V	RYR1_uc002oiu.2_Missense_Mutation_p.L117V	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	117	Cytoplasmic.|MIR 1.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	ACCCTAGTATCTGAGCTGCCT	0.642000													86	194					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38964173	38964173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:38964173C>T	uc002oit.2	+	28	4052	c.3922C>T	c.(3922-3924)CCG>TCG	p.P1308S	RYR1_uc002oiu.2_Missense_Mutation_p.P1308S	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1308	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	AGGGGCCACCCCGCTGGCACC	0.701000													17	9					0	0	1	0	0
FBXO27	126433	broad.mit.edu	37	19	39517561	39517561	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:39517561G>A	uc002okh.2	-	5	739	c.657C>T	c.(655-657)TTC>TTT	p.F219F		NM_178820	NP_849142	Q8NI29	FBX27_HUMAN	F-box protein 27	219	FBA.				protein catabolic process	SCF ubiquitin ligase complex	glycoprotein binding			ovary(1)	1	all_cancers(60;3.79e-07)|all_lung(34;1.26e-07)|Lung NSC(34;1.46e-07)|all_epithelial(25;4.69e-07)|Ovarian(47;0.0454)		Lung(45;0.000419)|LUSC - Lung squamous cell carcinoma(53;0.000554)			GCACAGCAGAGAATTTATCTA	0.542000													118	286					0	0	1	0	0
PLEKHG2	64857	broad.mit.edu	37	19	39915335	39915335	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:39915335G>A	uc010xuz.1	+	19	3887	c.3562G>A	c.(3562-3564)GAT>AAT	p.D1188N	PLEKHG2_uc010xuy.1_Missense_Mutation_p.D1129N|PLEKHG2_uc002olj.2_Intron|PLEKHG2_uc010xva.1_Missense_Mutation_p.D966N	NM_022835	NP_073746	Q9H7P9	PKHG2_HUMAN	common-site lymphoma/leukemia guanine nucleotide	1188					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			skin(2)|pancreas(1)|breast(1)	4	all_cancers(60;3.08e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;6.57e-07)|Ovarian(47;0.0569)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			AAGCCTTACAGATACACAGGT	0.567000													97	241					0	0	1	0	0
SHKBP1	92799	broad.mit.edu	37	19	41096275	41096275	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:41096275G>C	uc002oob.2	+	16	1764	c.1715G>C	c.(1714-1716)AGC>ACC	p.S572T	SHKBP1_uc002ooc.2_Missense_Mutation_p.S547T|SHKBP1_uc002ood.2_Intron|SHKBP1_uc010xvl.1_Missense_Mutation_p.S495T|SHKBP1_uc002ooe.2_Missense_Mutation_p.S409T|SHKBP1_uc002oof.2_Missense_Mutation_p.S409T|SHKBP1_uc010xvm.1_Missense_Mutation_p.S352T|SHKBP1_uc010xvn.1_Missense_Mutation_p.S450T|LTBP4_uc002oog.1_5'Flank	NM_138392	NP_612401	Q8TBC3	SHKB1_HUMAN	SH3KBP1 binding protein 1	572	WD 5.					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|pancreas(1)	2			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GCCAACGGCAGCTTGGCCATG	0.706000													3	55					0	0	1	0	0
CEACAM5	1048	broad.mit.edu	37	19	42231220	42231220	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:42231220G>T	uc002ork.2	+	9	2214	c.2093G>T	c.(2092-2094)GGG>GTG	p.G698V	CEACAM5_uc002orj.1_Missense_Mutation_p.G697V|CEACAM5_uc002orl.2_Missense_Mutation_p.G698V	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	698						anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		GTGCTGGTTGGGGTTGCTCTG	0.493000													173	384					9.66977e-116	9.92283e-116	1	1	0
CEACAM6	4680	broad.mit.edu	37	19	42265924	42265924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:42265924C>T	uc002orm.2	+	4	900	c.751C>T	c.(751-753)CCA>TCA	p.P251S		NM_002483	NP_002474	P40199	CEAM6_HUMAN	carcinoembryonic antigen-related cell adhesion	251	Ig-like C2-type 2.				cell-cell signaling|signal transduction	anchored to membrane|integral to plasma membrane				ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(3;0.00575)|all cancers(3;0.0352)|Epithelial(262;0.0797)		CAATTACCGTCCAGGGGAAAA	0.517000													91	55					0	0	1	0	0
MEGF8	1954	broad.mit.edu	37	19	42848673	42848673	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:42848673C>T	uc002otl.3	+	11	2504	c.1869C>T	c.(1867-1869)GCC>GCT	p.A623A	MEGF8_uc002otm.3_Silent_p.A164A	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				GCCCCACAGCCCCTCCACGGG	0.716000													10	23					0	0	1	0	0
PSG3	5671	broad.mit.edu	37	19	43243030	43243030	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:43243030C>T	uc002oue.2	-	2	408	c.276G>A	c.(274-276)GGG>GGA	p.G92G	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Silent_p.G114G	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	92	Ig-like V-type.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TGTATGCAGGCCCATATATAA	0.448000													151	494					0	0	1	0	0
PSG4	5672	broad.mit.edu	37	19	43699191	43699191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:43699191C>T	uc002ovy.2	-	4	1046	c.944G>A	c.(943-945)CGA>CAA	p.R315Q	PSG6_uc010xwk.1_Intron|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Missense_Mutation_p.R222Q|PSG4_uc002ovz.2_Intron	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	315	Ig-like C2-type 2.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				GCCACCATATCGGTCCCGTAT	0.488000													105	168					0	0	1	0	0
ZNF285	26974	broad.mit.edu	37	19	44891044	44891044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:44891044G>A	uc002ozd.3	-	4	1450	c.1363C>T	c.(1363-1365)CCA>TCA	p.P455S	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Missense_Mutation_p.P462S	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	455					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						CATTTGTATGGTTTCTCCCCT	0.443000													78	44					0	0	1	0	0
CLPTM1	1209	broad.mit.edu	37	19	45493754	45493754	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:45493754G>A	uc002pai.2	+	10	1249	c.1234G>A	c.(1234-1236)GAC>AAC	p.D412N	CLPTM1_uc010xxf.1_Missense_Mutation_p.D310N|CLPTM1_uc010xxg.1_Missense_Mutation_p.D398N	NM_001294	NP_001285	O96005	CLPT1_HUMAN	cleft lip and palate associated transmembrane	412	Extracellular (Potential).				cell differentiation|multicellular organismal development|regulation of T cell differentiation in thymus	external side of plasma membrane|integral to plasma membrane				ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00354)|Epithelial(262;0.187)		CTACATCCTGGACAACGAGAC	0.582000													82	154					0	0	1	0	0
EXOC3L2	90332	broad.mit.edu	37	19	45728119	45728119	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:45728119G>A	uc002pay.1	-	6	498	c.457C>T	c.(457-459)CGG>TGG	p.R153W		NM_138568	NP_612635	Q2M3D2	EX3L2_HUMAN	exocyst complex component 3-like 2	153										ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00883)		GATGCTTCCCGGGCCGGCTCG	0.657000													21	5					0	0	1	0	0
PPP1R13L	10848	broad.mit.edu	37	19	45885815	45885815	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:45885815C>T	uc002pbn.2	-	12	2495	c.2418G>A	c.(2416-2418)CAG>CAA	p.Q806Q	PPP1R13L_uc002pbm.2_Silent_p.Q385Q|PPP1R13L_uc002pbo.2_Silent_p.Q806Q	NM_006663	NP_006654	Q8WUF5	IASPP_HUMAN	protein phosphatase 1, regulatory subunit 13	806	SH3.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	transcription corepressor activity|transcription factor binding			skin(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0182)		CGTAGCCCTCCTGGCCGTGCA	0.697000													74	183					0	0	1	0	0
GPR4	2828	broad.mit.edu	37	19	46094564	46094564	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:46094564G>A	uc002pcm.2	-	2	1506	c.561C>T	c.(559-561)TTC>TTT	p.F187F	OPA3_uc010xxk.1_Intron	NM_005282	NP_005273	P46093	GPR4_HUMAN	G protein-coupled receptor 4	187	Helical; Name=5; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(262;0.0071)|GBM - Glioblastoma multiforme(486;0.128)|Epithelial(262;0.223)		GGAAGCCCACGAACACCCGAT	0.632000													49	95					0	0	1	0	0
TRPM4	54795	broad.mit.edu	37	19	49714445	49714445	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:49714445G>A	uc002pmw.2	+	24	3631	c.3559G>A	c.(3559-3561)GGG>AGG	p.G1187R	TRPM4_uc010emu.2_Missense_Mutation_p.G1042R|TRPM4_uc010yak.1_Missense_Mutation_p.G651R|TRPM4_uc002pmx.2_Missense_Mutation_p.G1013R|TRPM4_uc010emv.2_Missense_Mutation_p.G1072R|TRPM4_uc010yal.1_Missense_Mutation_p.G833R|TRPM4_uc002pmy.2_Missense_Mutation_p.G529R	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	1187	Cytoplasmic (Potential).|Potential.				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		CCGCGTCCTGGGGTGGGTGGC	0.687000													20	12					0	0	1	0	0
LRRC4B	94030	broad.mit.edu	37	19	51020887	51020887	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:51020887G>A	uc002pss.2	-	3	2220	c.2083C>T	c.(2083-2085)CAC>TAC	p.H695Y	ASPDH_uc002psr.3_5'Flank	NM_001080457	NP_001073926	Q9NT99	LRC4B_HUMAN	leucine rich repeat containing 4B precursor	695	Cytoplasmic (Potential).					cell junction|integral to membrane|presynaptic membrane				central_nervous_system(1)|skin(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00284)|GBM - Glioblastoma multiforme(134;0.0188)		AGAGGTTCGTGGATGGAGTTG	0.592000													20	58					0	0	1	0	0
SHANK1	50944	broad.mit.edu	37	19	51219675	51219675	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:51219675C>T	uc002psx.1	-	2	335	c.316G>A	c.(316-318)GCC>ACC	p.A106T		NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	106					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		TCGCTCAGGGCACAGAGCACC	0.637000													30	95					0	0	1	0	0
SIGLECP3	284367	broad.mit.edu	37	19	51671056	51671056	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:51671056G>A	uc010ycv.1	+	2	410	c.400G>A	c.(400-402)GAC>AAC	p.D134N	SIGLECP3_uc010ycu.1_Missense_Mutation_p.D134N|SIGLECP3_uc002pvy.3_Missense_Mutation_p.D134N|SIGLECP3_uc002pvz.3_Missense_Mutation_p.D134N					SubName: Full=cDNA FLJ56974, moderately similar to Myeloid cell surface antigen CD33;												0						CAGGAGGAGGGACAACGGTTC	0.517000													18	22					0	0	1	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51919298	51919298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:51919298C>T	uc002pwo.2	-	5	1494	c.878G>A	c.(877-879)AGA>AAA	p.R293K	SIGLEC10_uc002pwp.2_Missense_Mutation_p.R235K|SIGLEC10_uc002pwq.2_Missense_Mutation_p.R235K|SIGLEC10_uc002pwr.2_Missense_Mutation_p.R293K|SIGLEC10_uc010ycy.1_Intron|SIGLEC10_uc010ycz.1_Missense_Mutation_p.R245K|SIGLEC10_uc010eow.2_Missense_Mutation_p.R105K|SIGLEC10_uc002pws.1_Intron	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	293	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		GGAGAGGACTCTGTTCTGCAG	0.652000													18	21					0	0	1	0	0
BIRC8	112401	broad.mit.edu	37	19	53793621	53793621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:53793621C>T	uc002qbk.2	-	1	1255	c.7G>A	c.(7-9)GGT>AGT	p.G3S		NM_033341	NP_203127	Q96P09	BIRC8_HUMAN	baculoviral IAP repeat-containing 8	3					apoptosis		zinc ion binding			lung(1)	1				GBM - Glioblastoma multiforme(134;0.00304)		GCTTCATAACCCGTCATGGAT	0.423000													39	30					0	0	1	0	0
LILRB1	10859	broad.mit.edu	37	19	55143953	55143953	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:55143953C>T	uc002qgj.2	+	7	1040	c.700C>T	c.(700-702)CCT>TCT	p.P234S	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Missense_Mutation_p.P234S|LILRB1_uc002qgk.2_Missense_Mutation_p.P234S|LILRB1_uc002qgm.2_Missense_Mutation_p.P234S|LILRB1_uc010erq.2_Missense_Mutation_p.P234S|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	234	Ig-like C2-type 3.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		GCAGCCAGGTCCTATCGTGGC	0.537000										HNSCC(37;0.09)			82	76					0	0	1	0	0
PTPRH	5794	broad.mit.edu	37	19	55716775	55716775	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:55716775G>C	uc002qjq.2	-	4	611	c.538C>G	c.(538-540)CCC>GCC	p.P180A	PTPRH_uc010esv.2_Intron|PTPRH_uc002qjs.2_Missense_Mutation_p.P187A	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	180	Fibronectin type-III 2.|Extracellular (Potential).				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		AAACACCCGGGTTCAAGTCCA	0.547000													174	116					0	0	1	0	0
ZIM3	114026	broad.mit.edu	37	19	57646628	57646628	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:57646628C>T	uc002qnz.1	-	5	1463	c.1077G>A	c.(1075-1077)GGG>GGA	p.G359G		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	359					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		AAGCTCTCTTCCCAGTGTGAA	0.383000													112	99					0	0	1	0	0
KLF11	8462	broad.mit.edu	37	2	10187786	10187786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:10187786C>T	uc002raf.1	+	3	484	c.322C>T	c.(322-324)CCT>TCT	p.P108S	KLF11_uc010yjc.1_Missense_Mutation_p.P91S	NM_003597	NP_003588	O14901	KLF11_HUMAN	Kruppel-like factor 11	108					apoptosis|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|regulation of transcription involved in S phase of mitotic cell cycle	nucleus	sequence-specific DNA binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.133)|OV - Ovarian serous cystadenocarcinoma(76;0.228)		GTGCATAACTCCTCCTCAGAG	0.413000													34	43					0	0	1	0	0
NBAS	51594	broad.mit.edu	37	2	15694243	15694243	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:15694243G>A	uc002rcc.1	-	4	255	c.229C>T	c.(229-231)CCT>TCT	p.P77S	NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	77										ovary(2)|liver(1)|skin(1)	4						AGTCCATCAGGGAGCAAAAAA	0.368000													14	16					0	0	1	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17699610	17699610	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:17699610C>T	uc002rcl.1	-	1	97	c.73G>A	c.(73-75)GAC>AAC	p.D25N	RAD51AP2_uc010exn.1_Missense_Mutation_p.D16N	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	25										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					GAATCCGGGTCCTCAGGAGGC	0.602000													57	93					0	0	1	0	0
EMILIN1	11117	broad.mit.edu	37	2	27305120	27305120	+	Silent	SNP	G	C	C	rs150542277	byFrequency	TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:27305120G>C	uc002rii.3	+	4	1109	c.681G>C	c.(679-681)GCG>GCC	p.A227A	EMILIN1_uc010eyq.1_Silent_p.A227A|EMILIN1_uc002rik.3_5'Flank	NM_007046	NP_008977	Q9Y6C2	EMIL1_HUMAN	elastin microfibril interfacer 1 precursor	227	Potential.				cell adhesion	collagen				pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CAGCTGACGCGGCTGCCCGCC	0.682000													20	37					0	0	1	0	0
GTF3C2	2976	broad.mit.edu	37	2	27558560	27558560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:27558560G>A	uc002rjv.1	-	11	1844	c.1481C>T	c.(1480-1482)CCC>CTC	p.P494L	GTF3C2_uc010eyy.1_5'Flank|GTF3C2_uc002rju.1_Missense_Mutation_p.P505L|GTF3C2_uc002rjw.1_Missense_Mutation_p.P494L|GTF3C2_uc010eyz.1_Missense_Mutation_p.P494L|uc002rjy.1_RNA	NM_001521	NP_001512	Q8WUA4	TF3C2_HUMAN	general transcription factor IIIC, polypeptide	494	WD 1.					transcription factor TFIIIC complex				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACCCAACCGGGGCAGGAGAGG	0.552000													3	4					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31565048	31565048	+	Splice_Site	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:31565048C>T	uc002rnv.1	-	32	3598	c.3519_splice	c.e32+1	p.K1173_splice		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase						purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	AAACTTCTTACCTTATGATCT	0.418000													42	46					0	0	1	0	0
EIF2AK2	5610	broad.mit.edu	37	2	37362678	37362678	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:37362678G>A	uc010ynh.1	-	10	1291	c.734C>T	c.(733-735)CCC>CTC	p.P245L	EIF2AK2_uc010fab.1_Missense_Mutation_p.P245L|EIF2AK2_uc010yng.1_Missense_Mutation_p.P245L|EIF2AK2_uc010fac.2_Missense_Mutation_p.P245L|EIF2AK2_uc010fad.2_Missense_Mutation_p.P245L	NM_002759	NP_002750	P19525	E2AK2_HUMAN	eukaryotic translation initiation factor 2-alpha	245				Missing: Loss of activity.	evasion by virus of host immune response|modulation by virus of host cellular process|negative regulation of osteoblast proliferation|protein autophosphorylation|response to virus|viral infectious cycle	cytosol	ATP binding|double-stranded RNA binding|eukaryotic translation initiation factor 2alpha kinase activity|protein binding|protein phosphatase type 2A regulator activity			ovary(2)|lung(2)|pancreas(1)	5		all_hematologic(82;0.248)				GTCAAATCTGGGTGCCAAAGA	0.249000													66	69					0	0	1	0	0
SLC8A1	6546	broad.mit.edu	37	2	40657369	40657369	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:40657369G>A	uc002rrx.2	-	1	76	c.52C>T	c.(52-54)CAT>TAT	p.H18Y	SLC8A1_uc002rry.2_Missense_Mutation_p.H18Y|SLC8A1_uc002rrz.2_Missense_Mutation_p.H18Y|SLC8A1_uc002rsa.2_Missense_Mutation_p.H18Y|SLC8A1_uc002rsd.3_Missense_Mutation_p.H18Y|SLC8A1_uc002rsb.1_Missense_Mutation_p.H18Y|SLC8A1_uc010fan.1_Missense_Mutation_p.H18Y|SLC8A1_uc002rsc.1_Missense_Mutation_p.H18Y	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	18					cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	ACTAACAGATGAAATCCCATT	0.418000													19	40					0	0	1	0	0
EML4	27436	broad.mit.edu	37	2	42557083	42557083	+	Silent	SNP	A	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:42557083A>G	uc002rsi.2	+	23	2944	c.2682A>G	c.(2680-2682)CAA>CAG	p.Q894Q	EML4_uc010fap.2_Silent_p.Q836Q|EML4_uc002rsj.2_Silent_p.Q583Q|EML4_uc010faq.2_Silent_p.Q239Q|EML4_uc010ynv.1_Silent_p.Q158Q	NM_019063	NP_061936	Q9HC35	EMAL4_HUMAN	echinoderm microtubule associated protein like 4	894					microtubule-based process|mitosis	cytoplasm|microtubule	protein binding		EML4/ALK(246)	lung(246)|ovary(2)|central_nervous_system(1)|skin(1)	250						GTGTCATCCAATCTAATACTC	0.468000			T	ALK	NSCLC								57	63					0	0	1	0	0
NRXN1	9378	broad.mit.edu	37	2	51254887	51254887	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:51254887C>T	uc010fbq.2	-	2	2002	c.525G>A	c.(523-525)AGG>AGA	p.R175R	NRXN1_uc002rxe.3_Silent_p.R175R|NRXN1_uc002rxd.1_Silent_p.R175R	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			GCTCCCGCTCCCTCACCGAGG	0.687000													6	12					0	0	1	0	0
NRXN1	9378	broad.mit.edu	37	2	51255021	51255021	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:51255021C>T	uc010fbq.2	-	2	1868	c.391G>A	c.(391-393)GAC>AAC	p.D131N	NRXN1_uc002rxe.3_Missense_Mutation_p.D131N|NRXN1_uc002rxd.1_Missense_Mutation_p.D131N	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	194	Extracellular (Potential).|Laminin G-like.				angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			TCCACCTGGTCGATGAAGAGC	0.682000													36	44					0	0	1	0	0
USP34	9736	broad.mit.edu	37	2	61571002	61571002	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:61571002G>A	uc002sbe.2	-	16	2470	c.2448C>T	c.(2446-2448)CTC>CTT	p.L816L		NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	816					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			GATGTTGTTGGAGGTGAGATG	0.363000													41	51					0	0	1	0	0
SLC1A4	6509	broad.mit.edu	37	2	65245733	65245733	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:65245733C>T	uc010yqa.1	+	7	1606	c.1284C>T	c.(1282-1284)GTC>GTT	p.V428V	SLC1A4_uc010ypy.1_Silent_p.V208V|SLC1A4_uc010ypz.1_Silent_p.V130V|SLC1A4_uc010fcv.2_Silent_p.V428V|SLC1A4_uc002sdh.2_Silent_p.V208V	NM_003038	NP_003029	P43007	SATT_HUMAN	solute carrier family 1, member 4 isoform 1	428	Helical; (Potential).				cellular nitrogen compound metabolic process|cognition|synaptic transmission, glutamatergic	intermediate filament|melanosome	chloride channel activity|L-alanine transmembrane transporter activity|L-cystine transmembrane transporter activity|L-hydroxyproline transmembrane transporter activity|L-proline transmembrane transporter activity|L-serine transmembrane transporter activity|L-threonine transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(1)	1					L-Alanine(DB00160)	CTGGAGGGGTCCTCACCATTG	0.567000													55	65					0	0	1	0	0
ARHGAP25	9938	broad.mit.edu	37	2	69049857	69049857	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:69049857G>A	uc002seu.2	+	10	1947	c.1583G>A	c.(1582-1584)GGA>GAA	p.G528E	ARHGAP25_uc010fdg.2_Missense_Mutation_p.G529E|ARHGAP25_uc010yql.1_Missense_Mutation_p.G489E|ARHGAP25_uc002sew.2_Missense_Mutation_p.G521E|ARHGAP25_uc002sex.2_Missense_Mutation_p.G522E|ARHGAP25_uc002sey.2_Missense_Mutation_p.G255E	NM_001007231	NP_001007232	P42331	RHG25_HUMAN	Rho GTPase activating protein 25 isoform a	528					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|breast(2)	4						GACTCCAAGGGAGATACTCTT	0.532000													83	88					0	0	1	0	0
TIA1	7072	broad.mit.edu	37	2	70457969	70457969	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:70457969G>A	uc002sgj.3	-	3	358	c.141C>T	c.(139-141)CCC>CCT	p.P47P	TIA1_uc002sgk.3_Silent_p.P47P|TIA1_uc002sgl.3_RNA|TIA1_uc002sgm.3_Silent_p.P47P|TIA1_uc010yqt.1_Silent_p.P47P	NM_022173	NP_071505	P31483	TIA1_HUMAN	TIA1 cytotoxic granule-associated RNA binding	47	RRM 1.				apoptosis|induction of apoptosis|regulation of nuclear mRNA splicing, via spliceosome	nucleus	nucleotide binding|poly(A) RNA binding|protein binding				0						CAAAACAATAGGGATCATTTC	0.363000													49	62					0	0	1	0	0
VWA3B	200403	broad.mit.edu	37	2	98846550	98846550	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:98846550G>A	uc002syo.2	+	16	2452	c.2188G>A	c.(2188-2190)GAA>AAA	p.E730K	VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Missense_Mutation_p.E249K|VWA3B_uc002sym.2_Missense_Mutation_p.E730K|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.E387K|VWA3B_uc002syp.1_Missense_Mutation_p.E122K|VWA3B_uc002syq.1_Missense_Mutation_p.E6K|VWA3B_uc002syr.1_Missense_Mutation_p.E47K	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	730										ovary(3)|large_intestine(2)|skin(1)	6						TTCAACCCCAGAAAAGTGTGC	0.368000													21	32					0	0	1	0	0
AFF3	3899	broad.mit.edu	37	2	100623791	100623791	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:100623791C>A	uc002tag.2	-	5	542	c.306G>T	c.(304-306)CAG>CAT	p.Q102H	AFF3_uc002taf.2_Missense_Mutation_p.Q127H|AFF3_uc010fiq.1_Missense_Mutation_p.Q102H|AFF3_uc010yvr.1_Missense_Mutation_p.Q256H|AFF3_uc002tah.1_Missense_Mutation_p.Q127H|AFF3_uc010fir.1_Missense_Mutation_p.Q179H|AFF3_uc002tai.2_Missense_Mutation_p.Q24H	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	102					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						TCACAGGAGTCTGAGGAACCC	0.443000													35	33					4.32679e-17	4.37376e-17	1	1	0
RGPD3	653489	broad.mit.edu	37	2	107040302	107040302	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:107040302C>T	uc010ywi.1	-	20	4178	c.4121G>A	c.(4120-4122)TGG>TAG	p.W1374*		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1374	RanBD1 2.				intracellular transport		binding			ovary(1)	1						CCTTTCTTTCCATTGACCAAC	0.358000													73	131					0	0	1	0	0
RGPD4	285190	broad.mit.edu	37	2	108488418	108488418	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:108488418G>A	uc010ywk.1	+	20	4040	c.3958G>A	c.(3958-3960)GAA>AAA	p.E1320K	RGPD4_uc002tdu.2_Missense_Mutation_p.E507K|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1320					intracellular transport		binding			skin(2)	2						TGGCACTGATGAAGAATCTGA	0.408000													54	75					0	0	1	0	0
RGPD4	285190	broad.mit.edu	37	2	108488568	108488568	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:108488568G>A	uc010ywk.1	+	20	4190	c.4108G>A	c.(4108-4110)GAT>AAT	p.D1370N	RGPD4_uc002tdu.2_Missense_Mutation_p.D557N|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1370	RanBD1 2.				intracellular transport		binding			skin(2)	2						ATATGATAAAGATGTTGGTCA	0.358000													63	91					0	0	1	0	0
IL1F5	26525	broad.mit.edu	37	2	113819745	113819745	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:113819745C>T	uc002tis.2	+	4	293	c.160C>T	c.(160-162)CTG>TTG	p.L54L	IL1F5_uc002tit.2_Silent_p.L54L	NM_173170	NP_775262	Q9UBH0	I36RA_HUMAN	interleukin 1 family, member 5	54						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						GGATGCCAGCCTGTCCCCCGT	0.617000													56	76					0	0	1	0	0
MYO7B	4648	broad.mit.edu	37	2	128351213	128351213	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:128351213C>T	uc002top.2	+	18	2291	c.2238C>T	c.(2236-2238)TTC>TTT	p.F746F		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	746	IQ 1.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		CAAAAATTTTCCTGAGGGTGA	0.607000													57	75					0	0	1	0	0
FAM123C	205147	broad.mit.edu	37	2	131521956	131521956	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:131521956G>A	uc002trw.2	+	2	2501	c.2311G>A	c.(2311-2313)GAG>AAG	p.E771K	FAM123C_uc010fmv.2_Missense_Mutation_p.E771K|FAM123C_uc010fms.1_Missense_Mutation_p.E771K|FAM123C_uc010fmt.1_Missense_Mutation_p.E771K|FAM123C_uc010fmu.1_Missense_Mutation_p.E771K	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	771										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		GGCCTCTGTGGAGGACCAGCC	0.677000													15	19					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136570375	136570375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:136570375G>A	uc002tuu.1	-	7	1870	c.1859C>T	c.(1858-1860)TCT>TTT	p.S620F		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	620	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GAAGCGCTCAGAGGCTCTCAG	0.592000													45	58					0	0	1	0	0
CYTIP	9595	broad.mit.edu	37	2	158272265	158272265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:158272265C>T	uc002tzj.1	-	8	1076	c.1004G>A	c.(1003-1005)GGA>GAA	p.G335E	CYTIP_uc010zcl.1_Missense_Mutation_p.G229E	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	335					regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						TCGGACACTTCCCTTTCTGCT	0.502000													44	47					0	0	1	0	0
TBR1	10716	broad.mit.edu	37	2	162273385	162273385	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:162273385G>A	uc002ubw.1	+	1	766	c.464G>A	c.(463-465)GGA>GAA	p.G155E	TBR1_uc010foy.2_5'Flank	NM_006593	NP_006584	Q16650	TBR1_HUMAN	T-box, brain, 1	155						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						ATCACCAACGGAGCCTACAAC	0.677000													81	82					0	0	1	0	0
GCA	25801	broad.mit.edu	37	2	163216050	163216050	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:163216050C>T	uc002ucg.2	+	7	791	c.615C>T	c.(613-615)TTC>TTT	p.F205F	GCA_uc010zcu.1_Silent_p.F186F	NM_012198	NP_036330	P28676	GRAN_HUMAN	grancalcin, EF-hand calcium binding protein	205					cellular membrane fusion	cytoplasm|plasma membrane	calcium ion binding|protein homodimerization activity				0						CTGCGAATTTCATATATGACG	0.294000													13	8					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168097225	168097225	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:168097225C>T	uc002udx.2	+	6	1039	c.1021C>T	c.(1021-1023)CAT>TAT	p.H341Y	XIRP2_uc010fpn.2_Missense_Mutation_p.H374Y|XIRP2_uc010fpo.2_Missense_Mutation_p.H341Y|XIRP2_uc010fpp.2_Missense_Mutation_p.H341Y|XIRP2_uc002udy.2_Missense_Mutation_p.H166Y|XIRP2_uc010fpq.2_Missense_Mutation_p.H119Y|XIRP2_uc010fpr.2_Missense_Mutation_p.H119Y	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	166					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ATCTCAGTTTCATCAATATGT	0.333000													42	40					0	0	1	0	0
MAP1D	254042	broad.mit.edu	37	2	172930373	172930373	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:172930373G>A	uc002uhk.2	+	4	463	c.390G>A	c.(388-390)CGG>CGA	p.R130R	MAP1D_uc010zdw.1_Silent_p.R12R	NM_199227	NP_954697	Q6UB28	AMP1D_HUMAN	methionine aminopeptidase 1D precursor	130					N-terminal protein amino acid modification|peptidyl-methionine modification|proteolysis	mitochondrion	aminopeptidase activity|metal ion binding|metalloexopeptidase activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.216)			TTGTTCATCGGGAAATCATCA	0.373000													37	69					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179604798	179604798	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:179604798G>A	uc010zfh.1	-	46	12873	c.12649C>T	c.(12649-12651)CCA>TCA	p.P4217S	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.P4150S|TTN_uc010zfj.1_Missense_Mutation_p.P4025S|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGCTCTTCTGGAATACCAGAA	0.473000													14	26					0	0	1	0	0
NEUROD1	4760	broad.mit.edu	37	2	182543039	182543039	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:182543039C>T	uc002uof.2	-	2	785	c.549G>A	c.(547-549)CTG>CTA	p.L183L	CERKL_uc002uod.1_Intron	NM_002500	NP_002491	Q13562	NDF1_HUMAN	neurogenic differentiation 1	183					amacrine cell differentiation|cerebellum development|dentate gyrus development|embryonic organ morphogenesis|enteroendocrine cell differentiation|glucose homeostasis|inner ear development|insulin secretion|negative regulation of apoptosis|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of intestinal epithelial structure maintenance|response to glucose stimulus	cytoplasm|nucleus	chromatin binding|E-box binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.088)			AGCCCGCAACCAGGTTGGTGG	0.607000													44	64					0	0	1	0	0
FAM171B	165215	broad.mit.edu	37	2	187627450	187627450	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:187627450C>T	uc002ups.2	+	8	2493	c.2381C>T	c.(2380-2382)TCC>TTC	p.S794F	FAM171B_uc002upr.1_Missense_Mutation_p.S761F|FAM171B_uc002upt.2_Missense_Mutation_p.S263F	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	794	Cytoplasmic (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						GCTAATACATCCCCCACTAAA	0.478000													8	15					0	0	1	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187703837	187703837	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:187703837G>A	uc002upu.1	-	4	383	c.343C>T	c.(343-345)CGA>TGA	p.R115*		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	115					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			GTTTGAACTCGATGTATCCCC	0.393000													50	76					0	0	1	0	0
MSTN	2660	broad.mit.edu	37	2	190922136	190922136	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:190922136G>A	uc002urp.2	-	3	1109	c.976C>T	c.(976-978)CTG>TTG	p.L326L		NM_005259	NP_005250	O14793	GDF8_HUMAN	myostatin precursor	326					muscle organ development|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000742)|Epithelial(96;0.0121)|all cancers(119;0.0395)			TGGTGTACCAGATGAGTATGA	0.383000													27	55					0	0	1	0	0
STAT1	6772	broad.mit.edu	37	2	191841735	191841735	+	Silent	SNP	C	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:191841735C>A	uc002usj.2	-	22	2278	c.1890G>T	c.(1888-1890)GCG>GCT	p.A630A	STAT1_uc010fse.1_Silent_p.A630A|STAT1_uc002usk.2_Silent_p.A630A|STAT1_uc002usl.2_Silent_p.A632A	NM_007315	NP_009330	P42224	STAT1_HUMAN	signal transducer and activator of transcription	630	SH2.				activation of caspase activity|I-kappaB kinase/NF-kappaB cascade|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway|tyrosine phosphorylation of STAT protein	cytosol|nucleolus|nucleoplasm	calcium ion binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding|RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity|signal transducer activity			lung(3)|breast(3)|central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.00434)|Epithelial(96;0.0555)|all cancers(119;0.141)		Fludarabine(DB01073)	AGGGTTCAACCGCATGGAAGT	0.408000													3	68					1	1	1	1	0
STAT1	6772	broad.mit.edu	37	2	191843720	191843720	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:191843720T>G	uc002usj.2	-	21	2123	c.1735A>C	c.(1735-1737)ATG>CTG	p.M579L	STAT1_uc010fse.1_Missense_Mutation_p.M579L|STAT1_uc002usk.2_Missense_Mutation_p.M579L|STAT1_uc002usl.2_Missense_Mutation_p.M581L	NM_007315	NP_009330	P42224	STAT1_HUMAN	signal transducer and activator of transcription	579	SH2.				activation of caspase activity|I-kappaB kinase/NF-kappaB cascade|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway|tyrosine phosphorylation of STAT protein	cytosol|nucleolus|nucleoplasm	calcium ion binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding|RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity|signal transducer activity			lung(3)|breast(3)|central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.00434)|Epithelial(96;0.0555)|all cancers(119;0.141)		Fludarabine(DB01073)	ATGAAGCCCATGATGCACCTG	0.517000													20	20					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196762408	196762408	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:196762408C>T	uc002utj.3	-	29	4731	c.4630G>A	c.(4630-4632)GAT>AAT	p.D1544N		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1544					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AGTGGTAAATCATGGGATAAA	0.289000													25	30					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196765044	196765044	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:196765044C>T	uc002utj.3	-	28	4611	c.4510G>A	c.(4510-4512)GCC>ACC	p.A1504T		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1504	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GACTTCACGGCTCTCATTCCA	0.423000													72	101					0	0	1	0	0
DYTN	391475	broad.mit.edu	37	2	207557952	207557952	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:207557952C>T	uc002vbr.1	-	9	1044	c.927G>A	c.(925-927)CAG>CAA	p.Q309Q		NM_001093730	NP_001087199	A2CJ06	DYTN_HUMAN	dystrotelin	309						plasma membrane	zinc ion binding			ovary(1)|central_nervous_system(1)	2				LUSC - Lung squamous cell carcinoma(261;0.082)|Epithelial(149;0.129)|Lung(261;0.153)		CCAGCAGCTGCTGCCTTCTCG	0.552000													13	19					0	0	1	0	0
MREG	55686	broad.mit.edu	37	2	216809589	216809589	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:216809589G>A	uc002vfo.2	-	5	938	c.642C>T	c.(640-642)CCC>CCT	p.P214P	MREG_uc002vfq.2_RNA	NM_018000	NP_060470	Q8N565	MREG_HUMAN	whn-dependent transcript 2	214						apical plasma membrane					0		Renal(323;0.0328)		Epithelial(149;4.64e-07)|all cancers(144;5.56e-05)|LUSC - Lung squamous cell carcinoma(224;0.00832)|Lung(261;0.0111)		CTCTCCTTTAGGGACTTGGAA	0.488000													18	33					0	0	1	0	0
RUFY4	285180	broad.mit.edu	37	2	218954061	218954061	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:218954061G>A	uc002vgw.2	+	13	2914	c.1070G>A	c.(1069-1071)CGA>CAA	p.R357Q	RUFY4_uc002vgy.1_RNA|RUFY4_uc010fvl.1_Missense_Mutation_p.R357Q	NM_198483	NP_940885	Q6ZNE9	RUFY4_HUMAN	RUN and FYVE domain containing 4	530	FYVE-type.						metal ion binding			pancreas(1)	1		Renal(207;0.0915)		Epithelial(149;4.11e-06)|all cancers(144;0.000519)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		ATCTTTGGCCGATTTTCTCGG	0.602000													22	23					0	0	1	0	0
PRKAG3	53632	broad.mit.edu	37	2	219694842	219694842	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:219694842C>T	uc002vjb.1	-	4	511	c.492G>A	c.(490-492)CAG>CAA	p.Q164Q	PRKAG3_uc010zkn.1_RNA|PRKAG3_uc010fvy.1_Silent_p.Q164Q|PRKAG3_uc010zko.1_Silent_p.Q160Q	NM_017431	NP_059127	Q9UGI9	AAKG3_HUMAN	AMP-activated protein kinase, non-catalytic	164					cell cycle arrest|fatty acid biosynthetic process|insulin receptor signaling pathway|intracellular protein kinase cascade|regulation of fatty acid oxidation	cytosol	AMP-activated protein kinase activity|protein kinase binding			ovary(1)|lung(1)	2		Renal(207;0.0474)		Epithelial(149;4.35e-07)|all cancers(144;8.96e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GAAATGGGGCCTGCGGGGACA	0.627000													45	60					0	0	1	0	0
DES	1674	broad.mit.edu	37	2	220290683	220290683	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:220290683G>A	uc002vll.2	+	9	1470	c.1384G>A	c.(1384-1386)GCC>ACC	p.A462T		NM_001927	NP_001918	P17661	DESM_HUMAN	desmin	462	Tail.				cytoskeleton organization|muscle filament sliding|regulation of heart contraction	cytosol|Z disc	protein binding|structural constituent of cytoskeleton			central_nervous_system(2)	2		Renal(207;0.0183)		Epithelial(149;5.25e-07)|all cancers(144;0.000103)|Lung(261;0.00533)|LUSC - Lung squamous cell carcinoma(224;0.008)		CGTCAGTGAGGCCACACAGCA	0.612000													75	79					0	0	1	0	0
SP140	11262	broad.mit.edu	37	2	231113608	231113608	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:231113608G>A	uc002vql.2	+	9	1016	c.901G>A	c.(901-903)GAT>AAT	p.D301N	SP140_uc010zma.1_RNA|SP140_uc002vqk.2_Missense_Mutation_p.D301N|SP140_uc002vqn.2_Missense_Mutation_p.D248N|SP140_uc002vqm.2_Missense_Mutation_p.D275N|SP140_uc010fxl.2_Missense_Mutation_p.D301N	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	301					defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		AGAGACCTTTGATCTAAAAAC	0.433000													22	27					0	0	1	0	0
EFHD1	80303	broad.mit.edu	37	2	233527636	233527636	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:233527636G>A	uc002vtc.2	+	2	635	c.427G>A	c.(427-429)GAT>AAT	p.D143N	EFHD1_uc010fyf.2_Missense_Mutation_p.D47N|EFHD1_uc002vtd.2_Missense_Mutation_p.D31N	NM_025202	NP_079478	Q9BUP0	EFHD1_HUMAN	EF-hand domain family, member D1	143	EF-hand 2.|2 (Potential).						calcium ion binding|protein binding				0		all_hematologic(139;0.0123)|Acute lymphoblastic leukemia(138;0.0182)|Breast(86;0.0199)|Renal(207;0.025)		Epithelial(121;2.08e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000383)|LUSC - Lung squamous cell carcinoma(224;0.00825)|Lung(119;0.0101)		TGAGGACTTCGATGGCAAGCT	0.622000													22	31					0	0	1	0	0
UGT1A4	54657	broad.mit.edu	37	2	234628299	234628299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:234628299G>A	uc002vux.2	+	1	862	c.833G>A	c.(832-834)GGC>GAC	p.G278D	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Missense_Mutation_p.G278D	NM_007120	NP_009051	P22310	UD14_HUMAN	UDP glycosyltransferase 1 family, polypeptide A4	278					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;3.49e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000504)|Lung(119;0.0026)|LUSC - Lung squamous cell carcinoma(224;0.00624)	Imipramine(DB00458)|Lamotrigine(DB00555)|Paricalcitol(DB00910)|Trifluoperazine(DB00831)	TTCATTGGGGGCATCAACTGT	0.483000													129	228					0	0	1	0	0
IQCA1	79781	broad.mit.edu	37	2	237240134	237240134	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:237240134G>A	uc002vvz.1	-	18	2423	c.2241C>T	c.(2239-2241)GTC>GTT	p.V747V	IQCA1_uc002vwb.2_Silent_p.V755V|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Silent_p.V706V	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	747							ATP binding			ovary(1)	1						TAACCACTTCGACTATATGTC	0.493000													51	71					0	0	1	0	0
IQCA1	79781	broad.mit.edu	37	2	237395476	237395476	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:237395476C>T	uc002vvz.1	-	5	898	c.716G>A	c.(715-717)GGT>GAT	p.G239D	IQCA1_uc002vwb.2_Missense_Mutation_p.G246D|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Missense_Mutation_p.G239D	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	239							ATP binding			ovary(1)	1						ACTTACCATACCCAGGAAGAT	0.348000													3	9					0	0	1	0	0
RBM44	375316	broad.mit.edu	37	2	238726609	238726609	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr2:238726609C>T	uc002vxi.3	+	3	1182	c.1050C>T	c.(1048-1050)AAC>AAT	p.N350N		NM_001080504	NP_001073973	Q6ZP01	RBM44_HUMAN	RNA binding motif protein 44	349							nucleotide binding|RNA binding			ovary(4)	4		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;3.74e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.3e-11)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000118)|Lung(119;0.0112)|LUSC - Lung squamous cell carcinoma(224;0.0266)		TTGTTGAGAACAAAATATTAC	0.313000													14	12					0	0	1	0	0
SRXN1	140809	broad.mit.edu	37	20	629487	629487	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr20:629487G>A	uc002wea.2	-	2	346	c.285C>T	c.(283-285)TCC>TCT	p.S95S	SRXN1_uc002web.2_RNA	NM_080725	NP_542763	Q9BYN0	SRXN1_HUMAN	sulfiredoxin 1 homolog	95					response to oxidative stress	cytosol	antioxidant activity|ATP binding|DNA binding|sulfiredoxin activity			ovary(1)	1						AGCCCCCAAAGGAGTAGAAGT	0.607000													33	71					0	0	1	0	0
TGM3	7053	broad.mit.edu	37	20	2312850	2312850	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr20:2312850G>A	uc002wfx.3	+	10	1633	c.1536G>A	c.(1534-1536)ACG>ACA	p.T512T		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	512					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	GCAGGGATACGAAGACAGTGA	0.537000													42	24					0	0	1	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3679989	3679989	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr20:3679989C>T	uc002wja.2	-	7	1646	c.1646G>A	c.(1645-1647)GGA>GAA	p.G549E	SIGLEC1_uc002wiz.3_Missense_Mutation_p.G549E	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	549	Ig-like C2-type 5.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						AAGCAGGGCTCCATTCAGGTA	0.682000													10	17					0	0	1	0	0
MAVS	57506	broad.mit.edu	37	20	3843000	3843000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr20:3843000C>T	uc002wjw.3	+	5	734	c.565C>T	c.(565-567)CCT>TCT	p.P189S	MAVS_uc010zqn.1_3'UTR|MAVS_uc002wjx.3_Missense_Mutation_p.P48S|MAVS_uc002wjy.3_5'UTR	NM_020746	NP_065797	Q7Z434	MAVS_HUMAN	virus-induced signaling adapter	189	Cytoplasmic (Probable).				activation of innate immune response|cellular response to exogenous dsRNA|defense response to bacterium|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of chemokine (C-C motif) ligand 5 production|positive regulation of defense response to virus by host|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interleukin-8 production|positive regulation of IP-10 production|positive regulation of protein import into nucleus, translocation|positive regulation of protein phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription factor import into nucleus|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|positive regulation of type I interferon-mediated signaling pathway|response to virus	integral to membrane|mitochondrial outer membrane	CARD domain binding|protein kinase binding|signal transducer activity				0						AGCCCTCAGCCCTCTGACCTC	0.587000													49	86					0	0	1	0	0
PROKR2	128674	broad.mit.edu	37	20	5283043	5283043	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr20:5283043C>T	uc010zqw.1	-	2	798	c.798G>A	c.(796-798)CGG>CGA	p.R266R	PROKR2_uc010zqx.1_Silent_p.R266R|PROKR2_uc010zqy.1_Silent_p.R266R	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	266	Cytoplasmic (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GGCAGCGCAGCCGCTTGCGAA	0.607000										HNSCC(71;0.22)			53	38					0	0	1	0	0
KIF16B	55614	broad.mit.edu	37	20	16359880	16359880	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr20:16359880C>T	uc002wpg.1	-	19	2925	c.2767G>A	c.(2767-2769)GAA>AAA	p.E923K	KIF16B_uc002wpe.1_Missense_Mutation_p.E305K|KIF16B_uc002wpf.1_Missense_Mutation_p.E305K|KIF16B_uc010gch.1_Missense_Mutation_p.E923K|KIF16B_uc010gci.1_Missense_Mutation_p.E923K|KIF16B_uc010gcj.1_Missense_Mutation_p.E934K	NM_024704	NP_078980	Q96L93	KI16B_HUMAN	kinesin-like motor protein C20orf23	923	Glu-rich.				cell communication|early endosome to late endosome transport|endoderm development|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|formation of primary germ layer|Golgi to endosome transport|microtubule-based movement|receptor catabolic process|regulation of receptor recycling	early endosome membrane|microtubule	ATP binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|plus-end-directed microtubule motor activity			skin(2)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|ovary(1)|kidney(1)	8						CTCTGCTTTTCTTCCAACAGA	0.413000													28	73					0	0	1	0	0
OVOL2	58495	broad.mit.edu	37	20	18022303	18022303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr20:18022303C>T	uc002wqi.1	-	3	629	c.386G>A	c.(385-387)CGT>CAT	p.R129H		NM_021220	NP_067043	Q9BRP0	OVOL2_HUMAN	zinc finger protein 339	129	C2H2-type 1.				negative regulation of keratinocyte differentiation|negative regulation of Notch signaling pathway|negative regulation of transcription by competitive promoter binding|regulation of cell cycle|regulation of keratinocyte proliferation|transcription, DNA-dependent	nucleus	DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)	1						GCGCTGCAGACGGAAGCCCTT	0.612000													63	57					0	0	1	0	0
ENTPD6	955	broad.mit.edu	37	20	25187900	25187900	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr20:25187900C>T	uc002wuj.2	+	3	423	c.243C>T	c.(241-243)GCC>GCT	p.A81A	ENTPD6_uc010zsy.1_Silent_p.A81A|ENTPD6_uc010gdj.1_Silent_p.A53A|ENTPD6_uc010zsz.1_Intron|ENTPD6_uc002wum.2_Silent_p.A64A|ENTPD6_uc010zta.1_Silent_p.A81A|ENTPD6_uc002wun.2_Silent_p.A81A|ENTPD6_uc002wuk.2_Silent_p.A80A|ENTPD6_uc002wul.2_Silent_p.A80A|ENTPD6_uc010ztb.1_Silent_p.A53A|ENTPD6_uc010ztc.1_Silent_p.A53A|ENTPD6_uc002wuo.2_Intron|ENTPD6_uc010ztd.1_5'Flank	NM_001247	NP_001238	O75354	ENTP6_HUMAN	ectonucleoside triphosphate diphosphohydrolase 6	81	Lumenal (Potential).					Golgi membrane|integral to membrane	nucleoside-diphosphatase activity				0						CCCCGGGGGCCCGGTGGGGTC	0.652000													69	54					0	0	1	0	0
ENTPD6	955	broad.mit.edu	37	20	25201921	25201921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr20:25201921G>A	uc002wuj.2	+	11	1177	c.997G>A	c.(997-999)GAG>AAG	p.E333K	ENTPD6_uc010zsy.1_Missense_Mutation_p.E333K|ENTPD6_uc010gdj.1_Missense_Mutation_p.E305K|ENTPD6_uc010zsz.1_Missense_Mutation_p.E115K|ENTPD6_uc002wum.2_Missense_Mutation_p.E316K|ENTPD6_uc010zta.1_Missense_Mutation_p.E333K|ENTPD6_uc002wun.2_Intron|ENTPD6_uc002wuk.2_Missense_Mutation_p.E332K|ENTPD6_uc002wul.2_Missense_Mutation_p.E332K|ENTPD6_uc010ztb.1_Missense_Mutation_p.E305K|ENTPD6_uc010ztc.1_Missense_Mutation_p.E305K|ENTPD6_uc002wuo.2_Missense_Mutation_p.E85K|ENTPD6_uc010ztd.1_Intron|ENTPD6_uc010gdk.1_5'Flank|ENTPD6_uc010gdl.1_5'Flank	NM_001247	NP_001238	O75354	ENTP6_HUMAN	ectonucleoside triphosphate diphosphohydrolase 6	333	Lumenal (Potential).					Golgi membrane|integral to membrane	nucleoside-diphosphatase activity				0						TTTCAAAGGAGAGTGGGAACA	0.517000													52	55					0	0	1	0	0
NANP	140838	broad.mit.edu	37	20	25596639	25596639	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr20:25596639C>T	uc002wuy.2	-	2	733	c.669G>A	c.(667-669)CCG>CCA	p.P223P		NM_152667	NP_689880	Q8TBE9	NANP_HUMAN	N-acetylneuraminic acid phosphatase	223					N-acetylneuraminate biosynthetic process		N-acylneuraminate-9-phosphatase activity|phosphoglycolate phosphatase activity				0						CCATGTAATGCGGAACTGGGG	0.423000													4	157					0	0	1	0	0
DEFB116	245930	broad.mit.edu	37	20	29896336	29896336	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr20:29896336G>A	uc010ztm.1	-	1	53	c.53C>T	c.(52-54)GCT>GTT	p.A18V		NM_001037731	NP_001032820	Q30KQ4	DB116_HUMAN	beta-defensin 116 precursor	18					defense response to bacterium	extracellular region					0	all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			AGTCTTTTGAGCCAGGATCAT	0.483000													55	123					0	0	1	0	0
BPIL1	80341	broad.mit.edu	37	20	31607537	31607537	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr20:31607537C>T	uc002wyj.2	+	11	1255	c.1061C>T	c.(1060-1062)TCC>TTC	p.S354F		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing	354						extracellular region	lipid binding			skin(2)|large_intestine(1)|ovary(1)	4						GCTTTCCAGTCCCTCTTCTCC	0.517000													15	65					0	0	1	0	0
ERGIC3	51614	broad.mit.edu	37	20	34136412	34136412	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr20:34136412C>T	uc002xct.2	+	6	681	c.612C>T	c.(610-612)TTC>TTT	p.F204F	ERGIC3_uc002xcr.1_Silent_p.F204F|ERGIC3_uc010zvg.1_Silent_p.F204F|ERGIC3_uc002xcs.2_Silent_p.F204F|ERGIC3_uc002xcu.2_Silent_p.F204F|ERGIC3_uc002xcv.2_Silent_p.F167F	NM_015966	NP_057050	Q9Y282	ERGI3_HUMAN	serologically defined breast cancer antigen 84	204	Lumenal (Potential).				vesicle-mediated transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi apparatus|integral to membrane	protein binding			large_intestine(2)|ovary(1)	3	Lung NSC(9;0.00489)|all_lung(11;0.00729)		BRCA - Breast invasive adenocarcinoma(18;0.0127)			TGTATGGCTTCTTGGAAGTCA	0.562000													16	40					0	0	1	0	0
PHF20	51230	broad.mit.edu	37	20	34526952	34526952	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr20:34526952C>T	uc002xek.1	+	16	2745	c.2634C>T	c.(2632-2634)TCC>TCT	p.S878S		NM_016436	NP_057520	Q9BVI0	PHF20_HUMAN	PHD finger protein 20	878					regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex	DNA binding|zinc ion binding			ovary(1)	1	Breast(12;0.00631)|all_lung(11;0.0145)					GCGATGATTCCCTTTCCCCGC	0.627000													36	116					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40790031	40790031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr20:40790031C>T	uc002xkg.2	-	17	2827	c.2643G>A	c.(2641-2643)ATG>ATA	p.M881I	PTPRT_uc010ggj.2_Missense_Mutation_p.M900I|PTPRT_uc010ggi.2_Missense_Mutation_p.M84I	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	881	Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GGCCTCTCTTCATCTGCGTGA	0.562000													60	147					0	0	1	0	0
VAPB	9217	broad.mit.edu	37	20	57016033	57016033	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr20:57016033C>T	uc002xza.2	+	5	738	c.467C>T	c.(466-468)TCT>TTT	p.S156F	VAPB_uc002xzb.2_RNA|VAPB_uc010zzo.1_Missense_Mutation_p.S33F|VAPB_uc002xzc.2_Intron	NM_004738	NP_004729	O95292	VAPB_HUMAN	VAMP-associated protein B/C	156	Cytoplasmic (Potential).				cell death|endoplasmic reticulum unfolded protein response|positive regulation of viral genome replication|sphingolipid metabolic process|virus-host interaction	endoplasmic reticulum membrane|Golgi apparatus|integral to membrane	beta-tubulin binding|enzyme binding|protein heterodimerization activity|protein homodimerization activity|structural molecule activity			kidney(1)	1	Lung NSC(12;0.000615)|all_lung(29;0.00186)		BRCA - Breast invasive adenocarcinoma(13;6.2e-12)|Epithelial(14;3.7e-08)|all cancers(14;3.88e-07)			GTGTCTAAGTCTCTGAGTTCT	0.388000													25	37					0	0	1	0	0
C20orf195	79025	broad.mit.edu	37	20	62187465	62187465	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr20:62187465G>A	uc002yfj.2	+	2	541	c.449G>A	c.(448-450)CGG>CAG	p.R150Q	C20orf195_uc002yfk.2_Missense_Mutation_p.R150Q	NM_024059	NP_076964	Q9BVV2	CT195_HUMAN	hypothetical protein LOC79025	150											0	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;9.69e-09)|all cancers(9;5.84e-08)|BRCA - Breast invasive adenocarcinoma(10;3.63e-06)			CCAGACCCACGGCCCTTCCTG	0.682000													21	38					0	0	1	0	0
PRPF6	24148	broad.mit.edu	37	20	62626271	62626271	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr20:62626271G>A	uc002yho.2	+	5	609	c.441G>A	c.(439-441)AGG>AGA	p.R147R	PRPF6_uc002yhp.2_Silent_p.R147R	NM_012469	NP_036601	O94906	PRP6_HUMAN	PRP6 pre-mRNA processing factor 6 homolog	147					assembly of spliceosomal tri-snRNP|positive regulation of transcription from RNA polymerase II promoter|spliceosome assembly	catalytic step 2 spliceosome|nucleoplasm|U4/U6 snRNP|U4/U6 x U5 tri-snRNP complex|U5 snRNP	androgen receptor binding|ribonucleoprotein binding|transcription coactivator activity			ovary(2)	2	all_cancers(38;6.47e-12)|all_epithelial(29;1.26e-13)|Lung NSC(23;9.37e-10)|all_lung(23;3.23e-09)					ATTTCCAGAGGAAGTTGGCAG	0.522000													62	52					0	0	1	0	0
PRPF6	24148	broad.mit.edu	37	20	62631108	62631108	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr20:62631108C>T	uc002yho.2	+	8	1187	c.1019C>T	c.(1018-1020)CCC>CTC	p.P340L	PRPF6_uc002yhp.2_Missense_Mutation_p.P340L	NM_012469	NP_036601	O94906	PRP6_HUMAN	PRP6 pre-mRNA processing factor 6 homolog	340					assembly of spliceosomal tri-snRNP|positive regulation of transcription from RNA polymerase II promoter|spliceosome assembly	catalytic step 2 spliceosome|nucleoplasm|U4/U6 snRNP|U4/U6 x U5 tri-snRNP complex|U5 snRNP	androgen receptor binding|ribonucleoprotein binding|transcription coactivator activity			ovary(2)	2	all_cancers(38;6.47e-12)|all_epithelial(29;1.26e-13)|Lung NSC(23;9.37e-10)|all_lung(23;3.23e-09)					GAGATGTGCCCCAAGGTGAGG	0.537000													24	44					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	11012936	11012936	+	RNA	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr21:11012936G>A	uc002yis.1	-	9		c.1685C>T						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TTACTTTTGTGACAATTTGTG	0.289000													3	23					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41465764	41465764	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr21:41465764G>A	uc002yyq.1	-	21	4186	c.3734C>T	c.(3733-3735)TCC>TTC	p.S1245F	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1245	Fibronectin type-III 4.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AATTCTGTAGGAAAACGAGTC	0.483000													31	44					0	0	1	0	0
ZDHHC8	29801	broad.mit.edu	37	22	20128178	20128179	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr22:20128178_20128179CC>TT	uc002zrq.2	+	6	805_806	c.699_700CC>TT	c.(697-702)ACCCGA>ACTTGA	p.R234*	ZDHHC8_uc002zrr.1_Nonsense_Mutation_p.R234*|ZDHHC8_uc010gsa.2_Nonsense_Mutation_p.R40*	NM_013373	NP_037505	Q9ULC8	ZDHC8_HUMAN	zinc finger, DHHC domain containing 8	234	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Colorectal(54;0.0993)					ACCCTTTCACCCGAGGCTGCTG	0.703000													22	30					0	0	1	0	0
MMP11	4320	broad.mit.edu	37	22	24122860	24122860	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr22:24122860C>T	uc002zxx.2	+	4	596	c.574C>T	c.(574-576)CAC>TAC	p.H192Y	MMP11_uc002zxy.2_RNA|MMP11_uc002zxz.2_5'Flank	NM_005940	NP_005931	P24347	MMP11_HUMAN	matrix metalloproteinase 11 preproprotein	192		Zinc 1 (By similarity).			collagen catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(2)|large_intestine(1)	3		Medulloblastoma(6;9.86e-08)|all_neural(6;0.000318)				AGGGGATGTCCACTTCGACTA	0.463000													67	49					0	0	1	0	0
HPS4	89781	broad.mit.edu	37	22	26860230	26860230	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr22:26860230G>A	uc003acl.2	-	11	2025	c.1366C>T	c.(1366-1368)CCC>TCC	p.P456S	HPS4_uc003aci.2_Missense_Mutation_p.P451S|HPS4_uc003acj.2_Missense_Mutation_p.P320S|HPS4_uc003ack.2_Missense_Mutation_p.P247S|HPS4_uc003acn.2_Missense_Mutation_p.P302S|HPS4_uc010gvd.1_Missense_Mutation_p.P474S|HPS4_uc003ach.2_Missense_Mutation_p.P191S	NM_022081	NP_071364	Q9NQG7	HPS4_HUMAN	light ear protein isoform a	456					lysosome organization|positive regulation of eye pigmentation|protein stabilization|protein targeting	lysosome|melanosome|membrane fraction|platelet dense granule	protein homodimerization activity				0						TCTGCTCTGGGAATGGGGGCT	0.607000									Hermansky-Pudlak_syndrome				161	129					0	0	1	0	0
TCN2	6948	broad.mit.edu	37	22	31019011	31019011	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr22:31019011C>T	uc003aip.1	+	8	1321	c.1163C>T	c.(1162-1164)GCG>GTG	p.A388V	TCN2_uc003aiq.1_Missense_Mutation_p.A384V|TCN2_uc003air.1_Missense_Mutation_p.A361V	NM_000355	NP_000346	P20062	TCO2_HUMAN	transcobalamin II precursor	388					cobalamin metabolic process|cobalamin transport|cobalt ion transport	extracellular space	cobalamin binding			central_nervous_system(1)	1					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	ATGGGGAAAGCGGCCGGAGAA	0.562000													61	127					0	0	1	0	0
KCTD17	79734	broad.mit.edu	37	22	37452391	37452391	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr22:37452391C>T	uc010gxb.2	+	3	352	c.330C>T	c.(328-330)ATC>ATT	p.I110I	KCTD17_uc010gxa.1_Silent_p.I110I|KCTD17_uc011amv.1_Silent_p.I117I|KCTD17_uc010gxc.2_Silent_p.I110I	NM_024681	NP_078957	Q8N5Z5	KCD17_HUMAN	potassium channel tetramerisation domain	117						voltage-gated potassium channel complex	identical protein binding|voltage-gated potassium channel activity				0						TCTACAACATCGGCCCGCTGA	0.612000													40	70					0	0	1	0	0
CYTH4	27128	broad.mit.edu	37	22	37678613	37678613	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr22:37678613G>A	uc003arf.2	+	1	119	c.3G>A	c.(1-3)ATG>ATA	p.M1I	CYTH4_uc003ard.3_Missense_Mutation_p.M1I|CYTH4_uc003are.2_Missense_Mutation_p.M1I|CYTH4_uc011amw.1_5'UTR|CYTH4_uc010gxe.2_RNA	NM_013385	NP_037517	Q9UIA0	CYH4_HUMAN	cytohesin 4	1					regulation of ARF protein signal transduction|regulation of cell adhesion	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						GCGTCGGAATGGACctgtgcc	0.338000													15	27					0	0	1	0	0
APOBEC3C	27350	broad.mit.edu	37	22	39413917	39413917	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr22:39413917C>T	uc003awr.2	+	3	424	c.321C>T	c.(319-321)TTC>TTT	p.F107F	APOBEC3D_uc011aod.1_Intron|APOBEC3D_uc011aoe.1_Intron|APOBEC3D_uc011aof.1_Intron	NM_014508	NP_055323	Q9NRW3	ABC3C_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	107					DNA demethylation|interspecies interaction between organisms|negative regulation of transposition		hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines|protein binding|zinc ion binding				0	Melanoma(58;0.04)					TGGCCGAGTTCCTGGCCAGGC	0.577000													236	150					0	0	1	0	0
CACNA1I	8911	broad.mit.edu	37	22	40073355	40073355	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr22:40073355C>T	uc003ayc.2	+	30	4864	c.4864C>T	c.(4864-4866)CTG>TTG	p.L1622L	CACNA1I_uc003ayd.2_Silent_p.L1587L|CACNA1I_uc003aye.2_Silent_p.L1537L|CACNA1I_uc003ayf.2_Silent_p.L1502L	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1622	Helical; Name=S5 of repeat IV; (Potential).|IV.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	GGTGGGCAACCTGGGCCTCCT	0.677000													8	29					0	0	1	0	0
SREBF2	6721	broad.mit.edu	37	22	42276872	42276872	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr22:42276872C>T	uc003bbi.2	+	10	2083	c.1914C>T	c.(1912-1914)CTC>CTT	p.L638L	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|SREBF2_uc003bbj.2_RNA	NM_004599	NP_004590	Q12772	SRBP2_HUMAN	sterol regulatory element-binding transcription	638	Cytoplasmic (Potential).				cholesterol metabolic process	ER to Golgi transport vesicle membrane|Golgi membrane|nucleus|SREBP-SCAP-Insig complex	protein C-terminus binding			breast(2)|ovary(1)|central_nervous_system(1)	4						GCTGGCTGCTCAAGAAAGTCT	0.662000													31	52					0	0	1	0	0
BRD1	23774	broad.mit.edu	37	22	50217213	50217213	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr22:50217213G>A	uc003biv.2	-	1	1240	c.753C>T	c.(751-753)ATC>ATT	p.I251I	BRD1_uc011arf.1_5'UTR|BRD1_uc011arg.1_Silent_p.I251I|BRD1_uc011arh.1_Silent_p.I251I|BRD1_uc003biu.3_Silent_p.I251I	NM_014577	NP_055392	O95696	BRD1_HUMAN	bromodomain containing protein 1	251	PHD-type.				histone H3 acetylation	MOZ/MORF histone acetyltransferase complex	zinc ion binding			pancreas(1)	1		all_cancers(38;6.11e-10)|all_epithelial(38;8.06e-09)|all_lung(38;6.64e-05)|Lung NSC(38;0.0011)|Breast(42;0.00235)|Ovarian(80;0.0139)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0369)|BRCA - Breast invasive adenocarcinoma(115;0.21)		GGCCCTCGGGGATGTAGGGCA	0.642000													32	21					0	0	1	0	0
MAPK8IP2	23542	broad.mit.edu	37	22	51043437	51043437	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr22:51043437C>T	uc003bmx.2	+	6	1827	c.1710C>T	c.(1708-1710)CTC>CTT	p.L570L	MAPK8IP2_uc003bmy.2_Silent_p.L543L|MAPK8IP2_uc011asc.1_5'Flank	NM_012324	NP_036456	Q13387	JIP2_HUMAN	mitogen-activated protein kinase 8 interacting	570					behavioral fear response|dendrite morphogenesis|MAPKKK cascade|nonassociative learning|positive regulation of anti-apoptosis|regulation of excitatory postsynaptic membrane potential|regulation of JNK cascade|regulation of receptor activity|regulation of synaptic transmission, glutamatergic|signal complex assembly|social behavior	cytoplasm|postsynaptic density	beta-amyloid binding|kinesin binding|MAP-kinase scaffold activity|protein kinase activator activity|protein kinase binding			large_intestine(2)|central_nervous_system(1)	3		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		OV - Ovarian serous cystadenocarcinoma(4;1.28e-70)|Epithelial(4;3.46e-65)|GBM - Glioblastoma multiforme(4;4.83e-06)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GCCCTGACCTCACTTTCTCCA	0.652000													88	71					0	0	1	0	0
CHL1	10752	broad.mit.edu	37	3	403449	403449	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:403449C>T	uc003bou.2	+	12	1597	c.1326C>T	c.(1324-1326)TTC>TTT	p.F442F	CHL1_uc003bot.2_Silent_p.F458F|CHL1_uc003bow.1_Silent_p.F442F|CHL1_uc011asi.1_Silent_p.F458F	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	442	Ig-like C2-type 5.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		ACAGTGCTTTCTTACATTGCG	0.408000													109	77					0	0	1	0	0
CNTN6	27255	broad.mit.edu	37	3	1418755	1418756	+	Missense_Mutation	DNP	GG	CA	CA			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:1418755_1418756GG>CA	uc003boz.2	+	17	2429_2430	c.2162_2163GG>CA	c.(2161-2163)TGG>TCA	p.W721S	CNTN6_uc011asj.1_Missense_Mutation_p.W649S|CNTN6_uc003bpa.2_Missense_Mutation_p.W721S	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	721	Fibronectin type-III 2.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		GTCATTACGTGGGAGGTAATTT	0.386000													32	104					0	0	1	0	0
VHL	7428	broad.mit.edu	37	3	10183810	10183811	+	Nonsense_Mutation	DNP	CG	TT	TT	rs5030829		TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:10183810_10183811CG>TT	uc003bvc.2	+	1	492_493	c.279_280CG>TT	c.(277-282)GGCGAG>GGTTAG	p.E94*	VHL_uc003bvd.2_Nonsense_Mutation_p.E94*	NM_000551	NP_000542	P40337	VHL_HUMAN	von Hippel-Lindau tumor suppressor isoform 1	94			Missing (in VHLD; type I).		anti-apoptosis|cell morphogenesis|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of cell differentiation|positive regulation of transcription, DNA-dependent|protein stabilization|protein ubiquitination|proteolysis	cytosol|endoplasmic reticulum|membrane|mitochondrion|nucleus	protein binding|transcription factor binding	p.E94fs*39(1)|p.E94*(1)|p.E94fs*62(1)|p.R60fs*35(1)|p.P95fs*38(1)|p.E94fs*37(1)|p.E94fs*34(1)|p.V84_E94>E(1)|p.E94fs*66(1)|p.D92fs*65(1)|p.N90fs*38(1)		kidney(1273)|soft_tissue(24)|adrenal_gland(15)|large_intestine(13)|pancreas(5)|endometrium(4)|thyroid(3)|upper_aerodigestive_tract(3)|central_nervous_system(2)|lung(2)|pleura(1)|paratesticular_tissues(1)	1346				Kidney(1;0.000404)|KIRC - Kidney renal clear cell carcinoma(1;0.000569)		ACTTCGACGGCGAGCCGCAGCC	0.703000		1	D|Mis|N|F|S		renal|hemangioma|pheochromocytoma	renal|hemangioma|pheochromocytoma			von_Hippel-Lindau_disease|Chuvash_Polycythemia_|Pheochromocytoma_(Adrenal)_Familial				41	32					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10452365	10452365	+	Missense_Mutation	SNP	C	T	T	rs41293357		TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:10452365C>T	uc003bvt.2	-	3	773	c.334G>A	c.(334-336)GAG>AAG	p.E112K	ATP2B2_uc003bvv.2_Missense_Mutation_p.E112K|ATP2B2_uc003bvw.2_Missense_Mutation_p.E112K|ATP2B2_uc010hdp.2_Missense_Mutation_p.E112K|ATP2B2_uc010hdo.2_5'UTR	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	112	Helical; (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						GCGGCAATCTCCAGGATGATG	0.572000													333	180					0	0	1	0	0
RFTN1	23180	broad.mit.edu	37	3	16535300	16535300	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:16535300G>A	uc003cay.2	-	2	359	c.77C>T	c.(76-78)CCT>CTT	p.P26L		NM_015150	NP_055965	Q14699	RFTN1_HUMAN	raft-linking protein	26						plasma membrane				ovary(3)|central_nervous_system(1)	4						TTCCACCTGAGGCCTCTTCAA	0.483000													146	324					0	0	1	0	0
VENTXP7	391518	broad.mit.edu	37	3	21447950	21447950	+	RNA	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:21447950C>T	uc003ccd.2	+	1		c.733C>T				NR_002311				Homo sapiens VENT homeobox (Xenopus laevis) pseudogene 7 (VENTXP7), non-coding RNA.												0						CAGCCCTGTCCACGGGGCCCC	0.657000													6	10					0	0	1	0	0
NR1D2	9975	broad.mit.edu	37	3	24003489	24003489	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:24003489C>T	uc003ccs.2	+	5	858	c.539C>T	c.(538-540)CCT>CTT	p.P180L	NR1D2_uc010hfd.2_RNA|NR1D2_uc011awk.1_Missense_Mutation_p.P105L	NM_005126	NP_005117	Q14995	NR1D2_HUMAN	nuclear receptor subfamily 1, group D, member 2	180					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			urinary_tract(1)|kidney(1)|skin(1)	3						GGTCGTATTCCTAAGCGTGAA	0.338000													35	25					0	0	1	0	0
RARB	5915	broad.mit.edu	37	3	25611354	25611354	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:25611354G>A	uc011awl.1	+	4	641	c.575G>A	c.(574-576)CGA>CAA	p.R192Q	RARB_uc003cdi.1_Missense_Mutation_p.R73Q|RARB_uc003cdh.2_Missense_Mutation_p.R185Q	NM_016152	NP_057236	P10826	RARB_HUMAN	retinoic acid receptor, beta isoform 2	192	Hinge.				embryonic digestive tract development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	protein binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|large_intestine(1)|pancreas(1)	3					Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tamibarotene(DB04942)|Tazarotene(DB00799)	GAGAAGATCCGAAAAGCTCAC	0.483000													80	47					0	0	1	0	0
MLH1	4292	broad.mit.edu	37	3	37081681	37081681	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:37081681C>T	uc003cgl.2	+	14	1623	c.1563C>T	c.(1561-1563)CTC>CTT	p.L521L	MLH1_uc011aye.1_Silent_p.L280L|MLH1_uc011ayb.1_Silent_p.L280L|MLH1_uc010hge.2_Silent_p.L521L|MLH1_uc003cgn.3_Silent_p.L280L|MLH1_uc011ayc.1_Silent_p.L423L|MLH1_uc011ayd.1_Silent_p.L280L|MLH1_uc003cgo.2_Silent_p.L280L|MLH1_uc010hgj.1_Silent_p.L163L|MLH1_uc010hgk.2_Silent_p.L163L|MLH1_uc010hgl.1_Silent_p.L96L|MLH1_uc010hgn.2_Silent_p.L163L|MLH1_uc010hgm.2_Intron|MLH1_uc010hgo.2_Intron|MLH1_uc010hgp.2_5'Flank|MLH1_uc010hgq.2_5'Flank	NM_000249	NP_000240	P40692	MLH1_HUMAN	MutL protein homolog 1	521	Interaction with EXO1.				mismatch repair|somatic hypermutation of immunoglobulin genes	chiasma|MutLalpha complex|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|protein binding	p.0?(1)		large_intestine(40)|haematopoietic_and_lymphoid_tissue(8)|ovary(6)|pancreas(5)|stomach(3)|central_nervous_system(3)|endometrium(3)|breast(3)|prostate(3)|skin(2)|NS(1)	77						TTGCAGTTCTCCGGGAGATGT	0.458000		1	D|Mis|N|F|S		colorectal|endometrial|ovarian|CNS	colorectal|endometrial|ovarian|CNS		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				79	51					0	0	1	0	0
OXSR1	9943	broad.mit.edu	37	3	38284240	38284240	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:38284240C>T	uc003chy.2	+	12	1423	c.1081C>T	c.(1081-1083)CGA>TGA	p.R361*	OXSR1_uc010hhb.2_Nonsense_Mutation_p.R295*	NM_005109	NP_005100	O95747	OXSR1_HUMAN	oxidative-stress responsive 1	361					intracellular protein kinase cascade|response to oxidative stress		ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		TTAGTCTCCCCGAGTGAAAGA	0.338000													50	53					0	0	1	0	0
ACVR2B	93	broad.mit.edu	37	3	38524693	38524693	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:38524693C>T	uc003cif.2	+	11	1433	c.1409C>T	c.(1408-1410)TCC>TTC	p.S470F	ACVR2B_uc003cig.2_Missense_Mutation_p.S261F	NM_001106	NP_001097	Q13705	AVR2B_HUMAN	activin A receptor, type IIB precursor	470	Cytoplasmic (Potential).|Protein kinase.				activin receptor signaling pathway|anterior/posterior pattern formation|BMP signaling pathway|positive regulation of activin receptor signaling pathway|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|regulation of transcription, DNA-dependent	cell surface|cytoplasm|integral to plasma membrane	activin receptor activity|ATP binding|growth factor binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|transforming growth factor beta receptor activity			lung(1)	1	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0565)|Kidney(284;0.071)		GCTCGCTTGTCCGCGGGCTGT	0.597000													229	124					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38752339	38752339	+	Missense_Mutation	SNP	C	A	A	rs149155352		TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:38752339C>A	uc003ciq.2	-	23	4139	c.4139G>T	c.(4138-4140)CGG>CTG	p.R1380L		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1380	III.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	ACTCACCTCCCGGGAATCAAC	0.512000													24	36					2.12542e-12	2.13689e-12	1	1	0
SCN10A	6336	broad.mit.edu	37	3	38763757	38763757	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:38763757C>T	uc003ciq.2	-	19	3499	c.3499G>A	c.(3499-3501)GGA>AGA	p.G1167R		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1167	III.|Helical; Name=S1 of repeat III; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	ACCAGAGATCCACTGCTGAGC	0.547000													39	102					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38781039	38781039	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:38781039C>T	uc003ciq.2	-	14	2247	c.2247G>A	c.(2245-2247)AAG>AAA	p.K749K		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	749	II.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	ACAGGCTTCCCTTCTTGGCCA	0.502000													32	75					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38888345	38888345	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:38888345A>T	uc011ays.1	-	26	5415	c.5216T>A	c.(5215-5217)ATT>AAT	p.I1739N		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1739					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CTTTTGAATAATAGCAGCACC	0.373000													131	90					0	0	1	0	0
CTNNB1	1499	broad.mit.edu	37	3	41267290	41267290	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:41267290A>G	uc010hia.1	+	7	1030	c.874A>G	c.(874-876)AAA>GAA	p.K292E	CTNNB1_uc003ckp.2_Missense_Mutation_p.K292E|CTNNB1_uc003ckq.2_Missense_Mutation_p.K292E|CTNNB1_uc003ckr.2_Missense_Mutation_p.K292E|CTNNB1_uc011azf.1_Missense_Mutation_p.K285E|CTNNB1_uc011azg.1_Missense_Mutation_p.K220E|uc010hib.1_5'Flank	NM_001904	NP_001895	P35222	CTNB1_HUMAN	beta-catenin	292	ARM 4.			K->A: Abolishes or strongly reduces AXIN1 and AXIN2 binding.	adherens junction assembly|androgen receptor signaling pathway|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway involved in negative regulation of apoptosis|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell-cell adhesion|cell-matrix adhesion|cellular component disassembly involved in apoptosis|cellular response to growth factor stimulus|cellular response to indole-3-methanol|central nervous system vasculogenesis|cytoskeletal anchoring at plasma membrane|determination of dorsal/ventral asymmetry|dorsal/ventral axis specification|ectoderm development|embryonic axis specification|embryonic foregut morphogenesis|embryonic leg joint morphogenesis|endodermal cell fate commitment|endothelial tube morphogenesis|epithelial to mesenchymal transition|gastrulation with mouth forming second|glial cell fate determination|hair follicle morphogenesis|hair follicle placode formation|hindbrain development|liver development|lung cell differentiation|lung induction|lung-associated mesenchyme development|male genitalia development|mesenchymal cell proliferation involved in lung development|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of osteoclast differentiation|negative regulation of transcription from RNA polymerase II promoter|nephron tubule formation|odontogenesis of dentine-containing tooth|oocyte development|pancreas development|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of branching involved in lung morphogenesis|positive regulation of epithelial cell proliferation involved in prostate gland development|positive regulation of fibroblast growth factor receptor signaling pathway|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of muscle cell differentiation|positive regulation of osteoblast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein localization at cell surface|proximal/distal pattern formation|regulation of angiogenesis|regulation of calcium ion import|regulation of centriole-centriole cohesion|regulation of centromeric sister chromatid cohesion|regulation of fibroblast proliferation|regulation of nephron tubule epithelial cell differentiation|regulation of protein localization at cell surface|regulation of smooth muscle cell proliferation|regulation of T cell proliferation|renal inner medulla development|renal outer medulla development|renal vesicle formation|response to drug|response to estradiol stimulus|Schwann cell proliferation|smooth muscle cell differentiation|synapse organization|synaptic vesicle transport|T cell differentiation in thymus|thymus development|trachea formation	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin-TCF7L2 complex|catenin complex|cell cortex|cell-substrate adherens junction|centrosome|dendritic shaft|desmosome|fascia adherens|internal side of plasma membrane|lamellipodium|lateral plasma membrane|microvillus membrane|perinuclear region of cytoplasm|protein-DNA complex|synapse|transcription factor complex|Z disc|zonula adherens	alpha-catenin binding|androgen receptor binding|cadherin binding|estrogen receptor binding|I-SMAD binding|ion channel binding|protein binding|protein C-terminus binding|protein kinase binding|protein phosphatase binding|R-SMAD binding|RPTP-like protein binding|signal transducer activity|specific RNA polymerase II transcription factor activity|structural molecule activity|transcription coactivator activity|transcription regulatory region DNA binding		CTNNB1/PLAG1(60)	liver(806)|soft_tissue(609)|large_intestine(243)|endometrium(222)|kidney(172)|stomach(157)|central_nervous_system(139)|ovary(104)|skin(97)|pancreas(91)|adrenal_gland(85)|pituitary(81)|salivary_gland(62)|haematopoietic_and_lymphoid_tissue(57)|thyroid(55)|biliary_tract(41)|lung(38)|prostate(24)|bone(20)|small_intestine(17)|cervix(9)|parathyroid(9)|urinary_tract(8)|breast(7)|oesophagus(5)|NS(3)|pleura(2)|upper_aerodigestive_tract(2)|eye(1)	3166				KIRC - Kidney renal clear cell carcinoma(284;0.0028)|Kidney(284;0.00294)	Lithium(DB01356)	AACAAATGTTAAATTCTTGGC	0.388000		15	H|Mis|T	PLAG1	colorectal|cvarian| hepatoblastoma|others|pleomorphic salivary adenoma				Pilomatrixoma_Familial_Clustering_of				20	39					0	0	1	0	0
LTF	4057	broad.mit.edu	37	3	46482954	46482954	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:46482954C>T	uc003cpq.2	-	14	1714	c.1676G>A	c.(1675-1677)GGA>GAA	p.G559E	LTF_uc003fzr.2_Missense_Mutation_p.G515E|LTF_uc010hjh.2_Missense_Mutation_p.G557E|LTF_uc003cpr.2_Missense_Mutation_p.G546E	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	559	Transferrin-like 2.				cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	TGCAACGTCTCCAGCATTCTC	0.393000													58	105					0	0	1	0	0
P4HTM	54681	broad.mit.edu	37	3	49043552	49043552	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:49043552G>A	uc003cvg.2	+	8	1569	c.1220G>A	c.(1219-1221)GGA>GAA	p.G407E	P4HTM_uc003cvh.2_Missense_Mutation_p.G468E|WDR6_uc011bbx.1_5'Flank|WDR6_uc003cvj.2_5'Flank|WDR6_uc011bby.1_5'Flank|WDR6_uc010hkn.2_5'Flank|WDR6_uc011bbz.1_5'Flank	NM_177939	NP_808808	Q9NXG6	P4HTM_HUMAN	hypoxia-inducible factor prolyl 4-hydroxylase	407	Lumenal (Potential).|Fe2OG dioxygenase.					endoplasmic reticulum membrane|integral to membrane	calcium ion binding|iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			skin(1)|pancreas(1)	2					Vitamin C(DB00126)	TGTGACAAGGGAAACCTGCGT	0.607000													122	101					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49691727	49691727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:49691727C>T	uc003cxe.3	+	5	4852	c.4738C>T	c.(4738-4740)CCG>TCG	p.P1580S		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	1580					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CTCCACCTCCCCGCTCTGCTC	0.622000													41	112					0	0	1	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54537612	54537612	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:54537612C>T	uc003dhf.2	+	5	523	c.475C>T	c.(475-477)CAT>TAT	p.H159Y	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.H65Y|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Intron	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	159	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		CCCAAATGACCATTTTAATAA	0.403000													51	32					0	0	1	0	0
CACNA2D3	55799	broad.mit.edu	37	3	55107575	55107575	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:55107575G>A	uc003dhf.2	+	36	3139	c.3091G>A	c.(3091-3093)GAA>AAA	p.E1031K	CACNA2D3_uc003dhg.1_Missense_Mutation_p.E937K|CACNA2D3_uc003dhh.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	1031	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		GGCACCCATTGAAATCAGGTA	0.502000													62	45					0	0	1	0	0
SNTN	132203	broad.mit.edu	37	3	63645456	63645456	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:63645456C>T	uc003dlr.2	+	3	221	c.201C>T	c.(199-201)TTC>TTT	p.F67F		NM_001080537	NP_001074006	A6NMZ2	SNTAN_HUMAN	sentan, cilia apical structure protein	67						cilium	calcium ion binding			ovary(1)	1						CTCTGATTTTCAGAAATTCTT	0.388000													45	140					0	0	1	0	0
EPHA3	2042	broad.mit.edu	37	3	89390208	89390208	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:89390208C>T	uc003dqy.2	+	4	1182	c.957C>T	c.(955-957)TCC>TCT	p.S319S	EPHA3_uc003dqx.1_Silent_p.S319S|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	319	Extracellular (Potential).|Cys-rich.					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		ACCCTCCATCCATGGCTTGTA	0.438000										TSP Lung(6;0.00050)			153	111					0	0	1	0	0
OR5K1	26339	broad.mit.edu	37	3	98189338	98189338	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:98189338G>A	uc003dsm.2	+	1	918	c.918G>A	c.(916-918)ATG>ATA	p.M306I		NM_001004736	NP_001004736	Q8NHB7	OR5K1_HUMAN	olfactory receptor, family 5, subfamily K,	306	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)	1						AAATTCTGATGAAGAAATAAT	0.313000													4	9					0	0	1	0	0
CEP97	79598	broad.mit.edu	37	3	101484342	101484342	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:101484342C>T	uc003dvk.1	+	11	2572	c.2545C>T	c.(2545-2547)CAG>TAG	p.Q849*	CEP97_uc011bhf.1_Nonsense_Mutation_p.Q790*|CEP97_uc003dvl.1_Nonsense_Mutation_p.Q571*|CEP97_uc003dvm.1_Nonsense_Mutation_p.Q687*	NM_024548	NP_078824	Q8IW35	CEP97_HUMAN	centrosomal protein 97kDa	849						centrosome|nucleus	protein binding			ovary(2)	2						TCAGGGGCAGCAGCCAGAATG	0.398000													47	168					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	121980907	121980907	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:121980907C>T	uc003eev.3	+	4	1397	c.1025C>T	c.(1024-1026)TCT>TTT	p.S342F	CASR_uc003eew.3_Missense_Mutation_p.S342F	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	342	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CCCAGGAAGTCTGTCCACAAT	0.512000													57	6					0	0	1	0	0
SLC12A8	84561	broad.mit.edu	37	3	124837619	124837619	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:124837619C>T	uc003ehv.3	-	8	1017	c.906G>A	c.(904-906)GCG>GCA	p.A302A	SLC12A8_uc003ehw.3_Silent_p.A331A|SLC12A8_uc010hrz.1_3'UTR|SLC12A8_uc003eht.3_Silent_p.A103A|SLC12A8_uc003ehu.3_Silent_p.A55A|SLC12A8_uc010hry.2_Silent_p.A55A	NM_024628	NP_078904	A0AV02	S12A8_HUMAN	solute carrier family 12, member 8	302					potassium ion transport	integral to membrane	symporter activity				0						TCACCTTTTCCGCTATCAGGA	0.532000													21	19					0	0	1	0	0
ASTE1	28990	broad.mit.edu	37	3	130735079	130735079	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:130735079G>A	uc003env.1	-	5	2060	c.1618C>T	c.(1618-1620)CAC>TAC	p.H540Y	ATP2C1_uc011blh.1_Silent_p.V941V|ATP2C1_uc011bli.1_Silent_p.V970V|ATP2C1_uc003enm.2_3'UTR|ATP2C1_uc003enn.2_Silent_p.V920V|ATP2C1_uc003enp.2_3'UTR|ATP2C1_uc003enr.2_3'UTR|ATP2C1_uc003ens.2_Silent_p.V946V|ATP2C1_uc003ent.2_Silent_p.V936V|ASTE1_uc010htm.1_Missense_Mutation_p.H540Y|ASTE1_uc011blj.1_RNA	NM_014065	NP_054784	Q2TB18	ASTE1_HUMAN	asteroid homolog 1	540					DNA repair		nuclease activity				0						CAGAAGATGTGAGCTGTGTCT	0.537000													142	12					0	0	1	0	0
NMNAT3	349565	broad.mit.edu	37	3	139346556	139346556	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:139346556C>T	uc003etj.2	-	1	51	c.11G>A	c.(10-12)CGA>CAA	p.R4Q	NMNAT3_uc003etk.2_Intron|NMNAT3_uc003etl.2_RNA|NMNAT3_uc010hul.2_Missense_Mutation_p.R4Q	NM_178177	NP_835471	Q96T66	NMNA3_HUMAN	nicotinamide mononucleotide adenylyltransferase	4					water-soluble vitamin metabolic process	cytosol|mitochondrion	ATP binding|nicotinamide-nucleotide adenylyltransferase activity|nicotinate-nucleotide adenylyltransferase activity				0						CACAGGTATTCGGCTCTTCAT	0.522000													16	19					0	0	1	0	0
ACPL2	92370	broad.mit.edu	37	3	141011959	141011959	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:141011959T>A	uc003etu.2	+	8	1654	c.1355T>A	c.(1354-1356)TTG>TAG	p.L452*	ACPL2_uc003etv.2_Nonsense_Mutation_p.L452*|ACPL2_uc011bna.1_Nonsense_Mutation_p.L414*|ACPL2_uc011bnb.1_Nonsense_Mutation_p.L435*	NM_152282	NP_689495	Q8TE99	ACPL2_HUMAN	acid phosphatase-like 2 precursor	452						extracellular region	acid phosphatase activity			skin(1)	1						CTTGAAAACTTGGTCCGCTTT	0.483000													99	50					0	0	1	0	0
ZIC4	84107	broad.mit.edu	37	3	147114001	147114001	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:147114001G>A	uc003ewd.1	-	3	599	c.326C>T	c.(325-327)GCG>GTG	p.A109V	ZIC4_uc003ewc.1_Missense_Mutation_p.A39V|ZIC4_uc011bno.1_Missense_Mutation_p.A159V	NM_032153	NP_115529	Q8N9L1	ZIC4_HUMAN	zinc finger protein of the cerebellum 4	109						nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						ACCGTGGGGCGCAGCGAGGTT	0.706000													3	57					0	0	1	0	0
SELT	51714	broad.mit.edu	37	3	150321205	150321206	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:150321205_150321206CC>TT	uc011bnx.1	+	1	140_141	c.56_57CC>TT	c.(55-57)GCC>GTT	p.A19V	SERP1_uc003exz.2_5'Flank|uc003eye.1_5'Flank	NM_016275	NP_057359	P62341	SELT_HUMAN	selenoprotein T precursor	19					cell redox homeostasis|selenocysteine incorporation		selenium binding				0			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			CGGAGCGAGGCCTCGGCCAATC	0.609000													40	14					0	0	1	0	0
WDR49	151790	broad.mit.edu	37	3	167246922	167246922	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:167246922G>A	uc003fev.1	-	10	1574	c.1268C>T	c.(1267-1269)TCG>TTG	p.S423L	WDR49_uc003feu.1_Missense_Mutation_p.S248L|WDR49_uc011bpd.1_Missense_Mutation_p.S487L|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	423	WD 7.									large_intestine(1)|ovary(1)|skin(1)	3						CATAATAATCGATCCAACTCC	0.363000													23	26					0	0	1	0	0
SERPINI1	5274	broad.mit.edu	37	3	167508241	167508241	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:167508241C>T	uc003ffa.3	+	3	530	c.332C>T	c.(331-333)TCC>TTC	p.S111F	SERPINI1_uc003ffb.3_Missense_Mutation_p.S111F	NM_001122752	NP_001116224	Q99574	NEUS_HUMAN	neuroserpin precursor	111					central nervous system development|peripheral nervous system development|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(1)	1						ATTGCCAATTCCTTGTTTGTG	0.328000													30	92					0	0	1	0	0
DVL3	1857	broad.mit.edu	37	3	183887840	183887840	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:183887840C>T	uc003fms.2	+	14	1685	c.1545C>T	c.(1543-1545)GCC>GCT	p.A515A	DVL3_uc011bqw.1_Silent_p.A498A|DVL3_uc003fmt.2_Silent_p.A186A|DVL3_uc003fmu.2_Silent_p.A347A	NM_004423	NP_004414	Q92997	DVL3_HUMAN	dishevelled 3	515					canonical Wnt receptor signaling pathway|intracellular signal transduction|positive regulation of JUN kinase activity|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent	cytoplasm	beta-catenin binding|frizzled binding|protease binding|protein heterodimerization activity|signal transducer activity			ovary(1)|lung(1)|breast(1)	3	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.08e-34)|OV - Ovarian serous cystadenocarcinoma(80;1.31e-22)			CCAGTGGCGCCTCTGACCAGG	0.657000													64	150					0	0	1	0	0
ATP13A5	344905	broad.mit.edu	37	3	193082039	193082039	+	Missense_Mutation	SNP	G	A	A	rs148527761	by1000genomes	TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:193082039G>A	uc011bsq.1	-	2	94	c.94C>T	c.(94-96)CGG>TGG	p.R32W		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	32					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		AAGGCTTTCCGTACATTGTGG	0.463000													103	243					0	0	1	0	0
ZNF718	255403	broad.mit.edu	37	4	155555	155555	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:155555C>T	uc003fzt.3	+	8	1213	c.1080C>T	c.(1078-1080)ATC>ATT	p.I360I	ZNF595_uc003fzu.1_Intron|ZNF718_uc010iaz.2_RNA|ZNF718_uc003fzw.3_Missense_Mutation_p.S140F	NM_001039127	NP_001034216	Q3SXZ3	ZN718_HUMAN	zinc finger protein 718	360	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(4;0.0738)|all_epithelial(65;0.139)		Lung(54;0.0681)|Epithelial(2;0.0838)|all cancers(2;0.135)|LUSC - Lung squamous cell carcinoma(95;0.18)		ATAAGAGAATCCATACTGGAG	0.373000													17	20					0	0	1	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6107636	6107636	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:6107636C>T	uc003giu.3	-	3	464	c.188G>A	c.(187-189)CGA>CAA	p.R63Q	JAKMIP1_uc010idb.1_Missense_Mutation_p.R63Q|JAKMIP1_uc010idc.1_Intron|JAKMIP1_uc010idd.1_Missense_Mutation_p.R63Q|JAKMIP1_uc011bwc.1_Intron|JAKMIP1_uc003giv.3_Missense_Mutation_p.R63Q|JAKMIP1_uc010ide.2_Missense_Mutation_p.R63Q	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	63	Potential.|Mediates association with microtubules.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						CGTGTGCCGTCGCTGCTCCTG	0.617000													39	38					0	0	1	0	0
PPP2R2C	5522	broad.mit.edu	37	4	6325200	6325200	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:6325200C>T	uc003gjc.2	-	9	1543	c.1173G>A	c.(1171-1173)CGG>CGA	p.R391R	PPP2R2C_uc003gjb.2_Silent_p.R374R|PPP2R2C_uc011bwd.1_Silent_p.R384R|PPP2R2C_uc011bwe.1_Silent_p.R384R|PPP2R2C_uc003gja.2_Silent_p.R391R	NM_020416	NP_065149	Q9Y2T4	2ABG_HUMAN	gamma isoform of regulatory subunit B55, protein	391					signal transduction	protein phosphatase type 2A complex	protein phosphatase type 2A regulator activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						CGCACACGCGCCGTGGCTTGA	0.627000													38	21					0	0	1	0	0
PPP2R2C	5522	broad.mit.edu	37	4	6349649	6349649	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:6349649G>A	uc003gjc.2	-	6	1084	c.714C>T	c.(712-714)TTC>TTT	p.F238F	PPP2R2C_uc003gjb.2_Silent_p.F221F|PPP2R2C_uc011bwd.1_Silent_p.F231F|PPP2R2C_uc011bwe.1_Silent_p.F231F|PPP2R2C_uc003gja.2_Silent_p.F238F|PPP2R2C_uc003gjd.1_Silent_p.F326F	NM_020416	NP_065149	Q9Y2T4	2ABG_HUMAN	gamma isoform of regulatory subunit B55, protein	238	WD 4.				signal transduction	protein phosphatase type 2A complex	protein phosphatase type 2A regulator activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						TGCTGTAGACGAAGAGGTTGC	0.612000													27	48					0	0	1	0	0
MAN2B2	23324	broad.mit.edu	37	4	6611628	6611628	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:6611628T>C	uc003gjf.1	+	13	2146	c.2110T>C	c.(2110-2112)TAC>CAC	p.Y704H	MAN2B2_uc003gje.1_Missense_Mutation_p.Y704H|MAN2B2_uc011bwf.1_Missense_Mutation_p.Y653H	NM_015274	NP_056089	Q9Y2E5	MA2B2_HUMAN	mannosidase, alpha, class 2B, member 2	704					mannose metabolic process	extracellular region	alpha-mannosidase activity|carbohydrate binding|zinc ion binding			ovary(2)	2						AGAGCAGGAGTACCAAGCCGG	0.597000													29	35					0	0	1	0	0
PI4K2B	55300	broad.mit.edu	37	4	25278737	25278737	+	Silent	SNP	T	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:25278737T>C	uc003grk.2	+	10	1507	c.1374T>C	c.(1372-1374)GGT>GGC	p.G458G	PI4K2B_uc011bxs.1_Silent_p.G362G	NM_018323	NP_060793	Q8TCG2	P4K2B_HUMAN	phosphatidylinositol 4-kinase type 2 beta	458						cytoplasm|membrane	1-phosphatidylinositol 4-kinase activity|ATP binding			ovary(2)|skin(2)	4		Breast(46;0.173)				GAAGTCAGGGTCGGATTGTCC	0.453000													47	49					0	0	1	0	0
TLR10	81793	broad.mit.edu	37	4	38777028	38777028	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:38777028G>A	uc003gti.2	-	2	563	c.184C>T	c.(184-186)CAA>TAA	p.Q62*	TLR10_uc003gtj.2_Nonsense_Mutation_p.Q62*|TLR10_uc003gtk.2_Nonsense_Mutation_p.Q62*	NM_030956	NP_112218	Q9BXR5	TLR10_HUMAN	toll-like receptor 10 precursor	62	Extracellular (Potential).|LRR 2.				inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane	transmembrane receptor activity			lung(1)|breast(1)	2						CTCTGGAGTTGAAAAAGGAGG	0.418000													19	30					0	0	1	0	0
NSUN7	79730	broad.mit.edu	37	4	40796416	40796416	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:40796416C>T	uc003gvj.3	+	9	1700	c.1205C>T	c.(1204-1206)TCT>TTT	p.S402F	NSUN7_uc003gvi.3_Missense_Mutation_p.S402F	NM_024677	NP_078953			NOL1/NOP2/Sun domain family, member 7												0						AAAGATCACTCTCAAGGAGGC	0.328000													26	25					0	0	1	0	0
APBB2	323	broad.mit.edu	37	4	40818272	40818272	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:40818272C>T	uc003gvl.2	-	18	2744	c.2114G>A	c.(2113-2115)CGA>CAA	p.R705Q	APBB2_uc010ifu.2_Missense_Mutation_p.R277Q|APBB2_uc003gvm.2_Missense_Mutation_p.R683Q|APBB2_uc003gvn.2_Missense_Mutation_p.R706Q|APBB2_uc003gvk.2_Missense_Mutation_p.R157Q	NM_173075	NP_775098	Q92870	APBB2_HUMAN	amyloid beta A4 precursor protein-binding,	705	PID 2.				cell cycle arrest|intracellular signal transduction|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|regulation of transcription, DNA-dependent	growth cone|lamellipodium|membrane|nucleus|synapse	beta-amyloid binding|transcription factor binding			ovary(2)|large_intestine(1)	3						CTTCTGATATCGTAACTGAAA	0.383000													35	55					0	0	1	0	0
GABRG1	2565	broad.mit.edu	37	4	46099233	46099233	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:46099233G>A	uc003gxb.2	-	2	390	c.238C>T	c.(238-240)CGT>TGT	p.R80C		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	80	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		ATATCTGGACGAAGTTTATTG	0.348000													21	23					0	0	1	0	0
GABRB1	2560	broad.mit.edu	37	4	47033990	47033990	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:47033990G>A	uc003gxh.2	+	2	514	c.140G>A	c.(139-141)GGA>GAA	p.G47E	GABRB1_uc011bze.1_5'UTR|GABRB1_uc011bzd.1_Missense_Mutation_p.G47E|GABRB1_uc010igg.2_RNA	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	47	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	TTGCTCAAAGGATATGACATT	0.443000													114	148					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79429998	79429998	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:79429998C>T	uc003hlb.2	+	63	10058	c.9618C>T	c.(9616-9618)TTC>TTT	p.F3206F	FRAS1_uc003hlc.1_Silent_p.F208F	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3201	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						ACCCTCATTTCCCCAGATACG	0.567000													10	21					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79430112	79430112	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:79430112C>T	uc003hlb.2	+	63	10172	c.9732C>T	c.(9730-9732)CCC>CCT	p.P3244P	FRAS1_uc003hlc.1_Silent_p.P246P	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3239	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CCCGGTCTCCCTTTGAAACCA	0.582000													37	48					0	0	1	0	0
KLHL8	57563	broad.mit.edu	37	4	88085181	88085182	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:88085181_88085182GG>AA	uc011cdb.1	-	9	1972_1973	c.1587_1588CC>TT	c.(1585-1590)CCCCGA>CCTTGA	p.R530*	KLHL8_uc003hql.1_Nonsense_Mutation_p.R530*|KLHL8_uc003hqm.1_Nonsense_Mutation_p.R454*|KLHL8_uc003hqn.1_Nonsense_Mutation_p.R347*|KLHL8_uc010ikj.1_Nonsense_Mutation_p.R179*	NM_020803	NP_065854	Q9P2G9	KLHL8_HUMAN	kelch-like 8	530	Kelch 5.										0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000603)		TTGTTGCTTCGGGGGTCATACC	0.411000													29	62					0	0	1	0	0
UNC5C	8633	broad.mit.edu	37	4	96140241	96140241	+	Silent	SNP	C	T	T	rs147827953	byFrequency	TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:96140241C>T	uc003htp.1	-	9	1678	c.1524G>A	c.(1522-1524)TCG>TCA	p.S508S	UNC5C_uc010ilc.1_Silent_p.S527S|UNC5C_uc003htq.2_Silent_p.S527S	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	508	Cytoplasmic (Potential).				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		TCTCCAACAACGACTGGGTCA	0.527000													61	50					0	0	1	0	0
GSTCD	79807	broad.mit.edu	37	4	106640409	106640409	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:106640409G>A	uc003hxz.3	+	3	691	c.619G>A	c.(619-621)GGA>AGA	p.G207R	GSTCD_uc003hxx.2_Missense_Mutation_p.G207R|GSTCD_uc003hxy.3_Missense_Mutation_p.G120R|GSTCD_uc011cfb.1_Intron|GSTCD_uc010ils.1_Missense_Mutation_p.G207R	NM_001031720	NP_001026890	Q8NEC7	GSTCD_HUMAN	glutathione S-transferase, C-terminal domain	207	GST C-terminal.					cytoplasm	rRNA methyltransferase activity			breast(1)|central_nervous_system(1)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.15e-07)|READ - Rectum adenocarcinoma(30;0.139)		GAAGGCTGATGGAGTTGGGCC	0.458000													45	65					0	0	1	0	0
RRH	10692	broad.mit.edu	37	4	110763752	110763752	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:110763752C>T	uc003hzv.2	+	6	882	c.848C>T	c.(847-849)GCA>GTA	p.A283V		NM_006583	NP_006574	O14718	OPSX_HUMAN	peropsin	283	Helical; Name=7; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00109)		CCACTGTTTGCAAAATCTTCT	0.398000													44	60					0	0	1	0	0
C4orf21	55345	broad.mit.edu	37	4	113527198	113527198	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:113527198G>A	uc003iau.2	-	9	2979	c.2768C>T	c.(2767-2769)CCT>CTT	p.P923L	C4orf21_uc003iaw.2_Missense_Mutation_p.P923L	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	Error:Variant_position_missing_in_Q6ZU11_after_alignment						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		TATTTGTTTAGGAATAACAGC	0.313000													17	35					0	0	1	0	0
TRPC3	7222	broad.mit.edu	37	4	122831408	122831409	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:122831408_122831409GG>AA	uc003ieg.2	-	6	1766_1767	c.1692_1693CC>TT	c.(1690-1695)TTCCTT>TTTTTT	p.L565F	TRPC3_uc010inr.2_Missense_Mutation_p.L437F|TRPC3_uc003ief.2_Missense_Mutation_p.L492F|TRPC3_uc011cgl.1_Missense_Mutation_p.L229F	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	480	Cytoplasmic (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						GTTGCCTGAAGGAAAGCTAGGA	0.465000													37	57					0	0	1	0	0
ELF2	1998	broad.mit.edu	37	4	140058811	140058811	+	Silent	SNP	A	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:140058811A>G	uc003ihp.1	-	2	251	c.45T>C	c.(43-45)CTT>CTC	p.L15L	ELF2_uc003ihq.2_RNA	NM_201999	NP_973728	Q15723	ELF2_HUMAN	E74-like factor 2 (ets domain transcription	15					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2	all_hematologic(180;0.162)					CATTGCTGGAAAGCTCCAAAA	0.333000													71	90					0	0	1	0	0
TTC29	83894	broad.mit.edu	37	4	147830272	147830272	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:147830272G>A	uc003ikw.3	-	5	533	c.306C>T	c.(304-306)TCC>TCT	p.S102S	TTC29_uc010ipc.2_RNA|TTC29_uc003ikx.3_Silent_p.S128S|TTC29_uc010ipd.1_Silent_p.S102S	NM_031956	NP_114162	Q8NA56	TTC29_HUMAN	tetratricopeptide repeat domain 29	102							binding				0	all_hematologic(180;0.151)					GCCAGAAGAGGGACCTGACTC	0.562000													36	58					0	0	1	0	0
PRSS48	345062	broad.mit.edu	37	4	152212270	152212270	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:152212270G>A	uc011cif.1	+	5	652	c.652G>A	c.(652-654)GGT>AGT	p.G218S	PRSS48_uc011cig.1_Missense_Mutation_p.G75S	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	218	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						TCTTCCTTAGGGTGATTCTGG	0.438000													17	24					0	0	1	0	0
F11	2160	broad.mit.edu	37	4	187195349	187195349	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr4:187195349A>T	uc003iza.1	+	5	738	c.405A>T	c.(403-405)GAA>GAT	p.E135D	F11_uc003iyz.2_Missense_Mutation_p.E135D	NM_000128	NP_000119	P03951	FA11_HUMAN	coagulation factor XI precursor	135	Apple 2.				blood coagulation, intrinsic pathway|plasminogen activation|positive regulation of fibrinolysis	extracellular space|plasma membrane	heparin binding|serine-type endopeptidase activity				0		all_cancers(14;6.2e-52)|all_epithelial(14;1.62e-38)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;2.13e-11)|BRCA - Breast invasive adenocarcinoma(30;4.59e-06)|GBM - Glioblastoma multiforme(59;0.000149)|STAD - Stomach adenocarcinoma(60;0.000314)|LUSC - Lung squamous cell carcinoma(40;0.00112)|READ - Rectum adenocarcinoma(43;0.176)	Coagulation Factor IX(DB00100)	GTGCTCAAGAATGCCAAGAAA	0.478000													64	72					0	0	1	0	0
AHRR	57491	broad.mit.edu	37	5	428049	428049	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:428049C>T	uc003jav.2	+	9	946	c.902C>T	c.(901-903)GCG>GTG	p.A301V	AHRR_uc003jaw.2_Missense_Mutation_p.A279V|AHRR_uc010isy.2_Missense_Mutation_p.A129V|AHRR_uc010isz.2_Missense_Mutation_p.A279V|AHRR_uc003jax.2_Missense_Mutation_p.A42V|AHRR_uc003jay.2_Missense_Mutation_p.A139V	NM_020731	NP_065782	A9YTQ3	AHRR_HUMAN	arylhydrocarbon receptor repressor	283					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			breast(2)	2			Epithelial(17;0.0011)|OV - Ovarian serous cystadenocarcinoma(19;0.00353)|all cancers(22;0.00354)|Lung(60;0.0863)			CCCTCCGCAGCGGAGATGAAA	0.617000													14	41					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13864608	13864608	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:13864608C>T	uc003jfd.2	-	28	4536	c.4494G>A	c.(4492-4494)AGG>AGA	p.R1498R		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1498	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGGTGGTTATCCTTTCCCAGT	0.458000									Kartagener_syndrome				46	32					0	0	1	0	0
CDH12	1010	broad.mit.edu	37	5	21760756	21760756	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:21760756C>T	uc010iuc.2	-	10	2002	c.1544G>A	c.(1543-1545)CGA>CAA	p.R515Q	CDH12_uc011cno.1_Missense_Mutation_p.R475Q|CDH12_uc003jgk.2_Missense_Mutation_p.R515Q|uc003jgj.2_Intron	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	515	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						TGAAAGATCTCGGTCTGCAGC	0.408000										HNSCC(59;0.17)			128	82					0	0	1	0	0
CDH9	1007	broad.mit.edu	37	5	26881659	26881659	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:26881659G>A	uc003jgs.1	-	12	2125	c.1956C>T	c.(1954-1956)GTC>GTT	p.V652V	CDH9_uc011cnv.1_Silent_p.V245V	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	652	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						TGTTGTCCCGGACATCGTCTT	0.413000													64	53					0	0	1	0	0
CDH9	1007	broad.mit.edu	37	5	26915863	26915863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:26915863C>T	uc003jgs.1	-	3	567	c.398G>A	c.(397-399)AGA>AAA	p.R133K	CDH9_uc010iug.2_Missense_Mutation_p.R133K	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	133	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						CCCAGTTTTTCTGTCTATAGC	0.368000													87	169					0	0	1	0	0
Unknown	0	broad.mit.edu	37	5	33162691	33162691	+	RNA	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:33162691G>A	uc003jhx.2	+	1		c.426G>A								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		AGGAAGAAGAGATTTTAAACA	0.473000													3	8					0	0	1	0	0
C7	730	broad.mit.edu	37	5	40981622	40981622	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:40981622G>A	uc003jmh.2	+	18	2593	c.2479G>A	c.(2479-2481)GGG>AGG	p.G827R		NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	827	Complement control factor I module 2.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				GAGATGCAGAGGGCAGAGCAT	0.577000													32	27					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41033206	41033206	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:41033206G>A	uc003jmj.3	-	23	2788	c.2298C>T	c.(2296-2298)GTC>GTT	p.V766V	HEATR7B2_uc003jmi.3_Silent_p.V321V	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	766							binding			ovary(6)|central_nervous_system(2)	8						CAGCATCTTGGACAGCAATGC	0.453000													13	59					0	0	1	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64769497	64769497	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:64769497C>T	uc003jtp.2	-	2	818	c.4G>A	c.(4-6)GAA>AAA	p.E2K	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_5'UTR	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	2					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		CACAAAATTTCCATAATTTAG	0.358000													56	28					0	0	1	0	0
MARVELD2	153562	broad.mit.edu	37	5	68715373	68715373	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:68715373A>G	uc003jwq.2	+	2	220	c.161A>G	c.(160-162)CAG>CGG	p.Q54R	MARVELD2_uc010ixf.2_Missense_Mutation_p.Q54R|MARVELD2_uc003jwr.1_Missense_Mutation_p.Q54R|MARVELD2_uc003jws.1_RNA	NM_001038603	NP_001033692	Q8N4S9	MALD2_HUMAN	MARVEL domain containing 2 isoform 1	54	Cytoplasmic (Potential).				sensory perception of sound	integral to membrane|tight junction					0		Lung NSC(167;0.000937)|Prostate(74;0.0187)|Ovarian(174;0.16)		OV - Ovarian serous cystadenocarcinoma(47;7.31e-57)|Epithelial(20;1.05e-52)|all cancers(19;2.63e-48)|Lung(70;0.0183)		CTCCCATTACAGCCACCATTC	0.542000													96	76					0	0	1	0	0
NAIP	4671	broad.mit.edu	37	5	70307183	70307183	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:70307183T>G	uc003kar.1	-	5	1305	c.587A>C	c.(586-588)CAG>CCG	p.Q196P	NAIP_uc003kat.1_Intron|NAIP_uc011crs.1_Missense_Mutation_p.Q196P|NAIP_uc003kas.1_Intron	NM_004536	NP_004527	Q13075	BIRC1_HUMAN	NLR family, apoptosis inhibitory protein isoform	196	BIR 2.				anti-apoptosis|apoptosis|nervous system development	basolateral plasma membrane|cytoplasm	caspase inhibitor activity|metal ion binding|nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(1)	1		Lung NSC(167;4.15e-05)|Prostate(74;0.00996)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;3.04e-60)|Epithelial(20;7.09e-58)|all cancers(19;1.13e-53)|Lung(70;0.0174)		GGAAAAACACTGTACCGTGTC	0.418000													21	57					0	0	1	0	0
S100Z	170591	broad.mit.edu	37	5	76171199	76171199	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:76171199C>T	uc003kep.1	+	3	345	c.15C>T	c.(13-15)CTC>CTT	p.L5L	S100Z_uc003keq.3_Silent_p.L5L	NM_130772	NP_570128	Q8WXG8	S100Z_HUMAN	S100 calcium binding protein Z	5							calcium ion binding			ovary(1)	1		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;8.91e-51)|Epithelial(54;5.43e-45)|all cancers(79;1.82e-40)		CCACCCAGCTCGAGATGGCCA	0.522000													39	15					0	0	1	0	0
CAST	831	broad.mit.edu	37	5	96073567	96073567	+	Silent	SNP	T	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:96073567T>G	uc003klz.1	+	9	627	c.465T>G	c.(463-465)GCT>GCG	p.A155A	CAST_uc003klt.2_Silent_p.A155A|CAST_uc003klu.2_Silent_p.A238A|CAST_uc003klv.2_Silent_p.A216A|CAST_uc003klw.2_Silent_p.A219A|CAST_uc003klx.2_Silent_p.A197A|CAST_uc003kly.2_Silent_p.A216A|CAST_uc011cuo.1_Silent_p.A201A|CAST_uc011cup.1_Silent_p.A106A|CAST_uc011cuq.1_Silent_p.A3A|CAST_uc011cur.1_Silent_p.A141A|CAST_uc011cus.1_Silent_p.A155A|CAST_uc003kma.1_Silent_p.A114A|CAST_uc011cut.1_Silent_p.A83A|CAST_uc003kmb.2_Silent_p.A114A|CAST_uc003kmc.2_Silent_p.A155A|CAST_uc003kmd.2_Silent_p.A133A|CAST_uc003kme.2_Silent_p.A114A|CAST_uc003kmf.2_Silent_p.A133A	NM_001042443	NP_001035908	P20810	ICAL_HUMAN	calpastatin isoform i	155							calcium-dependent cysteine-type endopeptidase inhibitor activity|protein binding			central_nervous_system(3)|ovary(1)|kidney(1)	5		all_cancers(142;5.27e-07)|all_epithelial(76;8.21e-10)|all_lung(232;0.000396)|Lung NSC(167;0.000539)|Ovarian(225;0.024)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;6.85e-15)		GCATGGATGCTGCTTTGGATG	0.328000													39	141					0	0	1	0	0
FNIP1	96459	broad.mit.edu	37	5	131008070	131008070	+	Silent	SNP	T	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:131008070T>C	uc003kvs.1	-	14	2209	c.2067A>G	c.(2065-2067)GTA>GTG	p.V689V	RAPGEF6_uc003kvp.1_Intron|FNIP1_uc003kvt.1_Silent_p.V661V|FNIP1_uc010jdm.1_Silent_p.V644V	NM_133372	NP_588613	Q8TF40	FNIP1_HUMAN	folliculin interacting protein 1 isoform 1	689					regulation of protein phosphorylation	cytoplasm	protein binding			pancreas(1)|skin(1)	2		all_cancers(142;0.00347)|Lung NSC(810;0.106)|all_lung(232;0.123)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0665)		CACATTTGTCTACTGGAACAG	0.413000													127	295					0	0	1	0	0
ACSL6	23305	broad.mit.edu	37	5	131305829	131305829	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:131305829C>T	uc010jdo.1	-	15	1507	c.1424G>A	c.(1423-1425)TGG>TAG	p.W475*	ACSL6_uc003kvv.1_RNA|ACSL6_uc003kvx.1_Nonsense_Mutation_p.W500*|ACSL6_uc003kvy.1_Nonsense_Mutation_p.W500*|ACSL6_uc003kwb.2_Nonsense_Mutation_p.W465*|ACSL6_uc003kvz.1_Nonsense_Mutation_p.W400*|ACSL6_uc003kwa.1_Nonsense_Mutation_p.W486*|ACSL6_uc003kvw.1_Nonsense_Mutation_p.W121*|ACSL6_uc010jdn.1_Nonsense_Mutation_p.W490*	NM_015256	NP_056071	Q9UKU0	ACSL6_HUMAN	acyl-CoA synthetase long-chain family member 6	475	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane|plasma membrane	ATP binding|long-chain fatty acid-CoA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(142;0.107)|Breast(839;0.198)|Lung NSC(810;0.216)|all_lung(232;0.248)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			ACCTGAGGTCCAGTCGCCAGG	0.493000													181	131					0	0	1	0	0
PCDHA3	56145	broad.mit.edu	37	5	140181712	140181712	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:140181712C>T	uc003lhf.2	+	1	930	c.930C>T	c.(928-930)TTC>TTT	p.F310F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.F310F	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	310	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACATAGATTTCGAGGAAAGTA	0.398000													58	93					0	0	1	0	0
PCDHA4	56144	broad.mit.edu	37	5	140187362	140187362	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:140187362G>A	uc003lhi.2	+	1	691	c.590G>A	c.(589-591)CGG>CAG	p.R197Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.R197Q|PCDHA4_uc011daa.1_Missense_Mutation_p.R197Q	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	197	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTTATATTACGGAAATCTTTA	0.463000													42	38					0	0	1	0	0
PCDHA7	56141	broad.mit.edu	37	5	140215547	140215547	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:140215547G>A	uc003lhq.2	+	1	1579	c.1579G>A	c.(1579-1581)GAG>AAG	p.E527K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.E527K	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	527	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACCACGAGGAGCTGGAGCT	0.682000													139	191					0	0	1	0	0
PCDHB6	56130	broad.mit.edu	37	5	140529841	140529841	+	Missense_Mutation	SNP	G	A	A	rs147980996	by1000genomes	TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:140529841G>A	uc003lir.2	+	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I	PCDHB6_uc011dah.1_5'UTR	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	1					calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TAATAGACATGATGCAAACTA	0.398000													30	44					0	0	1	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558576	140558576	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:140558576G>A	uc011dai.1	+	1	1147	c.961G>A	c.(961-963)GAG>AAG	p.E321K	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	321	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGTCAATATCGAGGCGAGAGA	0.398000													80	599					0	0	1	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140720352	140720352	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:140720352C>T	uc003ljk.1	+	1	1999	c.1814C>T	c.(1813-1815)TCT>TTT	p.S605F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Missense_Mutation_p.S605F	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	605	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCTGGCTGTCTTACCACCTG	0.697000													96	116					0	0	1	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140751467	140751467	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:140751467G>A	uc003ljw.1	+	1	1506	c.1506G>A	c.(1504-1506)TCG>TCA	p.S502S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Silent_p.S502S|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	502	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGAGCTGTCGTCCTACGTGT	0.657000													73	89					0	0	1	0	0
PCDH12	51294	broad.mit.edu	37	5	141335364	141335364	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:141335364A>C	uc003llx.2	-	1	3264	c.2053T>G	c.(2053-2055)TTA>GTA	p.L685V		NM_016580	NP_057664	Q9NPG4	PCD12_HUMAN	protocadherin 12 precursor	685	Cadherin 6.|Extracellular (Potential).				neuron recognition	integral to plasma membrane	calcium ion binding			ovary(3)	3		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGGGTCTGTAAGGGGGGGCTT	0.587000													10	15					0	0	1	0	0
NDFIP1	80762	broad.mit.edu	37	5	141511870	141511870	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:141511870C>T	uc003lmi.3	+	3	461	c.245C>T	c.(244-246)ACC>ATC	p.T82I	NDFIP1_uc003lmj.1_Intron	NM_030571	NP_085048	Q9BT67	NFIP1_HUMAN	Nedd4 family interacting protein 1	82	Cytoplasmic (Potential).				cellular iron ion homeostasis|negative regulation of gene expression|negative regulation of protein transport|negative regulation of transporter activity|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of protein ubiquitination	endosome membrane|extracellular region|Golgi membrane|integral to membrane|perinuclear region of cytoplasm	signal transducer activity				0		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGGAGAGGACCAAGGCTGAA	0.438000													78	77					0	0	1	0	0
POU4F3	5459	broad.mit.edu	37	5	145719546	145719546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:145719546G>A	uc003loa.2	+	2	645	c.556G>A	c.(556-558)GAG>AAG	p.E186K		NM_002700	NP_002691	Q15319	PO4F3_HUMAN	POU class 4 homeobox 3	186	POU-specific.				sensory perception of sound|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGACCCGCGCGAGCTGGAAGC	0.682000													42	36					0	0	1	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147040619	147040619	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:147040619C>T	uc003loq.1	-	3	901	c.519G>A	c.(517-519)ATG>ATA	p.M173I	JAKMIP2_uc011dbx.1_Missense_Mutation_p.M131I|JAKMIP2_uc003lor.1_Missense_Mutation_p.M173I|uc003lop.1_3'UTR|JAKMIP2_uc010jgo.1_Missense_Mutation_p.M173I	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	173	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGCTTGGATCATATTGCTCA	0.522000													116	162					0	0	1	0	0
TCOF1	6949	broad.mit.edu	37	5	149759245	149759245	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:149759245G>A	uc003lry.2	+	17	2917	c.2809G>A	c.(2809-2811)GAG>AAG	p.E937K	TCOF1_uc003lrw.2_Missense_Mutation_p.E937K|TCOF1_uc011dch.1_Missense_Mutation_p.E937K|TCOF1_uc003lrz.2_Missense_Mutation_p.E937K|TCOF1_uc003lrx.2_Missense_Mutation_p.E860K|TCOF1_uc003lsa.2_Missense_Mutation_p.E860K|TCOF1_uc011dci.1_Missense_Mutation_p.E366K	NM_001135243	NP_001128715	Q13428	TCOF_HUMAN	Treacher Collins-Franceschetti syndrome 1	937					skeletal system development	nucleolus	protein binding|transporter activity			ovary(2)|large_intestine(1)	3		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GAGCAGCAGCGAGGAATCAGA	0.632000													25	30					0	0	1	0	0
GPX3	2878	broad.mit.edu	37	5	150404944	150404944	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:150404944G>A	uc011dcm.1	+	2	348	c.131G>A	c.(130-132)GGA>GAA	p.G44E	GPX3_uc003ltc.2_RNA|GPX3_uc003ltd.2_RNA	NM_002084	NP_002075	P22352	GPX3_HUMAN	glutathione peroxidase 3 precursor	44					hydrogen peroxide catabolic process|protein homotetramerization|response to lipid hydroperoxide	extracellular space	glutathione peroxidase activity|selenium binding|transcription factor binding				0		Medulloblastoma(196;0.091)|all_hematologic(541;0.207)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Glutathione(DB00143)	TACGAGTACGGAGCCCTCACC	0.458000													61	75					0	0	1	0	0
EBF1	1879	broad.mit.edu	37	5	158140087	158140087	+	Silent	SNP	T	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:158140087T>C	uc010jip.2	-	13	1562	c.1260A>G	c.(1258-1260)CAA>CAG	p.Q420Q	EBF1_uc011ddw.1_Silent_p.Q288Q|EBF1_uc011ddx.1_Silent_p.Q421Q|EBF1_uc003lxl.3_Silent_p.Q389Q	NM_024007	NP_076870	Q9UH73	COE1_HUMAN	early B-cell factor	420					multicellular organismal development	nucleus	DNA binding|metal ion binding		HMGA2/EBF1(2)	soft_tissue(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Acute lymphoblastic leukemia(3;2.99e-06)|all_hematologic(3;0.000772)|Medulloblastoma(196;0.037)|all_neural(177;0.143)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGGCCGGGAGTTGGTTGTGGT	0.552000			T	HMGA2	lipoma								42	71					0	0	1	0	0
ADRA1B	147	broad.mit.edu	37	5	159344183	159344183	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:159344183G>A	uc003lxt.1	+	1	444	c.271G>A	c.(271-273)GAC>AAC	p.D91N		NM_000679	NP_000670	P35368	ADA1B_HUMAN	alpha-1B-adrenergic receptor	91	Helical; Name=2; (By similarity).				cell proliferation|cell-cell signaling|G-protein signaling, coupled to cAMP nucleotide second messenger|intracellular protein kinase cascade	integral to plasma membrane	alpha1-adrenergic receptor activity			lung(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alfuzosin(DB00346)|Bethanidine(DB00217)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Dextroamphetamine(DB01576)|Doxazosin(DB00590)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Guanfacine(DB01018)|Labetalol(DB00598)|Lisdexamfetamine(DB01255)|Methamphetamine(DB01577)|Methotrimeprazine(DB01403)|Methoxamine(DB00723)|Midodrine(DB00211)|Modafinil(DB00745)|Nefazodone(DB01149)|Norepinephrine(DB00368)|Olanzapine(DB00334)|Phendimetrazine(DB01579)|Phenylephrine(DB00388)|Prazosin(DB00457)|Promazine(DB00420)|Propericiazine(DB01608)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)|Trazodone(DB00656)	GGCCATGGCCGACCTGCTGTT	0.607000													93	129					0	0	1	0	0
BNIP1	662	broad.mit.edu	37	5	172590856	172590856	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:172590856C>T	uc003mcj.3	+	6	723	c.619C>T	c.(619-621)CTT>TTT	p.L207F	BNIP1_uc003mci.3_Missense_Mutation_p.L250F|BNIP1_uc003mck.3_Missense_Mutation_p.L216F|BNIP1_uc003mcl.3_Missense_Mutation_p.L173F	NM_001205	NP_001196	Q12981	SEC20_HUMAN	BCL2/adenovirus E1B 19kD interacting protein 1	207	Helical; Anchor for type IV membrane protein; (Potential).				anti-apoptosis|apoptosis|endoplasmic reticulum membrane fusion|endoplasmic reticulum organization|induction of apoptosis|vesicle-mediated transport	integral to endoplasmic reticulum membrane|nuclear envelope|SNARE complex	protein binding			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			TCTCATCTTCCTTGCGCTAGC	0.488000													40	108					0	0	1	0	0
HK3	3101	broad.mit.edu	37	5	176314617	176314617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:176314617G>A	uc003mfa.2	-	11	1527	c.1435C>T	c.(1435-1437)CAC>TAC	p.H479Y	HK3_uc003mez.2_Missense_Mutation_p.H35Y	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	479	Regulatory.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGGCGCCGGTGGGCAGCCAGA	0.657000													61	54					0	0	1	0	0
TBC1D9B	23061	broad.mit.edu	37	5	179320271	179320271	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr5:179320271G>A	uc003mlh.2	-	5	811	c.774C>T	c.(772-774)TTC>TTT	p.F258F	TBC1D9B_uc003mli.2_Silent_p.F258F|TBC1D9B_uc003mlj.2_Silent_p.F258F	NM_198868	NP_942568	Q66K14	TBC9B_HUMAN	TBC1 domain family, member 9B (with GRAM domain)	258						integral to membrane|intracellular	calcium ion binding|Rab GTPase activator activity			breast(1)|skin(1)	2	all_cancers(89;0.000197)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0236)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TGTCCTCCAGGAAGCCCTCGC	0.622000													41	35					0	0	1	0	0
TXNDC5	81567	broad.mit.edu	37	6	7884654	7884654	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:7884654C>T	uc003mxv.2	-	9	1146	c.1114G>A	c.(1114-1116)GCG>ACG	p.A372T	TXNDC5_uc003mxw.2_Missense_Mutation_p.A329T|TXNDC5_uc010jnz.2_Missense_Mutation_p.A264T	NM_030810	NP_110437	Q8NBS9	TXND5_HUMAN	thioredoxin domain containing 5 isoform 1	372	Thioredoxin 3.				anti-apoptosis|cell redox homeostasis|cellular membrane organization|glycerol ether metabolic process|post-Golgi vesicle-mediated transport	endoplasmic reticulum lumen|lysosomal lumen	electron carrier activity|isomerase activity|protein disulfide oxidoreductase activity				0	Ovarian(93;0.0398)					TTGACCCCCGCCAGACCAGGG	0.488000													63	145					0	0	1	0	0
EDN1	1906	broad.mit.edu	37	6	12294300	12294300	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:12294300G>A	uc003nae.3	+	3	694	c.360G>A	c.(358-360)TGG>TGA	p.W120*	EDN1_uc003nad.2_Nonsense_Mutation_p.W120*|EDN1_uc003naf.3_Nonsense_Mutation_p.W119*	NM_001955	NP_001946	P05305	EDN1_HUMAN	endothelin 1 precursor	120	Endothelin-like.				artery smooth muscle contraction|calcium-mediated signaling|leukocyte activation|negative regulation of blood coagulation|negative regulation of cellular protein metabolic process|negative regulation of nitric-oxide synthase biosynthetic process|negative regulation of transcription from RNA polymerase II promoter|nitric oxide transport|peptide hormone secretion|phosphatidylinositol 3-kinase cascade|positive regulation of cardiac muscle hypertrophy|positive regulation of cell size|positive regulation of endothelial cell migration|positive regulation of heart rate|positive regulation of hormone secretion|positive regulation of JUN kinase activity|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of sarcomere organization|positive regulation of smooth muscle cell proliferation|prostaglandin biosynthetic process|protein kinase C deactivation|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	cytoplasm|extracellular space	cytokine activity|endothelin A receptor binding|endothelin B receptor binding|hormone activity			skin(1)	1	all_cancers(95;0.241)|Breast(50;0.0266)|Ovarian(93;0.12)	all_hematologic(90;0.117)				AGAAGTGCTGGAATTTTTGCC	0.453000													109	9					0	0	1	0	0
GFOD1	54438	broad.mit.edu	37	6	13365764	13365764	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:13365764G>A	uc003nat.1	-	2	1049	c.384C>T	c.(382-384)TTC>TTT	p.F128F	GFOD1_uc003nas.1_Silent_p.F25F	NM_018988	NP_061861	Q9NXC2	GFOD1_HUMAN	glucose-fructose oxidoreductase domain	128						extracellular region	binding|oxidoreductase activity			ovary(2)	2	Breast(50;0.0296)|Ovarian(93;0.0454)	all_hematologic(90;0.135)	Epithelial(50;0.0348)|BRCA - Breast invasive adenocarcinoma(129;0.1)|all cancers(50;0.108)			TCATGCGCACGAAAGCCGGCA	0.647000													160	92					0	0	1	0	0
BAT4	7918	broad.mit.edu	37	6	31630263	31630263	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:31630263G>A	uc003nvn.2	-	3	1496	c.851C>T	c.(850-852)CCC>CTC	p.P284L	C6orf47_uc003nvm.1_5'Flank|BAT4_uc003nvo.3_Missense_Mutation_p.P284L|BAT4_uc003nvp.3_Missense_Mutation_p.P284L|BAT4_uc003nvq.2_Missense_Mutation_p.P284L	NM_033177	NP_149417	O95872	GPAN1_HUMAN	HLA-B associated transcript 4	284	G-patch.					intracellular	nucleic acid binding				0						AGTGGGGATGGGATTGGCACG	0.647000													4	150					0	0	1	0	0
C6orf127	340204	broad.mit.edu	37	6	35754898	35754898	+	Splice_Site	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:35754898G>A	uc003old.3	+	2	279	c.222_splice	c.e2+1	p.Q74_splice		NM_001010886	NP_001010886	A2RUU4	CF127_HUMAN	hypothetical protein LOC340204 precursor						digestion|lipid catabolic process	extracellular region	enzyme activator activity			skin(1)	1						TCAAACGCAGGTGGGTATCGC	0.657000													22	70					0	0	1	0	0
TREM1	54210	broad.mit.edu	37	6	41248704	41248704	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:41248704G>A	uc003oqf.1	-	3	658	c.594C>T	c.(592-594)ATC>ATT	p.I198I	TREM1_uc003oqg.1_Intron	NM_018643	NP_061113	Q9NP99	TREM1_HUMAN	triggering receptor expressed on myeloid cells 1	198	Extracellular (Potential).				blood coagulation|humoral immune response|intracellular signal transduction|leukocyte migration	extracellular region|integral to membrane|intracellular|plasma membrane	receptor activity			breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)				Glutathione(DB00143)	TATACCTGATGATATCTGTCA	0.512000													90	6					0	0	1	0	0
CAPN11	11131	broad.mit.edu	37	6	44147820	44147820	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:44147820C>T	uc003owt.1	+	14	1598	c.1560C>T	c.(1558-1560)ATC>ATT	p.I520I	CAPN11_uc011dvn.1_Silent_p.I174I	NM_007058	NP_008989	Q9UMQ6	CAN11_HUMAN	calpain 11	520	Domain III.				proteolysis	acrosomal vesicle	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)|breast(1)	2	all_cancers(18;3.19e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			GGGAATATATCATTATTCCCT	0.542000													30	69					0	0	1	0	0
GPR111	222611	broad.mit.edu	37	6	47649585	47649585	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:47649585C>T	uc010jzj.1	+	6	1291	c.1290C>T	c.(1288-1290)ACC>ACT	p.T430T	GPR111_uc010jzk.1_Silent_p.T362T|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	430	Extracellular (Potential).|GPS.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						AATTGTTTACCTCTTTCTCAA	0.438000													57	71					0	0	1	0	0
TMEM14A	28978	broad.mit.edu	37	6	52546633	52546633	+	Silent	SNP	T	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:52546633T>A	uc003pax.2	+	3	269	c.93T>A	c.(91-93)GCT>GCA	p.A31A		NM_014051	NP_054770	Q9Y6G1	TM14A_HUMAN	transmembrane protein 14A	31	Helical; (Potential).					integral to membrane					0	Lung NSC(77;0.118)					CTTTGATTGCTGGTCTTTTTG	0.408000													44	53					0	0	1	0	0
HCRTR2	3062	broad.mit.edu	37	6	55142315	55142315	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:55142315G>A	uc003pcl.2	+	5	1215	c.900G>A	c.(898-900)AGG>AGA	p.R300R	HCRTR2_uc010jzv.2_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	300	Cytoplasmic (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			GAGCCAGAAGGAAAACAGCCC	0.488000													23	50					0	0	1	0	0
GFRAL	389400	broad.mit.edu	37	6	55198717	55198717	+	Silent	SNP	T	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:55198717T>G	uc003pcm.1	+	3	377	c.291T>G	c.(289-291)CTT>CTG	p.L97L		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	97	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			ACAAACTGCTTGGAAAAAAAT	0.299000													48	55					0	0	1	0	0
COL21A1	81578	broad.mit.edu	37	6	56047331	56047331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:56047331G>A	uc003pcs.2	-	2	318	c.86C>T	c.(85-87)TCA>TTA	p.S29L	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Missense_Mutation_p.S29L|COL21A1_uc003pcu.1_Missense_Mutation_p.S29L	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	29					cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			GTTCTTACTTGATCTTACTTC	0.348000													6	13					0	0	1	0	0
MCART3P	442229	broad.mit.edu	37	6	66498475	66498475	+	RNA	SNP	C	T	T	rs114233858	by1000genomes	TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:66498475C>T	uc011dxw.1	+	1		c.704C>T				NR_026540				Homo sapiens mitochondrial carrier triple repeat 3 pseudogene, mRNA (cDNA clone IMAGE:4821649).												0						GGTCCTCTTTCGACAACAGCT	0.443000													39	54					0	0	1	0	0
BAI3	577	broad.mit.edu	37	6	70071212	70071212	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:70071212C>T	uc003pev.3	+	29	4495	c.4047C>T	c.(4045-4047)TTC>TTT	p.F1349F	BAI3_uc010kak.2_Silent_p.F1349F|BAI3_uc011dxx.1_Silent_p.F555F	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1349	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				ACCCTGAATTCAATATGAATC	0.413000													29	32					0	0	1	0	0
BAI3	577	broad.mit.edu	37	6	70098620	70098620	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:70098620C>T	uc003pev.3	+	32	4854	c.4406C>T	c.(4405-4407)CCA>CTA	p.P1469L	BAI3_uc010kak.2_Missense_Mutation_p.P1469L|BAI3_uc011dxx.1_Missense_Mutation_p.P675L	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1469	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				AACAAGAATCCATGGGACACT	0.468000													12	14					0	0	1	0	0
EPHA7	2045	broad.mit.edu	37	6	93955113	93955113	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:93955113C>A	uc003poe.2	-	16	3026	c.2785G>T	c.(2785-2787)GGA>TGA	p.G929*	EPHA7_uc003pof.2_Nonsense_Mutation_p.G924*|EPHA7_uc011eac.1_Nonsense_Mutation_p.G925*	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	929	Cytoplasmic (Potential).|SAM.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		AGCCATTCTCCAACTGAACAA	0.378000													35	46					2.19962e-31	2.24482e-31	1	1	0
EPHA7	2045	broad.mit.edu	37	6	93967181	93967181	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:93967181C>T	uc003poe.2	-	12	2412	c.2171G>A	c.(2170-2172)AGG>AAG	p.R724K	EPHA7_uc003pof.2_Missense_Mutation_p.R719K|EPHA7_uc011eac.1_Missense_Mutation_p.R720K	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	724	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		GGTACTTACCCTGAGAAATGC	0.323000													14	13					0	0	1	0	0
FHL5	9457	broad.mit.edu	37	6	97063601	97063601	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:97063601G>A	uc003pos.1	+	7	1213	c.808G>A	c.(808-810)GAA>AAA	p.E270K	FHL5_uc003pot.1_Missense_Mutation_p.E270K	NM_020482	NP_065228	Q5TD97	FHL5_HUMAN	activator of cAMP-responsive element modulator	270	LIM zinc-binding 4.					nucleus	zinc ion binding			ovary(2)	2		all_cancers(76;1.57e-07)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00266)|Colorectal(196;0.0341)|Lung NSC(302;0.204)		BRCA - Breast invasive adenocarcinoma(108;0.0948)		CCAGAACAAGGAAATCTTCTG	0.478000													22	44					0	0	1	0	0
SIM1	6492	broad.mit.edu	37	6	100841572	100841572	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:100841572G>A	uc003pqj.3	-	10	1568	c.1361C>T	c.(1360-1362)TCG>TTG	p.S454L	SIM1_uc010kcu.2_Missense_Mutation_p.S454L	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	454	Single-minded C-terminal.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		CACCAGCCTCGAGTGGTCAAG	0.632000													59	71					0	0	1	0	0
BEND3	57673	broad.mit.edu	37	6	107391195	107391195	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:107391195G>A	uc003prs.2	-	5	1850	c.1200C>T	c.(1198-1200)TTC>TTT	p.F400F		NM_001080450	NP_001073919	Q5T5X7	BEND3_HUMAN	BEN domain containing 3	400	BEN 2.									ovary(3)	3						CTTCGTCCAGGAACTCAGTGA	0.607000													82	81					0	0	1	0	0
FOXO3	2309	broad.mit.edu	37	6	108985310	108985310	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:108985310C>T	uc003psk.2	+	3	1590	c.1274C>T	c.(1273-1275)TCC>TTC	p.S425F	FOXO3_uc003psn.2_Intron|FOXO3_uc003psm.2_Missense_Mutation_p.S425F|FOXO3_uc011ean.1_Missense_Mutation_p.S205F|FOXO3_uc010kdj.1_Missense_Mutation_p.S205F	NM_201559	NP_963853	O43524	FOXO3_HUMAN	forkhead box O3A	425					antral ovarian follicle growth|apoptosis|embryo development|glucose homeostasis|induction of apoptosis|initiation of primordial ovarian follicle growth|insulin receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|oocyte maturation|ovulation from ovarian follicle|pattern specification process|phosphatidylinositol-mediated signaling|positive regulation of erythrocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|tissue development	cytosol|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding			central_nervous_system(4)|lung(2)	6		all_cancers(87;1.78e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;3.88e-05)|Colorectal(196;0.0294)|all_lung(197;0.0487)|Lung SC(18;0.152)		Epithelial(106;0.000759)|all cancers(137;0.00121)|BRCA - Breast invasive adenocarcinoma(108;0.00163)|OV - Ovarian serous cystadenocarcinoma(136;0.00718)		GGCCTGGGCTCCCCAACCAGC	0.597000													79	128					0	0	1	0	0
THEMIS	387357	broad.mit.edu	37	6	128134489	128134489	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:128134489C>T	uc003qbi.2	-	5	1616	c.1297G>A	c.(1297-1299)GGT>AGT	p.G433S	THEMIS_uc010kfa.2_Missense_Mutation_p.G336S|THEMIS_uc011ebt.1_Missense_Mutation_p.G433S|THEMIS_uc010kfb.2_Missense_Mutation_p.G398S	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	433	CABIT 2.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						TCTACAAAACCTCCTTCCATG	0.443000													33	38					0	0	1	0	0
PTPRK	5796	broad.mit.edu	37	6	128330378	128330378	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:128330378G>A	uc003qbk.2	-	14	2594	c.2227C>T	c.(2227-2229)CCC>TCC	p.P743S	PTPRK_uc003qbj.2_Missense_Mutation_p.P744S|PTPRK_uc010kfc.2_Missense_Mutation_p.P744S|PTPRK_uc011ebu.1_Missense_Mutation_p.P744S|PTPRK_uc003qbl.1_Missense_Mutation_p.P614S|PTPRK_uc011ebv.1_Missense_Mutation_p.P744S	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	743	Extracellular (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		TGCTTGGCGGGATCTGGGATC	0.363000													19	23					0	0	1	0	0
LAMA2	3908	broad.mit.edu	37	6	129636685	129636686	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:129636685_129636686CC>TT	uc003qbn.2	+	25	3725_3726	c.3620_3621CC>TT	c.(3619-3621)ACC>ATT	p.T1207I	LAMA2_uc003qbo.2_Missense_Mutation_p.T1207I	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1207	Laminin IV type A 2.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		CACACGACCACCAAGGGCATTG	0.465000													50	86					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152771804	152771804	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:152771804C>T	uc010kiw.2	-	27	3953	c.3351G>A	c.(3349-3351)AGG>AGA	p.R1117R	SYNE1_uc003qot.3_Silent_p.R1124R|SYNE1_uc003qou.3_Silent_p.R1117R|SYNE1_uc010kjb.1_Silent_p.R1100R|SYNE1_uc003qow.2_Silent_p.R412R|SYNE1_uc003qox.1_Silent_p.R633R	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1117	HAT 2.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CCATGAGCTTCCTGTAGGTGC	0.517000										HNSCC(10;0.0054)			122	173					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152777179	152777179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:152777179C>T	uc010kiw.2	-	23	3171	c.2569G>A	c.(2569-2571)GAA>AAA	p.E857K	SYNE1_uc003qot.3_Missense_Mutation_p.E864K|SYNE1_uc003qou.3_Missense_Mutation_p.E857K|SYNE1_uc010kjb.1_Missense_Mutation_p.E840K|SYNE1_uc003qow.2_Missense_Mutation_p.E152K|SYNE1_uc003qox.1_Missense_Mutation_p.E373K|SYNE1_uc003qoz.2_Missense_Mutation_p.E289K|SYNE1_uc003qoy.2_Missense_Mutation_p.E424K	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	857	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GCTAACAGTTCCTATAACGAA	0.343000										HNSCC(10;0.0054)			24	24					0	0	1	0	0
TIAM2	26230	broad.mit.edu	37	6	155578089	155578089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:155578089G>A	uc003qqb.2	+	29	6213	c.4940G>A	c.(4939-4941)GGA>GAA	p.G1647E	TIAM2_uc003qqe.2_Missense_Mutation_p.G1647E|TIAM2_uc010kjj.2_Missense_Mutation_p.G1209E|TIAM2_uc003qqf.2_Missense_Mutation_p.G1023E|TIAM2_uc011efl.1_Missense_Mutation_p.G991E|TIAM2_uc003qqg.2_Missense_Mutation_p.G959E|TIAM2_uc003qqh.2_Missense_Mutation_p.G572E|uc003qqi.1_5'Flank	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	1647					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		AGGGACAGAGGAACTTTGCTC	0.532000													18	29					0	0	1	0	0
C6orf118	168090	broad.mit.edu	37	6	165715369	165715369	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:165715369G>A	uc003qum.3	-	2	478	c.442C>T	c.(442-444)CCA>TCA	p.P148S	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	148											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		GCCTCCACTGGAAGGAAATCC	0.632000													70	64					0	0	1	0	0
FOXK1	221937	broad.mit.edu	37	7	4794101	4794101	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:4794101C>T	uc003snc.1	+	3	768	c.758C>T	c.(757-759)TCC>TTC	p.S253F	FOXK1_uc003sna.1_Missense_Mutation_p.S90F|FOXK1_uc003snb.1_Missense_Mutation_p.S253F	NM_001037165	NP_001032242	P85037	FOXK1_HUMAN	forkhead box K1	253					cell differentiation|embryo development|muscle organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			upper_aerodigestive_tract(1)|skin(1)	2		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;7.43e-15)		GTCCCCAACTCCTGCCCAGCC	0.622000													43	109					0	0	1	0	0
DAGLB	221955	broad.mit.edu	37	7	6449868	6449868	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:6449868C>T	uc003sqa.2	-	14	1883	c.1713G>A	c.(1711-1713)CCG>CCA	p.P571P	DAGLB_uc003spy.2_Silent_p.P117P|DAGLB_uc003spz.2_Silent_p.P268P|DAGLB_uc011jwt.1_Silent_p.P385P|DAGLB_uc011jwu.1_Silent_p.P442P|DAGLB_uc003sqb.2_Silent_p.P290P|DAGLB_uc003sqc.2_Silent_p.P290P|DAGLB_uc011jwv.1_RNA|DAGLB_uc003sqd.3_Silent_p.P530P	NM_139179	NP_631918	Q8NCG7	DGLB_HUMAN	diacylglycerol lipase, beta isoform 1	571	Cytoplasmic (Potential).				lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.102)		AGCTGTAGGCCGGGGACCAGC	0.647000													16	21					0	0	1	0	0
RSPH10B2	728194	broad.mit.edu	37	7	6797536	6797536	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:6797536C>T	uc003sqw.1	+	3	499	c.228C>T	c.(226-228)TCC>TCT	p.S76S	RSPH10B2_uc010ktk.1_Silent_p.S76S	NM_173565	NP_775836	B2RC85	R10B2_HUMAN	radial spoke head 10 homolog B	76										ovary(1)|pancreas(1)|skin(1)	3						ACGAAGAGTCCATTCTGACCA	0.433000													143	286					0	0	1	0	0
HDAC9	9734	broad.mit.edu	37	7	18631225	18631225	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:18631225A>T	uc003suh.2	+	4	534	c.493A>T	c.(493-495)AAA>TAA	p.K165*	HDAC9_uc003sue.2_Nonsense_Mutation_p.K165*|HDAC9_uc011jyd.1_Nonsense_Mutation_p.K165*|HDAC9_uc003sui.2_Nonsense_Mutation_p.K168*|HDAC9_uc003suj.2_Nonsense_Mutation_p.K168*|HDAC9_uc011jya.1_Nonsense_Mutation_p.K206*|HDAC9_uc003sua.1_Nonsense_Mutation_p.K187*|HDAC9_uc011jyb.1_Nonsense_Mutation_p.K165*|HDAC9_uc003sud.1_Nonsense_Mutation_p.K165*|HDAC9_uc011jyc.1_Nonsense_Mutation_p.K168*|HDAC9_uc003suf.1_Nonsense_Mutation_p.K196*|HDAC9_uc010kud.1_Nonsense_Mutation_p.K168*|HDAC9_uc011jye.1_Nonsense_Mutation_p.K137*|HDAC9_uc011jyf.1_Nonsense_Mutation_p.K134*|HDAC9_uc010kue.1_5'UTR	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	165					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	AACTAATGGAAAAAATCATTC	0.383000													19	31					0	0	1	0	0
ABCB5	340273	broad.mit.edu	37	7	20739455	20739455	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:20739455G>A	uc003suw.3	+	9	1373	c.827G>A	c.(826-828)GGA>GAA	p.G276E	ABCB5_uc010kuh.2_Missense_Mutation_p.G721E	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	276	Cytoplasmic (Potential).|ABC transmembrane type-1.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						CAGATGTTTGGAAATAATGAT	0.294000													27	21					0	0	1	0	0
HOXA6	3203	broad.mit.edu	37	7	27187355	27187355	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:27187355A>G	uc003syo.1	-	1	14	c.14T>C	c.(13-15)TTT>TCT	p.F5S	uc003syp.1_Intron|HOXA6_uc003syq.1_Intron	NM_024014	NP_076919	P31267	HXA6_HUMAN	homeobox A6	5						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						GGGATTCACAAAATAGGAACT	0.527000											OREG0003757	type=REGULATORY REGION|Gene=HOXA6|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	22	66					0	0	1	0	0
DPY19L2P1	554236	broad.mit.edu	37	7	35130058	35130058	+	Splice_Site	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:35130058C>T	uc003teq.1	-	21	2235	c.1128_splice	c.e21-1	p.R376_splice	DPY19L2P1_uc003tep.1_Splice_Site|DPY19L2P1_uc010kwz.1_Splice_Site					RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						TGTCCGAGCCCTTTAAATTTA	0.259000													23	61					0	0	1	0	0
TXNDC3	51314	broad.mit.edu	37	7	37889885	37889885	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:37889885G>A	uc003tfn.2	+	3	389	c.17G>A	c.(16-18)CGA>CAA	p.R6Q		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	6	Thioredoxin.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						AGCAAAAAACGAGAAGTCCAG	0.338000									Kartagener_syndrome				131	82					0	0	1	0	0
HECW1	23072	broad.mit.edu	37	7	43532712	43532712	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:43532712C>T	uc003tid.1	+	19	3975	c.3370C>T	c.(3370-3372)CGC>TGC	p.R1124C	HECW1_uc011kbi.1_Missense_Mutation_p.R1090C	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	1124					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						GGCATTTCTTCGCCAGCCAAA	0.458000													20	63					0	0	1	0	0
STK17A	9263	broad.mit.edu	37	7	43664264	43664264	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:43664264C>T	uc003tih.2	+	7	1219	c.1068C>T	c.(1066-1068)ACC>ACT	p.T356T	C7orf44_uc003til.2_Intron|C7orf44_uc003tii.2_Intron|C7orf44_uc003tij.2_Intron|C7orf44_uc010kxu.1_Intron|C7orf44_uc003tik.2_Intron	NM_004760	NP_004751	Q9UEE5	ST17A_HUMAN	serine/threonine kinase 17a	356					apoptosis|induction of apoptosis|intracellular protein kinase cascade	nucleus	ATP binding|protein serine/threonine kinase activity			skin(2)	2						ATTCGGATACCGACAAATCAG	0.398000													40	75					0	0	1	0	0
ADCY1	107	broad.mit.edu	37	7	45614655	45614655	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:45614655C>T	uc003tne.3	+	1	531	c.513C>T	c.(511-513)TTC>TTT	p.F171F	ADCY1_uc003tnd.2_5'UTR	NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	171	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	TGGTCACCTTCGTGTCCTATG	0.502000													14	35					0	0	1	0	0
TNS3	64759	broad.mit.edu	37	7	47408077	47408077	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:47408077G>A	uc003tnv.2	-	17	2533	c.2166C>T	c.(2164-2166)GCC>GCT	p.A722A	TNS3_uc003tnw.2_Silent_p.A722A	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	722						focal adhesion	protein binding			ovary(4)	4						GGCTACCGAGGGCGTTCATGT	0.652000													170	113					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47930265	47930265	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:47930265G>A	uc003tny.1	-	16	2550	c.2550C>T	c.(2548-2550)TCC>TCT	p.S850S		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	850	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GTGCCTCAAAGGAAACAGTGG	0.582000													24	79					0	0	1	0	0
CDC14C	168448	broad.mit.edu	37	7	48964972	48964972	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:48964972A>T	uc010kyv.1	+	1	816	c.704A>T	c.(703-705)AAA>ATA	p.K235I		NR_003595				SubName: Full=Putative uncharacterized protein MGC26484;												0						CGTCTGAATAAAAGGATGTAT	0.408000													10	20					0	0	1	0	0
ZNF479	90827	broad.mit.edu	37	7	57187663	57187663	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:57187663G>A	uc010kzo.2	-	5	1730	c.1459C>T	c.(1459-1461)CAT>TAT	p.H487Y		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	487	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TCTCCAGTATGAATTCTCTTA	0.398000													18	64					0	0	1	0	0
AUTS2	26053	broad.mit.edu	37	7	70236594	70236595	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:70236594_70236595CC>TT	uc003tvw.3	+	11	2537_2538	c.1794_1795CC>TT	c.(1792-1797)GGCCCT>GGTTCT	p.P599S	AUTS2_uc003tvx.3_Missense_Mutation_p.P599S|AUTS2_uc011keg.1_Missense_Mutation_p.P51S	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	599										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		CACCCACTGGCCCTTTTGGTTC	0.535000													115	99					0	0	1	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72334559	72334559	+	RNA	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:72334559G>A	uc010lal.1	-	1		c.5097C>T				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						AGAAGATGGGGACTCGCCAGG	0.612000													57	145					0	0	1	0	0
POM121C	100101267	broad.mit.edu	37	7	75070851	75070851	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:75070851G>T	uc010lde.1	-	2	650	c.650C>A	c.(649-651)TCC>TAC	p.S217Y	POM121C_uc003udk.3_5'UTR|POM121C_uc003udl.1_RNA			A8CG34	P121C_HUMAN	Homo sapiens POM121-2 mRNA for nuclear pore membrane protein 121-2, partial cds.	217	Required for targeting to the nucleus and nuclear pore complex.|Pore side (Potential).				mRNA transport|protein transport|transmembrane transport	endoplasmic reticulum membrane|nuclear membrane|nuclear pore	protein binding				0						CCCCGGACAGGAATACTGGGT	0.522000													36	12					1.58521e-26	1.61336e-26	1	1	0
SEMA3E	9723	broad.mit.edu	37	7	83029377	83029377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:83029377C>T	uc003uhy.1	-	11	1799	c.1333G>A	c.(1333-1335)GAT>AAT	p.D445N		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	445	Sema.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				TATTGGCCATCCTCAGCTTCC	0.343000													52	151					0	0	1	0	0
CDK6	1021	broad.mit.edu	37	7	92247472	92247472	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:92247472G>A	uc011khw.1	-	7	1160	c.748C>T	c.(748-750)CCC>TCC	p.P250S	CDK6_uc010lez.2_Missense_Mutation_p.P250S	NM_001259	NP_001250	Q00534	CDK6_HUMAN	cyclin-dependent kinase 6	250	Protein kinase.				cell dedifferentiation|cell division|G1 phase of mitotic cell cycle|gliogenesis|negative regulation of cell cycle|negative regulation of epithelial cell proliferation|negative regulation of osteoblast differentiation|positive regulation of cell-matrix adhesion|positive regulation of fibroblast proliferation|regulation of erythrocyte differentiation|regulation of gene expression|response to virus	cyclin-dependent protein kinase holoenzyme complex|cytosol|nucleus|ruffle	ATP binding|cyclin binding|cyclin-dependent protein kinase activity			central_nervous_system(1)|skin(1)	2	all_cancers(62;8.72e-12)|all_epithelial(64;3.65e-10)|Breast(17;0.000675)|all_lung(186;0.0392)|Lung NSC(181;0.053)|all_neural(327;0.219)|all_hematologic(106;0.237)		STAD - Stomach adenocarcinoma(4;6.16e-07)|GBM - Glioblastoma multiforme(5;1.2e-06)|all cancers(6;3.1e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			GCCTGCCTGGGAAGGGCAACA	0.438000			T	MLLT10	ALL								17	52					0	0	1	0	0
CYP3A7	1551	broad.mit.edu	37	7	99306665	99306666	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:99306665_99306666GG>AA	uc003uru.2	-	11	1350_1351	c.1245_1246CC>TT	c.(1243-1248)CTCCCT>CTTTCT	p.P416S	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	416					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					TACCTTTCAGGGAGGAACTTCT	0.505000													7	58					0	0	1	0	0
MCM7	4176	broad.mit.edu	37	7	99695821	99695821	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:99695821G>A	uc003usw.1	-	7	1323	c.813C>T	c.(811-813)GTC>GTT	p.V271V	MCM7_uc003usv.1_Silent_p.V95V|MCM7_uc003usx.1_Silent_p.V95V	NM_005916	NP_005907	P33993	MCM7_HUMAN	minichromosome maintenance complex component 7	271					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of phosphorylation|response to DNA damage stimulus|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|protein binding				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)				Atorvastatin(DB01076)	CAGTGACGCTGACGTGGTCTC	0.522000													31	63					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100371397	100371397	+	Silent	SNP	C	T	T	rs144009891	by1000genomes	TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:100371397C>T	uc003uwj.2	+	31	5853	c.5688C>T	c.(5686-5688)TCC>TCT	p.S1896S	ZAN_uc003uwk.2_Silent_p.S1896S|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_5'UTR	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	1896	VWFC 3.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			GCACCTGCTCCGTCCACAACA	0.597000													11	37					0	0	1	0	0
C7orf52	375607	broad.mit.edu	37	7	100817857	100817857	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:100817857C>T	uc003uxy.1	-	2	471	c.232G>A	c.(232-234)GAC>AAC	p.D78N	C7orf52_uc003uxz.1_Missense_Mutation_p.D78N|C7orf52_uc003uya.1_Missense_Mutation_p.D78N|C7orf52_uc003uyb.1_Missense_Mutation_p.D78N	NM_198571	NP_940973	Q8N8M0	CG052_HUMAN	hypothetical protein LOC375607	78	N-acetyltransferase.						N-acetyltransferase activity			ovary(1)	1	Lung NSC(181;0.168)|all_lung(186;0.215)					GGAAGGTAGTCCAGGCCGCCG	0.697000													39	111					0	0	1	0	0
PLOD3	8985	broad.mit.edu	37	7	100849577	100849577	+	Silent	SNP	G	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:100849577G>T	uc003uyd.2	-	19	2658	c.2202C>A	c.(2200-2202)TCC>TCA	p.S734S	PLOD3_uc010lhs.2_Silent_p.S299S	NM_001084	NP_001075	O60568	PLOD3_HUMAN	procollagen-lysine, 2-oxoglutarate 5-dioxygenase	734	Fe2OG dioxygenase.				protein modification process	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein binding			ovary(1)|skin(1)	2	Lung NSC(181;0.168)|all_lung(186;0.215)				Succinic acid(DB00139)|Vitamin C(DB00126)	GGTCGACAAAGGACACCATGA	0.652000													71	178					2.3666e-43	2.42186e-43	1	1	0
LAMB4	22798	broad.mit.edu	37	7	107692560	107692560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:107692560G>A	uc010ljo.1	-	26	3982	c.3898C>T	c.(3898-3900)CTT>TTT	p.L1300F	LAMB4_uc003vey.2_Missense_Mutation_p.L1300F|LAMB4_uc010ljp.1_Missense_Mutation_p.L269F	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	1300	Domain II.|Potential.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						CTTGCATTAAGGACACTGGAT	0.388000													80	225					0	0	1	0	0
DOCK4	9732	broad.mit.edu	37	7	111386434	111386434	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:111386434C>T	uc003vfx.2	-	43	4875	c.4606G>A	c.(4606-4608)GAT>AAT	p.D1536N	DOCK4_uc011kml.1_Missense_Mutation_p.D417N|DOCK4_uc011kmm.1_Missense_Mutation_p.D443N|DOCK4_uc003vfw.2_Missense_Mutation_p.D986N|DOCK4_uc003vfy.2_Missense_Mutation_p.D1581N	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	1536	DHR-2.				cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				TTCTCCCCATCTTCAGGGTGA	0.428000													16	15					0	0	1	0	0
MET	4233	broad.mit.edu	37	7	116397781	116397781	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:116397781G>A	uc003vij.2	+	8	2242	c.2055G>A	c.(2053-2055)GGG>GGA	p.G685G	MET_uc010lkh.2_Silent_p.G685G|MET_uc011kne.1_Silent_p.G657G|MET_uc011knf.1_Silent_p.G685G|MET_uc011kng.1_Silent_p.G685G|MET_uc011knh.1_Silent_p.G685G|MET_uc011kni.1_Silent_p.G685G|MET_uc011knj.1_Silent_p.G255G	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	685	Extracellular (Potential).|IPT/TIG 2.				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			TAAACAGTGGGAATTCTAGAC	0.353000			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				30	78					0	0	1	0	0
WNT2	7472	broad.mit.edu	37	7	116955301	116955301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:116955301C>T	uc003viz.2	-	3	712	c.412G>A	c.(412-414)GAT>AAT	p.D138N	WNT2_uc003vja.2_Missense_Mutation_p.D42N	NM_003391	NP_003382	P09544	WNT2_HUMAN	wingless-type MMTV integration site family	138					atrial cardiac muscle tissue morphogenesis|canonical Wnt receptor signaling pathway|cardiac epithelial to mesenchymal transition|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|dorsal/ventral axis specification|iris morphogenesis|labyrinthine layer blood vessel development|lens development in camera-type eye|lung induction|mammary gland epithelium development|neuron differentiation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of fibroblast proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|proteinaceous extracellular matrix	cytokine activity|frizzled binding|frizzled-2 binding|signal transducer activity			breast(2)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	7	all_epithelial(6;2.24e-06)|Lung NSC(10;0.000936)|all_lung(10;0.00109)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		TTCTTTGGATCACAGGAACAG	0.478000													40	97					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117232393	117232393	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:117232393C>T	uc003vjd.2	+	14	2304	c.2172C>T	c.(2170-2172)ATC>ATT	p.I724I	CFTR_uc011knq.1_Silent_p.I130I	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	724	Cytoplasmic (Potential).				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TGAATGGCATCGAAGAGGATT	0.438000									Cystic_Fibrosis				38	24					0	0	1	0	0
PODXL	5420	broad.mit.edu	37	7	131189120	131189120	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:131189120C>T	uc003vqw.3	-	9	1885	c.1627G>A	c.(1627-1629)GAC>AAC	p.D543N	PODXL_uc003vqx.3_Missense_Mutation_p.D511N	NM_001018111	NP_001018121	O00592	PODXL_HUMAN	podocalyxin-like isoform 1 precursor	543	Cytoplasmic (Potential).				cell adhesion|epithelial tube formation|negative regulation of cell-cell adhesion|positive regulation of cell migration|positive regulation of cell-cell adhesion mediated by integrin|regulation of microvillus assembly	actin cytoskeleton|apical plasma membrane|centrosome|filopodium|integral to plasma membrane|lamellipodium|membrane raft|microvillus membrane|nucleolus|ruffle				breast(2)|pancreas(1)	3	Melanoma(18;0.162)					GTCAGGTTGTCCAGAGGGACG	0.592000													74	57					0	0	1	0	0
DGKI	9162	broad.mit.edu	37	7	137257515	137257515	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:137257515G>A	uc003vtt.2	-	18	1832	c.1831C>T	c.(1831-1833)CCC>TCC	p.P611S	DGKI_uc003vtu.2_Missense_Mutation_p.P311S	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	611					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						GCCTACCTGGGTATATTTAAA	0.363000													59	43					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141803141	141803141	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:141803141G>A	uc003vwy.2	+	47	5452	c.5398G>A	c.(5398-5400)GAA>AAA	p.E1800K		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1800	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GGGCTACATTGAAATCTGGGG	0.428000													11	41					0	0	1	0	0
OR2A25	392138	broad.mit.edu	37	7	143771406	143771406	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:143771406C>T	uc011ktx.1	+	1	94	c.94C>T	c.(94-96)CTG>TTG	p.L32L		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	32	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					GCTCTTCTCCCTGTTCTACAT	0.522000													56	117					0	0	1	0	0
EZH2	2146	broad.mit.edu	37	7	148514433	148514433	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:148514433G>A	uc003wfd.1	-	11	1442	c.1276C>T	c.(1276-1278)CCT>TCT	p.P426S	EZH2_uc011kug.1_Missense_Mutation_p.P417S|EZH2_uc003wfb.1_Missense_Mutation_p.P431S|EZH2_uc003wfc.1_Missense_Mutation_p.P387S|EZH2_uc011kuh.1_Missense_Mutation_p.P417S|EZH2_uc011kui.1_3'UTR	NM_004456	NP_004447	Q15910	EZH2_HUMAN	enhancer of zeste 2 isoform a	426					negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	DNA binding|histone-lysine N-methyltransferase activity|protein binding			haematopoietic_and_lymphoid_tissue(180)|skin(2)|large_intestine(1)	183	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00239)			TTCTCAGGAGGTTCAATATTT	0.388000			Mis		DLBCL								28	41					0	0	1	0	0
ZNF786	136051	broad.mit.edu	37	7	148767784	148767784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:148767784G>A	uc003wfh.2	-	4	2217	c.2080C>T	c.(2080-2082)CAT>TAT	p.H694Y	ZNF786_uc011kuk.1_Missense_Mutation_p.H657Y|ZNF786_uc003wfi.2_Missense_Mutation_p.H608Y	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	694	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			AGGCCCTGATGGCTGAGCAGC	0.572000													73	166					0	0	1	0	0
ZNF212	7988	broad.mit.edu	37	7	148950957	148950957	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:148950957C>T	uc003wfp.2	+	5	1035	c.939C>T	c.(937-939)TCC>TCT	p.S313S		NM_012256	NP_036388	Q9UDV6	ZN212_HUMAN	zinc finger protein 212	313					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|identical protein binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00171)			AGGACACTTCCCGCCCCTACG	0.572000													39	87					0	0	1	0	0
ZNF775	285971	broad.mit.edu	37	7	150093982	150093982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:150093982G>A	uc003whf.1	+	3	538	c.413G>A	c.(412-414)GGC>GAC	p.G138D		NM_173680	NP_775951	Q96BV0	ZN775_HUMAN	zinc finger protein 775	138	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(565;0.183)|Melanoma(164;0.226)		OV - Ovarian serous cystadenocarcinoma(82;0.0173)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TACCTCTGCGGCAAGTGCGGC	0.672000													27	22					0	0	1	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417940	150417940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:150417940G>A	uc003whq.2	+	3	935	c.848G>A	c.(847-849)GGG>GAG	p.G283E	GIMAP1_uc003whp.2_Missense_Mutation_p.G291E	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	283	Helical; Anchor for type IV membrane protein; (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CTGCTGCTGGGGGGCGCGCTC	0.692000													11	27					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151970842	151970842	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr7:151970842G>A	uc003wla.2	-	7	1179	c.960C>T	c.(958-960)TTC>TTT	p.F320F		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	320					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		AGATGTGACTGAAATCCTGAA	0.413000			N		medulloblastoma								7	281					0	0	1	0	0
ARHGEF10	9639	broad.mit.edu	37	8	1808276	1808276	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr8:1808276C>T	uc003wpr.2	+	4	585	c.407C>T	c.(406-408)CCC>CTC	p.P136L	ARHGEF10_uc003wpq.1_Missense_Mutation_p.P160L|ARHGEF10_uc003wps.2_Missense_Mutation_p.P136L|ARHGEF10_uc003wpt.2_Missense_Mutation_p.P50L|ARHGEF10_uc010lrd.1_Missense_Mutation_p.P50L|ARHGEF10_uc003wpu.2_Missense_Mutation_p.P50L	NM_014629	NP_055444	O15013	ARHGA_HUMAN	Rho guanine nucleotide exchange factor 10	160					centrosome duplication|myelination in peripheral nervous system|positive regulation of GTP catabolic process|positive regulation of stress fiber assembly|regulation of Rho protein signal transduction|spindle assembly involved in mitosis	centrosome|cytosol|soluble fraction	kinesin binding|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1		Colorectal(14;3.46e-05)|Renal(68;0.000518)|Ovarian(12;0.00409)|Myeloproliferative disorder(644;0.0255)|Hepatocellular(245;0.0834)		COAD - Colon adenocarcinoma(149;1.62e-05)|BRCA - Breast invasive adenocarcinoma(11;1.68e-05)|KIRC - Kidney renal clear cell carcinoma(542;0.00361)|READ - Rectum adenocarcinoma(644;0.0718)		TATGCGGTGCCCTCCAACCTG	0.672000													44	138					0	0	1	0	0
SGK223	157285	broad.mit.edu	37	8	8234497	8234497	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr8:8234497G>A	uc003wsh.3	-	2	1422	c.1422C>T	c.(1420-1422)GTC>GTT	p.V474V		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	474							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						GGGCCGCCATGACTGTGATGG	0.642000													67	43					0	0	1	0	0
MFHAS1	9258	broad.mit.edu	37	8	8749117	8749117	+	Nonsense_Mutation	SNP	A	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr8:8749117A>C	uc003wsj.1	-	1	2015	c.1452T>G	c.(1450-1452)TAT>TAG	p.Y484*		NM_004225	NP_004216	Q9Y4C4	MFHA1_HUMAN	malignant fibrous histiocytoma amplified	484	Roc.										0		Hepatocellular(245;0.217)		COAD - Colon adenocarcinoma(149;0.124)		GGATCACCTCATAACTTTCAT	0.607000													39	102					0	0	1	0	0
MSR1	4481	broad.mit.edu	37	8	16021667	16021667	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr8:16021667C>T	uc003wwz.2	-	5	922	c.724G>A	c.(724-726)GGA>AGA	p.G242R	MSR1_uc010lsu.2_Missense_Mutation_p.G260R|MSR1_uc003wxa.2_Missense_Mutation_p.G242R|MSR1_uc003wxb.2_Missense_Mutation_p.G242R|MSR1_uc011kxz.1_Missense_Mutation_p.G16R	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	242	Potential.|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		TTCACTTCTCCTTTTATTTCC	0.333000													20	40					0	0	1	0	0
PSD3	23362	broad.mit.edu	37	8	18729139	18729139	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr8:18729139T>C	uc003wza.2	-	3	1338	c.1235A>G	c.(1234-1236)GAA>GGA	p.E412G		NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	412					regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		AGCTCACCTTTCCCTGTCTCT	0.443000													96	62					0	0	1	0	0
CDCA2	157313	broad.mit.edu	37	8	25365254	25365254	+	Nonstop_Mutation	SNP	A	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr8:25365254A>T	uc003xep.1	+	15	3551	c.3072A>T	c.(3070-3072)TAA>TAT	p.*1024Y	PPP2R2A_uc003xek.2_Intron|CDCA2_uc011lae.1_3'UTR|CDCA2_uc003xeq.1_Nonstop_Mutation_p.*1009Y|CDCA2_uc003xer.1_Nonstop_Mutation_p.*687Y	NM_152562	NP_689775	Q69YH5	CDCA2_HUMAN	cell division cycle associated 2	1024					cell division|mitosis	cytoplasm|nucleus					0		all_cancers(63;0.0378)|Ovarian(32;0.000878)|all_epithelial(46;0.0162)|Breast(100;0.0164)|Prostate(55;0.191)		UCEC - Uterine corpus endometrioid carcinoma (27;0.022)|Epithelial(17;1.37e-11)|Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0443)		GAAAGCAGTAATTGACATTTC	0.433000													27	62					0	0	1	0	0
ADAM2	2515	broad.mit.edu	37	8	39606961	39606961	+	Silent	SNP	A	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr8:39606961A>G	uc003xnj.2	-	18	1959	c.1884T>C	c.(1882-1884)AAT>AAC	p.N628N	ADAM2_uc003xnk.2_Silent_p.N609N|ADAM2_uc011lck.1_Silent_p.N565N|ADAM2_uc003xnl.2_Silent_p.N472N	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	628	Extracellular (Potential).|EGF-like.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		GCTTTTTGTTATTGCATACCT	0.343000													57	129					0	0	1	0	0
PXDNL	137902	broad.mit.edu	37	8	52387651	52387651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr8:52387651C>T	uc003xqu.3	-	7	676	c.575G>A	c.(574-576)GGG>GAG	p.G192E		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	192	LRRCT.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				TAAAAGCTCCCCCAGCCACAT	0.522000													44	4					0	0	1	0	0
PXDNL	137902	broad.mit.edu	37	8	52567257	52567257	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr8:52567257C>T	uc003xqu.3	-	2	329	c.228G>A	c.(226-228)TTG>TTA	p.L76L		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	76	LRR 2.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				ACAGTGTGTTCAAATTCTTGA	0.368000													26	1					0	0	1	0	0
RUNX1T1	862	broad.mit.edu	37	8	92972505	92972505	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr8:92972505C>T	uc003yfd.2	-	11	1864	c.1780G>A	c.(1780-1782)GGA>AGA	p.G594R	RUNX1T1_uc003yfc.1_Missense_Mutation_p.G567R|RUNX1T1_uc003yfe.1_Missense_Mutation_p.G557R|RUNX1T1_uc010mao.2_Missense_Mutation_p.G567R|RUNX1T1_uc011lgi.1_Missense_Mutation_p.G605R|uc010mam.2_5'Flank|RUNX1T1_uc010man.1_Missense_Mutation_p.G219R|RUNX1T1_uc003yfb.1_Missense_Mutation_p.G557R	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	594					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			GAAGGGGTTCCCGGGGTGGTT	0.592000													18	4					0	0	1	0	0
UBR5	51366	broad.mit.edu	37	8	103297818	103297818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr8:103297818G>A	uc003ykr.1	-	39	5440	c.5407C>T	c.(5407-5409)CCT>TCT	p.P1803S	UBR5_uc003yks.1_Missense_Mutation_p.P1803S	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	1803					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			TTATACTTAGGAATAAGGCCC	0.423000													111	12					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457557	110457557	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr8:110457557G>A	uc003yne.2	+	38	5563	c.5459G>A	c.(5458-5460)GGC>GAC	p.G1820D		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1820	Extracellular (Potential).|IPT/TIG 10.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GGAAGTAAAGGCTTGGCTCTG	0.483000										HNSCC(38;0.096)			78	6					0	0	1	0	0
ADCY8	114	broad.mit.edu	37	8	131859707	131859707	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr8:131859707G>A	uc003ytd.3	-	11	2721	c.2465C>T	c.(2464-2466)TCC>TTC	p.S822F	ADCY8_uc010mds.2_Intron	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	822					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			CACAGCTGAGGAATTGAAAGT	0.348000										HNSCC(32;0.087)			28	3					0	0	1	0	0
KCNQ3	3786	broad.mit.edu	37	8	133141656	133141656	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr8:133141656C>T	uc003ytj.2	-	15	2697	c.2472G>A	c.(2470-2472)TCG>TCA	p.S824S	KCNQ3_uc010mdt.2_Silent_p.S812S|uc003yti.2_5'Flank	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	824					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			TCATCCAGCTCGACCCCCCAT	0.622000													43	8					0	0	1	0	0
SLC45A4	57210	broad.mit.edu	37	8	142227206	142227206	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr8:142227206G>A	uc003ywd.1	-	5	1867	c.1559C>T	c.(1558-1560)ACT>ATT	p.T520I	SLC45A4_uc003ywc.1_Missense_Mutation_p.T520I|SLC45A4_uc010meq.1_Missense_Mutation_p.T518I	NM_001080431	NP_001073900	Q5BKX6	S45A4_HUMAN	solute carrier family 45, member 4	571	Helical; (Potential).				transport	integral to membrane				ovary(2)	2	all_cancers(97;1.52e-15)|all_epithelial(106;2.92e-14)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			AATAGCACCAGTGGCGGCATA	0.562000													84	10					0	0	1	0	0
CNTLN	54875	broad.mit.edu	37	9	17395016	17395016	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:17395016A>G	uc003zmz.2	+	15	2590	c.2564A>G	c.(2563-2565)AAT>AGT	p.N855S	CNTLN_uc003zmy.2_Missense_Mutation_p.N855S|CNTLN_uc010mio.2_Missense_Mutation_p.N534S	NM_017738	NP_060208	Q9NXG0	CNTLN_HUMAN	centlein isoform 1	855						centriole|membrane	two-component sensor activity			pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.14e-10)		GTTATGAGCAATGTGTTTGAG	0.453000													37	58					0	0	1	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18675859	18675859	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:18675859G>A	uc003zne.3	+	10	1217	c.1090G>A	c.(1090-1092)GGA>AGA	p.G364R	ADAMTSL1_uc003znb.2_Intron|ADAMTSL1_uc003znc.3_Missense_Mutation_p.G364R	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	364						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		TAACAGTGACGGATACAAGCA	0.363000													41	68					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	21278511	21278511	+	RNA	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:21278511C>T	uc003zou.1	-	1		c.52G>A								Messenger RNA for human leukocyte (alpha) interferon.																		AGTATGAAGGCCCTCCTGTTA	0.488000													6	11					0	0	1	0	0
TEK	7010	broad.mit.edu	37	9	27158109	27158109	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:27158109C>T	uc003zqi.3	+	2	775	c.333C>T	c.(331-333)ATC>ATT	p.I111I	TEK_uc010mjc.1_Intron|TEK_uc011lnn.1_Silent_p.I111I|TEK_uc011lno.1_Silent_p.I111I|TEK_uc011lnp.1_Intron|TEK_uc003zqj.1_Silent_p.I88I	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	111	Extracellular (Potential).|Ig-like C2-type 1.				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		GAGAGGCAATCAGGATACGAA	0.473000													57	83					0	0	1	0	0
TMEM8B	51754	broad.mit.edu	37	9	35846258	35846258	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:35846258C>T	uc003zym.2	+	9	1392	c.377C>T	c.(376-378)TCC>TTC	p.S126F	TMEM8B_uc003zyk.2_Missense_Mutation_p.S126F|TMEM8B_uc003zyl.2_Missense_Mutation_p.S293F|TMEM8B_uc003zyn.2_Silent_p.V21V|TMEM8B_uc003zyo.2_Missense_Mutation_p.S126F	NM_001042589	NP_001036054	A6NDV4	TMM8B_HUMAN	transmembrane protein 8B isoform a	126	Extracellular (Potential).				cell-matrix adhesion|regulation of growth|regulation of mitotic cell cycle	cell surface|endoplasmic reticulum|integral to membrane|mitochondrion|nucleus|plasma membrane	protein binding			ovary(1)	1						CCTTCAGAGTCCCTGGCCGGC	0.632000													88	77					0	0	1	0	0
FAM75A3	727830	broad.mit.edu	37	9	40702698	40702698	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:40702698G>A	uc010mmj.2	+	4	384	c.355G>A	c.(355-357)GGT>AGT	p.G119S		NM_001083124	NP_001076593	Q5VYP0	F75A3_HUMAN	hypothetical protein LOC727830	119						integral to membrane				ovary(2)|skin(1)	3				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		TCAGCTCTCCGGTCCAGACCC	0.632000													33	63					0	0	1	0	0
FOXD4L5	653427	broad.mit.edu	37	9	70177149	70177149	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:70177149C>A	uc010moc.2	-	1	1667	c.835G>T	c.(835-837)GCC>TCC	p.A279S		NM_001126334	NP_001119806	Q5VV16	FX4L5_HUMAN	forkhead box D4-like 5	279					axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0						GGTGCCCCGGCATAGACGGGG	0.682000													26	82					2.40579e-17	2.43521e-17	1	1	0
GDA	9615	broad.mit.edu	37	9	74828890	74828890	+	Silent	SNP	G	A	A	rs150730275		TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:74828890G>A	uc004aiq.2	+	5	744	c.561G>A	c.(559-561)TCG>TCA	p.S187S	GDA_uc011lse.1_Silent_p.S113S|GDA_uc011lsf.1_Silent_p.S113S|GDA_uc004air.2_Silent_p.S187S|GDA_uc010mow.1_RNA|GDA_uc004ais.2_Silent_p.S145S|GDA_uc004ait.1_Silent_p.S113S	NM_004293	NP_004284	Q9Y2T3	GUAD_HUMAN	guanine deaminase	187					nervous system development|purine base metabolic process|purine nucleotide catabolic process	cytosol	guanine deaminase activity|zinc ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		Myeloproliferative disorder(762;0.0122)		Lung(182;0.0583)		CTGAGGAATCGATCAAGGAAA	0.408000													40	27					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77354349	77354349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:77354349C>T	uc004ajl.1	-	35	5742	c.5504G>A	c.(5503-5505)AGA>AAA	p.R1835K	TRPM6_uc004ajk.1_Missense_Mutation_p.R1830K|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.R786K|TRPM6_uc010mpd.1_Missense_Mutation_p.R668K|TRPM6_uc010mpe.1_Missense_Mutation_p.R382K|TRPM6_uc004ajj.1_Missense_Mutation_p.R791K	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1835	Alpha-type protein kinase.|Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TTGAGCAGCTCTTTGTTGTTG	0.378000													33	40					0	0	1	0	0
PTPDC1	138639	broad.mit.edu	37	9	96860134	96860134	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:96860134G>A	uc004auf.1	+	7	1464	c.1124G>A	c.(1123-1125)AGG>AAG	p.R375K	PTPDC1_uc004aug.1_Missense_Mutation_p.R375K|PTPDC1_uc004auh.1_Missense_Mutation_p.R427K|PTPDC1_uc010mrj.1_Missense_Mutation_p.R429K|PTPDC1_uc010mri.1_Missense_Mutation_p.R427K	NM_177995	NP_818931	A2A3K4	PTPC1_HUMAN	protein tyrosine phosphatase domain containing 1	375							protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1						CTTTGGAAAAGGCGGAATGTT	0.512000													48	61					0	0	1	0	0
FAM22F	54754	broad.mit.edu	37	9	97081905	97081905	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:97081905G>A	uc004aup.1	-	6	1496	c.1475C>T	c.(1474-1476)ACC>ATC	p.T492I		NM_017561	NP_060031	A1L443	FA22F_HUMAN	hypothetical protein LOC54754	492											0		Acute lymphoblastic leukemia(62;0.136)				CTGGGCAAGGGTGAGTCCTTC	0.612000													95	125					0	0	1	0	0
ZNF782	158431	broad.mit.edu	37	9	99581854	99581854	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:99581854T>A	uc004awp.1	-	6	732	c.451A>T	c.(451-453)ATG>TTG	p.M151L	ZNF782_uc011lup.1_Missense_Mutation_p.M19L	NM_001001662	NP_001001662	Q6ZMW2	ZN782_HUMAN	zinc finger protein 782	151					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Acute lymphoblastic leukemia(62;0.0527)				TGTGGGGCCATCAGGCTGAGC	0.438000													50	64					0	0	1	0	0
COL15A1	1306	broad.mit.edu	37	9	101804367	101804367	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:101804367T>A	uc004azb.1	+	24	2758	c.2552T>A	c.(2551-2553)TTT>TAT	p.F851Y		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	851	Triple-helical region 4 (COL4).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				TTACCTGGCTTTCCAGGACTA	0.418000													48	58					0	0	1	0	0
OR13C5	138799	broad.mit.edu	37	9	107360962	107360962	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:107360962G>A	uc011lvp.1	-	1	733	c.733C>T	c.(733-735)CTG>TTG	p.L245L		NM_001004482	NP_001004482	Q8NGS8	O13C5_HUMAN	olfactory receptor, family 13, subfamily C,	245	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4						ACCACAGTCAGACGAGCTGAG	0.423000													58	62					0	0	1	0	0
C9orf84	158401	broad.mit.edu	37	9	114476807	114476807	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:114476807C>T	uc004bfr.2	-	15	2276	c.2141G>A	c.(2140-2142)GGG>GAG	p.G714E	C9orf84_uc011lwt.1_RNA|C9orf84_uc004bfq.2_Missense_Mutation_p.G675E|C9orf84_uc010mug.2_Missense_Mutation_p.G625E	NM_173521	NP_775792	Q5VXU9	CI084_HUMAN	hypothetical protein LOC158401 isoform 1	714										ovary(2)	2						AGGCTTTTTCCCCCTAATAAA	0.368000													24	39					0	0	1	0	0
FKBP15	23307	broad.mit.edu	37	9	115931888	115931888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:115931888G>A	uc004bgs.2	-	26	3219	c.3101C>T	c.(3100-3102)TCC>TTC	p.S1034F	FKBP15_uc004bgr.2_Missense_Mutation_p.S471F|FKBP15_uc011lxc.1_Missense_Mutation_p.S615F|FKBP15_uc011lxd.1_Missense_Mutation_p.S966F	NM_015258	NP_056073	Q5T1M5	FKB15_HUMAN	FK506 binding protein 15, 133kDa	1034					endocytosis|protein folding	axon|early endosome	actin binding			ovary(3)	3						AACTCTGTGGGATGGGATGCA	0.547000													36	47					0	0	1	0	0
WDR31	114987	broad.mit.edu	37	9	116083796	116083797	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:116083796_116083797GG>AA	uc004bhe.2	-	8	884_885	c.632_633CC>TT	c.(631-633)ACC>ATT	p.T211I	WDR31_uc004bhc.2_Missense_Mutation_p.T210I|WDR31_uc004bhd.2_Missense_Mutation_p.T86I|WDR31_uc004bhf.2_RNA	NM_001012361	NP_001012361	Q8NA23	WDR31_HUMAN	WD repeat domain 31 isoform 1	211	WD 4.										0						CCCACCTGAGGGTTTTATCTTC	0.475000													20	33					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	122075522	122075522	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:122075522A>T	uc004bkc.2	-	2	568	c.112T>A	c.(112-114)TTT>ATT	p.F38I	DBC1_uc004bkd.2_Missense_Mutation_p.F38I	NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	38					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						AGCCAATCAAATTCCTTGGAG	0.488000													67	79					0	0	1	0	0
OLFML2A	169611	broad.mit.edu	37	9	127572526	127572526	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:127572526C>T	uc004bov.2	+	8	1907	c.1794C>T	c.(1792-1794)GTC>GTT	p.V598V	OLFML2A_uc004bow.2_Silent_p.V384V	NM_182487	NP_872293	Q68BL7	OLM2A_HUMAN	olfactomedin-like 2A precursor	598	Olfactomedin-like.										0						AAGGCCAGGTCGCCTACGCTT	0.637000													54	56					0	0	1	0	0
SCAI	286205	broad.mit.edu	37	9	127765843	127765843	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:127765843A>G	uc004bpe.2	-	10	949	c.868T>C	c.(868-870)TTC>CTC	p.F290L	SCAI_uc004bpd.2_Missense_Mutation_p.F313L|SCAI_uc010mwu.2_RNA	NM_001144877	NP_001138349	Q8N9R8	SCAI_HUMAN	suppressor of cancer cell invasion isoform 2	290					negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|integral to membrane|nucleus	protein binding|transcription corepressor activity			ovary(2)|breast(2)|central_nervous_system(1)	5						AGTTCACTGAACTTAACCTGC	0.383000													43	38					0	0	1	0	0
ZNF79	7633	broad.mit.edu	37	9	130197476	130197476	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:130197476C>T	uc004bqw.3	+	3	627	c.213C>T	c.(211-213)TCC>TCT	p.S71S	ZNF79_uc011maf.1_Silent_p.S47S|ZNF79_uc011mag.1_Silent_p.S47S	NM_007135	NP_009066	Q15937	ZNF79_HUMAN	zinc finger protein 79	71	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						CAGGAAAGTCCAGGAGCCTTG	0.473000													23	38					0	0	1	0	0
ST6GALNAC4	27090	broad.mit.edu	37	9	130670704	130670704	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:130670704G>A	uc004bss.2	-	6	1152	c.876C>T	c.(874-876)ATC>ATT	p.I292I	ST6GALNAC4_uc004bst.2_Silent_p.I208I	NM_175039	NP_778204	Q9H4F1	SIA7D_HUMAN	sialyltransferase 7D isoform a	292	Lumenal (Potential).				glycolipid metabolic process|protein glycosylation	integral to Golgi membrane|nucleus|soluble fraction	(alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl-galactosaminide 6-alpha-sialyltransferase activity				0						GGGCGAACACGATGGGCCTCT	0.637000													42	69					0	0	1	0	0
RALGDS	5900	broad.mit.edu	37	9	135984192	135984192	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:135984192G>A	uc004cco.2	-	5	666	c.646C>T	c.(646-648)CCG>TCG	p.P216S	RALGDS_uc004ccp.2_RNA|RALGDS_uc004ccq.2_Missense_Mutation_p.P204S|RALGDS_uc004ccr.2_Missense_Mutation_p.P215S|RALGDS_uc011mcv.1_Missense_Mutation_p.P187S|RALGDS_uc004ccs.2_Missense_Mutation_p.P161S|RALGDS_uc011mcw.1_Missense_Mutation_p.P287S|RALGDS_uc004ccv.1_5'UTR|RALGDS_uc004ccu.1_5'UTR	NM_006266	NP_006257	Q12967	GNDS_HUMAN	ral guanine nucleotide dissociation stimulator	216	N-terminal Ras-GEF.				nerve growth factor receptor signaling pathway|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol	Ral guanyl-nucleotide exchange factor activity			large_intestine(1)|lung(1)|ovary(1)	3				OV - Ovarian serous cystadenocarcinoma(145;3.66e-06)|Epithelial(140;2.77e-05)		GGAAAGTCCGGAGGTTGACAG	0.637000			T	CIITA	PMBL|Hodgkin Lymphona|								33	49					0	0	1	0	0
NOTCH1	4851	broad.mit.edu	37	9	139396750	139396750	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:139396750G>A	uc004chz.2	-	28	5358	c.5358C>T	c.(5356-5358)CCC>CCT	p.P1786P		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	1786	Cytoplasmic (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		CCTCGCCGAGGGGCTCCCGCC	0.697000			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			11	21					0	0	1	0	0
DPP7	29952	broad.mit.edu	37	9	140007854	140007854	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:140007854C>T	uc004clh.2	-	5	610	c.580G>A	c.(580-582)GGC>AGC	p.G194S	DPP7_uc011meq.1_Missense_Mutation_p.R217K	NM_013379	NP_037511	Q9UHL4	DPP2_HUMAN	dipeptidyl peptidase 7 preproprotein	194						cytoplasmic membrane-bounded vesicle|extracellular region|lysosome	aminopeptidase activity|protein binding|serine-type peptidase activity				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;4.25e-05)|Epithelial(140;0.000633)		TCGCCGAGGCCTGCCACAGCT	0.667000													39	39					0	0	1	0	0
WDR85	92715	broad.mit.edu	37	9	140450052	140450052	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:140450052G>A	uc004cnk.1	-	9	1156	c.998C>T	c.(997-999)TCG>TTG	p.S333L	WDR85_uc004cnj.1_Missense_Mutation_p.S62L|WDR85_uc004cnl.1_Missense_Mutation_p.S157L|WDR85_uc004cnm.1_Missense_Mutation_p.S94L|WDR85_uc004cnn.1_Missense_Mutation_p.S62L|WDR85_uc004cni.2_RNA	NM_138778	NP_620133	Q9BTV6	WDR85_HUMAN	WD repeat domain 85	333					peptidyl-diphthamide biosynthetic process from peptidyl-histidine						0	all_cancers(76;0.106)			OV - Ovarian serous cystadenocarcinoma(145;0.00029)|Epithelial(140;0.000509)		ATACACCAGCGAGTCGGGCAA	0.597000													47	55					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	140953581	140953581	+	Silent	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr9:140953581C>T	uc004cog.2	+	30	4669	c.4524C>T	c.(4522-4524)ATC>ATT	p.I1508I	CACNA1B_uc011mfd.1_Silent_p.I1038I|CACNA1B_uc004coi.2_Silent_p.I722I	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1508	Helical; Name=S2 of repeat IV; (Potential).|IV.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	GCCTGAACATCGTGTTCACAT	0.517000													27	36					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3240236	3240236	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chrX:3240236G>A	uc004crg.3	-	5	3647	c.3490C>T	c.(3490-3492)CAC>TAC	p.H1164Y		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1164						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TTGTGCCGGTGGCGGAATTTG	0.498000													94	11					0	0	1	0	0
ZRSR2	8233	broad.mit.edu	37	X	15827342	15827342	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chrX:15827342G>A	uc004cxg.3	+	7	503	c.458G>A	c.(457-459)TGG>TAG	p.W153*		NM_005089	NP_005080	Q15696	U2AFM_HUMAN	U2 small nuclear RNA auxiliary factor 1-like 2	153					spliceosome assembly	U12-type spliceosomal complex	nucleotide binding|pre-mRNA 3'-splice site binding|protein binding|zinc ion binding			breast(3)	3	Hepatocellular(33;0.183)					GGTACCACATGGCAAAACCCA	0.383000													73	6					0	0	1	0	0
CXorf23	256643	broad.mit.edu	37	X	19984422	19984422	+	Silent	SNP	A	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chrX:19984422A>G	uc004czp.2	-	2	387	c.387T>C	c.(385-387)TCT>TCC	p.S129S	CXorf23_uc010nfn.2_5'Flank|CXorf23_uc011mjg.1_5'Flank|CXorf23_uc004czo.2_Silent_p.S79S	NM_198279	NP_938020	A2AJT9	CX023_HUMAN	hypothetical protein LOC256643	129						mitochondrion				lung(1)|skin(1)	2						TCTGGGGATAAGAATTCCTTT	0.468000													83	7					0	0	1	0	0
CXorf58	254158	broad.mit.edu	37	X	23945391	23945391	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chrX:23945391G>A	uc004daz.1	+	6	803	c.459G>A	c.(457-459)AGG>AGA	p.R153R	CXorf58_uc011mju.1_Silent_p.R153R	NM_152761	NP_689974	Q96LI9	CX058_HUMAN	hypothetical protein LOC254158	153											0						TGGGGGAAAGGAAATTTCACC	0.348000													53	5					0	0	1	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27998033	27998033	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chrX:27998033G>A	uc004dbx.1	-	1	1534	c.1419C>T	c.(1417-1419)ATC>ATT	p.I473I		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	473	WD 6.									ovary(3)|skin(1)	4						CCATGAACTGGATGATCTGGG	0.502000													15	1					0	0	1	0	0
MAGEB3	4114	broad.mit.edu	37	X	30254981	30254981	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chrX:30254981G>A	uc004dca.1	+	5	1677	c.940G>A	c.(940-942)GAG>AAG	p.E314K		NM_002365	NP_002356	O15480	MAGB3_HUMAN	melanoma antigen family B, 3	314											0						TTTGAGAGATGAGGAAGAAAG	0.507000													28	1					0	0	1	0	0
CXorf22	170063	broad.mit.edu	37	X	35989768	35989768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chrX:35989768C>T	uc004ddj.2	+	12	2095	c.2036C>T	c.(2035-2037)CCC>CTC	p.P679L	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	679										large_intestine(1)|lung(1)|ovary(1)	3						CTAAAGTCACCCTCACTCTCA	0.398000													15	1					0	0	1	0	0
ACRC	93953	broad.mit.edu	37	X	70823916	70823916	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chrX:70823916A>T	uc004eae.2	+	8	1290	c.789A>T	c.(787-789)GAA>GAT	p.E263D	BCYRN1_uc011mpt.1_Intron	NM_052957	NP_443189	Q96QF7	ACRC_HUMAN	ACRC protein	263	Asp/Ser-rich.					nucleus				ovary(3)	3	Renal(35;0.156)					ATGATTCGGAAGCTCCCGACG	0.552000													3	70					0	0	1	0	0
ACRC	93953	broad.mit.edu	37	X	70823918	70823918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chrX:70823918C>T	uc004eae.2	+	8	1292	c.791C>T	c.(790-792)GCT>GTT	p.A264V	BCYRN1_uc011mpt.1_Intron	NM_052957	NP_443189	Q96QF7	ACRC_HUMAN	ACRC protein	264	Asp/Ser-rich.					nucleus				ovary(3)	3	Renal(35;0.156)					GATTCGGAAGCTCCCGACGAC	0.557000													3	68					0	0	1	0	0
XIST	7503	broad.mit.edu	37	X	73071618	73071618	+	RNA	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chrX:73071618G>A	uc004ebm.1	-	1		c.971C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						TAGCACAAACGACTAGCCCTA	0.468000													57	6					0	0	1	0	0
MCART6	401612	broad.mit.edu	37	X	103349572	103349572	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chrX:103349572C>A	uc004elu.2	-	2	550	c.369G>T	c.(367-369)ATG>ATT	p.M123I		NM_001012755	NP_001012773	Q5H9E4	MCAR6_HUMAN	mitochondrial carrier triple repeat 6	123	Helical; Name=3; (Potential).|Solcar 2.				transport	integral to membrane|mitochondrial inner membrane					0						CCACGCCAGACATGAGCCCGG	0.592000													111	10					2.48225e-49	2.54371e-49	1	1	0
CXorf41	139212	broad.mit.edu	37	X	106482179	106482179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chrX:106482179C>T	uc004enc.2	+	6	519	c.457C>T	c.(457-459)CCT>TCT	p.P153S	CXorf41_uc004end.2_Missense_Mutation_p.P153S	NM_173494	NP_775765	Q9NQM4	CX041_HUMAN	hypothetical protein LOC139212	153											0						AAATACAAACCCTTCTGATAT	0.294000													15	2					0	0	1	0	0
AMMECR1	9949	broad.mit.edu	37	X	109560938	109560938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chrX:109560938G>A	uc004eoo.2	-	1	443	c.362C>T	c.(361-363)TCC>TTC	p.S121F	AMMECR1_uc004eop.2_Missense_Mutation_p.S121F|AMMECR1_uc004eoq.2_5'UTR	NM_015365	NP_056180	Q9Y4X0	AMER1_HUMAN	AMMECR1 protein isoform 1	121	Ser-rich.|AMMECR1.										0						CATCTTCCGGGAGCCCGGCGA	0.637000													17	0					0	0	1	0	0
DCX	1641	broad.mit.edu	37	X	110654046	110654046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chrX:110654046C>T	uc004epd.2	-	1	329	c.157G>A	c.(157-159)GAG>AAG	p.E53K	DCX_uc011msv.1_Missense_Mutation_p.E53K|DCX_uc004epe.2_Intron|DCX_uc004epf.2_Intron|DCX_uc004epg.2_Intron	NM_000555	NP_000546	O43602	DCX_HUMAN	doublecortin isoform a	53					axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding			central_nervous_system(2)|lung(1)|skin(1)	4						TCTGTTTCCTCACACATGCCC	0.423000													109	11					0	0	1	0	0
HS6ST2	90161	broad.mit.edu	37	X	131762534	131762534	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chrX:131762534C>T	uc011mve.1	-	4	1951	c.1535G>A	c.(1534-1536)CGA>CAA	p.R512Q	HS6ST2_uc011mvb.1_Missense_Mutation_p.R406Q|HS6ST2_uc011mvc.1_Missense_Mutation_p.R366Q|HS6ST2_uc011mvd.1_Missense_Mutation_p.R552Q|HS6ST2_uc011mva.1_Missense_Mutation_p.R238Q	NM_147175	NP_671704	Q96MM7	H6ST2_HUMAN	heparan sulfate 6-O-sulfotransferase 2 isoform	512	Lumenal (Potential).					integral to membrane	sulfotransferase activity				0	Acute lymphoblastic leukemia(192;0.000127)					CTGACGCTTTCGCCTGGCCTC	0.418000													46	2					0	0	1	0	0
GPC4	2239	broad.mit.edu	37	X	132445401	132445401	+	Silent	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chrX:132445401G>A	uc004exc.1	-	4	974	c.762C>T	c.(760-762)TGC>TGT	p.C254C	GPC4_uc011mvg.1_Silent_p.C184C	NM_001448	NP_001439	O75487	GPC4_HUMAN	glypican 4 precursor	254					anatomical structure morphogenesis|cell proliferation	anchored to membrane|external side of plasma membrane|extracellular space|insoluble fraction|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	Acute lymphoblastic leukemia(192;0.000127)					GGCAGTGGGAGCAGTAGATCA	0.478000													4	134					0	0	1	0	0
SLITRK4	139065	broad.mit.edu	37	X	142716833	142716833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chrX:142716833G>A	uc004fbx.2	-	2	2468	c.2092C>T	c.(2092-2094)CAC>TAC	p.H698Y	SLITRK4_uc004fby.2_Missense_Mutation_p.H698Y	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	698	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CCACAAGTGTGGCTCTTGCTC	0.428000													53	4					0	0	1	0	0
MAGEA6	4105	broad.mit.edu	37	X	151869600	151869600	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chrX:151869600C>T	uc004ffq.1	+	3	484	c.290C>T	c.(289-291)ACC>ATC	p.T97I	MAGEA6_uc004ffr.1_Missense_Mutation_p.T97I|MAGEA2_uc010nto.2_Intron	NM_005363	NP_005354	P43360	MAGA6_HUMAN	melanoma antigen family A, 6	97							protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					GGGCCAAGCACCTTCCCTGAC	0.567000													92	6					0	0	1	0	0
MAGEA6	4105	broad.mit.edu	37	X	151869780	151869780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chrX:151869780C>T	uc004ffq.1	+	3	664	c.470C>T	c.(469-471)TCC>TTC	p.S157F	MAGEA6_uc004ffr.1_Missense_Mutation_p.S157F|MAGEA2_uc010nto.2_Intron	NM_005363	NP_005354	P43360	MAGA6_HUMAN	melanoma antigen family A, 6	157	MAGE.						protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					GCTTCCGATTCCTTGCAGCTG	0.557000													85	7					0	0	1	0	0
OPN1LW	5956	broad.mit.edu	37	X	153416285	153416285	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chrX:153416285G>A	uc004fjz.3	+	2	303	c.270G>A	c.(268-270)TGG>TGA	p.W90*		NM_020061	NP_064445	P04000	OPSR_HUMAN	opsin 1 (cone pigments), long-wave-sensitive	90	Helical; Name=2; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity				0	all_cancers(53;1.83e-16)|all_epithelial(53;2.73e-10)|all_lung(58;6.39e-07)|Lung NSC(58;8.37e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CGCTGAACTGGATCCTGGTGA	0.572000													59	3					0	0	1	0	0
TSEN15	116461	broad.mit.edu	37	1	184041309	184041310	+	Frame_Shift_Del	DEL	GG	-	-			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:184041309_184041310delGG	uc001gqt.3	+	4	451_452	c.372_373delGG	c.(370-375)AAGGCAfs	p.K124fs	TSEN15_uc009wyg.2_RNA|TSEN15_uc001gqu.3_Intron	NM_052965	NP_443197	Q8WW01	SEN15_HUMAN	tRNA splicing endonuclease 15 isoform 1	124_125					mRNA processing|tRNA processing	nucleolus	protein binding				0						AGATCTTGAAGGCATCTCGAAA	0.307													39	117	---	---	---	---					
GPR25	2848	broad.mit.edu	37	1	200842776	200842778	+	In_Frame_Del	DEL	TGC	-	-			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr1:200842776_200842778delTGC	uc001gvn.1	+	1	611_613	c.611_613delTGC	c.(610-615)TTGCTG>TTG	p.204_205LL>L		NM_005298	NP_005289	O00155	GPR25_HUMAN	G protein-coupled receptor 25	204_205	Helical; Name=5; (Potential).|Poly-Leu.					integral to plasma membrane				ovary(1)	1						GGCCTCAGCTTGCTGCTGCTGCT	0.724													9	90	---	---	---	---					
TSG101	7251	broad.mit.edu	37	11	18505466	18505466	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr11:18505466delT	uc001mor.2	-	8	920	c.794delA	c.(793-795)AAGfs	p.K265fs		NM_006292	NP_006283	Q99816	TS101_HUMAN	tumor susceptibility gene 101	265	Potential.				cell division|cellular membrane organization|endosome transport|interspecies interaction between organisms|non-lytic virus budding|protein transport|ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	early endosome|late endosome membrane|multivesicular body|nucleolus|plasma membrane	calcium-dependent protein binding|DNA binding|transcription corepressor activity|ubiquitin binding|ubiquitin protein ligase binding				0						CTGGTGACCCTTTTTCAGGTC	0.438													9	882	---	---	---	---					
PTPN11	5781	broad.mit.edu	37	12	112920001	112920002	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr12:112920001_112920002insT	uc001ttx.2	+	10	1596_1597	c.1216_1217insT	c.(1216-1218)GTTfs	p.V406fs	PTPN11_uc001ttw.1_Frame_Shift_Ins_p.V406fs	NM_002834	NP_002825	Q06124	PTN11_HUMAN	protein tyrosine phosphatase, non-receptor type	406	Tyrosine-protein phosphatase.				axon guidance|cell junction assembly|ephrin receptor signaling pathway|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|interferon-gamma-mediated signaling pathway|leukocyte migration|platelet activation|regulation of cell adhesion mediated by integrin|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|T cell costimulation|type I interferon-mediated signaling pathway	cytosol	non-membrane spanning protein tyrosine phosphatase activity|protein binding			haematopoietic_and_lymphoid_tissue(375)|lung(6)|autonomic_ganglia(2)|soft_tissue(2)|central_nervous_system(2)|large_intestine(1)|skin(1)|ovary(1)|NS(1)|kidney(1)	392						ACTTTCAAAGGTTGGACAAGTA	0.411			Mis		JMML|AML|MDS		Noonan Syndrome		Noonan_syndrome				50	153	---	---	---	---					
GSX1	219409	broad.mit.edu	37	13	28367927	28367929	+	In_Frame_Del	DEL	GGC	-	-			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr13:28367927_28367929delGGC	uc001urr.1	+	2	685_687	c.637_639delGGC	c.(637-639)GGCdel	p.G218del		NM_145657	NP_663632	Q9H4S2	GSX1_HUMAN	GS homeobox 1	218	Poly-Gly.				positive regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Lung SC(185;0.0161)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	GBM - Glioblastoma multiforme(144;0.0402)|all cancers(112;0.0404)|OV - Ovarian serous cystadenocarcinoma(117;0.197)		CAACCATCgtggcggcggcggcg	0.463													7	224	---	---	---	---					
NOVA1	4857	broad.mit.edu	37	14	26917883	26917883	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr14:26917883delC	uc001wpy.2	-	5	1124	c.806delG	c.(805-807)GGAfs	p.G269fs	NOVA1_uc001wpz.2_Frame_Shift_Del_p.G245fs|NOVA1_uc001wqa.2_Frame_Shift_Del_p.G147fs	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	272					locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		ATAAGGAGATCCGGTTGGATT	0.483													79	154	---	---	---	---					
APBA2	321	broad.mit.edu	37	15	29346361	29346363	+	In_Frame_Del	DEL	GAG	-	-			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr15:29346361_29346363delGAG	uc001zck.2	+	3	481_483	c.274_276delGAG	c.(274-276)GAGdel	p.E95del	APBA2_uc010azj.2_In_Frame_Del_p.E95del|APBA2_uc010uat.1_In_Frame_Del_p.E95del|APBA2_uc001zcl.2_In_Frame_Del_p.E95del|APBA2_uc010uas.1_In_Frame_Del_p.E95del	NM_005503	NP_005494	Q99767	APBA2_HUMAN	amyloid beta A4 precursor protein-binding,	95	Poly-Glu.				nervous system development|protein transport		protein binding				0		all_lung(180;1.73e-12)|Breast(32;2.89e-05)|Colorectal(260;0.234)		all cancers(64;7.44e-11)|Epithelial(43;5.74e-10)|GBM - Glioblastoma multiforme(186;0.026)|BRCA - Breast invasive adenocarcinoma(123;0.0286)|Lung(196;0.24)		GGGCCTCCCTGAGGAGGAGGAGG	0.601													7	436	---	---	---	---					
SPG11	80208	broad.mit.edu	37	15	44876328	44876328	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr15:44876328delG	uc001ztx.2	-	30	5581	c.5550delC	c.(5548-5550)AACfs	p.N1850fs	SPG11_uc010bdw.2_Frame_Shift_Del_p.N139fs|SPG11_uc010ueh.1_Frame_Shift_Del_p.N1850fs|SPG11_uc010uei.1_Frame_Shift_Del_p.N1850fs|SPG11_uc001zty.1_Frame_Shift_Del_p.N579fs	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	1850	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		ATTTTGATGTGTTCAGAGCAG	0.413													41	70	---	---	---	---					
MAPK8IP3	23162	broad.mit.edu	37	16	1816383	1816383	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr16:1816383delC	uc002cmk.2	+	22	2909	c.2789delC	c.(2788-2790)ACCfs	p.T930fs	MAPK8IP3_uc002cml.2_Frame_Shift_Del_p.T924fs|MAPK8IP3_uc010uvl.1_Frame_Shift_Del_p.T931fs	NM_015133	NP_055948	Q9UPT6	JIP3_HUMAN	mitogen-activated protein kinase 8 interacting	930					vesicle-mediated transport	Golgi membrane	kinesin binding|MAP-kinase scaffold activity|protein kinase binding			breast(2)|central_nervous_system(1)	3						CCAGCCCCGACCCCGTCCTCT	0.697													35	38	---	---	---	---					
LRRC37A4	55073	broad.mit.edu	37	17	43591984	43591985	+	RNA	INS	-	G	G			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr17:43591984_43591985insG	uc002ije.2	-	1		c.538_539insC								Homo sapiens cDNA FLJ34414 fis, clone HEART2003168, highly similar to Homo sapiens c114 SLIT-like testicular protein (LOC474170), mRNA.												0						GTGGGTCATGCGGAGCGAGTTT	0.411													5	10	---	---	---	---					
RYR1	6261	broad.mit.edu	37	19	38948159	38948160	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:38948159_38948160delTG	uc002oit.2	+	17	1944_1945	c.1814_1815delTG	c.(1813-1815)CTGfs	p.L605fs	RYR1_uc002oiu.2_Frame_Shift_Del_p.L605fs	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	605	Cytoplasmic.|B30.2/SPRY 1.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CTATGCTCCCTGTGTGTGTGTA	0.530													7	719	---	---	---	---					
ZNF347	84671	broad.mit.edu	37	19	53645627	53645627	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr19:53645627delA	uc002qbb.1	-	5	523	c.454delT	c.(454-456)TACfs	p.Y152fs	ZNF347_uc010eql.1_Frame_Shift_Del_p.Y153fs|ZNF347_uc002qbc.1_Frame_Shift_Del_p.Y153fs	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	152					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		ACTCCTTTGTAATTTCCTTCA	0.403													177	119	---	---	---	---					
MYT1	4661	broad.mit.edu	37	20	62839333	62839335	+	In_Frame_Del	DEL	GAG	-	-			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr20:62839333_62839335delGAG	uc002yii.2	+	7	1148_1150	c.784_786delGAG	c.(784-786)GAGdel	p.E273del	MYT1_uc002yih.2_Intron|MYT1_uc002yij.2_5'UTR	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	273	Glu-rich.				cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					agaggaggacgaggaggaggagg	0.271													7	39	---	---	---	---					
IFNGR2	3460	broad.mit.edu	37	21	34799292	34799292	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr21:34799292delT	uc002yrp.3	+	4	1162	c.514delT	c.(514-516)TTTfs	p.F172fs	IFNGR2_uc002yrq.3_Frame_Shift_Del_p.F191fs|IFNGR2_uc010gma.2_Frame_Shift_Del_p.F93fs|IFNGR2_uc002yrr.3_Frame_Shift_Del_p.F93fs	NM_005534	NP_005525	P38484	INGR2_HUMAN	interferon gamma receptor 2 precursor	172	Extracellular (Potential).|Fibronectin type-III 2.				regulation of interferon-gamma-mediated signaling pathway|response to virus	endoplasmic reticulum|integral to plasma membrane	interferon-gamma receptor activity				0					Interferon gamma-1b(DB00033)	CTCCACGGCCTTTTTTTGTTA	0.458													8	444	---	---	---	---					
MKL1	57591	broad.mit.edu	37	22	40816887	40816889	+	In_Frame_Del	DEL	TGC	-	-			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr22:40816887_40816889delTGC	uc003ayv.1	-	7	1050_1052	c.843_845delGCA	c.(841-846)CAGCAC>CAC	p.Q281del	MKL1_uc003ayw.1_In_Frame_Del_p.Q281del|MKL1_uc010gye.1_In_Frame_Del_p.Q281del|MKL1_uc010gyf.1_In_Frame_Del_p.Q231del	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	281	Gln-rich.				positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GTAGTTGTGGTGCTGCTGCTGCT	0.660			T	RBM15	acute megakaryocytic leukemia								7	176	---	---	---	---					
FXR1	8087	broad.mit.edu	37	3	180666228	180666228	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr3:180666228delA	uc003fkq.2	+	5	386	c.364delA	c.(364-366)AAAfs	p.K122fs	FXR1_uc003fkp.2_Frame_Shift_Del_p.K37fs|FXR1_uc003fkr.2_Frame_Shift_Del_p.K122fs|FXR1_uc011bqj.1_Frame_Shift_Del_p.K36fs|FXR1_uc003fks.2_Frame_Shift_Del_p.K36fs|FXR1_uc011bqk.1_Frame_Shift_Del_p.K73fs|FXR1_uc011bql.1_Frame_Shift_Del_p.K109fs	NM_005087	NP_005078	P51114	FXR1_HUMAN	fragile X mental retardation-related protein 1	122					apoptosis|cell differentiation|muscle organ development	nucleolus|polysome				breast(1)	1	all_cancers(143;6.07e-14)|Ovarian(172;0.0212)		Epithelial(37;3.05e-35)|OV - Ovarian serous cystadenocarcinoma(80;2.4e-22)			TAAAACTGTCAAAAAAAATAC	0.333													7	118	---	---	---	---					
SMAP1	60682	broad.mit.edu	37	6	71508369	71508370	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:71508369_71508370insA	uc003pfr.2	+	6	753_754	c.505_506insA	c.(505-507)GAAfs	p.E169fs	SMAP1_uc011dxy.1_RNA|SMAP1_uc003pfs.2_Frame_Shift_Ins_p.E142fs|SMAP1_uc010kao.2_Frame_Shift_Ins_p.E142fs|SMAP1_uc010kap.2_Frame_Shift_Ins_p.E159fs	NM_001044305	NP_001037770	Q8IYB5	SMAP1_HUMAN	stromal membrane-associated GTPase-activating	169					regulation of ARF GTPase activity	plasma membrane	ARF GTPase activator activity|zinc ion binding				0						gaaagaaaaggaaaaaaaaaag	0.233													2	4	---	---	---	---					
ARID1B	57492	broad.mit.edu	37	6	157099427	157099429	+	In_Frame_Del	DEL	CAG	-	-			TCGA-EE-A180-06A-11D-A21A-08	TCGA-EE-A180-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	285dc796-67eb-432e-93e3-e2e3de2ae9b2	d81f1024-ee10-4a21-90b5-10184cbabb63	g.chr6:157099427_157099429delCAG	uc003qqn.2	+	1	342_344	c.190_192delCAG	c.(190-192)CAGdel	p.Q73del	ARID1B_uc003qqo.2_In_Frame_Del_p.Q73del|ARID1B_uc003qqp.2_In_Frame_Del_p.Q73del	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	131	Gln-rich.				chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		gcagcagcaacagcagcagcagc	0.202													3	3	---	---	---	---					
