Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NOC2L	26155	broad.mit.edu	37	1	888564	888564	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:888564G>A	uc001abz.3	-	9	1052	c.993C>T	c.(991-993)CCC>CCT	p.P331P	NOC2L_uc001aby.3_Silent_p.P128P|NOC2L_uc009vjq.2_Silent_p.P331P	NM_015658	NP_056473	Q9Y3T9	NOC2L_HUMAN	nucleolar complex associated 2 homolog	331						nucleolus	protein binding			ovary(1)|skin(1)	2	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.86e-38)|OV - Ovarian serous cystadenocarcinoma(86;6.08e-23)|Colorectal(212;0.000161)|COAD - Colon adenocarcinoma(227;0.000194)|BRCA - Breast invasive adenocarcinoma(365;0.000475)|Kidney(185;0.00231)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0344)|Lung(427;0.2)		CCTTGAGGACGGGGCCAAGGA	0.607													7	24					0	0	0.00307968	0	0
ISG15	9636	broad.mit.edu	37	1	949739	949739	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:949739G>A	uc001acj.3	+	2	486	c.379G>A	c.(379-381)GAG>AAG	p.E127K		NM_005101	NP_005092	P05161	ISG15_HUMAN	ISG15 ubiquitin-like modifier precursor	127	Ubiquitin-like 2.				cell-cell signaling|interspecies interaction between organisms|ISG15-protein conjugation|negative regulation of type I interferon production|response to virus|type I interferon-mediated signaling pathway	cytosol|extracellular space	protein binding				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;4.05e-38)|OV - Ovarian serous cystadenocarcinoma(86;4.54e-23)|Colorectal(212;5.37e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00229)|BRCA - Breast invasive adenocarcinoma(365;0.00238)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.034)|Lung(427;0.199)		GCTGACCTTCGAGGGGAAGCC	0.662													26	93					0	0	0.000720815	0	0
ATAD3C	219293	broad.mit.edu	37	1	1403781	1403781	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:1403781C>T	uc001aft.2	+	12	2102	c.1107C>T	c.(1105-1107)TCC>TCT	p.S369S		NM_001039211	NP_001034300	Q5T2N8	ATD3C_HUMAN	ATPase family, AAA domain containing 3C	369							ATP binding|nucleoside-triphosphatase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		CGTATGCCTCCAAGGACGGGG	0.667													6	67					0	0	0.000442599	0	0
KIAA1751	85452	broad.mit.edu	37	1	1888209	1888209	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:1888209C>T	uc001aim.1	-	17	2022	c.1866G>A	c.(1864-1866)AAG>AAA	p.K622K	KIAA1751_uc009vkz.1_Silent_p.K622K	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	622										pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		CAATGAGCTCCTTGTCGAGGG	0.617													7	14					0	0	0.000274275	0	0
PRDM16	63976	broad.mit.edu	37	1	3328303	3328303	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:3328303C>T	uc001akf.2	+	9	1622	c.1542C>T	c.(1540-1542)TTC>TTT	p.F514F	PRDM16_uc001akc.2_Silent_p.F514F|PRDM16_uc001akd.2_Silent_p.F514F|PRDM16_uc001ake.2_Silent_p.F514F|PRDM16_uc009vlh.2_Silent_p.F215F	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	514	Pro-rich.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		CCCCCGGCTTCCCGGGCATCT	0.682			T	EVI1	MDS|AML								28	125					0	0	0.00327116	0	0
PRDM16	63976	broad.mit.edu	37	1	3342733	3342733	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:3342733C>T	uc001akf.2	+	14	3308	c.3228C>T	c.(3226-3228)ATC>ATT	p.I1076I	PRDM16_uc001akc.2_Silent_p.I1075I|PRDM16_uc001akd.2_Silent_p.I1075I|PRDM16_uc001ake.2_Silent_p.I1076I|PRDM16_uc009vlh.2_Silent_p.I776I	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	1076	Mediates interaction with SKI and regulation of TGF-beta signaling.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		TCTCGGAAATCAGAAACTTTA	0.507			T	EVI1	MDS|AML								12	84					0	0	0.00244969	0	0
MEGF6	1953	broad.mit.edu	37	1	3417791	3417791	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:3417791G>A	uc001akl.2	-	19	2623	c.2396C>T	c.(2395-2397)ACC>ATC	p.T799I	MEGF6_uc001akk.2_Missense_Mutation_p.T694I	NM_001409	NP_001400	O75095	MEGF6_HUMAN	EGF-like-domain, multiple 3 precursor	799	EGF-like 13.					extracellular region	calcium ion binding			large_intestine(1)	1	all_cancers(77;0.00681)|all_epithelial(69;0.00301)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.105)	all_epithelial(116;7.41e-22)|all_lung(118;8.3e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;3.78e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.86e-22)|GBM - Glioblastoma multiforme(42;1.96e-12)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.000448)|BRCA - Breast invasive adenocarcinoma(365;0.000779)|KIRC - Kidney renal clear cell carcinoma(229;0.00645)|STAD - Stomach adenocarcinoma(132;0.00669)|Lung(427;0.213)		GCAGGCTCCGGTCTCAGGGTC	0.697													5	25					0	0	0.00116845	0	0
CAMTA1	23261	broad.mit.edu	37	1	7797056	7797056	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:7797056C>T	uc001aoi.2	+	14	3536	c.3329C>T	c.(3328-3330)TCC>TTC	p.S1110F	CAMTA1_uc010nzv.1_Missense_Mutation_p.S197F|CAMTA1_uc001aok.3_Missense_Mutation_p.S153F|CAMTA1_uc001aoj.2_Missense_Mutation_p.S66F	NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	1110	ANK 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		GACCACTTCTCCTGTACTCCT	0.498													5	38					0	0	0.00198382	0	0
SLC45A1	50651	broad.mit.edu	37	1	8399557	8399557	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:8399557C>T	uc001apb.2	+	7	1779	c.1779C>T	c.(1777-1779)ATC>ATT	p.I593I	SLC45A1_uc001apc.2_Silent_p.I291I	NM_001080397	NP_001073866	Q9Y2W3	S45A1_HUMAN	DNB5	593	Helical; (Potential).				carbohydrate transport	integral to membrane	symporter activity			central_nervous_system(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;1.22e-15)|all_lung(118;0.000147)|Lung NSC(185;0.000251)|Renal(390;0.000469)|Colorectal(325;0.00578)|Breast(348;0.00686)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;3.95e-66)|GBM - Glioblastoma multiforme(8;5.93e-33)|Colorectal(212;2.86e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		CCGCAGCTATCCTGGAGAAGC	0.652													31	39					0	0	0.00209593	0	0
SLC2A7	155184	broad.mit.edu	37	1	9083116	9083116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:9083116C>T	uc009vmo.1	-	3	172	c.172G>A	c.(172-174)GAA>AAA	p.E58K		NM_207420	NP_997303	Q6PXP3	GTR7_HUMAN	intestinal facilitative glucose transporter 7	58	Extracellular (Potential).					integral to membrane|plasma membrane	sugar transmembrane transporter activity				0	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.04e-07)|COAD - Colon adenocarcinoma(227;7.66e-05)|Kidney(185;0.000249)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.00177)|BRCA - Breast invasive adenocarcinoma(304;0.00185)|READ - Rectum adenocarcinoma(331;0.0642)		AAGTAGGTTTCGTTGTAAAAT	0.483													70	93					0	0	0.00361006	0	0
MASP2	10747	broad.mit.edu	37	1	11087255	11087255	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:11087255C>T	uc001aru.2	-	11	1769	c.1748G>A	c.(1747-1749)AGA>AAA	p.R583K		NM_006610	NP_006601	O00187	MASP2_HUMAN	mannan-binding lectin serine protease 2 isoform	583	Peptidase S1.				complement activation, classical pathway|complement activation, lectin pathway|proteolysis	extracellular region	calcium ion binding|calcium-dependent protein binding|serine-type endopeptidase activity			ovary(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.249)	Lung NSC(185;1.04e-05)|all_lung(284;1.31e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.071)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.12e-07)|COAD - Colon adenocarcinoma(227;7.07e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|Kidney(185;0.000722)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|READ - Rectum adenocarcinoma(331;0.0487)|STAD - Stomach adenocarcinoma(313;0.192)		CATTAGATTTCTAGCAAGAAA	0.418													105	79					0	0	0.00361006	0	0
EXOSC10	5394	broad.mit.edu	37	1	11129681	11129682	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:11129681_11129682GG>TT	uc001asa.2	-	22	2472_2473	c.2422_2423CC>AA	c.(2422-2424)CCA>AAA	p.P808K	EXOSC10_uc001asb.2_Missense_Mutation_p.P783K	NM_001001998	NP_001001998	Q01780	EXOSX_HUMAN	exosome component 10 isoform 1	808					CUT catabolic process|histone mRNA catabolic process|maturation of 5.8S rRNA|nuclear polyadenylation-dependent rRNA catabolic process|nuclear retention of unspliced pre-mRNA at the site of transcription|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasm|nuclear exosome (RNase complex)|nucleolus|transcriptionally active chromatin	3'-5' exonuclease activity|exoribonuclease activity|identical protein binding|nucleotide binding|protein serine/threonine kinase activity|RNA binding			upper_aerodigestive_tract(1)	1	Ovarian(185;0.249)	Lung NSC(185;1.74e-05)|all_lung(284;2.05e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.18e-07)|COAD - Colon adenocarcinoma(227;8.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000315)|Kidney(185;0.000832)|KIRC - Kidney renal clear cell carcinoma(229;0.00269)|READ - Rectum adenocarcinoma(331;0.0526)|STAD - Stomach adenocarcinoma(313;0.202)		TGGTGGCTCTGGGTCCTTTGGC	0.48													23	828					0	0	6.4e-05	0	0
MTOR	2475	broad.mit.edu	37	1	11190724	11190724	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:11190724G>A	uc001asd.2	-	39	5596	c.5475C>T	c.(5473-5475)ATC>ATT	p.I1825I	MTOR_uc001asc.2_Silent_p.I30I	NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	1825	FAT.				cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						tggcgttggtgatgttggCCC	0.383													5	23					0	0	0.000602214	0	0
PTCHD2	57540	broad.mit.edu	37	1	11561420	11561420	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:11561420T>C	uc001ash.3	+	2	509	c.371T>C	c.(370-372)CTG>CCG	p.L124P	PTCHD2_uc001asi.1_Missense_Mutation_p.L124P	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	124	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		GCTCTCACTCTGGCGCTTAAG	0.572													8	56					0	0	0.000274275	0	0
PTCHD2	57540	broad.mit.edu	37	1	11579867	11579867	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:11579867C>T	uc001ash.3	+	9	2268	c.2130C>T	c.(2128-2130)ATC>ATT	p.I710I	PTCHD2_uc001asi.1_Silent_p.I710I	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	710	Cytoplasmic (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		GCCATCTCATCGTGCAGCTGC	0.672													29	108					0	0	0.001512	0	0
VPS13D	55187	broad.mit.edu	37	1	12401849	12401849	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:12401849C>T	uc001atv.2	+	41	8780	c.8639C>T	c.(8638-8640)ACC>ATC	p.T2880I	VPS13D_uc001atw.2_Missense_Mutation_p.T2855I|VPS13D_uc001atx.2_Missense_Mutation_p.T2067I	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	2879					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		GAGGTGAAAACCCCCAAGCGC	0.572													29	125					0	0	0.00283554	0	0
AADACL4	343066	broad.mit.edu	37	1	12711266	12711266	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:12711266C>T	uc001auf.2	+	2	293	c.293C>T	c.(292-294)CCC>CTC	p.P98L		NM_001013630	NP_001013652	Q5VUY2	ADCL4_HUMAN	arylacetamide deacetylase-like 4	98	Lumenal (Potential).					integral to membrane	carboxylesterase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000937)|all_lung(284;0.00122)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.81e-07)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0384)		GGGACGATACCCGTGAGGCTG	0.522													17	61					0	0	0.000958276	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12939698	12939698	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:12939698T>G	uc001aun.2	-	4	1175	c.1104A>C	c.(1102-1104)CAA>CAC	p.Q368H		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	368	LRR 5.									ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGGCGTTGACTTGGGAGTCTA	0.507													131	509					0	0	0.00361006	0	0
PRAMEF6	440561	broad.mit.edu	37	1	13001374	13001374	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:13001374C>T	uc001auq.2	-	3	395	c.309G>A	c.(307-309)CTG>CTA	p.L103L	PRAMEF5_uc001aur.2_Intron	NM_001010889	NP_001010889	Q5VXH4	PRAM6_HUMAN	PRAME family member 6	103											0	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CCTGTAAATCCAGCACTTGAA	0.478													48	241					0	0	0.00361006	0	0
PRAMEF17	391004	broad.mit.edu	37	1	13716832	13716832	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:13716832G>A	uc009vnz.1	+	2	349	c.319G>A	c.(319-321)GAT>AAT	p.D107N		NM_001099851	NP_001093321	Q5VTA0	PRA17_HUMAN	PRAME family member 17	107											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;9.86e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|COAD - Colon adenocarcinoma(227;0.000502)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GGATTTGCGGGATGTTGATGG	0.522													22	119					0	0	0.00321405	0	0
PRDM2	7799	broad.mit.edu	37	1	14107394	14107394	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:14107394C>T	uc001avi.2	+	8	3960	c.3104C>T	c.(3103-3105)CCT>CTT	p.P1035L	PRDM2_uc001avg.2_Intron|PRDM2_uc001avh.2_Missense_Mutation_p.P1035L|PRDM2_uc001avj.2_Intron|PRDM2_uc001avk.2_Missense_Mutation_p.P834L|PRDM2_uc009voe.2_Intron|PRDM2_uc009vof.2_Intron	NM_012231	NP_036363	Q13029	PRDM2_HUMAN	retinoblastoma protein-binding zinc finger	1035	SH3-binding (Potential).|Pro-rich.					Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		TCTCCCATTCCTCCCGTGGAG	0.463													20	65					0	0	0.00152264	0	0
EFHD2	79180	broad.mit.edu	37	1	15752446	15752446	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:15752446C>T	uc001awh.2	+	2	465	c.388C>T	c.(388-390)CAC>TAC	p.H130Y		NM_024329	NP_077305	Q96C19	EFHD2_HUMAN	EF-hand domain family, member D2	130	EF-hand 2.					membrane raft					0		Renal(390;0.00145)|Breast(348;0.00173)|Colorectal(325;0.00215)|all_lung(284;0.00366)|Lung NSC(340;0.00395)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)|Hepatocellular(190;0.152)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.59e-07)|COAD - Colon adenocarcinoma(227;3.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000119)|KIRC - Kidney renal clear cell carcinoma(229;0.00251)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0649)		CCCTCAGACCCACCTGGGCCT	0.577													29	86					0	0	0.00106085	0	0
CELA2B	51032	broad.mit.edu	37	1	15808762	15808762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:15808762C>T	uc001awl.2	+	4	255	c.230C>T	c.(229-231)TCC>TTC	p.S77F		NM_015849	NP_056933	P08218	CEL2B_HUMAN	elastase 2B preproprotein	77	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1						TCTCCCAGCTCCTCCGGGATC	0.577													23	54					0	0	0.00395357	0	0
TMEM82	388595	broad.mit.edu	37	1	16069534	16069534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:16069534G>A	uc001axc.2	+	3	319	c.181G>A	c.(181-183)GAA>AAA	p.E61K		NM_001013641	NP_001013663	A0PJX8	TMM82_HUMAN	transmembrane protein 82	61	Leu-rich.					integral to membrane				breast(1)|central_nervous_system(1)	2		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.73e-07)|COAD - Colon adenocarcinoma(227;3.49e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000114)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GCGGCGACCCGAAAAGGAGCG	0.697													23	85					0	0	0.00106085	0	0
NBPF1	55672	broad.mit.edu	37	1	16907242	16907243	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:16907242_16907243GG>TT	uc009vos.1	-	16	2476_2477	c.1588_1589CC>AA	c.(1588-1590)CCA>AAA	p.P530K	NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Intron|NBPF1_uc010oce.1_Missense_Mutation_p.P259K	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	530	NBPF 2.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GAGGCTACCTGGGAGAATGTTT	0.421													17	769					0	0	6.4e-05	0	0
MST1P2	11209	broad.mit.edu	37	1	16974919	16974919	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:16974919C>T	uc010och.1	+	7		c.1379C>T			MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						TGCTCCCGGCCCCGCCAGGGC	0.677													5	75					0	0	0.00198382	0	0
PADI1	29943	broad.mit.edu	37	1	17548886	17548886	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:17548886A>T	uc001bah.1	+	2	286	c.194A>T	c.(193-195)AAG>ATG	p.K65M		NM_013358	NP_037490	Q9ULC6	PADI1_HUMAN	peptidylarginine deiminase type I	65					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity				0		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00054)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00522)|BRCA - Breast invasive adenocarcinoma(304;1.3e-05)|COAD - Colon adenocarcinoma(227;1.31e-05)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(196;0.0069)|READ - Rectum adenocarcinoma(331;0.0681)|Lung(427;0.197)	L-Citrulline(DB00155)	CCCATAGGCAAGGCCCGTTGG	0.542													35	164					0	0	0.00148497	0	0
PADI4	23569	broad.mit.edu	37	1	17685896	17685896	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:17685896C>T	uc001baj.2	+	15	1779	c.1751C>T	c.(1750-1752)CCC>CTC	p.P584L		NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	584					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	GCTTTTTTCCCCAACATGGTG	0.607													23	91					0	0	0.00229938	0	0
IGSF21	84966	broad.mit.edu	37	1	18692034	18692034	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:18692034C>T	uc001bau.1	+	6	1241	c.858C>T	c.(856-858)TTC>TTT	p.F286F	IGSF21_uc001bav.1_Silent_p.F107F	NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	286						extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		CCACCTACTTCCTGCGCCACA	0.622													55	87					0	0	0.00361006	0	0
KIF17	57576	broad.mit.edu	37	1	21036224	21036224	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:21036224C>T	uc001bdr.3	-	4	696	c.578G>A	c.(577-579)TGG>TAG	p.W193*	KIF17_uc001bds.3_Nonsense_Mutation_p.W193*	NM_020816	NP_065867	Q9P2E2	KIF17_HUMAN	kinesin family member 17 isoform a	193	Kinesin-motor.				microtubule-based movement|protein transport	cytoplasm|microtubule	ATP binding			ovary(3)|skin(1)	4		all_lung(284;2.99e-05)|Lung NSC(340;3.26e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|COAD - Colon adenocarcinoma(152;1.43e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000168)|Kidney(64;0.000221)|GBM - Glioblastoma multiforme(114;0.000651)|KIRC - Kidney renal clear cell carcinoma(64;0.0031)|STAD - Stomach adenocarcinoma(196;0.00336)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.209)		ACGGTTCTTCCAGCCAGTCTC	0.582													18	71					0	0	0.00121646	0	0
HP1BP3	50809	broad.mit.edu	37	1	21103228	21103228	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:21103228G>A	uc001bdw.1	-	4	352	c.212C>T	c.(211-213)TCA>TTA	p.S71L	HP1BP3_uc001bdv.1_Missense_Mutation_p.S33L|HP1BP3_uc010odh.1_Missense_Mutation_p.S33L|HP1BP3_uc001bdy.1_Missense_Mutation_p.S71L|HP1BP3_uc001bdz.2_RNA|HP1BP3_uc001bea.2_Missense_Mutation_p.S70L|HP1BP3_uc001beb.2_Missense_Mutation_p.S71L	NM_016287	NP_057371	Q5SSJ5	HP1B3_HUMAN	HP1-BP74	71					nucleosome assembly	nucleosome|nucleus	DNA binding			central_nervous_system(1)|skin(1)	2		all_lung(284;6.55e-06)|Lung NSC(340;6.59e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(152;1.26e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00015)|GBM - Glioblastoma multiforme(114;0.000521)|Kidney(64;0.000529)|STAD - Stomach adenocarcinoma(196;0.00311)|KIRC - Kidney renal clear cell carcinoma(64;0.00687)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.201)		AGATTCCTCTGAACTTATGTC	0.413													31	122					0	0	0.00283554	0	0
ECE1	1889	broad.mit.edu	37	1	21548330	21548330	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:21548330G>A	uc001bek.2	-	18	2121	c.2046C>T	c.(2044-2046)TAC>TAT	p.Y682Y	ECE1_uc001bem.2_Silent_p.Y666Y|ECE1_uc001bej.2_Silent_p.Y670Y|ECE1_uc001bei.2_Silent_p.Y679Y|ECE1_uc010odl.1_Intron	NM_001397	NP_001388	P42892	ECE1_HUMAN	endothelin converting enzyme 1 isoform 1	682	Extracellular (Potential).				bradykinin catabolic process|calcitonin catabolic process|ear development|embryonic digit morphogenesis|endothelin maturation|heart development|positive regulation of receptor recycling|substance P catabolic process	early endosome|external side of plasma membrane|integral to membrane|intrinsic to endosome membrane|membrane fraction|perinuclear region of cytoplasm|plasma membrane|Weibel-Palade body	metal ion binding|metalloendopeptidase activity|protein homodimerization activity			ovary(2)|skin(1)	3		Lung NSC(340;1.14e-05)|all_lung(284;1.23e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00147)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0183)|OV - Ovarian serous cystadenocarcinoma(117;4.83e-27)|COAD - Colon adenocarcinoma(152;1.36e-06)|GBM - Glioblastoma multiforme(114;1.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000162)|STAD - Stomach adenocarcinoma(196;0.00326)|KIRC - Kidney renal clear cell carcinoma(1967;0.00755)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.206)		CCCAGTTCTGGTAAGCCTGGG	0.592													45	189					0	0	0.00361006	0	0
RAP1GAP	5909	broad.mit.edu	37	1	21940136	21940136	+	Silent	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:21940136A>C	uc001bex.2	-	9	717	c.459T>G	c.(457-459)GTT>GTG	p.V153V	RAP1GAP_uc001bev.2_Silent_p.V153V|RAP1GAP_uc001bew.2_Silent_p.V217V|RAP1GAP_uc001bey.2_Silent_p.V153V	NM_002885	NP_002876	P47736	RPGP1_HUMAN	RAP1 GTPase activating protein isoform c	153					regulation of Ras GTPase activity|signal transduction	cytosol|Golgi membrane|membrane fraction	GTPase activator activity|GTPase activity|protein homodimerization activity|Ras GTPase binding			breast(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000861)|all_lung(284;0.000901)|Breast(348;0.012)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;2.3e-26)|COAD - Colon adenocarcinoma(152;1.59e-05)|GBM - Glioblastoma multiforme(114;2.7e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000354)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00862)|READ - Rectum adenocarcinoma(331;0.0625)|Lung(427;0.146)		CCATCTGGACAACATTAGGGA	0.602													29	126					0	0	0.00209593	0	0
CELA3B	23436	broad.mit.edu	37	1	22310198	22310198	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:22310198C>T	uc001bfk.2	+	5	489	c.374C>T	c.(373-375)GCC>GTC	p.A125V	CELA3B_uc009vqf.2_Intron	NM_007352	NP_031378	P08861	CEL3B_HUMAN	elastase 3B, pancreatic preproprotein	125	Peptidase S1.				cholesterol metabolic process|proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1						AATGACATCGCCCTCATCAAG	0.647													17	70					0	0	0.00188189	0	0
ZBTB40	9923	broad.mit.edu	37	1	22835087	22835087	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:22835087T>C	uc001bft.2	+	9	2073	c.1562T>C	c.(1561-1563)GTT>GCT	p.V521A	ZBTB40_uc001bfu.2_Missense_Mutation_p.V521A|ZBTB40_uc009vqi.1_Missense_Mutation_p.V409A|ZBTB40_uc001bfv.1_Missense_Mutation_p.V150A	NM_001083621	NP_001077090	Q9NUA8	ZBT40_HUMAN	zinc finger and BTB domain containing 40	521					bone mineralization|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.86e-26)|Colorectal(126;8.55e-08)|COAD - Colon adenocarcinoma(152;4.1e-06)|GBM - Glioblastoma multiforme(114;1.39e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000712)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0693)|Lung(427;0.216)		ATATCAGCAGTTCTAGAAAAG	0.463													43	81					0	0	0.00361006	0	0
ASAP3	55616	broad.mit.edu	37	1	23768717	23768717	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:23768717G>A	uc001bha.2	-	7	757	c.633C>T	c.(631-633)TTC>TTT	p.F211F	ASAP3_uc010odz.1_Silent_p.F80F|ASAP3_uc010oea.1_Silent_p.F202F|ASAP3_uc001bhb.2_5'Flank	NM_017707	NP_060177	Q8TDY4	ASAP3_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	211					regulation of ARF GTPase activity	cytoplasm	ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GGCTCTGAAGGAAGTCAGGAC	0.557													4	27					0	0	0.000602214	0	0
MYOM3	127294	broad.mit.edu	37	1	24408641	24408641	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:24408641G>A	uc001bin.3	-	18	2293	c.2130C>T	c.(2128-2130)AAC>AAT	p.N710N	MYOM3_uc001bim.3_Silent_p.N367N|MYOM3_uc001bio.2_Silent_p.N710N|MYOM3_uc001bip.1_3'UTR	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	710	Fibronectin type-III 4.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		TCTTCCCGCAGTTCAGGAGGG	0.592													8	26					0	0	0.000274275	0	0
GRHL3	57822	broad.mit.edu	37	1	24663621	24663622	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:24663621_24663622GG>AA	uc001biy.2	+	5	727_728	c.681_682GG>AA	c.(679-684)GAGGAC>GAAAAC	p.D228N	GRHL3_uc001bix.2_Missense_Mutation_p.D223N|GRHL3_uc001biz.2_Missense_Mutation_p.D130N	NM_021180	NP_067003	Q8TE85	GRHL3_HUMAN	sister-of-mammalian grainyhead protein isoform	223					regulation of actin cytoskeleton organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.00171)|all_lung(284;0.00226)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;8.72e-25)|Colorectal(126;4.38e-08)|COAD - Colon adenocarcinoma(152;1.84e-06)|GBM - Glioblastoma multiforme(114;0.000132)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00151)|KIRC - Kidney renal clear cell carcinoma(1967;0.00377)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.143)		CATGTCCAGAGGACTACCCCAG	0.564													11	33					0	0	6.4e-05	0	0
LIN28A	79727	broad.mit.edu	37	1	26751877	26751877	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:26751877G>A	uc001bmj.2	+	3	426	c.312G>A	c.(310-312)CTG>CTA	p.L104L	LIN28A_uc001bmi.1_RNA	NM_024674	NP_078950	Q9H9Z2	LN28A_HUMAN	lin-28 homolog	104	CSD.				miRNA catabolic process|pre-miRNA processing|regulation of transcription, DNA-dependent|RNA 3'-end processing|stem cell maintenance	cytoplasmic mRNA processing body|nucleolus|stress granule	DNA binding|zinc ion binding			central_nervous_system(1)	1						CCAAGGGTCTGGAATCCATCC	0.527													40	145					0	0	0.00148497	0	0
EPB41	2035	broad.mit.edu	37	1	29338416	29338416	+	Missense_Mutation	SNP	C	T	T	rs144897337	byFrequency	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:29338416C>T	uc001brm.1	+	4	833	c.826C>T	c.(826-828)CGT>TGT	p.R276C	EPB41_uc001brg.1_Missense_Mutation_p.R67C|EPB41_uc001brh.1_Missense_Mutation_p.R67C|EPB41_uc001bri.1_Missense_Mutation_p.R241C|EPB41_uc001brj.1_Missense_Mutation_p.R67C|EPB41_uc009vtk.1_Missense_Mutation_p.R241C|EPB41_uc001brk.2_Missense_Mutation_p.R276C|EPB41_uc001brl.1_Missense_Mutation_p.R276C|EPB41_uc009vtl.1_Missense_Mutation_p.R67C|EPB41_uc009vtm.1_5'UTR	NM_203342	NP_976217	P11171	41_HUMAN	erythrocyte membrane protein band 4.1	276	FERM.				blood circulation|cortical actin cytoskeleton organization|positive regulation of protein binding	extrinsic to membrane|Golgi apparatus|nucleus|plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	1-phosphatidylinositol binding|actin binding|spectrin binding|structural constituent of cytoskeleton			ovary(1)	1		Colorectal(325;3.46e-05)|Prostate(1639;0.000244)|Lung NSC(340;0.00328)|all_lung(284;0.00412)|Breast(348;0.00765)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;3.12e-07)|COAD - Colon adenocarcinoma(152;1.21e-05)|STAD - Stomach adenocarcinoma(196;0.00395)|KIRC - Kidney renal clear cell carcinoma(1967;0.0249)|BRCA - Breast invasive adenocarcinoma(304;0.0289)|READ - Rectum adenocarcinoma(331;0.0757)		AAAGCAGGTTCGTGGTAAGTG	0.393													50	84					0	0	0.00361006	0	0
COL16A1	1307	broad.mit.edu	37	1	32164197	32164197	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:32164197G>A	uc001btk.1	-	5	642	c.277C>T	c.(277-279)CCT>TCT	p.P93S	COL16A1_uc001btj.1_5'UTR|COL16A1_uc001btl.3_Missense_Mutation_p.P93S	NM_001856	NP_001847	Q07092	COGA1_HUMAN	alpha 1 type XVI collagen precursor	93	TSP N-terminal.				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			ovary(8)	8		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		AGACCCCGAGGGAATACTCTT	0.572													13	42					0	0	0.00185496	0	0
KIAA1522	57648	broad.mit.edu	37	1	33236042	33236042	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:33236042C>T	uc001bvv.2	+	6	1221	c.1085C>T	c.(1084-1086)TCC>TTC	p.S362F	KIAA1522_uc001bvu.1_Missense_Mutation_p.S421F|KIAA1522_uc010ohm.1_Missense_Mutation_p.S373F|KIAA1522_uc010ohn.1_Intron	NM_020888	NP_065939	Q9P206	K1522_HUMAN	hypothetical protein LOC57648	362	Ser-rich.										0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				CACTCTCAATCCTCCGACACC	0.647													12	16					0	0	0.00185496	0	0
ZSCAN20	7579	broad.mit.edu	37	1	33958864	33958864	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:33958864C>T	uc001bxj.3	+	7	1689	c.1522C>T	c.(1522-1524)CGT>TGT	p.R508C	ZSCAN20_uc009vui.2_Missense_Mutation_p.R507C	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	508					viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				GGAAAAGCTTCGTACCTGTCA	0.562													30	28					0	0	0.00178596	0	0
CSMD2	114784	broad.mit.edu	37	1	34090665	34090665	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:34090665G>A	uc001bxn.1	-	34	5395	c.5366C>T	c.(5365-5367)GCG>GTG	p.A1789V	CSMD2_uc001bxm.1_Missense_Mutation_p.A1829V|CSMD2_uc001bxo.1_Missense_Mutation_p.A702V	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1789	Sushi 10.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ACACGTGGGCGCTGAGACATT	0.642													41	55					0	0	0.00321405	0	0
CSMD2	114784	broad.mit.edu	37	1	34180194	34180194	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:34180194C>T	uc001bxn.1	-	21	3308	c.3279G>A	c.(3277-3279)AGG>AGA	p.R1093R	CSMD2_uc001bxm.1_Silent_p.R1133R	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1093	Sushi 6.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TACCAACACACCTTGGCAGAG	0.597													124	163					0	0	0.00361006	0	0
C1orf94	84970	broad.mit.edu	37	1	34663286	34663286	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:34663286G>A	uc001bxs.3	+	2	610	c.211G>A	c.(211-213)GAC>AAC	p.D71N	C1orf94_uc001bxt.2_Missense_Mutation_p.D261N	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	71							protein binding				0		Myeloproliferative disorder(586;0.0393)				GAATGTGCTGGACAAGACAAG	0.552													18	66					0	0	0.00121646	0	0
C1orf94	84970	broad.mit.edu	37	1	34667830	34667830	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:34667830C>T	uc001bxs.3	+	4	1245	c.846C>T	c.(844-846)TTC>TTT	p.F282F	C1orf94_uc001bxt.2_Silent_p.F472F	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	282							protein binding				0		Myeloproliferative disorder(586;0.0393)				CACCAGTGTTCACGAATCACT	0.547													29	93					0	0	0.00327116	0	0
GJB5	2709	broad.mit.edu	37	1	35223641	35223641	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:35223641C>T	uc001bxu.2	+	2	810	c.710C>T	c.(709-711)TCC>TTC	p.S237F	GJB4_uc001bxv.1_5'Flank	NM_005268	NP_005259	O95377	CXB5_HUMAN	gap junction protein, beta 5, 31.1kDa	237	Cytoplasmic (Potential).				cell communication|epidermis development	connexon complex|integral to membrane				ovary(1)	1		Myeloproliferative disorder(586;0.0393)				ACCACCTCTTCCTGCAAACAA	0.557													35	69					0	0	0.000953801	0	0
GJA4	2701	broad.mit.edu	37	1	35260362	35260362	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:35260362C>T	uc001bya.2	+	2	636	c.548C>T	c.(547-549)CCC>CTC	p.P183L	GJA4_uc009vul.2_Missense_Mutation_p.P259L|GJA4_uc009vum.1_Missense_Mutation_p.P183L	NM_002060	NP_002051	P35212	CXA4_HUMAN	connexin 37	183	Extracellular (Potential).				cell-cell junction assembly	integral to plasma membrane				central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				ACCATGGAGCCCGTGTTTGTG	0.587													17	60					0	0	0.000566183	0	0
DLGAP3	58512	broad.mit.edu	37	1	35370431	35370431	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:35370431T>G	uc001byc.2	-	1	554	c.554A>C	c.(553-555)CAC>CCC	p.H185P		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	185					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				CTCCAGAGAGTGGGACTTGGC	0.667													12	51					0	0	0.00244969	0	0
KIAA0319L	79932	broad.mit.edu	37	1	35972511	35972511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:35972511G>A	uc001byx.2	-	3	626	c.368C>T	c.(367-369)TCC>TTC	p.S123F	KIAA0319L_uc010ohw.1_RNA|KIAA0319L_uc001byz.2_Missense_Mutation_p.S123F|KIAA0319L_uc010ohx.1_Missense_Mutation_p.S123F	NM_024874	NP_079150	Q8IZA0	K319L_HUMAN	dyslexia susceptibility 2-like	123	MANSC.|Extracellular (Potential).					cytoplasmic vesicle part|integral to membrane	protein binding			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GGAATTGGAGGAGTGTGTCCT	0.502													28	101					0	0	0.00106085	0	0
EIF2C1	26523	broad.mit.edu	37	1	36359751	36359751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:36359751C>T	uc001bzl.2	+	6	976	c.763C>T	c.(763-765)CGC>TGC	p.R255C	EIF2C1_uc001bzk.2_Missense_Mutation_p.R180C|EIF2C1_uc009vuy.2_5'Flank	NM_012199	NP_036331	Q9UL18	AGO1_HUMAN	eukaryotic translation initiation factor 2C, 1	255	PAZ.				negative regulation of translation involved in gene silencing by miRNA|nuclear-transcribed mRNA catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|polysome	protein binding|RNA binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TCAGCGCGTTCGCTTCACCAA	0.547													29	32					0	0	0.000878237	0	0
EIF2C3	192669	broad.mit.edu	37	1	36521258	36521258	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:36521258C>T	uc001bzp.2	+	19	2751	c.2495C>T	c.(2494-2496)TCA>TTA	p.S832L	EIF2C3_uc001bzq.2_Missense_Mutation_p.S598L	NM_024852	NP_079128	Q9H9G7	AGO3_HUMAN	eukaryotic translation initiation factor 2C, 3	832					mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				AGTCACGTTTCAGGACAAAGC	0.393													95	68					0	0	0.00361006	0	0
COL8A2	1296	broad.mit.edu	37	1	36564630	36564630	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:36564630C>T	uc001bzv.1	-	2	659	c.652G>A	c.(652-654)GCC>ACC	p.A218T	COL8A2_uc001bzw.1_Missense_Mutation_p.A153T	NM_005202	NP_005193	P25067	CO8A2_HUMAN	collagen, type VIII, alpha 2 precursor	218	Triple-helical region.				angiogenesis|cell-cell adhesion|extracellular matrix organization	basement membrane|collagen	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TGCCCTGGGGCCCCAGGCAGC	0.716													7	21					0	0	0.00198382	0	0
GRIK3	2899	broad.mit.edu	37	1	37270690	37270690	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:37270690G>A	uc001caz.2	-	15	2598	c.2463C>T	c.(2461-2463)ATC>ATT	p.I821I	GRIK3_uc001cba.1_Silent_p.I821I	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	821	Helical; (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	AGATGCCCCCGATCTTCTGGA	0.597													32	104					0	0	0.00375469	0	0
EPHA10	284656	broad.mit.edu	37	1	38185215	38185215	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:38185215T>C	uc009vvi.2	-	15	2713	c.2627A>G	c.(2626-2628)CAC>CGC	p.H876R	EPHA10_uc001cbt.2_RNA|EPHA10_uc009vvh.1_RNA|EPHA10_uc001cbu.2_RNA|EPHA10_uc001cbv.1_RNA	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	876	Cytoplasmic (Potential).|Protein kinase.					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CATTAGTCGGTGCAGAAGGTT	0.627													47	39					0	0	0.00361006	0	0
MACF1	23499	broad.mit.edu	37	1	39549961	39549961	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:39549961G>A	uc010ois.1	+	3	276	c.71G>A	c.(70-72)CGA>CAA	p.R24Q	MACF1_uc010oir.1_Missense_Mutation_p.D20N	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	24	Actin-binding.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CGGAGTGAGCGATCTTACAGG	0.627													20	73					0	0	0.00229938	0	0
SCMH1	22955	broad.mit.edu	37	1	41494270	41494270	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:41494270G>A	uc001cgo.2	-	15	2154	c.1843C>T	c.(1843-1845)CTG>TTG	p.L615L	SCMH1_uc010ojr.1_Silent_p.L435L|SCMH1_uc001cgp.2_Silent_p.L554L|SCMH1_uc001cgr.2_Silent_p.L532L|SCMH1_uc001cgs.2_Silent_p.L603L|SCMH1_uc001cgt.2_Silent_p.L532L|SCMH1_uc001cgq.2_Silent_p.L546L|SCMH1_uc010ojs.1_RNA	NM_001031694	NP_001026864	Q96GD3	SCMH1_HUMAN	sex comb on midleg 1 isoform 1	615	SAM.				anatomical structure morphogenesis|gene silencing|multicellular organismal development|negative regulation of transcription, DNA-dependent		DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)|Breast(333;0.162)	Myeloproliferative disorder(586;0.0393)				TTGCGAAACAGGTCAGCGTGG	0.587													32	109					0	0	0.00327116	0	0
HIVEP3	59269	broad.mit.edu	37	1	42050037	42050037	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:42050037G>A	uc001cgz.3	-	4	1645	c.432C>T	c.(430-432)CTC>CTT	p.L144L	HIVEP3_uc001cha.3_Silent_p.L144L|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	144					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GGGAAGGAAGGAGCTGGCTCT	0.612													72	75					0	0	0.00361006	0	0
FAM183A	440585	broad.mit.edu	37	1	43621918	43621918	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:43621918G>A	uc009vwo.2	+	4	368	c.339G>A	c.(337-339)AGG>AGA	p.R113R		NM_001101376	NP_001094846	A6NL82	F183A_HUMAN	hCG23177	113										ovary(3)	3						ATCACTTCAGGGTCTGCAGTG	0.512													20	99					0	0	0.00332997	0	0
C1orf210	149466	broad.mit.edu	37	1	43748510	43748510	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:43748510C>T	uc001cit.3	-	3	522	c.288G>A	c.(286-288)CAG>CAA	p.Q96Q		NM_182517	NP_872323	Q8IVY1	CA210_HUMAN	hypothetical protein LOC149466	96	Cytoplasmic (Potential).					integral to membrane					0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				CAGTCCCAGGCTGAATGTAAT	0.602													25	72					0	0	0.000878237	0	0
KIAA0467	23334	broad.mit.edu	37	1	43908610	43908610	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:43908610C>T	uc001cjk.1	+	44	6037	c.5575C>T	c.(5575-5577)CCC>TCC	p.P1859S		NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	2758						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GGGTCCTCTTCCCCTGGACAC	0.642													33	31					0	0	0.0024448	0	0
KLF17	128209	broad.mit.edu	37	1	44595390	44595390	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:44595390G>A	uc001clp.2	+	2	505	c.447G>A	c.(445-447)GGG>GGA	p.G149G	KLF17_uc009vxf.1_Silent_p.G112G	NM_173484	NP_775755	Q5JT82	KLF17_HUMAN	zinc finger protein 393	149					regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					CCTTCGGTGGGAATCTAAGGA	0.567													19	20					0	0	0.00074312	0	0
RNF220	55182	broad.mit.edu	37	1	44878091	44878091	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:44878091C>T	uc001clv.1	+	2	682	c.322C>T	c.(322-324)CCA>TCA	p.P108S	RNF220_uc001clw.1_Missense_Mutation_p.P108S	NM_018150	NP_060620	Q5VTB9	RN220_HUMAN	ring finger protein 220	108					protein autoubiquitination	cytoplasm	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						AGATTGCACCCCAATCAGTAT	0.567													45	119					0	0	0.0025221	0	0
TESK2	10420	broad.mit.edu	37	1	45820995	45820995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:45820995G>A	uc001cns.1	-	5	923	c.520C>T	c.(520-522)CAT>TAT	p.H174Y	TESK2_uc009vxr.1_Missense_Mutation_p.H174Y|TESK2_uc010olo.1_Missense_Mutation_p.H91Y|TESK2_uc009vxs.1_5'UTR	NM_007170	NP_009101	Q96S53	TESK2_HUMAN	testis-specific protein kinase 2	174	Protein kinase.				actin cytoskeleton organization|focal adhesion assembly|spermatogenesis	nucleus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(2)|breast(2)|pancreas(1)	5	Acute lymphoblastic leukemia(166;0.155)					AGGTCCCGATGAAAAATGCCT	0.443													11	35					0	0	0.000978159	0	0
CYP4Z1	199974	broad.mit.edu	37	1	47534324	47534324	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:47534324C>T	uc001cqu.1	+	2	211	c.208C>T	c.(208-210)CAT>TAT	p.H70Y		NM_178134	NP_835235	Q86W10	CP4Z1_HUMAN	cytochrome P450 4Z1	70	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			skin(1)	1						TGAGGTGTATCATAAGCTGAT	0.463													23	99					0	0	0.00278032	0	0
FOXE3	2301	broad.mit.edu	37	1	47882374	47882374	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:47882374C>T	uc001crk.2	+	1	631	c.387C>T	c.(385-387)TTC>TTT	p.F129F		NM_012186	NP_036318	Q13461	FOXE3_HUMAN	forkhead box E3	129	Fork-head.				cell migration|embryonic organ morphogenesis|enteric nervous system development|hair follicle morphogenesis|hard palate development|lens morphogenesis in camera-type eye|pattern specification process|positive regulation of epithelial cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|soft palate development|thyroid gland development|thyroid hormone generation	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0				READ - Rectum adenocarcinoma(2;0.0908)		ACGACTGCTTCGTCAAGGTGC	0.642													13	51					0	0	0.00316338	0	0
SPATA6	54558	broad.mit.edu	37	1	48764525	48764525	+	Missense_Mutation	SNP	C	T	T	rs147329302	byFrequency	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:48764525C>T	uc001crr.1	-	13	1492	c.1327G>A	c.(1327-1329)GGT>AGT	p.G443S	SPATA6_uc001crs.1_Missense_Mutation_p.G427S|SPATA6_uc010omv.1_Missense_Mutation_p.G429S	NM_019073	NP_061946	Q9NWH7	SPAT6_HUMAN	spermatogenesis associated 6 precursor	443					cell differentiation|multicellular organismal development|spermatogenesis	extracellular region				ovary(1)	1						CAGTATTCACCGTCATCCAAA	0.398													24	89					0	0	0.00332997	0	0
ZCCHC11	23318	broad.mit.edu	37	1	52902464	52902464	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:52902464C>T	uc001ctx.2	-	26	4356	c.4122G>A	c.(4120-4122)GAG>GAA	p.E1374E	ZCCHC11_uc001cty.2_Silent_p.E1375E|ZCCHC11_uc001ctz.2_Silent_p.E1370E|ZCCHC11_uc001cua.1_Silent_p.E292E	NM_015269	NP_056084	Q5TAX3	TUT4_HUMAN	zinc finger, CCHC domain containing 11 isoform	1374	CCHC-type 3.				miRNA catabolic process|pre-miRNA processing|RNA 3'-end processing|stem cell maintenance	cytoplasm|nucleolus	nucleic acid binding|protein binding|protein binding|RNA uridylyltransferase activity|zinc ion binding			ovary(2)|skin(1)	3						CCAGCTTGACCTCTGGGCACT	0.488													153	186					0	0	0.00361006	0	0
C1orf163	65260	broad.mit.edu	37	1	53153603	53153604	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:53153603_53153604GG>AA	uc001cui.1	-	3	524_525	c.484_485CC>TT	c.(484-486)CCA>TTA	p.P162L		NM_023077	NP_075565	Q96BR5	SELR1_HUMAN	hypothetical protein LOC65260	162	Sel1-like 4.						binding				0						GGGAAAGCCTGGGGCACCCTGC	0.545													54	41					0	0	6.4e-05	0	0
SLC1A7	6512	broad.mit.edu	37	1	53553855	53553855	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:53553855G>A	uc001cuy.2	-	11	1677	c.1509C>T	c.(1507-1509)ATC>ATT	p.I503I	SLC1A7_uc001cux.2_Silent_p.I156I	NM_006671	NP_006662	O00341	EAA5_HUMAN	solute carrier family 1 (glutamate transporter),	503						integral to membrane|plasma membrane	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|large_intestine(1)	3				Colorectal(1306;0.234)	L-Glutamic Acid(DB00142)	GGGCTGCCACGATCTCCTGGA	0.612													8	21					0	0	0.00307968	0	0
LRP8	7804	broad.mit.edu	37	1	53726184	53726184	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:53726184T>C	uc001cvi.1	-	13	2150	c.2008A>G	c.(2008-2010)AAC>GAC	p.N670D	LRP8_uc001cvh.1_Missense_Mutation_p.N223D|LRP8_uc001cvk.1_Missense_Mutation_p.N500D|LRP8_uc001cvj.1_Missense_Mutation_p.N670D|LRP8_uc001cvl.1_Missense_Mutation_p.N541D|LRP8_uc001cvm.1_Missense_Mutation_p.N255D	NM_004631	NP_004622	Q14114	LRP8_HUMAN	low density lipoprotein receptor-related protein	670	LDL-receptor class B 5.|Extracellular (Potential).				cytokine-mediated signaling pathway|endocytosis|lipid metabolic process|platelet activation|proteolysis	caveola	calcium ion binding|very-low-density lipoprotein particle receptor activity				0						TGTGGGTTGTTGAGGTTCTCA	0.537													59	57					0	0	0.00361006	0	0
DMRTB1	63948	broad.mit.edu	37	1	53927229	53927229	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:53927229C>T	uc001cvq.1	+	2	716	c.661C>T	c.(661-663)CCG>TCG	p.P221S		NM_033067	NP_149056	Q96MA1	DMRTB_HUMAN	DMRT-like family B with proline-rich C-terminal,	221	Pro-rich.				sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						CTGCCCGTTCCCGCTGGGCTA	0.657													23	67					0	0	0.00188189	0	0
GLIS1	148979	broad.mit.edu	37	1	53995472	53995472	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:53995472G>T	uc001cvr.1	-	4	1516	c.949C>A	c.(949-951)CTA>ATA	p.L317I		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	317					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						ACCGTGTCTAGGTGGGTGCGC	0.662													24	84					7.26314e-15	1.99072e-14	0.00127121	1	0
GLIS1	148979	broad.mit.edu	37	1	54060405	54060405	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:54060405G>A	uc001cvr.1	-	3	738	c.171C>T	c.(169-171)CTC>CTT	p.L57L		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	57					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						TGCCCTCGGGGAGGTGGGTCT	0.701													14	11					0	0	0.00244969	0	0
LDLRAD1	388633	broad.mit.edu	37	1	54474787	54474787	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:54474787G>A	uc001cwm.1	-	6	504	c.486C>T	c.(484-486)CCC>CCT	p.P162P	LDLRAD1_uc010onz.1_3'UTR|LDLRAD1_uc010ooa.1_Silent_p.P119P|LDLRAD1_uc009vzn.1_RNA	NM_001010978	NP_001010978	Q5T700	LRAD1_HUMAN	low density lipoprotein receptor class A domain	162	LDL-receptor class A 3; atypical.					integral to membrane	receptor activity			skin(2)|large_intestine(1)	3						CAGGGCCGCAGGGTGGGCACA	0.582													37	136					0	0	0.00148497	0	0
CDCP2	200008	broad.mit.edu	37	1	54610386	54610386	+	Silent	SNP	G	A	A	rs150004831		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:54610386G>A	uc001cwv.1	-	2	1028	c.180C>T	c.(178-180)ATC>ATT	p.I60I		NM_201546	NP_963840	Q5VXM1	CDCP2_HUMAN	CUB domain containing protein 2 precursor	60	CUB 1.					extracellular region				ovary(1)	1						CGGCCACCACGATCAGCCAGC	0.557													22	22					0	0	0.00188189	0	0
C1orf175	374977	broad.mit.edu	37	1	55166875	55166875	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:55166875G>A	uc010ooe.1	+	19	3489	c.3165G>A	c.(3163-3165)GGG>GGA	p.G1055G	C1orf175_uc001cxq.2_RNA|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Silent_p.G573G|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Silent_p.G257G	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	1055	HEAT 2.					integral to membrane	binding				0						ACATGGATGGGATGCTGGTGG	0.592													32	34					0	0	0.00327116	0	0
BSND	7809	broad.mit.edu	37	1	55474182	55474182	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:55474182G>A	uc001cye.2	+	4	1087	c.844G>A	c.(844-846)GAC>AAC	p.D282N		NM_057176	NP_476517	Q8WZ55	BSND_HUMAN	barttin	282	Cytoplasmic (Potential).					basolateral plasma membrane|cytoplasm|integral to plasma membrane|protein complex				ovary(1)|skin(1)	2						GGAGGCTTCGGACACAGGTGG	0.597													35	23					0	0	0.0024448	0	0
C1orf168	199920	broad.mit.edu	37	1	57206409	57206409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:57206409C>T	uc001cym.3	-	13	2070	c.1664G>A	c.(1663-1665)AGA>AAA	p.R555K	C1orf168_uc009vzu.1_RNA|C1orf168_uc001cyl.2_RNA	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	555										ovary(3)|skin(2)	5						TATTTTAAATCTATCCTTTTC	0.348													5	12					0	0	0.00307968	0	0
C1orf168	199920	broad.mit.edu	37	1	57252873	57252873	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:57252873C>T	uc001cym.3	-	4	1334	c.928G>A	c.(928-930)GAA>AAA	p.E310K	C1orf168_uc009vzu.1_RNA	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	310										ovary(3)|skin(2)	5						GAGCCCTCTTCCACAGTCACT	0.493													42	37					0	0	0.00361006	0	0
C1orf168	199920	broad.mit.edu	37	1	57257903	57257903	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:57257903G>A	uc001cym.3	-	2	989	c.583C>T	c.(583-585)CCT>TCT	p.P195S	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Missense_Mutation_p.P195S	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	195										ovary(3)|skin(2)	5						TTCTGGGAAGGAAGAGTCTGG	0.468													23	82					0	0	0.00332997	0	0
C8A	731	broad.mit.edu	37	1	57347218	57347218	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:57347218C>T	uc001cyo.2	+	5	697	c.565C>T	c.(565-567)CGA>TGA	p.R189*		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	189	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						GAGGGAGCTTCGATATGACTC	0.453													15	29					0	0	0.00074312	0	0
C8A	731	broad.mit.edu	37	1	57347252	57347252	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:57347252G>A	uc001cyo.2	+	5	731	c.599G>A	c.(598-600)GGA>GAA	p.G200E		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	200	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						CTCTACTATGGAGATGATGAG	0.483													5	31					0	0	0.00116845	0	0
C8B	732	broad.mit.edu	37	1	57397489	57397489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:57397489G>A	uc001cyp.2	-	11	1682	c.1615C>T	c.(1615-1617)CGG>TGG	p.R539W	C8B_uc010oon.1_Missense_Mutation_p.R477W|C8B_uc010ooo.1_Missense_Mutation_p.R487W	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	539					complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						TTACTCTTCCGATAGGAGACC	0.502													19	21					0	0	0.00152264	0	0
HOOK1	51361	broad.mit.edu	37	1	60302572	60302572	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:60302572C>T	uc009wad.2	+	8	604	c.502C>T	c.(502-504)CCT>TCT	p.P168S	HOOK1_uc001czo.2_Missense_Mutation_p.P168S|HOOK1_uc001czp.2_RNA|HOOK1_uc010oor.1_Missense_Mutation_p.P126S	NM_015888	NP_056972	Q9UJC3	HOOK1_HUMAN	hook homolog 1	168	Sufficient for interaction with microtubules.				early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|microtubule cytoskeleton organization|multicellular organismal development|protein transport	FHF complex|microtubule	identical protein binding			ovary(1)|breast(1)	2	all_cancers(7;0.000129)					ATTGAGCTCTCCTCCAAATGA	0.299													17	52					0	0	0.000958276	0	0
NFIA	4774	broad.mit.edu	37	1	61553989	61553989	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:61553989G>A	uc001czw.2	+	2	680	c.196G>A	c.(196-198)GAG>AAG	p.E66K	NFIA_uc001czy.2_Missense_Mutation_p.E58K|NFIA_uc010oos.1_Missense_Mutation_p.E111K|NFIA_uc001czv.2_Missense_Mutation_p.E66K	NM_001134673	NP_001128145	Q12857	NFIA_HUMAN	nuclear factor I/A isoform 1	66	CTF/NF-I.				DNA replication|viral genome replication	cell junction|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)|skin(1)	2						TGAAAAACCAGAGGTCAAGCA	0.428													18	63					0	0	0.00188189	0	0
KANK4	163782	broad.mit.edu	37	1	62739788	62739788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:62739788C>T	uc001dah.3	-	3	1365	c.988G>A	c.(988-990)GAA>AAA	p.E330K	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	330										ovary(3)|skin(2)|lung(1)	6						CCCAGGCTTTCCTCAGTTACC	0.572													19	88					0	0	0.00121646	0	0
PDE4B	5142	broad.mit.edu	37	1	66833690	66833690	+	Missense_Mutation	SNP	C	T	T	rs151031090		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:66833690C>T	uc001dcn.2	+	15	1795	c.1604C>T	c.(1603-1605)ACG>ATG	p.T535M	PDE4B_uc009war.2_Missense_Mutation_p.T443M|PDE4B_uc001dco.2_Missense_Mutation_p.T535M|PDE4B_uc001dcp.2_Missense_Mutation_p.T520M|PDE4B_uc001dcq.2_Missense_Mutation_p.T363M|PDE4B_uc009was.2_Missense_Mutation_p.T302M	NM_001037341	NP_001032418	Q07343	PDE4B_HUMAN	phosphodiesterase 4B isoform 1	535					signal transduction	cytosol|insoluble fraction|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|central_nervous_system(1)	3					Adenosine monophosphate(DB00131)|Amrinone(DB01427)|Caffeine(DB00201)|Cilostazol(DB01166)|Dyphylline(DB00651)|Enprofylline(DB00824)|Papaverine(DB01113)|Pentoxifylline(DB00806)|Theophylline(DB00277)	ATGGTAGAAACGAAGAAAGTT	0.368													9	30					0	0	0.000274275	0	0
WDR78	79819	broad.mit.edu	37	1	67340619	67340619	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:67340619A>T	uc001dcx.2	-	5	701	c.645T>A	c.(643-645)GAT>GAA	p.D215E	WDR78_uc001dcy.2_Missense_Mutation_p.D215E|WDR78_uc001dcz.2_Missense_Mutation_p.D215E|WDR78_uc009waw.2_5'UTR|WDR78_uc009wax.2_Intron	NM_024763	NP_079039	Q5VTH9	WDR78_HUMAN	WD repeat domain 78 isoform 1	215										ovary(2)	2						TAACTTGCAAATCTAAAATAC	0.294													11	18					0	0	0.00244969	0	0
RPE65	6121	broad.mit.edu	37	1	68896760	68896760	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:68896760C>T	uc001dei.1	-	13	1492	c.1438G>A	c.(1438-1440)GAA>AAA	p.E480K		NM_000329	NP_000320	Q16518	RPE65_HUMAN	retinal pigment epithelium-specific protein	480					visual perception	cytoplasm|plasma membrane	all-trans-retinyl-palmitate hydrolase activity|metal ion binding|retinol isomerase activity			ovary(1)	1						TCATCTTCTTCCAAGGCATCT	0.398													21	22					0	0	0.00188189	0	0
LRRC7	57554	broad.mit.edu	37	1	70488833	70488833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:70488833G>A	uc001dep.2	+	15	1486	c.1456G>A	c.(1456-1458)GAA>AAA	p.E486K	LRRC7_uc009wbg.2_Intron	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	486						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						AGCCCCCTGGGAAAGGGGCCA	0.517													16	28					0	0	0.00074312	0	0
LRRC7	57554	broad.mit.edu	37	1	70505081	70505081	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:70505081C>T	uc001dep.2	+	19	3490	c.3460C>T	c.(3460-3462)CGC>TGC	p.R1154C	LRRC7_uc009wbg.2_Missense_Mutation_p.R438C|LRRC7_uc001deq.2_Missense_Mutation_p.R395C	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	1154						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						AGGGCTGGATCGCCAAAGCAG	0.527													31	71					0	0	0.00327116	0	0
C1orf173	127254	broad.mit.edu	37	1	75036972	75036972	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:75036972G>A	uc001dgg.2	-	14	4641	c.4422C>T	c.(4420-4422)TTC>TTT	p.F1474F		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1474	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						ATCCTAATCGGAATTTTTCAG	0.567													66	80					0	0	0.00361006	0	0
C1orf173	127254	broad.mit.edu	37	1	75037352	75037352	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:75037352C>T	uc001dgg.2	-	14	4261	c.4042G>A	c.(4042-4044)GAA>AAA	p.E1348K		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1348	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TCTGCCGTTTCACCACCTCCG	0.532													59	72					0	0	0.00361006	0	0
C1orf173	127254	broad.mit.edu	37	1	75055375	75055375	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:75055375C>T	uc001dgg.2	-	12	2335	c.2116G>A	c.(2116-2118)GAA>AAA	p.E706K	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.E500K	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	706	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GTGCTTTCTTCCCAAAGCTTA	0.478													37	127					0	0	0.00111076	0	0
C1orf173	127254	broad.mit.edu	37	1	75065431	75065431	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:75065431C>T	uc001dgg.2	-	11	1893	c.1674G>A	c.(1672-1674)GTG>GTA	p.V558V	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Silent_p.V352V	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	558	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TCTCATCTTTCACATTGTCAC	0.418													29	20					0	0	0.00127121	0	0
CRYZ	1429	broad.mit.edu	37	1	75188903	75188903	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:75188903G>A	uc001dgk.2	-	4	668	c.163C>T	c.(163-165)CGC>TGC	p.R55C	CRYZ_uc001dgj.2_Missense_Mutation_p.R55C|CRYZ_uc001dgl.2_Missense_Mutation_p.R55C|CRYZ_uc001dgm.2_5'UTR	NM_001130042	NP_001123514	Q08257	QOR_HUMAN	crystallin, zeta isoform a	55					protein homotetramerization|visual perception|xenobiotic catabolic process	cytosol|Golgi apparatus	mRNA 3'-UTR binding|NADPH binding|NADPH:quinone reductase activity|zinc ion binding				0					Dicumarol(DB00266)	GTACCAGAGCGAATGTATGTC	0.423													48	49					0	0	0.00361006	0	0
ST6GALNAC3	256435	broad.mit.edu	37	1	76878020	76878020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:76878020C>T	uc001dhh.2	+	3	704	c.541C>T	c.(541-543)CCG>TCG	p.P181S	ST6GALNAC3_uc001dhg.3_Missense_Mutation_p.P181S|ST6GALNAC3_uc010orh.1_Missense_Mutation_p.P116S	NM_152996	NP_694541	Q8NDV1	SIA7C_HUMAN	sialyltransferase 7C isoform 1	181	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			ovary(3)|skin(2)	5						TGGTATCTATCCGAATGCCCA	0.423													12	38					0	0	0.00244969	0	0
ST6GALNAC5	81849	broad.mit.edu	37	1	77510080	77510080	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:77510080G>A	uc001dhi.2	+	3	628	c.453G>A	c.(451-453)AGG>AGA	p.R151R	ST6GALNAC5_uc010ori.1_Intron|ST6GALNAC5_uc009wbw.2_RNA	NM_030965	NP_112227	Q9BVH7	SIA7E_HUMAN	sialyltransferase 7E	151	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			pancreas(1)|skin(1)	2						GCATCCAGAGGATCCTCCGCA	0.642													32	34					0	0	0.001512	0	0
ELTD1	64123	broad.mit.edu	37	1	79387305	79387305	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:79387305G>A	uc001diq.3	-	9	1406	c.1250C>T	c.(1249-1251)CCT>CTT	p.P417L		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	417	GPS.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		TACAATGGAAGGACCAGAGGA	0.358													7	15					0	0	0.00307968	0	0
ELTD1	64123	broad.mit.edu	37	1	79470843	79470843	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:79470843G>A	uc001diq.3	-	2	240	c.84C>T	c.(82-84)CTC>CTT	p.L28L		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	28	Extracellular (Potential).|EGF-like 1.				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		TTGCATTTGGGAGACAAGGTG	0.343													55	43					0	0	0.00361006	0	0
TTLL7	79739	broad.mit.edu	37	1	84386789	84386789	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:84386789G>A	uc001djc.2	-	12	1741	c.1345C>T	c.(1345-1347)CGA>TGA	p.R449*	TTLL7_uc001djb.2_RNA|TTLL7_uc001djd.2_RNA|TTLL7_uc001dje.2_RNA|TTLL7_uc001djf.2_RNA|TTLL7_uc001djg.2_RNA	NM_024686	NP_078962	Q6ZT98	TTLL7_HUMAN	tubulin tyrosine ligase-like family, member 7	449					cell differentiation|nervous system development|protein modification process	cilium|dendrite|microtubule basal body|perikaryon	tubulin-tyrosine ligase activity			ovary(1)	1				all cancers(265;0.0126)|Epithelial(280;0.0372)|OV - Ovarian serous cystadenocarcinoma(397;0.16)		CCCATATGTCGATTTTCATGT	0.323													11	49					0	0	0.00136819	0	0
GBP1	2633	broad.mit.edu	37	1	89520397	89520398	+	Missense_Mutation	DNP	CT	TG	TG	rs150057659		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:89520397_89520398CT>TG	uc001dmx.2	-	10	1852_1853	c.1632_1633AG>CA	c.(1630-1635)AAAGAG>AACAAG	p.544_545KE>NK		NM_002053	NP_002044	P32455	GBP1_HUMAN	guanylate binding protein 1,	544_545					interferon-gamma-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0156)|Epithelial(280;0.0291)		CTCTCTTGCTCTTTCAGCAACT	0.441													65	473					0	0	6.4e-05	0	0
LOC400759	400759	broad.mit.edu	37	1	89890038	89890038	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:89890038C>T	uc009wcy.1	+	5		c.779C>T				NR_003133				Homo sapiens cDNA, FLJ17004.												0						CTTGAGGTTTCTGTTTTTCTG	0.488													37	134					0	0	0.00428921	0	0
HSP90B3P	343477	broad.mit.edu	37	1	92108418	92108418	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:92108418C>T	uc010osx.1	+	3	445	c.445C>T	c.(445-447)CCA>TCA	p.P149S		NR_003130				SubName: Full=cDNA FLJ58812, highly similar to Endoplasmin (Heat shock protein 90kDa beta member 1);												0						CACATCTGATCCACGTGGTCT	0.363													27	3					0	0	0.00395357	0	0
BRDT	676	broad.mit.edu	37	1	92441903	92441903	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:92441903G>A	uc001dok.3	+	5	875	c.526G>A	c.(526-528)GAA>AAA	p.E176K	BRDT_uc001dol.3_Missense_Mutation_p.E176K|BRDT_uc010osz.1_Missense_Mutation_p.E180K|BRDT_uc009wdf.2_Missense_Mutation_p.E103K|BRDT_uc010ota.1_Missense_Mutation_p.E130K|BRDT_uc010otb.1_Missense_Mutation_p.E130K|BRDT_uc001dom.3_Missense_Mutation_p.E176K	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	176					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		TAAGCAGCAAGAAATTCCTTC	0.413													21	41					0	0	0.00188189	0	0
FAM69A	388650	broad.mit.edu	37	1	93316481	93316481	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:93316481C>T	uc001dpg.2	-	3	314	c.221G>A	c.(220-222)GGG>GAG	p.G74E	FAM69A_uc001dpc.2_Missense_Mutation_p.G74E|FAM69A_uc010otg.1_Missense_Mutation_p.G67E	NM_001006605	NP_001006606	Q5T7M9	FA69A_HUMAN	family with sequence similarity 69, member A	74	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane					0		all_lung(203;0.00265)|Lung NSC(277;0.00562)|all_neural(321;0.185)|Melanoma(281;0.192)|Glioma(108;0.203)		GBM - Glioblastoma multiforme(16;0.000563)|all cancers(265;0.000751)|Epithelial(280;0.127)		ACATGCAGGCCCATCAATAAC	0.338													5	27					0	0	0.00116845	0	0
ABCA4	24	broad.mit.edu	37	1	94578619	94578619	+	Missense_Mutation	SNP	G	A	A	rs150452677		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:94578619G>A	uc001dqh.2	-	2	174	c.70C>T	c.(70-72)CGC>TGC	p.R24C	ABCA4_uc010otn.1_Missense_Mutation_p.R24C	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	24	Helical; (Potential).		R -> H (in STGD1).		phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		ACCACAAAGCGAATCTGGAAA	0.428													77	72					0	0	0.00361006	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94668201	94668201	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:94668201G>A	uc001dqj.3	-	11	1411	c.1042C>T	c.(1042-1044)CGT>TGT	p.R348C	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dql.2_Missense_Mutation_p.R348C	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	348	Potential.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		TCTTCTGCACGAAACATGGAA	0.408													107	126					0	0	0.00361006	0	0
SLC44A3	126969	broad.mit.edu	37	1	95307626	95307626	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:95307626A>C	uc001dqv.3	+	8	938	c.831A>C	c.(829-831)GAA>GAC	p.E277D	SLC44A3_uc001dqx.3_Missense_Mutation_p.E277D|SLC44A3_uc010otq.1_Missense_Mutation_p.E209D|SLC44A3_uc010otr.1_Missense_Mutation_p.E241D|SLC44A3_uc001dqw.3_Missense_Mutation_p.E229D|SLC44A3_uc010ots.1_Missense_Mutation_p.E197D|SLC44A3_uc009wds.2_Missense_Mutation_p.E180D|SLC44A3_uc010ott.1_Missense_Mutation_p.E197D|SLC44A3_uc010otu.1_RNA	NM_001114106	NP_001107578	Q8N4M1	CTL3_HUMAN	solute carrier family 44, member 3 isoform 1	277						integral to membrane|plasma membrane	choline transmembrane transporter activity			kidney(1)	1		all_lung(203;0.000712)|Lung NSC(277;0.00316)		all cancers(265;0.039)|Epithelial(280;0.124)	Choline(DB00122)	TGGACACAGAAAGGGAAAATA	0.468													45	252					0	0	0.00285205	0	0
VCAM1	7412	broad.mit.edu	37	1	101186048	101186048	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:101186048C>T	uc001dti.2	+	2	201	c.81C>T	c.(79-81)ATC>ATT	p.I27I	VCAM1_uc001dtj.2_Silent_p.I27I|VCAM1_uc010ouj.1_Silent_p.I27I	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	27	Ig-like C2-type 1.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	CTTTTAAAATCGAGACCACCC	0.408													9	65					0	0	0.000673444	0	0
COL11A1	1301	broad.mit.edu	37	1	103427757	103427757	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:103427757C>A	uc001dul.2	-	40	3407	c.3089G>T	c.(3088-3090)GGG>GTG	p.G1030V	COL11A1_uc001duk.2_Missense_Mutation_p.G226V|COL11A1_uc001dum.2_Missense_Mutation_p.G1042V|COL11A1_uc001dun.2_Missense_Mutation_p.G991V|COL11A1_uc009weh.2_Missense_Mutation_p.G914V	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1030	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		ACCTCTTTCCCCTGGGAAACC	0.383													72	124					2.65773e-34	7.31892e-34	0.00361006	1	0
NTNG1	22854	broad.mit.edu	37	1	107937869	107937869	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:107937869G>A	uc001dvh.3	+	4	1699	c.981G>A	c.(979-981)GGG>GGA	p.G327G	NTNG1_uc001dvf.3_Silent_p.G327G|NTNG1_uc010out.1_Silent_p.G327G|NTNG1_uc001dvc.3_Silent_p.G327G|NTNG1_uc001dvi.2_5'UTR|NTNG1_uc001dve.2_RNA|NTNG1_uc009wek.2_RNA|NTNG1_uc001dvg.2_RNA|NTNG1_uc009wem.2_5'UTR|NTNG1_uc001dvd.1_Silent_p.G327G	NM_001113226	NP_001106697	Q9Y2I2	NTNG1_HUMAN	netrin G1 isoform 1	327	Laminin EGF-like 1.				axonogenesis	anchored to plasma membrane	protein binding			large_intestine(2)|ovary(2)|skin(2)	6		all_epithelial(167;1.39e-05)|all_lung(203;0.000115)|Lung NSC(277;0.000238)|Breast(1374;0.243)		Lung(183;0.0946)|BRCA - Breast invasive adenocarcinoma(282;0.237)|Epithelial(280;0.245)		CAGACTGTGGGAAATGCAAGA	0.483													16	113					0	0	0.00400662	0	0
NTNG1	22854	broad.mit.edu	37	1	108023381	108023382	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:108023381_108023382CC>TT	uc001dvh.3	+	8	2257_2258	c.1539_1540CC>TT	c.(1537-1542)GGCCAG>GGTTAG	p.Q514*	NTNG1_uc001dvf.3_Nonsense_Mutation_p.Q455*|NTNG1_uc010out.1_Nonsense_Mutation_p.Q480*|NTNG1_uc001dvc.3_Nonsense_Mutation_p.Q413*|NTNG1_uc001dvi.2_Missense_Mutation_p.A81V|NTNG1_uc001dve.2_RNA|NTNG1_uc009wek.2_RNA|NTNG1_uc001dvg.2_RNA|NTNG1_uc009wem.2_Missense_Mutation_p.P76L	NM_001113226	NP_001106697	Q9Y2I2	NTNG1_HUMAN	netrin G1 isoform 1	514					axonogenesis	anchored to plasma membrane	protein binding			large_intestine(2)|ovary(2)|skin(2)	6		all_epithelial(167;1.39e-05)|all_lung(203;0.000115)|Lung NSC(277;0.000238)|Breast(1374;0.243)		Lung(183;0.0946)|BRCA - Breast invasive adenocarcinoma(282;0.237)|Epithelial(280;0.245)		CCGACTCTGGCCAGGGCGCGCC	0.708													15	23					0	0	6.4e-05	0	0
VAV3	10451	broad.mit.edu	37	1	108417609	108417609	+	Missense_Mutation	SNP	G	A	A	rs151122345		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:108417609G>A	uc001dvk.1	-	2	289	c.235C>T	c.(235-237)CTC>TTC	p.L79F	VAV3_uc010ouw.1_Missense_Mutation_p.L79F|VAV3_uc001dvl.1_5'UTR|VAV3_uc010oux.1_Missense_Mutation_p.L79F	NM_006113	NP_006104	Q9UKW4	VAV3_HUMAN	vav 3 guanine nucleotide exchange factor isoform	79	CH.				angiogenesis|apoptosis|B cell receptor signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of B cell proliferation|regulation of Rho protein signal transduction|response to DNA damage stimulus|response to drug|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(5)|lung(2)|breast(2)	9		all_epithelial(167;5.38e-05)|all_lung(203;0.000314)|Lung NSC(277;0.000594)		Colorectal(144;0.0331)|Lung(183;0.128)|Epithelial(280;0.204)		CAGGCCGTGAGAAATGTCCTT	0.383													52	26					0	0	0.00361006	0	0
CSF1	1435	broad.mit.edu	37	1	110465890	110465890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:110465890C>T	uc001dyu.2	+	6	1060	c.647C>T	c.(646-648)GCC>GTC	p.A216V	CSF1_uc001dyt.2_Missense_Mutation_p.A216V|CSF1_uc001dyv.3_Intron|CSF1_uc001dyw.3_Missense_Mutation_p.A216V	NM_172212	NP_757351	P09603	CSF1_HUMAN	colony stimulating factor 1 isoform a precursor	216	Lumenal (Potential).				cell proliferation|developmental process involved in reproduction|macrophage differentiation|monocyte activation|osteoclast differentiation|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of cellular protein metabolic process|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|positive regulation of macrophage differentiation|positive regulation of monocyte differentiation|positive regulation of mononuclear cell proliferation|positive regulation of protein kinase activity	extracellular space|integral to membrane|perinuclear region of cytoplasm|plasma membrane|receptor complex	cytokine activity|growth factor activity|macrophage colony-stimulating factor receptor binding|protein homodimerization activity			ovary(1)	1		all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)|Acute lymphoblastic leukemia(138;0.204)		Lung(183;0.0238)|Colorectal(144;0.112)|all cancers(265;0.117)|Epithelial(280;0.127)|LUSC - Lung squamous cell carcinoma(189;0.135)		CCCTCCATGGCCCCTGTGGCT	0.642											OREG0013645	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	70	43					0	0	0.00361006	0	0
DENND2D	79961	broad.mit.edu	37	1	111730783	111730783	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:111730783C>T	uc001eak.1	-	11	1509	c.1309G>A	c.(1309-1311)GAA>AAA	p.E437K	DENND2D_uc001eal.1_Missense_Mutation_p.E434K	NM_024901	NP_079177	Q9H6A0	DEN2D_HUMAN	DENN/MADD domain containing 2D	437	dDENN.									ovary(1)	1		all_cancers(81;0.00198)|all_epithelial(167;0.000686)|all_lung(203;0.00318)|Lung NSC(277;0.00499)		Lung(183;0.0162)|Colorectal(144;0.069)|all cancers(265;0.0757)|LUSC - Lung squamous cell carcinoma(189;0.0845)|Epithelial(280;0.114)|COAD - Colon adenocarcinoma(174;0.14)		TTCTCGGCTTCCTGGATGAAA	0.473													23	102					0	0	0.00278032	0	0
CHIA	27159	broad.mit.edu	37	1	111862931	111862931	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:111862931G>A	uc001eas.2	+	12	1377	c.1274G>A	c.(1273-1275)GGA>GAA	p.G425E	CHIA_uc001ear.2_Missense_Mutation_p.G317E|CHIA_uc001eaq.2_Missense_Mutation_p.G317E|CHIA_uc009wgc.2_Missense_Mutation_p.G317E|CHIA_uc001eat.2_Missense_Mutation_p.G264E|CHIA_uc001eav.2_Missense_Mutation_p.G264E|CHIA_uc001eau.2_Missense_Mutation_p.G264E|CHIA_uc009wgd.2_Missense_Mutation_p.G264E	NM_201653	NP_970615	Q9BZP6	CHIA_HUMAN	acidic chitinase isoform c	425					apoptosis|cell wall chitin metabolic process|chitin catabolic process|digestion|immune response|positive regulation of chemokine secretion|production of molecular mediator involved in inflammatory response|response to acid|response to fungus	cytoplasm|extracellular space	cation binding|chitin binding|chitinase activity|kinase binding|lysozyme activity|sugar binding			ovary(1)	1		all_cancers(81;3.23e-05)|all_epithelial(167;1.2e-05)|all_lung(203;0.000154)|Lung NSC(277;0.000304)		Colorectal(144;0.0115)|Lung(183;0.0292)|COAD - Colon adenocarcinoma(174;0.0314)|all cancers(265;0.0477)|Epithelial(280;0.0918)|LUSC - Lung squamous cell carcinoma(189;0.154)		GGCAGCTCGGGAGGCAGTGGA	0.597													8	64					0	0	0.000442599	0	0
ATP5F1	515	broad.mit.edu	37	1	111998710	111998710	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:111998710C>T	uc001ebc.2	+	4	647	c.226C>T	c.(226-228)CCC>TCC	p.P76S	ATP5F1_uc009wgf.1_Missense_Mutation_p.P223S|ATP5F1_uc001ebd.3_Intron	NM_001688	NP_001679	P24539	AT5F1_HUMAN	ATP synthase, H+ transporting, mitochondrial F0	76					ATP catabolic process|respiratory electron transport chain	mitochondrial matrix|mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	hydrogen ion transporting ATP synthase activity, rotational mechanism|protein binding				0		all_cancers(81;8.16e-06)|all_epithelial(167;5.63e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|Colorectal(144;0.0296)|all cancers(265;0.0488)|Epithelial(280;0.0732)|COAD - Colon adenocarcinoma(174;0.114)|LUSC - Lung squamous cell carcinoma(189;0.135)		TCTTTTAGGACCCTATGTACT	0.378													26	232					0	0	0.001512	0	0
SYT6	148281	broad.mit.edu	37	1	114641753	114641753	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:114641753G>A	uc001eev.2	-	5	1322	c.1072C>T	c.(1072-1074)CAA>TAA	p.Q358*	SYT6_uc001eeu.2_Nonsense_Mutation_p.Q3*	NM_205848	NP_995320	Q5T7P8	SYT6_HUMAN	synaptotagmin VI	443	Cytoplasmic (Potential).|C2 2.				acrosomal vesicle exocytosis	cell junction|cytosol|integral to membrane|perinuclear endoplasmic reticulum|peripheral to membrane of membrane fraction|synaptic vesicle membrane	clathrin binding|metal ion binding|protein homodimerization activity|syntaxin binding|transporter activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Lung SC(450;0.184)	all_cancers(81;4.41e-08)|all_epithelial(167;5.18e-08)|all_lung(203;1.58e-05)|Lung NSC(69;2.82e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		AGGCTGACTTGATCCATGTTT	0.493													38	194					0	0	0.00321405	0	0
SYT6	148281	broad.mit.edu	37	1	114680414	114680414	+	Silent	SNP	G	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:114680414G>C	uc001eev.2	-	3	769	c.519C>G	c.(517-519)GCC>GCG	p.A173A		NM_205848	NP_995320	Q5T7P8	SYT6_HUMAN	synaptotagmin VI	258	Cytoplasmic (Potential).|C2 1.				acrosomal vesicle exocytosis	cell junction|cytosol|integral to membrane|perinuclear endoplasmic reticulum|peripheral to membrane of membrane fraction|synaptic vesicle membrane	clathrin binding|metal ion binding|protein homodimerization activity|syntaxin binding|transporter activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Lung SC(450;0.184)	all_cancers(81;4.41e-08)|all_epithelial(167;5.18e-08)|all_lung(203;1.58e-05)|Lung NSC(69;2.82e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		AAAAGTCCTTGGCAGGGAGGT	0.552													30	177					0	0	0.001512	0	0
DENND2C	163259	broad.mit.edu	37	1	115130354	115130354	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:115130354C>T	uc001efd.1	-	19	3353	c.2651G>A	c.(2650-2652)CGG>CAG	p.R884Q	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Missense_Mutation_p.R827Q	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	884										skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCCACTTTTCCGAAGCTCTCG	0.398													14	91					0	0	0.00400662	0	0
DENND2C	163259	broad.mit.edu	37	1	115147646	115147646	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:115147646G>A	uc001efd.1	-	11	2266	c.1564C>T	c.(1564-1566)CAT>TAT	p.H522Y	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Missense_Mutation_p.H465Y	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	522	UDENN.									skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTATAGCCATGATCATCCTGA	0.363													7	72					0	0	0.00198382	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	A	A	rs11554290		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:115256529T>A	uc009wgu.2	-	3	436	c.182A>T	c.(181-183)CAA>CTA	p.Q61L		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			202	93					0	0	0.00361006	0	0
C1orf161	126868	broad.mit.edu	37	1	116675916	116675916	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:116675916C>T	uc001egc.1	+	7	1284	c.1019C>T	c.(1018-1020)CCG>CTG	p.P340L		NM_152367	NP_689580	Q8N8X9	MB213_HUMAN	hypothetical protein LOC126868	340											0	Lung SC(450;0.184)	all_cancers(81;0.00142)|all_lung(203;0.000139)|all_epithelial(167;0.000401)|Lung NSC(69;0.000705)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		TGCACCAACCCGACTGAACTG	0.587													17	113					0	0	0.00229938	0	0
IGSF3	3321	broad.mit.edu	37	1	117156446	117156446	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:117156446G>A	uc001egr.1	-	4	1478	c.773C>T	c.(772-774)TCG>TTG	p.S258L	IGSF3_uc001egq.1_Missense_Mutation_p.S258L	NM_001007237	NP_001007238	O75054	IGSF3_HUMAN	immunoglobulin superfamily, member 3 isoform 2	258	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Lung SC(450;0.225)	all_cancers(81;1.24e-06)|all_epithelial(167;4.85e-07)|all_lung(203;1.66e-06)|Lung NSC(69;1.11e-05)		Lung(183;0.0142)|Colorectal(144;0.0929)|LUSC - Lung squamous cell carcinoma(189;0.108)|COAD - Colon adenocarcinoma(174;0.139)|all cancers(265;0.159)|Epithelial(280;0.166)		AGCATACCACGACCCATCCGG	0.602													8	44					0	0	0.000442599	0	0
SPAG17	200162	broad.mit.edu	37	1	118624093	118624093	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:118624093C>T	uc001ehk.2	-	14	2003	c.1935G>A	c.(1933-1935)CAG>CAA	p.Q645Q		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	645						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		GCTGCCTTATCTGTTTAGCAA	0.413													30	136					0	0	0.00178596	0	0
WARS2	10352	broad.mit.edu	37	1	119576822	119576822	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:119576822G>A	uc001ehn.2	-	5	558	c.530C>T	c.(529-531)CCT>CTT	p.P177L	WARS2_uc010oxf.1_Missense_Mutation_p.P83L|WARS2_uc001ehm.2_Missense_Mutation_p.P177L|WARS2_uc010oxg.1_Missense_Mutation_p.P120L|WARS2_uc010oxh.1_Silent_p.S148S|WARS2_uc010oxi.1_Silent_p.S54S	NM_015836	NP_056651	Q9UGM6	SYWM_HUMAN	mitochondrial tryptophanyl tRNA synthetase 2	177					tryptophanyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|tryptophan-tRNA ligase activity				0	all_neural(166;0.187)	all_lung(203;2.48e-06)|Lung NSC(69;1.74e-05)|all_epithelial(167;0.000564)		Lung(183;0.0629)	L-Tryptophan(DB00150)	CTCCCCAACAGGAACGTGTGT	0.443													16	88					0	0	0.000566183	0	0
FCGR1B	2210	broad.mit.edu	37	1	120930086	120930086	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:120930086C>T	uc001eip.2	-	4	565	c.515G>A	c.(514-516)GGA>GAA	p.G172E	FCGR1B_uc001eiq.2_Missense_Mutation_p.G80E|FCGR1B_uc010oxl.1_RNA|FCGR1B_uc009whr.2_Missense_Mutation_p.G172E|FCGR1B_uc009whs.2_Missense_Mutation_p.G173E	NM_001017986	NP_001017986	Q92637	FCGRB_HUMAN	Fc fragment of IgG, high affinity Ib, receptor	172	Extracellular (Potential).|Ig-like C2-type 2.				interferon-gamma-mediated signaling pathway	integral to membrane|plasma membrane	IgG binding|immunoglobulin receptor activity				0	all_neural(166;0.181)	all_lung(203;7.27e-05)|Lung NSC(69;0.000389)|all_epithelial(167;0.068)		Lung(183;0.0327)|LUSC - Lung squamous cell carcinoma(189;0.19)		GCGATGCTTTCCCATGCCTGA	0.393													30	190					0	0	0.0025221	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144865845	144865845	+	Missense_Mutation	SNP	C	T	T	rs148146447		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:144865845C>T	uc001elw.3	-	35	6026	c.5735G>A	c.(5734-5736)CGA>CAA	p.R1912Q	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.R1806Q|PDE4DIP_uc001elv.3_Missense_Mutation_p.R919Q|PDE4DIP_uc001ema.2_Missense_Mutation_p.R99Q	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1912	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		CTGAAGTCTTCGATTGTCTTC	0.478			T	PDGFRB	MPD								108	590					0	0	0.00361006	0	0
ANKRD34A	284615	broad.mit.edu	37	1	145473767	145473767	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:145473767G>A	uc001enq.1	+	4	1732	c.439G>A	c.(439-441)GAT>AAT	p.D147N	NBPF10_uc001emp.3_Intron	NM_001039888	NP_001034977	Q69YU3	AN34A_HUMAN	ankyrin repeat domain 34	147											0	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CATCACCACCGATACCTCGCC	0.647													18	47					0	0	0.000958276	0	0
ANKRD34A	284615	broad.mit.edu	37	1	145474550	145474550	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:145474550G>A	uc001enq.1	+	4	2515	c.1222G>A	c.(1222-1224)GGC>AGC	p.G408S	NBPF10_uc001emp.3_Intron|LIX1L_uc001enr.2_5'Flank	NM_001039888	NP_001034977	Q69YU3	AN34A_HUMAN	ankyrin repeat domain 34	408	Pro-rich.										0	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GGAGCGGAGGGGCTCGGGGAC	0.682													4	9					0	0	0.000602214	0	0
PIAS3	10401	broad.mit.edu	37	1	145581490	145581490	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:145581490G>A	uc001eoc.1	+	9	1162	c.1071G>A	c.(1069-1071)ATG>ATA	p.M357I	NBPF10_uc001emp.3_Intron|PIAS3_uc001eod.1_Missense_Mutation_p.M26I	NM_006099	NP_006090	Q9Y6X2	PIAS3_HUMAN	protein inhibitor of activated STAT, 3	357	SP-RING-type.				positive regulation of protein sumoylation|protein sumoylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck	enzyme binding|nucleic acid binding|protein C-terminus binding|zinc ion binding			ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					ATCTACAGATGAATGAGAAGA	0.512													107	82					0	0	0.00361006	0	0
BCL9	607	broad.mit.edu	37	1	147096628	147096628	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:147096628C>T	uc001epq.2	+	10	4889	c.4149C>T	c.(4147-4149)TCC>TCT	p.S1383S	BCL9_uc010ozr.1_Silent_p.S1297S	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	1383					Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					TGATGATGTCCATGCAGGGCA	0.627			T	IGH@|IGL@	B-ALL								14	37					0	0	0.00244969	0	0
GJA8	2703	broad.mit.edu	37	1	147380328	147380328	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:147380328C>T	uc001epu.1	+	2	309	c.246C>T	c.(244-246)ATC>ATT	p.I82I		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	82	Helical; (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					TGCTGCAGATCATCTTCGTCT	0.627													16	81					0	0	0.000958276	0	0
GJA8	2703	broad.mit.edu	37	1	147381047	147381047	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:147381047C>T	uc001epu.1	+	2	1028	c.965C>T	c.(964-966)TCC>TTC	p.S322F		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	322	Cytoplasmic (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					ACACTGCCTTCCTACGCTCAG	0.627													5	37					0	0	0.00116845	0	0
SV2A	9900	broad.mit.edu	37	1	149883442	149883442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:149883442G>A	uc001etg.2	-	3	1204	c.713C>T	c.(712-714)TCG>TTG	p.S238L	SV2A_uc001eth.2_Missense_Mutation_p.S238L	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	238	Helical; (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	GACTGAGAGCGAGATGAGCAG	0.582													9	55					0	0	0.000274275	0	0
SV2A	9900	broad.mit.edu	37	1	149885275	149885275	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:149885275C>T	uc001etg.2	-	2	609	c.118G>A	c.(118-120)GAA>AAA	p.E40K	SV2A_uc001eth.2_Missense_Mutation_p.E40K	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	40	Cytoplasmic (Potential).|Interaction with SYT1 (By similarity).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	CGGGAATATTCGTCCTGGACT	0.537													19	119					0	0	0.000958276	0	0
SF3B4	10262	broad.mit.edu	37	1	149895580	149895580	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:149895580G>A	uc001etj.1	-	6	1180	c.1129C>T	c.(1129-1131)CCT>TCT	p.P377S	SF3B4_uc001eti.1_Missense_Mutation_p.P141S|SF3B4_uc001etk.1_Missense_Mutation_p.P377S	NM_005850	NP_005841	Q15427	SF3B4_HUMAN	splicing factor 3b, subunit 4	377						nucleoplasm|U12-type spliceosomal complex	nucleotide binding|protein binding|RNA binding			ovary(1)	1	Breast(34;0.0009)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			ATCAGTGGAGGAGGTCCACGC	0.617													17	64					0	0	0.00121646	0	0
MTMR11	10903	broad.mit.edu	37	1	149905813	149905813	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:149905813G>A	uc001etl.3	-	8	957	c.706C>T	c.(706-708)CCT>TCT	p.P236S	MTMR11_uc001etm.1_Missense_Mutation_p.P164S|MTMR11_uc010pbm.1_Missense_Mutation_p.P208S|MTMR11_uc010pbn.1_Missense_Mutation_p.P78S	NM_001145862	NP_001139334	A4FU01	MTMRB_HUMAN	myotubularin related protein 11 isoform a	236	Myotubularin phosphatase.						phosphatase activity			central_nervous_system(1)	1	Breast(34;0.0009)|Ovarian(49;0.0377)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			ATTCGGTTAGGGACCCAGAAG	0.478													55	79					0	0	0.00361006	0	0
GOLPH3L	55204	broad.mit.edu	37	1	150667295	150667295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:150667295C>T	uc001evj.2	-	2	237	c.20G>A	c.(19-21)CGG>CAG	p.R7Q	GOLPH3L_uc010pci.1_Missense_Mutation_p.R7Q	NM_018178	NP_060648	Q9H4A5	GLP3L_HUMAN	Golgi phosphoprotein 3-like	7						Golgi cisterna membrane				ovary(1)	1	all_cancers(9;3.09e-52)|all_epithelial(9;4.47e-43)|all_lung(15;1.09e-34)|Lung NSC(24;4.04e-31)|Breast(34;0.000615)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;1.2e-23)|all cancers(9;4.81e-23)|OV - Ovarian serous cystadenocarcinoma(6;1.93e-15)|BRCA - Breast invasive adenocarcinoma(12;0.000479)|LUSC - Lung squamous cell carcinoma(543;0.171)			GCGACGGGCCCGGTGAGTTAA	0.393													60	107					0	0	0.00361006	0	0
SEMA6C	10500	broad.mit.edu	37	1	151110192	151110192	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:151110192C>T	uc001ewu.2	-	10	1051	c.751G>A	c.(751-753)GGG>AGG	p.G251R	SEMA6C_uc001ewv.2_Missense_Mutation_p.G251R|SEMA6C_uc001eww.2_Missense_Mutation_p.G211R|SEMA6C_uc010pcq.1_Missense_Mutation_p.G251R|SEMA6C_uc009wml.1_RNA	NM_030913	NP_112175	Q9H3T2	SEM6C_HUMAN	semaphorin Y precursor	251	Extracellular (Potential).|Sema.					integral to membrane	receptor activity			ovary(1)|skin(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			CTTACCCTCCCCAGCCGAGCA	0.572													41	92					0	0	0.00361006	0	0
SELENBP1	8991	broad.mit.edu	37	1	151337081	151337081	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:151337081G>A	uc001exx.2	-	12	1404	c.1357C>T	c.(1357-1359)CCA>TCA	p.P453S	SELENBP1_uc010pcy.1_Missense_Mutation_p.P495S|SELENBP1_uc001exy.2_Missense_Mutation_p.P350S|SELENBP1_uc001exz.2_Missense_Mutation_p.P350S|SELENBP1_uc010pcz.1_Missense_Mutation_p.P391S|SELENBP1_uc009wms.2_Missense_Mutation_p.P289S|SELENBP1_uc009wmt.2_Missense_Mutation_p.P350S|SELENBP1_uc001eya.2_Missense_Mutation_p.P389S|SELENBP1_uc009wmu.2_3'UTR	NM_003944	NP_003935	Q13228	SBP1_HUMAN	selenium binding protein 1	453					protein transport	cytosol|membrane|nucleolus	protein binding|selenium binding				0	Lung SC(34;0.00471)|Ovarian(49;0.00871)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			GCAAGGGCTGGGCCAAGGGGC	0.567													68	56					0	0	0.00361006	0	0
FLG	2312	broad.mit.edu	37	1	152276668	152276668	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:152276668C>T	uc001ezu.1	-	3	10730	c.10694G>A	c.(10693-10695)GGA>GAA	p.G3565E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3565	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGAGCAGATCCACGATGGTT	0.567									Ichthyosis				56	320					0	0	0.00361006	0	0
FLG	2312	broad.mit.edu	37	1	152282040	152282040	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:152282040C>T	uc001ezu.1	-	3	5358	c.5322G>A	c.(5320-5322)CAG>CAA	p.Q1774Q		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1774	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CGGACTCAGACTGTTCATGAG	0.612									Ichthyosis				43	254					0	0	0.00222228	0	0
FLG2	388698	broad.mit.edu	37	1	152329818	152329818	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:152329818C>T	uc001ezw.3	-	3	517	c.444G>A	c.(442-444)AGG>AGA	p.R148R	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	148	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCACAGTTCCCCTTGAGTGCC	0.468													40	225					0	0	0.00222228	0	0
LCE2C	353140	broad.mit.edu	37	1	152648570	152648570	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:152648570A>G	uc001fah.2	+	2	134	c.79A>G	c.(79-81)AAG>GAG	p.K27E		NM_178429	NP_848516	Q5TA81	LCE2C_HUMAN	late cornified envelope 2C	27	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			atgtccacctaagtgtccccc	0.428													36	76					0	0	0.00428921	0	0
KPRP	448834	broad.mit.edu	37	1	152732820	152732820	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:152732820C>T	uc001fal.1	+	2	814	c.756C>T	c.(754-756)ACC>ACT	p.T252T		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	252						cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTCGGAGCACCAGCAGATGCC	0.607													23	61					0	0	0.00332997	0	0
IVL	3713	broad.mit.edu	37	1	152882751	152882751	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:152882751G>A	uc001fau.2	+	2	524	c.478G>A	c.(478-480)GAG>AAG	p.E160K		NM_005547	NP_005538	P07476	INVO_HUMAN	involucrin	160	39 X 10 AA approximate tandem repeats of [LP]-[EKG]-[LHVYQEK]-[PLSQE]-[EQDV]- [QHEKRGA]-Q-[EMVQLP]-[GKLE]-[QHVNLD].|1.				isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine|keratinization|response to UV-B	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(3)	3	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGagcagcaggaggggcacct	0.219													7	33					0	0	0.00307968	0	0
IVL	3713	broad.mit.edu	37	1	152883861	152883861	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:152883861C>T	uc001fau.2	+	2	1634	c.1588C>T	c.(1588-1590)CTG>TTG	p.L530L		NM_005547	NP_005538	P07476	INVO_HUMAN	involucrin	530	39 X 10 AA approximate tandem repeats of [LP]-[EKG]-[LHVYQEK]-[PLSQE]-[EQDV]- [QHEKRGA]-Q-[EMVQLP]-[GKLE]-[QHVNLD].|38.				isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine|keratinization|response to UV-B	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(3)	3	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			ggaggggcagctgaaggacct	0.184													15	13					0	0	0.00244969	0	0
S100A3	6274	broad.mit.edu	37	1	153520175	153520175	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:153520175G>A	uc001fca.1	-	3	372	c.289C>T	c.(289-291)CCC>TCC	p.P97S	S100A4_uc001fby.2_5'Flank|S100A4_uc001fbz.2_5'Flank|uc009wog.1_Intron	NM_002960	NP_002951	P33764	S10A3_HUMAN	S100 calcium binding protein A3	97							calcium ion binding|protein binding				0	all_lung(78;5.98e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			GAGCAGGGGGGCTCTGAGGGG	0.622													37	73					0	0	0.00195071	0	0
NPR1	4881	broad.mit.edu	37	1	153659521	153659521	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:153659521G>A	uc001fcs.3	+	12	2314	c.1893G>A	c.(1891-1893)CTG>CTA	p.L631L	NPR1_uc010pdz.1_Silent_p.L377L|NPR1_uc010pea.1_Silent_p.L109L	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	631	Cytoplasmic (Potential).|Protein kinase.				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	GCATCACCCTGGACTGGATGT	0.562													13	57					0	0	0.00074312	0	0
NUP210L	91181	broad.mit.edu	37	1	154101776	154101776	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:154101776T>C	uc001fdw.2	-	8	1127	c.1055A>G	c.(1054-1056)TAT>TGT	p.Y352C	NUP210L_uc009woq.2_Translation_Start_Site|NUP210L_uc010peh.1_Missense_Mutation_p.Y352C	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	352						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			CTCTACAACATATATGGTGCA	0.363													30	173					0	0	0.00327116	0	0
KCNN3	3782	broad.mit.edu	37	1	154705510	154705510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:154705510C>T	uc001ffp.2	-	4	1873	c.1559G>A	c.(1558-1560)GGG>GAG	p.G520E	KCNN3_uc001ffo.2_Missense_Mutation_p.G215E	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	525						integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			GACACCTTTCCCACAGTATGT	0.507													23	64					0	0	0.00229938	0	0
PKLR	5313	broad.mit.edu	37	1	155263375	155263375	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:155263375C>T	uc001fkb.3	-	8	1162	c.1123G>A	c.(1123-1125)GAG>AAG	p.E375K	RAG1AP1_uc010pey.1_Intron|PKLR_uc001fka.3_Missense_Mutation_p.E344K	NM_000298	NP_000289	P30613	KPYR_HUMAN	pyruvate kinase, liver and RBC isoform 1	375					endocrine pancreas development|energy reserve metabolic process|glycolysis|positive regulation of cellular metabolic process	cytosol	ATP binding|magnesium ion binding|potassium ion binding|pyruvate kinase activity			skin(4)|ovary(1)	5	all_lung(78;6.99e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;3.18e-10)|all cancers(21;7.9e-10)|BRCA - Breast invasive adenocarcinoma(34;0.00116)|LUSC - Lung squamous cell carcinoma(543;0.127)		Pyruvic acid(DB00119)	ATCATGCTCTCCAGCATCTGG	0.577													47	19					0	0	0.00361006	0	0
SEMA4A	64218	broad.mit.edu	37	1	156132739	156132739	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:156132739G>A	uc001fnl.2	+	10	1092	c.988G>A	c.(988-990)GTT>ATT	p.V330I	SEMA4A_uc009wrq.2_Missense_Mutation_p.V330I|SEMA4A_uc001fnm.2_Missense_Mutation_p.V330I|SEMA4A_uc001fnn.2_Missense_Mutation_p.V198I|SEMA4A_uc001fno.2_Missense_Mutation_p.V330I	NM_022367	NP_071762	Q9H3S1	SEM4A_HUMAN	semaphorin B precursor	330	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.158)					CTCCAGGCAGGTTGGCGGGAC	0.537													52	62					0	0	0.00361006	0	0
INSRR	3645	broad.mit.edu	37	1	156821858	156821858	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:156821858G>A	uc010pht.1	-	3	1017	c.763C>T	c.(763-765)CAG>TAG	p.Q255*	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron|INSRR_uc009wsj.1_Nonsense_Mutation_p.Q255*	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	255					protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity	p.Q255H(1)		lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CAGGCACCCTGGAAGTAGAGG	0.667													6	37					0	0	0.00116845	0	0
INSRR	3645	broad.mit.edu	37	1	156824046	156824046	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:156824046C>T	uc010pht.1	-	2	389	c.135G>A	c.(133-135)CTG>CTA	p.L45L	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron|INSRR_uc009wsj.1_Silent_p.L45L	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	45					protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TGCAGTTCTCCAGCTGACGAA	0.627													7	36					0	0	0.00198382	0	0
PEAR1	375033	broad.mit.edu	37	1	156883701	156883701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:156883701C>T	uc001fqj.1	+	22	2887	c.2771C>T	c.(2770-2772)CCA>CTA	p.P924L	PEAR1_uc001fqk.1_Missense_Mutation_p.P549L	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	924	Pro-rich.					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					AGTGAGAACCCATATGCCACC	0.622													9	43					0	0	0.000442599	0	0
ARHGEF11	9826	broad.mit.edu	37	1	156916804	156916804	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:156916804G>A	uc001fqo.2	-	26	3412	c.2372C>T	c.(2371-2373)TCC>TTC	p.S791F	ARHGEF11_uc010phu.1_Missense_Mutation_p.S207F|ARHGEF11_uc001fqn.2_Missense_Mutation_p.S831F	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	791	DH.				actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TTCACACCAGGAATCTGGGGC	0.522													30	140					0	0	0.0024448	0	0
FCRL3	115352	broad.mit.edu	37	1	157665383	157665383	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:157665383G>A	uc001frb.2	-	8	1439	c.1147C>T	c.(1147-1149)CCT>TCT	p.P383S	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.P383S|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_Missense_Mutation_p.P109S|FCRL3_uc001frc.1_Missense_Mutation_p.P383S	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	383	Ig-like C2-type 5.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					GTGAGGACAGGGTGAGATACC	0.572													14	53					0	0	0.00400662	0	0
FCRL2	79368	broad.mit.edu	37	1	157738411	157738411	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:157738411A>C	uc001fre.2	-	5	735	c.676T>G	c.(676-678)TGC>GGC	p.C226G	FCRL2_uc001frd.2_5'Flank|FCRL2_uc010phz.1_Missense_Mutation_p.C226G|FCRL2_uc009wsp.2_Intron	NM_030764	NP_110391	Q96LA5	FCRL2_HUMAN	Fc receptor-like 2 precursor	226	Ig-like C2-type 3.|Extracellular (Potential).				cell-cell signaling	integral to membrane|plasma membrane|soluble fraction	receptor activity|SH3/SH2 adaptor activity			ovary(1)|pancreas(1)	2	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			GCCACTGAGCAGAGCAGGATC	0.522													38	179					0	0	0.00170553	0	0
CD1D	912	broad.mit.edu	37	1	158152903	158152903	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:158152903G>A	uc001frr.2	+	5	1342	c.843G>A	c.(841-843)GTG>GTA	p.V281V	CD1D_uc009wss.2_Intron	NM_001766	NP_001757	P15813	CD1D_HUMAN	CD1D antigen precursor	281	Ig-like.|Extracellular (Potential).				antigen processing and presentation, endogenous lipid antigen via MHC class Ib|detection of bacterium|innate immune response|interspecies interaction between organisms|positive regulation of innate immune response|T cell selection	endosome membrane|integral to plasma membrane|lysosomal membrane	beta-2-microglobulin binding|exogenous lipid antigen binding|histone binding			ovary(1)	1	all_hematologic(112;0.0378)					CCTGTCGGGTGAAGCACAGCA	0.602													22	74					0	0	0.000720815	0	0
OR10K1	391109	broad.mit.edu	37	1	158435611	158435611	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:158435611C>T	uc010pij.1	+	1	260	c.260C>T	c.(259-261)TCC>TTC	p.S87F		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	87	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GACCTGCTGTCCCAGAAGAAG	0.488													27	139					0	0	0.00127121	0	0
SPTA1	6708	broad.mit.edu	37	1	158648241	158648241	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:158648241G>A	uc001fst.1	-	6	961	c.762C>T	c.(760-762)CTC>CTT	p.L254L		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	254	Spectrin 3.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TCTGTCTCTGGAGAGCCAAAC	0.428													24	17					0	0	0.000878237	0	0
OR6N1	128372	broad.mit.edu	37	1	158736239	158736239	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:158736239G>A	uc010piq.1	-	1	234	c.234C>T	c.(232-234)ATC>ATT	p.I78I		NM_001005185	NP_001005185	Q8NGY5	OR6N1_HUMAN	olfactory receptor, family 6, subfamily N,	78	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GCATCTTAGGGATGGTGGCAG	0.498													34	49					0	0	0.00375469	0	0
DARC	2532	broad.mit.edu	37	1	159175916	159175916	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:159175916G>A	uc001fto.2	+	2	927	c.687G>A	c.(685-687)AAG>AAA	p.K229K	DARC_uc001ftp.3_Silent_p.K231K	NM_002036	NP_002027	Q16570	DUFFY_HUMAN	Duffy blood group antigen isoform b	229	Cytoplasmic (Potential).				defense response	integral to membrane|plasma membrane	C-C chemokine binding|chemokine receptor activity			ovary(1)|lung(1)	2	all_hematologic(112;0.0429)					TTGGAGCCAAGGGGCTGAAGA	0.542													19	74					0	0	0.00229938	0	0
DARC	2532	broad.mit.edu	37	1	159176102	159176102	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:159176102C>T	uc001fto.2	+	2	1113	c.873C>T	c.(871-873)GCC>GCT	p.A291A	DARC_uc001ftp.3_Silent_p.A293A	NM_002036	NP_002027	Q16570	DUFFY_HUMAN	Duffy blood group antigen isoform b	291	Helical; Name=7; (Potential).				defense response	integral to membrane|plasma membrane	C-C chemokine binding|chemokine receptor activity			ovary(1)|lung(1)	2	all_hematologic(112;0.0429)					TGGCAGAAGCCCTGGCAATTT	0.597													164	137					0	0	0.00361006	0	0
IGSF9	57549	broad.mit.edu	37	1	159904552	159904552	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:159904552G>A	uc001fur.2	-	7	932	c.734C>T	c.(733-735)TCA>TTA	p.S245L	IGSF9_uc001fuq.2_Missense_Mutation_p.S245L|IGSF9_uc001fup.2_5'Flank	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	245	Ig-like 3.|Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			GCAGGCCAATGAAACATCCTG	0.567													14	57					0	0	0.00185496	0	0
ATP1A2	477	broad.mit.edu	37	1	160105280	160105280	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:160105280G>A	uc001fvc.2	+	16	2304	c.2172G>A	c.(2170-2172)AAG>AAA	p.K724K	ATP1A2_uc001fvb.2_Silent_p.K724K|ATP1A2_uc001fvd.2_Silent_p.K460K	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	724	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			CATTGAAGAAGGCTGACATTG	0.582													17	96					0	0	0.000958276	0	0
ATP1A2	477	broad.mit.edu	37	1	160105660	160105660	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:160105660C>T	uc001fvc.2	+	17	2448	c.2316C>T	c.(2314-2316)TCC>TCT	p.S772S	ATP1A2_uc001fvb.2_Silent_p.S772S|ATP1A2_uc001fvd.2_Silent_p.S508S	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	772	Helical; (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			TGAAGAAATCCATCGCCTACA	0.567													24	100					0	0	0.00332997	0	0
LY9	4063	broad.mit.edu	37	1	160793326	160793326	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:160793326C>T	uc001fwu.2	+	8	1620	c.1570C>T	c.(1570-1572)CCT>TCT	p.P524S	LY9_uc001fwv.2_Missense_Mutation_p.P510S|LY9_uc001fww.2_Missense_Mutation_p.P434S|LY9_uc001fwx.2_Missense_Mutation_p.P434S|LY9_uc001fwy.1_Missense_Mutation_p.P322S|LY9_uc001fwz.2_Missense_Mutation_p.P162S	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	524	Cytoplasmic (Potential).				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			TCCCCTCAGGCCTGCCAGGCA	0.562													17	47					0	0	0.000958276	0	0
LY9	4063	broad.mit.edu	37	1	160797565	160797565	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:160797565C>T	uc001fwu.2	+	10	1977	c.1927C>T	c.(1927-1929)CTT>TTT	p.L643F	LY9_uc001fwv.2_Missense_Mutation_p.L629F|LY9_uc001fww.2_Missense_Mutation_p.L553F|LY9_uc001fwx.2_Missense_Mutation_p.L530F|LY9_uc001fwz.2_Missense_Mutation_p.L258F	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	643	Cytoplasmic (Potential).				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			ACAGAATGATCTTGAGATTCC	0.473													58	307					0	0	0.00361006	0	0
ITLN1	55600	broad.mit.edu	37	1	160854650	160854650	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:160854650G>A	uc001fxc.2	-	2	134	c.18C>T	c.(16-18)TTC>TTT	p.F6F		NM_017625	NP_060095	Q8WWA0	ITLN1_HUMAN	intelectin precursor	6					positive regulation of glucose import|positive regulation of protein phosphorylation|response to nematode|signal transduction	anchored to membrane|brush border membrane|extracellular region|membrane raft	receptor binding|sugar binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)	7	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			GAAACAGCAGGAAGCTGAGTT	0.507													39	198					0	0	0.00195071	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161018182	161018182	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:161018182C>T	uc001fxl.2	-	12	2975	c.2629G>A	c.(2629-2631)GAG>AAG	p.E877K	USF1_uc001fxi.2_5'Flank|USF1_uc001fxj.2_5'Flank|ARHGAP30_uc001fxk.2_Intron|ARHGAP30_uc001fxm.2_Missense_Mutation_p.E723K|ARHGAP30_uc009wtx.2_Missense_Mutation_p.E550K	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	877	Glu-rich.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			GGATTGCCCTCTTTGGCACAG	0.582													16	88					0	0	0.00400662	0	0
USP21	27005	broad.mit.edu	37	1	161130441	161130441	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:161130441C>T	uc010pke.1	+	3	388	c.11C>T	c.(10-12)GCC>GTC	p.A4V	USP21_uc010pkc.1_Missense_Mutation_p.A4V|USP21_uc010pkd.1_Missense_Mutation_p.A4V|USP21_uc010pkf.1_Missense_Mutation_p.A4V	NM_001014443	NP_001014443	Q9UK80	UBP21_HUMAN	ubiquitin-specific protease 21	4					histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	nucleus	metal ion binding|NEDD8-specific protease activity|protein binding|transcription coactivator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|lung(1)|prostate(1)|breast(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			ATGCCCCAGGCCTCTGAGCAC	0.602													20	77					0	0	0.00188189	0	0
ADAMTS4	9507	broad.mit.edu	37	1	161163089	161163089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:161163089G>A	uc001fyt.3	-	7	2253	c.1825C>T	c.(1825-1827)CGC>TGC	p.R609C		NM_005099	NP_005090	O75173	ATS4_HUMAN	ADAM metallopeptidase with thrombospondin type 1	609	Cys-rich.				proteolysis|skeletal system development	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|protease binding|zinc ion binding			ovary(4)|central_nervous_system(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			CCTGTGTAGCGAGGAACCCAG	0.642													16	72					0	0	0.000566183	0	0
SDHC	6391	broad.mit.edu	37	1	161298193	161298193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:161298193C>T	uc001gag.2	+	3	115	c.85C>T	c.(85-87)CCT>TCT	p.P29S	SDHC_uc001gai.2_Missense_Mutation_p.P29S|SDHC_uc001gaj.2_Intron|SDHC_uc001gak.2_Intron|SDHC_uc001gah.2_Intron	NM_003001	NP_002992	Q99643	C560_HUMAN	succinate dehydrogenase complex, subunit C	29					respiratory electron transport chain|transport|tricarboxylic acid cycle	integral to membrane|mitochondrial respiratory chain complex II|plasma membrane succinate dehydrogenase complex	electron carrier activity|heme binding|succinate dehydrogenase activity				0	all_cancers(52;6.96e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Succinic acid(DB00139)	TAGTGCTGTTCCTTTGGGAAC	0.368			Mis|N|F			paraganglioma|pheochromocytoma			Familial_Paragangliomas|Carney-Stratakis_syndrome				63	120					0	0	0.00361006	0	0
PBX1	5087	broad.mit.edu	37	1	164532502	164532502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:164532502G>A	uc001gct.2	+	2	477	c.219G>A	c.(217-219)ATG>ATA	p.M73I	PBX1_uc010pku.1_Missense_Mutation_p.M73I|PBX1_uc010pkv.1_Intron|PBX1_uc001gcs.2_Missense_Mutation_p.M73I	NM_002585	NP_002576	P40424	PBX1_HUMAN	pre-B-cell leukemia homeobox 1	73					negative regulation of sequence-specific DNA binding transcription factor activity|sex differentiation|steroid biosynthetic process	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription factor binding		EWSR1/PBX1(3)	soft_tissue(3)|lung(1)|skin(1)	5						GCCACAGAATGAAGCCTGCCT	0.368			T	TCF3|EWSR1	pre B-ALL|myoepithelioma								22	120					0	0	0.00278032	0	0
PBX1	5087	broad.mit.edu	37	1	164761828	164761828	+	Silent	SNP	G	A	A	rs147201088		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:164761828G>A	uc001gct.2	+	3	621	c.363G>A	c.(361-363)GAG>GAA	p.E121E	PBX1_uc010pku.1_Silent_p.E121E|PBX1_uc010pkv.1_Silent_p.E38E|PBX1_uc001gcs.2_Silent_p.E121E|PBX1_uc010pkw.1_Silent_p.E11E	NM_002585	NP_002576	P40424	PBX1_HUMAN	pre-B-cell leukemia homeobox 1	121					negative regulation of sequence-specific DNA binding transcription factor activity|sex differentiation|steroid biosynthetic process	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription factor binding		EWSR1/PBX1(3)	soft_tissue(3)|lung(1)|skin(1)	5						CGGGGCCTGAGAAGGGCGGAG	0.498			T	TCF3|EWSR1	pre B-ALL|myoepithelioma								54	32					0	0	0.00361006	0	0
RXRG	6258	broad.mit.edu	37	1	165380213	165380213	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:165380213G>A	uc001gda.2	-	5	1056	c.756C>T	c.(754-756)TCC>TCT	p.S252S		NM_006917	NP_008848	P48443	RXRG_HUMAN	retinoid X receptor, gamma isoform a	252	Hinge.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tretinoin(DB00755)	TGTCACCATAGGATTCTGTCT	0.463													14	63					0	0	0.00316338	0	0
POGK	57645	broad.mit.edu	37	1	166818322	166818322	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:166818322C>T	uc001gdt.1	+	5	626	c.506C>T	c.(505-507)CCC>CTC	p.P169L	POGK_uc010ple.1_Missense_Mutation_p.P84L|POGK_uc010plf.1_Missense_Mutation_p.P51L	NM_017542	NP_060012	Q9P215	POGK_HUMAN	pogo transposable element with KRAB domain	169					multicellular organismal development|regulation of transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1						GAGGGGTACCCCTTCTACATG	0.582													33	29					0	0	0.00209593	0	0
MAEL	84944	broad.mit.edu	37	1	166963267	166963267	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:166963267G>A	uc001gdy.1	+	5	555	c.484G>A	c.(484-486)GAA>AAA	p.E162K	MAEL_uc001gdz.1_Missense_Mutation_p.E131K|MAEL_uc009wvf.1_RNA	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	162					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						TATTATAGGTGAAATTCCACG	0.348													7	36					0	0	0.000274275	0	0
DUSP27	92235	broad.mit.edu	37	1	167095448	167095448	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:167095448C>T	uc001geb.1	+	5	1080	c.1080C>T	c.(1078-1080)CTC>CTT	p.L360L		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	360					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						GGCAGGGCCTCCTCTCAGACA	0.652													4	28					0	0	0.000602214	0	0
POU2F1	5451	broad.mit.edu	37	1	167385027	167385027	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:167385027A>G	uc001gec.2	+	17	2374	c.2212A>G	c.(2212-2214)ACC>GCC	p.T738A	POU2F1_uc001ged.2_Missense_Mutation_p.T736A|POU2F1_uc001gee.2_Missense_Mutation_p.T738A|POU2F1_uc010plh.1_Missense_Mutation_p.T675A|POU2F1_uc001gef.2_Missense_Mutation_p.T750A|POU2F1_uc001geg.2_Intron	NM_002697	NP_002688	P14859	PO2F1_HUMAN	POU class 2 homeobox 1	738					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|skin(2)|breast(1)	5						CACCACCACCACCGCCTCCAA	0.582													5	172					0	0	0.000602214	0	0
ADCY10	55811	broad.mit.edu	37	1	167779004	167779004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:167779004C>T	uc001ger.2	-	33	5042	c.4744G>A	c.(4744-4746)GAA>AAA	p.E1582K	ADCY10_uc009wvj.2_RNA|ADCY10_uc009wvk.2_Missense_Mutation_p.E1490K|ADCY10_uc010plj.1_Missense_Mutation_p.E1429K	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	1582					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						ACAATTTTTTCCCATGATGGG	0.388													71	46					0	0	0.00361006	0	0
FMO3	2328	broad.mit.edu	37	1	171083175	171083175	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:171083175G>A	uc001ghi.2	+	7	967	c.856G>A	c.(856-858)GAT>AAT	p.D286N	FMO3_uc001ghh.2_Missense_Mutation_p.D286N|FMO3_uc010pmb.1_Missense_Mutation_p.D266N|FMO3_uc010pmc.1_Missense_Mutation_p.D223N	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	286					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TGTATTTAACGATGAGCTCCC	0.408													6	43					0	0	0.00198382	0	0
FMO2	2327	broad.mit.edu	37	1	171168578	171168578	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:171168578G>A	uc001ghk.1	+	5	695	c.578G>A	c.(577-579)GGA>GAA	p.G193E	FMO2_uc010pmd.1_Intron	NM_001460	NP_001451	Q99518	FMO2_HUMAN	flavin containing monooxygenase 2	193	NADP (Potential).				drug metabolic process|NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|host cell microsome|integral to membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					ATTGGAATGGGAAACTCAGGC	0.493													12	100					0	0	0.000958276	0	0
BAT2L2	23215	broad.mit.edu	37	1	171535487	171535487	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:171535487C>T	uc010pmg.1	+	21	6493	c.6227C>T	c.(6226-6228)TCT>TTT	p.S2076F	BAT2L2_uc010pmh.1_Missense_Mutation_p.S1053F|BAT2L2_uc010pmi.1_5'UTR	NM_015172	NP_055987	Q9Y520	PRC2C_HUMAN	HBxAg transactivated protein 2	2076							protein C-terminus binding				0						TCGGAAAAATCTGCTGACAAA	0.413													16	7					0	0	0.00316338	0	0
VAMP4	8674	broad.mit.edu	37	1	171679929	171679929	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:171679929T>A	uc001ghx.1	-	5	404	c.190A>T	c.(190-192)ATT>TTT	p.I64F	VAMP4_uc001ghw.1_RNA|VAMP4_uc001ghy.1_Missense_Mutation_p.I63F|VAMP4_uc001ghv.1_5'Flank	NM_003762	NP_003753	O75379	VAMP4_HUMAN	vesicle-associated membrane protein 4	64	Cytoplasmic (Potential).|v-SNARE coiled-coil homology.				vesicle-mediated transport	endosome|Golgi membrane|integral to membrane|lysosome					0	all_cancers(6;1.42e-10)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					ATGACATCAATAACTTCATCC	0.308													19	71					0	0	0.000958276	0	0
DNM3	26052	broad.mit.edu	37	1	172277953	172277953	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:172277953G>A	uc001gie.2	+	16	2031	c.1855G>A	c.(1855-1857)GCT>ACT	p.A619T	DNM3_uc009wwb.2_Missense_Mutation_p.A619T|DNM3_uc001gif.2_Missense_Mutation_p.A619T	NM_015569	NP_056384	Q9UQ16	DYN3_HUMAN	dynamin 3 isoform a	629					endocytosis|filopodium assembly|synapse assembly	dendritic spine|microtubule|perinuclear region of cytoplasm|postsynaptic density	GTP binding|GTPase activity|protein binding			breast(1)	1						TCTACTAAGAGCTGGGGTCTA	0.368													8	49					0	0	0.00307968	0	0
ANKRD45	339416	broad.mit.edu	37	1	173628299	173628299	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:173628299C>T	uc001gja.1	-	2	320	c.259G>A	c.(259-261)GCT>ACT	p.A87T	ANKRD45_uc001gjb.3_Missense_Mutation_p.A87T	NM_198493	NP_940895	Q5TZF3	ANR45_HUMAN	ankyrin repeat domain 45	103	ANK 1.										0						CTTTGCCCAGCCATGCAAGCT	0.403													32	134					0	0	0.0024448	0	0
TNN	63923	broad.mit.edu	37	1	175087766	175087766	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:175087766C>A	uc001gkl.1	+	11	2569	c.2456C>A	c.(2455-2457)CCG>CAG	p.P819Q		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	819	Fibronectin type-III 7.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		TCCTGGGACCCGGTGCAGGCC	0.542													5	78					0.00307968	0.00834117	0.00307968	1	0
PAPPA2	60676	broad.mit.edu	37	1	176525557	176525557	+	Silent	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:176525557C>A	uc001gkz.2	+	2	1263	c.99C>A	c.(97-99)TCC>TCA	p.S33S	PAPPA2_uc001gky.1_Silent_p.S33S|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	33					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GCAAGAAATCCTTGGTTGAGA	0.527													52	79					2.29192e-23	6.29777e-23	0.00361006	1	0
ASTN1	460	broad.mit.edu	37	1	176903372	176903372	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:176903372C>T	uc001glc.2	-	16	2799	c.2587G>A	c.(2587-2589)GGC>AGC	p.G863S	ASTN1_uc001glb.1_Missense_Mutation_p.G863S|ASTN1_uc001gld.1_Missense_Mutation_p.G863S	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	871					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						TCCTCAAAGCCGTAGATAGCT	0.527													36	23					0	0	0.00327116	0	0
FAM5B	57795	broad.mit.edu	37	1	177249834	177249834	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:177249834G>A	uc001glf.2	+	8	1834	c.1522G>A	c.(1522-1524)GAC>AAC	p.D508N	FAM5B_uc001glg.2_Missense_Mutation_p.D403N	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	508						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						GCTGGAGACAGACTTGCAGGA	0.597													26	26					0	0	0.001512	0	0
ABL2	27	broad.mit.edu	37	1	179079462	179079462	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:179079462C>A	uc001gmj.3	-	11	2067	c.1780G>T	c.(1780-1782)GGG>TGG	p.G594W	ABL2_uc010pnf.1_Missense_Mutation_p.G594W|ABL2_uc010png.1_Missense_Mutation_p.G573W|ABL2_uc010pnh.1_Missense_Mutation_p.G573W|ABL2_uc001gmg.3_Missense_Mutation_p.G579W|ABL2_uc001gmi.3_Missense_Mutation_p.G579W|ABL2_uc001gmh.3_Missense_Mutation_p.G558W|ABL2_uc010pne.1_Missense_Mutation_p.G558W	NM_007314	NP_009298	P42684	ABL2_HUMAN	arg tyrosine kinase isoform b	594					axon guidance|cell adhesion|peptidyl-tyrosine phosphorylation|positive regulation of oxidoreductase activity|signal transduction	cytoskeleton|cytosol	ATP binding|magnesium ion binding|manganese ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(8)|breast(3)|ovary(2)|central_nervous_system(1)	14					Adenosine triphosphate(DB00171)|Dasatinib(DB01254)	TCTTGTGCCCCTTCAATGTTC	0.468			T	ETV6	AML								14	468					0.00074312	0.00202067	0.00074312	1	0
C1orf125	126859	broad.mit.edu	37	1	179414189	179414189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:179414189G>A	uc001gmo.2	+	16	1775	c.1648G>A	c.(1648-1650)GAA>AAA	p.E550K	C1orf125_uc009wxg.2_Intron|C1orf125_uc001gmn.1_Missense_Mutation_p.E338K|C1orf125_uc010pnl.1_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.E550K	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	550											0						ACATTTACAGGAAAACTGGGC	0.378													61	48					0	0	0.00361006	0	0
CACNA1E	777	broad.mit.edu	37	1	181549846	181549846	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:181549846C>T	uc001gow.2	+	6	1050	c.885C>T	c.(883-885)ATC>ATT	p.I295I	CACNA1E_uc009wxr.2_Silent_p.I202I|CACNA1E_uc009wxs.2_Silent_p.I202I	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	295	I.|Extracellular (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TTGATAACATCCTTTTTGCTG	0.547													20	72					0	0	0.000958276	0	0
CACNA1E	777	broad.mit.edu	37	1	181702848	181702848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:181702848C>T	uc001gow.2	+	21	3389	c.3224C>T	c.(3223-3225)CCC>CTC	p.P1075L	CACNA1E_uc009wxs.2_Missense_Mutation_p.P963L|CACNA1E_uc001gox.1_Missense_Mutation_p.P301L|CACNA1E_uc009wxt.2_Missense_Mutation_p.P301L	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1075	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GTCGCCATCCCCGACGTGGAC	0.652													8	43					0	0	0.000274275	0	0
CACNA1E	777	broad.mit.edu	37	1	181726091	181726091	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:181726091G>A	uc001gow.2	+	30	4323	c.4158G>A	c.(4156-4158)GAG>GAA	p.E1386E	CACNA1E_uc009wxs.2_Silent_p.E1274E|CACNA1E_uc001gox.1_Silent_p.E612E|CACNA1E_uc009wxt.2_Silent_p.E612E	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1386	Extracellular (Potential).|III.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						ATGTGACAGAGGAAGACCGAG	0.488													45	124					0	0	0.00361006	0	0
CACNA1E	777	broad.mit.edu	37	1	181767489	181767489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:181767489G>A	uc001gow.2	+	47	6497	c.6332G>A	c.(6331-6333)AGA>AAA	p.R2111K	CACNA1E_uc009wxs.2_Missense_Mutation_p.R1999K|CACNA1E_uc009wxt.2_Missense_Mutation_p.R1380K	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2154	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						ACCCCAAGAAGAAGTCGTCGG	0.592													18	108					0	0	0.00121646	0	0
CACNA1E	777	broad.mit.edu	37	1	181767716	181767716	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:181767716G>A	uc001gow.2	+	47	6724	c.6559G>A	c.(6559-6561)GAG>AAG	p.E2187K	CACNA1E_uc009wxs.2_Missense_Mutation_p.E2075K|CACNA1E_uc009wxt.2_Missense_Mutation_p.E1456K	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2230	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CTACATCTCCGAGCCCTACTT	0.612													11	20					0	0	0.000978159	0	0
C1orf14	81626	broad.mit.edu	37	1	182908376	182908376	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:182908376C>T	uc001gpu.2	-	5	1296	c.1011G>A	c.(1009-1011)TGG>TGA	p.W337*	C1orf14_uc001gpv.2_Nonsense_Mutation_p.W218*|C1orf14_uc010pnz.1_Nonsense_Mutation_p.W195*|C1orf14_uc001gpw.2_Nonsense_Mutation_p.W57*	NM_030933	NP_112195	Q9BZQ2	SHP1L_HUMAN	chromosome 1 open reading frame 14	409											0				Colorectal(1306;1.64e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00267)		AGTATTTTTTCCAGCATTCAA	0.358													60	48					0	0	0.00361006	0	0
C1orf14	81626	broad.mit.edu	37	1	182909513	182909513	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:182909513C>T	uc001gpu.2	-	3	1006	c.721G>A	c.(721-723)GGA>AGA	p.G241R	C1orf14_uc001gpv.2_Missense_Mutation_p.G122R|C1orf14_uc010pnz.1_Missense_Mutation_p.G99R|C1orf14_uc001gpw.2_5'UTR	NM_030933	NP_112195	Q9BZQ2	SHP1L_HUMAN	chromosome 1 open reading frame 14	313											0				Colorectal(1306;1.64e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00267)		GTATCTTGTCCCTCAACAGGA	0.353													29	114					0	0	0.00283554	0	0
LAMC1	3915	broad.mit.edu	37	1	183093967	183093967	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:183093967T>G	uc001gpy.3	+	14	2860	c.2603T>G	c.(2602-2604)TTT>TGT	p.F868C		NM_002293	NP_002284	P11047	LAMC1_HUMAN	laminin, gamma 1 precursor	868	Laminin EGF-like 8.				axon guidance|cell migration|endoderm development|extracellular matrix disassembly|hemidesmosome assembly|positive regulation of epithelial cell proliferation|protein complex assembly|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	extracellular matrix structural constituent			ovary(3)|large_intestine(1)|kidney(1)	5					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AAAGACGGATTTTTTGGAAAT	0.453													29	46					0	0	0.001512	0	0
GLT25D2	23127	broad.mit.edu	37	1	183938538	183938538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:183938538G>A	uc001gqr.2	-	5	1069	c.697C>T	c.(697-699)CCC>TCC	p.P233S	GLT25D2_uc010poj.1_Missense_Mutation_p.P233S|GLT25D2_uc001gqs.2_Missense_Mutation_p.P113S	NM_015101	NP_055916	Q8IYK4	GT252_HUMAN	glycosyltransferase 25 domain containing 2	233					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity			ovary(1)|breast(1)	2						TGGACCATGGGGACGGGGAAG	0.522													22	102					0	0	0.00332997	0	0
HMCN1	83872	broad.mit.edu	37	1	186014931	186014931	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:186014931A>G	uc001grq.1	+	41	6645	c.6416A>G	c.(6415-6417)AAA>AGA	p.K2139R		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	2139	Ig-like C2-type 19.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						ACTTGGTTAAAAGACGGCCAC	0.393													34	28					0	0	0.0024448	0	0
HMCN1	83872	broad.mit.edu	37	1	186043883	186043883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:186043883C>T	uc001grq.1	+	53	8379	c.8150C>T	c.(8149-8151)TCC>TTC	p.S2717F		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	2717	Ig-like C2-type 25.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						CCCCTTAAATCCGATGATCAT	0.353													13	27					0	0	0.00316338	0	0
TPR	7175	broad.mit.edu	37	1	186294972	186294972	+	Silent	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:186294972A>G	uc001grv.2	-	42	6333	c.6036T>C	c.(6034-6036)ACT>ACC	p.T2012T		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	2012					carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		TACCTGGATCAGTCCCATCAC	0.299			T	NTRK1	papillary thyroid								34	27					0	0	0.00327116	0	0
PTGS2	5743	broad.mit.edu	37	1	186645797	186645797	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:186645797C>T	uc001gsb.2	-	7	909	c.772G>A	c.(772-774)GAG>AAG	p.E258K	PTGS2_uc009wyo.2_Missense_Mutation_p.E105K	NM_000963	NP_000954	P35354	PGH2_HUMAN	prostaglandin-endoperoxide synthase 2 precursor	258					cellular component movement|cyclooxygenase pathway|hormone biosynthetic process|positive regulation of brown fat cell differentiation|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of fever generation|positive regulation of fibroblast growth factor production|positive regulation of nitric oxide biosynthetic process|positive regulation of platelet-derived growth factor production|positive regulation of prostaglandin biosynthetic process|positive regulation of transforming growth factor-beta production|positive regulation vascular endothelial growth factor production|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome|neuron projection|nucleus	enzyme binding|heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|central_nervous_system(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Carprofen(DB00821)|Celecoxib(DB00482)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Epoprostenol(DB01240)|Etodolac(DB00749)|Etoricoxib(DB01628)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ginseng(DB01404)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lenalidomide(DB00480)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mesalazine(DB00244)|Nabumetone(DB00461)|Naproxen(DB00788)|Oxaprozin(DB00991)|Phenylbutazone(DB00812)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Thalidomide(DB01041)|Tiaprofenic acid(DB01600)|Tolmetin(DB00500)|Valdecoxib(DB00580)	TAGATCATCTCTGCCTGAGTA	0.413													7	38					0	0	0.00198382	0	0
FAM5C	339479	broad.mit.edu	37	1	190067725	190067725	+	Missense_Mutation	SNP	G	A	A	rs146145589		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:190067725G>A	uc001gse.1	-	8	1956	c.1724C>T	c.(1723-1725)CCC>CTC	p.P575L	FAM5C_uc010pot.1_Missense_Mutation_p.P473L	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	575						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GCCTCCGAAGGGATTGACATA	0.463													54	107					0	0	0.00361006	0	0
KCNT2	343450	broad.mit.edu	37	1	196205198	196205198	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:196205198C>T	uc001gtd.1	-	27	3274	c.3214G>A	c.(3214-3216)GAA>AAA	p.E1072K	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.E1005K|KCNT2_uc001gtf.1_Missense_Mutation_p.E1048K|KCNT2_uc001gtg.1_RNA	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	1072	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						TCATTCATTTCATCTAGAAGA	0.333													50	96					0	0	0.00361006	0	0
KCNT2	343450	broad.mit.edu	37	1	196448350	196448350	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:196448350T>C	uc001gtd.1	-	5	403	c.343A>G	c.(343-345)AGT>GGT	p.S115G	KCNT2_uc001gte.1_Missense_Mutation_p.S115G|KCNT2_uc001gtf.1_Missense_Mutation_p.S115G|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.S115G|KCNT2_uc009wyv.1_Missense_Mutation_p.S115G	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	115	Helical; Name=Segment S2; (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						TCAAACAGACTTATCAATGCC	0.279													9	46					0	0	0.000978159	0	0
CFH	3075	broad.mit.edu	37	1	196642210	196642210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:196642210C>T	uc001gtj.3	+	2	401	c.161C>T	c.(160-162)CCT>CTT	p.P54L	CFH_uc001gti.3_Missense_Mutation_p.P54L|CFH_uc009wyw.2_Missense_Mutation_p.P54L|CFH_uc009wyx.2_Missense_Mutation_p.P54L	NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	54	Sushi 1.			RP -> IL (in Ref. 5; CAB41739).	complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						AAATGCCGCCCTGGATATAGA	0.403													18	74					0	0	0.00074312	0	0
CFH	3075	broad.mit.edu	37	1	196706692	196706692	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:196706692C>T	uc001gtj.3	+	17	2924	c.2684C>T	c.(2683-2685)ACT>ATT	p.T895I		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	895	Sushi 15.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						GCACATGGGACTAAATTGAGT	0.383													7	36					0	0	0.00198382	0	0
ASPM	259266	broad.mit.edu	37	1	197111575	197111575	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:197111575G>A	uc001gtu.2	-	3	2064	c.1807C>T	c.(1807-1809)CAT>TAT	p.H603Y	ASPM_uc001gtv.2_Missense_Mutation_p.H603Y|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	603					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						GGAGAAAAATGGATTCTTTTG	0.378													38	202					0	0	0.00111076	0	0
CRB1	23418	broad.mit.edu	37	1	197297974	197297974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:197297974G>A	uc001gtz.2	+	2	628	c.493G>A	c.(493-495)GAT>AAT	p.D165N	CRB1_uc010poz.1_Missense_Mutation_p.D96N|CRB1_uc001gty.1_Missense_Mutation_p.D165N|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.D165N|CRB1_uc010ppb.1_Missense_Mutation_p.D165N	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	165	Extracellular (Potential).|EGF-like 4; calcium-binding (Potential).				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CGTGTGCCAGGATGGAATTGA	0.512													6	36					0	0	0.00116845	0	0
ATP6V1G3	127124	broad.mit.edu	37	1	198498223	198498223	+	Silent	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:198498223T>C	uc001gup.2	-	3	277	c.171A>G	c.(169-171)CTA>CTG	p.L57L	ATP6V1G3_uc009wzd.2_Silent_p.L63L|ATP6V1G3_uc001guo.2_3'UTR	NM_133262	NP_573569	Q96LB4	VATG3_HUMAN	ATPase, H+ transporting, lysosomal, V1 subunit	57					cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|plasma membrane|vacuolar proton-transporting V-type ATPase complex	ATPase binding			central_nervous_system(1)	1						TAGATTGTTTTAGTCGAAACT	0.338													7	38					0	0	0.00198382	0	0
NR5A2	2494	broad.mit.edu	37	1	200143153	200143153	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:200143153C>T	uc001gvb.2	+	8	1647	c.1441C>T	c.(1441-1443)CTG>TTG	p.L481L	NR5A2_uc001gvc.2_Silent_p.L435L|NR5A2_uc009wzh.2_Silent_p.L441L|NR5A2_uc010pph.1_Silent_p.L409L	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	481					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					CAATGCCGCCCTGCTGGACTA	0.433													7	21					0	0	0.00198382	0	0
FAM58B	339521	broad.mit.edu	37	1	200183155	200183155	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:200183155C>T	uc009wzi.1	+	1	500	c.464C>T	c.(463-465)TCC>TTC	p.S155F		NM_001105517	NP_001098987	P0C7Q3	FA58B_HUMAN	family with sequence similarity 58 member B	155					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	Prostate(682;0.19)					TACCTGGTTTCCCTCAAGAAC	0.617													43	38					0	0	0.00361006	0	0
KIF21B	23046	broad.mit.edu	37	1	200946498	200946498	+	Silent	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:200946498C>A	uc001gvs.1	-	31	4484	c.4167G>T	c.(4165-4167)TCG>TCT	p.S1389S	KIF21B_uc001gvr.1_Silent_p.S1376S|KIF21B_uc009wzl.1_Silent_p.S1389S|KIF21B_uc010ppn.1_Silent_p.S1376S	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	1389					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						TCACCTGGCCCGAGGACCTGC	0.527													6	121					0.00198382	0.00538272	0.00198382	1	0
KIF21B	23046	broad.mit.edu	37	1	200957646	200957646	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:200957646C>T	uc001gvs.1	-	23	3642	c.3325G>A	c.(3325-3327)GAG>AAG	p.E1109K	KIF21B_uc001gvr.1_Missense_Mutation_p.E1109K|KIF21B_uc009wzl.1_Missense_Mutation_p.E1109K|KIF21B_uc010ppn.1_Missense_Mutation_p.E1109K	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	1109					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						TCTGAGATCTCCTCATCTGTG	0.597													4	15					0	0	0.000602214	0	0
KIF21B	23046	broad.mit.edu	37	1	200972830	200972830	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:200972830G>A	uc001gvs.1	-	8	1413	c.1096C>T	c.(1096-1098)CGG>TGG	p.R366W	KIF21B_uc001gvr.1_Missense_Mutation_p.R366W|KIF21B_uc009wzl.1_Missense_Mutation_p.R366W|KIF21B_uc010ppn.1_Missense_Mutation_p.R366W|KIF21B_uc001gvt.1_Missense_Mutation_p.R224W	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	366					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						TTGCGGGCCCGATTGGCATAT	0.552													44	68					0	0	0.00321405	0	0
CACNA1S	779	broad.mit.edu	37	1	201043666	201043666	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:201043666C>T	uc001gvv.2	-	14	2258	c.2031G>A	c.(2029-2031)AAG>AAA	p.K677K		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	677	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TCTCCTCAGCCTTGGCCTTCT	0.572													8	39					0	0	0.00307968	0	0
PKP1	5317	broad.mit.edu	37	1	201294069	201294069	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:201294069G>A	uc001gwd.2	+	12	2149	c.1898G>A	c.(1897-1899)GGG>GAG	p.G633E	PKP1_uc001gwe.2_Missense_Mutation_p.G612E|PKP1_uc009wzm.2_Missense_Mutation_p.G220E	NM_000299	NP_000290	Q13835	PKP1_HUMAN	plakophilin 1 isoform 1b	633	ARM 8.				cell adhesion|cellular component disassembly involved in apoptosis|multicellular organismal development	desmosome|intermediate filament|nucleus	intermediate filament binding|signal transducer activity|structural constituent of epidermis			ovary(2)	2						CCTCTCCCAGGGAACCAGGTG	0.612													30	201					0	0	0.000953801	0	0
TNNI1	7135	broad.mit.edu	37	1	201384368	201384368	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:201384368G>A	uc010ppq.1	-	4	123	c.30C>T	c.(28-30)ATC>ATT	p.I10I	TNNI1_uc001gwo.1_RNA|TNNI1_uc001gwp.2_5'UTR	NM_003281	NP_003272	P19237	TNNI1_HUMAN	troponin I, skeletal, slow	10	Involved in binding TNC.				muscle filament sliding|regulation of striated muscle contraction	cytosol|troponin complex	actin binding|tropomyosin binding				0						GGGAGGCAGTGATCTTGGGTT	0.587													9	46					0	0	0.000442599	0	0
NAV1	89796	broad.mit.edu	37	1	201786325	201786325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:201786325C>T	uc001gwu.2	+	28	5788	c.5441C>T	c.(5440-5442)CCC>CTC	p.P1814L	NAV1_uc001gwx.2_Missense_Mutation_p.P1423L	NM_020443	NP_065176	Q8NEY1	NAV1_HUMAN	neuron navigator 1	1817					cell differentiation|nervous system development	cytoplasm|microtubule	nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(3)|ovary(1)	4						CTGCCCCCACCCACCGTGGGC	0.582													11	57					0	0	0.000673444	0	0
LGR6	59352	broad.mit.edu	37	1	202287144	202287144	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:202287144C>T	uc001gxu.2	+	18	1713	c.1713C>T	c.(1711-1713)ATC>ATT	p.I571I	LGR6_uc001gxv.2_Silent_p.I519I|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Silent_p.I432I	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	571	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						TGTGGGCCATCGTGTTGCTCT	0.612													25	132					0	0	0.00395357	0	0
KDM5B	10765	broad.mit.edu	37	1	202724528	202724528	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:202724528G>A	uc001gyf.2	-	11	1525	c.1409C>T	c.(1408-1410)TCT>TTT	p.S470F	KDM5B_uc009xag.2_Missense_Mutation_p.S506F|KDM5B_uc001gyg.1_Missense_Mutation_p.S312F	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	470	JmjC.				negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						TGCAAGGACAGACTGCTCCAT	0.393													37	215					0	0	0.00170553	0	0
PPFIA4	8497	broad.mit.edu	37	1	203024737	203024737	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:203024737C>T	uc001gyz.2	+	3	1082	c.489C>T	c.(487-489)TCC>TCT	p.S163S	PPFIA4_uc009xaj.2_Silent_p.S794S|PPFIA4_uc010pqf.1_Silent_p.S376S|PPFIA4_uc001gza.2_Silent_p.S163S|PPFIA4_uc001gzb.1_5'Flank	NM_015053	NP_055868	O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f	163					cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						GCGGCCGCTCCACACCTAAGC	0.657													16	55					0	0	0.00074312	0	0
MYOG	4656	broad.mit.edu	37	1	203054895	203054895	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:203054895G>A	uc001gzd.2	-	1	483	c.195C>T	c.(193-195)TGC>TGT	p.C65C		NM_002479	NP_002470	P15173	MYOG_HUMAN	myogenin	65					muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter	transcription factor complex	E-box binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity			skin(2)	2						CCCACGGCAGGCACTGGCCTG	0.682													25	107					0	0	0.00127121	0	0
LAX1	54900	broad.mit.edu	37	1	203743613	203743613	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:203743613G>A	uc001haa.2	+	5	1411	c.1001G>A	c.(1000-1002)TGT>TAT	p.C334Y	LAX1_uc010pql.1_Missense_Mutation_p.C318Y|LAX1_uc001hab.2_Missense_Mutation_p.C258Y	NM_017773	NP_060243	Q8IWV1	LAX1_HUMAN	lymphocyte transmembrane adaptor 1 isoform a	334	Cytoplasmic (Potential).				B cell activation|immune response|inactivation of MAPK activity|intracellular signal transduction|negative regulation of T cell activation	Golgi apparatus|integral to membrane|plasma membrane	protein kinase binding|SH2 domain binding			central_nervous_system(2)	2	all_cancers(21;0.0915)		BRCA - Breast invasive adenocarcinoma(75;0.109)			CATGTCCAATGTGTCAAAAGG	0.478													53	99					0	0	0.00361006	0	0
REN	5972	broad.mit.edu	37	1	204128574	204128574	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:204128574G>A	uc001haq.2	-	5	686	c.642C>T	c.(640-642)ATC>ATT	p.I214I		NM_000537	NP_000528	P00797	RENI_HUMAN	renin preproprotein	214					angiotensin maturation|regulation of MAPKKK cascade	extracellular space|membrane	aspartic-type endopeptidase activity			skin(3)|central_nervous_system(1)	4	all_cancers(21;0.00965)|Breast(84;0.116)|all_epithelial(62;0.157)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.109)		Aliskiren(DB01258)|Remikiren(DB00212)	CCCCTTGGGAGATGATGTTGT	0.562													17	79					0	0	0.00121646	0	0
DSTYK	25778	broad.mit.edu	37	1	205116758	205116758	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:205116758G>A	uc001hbw.2	-	13	2782	c.2718C>T	c.(2716-2718)CTC>CTT	p.L906L	DSTYK_uc001hbx.2_Silent_p.L861L	NM_015375	NP_056190	Q6XUX3	DUSTY_HUMAN	receptor interacting protein kinase 5 isoform 1	906	Protein kinase.					cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(1)	1						TGATGCCCTGGAGCATGGGCT	0.507													55	167					0	0	0.00361006	0	0
LEMD1	93273	broad.mit.edu	37	1	205350880	205350880	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:205350880C>T	uc001hcj.1	-	6	554	c.452G>A	c.(451-453)GGT>GAT	p.G151D	LEMD1_uc001hci.1_Missense_Mutation_p.V104I|LEMD1_uc001hck.1_RNA|LEMD1_uc001hcl.1_Missense_Mutation_p.G110D|LEMD1_uc001hcm.1_RNA|LEMD1_uc001hcn.1_RNA|uc001hch.1_Intron			Q68G75	LEMD1_HUMAN	RecName: Full=LEM domain-containing protein 1;          Short=LEMP-1; AltName: Full=Cancer/testis antigen 50;          Short=CT50;	151						integral to membrane|nuclear envelope					0	Breast(84;0.247)		BRCA - Breast invasive adenocarcinoma(75;0.0938)			CACTGGGAAACCTTCTTCTCT	0.463													52	218					0	0	0.00361006	0	0
CDK18	5129	broad.mit.edu	37	1	205499810	205499810	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:205499810G>A	uc001hcr.2	+	15	1676	c.1457G>A	c.(1456-1458)CGA>CAA	p.R486Q	CDK18_uc001hcp.2_Missense_Mutation_p.R456Q|CDK18_uc001hcq.2_Missense_Mutation_p.R456Q|CDK18_uc010prj.1_Missense_Mutation_p.R367Q|CDK18_uc001hcs.2_Missense_Mutation_p.R367Q|CDK18_uc001hct.2_RNA	NM_212503	NP_997668	Q07002	CDK18_HUMAN	PCTAIRE protein kinase 3 isoform a	454							ATP binding|cyclin-dependent protein kinase activity|protein binding|signal transducer activity			stomach(2)	2						CCAGGCTACCGAGGCTTGGCC	0.632													7	34					0	0	0.000442599	0	0
MAPKAPK2	9261	broad.mit.edu	37	1	206905044	206905044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:206905044G>A	uc001hem.1	+	8	1238	c.952G>A	c.(952-954)GAG>AAG	p.E318K	MAPKAPK2_uc001hel.1_Missense_Mutation_p.E318K	NM_032960	NP_116584	P49137	MAPK2_HUMAN	mitogen-activated protein kinase-activated	318	Protein kinase.				activation of MAPK activity|hormone biosynthetic process|innate immune response|leukotriene biosynthetic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|prostanoid metabolic process|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|signal transducer activity				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.211)			GACCATCACCGAGTTTATGAA	0.562													46	192					0	0	0.00361006	0	0
IL20	50604	broad.mit.edu	37	1	207039325	207039325	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:207039325G>A	uc001her.2	+	1	172	c.128G>A	c.(127-129)CGA>CAA	p.R43Q	IL20_uc010pry.1_Missense_Mutation_p.R114Q|IL20_uc009xby.2_Missense_Mutation_p.R43Q	NM_018724	NP_061194	Q9NYY1	IL20_HUMAN	interleukin 20 precursor	43					positive regulation of keratinocyte differentiation|positive regulation of tyrosine phosphorylation of Stat3 protein|regulation of inflammatory response	extracellular space	cytokine activity|interleukin-20 receptor binding				0	Breast(84;0.201)			OV - Ovarian serous cystadenocarcinoma(81;0.00459)		CAGGAAATACGAAATGGATTT	0.473													29	69					0	0	0.001512	0	0
PIGR	5284	broad.mit.edu	37	1	207105058	207105058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:207105058C>T	uc001hez.2	-	9	2282	c.2098G>A	c.(2098-2100)GCC>ACC	p.A700T	PIGR_uc009xbz.2_Missense_Mutation_p.A700T	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	700	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						ATCGAAGAGGCTCCCATGTTG	0.512													28	98					0	0	0.000878237	0	0
FCAMR	83953	broad.mit.edu	37	1	207133109	207133109	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:207133109G>A	uc001hfa.3	-	7	1988	c.1488C>T	c.(1486-1488)ACC>ACT	p.T496T	FCAMR_uc001hfb.2_Missense_Mutation_p.P229L|FCAMR_uc009xca.1_Missense_Mutation_p.P229L|FCAMR_uc001hfc.2_Silent_p.T471T	NM_001122980	NP_001116452	Q8WWV6	FCAMR_HUMAN	Fc receptor, IgA, IgM, high affinity isoform 2	451	Helical; (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)	1						CAGGAGCCAGGGTCCGAGAGC	0.433													43	190					0	0	0.00361006	0	0
CR1	1378	broad.mit.edu	37	1	207741198	207741198	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:207741198C>T	uc001hfy.2	+	17	2772	c.2632C>T	c.(2632-2634)CCT>TCT	p.P878S	CR1_uc009xcl.1_Missense_Mutation_p.P428S|CR1_uc001hfx.2_Missense_Mutation_p.P1328S|CR1_uc009xck.1_Missense_Mutation_p.P428S	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	878	Extracellular (Potential).|Sushi 14.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						TCCAGTTATTCCTAATGGGAG	0.443													47	104					0	0	0.00361006	0	0
PLXNA2	5362	broad.mit.edu	37	1	208315790	208315790	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:208315790G>A	uc001hgz.2	-	4	2148	c.1390C>T	c.(1390-1392)CCC>TCC	p.P464S		NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	464	Extracellular (Potential).|Sema.				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		CCACCATGGGGGGGACCGTCG	0.597													35	124					0	0	0.00170553	0	0
LAMB3	3914	broad.mit.edu	37	1	209796966	209796966	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:209796966C>T	uc001hhg.2	-	15	2632	c.2242G>A	c.(2242-2244)GAG>AAG	p.E748K	LAMB3_uc009xco.2_Missense_Mutation_p.E748K|LAMB3_uc001hhh.2_Missense_Mutation_p.E748K|LAMB3_uc010psl.1_RNA|hsa-mir-4260|MI0015859_5'Flank	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	748	Potential.|Domain II.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		CTCTCTGCCTCTCTCCGGCTG	0.657													6	47					0	0	0.000566183	0	0
TRAF3IP3	80342	broad.mit.edu	37	1	209935880	209935880	+	Silent	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:209935880A>G	uc001hho.2	+	4	656	c.366A>G	c.(364-366)GAA>GAG	p.E122E	TRAF3IP3_uc001hhl.2_Silent_p.E102E|TRAF3IP3_uc001hhm.1_Silent_p.E122E|TRAF3IP3_uc001hhn.2_Silent_p.E102E|TRAF3IP3_uc009xcr.2_Silent_p.E122E	NM_025228	NP_079504	Q9Y228	T3JAM_HUMAN	TRAF3-interacting JNK-activating modulator	122	Cytoplasmic (Potential).					integral to membrane	protein binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.045)		CCAGCTCTGAAGTCTTTCCAG	0.567													14	74					0	0	0.00244969	0	0
KCNH1	3756	broad.mit.edu	37	1	210970967	210970967	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:210970967C>T	uc001hib.2	-	9	1968	c.1798G>A	c.(1798-1800)GTG>ATG	p.V600M	KCNH1_uc001hic.2_Missense_Mutation_p.V573M	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	600	Cytoplasmic (Potential).|cNMP.				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		GCACAGTGCACCGTCTGGAAC	0.607													15	78					0	0	0.00244969	0	0
KCNH1	3756	broad.mit.edu	37	1	211192539	211192539	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:211192539G>A	uc001hib.2	-	6	788	c.618C>T	c.(616-618)CCC>CCT	p.P206P	KCNH1_uc001hic.2_Silent_p.P206P	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	206	Cytoplasmic (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		TGATGTGAGGGGGAGTCTTTG	0.438													69	49					0	0	0.00361006	0	0
TMEM206	55248	broad.mit.edu	37	1	212558705	212558705	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:212558705G>A	uc001hjc.3	-	4	574	c.406C>T	c.(406-408)CCT>TCT	p.P136S	TMEM206_uc010pte.1_Missense_Mutation_p.P197S	NM_018252	NP_060722	Q9H813	TM206_HUMAN	transmembrane protein 206	136	Extracellular (Potential).					integral to membrane				breast(1)	1				all cancers(67;0.012)|OV - Ovarian serous cystadenocarcinoma(81;0.0121)|GBM - Glioblastoma multiforme(131;0.0377)|Epithelial(68;0.148)		GTCAGAGGAGGAATGACCTCG	0.532													12	68					0	0	0.00244969	0	0
KCTD3	51133	broad.mit.edu	37	1	215793804	215793804	+	Silent	SNP	C	T	T	rs149998746	byFrequency	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:215793804C>T	uc001hks.2	+	18	2586	c.2292C>T	c.(2290-2292)TTC>TTT	p.F764F	KCTD3_uc001hkt.2_Silent_p.F762F|KCTD3_uc010pub.1_Silent_p.F662F|KCTD3_uc009xdn.2_Silent_p.F488F	NM_016121	NP_057205	Q9Y597	KCTD3_HUMAN	potassium channel tetramerisation domain	764						voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			ovary(3)	3				all cancers(67;0.0164)|OV - Ovarian serous cystadenocarcinoma(81;0.019)|GBM - Glioblastoma multiforme(131;0.0862)|Epithelial(68;0.13)		GGGGAGGATTCCTTGGAAGAA	0.423													10	64					0	0	0.000673444	0	0
USH2A	7399	broad.mit.edu	37	1	215933013	215933013	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:215933013C>T	uc001hku.1	-	57	11607	c.11220G>A	c.(11218-11220)GAG>GAA	p.E3740E		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3740	Fibronectin type-III 22.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TGCTATTGGGCTCCAGGTTTT	0.408										HNSCC(13;0.011)			8	58					0	0	0.000274275	0	0
USH2A	7399	broad.mit.edu	37	1	216073442	216073442	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:216073442C>T	uc001hku.1	-	40	7956	c.7569G>A	c.(7567-7569)TGG>TGA	p.W2523*		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2523	Extracellular (Potential).|Fibronectin type-III 11.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TGAATGGAATCCAAGAACTAT	0.423										HNSCC(13;0.011)			12	75					0	0	0.00400662	0	0
RRP15	51018	broad.mit.edu	37	1	218480849	218480849	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:218480849T>G	uc001hlj.2	+	4	610	c.580T>G	c.(580-582)TCT>GCT	p.S194A		NM_016052	NP_057136	Q9Y3B9	RRP15_HUMAN	ribosomal RNA processing 15 homolog	194						mitochondrion|nucleolus	protein binding				0				all cancers(67;0.0315)|OV - Ovarian serous cystadenocarcinoma(81;0.0411)|GBM - Glioblastoma multiforme(131;0.06)|Epithelial(68;0.248)		AGCTGGAAGTTCTATGAGAAA	0.368													6	43					0	0	0.00116845	0	0
EPRS	2058	broad.mit.edu	37	1	220174493	220174493	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:220174493G>C	uc001hly.1	-	17	2438	c.2168C>G	c.(2167-2169)GCC>GGC	p.A723G	EPRS_uc010puf.1_Missense_Mutation_p.A474G|EPRS_uc001hlz.1_Missense_Mutation_p.A730G|EPRS_uc009xdt.1_Missense_Mutation_p.A311G	NM_004446	NP_004437	P07814	SYEP_HUMAN	glutamyl-prolyl tRNA synthetase	723	Glutamyl-tRNA synthetase.				glutamyl-tRNA aminoacylation|prolyl-tRNA aminoacylation|protein complex assembly	cytosol|soluble fraction	ATP binding|glutamate-tRNA ligase activity|proline-tRNA ligase activity|protein binding|RNA binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0735)	L-Glutamic Acid(DB00142)|L-Proline(DB00172)	ATTTTTTGTGGCTTCTACTTT	0.358													25	66					0	0	0.00106085	0	0
MIR215	406997	broad.mit.edu	37	1	220291300	220291300	+	RNA	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:220291300A>G	hsa-mir-215|MI0000291	-			c.5A>G			IARS2_uc001hmc.2_Intron|uc010pui.1_RNA																	0						CCATTTCTGAATGATGACTTT	0.289													9	23					0	0	0.000442599	0	0
DUSP10	11221	broad.mit.edu	37	1	221913007	221913008	+	Missense_Mutation	DNP	AA	CC	CC			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:221913007_221913008AA>CC	uc001hmy.1	-	2	261_262	c.79_80TT>GG	c.(79-81)TTA>GGA	p.L27G	DUSP10_uc001hmx.1_5'Flank|DUSP10_uc001hmz.1_Intron	NM_007207	NP_009138	Q9Y6W6	DUS10_HUMAN	dual specificity phosphatase 10 isoform a	27					inactivation of MAPK activity|JNK cascade|negative regulation of JNK cascade|negative regulation of JUN kinase activity|negative regulation of stress-activated MAPK cascade	Golgi apparatus|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)|lung(1)	2				GBM - Glioblastoma multiforme(131;0.0103)		ACTAGAGTCTAAACAAAGGTTG	0.54													28	148					0	0	6.4e-05	0	0
DISP1	84976	broad.mit.edu	37	1	223179274	223179275	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:223179274_223179275CG>AT	uc001hnu.1	+	8	4682_4683	c.4535_4536CG>AT	c.(4534-4536)TCG>TAT	p.S1512Y		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	1512					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		TTAACACACTCGGAACTTTCTG	0.361													11	707					0	0	6.4e-05	0	0
C1orf65	164127	broad.mit.edu	37	1	223568257	223568257	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:223568257G>A	uc001hoa.2	+	1	1543	c.1440G>A	c.(1438-1440)AAG>AAA	p.K480K		NM_152610	NP_689823	Q8N715	CA065_HUMAN	hypothetical protein LOC164127	480	Potential.									central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0704)		AGGCCCAGAAGGAGGAAGAGC	0.592													29	34					0	0	0.00178596	0	0
ACBD3	64746	broad.mit.edu	37	1	226349293	226349293	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:226349293G>A	uc001hpy.2	-	4	714	c.667C>T	c.(667-669)CGA>TGA	p.R223*		NM_022735	NP_073572	Q9H3P7	GCP60_HUMAN	acyl-Coenzyme A binding domain containing 3	223	Arg-rich.|Potential.|Glu-rich.				steroid biosynthetic process|transport	Golgi membrane|integral to membrane|mitochondrion	fatty-acyl-CoA binding|protein binding				0	Breast(184;0.158)			GBM - Glioblastoma multiforme(131;0.121)		tcctcccgtcgaagcctttcc	0.095													11	66					0	0	0.000978159	0	0
C1orf69	200205	broad.mit.edu	37	1	228363208	228363208	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:228363208C>T	uc001hsl.3	+	3	1154	c.1065C>T	c.(1063-1065)TCC>TCT	p.S355S	C1orf69_uc010pvw.1_Silent_p.S162S	NM_001010867	NP_001010867	Q5T440	CAF17_HUMAN	hypothetical protein LOC200205 precursor	355					glycine catabolic process|heme biosynthetic process	mitochondrion	aminomethyltransferase activity				0		Prostate(94;0.0405)				CTACAGTCTCCAAGTAGTCCG	0.627													25	113					0	0	0.000878237	0	0
OBSCN	84033	broad.mit.edu	37	1	228402506	228402506	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:228402506C>T	uc009xez.1	+	5	1579	c.1535C>T	c.(1534-1536)CCC>CTC	p.P512L	OBSCN_uc001hsn.2_Missense_Mutation_p.P512L|uc001hsm.1_5'Flank	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	512	Fibronectin type-III 1.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AGGAAGCCTCCCCTGCAACCC	0.612													4	20					0	0	0.000602214	0	0
OBSCN	84033	broad.mit.edu	37	1	228456260	228456260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:228456260C>T	uc009xez.1	+	17	4935	c.4891C>T	c.(4891-4893)CCA>TCA	p.P1631S	OBSCN_uc001hsn.2_Missense_Mutation_p.P1631S|OBSCN_uc001hso.2_Missense_Mutation_p.P77S	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1631	Ig-like 17.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CAAGGAGCAGCCAGCACACAG	0.627													22	25					0	0	0.0024448	0	0
TRIM17	51127	broad.mit.edu	37	1	228596903	228596903	+	Missense_Mutation	SNP	C	T	T	rs145945297		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:228596903C>T	uc001hsu.2	-	6	1238	c.853G>A	c.(853-855)GGA>AGA	p.G285R	TRIM11_uc001hss.2_5'Flank|TRIM11_uc010pvx.1_5'Flank|TRIM11_uc001hst.1_5'Flank|TRIM17_uc001hsv.2_Missense_Mutation_p.G285R|TRIM17_uc001hsw.2_Missense_Mutation_p.G258R|TRIM17_uc009xfb.2_Missense_Mutation_p.G285R	NM_016102	NP_057186	Q9Y577	TRI17_HUMAN	tripartite motif-containing 17 isoform 1	285	B30.2/SPRY.				protein autoubiquitination	intracellular	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Prostate(94;0.0724)				TCAATCTGTCCGGGAACTCTG	0.602													34	136					0	0	0.00128727	0	0
RHOU	58480	broad.mit.edu	37	1	228879431	228879431	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:228879431G>A	uc001htf.2	+	3	1342	c.721G>A	c.(721-723)GAT>AAT	p.D241N		NM_021205	NP_067028	Q7L0Q8	RHOU_HUMAN	ras homolog gene family, member U	241					regulation of small GTPase mediated signal transduction	cell projection|cytosol|focal adhesion|Golgi membrane|podosome	GTP binding|metal ion binding|protein binding				0	Breast(184;0.162)	Prostate(94;0.183)				CAGGACTCCAGATAAAATGAA	0.438													28	118					0	0	0.00178596	0	0
URB2	9816	broad.mit.edu	37	1	229773366	229773366	+	Silent	SNP	G	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:229773366G>T	uc001hts.1	+	4	3142	c.3006G>T	c.(3004-3006)GGG>GGT	p.G1002G	URB2_uc009xfd.1_Silent_p.G1002G	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	1002						nucleolus				central_nervous_system(2)|ovary(1)	3						AAGTGATAGGGACGTTCTTAG	0.428													30	40					7.38237e-10	2.01973e-09	0.00106085	1	0
PGBD5	79605	broad.mit.edu	37	1	230486707	230486707	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:230486707G>A	uc010pwb.1	-	3	684	c.684C>T	c.(682-684)ATC>ATT	p.I228I	PGBD5_uc001htv.2_Silent_p.I327I	NM_024554	NP_078830	Q8N414	PGBD5_HUMAN	piggyBac transposable element derived 5	228						integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(184;0.0397)	Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;0.201)		GGCTCACCTGGATGATGAAGC	0.557													28	97					0	0	0.00106085	0	0
CAPN9	10753	broad.mit.edu	37	1	230883448	230883448	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:230883448G>A	uc001htz.1	+	1	319	c.206G>A	c.(205-207)CGA>CAA	p.R69Q	CAPN9_uc009xfg.1_Missense_Mutation_p.R69Q|CAPN9_uc001hua.1_Missense_Mutation_p.R69Q	NM_006615	NP_006606	O14815	CAN9_HUMAN	calpain 9 isoform 1	69	Calpain catalytic.				digestion|proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)	1	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)				GTGTGGAAACGACCAGGGGTG	0.622													8	40					0	0	0.000442599	0	0
TTC13	79573	broad.mit.edu	37	1	231060654	231060654	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:231060654G>A	uc001huf.3	-	14	1685	c.1654C>T	c.(1654-1656)CGA>TGA	p.R552*	TTC13_uc009xfi.2_Nonsense_Mutation_p.R499*|TTC13_uc009xfj.2_RNA|TTC13_uc001hug.3_Nonsense_Mutation_p.R499*|TTC13_uc009xfk.1_Nonsense_Mutation_p.R442*	NM_024525	NP_078801	Q8NBP0	TTC13_HUMAN	tetratricopeptide repeat domain 13 isoform a	552							binding			ovary(1)|skin(1)	2	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)		COAD - Colon adenocarcinoma(196;0.243)		CCATTCATTCGAACTTTCGAG	0.438													44	151					0	0	0.00361006	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232577037	232577037	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:232577037G>A	uc001hvg.2	-	12	3800	c.3642C>T	c.(3640-3642)CAC>CAT	p.H1214H	SIPA1L2_uc001hvf.2_Silent_p.H288H	NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	1214					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				AAGGACTTACGTGAGAAAGCT	0.493													120	499					0	0	0.00361006	0	0
SLC35F3	148641	broad.mit.edu	37	1	234445036	234445036	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:234445036C>T	uc001hwa.1	+	3	819	c.591C>T	c.(589-591)ATC>ATT	p.I197I	SLC35F3_uc001hvy.1_Silent_p.I266I	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	197	Helical; (Potential).				transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			TCTCATGGATCGTTCTCAGGG	0.443													47	29					0	0	0.00361006	0	0
RYR2	6262	broad.mit.edu	37	1	237777673	237777673	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:237777673C>T	uc001hyl.1	+	37	5365	c.5245C>T	c.(5245-5247)CCA>TCA	p.P1749S		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1749	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			ACACGGCCTTCCAGGGATCGG	0.512													5	45					0	0	0.000602214	0	0
RYR2	6262	broad.mit.edu	37	1	237969439	237969439	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:237969439C>T	uc001hyl.1	+	99	14274	c.14154C>T	c.(14152-14154)TCC>TCT	p.S4718S	RYR2_uc010pyb.1_Silent_p.S151S	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4718					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CTTAATAGTCCTTCCTCTACC	0.338													7	64					0	0	0.00307968	0	0
FMN2	56776	broad.mit.edu	37	1	240255747	240255747	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:240255747C>T	uc010pyd.1	+	1	563	c.338C>T	c.(337-339)TCC>TTC	p.S113F	FMN2_uc010pye.1_Missense_Mutation_p.S113F	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	113					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			AGCGCTCACTCCCTGCTCACC	0.647													5	23					0	0	0.000602214	0	0
EXO1	9156	broad.mit.edu	37	1	242042534	242042534	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:242042534C>T	uc001hzh.2	+	13	2538	c.1998C>T	c.(1996-1998)CCC>CCT	p.P666P	EXO1_uc001hzi.2_Silent_p.P666P|EXO1_uc001hzj.2_Silent_p.P666P|EXO1_uc009xgq.2_Silent_p.P665P	NM_130398	NP_569082	Q9UQ84	EXO1_HUMAN	exonuclease 1 isoform b	666	Interaction with MSH2.				meiosis|mismatch repair	nucleus	double-stranded DNA specific 5'-3' exodeoxyribonuclease activity|flap endonuclease activity|metal ion binding|protein binding|protein binding|ribonuclease H activity|single-stranded DNA specific 5'-3' exodeoxyribonuclease activity			ovary(2)|lung(2)|skin(1)	5	Ovarian(103;0.103)	all_cancers(173;0.0555)	OV - Ovarian serous cystadenocarcinoma(106;0.0107)			AGTCTCATCCCTTACGAGAAG	0.468								Direct_reversal_of_damage|Editing_and_processing_nucleases					19	63					0	0	0.00152264	0	0
KIF26B	55083	broad.mit.edu	37	1	245530267	245530267	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:245530267C>T	uc001ibf.1	+	3	1037	c.597C>T	c.(595-597)ATC>ATT	p.I199I	KIF26B_uc010pyq.1_Silent_p.I199I|KIF26B_uc010pyr.1_5'UTR	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	199					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			AGGAGGCCATCCAGATGGTGC	0.632													14	27					0	0	0.00316338	0	0
NLRP3	114548	broad.mit.edu	37	1	247608119	247608119	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:247608119C>T	uc001icr.2	+	10	3145	c.3007C>T	c.(3007-3009)CTG>TTG	p.L1003L	NLRP3_uc001ics.2_Silent_p.L946L|NLRP3_uc001icu.2_Silent_p.L1003L|NLRP3_uc001icw.2_Silent_p.L946L|NLRP3_uc001icv.2_Silent_p.L889L|NLRP3_uc010pyw.1_Silent_p.L981L	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	1003					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			CCTGCAGAACCTGGGGTGAGT	0.552													4	31					0	0	0.00024832	0	0
OR2W5	441932	broad.mit.edu	37	1	247655219	247655219	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:247655219C>T	uc001icz.1	+	1	790	c.790C>T	c.(790-792)CAA>TAA	p.Q264*		NM_001004698	NP_001004698	A6NFC9	OR2W5_HUMAN	olfactory receptor, family 2, subfamily W,	264					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.222)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			TGAAGCCGGCCAACAGCTACT	0.522													63	43					0	0	0.00361006	0	0
TRIM58	25893	broad.mit.edu	37	1	248039361	248039361	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:248039361G>A	uc001ido.2	+	6	1079	c.1031G>A	c.(1030-1032)GGG>GAG	p.G344E	OR2W3_uc001idp.1_Intron	NM_015431	NP_056246	Q8NG06	TRI58_HUMAN	tripartite motif-containing 58	344	B30.2/SPRY.					intracellular	zinc ion binding			skin(3)|ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)	7	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			TTCTCATCAGGGAGGCATTAC	0.562													14	57					0	0	0.00185496	0	0
OR2L8	391190	broad.mit.edu	37	1	248112603	248112603	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:248112603G>A	uc001idt.1	+	1	444	c.444G>A	c.(442-444)TGG>TGA	p.W148*	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			CAGGGTCTTGGATCATAGGCT	0.443													65	116					0	0	0.00361006	0	0
OR2L1P	26247	broad.mit.edu	37	1	248154433	248154433	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:248154433C>T	uc001idv.1	+	1	865	c.621C>T	c.(619-621)ATC>ATT	p.I207I	OR2L13_uc001ids.2_Intron	NR_002145				RecName: Full=Olfactory receptor 2L5; AltName: Full=Olfactory receptor OR1-53;												0						ACCCCATCATCTACAGCCTGA	0.473													16	47					0	0	0.00188189	0	0
OR2L13	284521	broad.mit.edu	37	1	248263173	248263173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:248263173C>T	uc001ids.2	+	3	833	c.496C>T	c.(496-498)CCC>TCC	p.P166S		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	166	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			CCTTCATATTCCCTACTGCAG	0.458													37	136					0	0	0.00148497	0	0
OR2M5	127059	broad.mit.edu	37	1	248309366	248309366	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:248309366G>A	uc010pze.1	+	1	917	c.917G>A	c.(916-918)GGA>GAA	p.G306E		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	306	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			AAAGTGTTAGGAAAGGGCAAG	0.438													6	36					0	0	0.00116845	0	0
OR2M2	391194	broad.mit.edu	37	1	248343329	248343329	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:248343329C>T	uc010pzf.1	+	1	42	c.42C>T	c.(40-42)CTC>CTT	p.L14L		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			ACTTCATCCTCCTTGGAATCT	0.433													32	128					0	0	0.00428921	0	0
OR2M7	391196	broad.mit.edu	37	1	248487377	248487377	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:248487377G>A	uc010pzk.1	-	1	494	c.494C>T	c.(493-495)TCC>TTC	p.S165F		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	165	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GTAGGAGAAGGAAAATGTCGC	0.453													44	85					0	0	0.00361006	0	0
OR2T3	343173	broad.mit.edu	37	1	248637552	248637552	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:248637552G>A	uc001iel.1	+	1	901	c.901G>A	c.(901-903)GAT>AAT	p.D301N		NM_001005495	NP_001005495	Q8NH03	OR2T3_HUMAN	olfactory receptor, family 2, subfamily T,	301	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CCGCAACAAAGATGTCACCAG	0.478													17	297					0	0	0.00278032	0	0
OR2G6	391211	broad.mit.edu	37	1	248685470	248685470	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:248685470G>A	uc001ien.1	+	1	523	c.523G>A	c.(523-525)GAT>AAT	p.D175N		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCGCACACTGGATCATATTTT	0.537													18	52					0	0	0.00074312	0	0
AKR1CL1	340811	broad.mit.edu	37	10	5227116	5227116	+	RNA	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:5227116G>A	uc009xhz.2	-	1		c.35C>T				NR_027916				Homo sapiens cDNA FLJ16347 fis, clone TESTI2036288, moderately similar to PROSTAGLANDIN-F SYNTHASE 1 (EC 1.1.1.188).												0						AGCCCAGTAGGAGACAAGGCT	0.493													7	3					0	0	0.00198382	0	0
ASB13	79754	broad.mit.edu	37	10	5683848	5683848	+	Silent	SNP	G	A	A	rs61756319	byFrequency	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:5683848G>A	uc001iig.2	-	5	638	c.594C>T	c.(592-594)ATC>ATT	p.I198I	ASB13_uc001iii.2_RNA|ASB13_uc001iih.2_RNA|ASB13_uc009xic.2_Silent_p.I198I	NM_024701	NP_078977	Q8WXK3	ASB13_HUMAN	ankyrin repeat and SOCS box-containing protein	198	ANK 6.				intracellular signal transduction		protein binding			ovary(1)	1				GBM - Glioblastoma multiforme(2;9.59e-09)		TAAGCATCTCGATGAGGTCAA	0.582													24	24					0	0	0.00178596	0	0
CELF2	10659	broad.mit.edu	37	10	11047405	11047405	+	Splice_Site	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:11047405T>A	uc001iki.3	+	1	145	c.53_splice	c.e1+2	p.S18_splice	CELF2_uc010qbi.1_Splice_Site|CELF2_uc010qbj.1_Splice_Site_p.S18_splice	NM_001025077	NP_001020248	O95319	CELF2_HUMAN	CUG triplet repeat, RNA binding protein 2						mRNA processing|regulation of heart contraction	cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding				0						GCTTTTAAGGTATGTTGTTGT	0.393													48	67					0	0	0.00361006	0	0
UPF2	26019	broad.mit.edu	37	10	12046533	12046533	+	Silent	SNP	G	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:12046533G>T	uc001ila.2	-	4	1974	c.1500C>A	c.(1498-1500)ACC>ACA	p.T500T	UPF2_uc001ilb.2_Silent_p.T500T|UPF2_uc001ilc.2_Silent_p.T500T|UPF2_uc009xiz.1_Silent_p.T500T	NM_080599	NP_542166	Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog	500	Potential.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			central_nervous_system(2)|ovary(1)	3		Renal(717;0.228)				ATTTACCTTTGGTATCATCTT	0.269													9	191					0.000274275	0.000747143	0.000274275	1	0
CAMK1D	57118	broad.mit.edu	37	10	12870807	12870807	+	Missense_Mutation	SNP	C	T	T	rs148446769		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:12870807C>T	uc001ilo.2	+	11	1314	c.1079C>T	c.(1078-1080)TCG>TTG	p.S360L		NM_153498	NP_705718	Q8IU85	KCC1D_HUMAN	calcium/calmodulin-dependent protein kinase ID	360	Ser-rich.					calcium- and calmodulin-dependent protein kinase complex|cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|stomach(1)	2				GBM - Glioblastoma multiforme(1;3.16e-05)		ATTTCTTCTTCGTCGGGGGTC	0.592													83	112					0	0	0.00361006	0	0
FAM171A1	221061	broad.mit.edu	37	10	15255455	15255455	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:15255455G>A	uc001iob.2	-	8	2139	c.2132C>T	c.(2131-2133)TCC>TTC	p.S711F		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	711	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						GCCATCCAAGGAGACGAACCA	0.552													29	36					0	0	0.00178596	0	0
FAM188A	80013	broad.mit.edu	37	10	15838110	15838110	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:15838110T>A	uc001iod.1	-	11	1165	c.944A>T	c.(943-945)TAC>TTC	p.Y315F	FAM188A_uc001ioe.1_Missense_Mutation_p.Y142F|FAM188A_uc001iof.1_Missense_Mutation_p.Y315F	NM_024948	NP_079224	Q9H8M7	F188A_HUMAN	chromosome 10 open reading frame 97	315					apoptosis	nucleus	calcium ion binding			ovary(1)	1						TTCTGGGTCGTAGGTTTGAAA	0.358													16	32					0	0	0.00400662	0	0
PLXDC2	84898	broad.mit.edu	37	10	20506404	20506404	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:20506404G>A	uc001iqg.1	+	11	1809	c.1172G>A	c.(1171-1173)CGA>CAA	p.R391Q	PLXDC2_uc001iqh.1_Missense_Mutation_p.R342Q|PLXDC2_uc009xkc.1_RNA	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	391	Extracellular (Potential).|Thr-rich.					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						ACTTCTTCTCGAACCACCACA	0.443													5	11					0	0	0.00198382	0	0
NEBL	10529	broad.mit.edu	37	10	21115453	21115453	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:21115453C>T	uc001iqi.2	-	18	2189	c.1792G>A	c.(1792-1794)GAA>AAA	p.E598K	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	598	Nebulin 16.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						GCTCCCACTTCTTTCTTATAA	0.358													9	20					0	0	0.000442599	0	0
KIAA1217	56243	broad.mit.edu	37	10	24669984	24669984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:24669984G>A	uc001iru.3	+	3	944	c.541G>A	c.(541-543)GAA>AAA	p.E181K	KIAA1217_uc001irs.2_Missense_Mutation_p.E101K|KIAA1217_uc001irt.3_Missense_Mutation_p.E181K|KIAA1217_uc010qcy.1_Missense_Mutation_p.E181K|KIAA1217_uc010qcz.1_Missense_Mutation_p.E181K|KIAA1217_uc001irv.1_Missense_Mutation_p.E31K|KIAA1217_uc010qda.1_RNA	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	181					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						CCAGACGAAAGAAAGATCTCT	0.478													12	8					0	0	0.000978159	0	0
KIAA1217	56243	broad.mit.edu	37	10	24822121	24822121	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:24822121G>A	uc001iru.3	+	16	3772	c.3369G>A	c.(3367-3369)GAG>GAA	p.E1123E	KIAA1217_uc001irs.2_Silent_p.E1043E|KIAA1217_uc001irt.3_Silent_p.E1088E|KIAA1217_uc010qcy.1_Silent_p.E1087E|KIAA1217_uc010qcz.1_Silent_p.E1088E|KIAA1217_uc001irw.2_Silent_p.E806E|KIAA1217_uc001irz.2_Silent_p.E806E|KIAA1217_uc001irx.2_Silent_p.E806E|KIAA1217_uc001iry.2_Silent_p.E806E	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1123					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						CAAAGGATGAGGAGGAAGAAG	0.547													13	20					0	0	0.00316338	0	0
KIAA1217	56243	broad.mit.edu	37	10	24831670	24831670	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:24831670G>A	uc001iru.3	+	18	3986	c.3583G>A	c.(3583-3585)GAA>AAA	p.E1195K	KIAA1217_uc001irs.2_Intron|KIAA1217_uc001irt.3_Intron|KIAA1217_uc010qcy.1_Missense_Mutation_p.E1159K|KIAA1217_uc010qcz.1_Intron|KIAA1217_uc001irw.2_Missense_Mutation_p.E878K|KIAA1217_uc001irz.2_Intron|KIAA1217_uc001irx.2_Missense_Mutation_p.E878K|KIAA1217_uc001iry.2_Intron|KIAA1217_uc001isa.1_Missense_Mutation_p.E31K	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1195					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						TGTTGAATATGAAAATGGCCC	0.423													21	19					0	0	0.00229938	0	0
KIAA1217	56243	broad.mit.edu	37	10	24834803	24834803	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:24834803C>T	uc001iru.3	+	21	5785	c.5382C>T	c.(5380-5382)TCC>TCT	p.S1794S	KIAA1217_uc001irs.2_Silent_p.S1115S|KIAA1217_uc001irt.3_Silent_p.S1160S|KIAA1217_uc010qcy.1_Silent_p.S1225S|KIAA1217_uc010qcz.1_Silent_p.S1200S|KIAA1217_uc001irw.2_3'UTR|KIAA1217_uc001irz.2_3'UTR|KIAA1217_uc001irx.2_3'UTR|KIAA1217_uc001iry.2_3'UTR	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1794	Ser-rich.				embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						AGCCTACTTCCCCCTCCTTAC	0.488													26	40					0	0	0.00395357	0	0
GPR158	57512	broad.mit.edu	37	10	25885576	25885576	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:25885576C>T	uc001isj.2	+	10	2063	c.2003C>T	c.(2002-2004)TCA>TTA	p.S668L	GPR158_uc001isk.2_Missense_Mutation_p.S43L	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	668	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						TTTCAGTTTTCACATTCAAGC	0.328													8	9					0	0	0.00307968	0	0
PTCHD3	374308	broad.mit.edu	37	10	27687801	27687801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:27687801C>T	uc001itu.2	-	4	1844	c.1726G>A	c.(1726-1728)GAA>AAA	p.E576K		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	576					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GTTCCATGTTCATCTGGGACA	0.383													15	9					0	0	0.00244969	0	0
ARMC4	55130	broad.mit.edu	37	10	28151526	28151526	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:28151526A>T	uc009xky.2	-	18	2734	c.2636T>A	c.(2635-2637)TTT>TAT	p.F879Y	ARMC4_uc010qds.1_Missense_Mutation_p.F404Y|ARMC4_uc010qdt.1_Missense_Mutation_p.F571Y|ARMC4_uc001itz.2_Missense_Mutation_p.F879Y	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	879	ARM 7.						binding			ovary(4)|skin(2)	6						ACCACCAACAAAGGAACGAAC	0.348													9	10					0	0	0.000442599	0	0
MPP7	143098	broad.mit.edu	37	10	28378745	28378745	+	Silent	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:28378745A>G	uc001iua.1	-	14	1382	c.978T>C	c.(976-978)CTT>CTC	p.L326L	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Silent_p.L326L|MPP7_uc009xla.2_Silent_p.L326L|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	326					establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						CTTTTCTACTAAGACGAAAAC	0.323													13	15					0	0	0.00136819	0	0
KIAA1462	57608	broad.mit.edu	37	10	30318758	30318758	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:30318758G>A	uc001iux.2	-	2	378	c.319C>T	c.(319-321)CCC>TCC	p.P107S	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_5'UTR|KIAA1462_uc009xle.1_Missense_Mutation_p.P107S	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	107										ovary(4)	4						CCAGTCGGGGGATGAGAGGAC	0.532													13	20					0	0	0.00136819	0	0
ALOX5	240	broad.mit.edu	37	10	45920485	45920485	+	Missense_Mutation	SNP	C	G	G	rs146711717		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:45920485C>G	uc001jce.2	+	6	838	c.739C>G	c.(739-741)CGG>GGG	p.R247G	ALOX5_uc009xmt.2_Missense_Mutation_p.R247G|ALOX5_uc010qfg.1_Missense_Mutation_p.R247G	NM_000698	NP_000689	P09917	LOX5_HUMAN	arachidonate 5-lipoxygenase	247	Lipoxygenase.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	cytosol|nuclear envelope lumen|nuclear matrix|nuclear membrane	arachidonate 5-lipoxygenase activity|iron ion binding|lipoxygenase activity|protein binding			ovary(1)|pancreas(1)	2		Lung SC(717;0.0257)			Diethylcarbamazine(DB00711)|Hydrocortisone(DB00741)|Leflunomide(DB01097)|Masoprocol(DB00179)|Meclofenamic acid(DB00939)|Minocycline(DB01017)|Montelukast(DB00471)|Quinacrine(DB01103)|Vitamin E(DB00163)|Zileuton(DB00744)	TGTGTTGATCCGGCGCTGCAC	0.602													20	69					0	0	0.00188189	0	0
FAM21C	253725	broad.mit.edu	37	10	46224392	46224392	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:46224392G>C	uc001jcu.2	+	3	308	c.209G>C	c.(208-210)CGG>CCG	p.R70P	FAM21C_uc001jcs.1_Intron|FAM21C_uc001jct.2_Missense_Mutation_p.R70P|FAM21C_uc010qfi.1_Missense_Mutation_p.R70P	NM_015262	NP_056077	A8K5W5	A8K5W5_HUMAN	hypothetical protein LOC253725	70										ovary(1)	1						GGACTAATCCGGGAAACCAAA	0.373													4	224					0	0	0.00024832	0	0
FAM21C	253725	broad.mit.edu	37	10	46254773	46254773	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:46254773C>T	uc001jcu.2	+	17	1658	c.1559C>T	c.(1558-1560)TCT>TTT	p.S520F	FAM21C_uc001jcs.1_Missense_Mutation_p.S465F|FAM21C_uc001jct.2_Missense_Mutation_p.S520F|FAM21C_uc010qfi.1_Missense_Mutation_p.S496F|FAM21C_uc010qfj.1_Intron|FAM21C_uc010qfk.1_5'UTR	NM_015262	NP_056077	A8K5W5	A8K5W5_HUMAN	hypothetical protein LOC253725	520										ovary(1)	1						GTTACCTTATCTTACAGCAAA	0.403													20	37					0	0	0.00278032	0	0
SYT15	83849	broad.mit.edu	37	10	46965114	46965114	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:46965114C>T	uc001jea.2	-	6	984	c.831G>A	c.(829-831)TCG>TCA	p.S277S	SYT15_uc001jdz.2_Silent_p.S277S|SYT15_uc001jeb.2_Silent_p.S155S|SYT15_uc010qfp.1_RNA	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	277	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0						CGCCAAACTCCGAGGGGGGCT	0.637													9	71					0	0	0.000442599	0	0
SYT15	83849	broad.mit.edu	37	10	46967500	46967500	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:46967500C>T	uc001jea.2	-	4	730	c.577G>A	c.(577-579)GAG>AAG	p.E193K	SYT15_uc001jdz.2_Missense_Mutation_p.E193K|SYT15_uc001jeb.2_Missense_Mutation_p.E71K|SYT15_uc010qfp.1_RNA	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	193	Cytoplasmic (Potential).|C2 1.					integral to membrane|plasma membrane					0						AAGCGCCGCTCATCGGGCAGC	0.612													15	100					0	0	0.00316338	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999685	46999685	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:46999685G>A	uc001jec.2	+	3	940	c.805G>A	c.(805-807)GGG>AGG	p.G269R	GPRIN2_uc010qfq.1_Missense_Mutation_p.G32R	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	269											0						GAGCGAGTCTGGGCTGCAGGC	0.627													20	90					0	0	0.00152264	0	0
PPYR1	5540	broad.mit.edu	37	10	47086912	47086912	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:47086912C>T	uc001jee.2	+	3	548	c.129C>T	c.(127-129)TTC>TTT	p.F43F	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Silent_p.F43F	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	43	Helical; Name=1; (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						TGATGGTCTTCATCGTCACTT	0.522													52	117					0	0	0.00361006	0	0
FAM21B	55747	broad.mit.edu	37	10	47915888	47915888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:47915888C>T	uc009xni.2	+	15	1295	c.1295C>T	c.(1294-1296)TCT>TTT	p.S432F	FAM21B_uc001jep.3_Missense_Mutation_p.S327F	NM_018232	NP_060702	Q5SNT6	FA21B_HUMAN	hypothetical protein LOC55747	432					retrograde transport, endosome to Golgi	early endosome membrane|WASH complex				ovary(1)	1						GTTACCTTATCTTCCAGCAAA	0.408													21	74					0	0	0.00178596	0	0
RBP3	5949	broad.mit.edu	37	10	48389662	48389662	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:48389662C>T	uc001jez.2	-	1	1330	c.1216G>A	c.(1216-1218)GAA>AAA	p.E406K		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	406	4 X approximate tandem repeats.|2.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity	p.E406K(1)		large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GGTGAGTCTTCGGCTGCAGCG	0.652													11	59					0	0	0.00136819	0	0
Unknown	0	broad.mit.edu	37	10	49218553	49218553	+	Missense_Mutation	SNP	T	C	C	rs77581903		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:49218553T>C	uc001jgd.2	-	8	1745	c.1586A>G	c.(1585-1587)CAT>CGT	p.H529R	uc001jge.1_5'Flank					RecName: Full=Arf-GAP, GTPase, ANK repeat and PH domain-containing protein 11; AltName: Full=Centaurin-gamma-like protein KIAA1975;																		ATATTTGGAATGGATCCAGCG	0.567													5	36					0	0	0.00307968	0	0
ERCC6	2074	broad.mit.edu	37	10	50690901	50690901	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:50690901G>A	uc001jhs.3	-	10	2155	c.2001C>T	c.(1999-2001)ACC>ACT	p.T667T	ERCC6_uc010qgr.1_Silent_p.T37T|ERCC6_uc001jhr.3_Silent_p.T67T	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	667	Helicase ATP-binding.				base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						TCCGATGAGGGGTGCGAAACT	0.448								Direct_reversal_of_damage|NER					34	42					0	0	0.00283554	0	0
SLC18A3	6572	broad.mit.edu	37	10	50820177	50820177	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:50820177C>T	uc001jhw.2	+	1	1831	c.1391C>T	c.(1390-1392)CCC>CTC	p.P464L	CHAT_uc001jhv.1_Intron|CHAT_uc001jhx.1_5'Flank|CHAT_uc001jhy.1_5'Flank|CHAT_uc001jia.2_5'Flank|CHAT_uc001jhz.2_5'Flank|CHAT_uc010qgs.1_5'Flank	NM_003055	NP_003046	Q16572	VACHT_HUMAN	vesicular acetylcholine transporter	464	Helical; (Potential).				neurotransmitter secretion	clathrin sculpted acetylcholine transport vesicle membrane|integral to plasma membrane|membrane fraction	acetylcholine transmembrane transporter activity			ovary(2)	2						CTCTATGCTCCCGTCTTGCTG	0.642													10	39					0	0	0.000442599	0	0
ASAH2	56624	broad.mit.edu	37	10	51974591	51974591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:51974591C>T	uc001jjd.2	-	8	1052	c.1052G>A	c.(1051-1053)GGA>GAA	p.G351E	ASAH2_uc009xos.2_Missense_Mutation_p.G351E	NM_019893	NP_063946	Q9NR71	ASAH2_HUMAN	N-acylsphingosine amidohydrolase 2 isoform a	351	Lumenal (Potential).				apoptosis|ceramide metabolic process|signal transduction	integral to membrane|mitochondrion|plasma membrane	ceramidase activity				0						GGACACATCTCCTAGGTTTGA	0.448													11	1					0	0	0.00136819	0	0
PRKG1	5592	broad.mit.edu	37	10	54040554	54040554	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:54040554C>T	uc001jjm.2	+	13	1558	c.1364C>T	c.(1363-1365)TCG>TTG	p.S455L	PRKG1_uc001jjo.2_Missense_Mutation_p.S470L|PRKG1_uc009xow.1_Missense_Mutation_p.S173L|uc001jjq.1_Intron	NM_001098512	NP_001091982	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I isoform	455	Protein kinase.				actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			lung(2)|stomach(1)|ovary(1)|central_nervous_system(1)|skin(1)	6		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		CTCAGAGGTTCGTTTGAAGAT	0.343													9	8					0	0	0.000978159	0	0
ANK3	288	broad.mit.edu	37	10	61831209	61831209	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:61831209G>A	uc001jky.2	-	37	9622	c.9430C>T	c.(9430-9432)CCC>TCC	p.P3144S	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3144					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CTACCTTGGGGAGAAGGAGGT	0.433													32	28					0	0	0.00209593	0	0
ANK3	288	broad.mit.edu	37	10	61941113	61941113	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:61941113C>T	uc001jky.2	-	18	2350	c.2158G>A	c.(2158-2160)GGG>AGG	p.G720R	ANK3_uc010qih.1_Missense_Mutation_p.G703R|ANK3_uc001jkz.3_Missense_Mutation_p.G714R|ANK3_uc001jlb.1_Missense_Mutation_p.G249R|ANK3_uc001jlc.1_Missense_Mutation_p.G381R	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	720	ANK 20.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						ACATGAGCCCCTTGGTTTACG	0.498													44	71					0	0	0.00361006	0	0
ANK3	288	broad.mit.edu	37	10	62023647	62023647	+	Silent	SNP	C	T	T	rs145034480	byFrequency	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:62023647C>T	uc001jky.2	-	6	837	c.645G>A	c.(643-645)ACG>ACA	p.T215T	ANK3_uc010qih.1_Silent_p.T198T|ANK3_uc001jkz.3_Silent_p.T209T|ANK3_uc001jlb.1_5'UTR	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	215	ANK 5.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CGGCGGCTTTCGTGTCGTCTT	0.542													14	20					0	0	0.00244969	0	0
ARID5B	84159	broad.mit.edu	37	10	63759869	63759869	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:63759869G>A	uc001jlt.1	+	4	548	c.522G>A	c.(520-522)ACG>ACA	p.T174T	ARID5B_uc010qil.1_Silent_p.T174T	NM_032199	NP_115575	Q14865	ARI5B_HUMAN	AT rich interactive domain 5B (MRF1-like)	174					liver development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent		protein binding|transcription regulatory region DNA binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4	Prostate(12;0.016)|all_hematologic(501;0.215)					AGGAAGAAACGAACGTGATAG	0.468													15	8					0	0	0.00316338	0	0
TACR2	6865	broad.mit.edu	37	10	71166976	71166976	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:71166976G>A	uc001jpn.2	-	4	1397	c.802C>T	c.(802-804)CTC>TTC	p.L268F	TACR2_uc001jpm.2_Missense_Mutation_p.L56F	NM_001057	NP_001048	P21452	NK2R_HUMAN	tachykinin receptor 2	268	Helical; Name=6; (Potential).				excretion|muscle contraction	integral to plasma membrane	tachykinin receptor activity			prostate(1)	1					Clonidine(DB00575)|Octreotide(DB00104)	ATGAAGTAGAGGTGGTAGGGC	0.537													11	8					0	0	0.000978159	0	0
COL13A1	1305	broad.mit.edu	37	10	71690233	71690233	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:71690233G>A	uc001jpr.1	+	28	2111	c.1575G>A	c.(1573-1575)GTG>GTA	p.V525V	COL13A1_uc001jqj.1_Silent_p.V525V|COL13A1_uc001jps.1_Silent_p.V496V|COL13A1_uc001jpt.1_Silent_p.V484V|COL13A1_uc001jpu.1_Silent_p.V506V|COL13A1_uc001jpv.1_Silent_p.V525V|COL13A1_uc001jpx.1_Silent_p.V503V|COL13A1_uc001jpw.1_Silent_p.V472V|COL13A1_uc001jpy.1_Silent_p.V463V|COL13A1_uc001jpz.1_Silent_p.V468V|COL13A1_uc001jqa.1_Silent_p.V465V|COL13A1_uc001jqc.1_Silent_p.V525V|COL13A1_uc001jqb.1_Silent_p.V474V|COL13A1_uc001jql.2_Silent_p.V525V|COL13A1_uc001jqd.1_Silent_p.V513V|COL13A1_uc001jqe.1_Silent_p.V508V|COL13A1_uc001jqf.1_Silent_p.V506V|COL13A1_uc001jqg.1_Silent_p.V503V|COL13A1_uc001jqh.1_Silent_p.V525V|COL13A1_uc001jqi.1_Silent_p.V525V|COL13A1_uc010qjf.1_Silent_p.V315V	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	525	Extracellular (Potential).|Triple-helical region 3 (COL3).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	CTCCAGGAGTGAAGGGAGAAA	0.602													13	6					0	0	0.00136819	0	0
UNC5B	219699	broad.mit.edu	37	10	73046512	73046512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:73046512G>A	uc001jro.2	+	5	1064	c.619G>A	c.(619-621)GAC>AAC	p.D207N	UNC5B_uc001jrp.2_Missense_Mutation_p.D207N	NM_170744	NP_734465	Q8IZJ1	UNC5B_HUMAN	unc-5 homolog B precursor	207	Ig-like C2-type.|Extracellular (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane				ovary(2)|lung(1)	3						GCTCACCATCGACCACAACCT	0.612													47	53					0	0	0.00361006	0	0
UNC5B	219699	broad.mit.edu	37	10	73055663	73055663	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:73055663C>T	uc001jro.2	+	14	2716	c.2271C>T	c.(2269-2271)TCC>TCT	p.S757S	UNC5B_uc001jrp.2_Silent_p.S746S	NM_170744	NP_734465	Q8IZJ1	UNC5B_HUMAN	unc-5 homolog B precursor	757	Cytoplasmic (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane				ovary(2)|lung(1)	3						TGCGCCTCTCCCTCCATGACC	0.607													13	19					0	0	0.00074312	0	0
TTC18	118491	broad.mit.edu	37	10	75037095	75037095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:75037095G>A	uc009xrc.2	-	22	2754	c.2633C>T	c.(2632-2634)TCA>TTA	p.S878L	TTC18_uc001jty.2_Missense_Mutation_p.S878L|TTC18_uc001jtv.3_5'UTR|TTC18_uc001jtw.3_5'UTR|TTC18_uc001jtx.2_Missense_Mutation_p.S259L	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	878							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					CAGAAGAGCTGATGAATCTTG	0.383													25	36					0	0	0.00395357	0	0
MYOZ1	58529	broad.mit.edu	37	10	75397560	75397560	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:75397560A>G	uc001jur.2	-	3	559	c.194T>C	c.(193-195)ATG>ACG	p.M65T		NM_021245	NP_067068	Q9NP98	MYOZ1_HUMAN	myozenin 1	65					myofibril assembly	nucleus|pseudopodium	FATZ binding			ovary(2)	2	Prostate(51;0.0112)					CTCCACCCTCATCTGCCGCAG	0.483													55	64					0	0	0.00361006	0	0
ADK	132	broad.mit.edu	37	10	76154057	76154057	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:76154057C>T	uc001jwi.2	+	5	504	c.432C>T	c.(430-432)ATC>ATT	p.I144I	ADK_uc010qlb.1_Silent_p.I144I|ADK_uc001jwj.2_Silent_p.I127I|ADK_uc010qlc.1_Silent_p.I109I	NM_006721	NP_006712	P55263	ADK_HUMAN	adenosine kinase isoform b	144					purine base metabolic process|purine ribonucleoside salvage	cytosol	adenosine kinase activity|ATP binding|metal ion binding|phosphotransferase activity, alcohol group as acceptor			ovary(1)|skin(1)	2	Prostate(51;0.0112)|Ovarian(15;0.148)				Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)|Pegademase bovine(DB00061)|Ribavirin(DB00811)	CTGCATGCATCACTGGTGACA	0.413													22	36					0	0	0.00332997	0	0
MYST4	23522	broad.mit.edu	37	10	76784832	76784832	+	Silent	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:76784832A>C	uc001jwn.1	+	17	3982	c.3489A>C	c.(3487-3489)TCA>TCC	p.S1163S	MYST4_uc001jwo.1_Silent_p.S871S|MYST4_uc001jwp.1_Silent_p.S980S	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	1163					histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					TTGACAACTCAGATGAAGAGA	0.493			T	CREBBP	AML								16	24					0	0	0.000566183	0	0
DLG5	9231	broad.mit.edu	37	10	79603326	79603326	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:79603326G>A	uc001jzk.2	-	6	1073	c.1003C>T	c.(1003-1005)CTG>TTG	p.L335L	DLG5_uc001jzj.2_Silent_p.L90L|DLG5_uc009xru.1_RNA|DLG5_uc001jzl.3_5'Flank	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	335					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			AGGCGGCTCAGGTCTGCATTG	0.582													38	52					0	0	0.00222228	0	0
DLG5	9231	broad.mit.edu	37	10	79603373	79603373	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:79603373G>A	uc001jzk.2	-	6	1026	c.956C>T	c.(955-957)GCC>GTC	p.A319V	DLG5_uc001jzj.2_Missense_Mutation_p.A74V|DLG5_uc009xru.1_RNA|DLG5_uc001jzl.3_5'Flank	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	319					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			CTTCCGAAGGGCGTCATAGTC	0.552													34	42					0	0	0.000953801	0	0
SFTPD	6441	broad.mit.edu	37	10	81701718	81701718	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:81701718C>T	uc001kbh.2	-	5	585	c.542G>A	c.(541-543)GGG>GAG	p.G181E	MBL1P_uc001kbf.2_Intron	NM_003019	NP_003010	P35247	SFTPD_HUMAN	pulmonary surfactant-associated protein D	181	Collagen-like.				cell junction assembly|innate immune response|lung alveolus development|macrophage chemotaxis|negative regulation of interleukin-2 biosynthetic process|negative regulation of T cell proliferation|positive regulation of phagocytosis|reactive oxygen species metabolic process|receptor-mediated endocytosis|respiratory gaseous exchange|surfactant homeostasis	collagen|endocytic vesicle|extracellular space|lysosome	bacterial cell surface binding|protein binding|sugar binding			skin(1)	1	Breast(12;0.000615)|Prostate(51;0.0095)|all_epithelial(25;0.027)		Epithelial(14;0.0244)|all cancers(16;0.0558)|Colorectal(32;0.109)			ACCTGCTGCCCCTGTGTTTCC	0.652													17	22					0	0	0.00188189	0	0
GHITM	27069	broad.mit.edu	37	10	85901294	85901294	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:85901294C>G	uc001kcs.1	+	2	242	c.38C>G	c.(37-39)CCT>CGT	p.P13R	GHITM_uc010qma.1_5'UTR|GHITM_uc010qmb.1_5'Flank	NM_014394	NP_055209	Q9H3K2	GHITM_HUMAN	growth hormone inducible transmembrane protein	13					apoptosis	integral to membrane|mitochondrial inner membrane					0						CGGACACTACCTTCTAGGGTT	0.483													12	22					0	0	0.00185496	0	0
RGR	5995	broad.mit.edu	37	10	86014182	86014182	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:86014182A>C	uc001kdc.1	+	5	651	c.613A>C	c.(613-615)AAG>CAG	p.K205Q	RGR_uc001kdd.1_Missense_Mutation_p.K209Q|RGR_uc001kde.1_Missense_Mutation_p.K205Q	NM_001012720	NP_001012738	P47804	RGR_HUMAN	retinal G-protein coupled receptor isoform 2	205	Cytoplasmic (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity|protein binding			ovary(1)	1						GAAACTGGGGAAGAGTGGCCA	0.363													28	21					0	0	0.00127121	0	0
LDB3	11155	broad.mit.edu	37	10	88439220	88439220	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:88439220G>A	uc001kdv.2	+	2	213	c.190G>A	c.(190-192)GAA>AAA	p.E64K	LDB3_uc010qml.1_Missense_Mutation_p.E64K|LDB3_uc010qmm.1_Missense_Mutation_p.E64K|LDB3_uc001kdu.2_Missense_Mutation_p.E64K|LDB3_uc009xsz.2_5'UTR|LDB3_uc001kdr.2_Missense_Mutation_p.E64K|LDB3_uc009xsy.2_Missense_Mutation_p.E64K|LDB3_uc001kds.2_Missense_Mutation_p.E64K|LDB3_uc001kdt.2_RNA	NM_007078	NP_009009	O75112	LDB3_HUMAN	LIM domain binding 3 isoform 1	64	PDZ.					cytoskeleton|perinuclear region of cytoplasm|pseudopodium	zinc ion binding			ovary(1)	1						GACCCACCTGGAAGCCCAGAA	0.602													28	22					0	0	0.00106085	0	0
AGAP11	119385	broad.mit.edu	37	10	88769434	88769434	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:88769434C>T	uc001kee.2	+	12	2629	c.1425C>T	c.(1423-1425)TCC>TCT	p.S475S	AGAP11_uc001kef.2_Intron	NM_133447	NP_597704	Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase	475					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						CACATGGCTCCCGTGAGGAGG	0.672													38	64					0	0	0.00195071	0	0
PAPSS2	9060	broad.mit.edu	37	10	89474791	89474791	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:89474791C>A	uc001kex.2	+	6	952	c.689C>A	c.(688-690)CCG>CAG	p.P230Q	PAPSS2_uc001kew.2_Missense_Mutation_p.P230Q|PAPSS2_uc009xtg.1_RNA	NM_004670	NP_004661	O95340	PAPS2_HUMAN	3'-phosphoadenosine 5'-phosphosulfate synthase 2	230	Adenylyl-sulfate kinase.				3'-phosphoadenosine 5'-phosphosulfate biosynthetic process|skeletal system development|sulfate assimilation|xenobiotic metabolic process	cytosol	adenylylsulfate kinase activity|ATP binding|protein binding|sulfate adenylyltransferase (ATP) activity			central_nervous_system(1)|skin(1)	2		Melanoma(5;0.019)|Colorectal(252;0.123)		UCEC - Uterine corpus endometrioid carcinoma (6;0.00164)|Colorectal(12;0.000323)|COAD - Colon adenocarcinoma(12;0.00124)		CTCTTTGTGCCGGAAAACAAA	0.378													12	17					4.93089e-13	1.35099e-12	0.00244969	1	0
CYP26C1	340665	broad.mit.edu	37	10	94822677	94822678	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:94822677_94822678GG>AA	uc010qns.1	+	3	630_631	c.630_631GG>AA	c.(628-633)CTGGCC>CTAACC	p.A211T	CYP26C1_uc009xud.2_RNA	NM_183374	NP_899230	Q6V0L0	CP26C_HUMAN	cytochrome P450, family 26, subfamily C,	211					anterior/posterior pattern formation|central nervous system development|negative regulation of retinoic acid receptor signaling pathway|neural crest cell development|organelle fusion|retinoic acid catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			central_nervous_system(1)	1		Colorectal(252;0.122)				GCGCCACGCTGGCCCGGACCTT	0.673													12	21					0	0	6.4e-05	0	0
PDE6C	5146	broad.mit.edu	37	10	95400711	95400711	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:95400711A>T	uc001kiu.3	+	14	1910	c.1772A>T	c.(1771-1773)GAA>GTA	p.E591V		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	591					visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				ACAGATCTCGAAGCCTTTGCC	0.348													13	18					0	0	0.00316338	0	0
PDE6C	5146	broad.mit.edu	37	10	95422929	95422929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:95422929G>A	uc001kiu.3	+	21	2650	c.2512G>A	c.(2512-2514)GAA>AAA	p.E838K		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	838					visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				AGGAGGAGCCGAAAAAGGTTA	0.428													9	10					0	0	0.000442599	0	0
PIPSL	266971	broad.mit.edu	37	10	95720783	95720783	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:95720783C>T	uc009xuj.2	-	1	890	c.371G>A	c.(370-372)GGA>GAA	p.G124E		NR_002319				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						ACCACTAGCTCCAGAGCTACA	0.502													15	14					0	0	0.00244969	0	0
CYP2C18	1562	broad.mit.edu	37	10	96447642	96447642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:96447642C>T	uc001kjv.3	+	2	610	c.284C>T	c.(283-285)TCT>TTT	p.S95F	CYP2C18_uc001kjw.3_Missense_Mutation_p.S95F|CYP2C19_uc009xus.1_5'Flank|CYP2C19_uc010qny.1_5'Flank	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	95					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		GAGGAGTTTTCTGGAAGAGGA	0.458													26	27					0	0	0.001512	0	0
CYP2C19	1557	broad.mit.edu	37	10	96493179	96493179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:96493179C>T	uc010qny.1	+	6	944	c.86C>T	c.(85-87)TCA>TTA	p.S29L	CYP2C18_uc001kjv.3_Silent_p.F425F|CYP2C18_uc001kjw.3_Silent_p.F366F|CYP2C19_uc009xus.1_Intron	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	Error:Variant_position_missing_in_P33261_after_alignment					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	GTGACTACTTCATGCCTTTCT	0.438													8	13					0	0	0.00307968	0	0
CYP2C19	1557	broad.mit.edu	37	10	96609702	96609702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:96609702C>T	uc010qnz.1	+	8	1178	c.1178C>T	c.(1177-1179)TCT>TTT	p.S393F	CYP2C19_uc010qny.1_Missense_Mutation_p.S371F	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	393					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	TCCCTCACTTCTGTGCTACAT	0.398													23	23					0	0	0.00395357	0	0
CYP2C9	1559	broad.mit.edu	37	10	96698552	96698552	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:96698552T>C	uc001kka.3	+	1	138	c.113T>C	c.(112-114)GTG>GCG	p.V38A	CYP2C9_uc009xut.2_Missense_Mutation_p.V38A|CYP2C9_uc001kjz.2_Missense_Mutation_p.V38A	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	38					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	CCTCTCCCAGTGATTGGAAAT	0.463													26	27					0	0	0.000878237	0	0
CYP2C9	1559	broad.mit.edu	37	10	96698566	96698566	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:96698566C>T	uc001kka.3	+	1	152	c.127C>T	c.(127-129)CTA>TTA	p.L43L	CYP2C9_uc009xut.2_Silent_p.L43L|CYP2C9_uc001kjz.2_Silent_p.L43L	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	43					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	TGGAAATATCCTACAGATAGG	0.433													18	30					0	0	0.00152264	0	0
CYP2C9	1559	broad.mit.edu	37	10	96701948	96701948	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:96701948G>A	uc001kka.3	+	3	357	c.332_splice	c.e3-1	p.G111_splice	CYP2C9_uc009xut.2_Splice_Site_p.G111_splice|CYP2C9_uc001kjz.2_Splice_Site_p.G111_splice	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,						exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	CTTCCTGTTAGGAATTGTTTT	0.532													14	12					0	0	0.00185496	0	0
CYP2C9	1559	broad.mit.edu	37	10	96707649	96707649	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:96707649G>A	uc001kka.3	+	4	620	c.595G>A	c.(595-597)GAA>AAA	p.E199K	CYP2C9_uc009xut.2_Missense_Mutation_p.E199K	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	199					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	TAACTTAATGGAAAAGTTGAA	0.383													11	11					0	0	0.000673444	0	0
CYP2C8	1558	broad.mit.edu	37	10	96824695	96824695	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:96824695G>A	uc001kkb.2	-	4	599	c.504C>T	c.(502-504)TTC>TTT	p.F168F	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Silent_p.F98F|CYP2C8_uc010qob.1_Silent_p.F82F|CYP2C8_uc010qoc.1_Silent_p.F66F|CYP2C8_uc010qod.1_Silent_p.F82F	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	168					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	AGCCCAGGATGAAAGTGGGAT	0.313													12	33					0	0	0.00185496	0	0
C10orf12	26148	broad.mit.edu	37	10	98741766	98741766	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:98741766C>T	uc001kmv.2	+	1	726	c.619C>T	c.(619-621)CGT>TGT	p.R207C	C10orf12_uc009xvg.1_Missense_Mutation_p.R517C	NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	207										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		GCCAACTGTTCGTACACTGGC	0.433													35	36					0	0	0.00111076	0	0
C10orf12	26148	broad.mit.edu	37	10	98744594	98744594	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:98744594C>T	uc001kmv.2	+	1	3554	c.3447C>T	c.(3445-3447)ATC>ATT	p.I1149I		NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	1149										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		AAGTGAAGATCCCTAAAAAGT	0.502													10	26					0	0	0.000978159	0	0
ARHGAP19	84986	broad.mit.edu	37	10	99025842	99025842	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:99025842G>A	uc001knb.2	-	2	126	c.97C>T	c.(97-99)CTT>TTT	p.L33F	ARHGAP19_uc001kmy.2_RNA|ARHGAP19_uc001kna.2_Missense_Mutation_p.L24F|ARHGAP19_uc009xvi.2_RNA|ARHGAP19_uc009xvj.2_Missense_Mutation_p.L33F|ARHGAP19_uc009xvk.2_Intron	NM_032900	NP_116289	Q14CB8	RHG19_HUMAN	Rho GTPase activating protein 19	33					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|nucleus	GTPase activator activity				0		Colorectal(252;0.0854)		Epithelial(162;7.65e-09)|all cancers(201;4.49e-07)		TGACCTCGAAGGGAAGAATCA	0.398													18	28					0	0	0.00121646	0	0
ABCC2	1244	broad.mit.edu	37	10	101563847	101563847	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:101563847T>G	uc001kqf.2	+	10	1420	c.1281T>G	c.(1279-1281)GAT>GAG	p.D427E		NM_000392	NP_000383	Q92887	MRP2_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP),	427	Cytoplasmic (By similarity).|ABC transmembrane type-1 1.					apical plasma membrane|integral to plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;2.77e-10)|all cancers(201;2.47e-08)	Adenosine triphosphate(DB00171)|Norgestimate(DB00957)|Pravastatin(DB00175)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	TGTCTGTGGATGCCCAGAAGC	0.458													13	22					0	0	0.00185496	0	0
PKD2L1	9033	broad.mit.edu	37	10	102089628	102089628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:102089628C>T	uc001kqx.1	-	1	616	c.233G>A	c.(232-234)AGA>AAA	p.R78K	PKD2L1_uc009xwm.1_Missense_Mutation_p.E24K	NM_016112	NP_057196	Q9P0L9	PK2L1_HUMAN	polycystic kidney disease 2-like 1	78	Cytoplasmic (Potential).				signal transduction	integral to membrane	calcium activated cation channel activity|calcium ion binding|cytoskeletal protein binding			ovary(4)	4		Colorectal(252;0.117)		Epithelial(162;6.15e-10)|all cancers(201;5.14e-08)		TCTGGTACCTCTGATGCCTTG	0.547													19	29					0	0	0.00152264	0	0
PPRC1	23082	broad.mit.edu	37	10	103899845	103899845	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:103899845C>T	uc001kum.2	+	5	1619	c.1580C>T	c.(1579-1581)GCC>GTC	p.A527V	PPRC1_uc001kun.2_Missense_Mutation_p.A407V|PPRC1_uc010qqj.1_Missense_Mutation_p.A527V|PPRC1_uc009xxa.2_RNA	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	527					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		TGGGCTCGGGCCTGGGCAGCT	0.542													24	39					0	0	0.000878237	0	0
PSD	5662	broad.mit.edu	37	10	104176661	104176661	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:104176661G>A	uc001kvg.1	-	2	662	c.135C>T	c.(133-135)TCC>TCT	p.S45S	PSD_uc001kvh.1_Intron|PSD_uc009xxd.1_Silent_p.S45S|PSD_uc001kvi.1_Silent_p.S45S|FBXL15_uc001kvj.1_5'Flank|FBXL15_uc001kvk.2_5'Flank	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	45	Pro-rich.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		GCCGTAGCAAGGAGCCTGTGC	0.692													11	9					0	0	0.000958276	0	0
TRIM8	81603	broad.mit.edu	37	10	104416920	104416920	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:104416920C>T	uc001kvz.2	+	6	1588	c.1465C>T	c.(1465-1467)CGC>TGC	p.R489C		NM_030912	NP_112174	Q9BZR9	TRIM8_HUMAN	tripartite motif-containing 8	489						cytoplasm|PML body	ligase activity|protein homodimerization activity|zinc ion binding			ovary(1)	1		Colorectal(252;0.122)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		GCCCTACCCCCGCTCCGGCCA	0.652													8	14					0	0	0.00307968	0	0
PDCD11	22984	broad.mit.edu	37	10	105174058	105174058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:105174058C>T	uc001kwy.1	+	11	1429	c.1342C>T	c.(1342-1344)CAT>TAT	p.H448Y		NM_014976	NP_055791	Q14690	RRP5_HUMAN	programmed cell death 11	448					mRNA processing|rRNA processing	nucleolus	RNA binding|transcription factor binding			ovary(2)|breast(2)|skin(2)|central_nervous_system(1)	7		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;7.21e-09)|all cancers(201;1.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		CCTTAGATATCATGACATCGA	0.438													8	15					0	0	0.000442599	0	0
NEURL	9148	broad.mit.edu	37	10	105330650	105330650	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:105330650C>T	uc001kxh.2	+	2	517	c.107C>T	c.(106-108)CCC>CTC	p.P36L		NM_004210	NP_004201	O76050	NEU1A_HUMAN	neuralized-like	36					nervous system development	perinuclear region of cytoplasm	zinc ion binding				0				Epithelial(162;2.12e-09)|all cancers(201;6.99e-08)|BRCA - Breast invasive adenocarcinoma(275;0.125)		GGCCCCTTCCCCGTCACTTCT	0.652													44	56					0	0	0.00361006	0	0
COL17A1	1308	broad.mit.edu	37	10	105800155	105800155	+	Silent	SNP	G	A	A	rs139467442	byFrequency	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:105800155G>A	uc001kxr.2	-	40	2884	c.2715C>T	c.(2713-2715)TCC>TCT	p.S905S		NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	905	Extracellular (Potential).|Triple-helical region.			S -> F (in Ref. 1; AAA35605 and 2; AAB51499).	cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		CTGGGGGGCCGGAGAGGAAGG	0.443													40	49					0	0	0.0025221	0	0
COL17A1	1308	broad.mit.edu	37	10	105824202	105824202	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:105824202C>T	uc001kxr.2	-	10	929	c.760G>A	c.(760-762)GGA>AGA	p.G254R	COL17A1_uc010qqv.1_Missense_Mutation_p.G238R|COL17A1_uc009xxp.1_Missense_Mutation_p.G254R	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	254	Cytoplasmic (Potential).|Nonhelical region (NC16).				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		GTACCTGATCCCGCAGAGTAG	0.597													16	10					0	0	0.00074312	0	0
C10orf79	80217	broad.mit.edu	37	10	105893452	105893452	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:105893452C>T	uc001kxw.2	-	35	4638	c.4522G>A	c.(4522-4524)GAG>AAG	p.E1508K	C10orf79_uc009xxq.2_Missense_Mutation_p.E787K	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	1508											0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		CTTTCCATCTCCATTTTCTTA	0.358													16	24					0	0	0.00400662	0	0
C10orf79	80217	broad.mit.edu	37	10	105938810	105938810	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:105938810C>T	uc001kxw.2	-	19	2553	c.2437G>A	c.(2437-2439)GGA>AGA	p.G813R	C10orf79_uc009xxq.2_Missense_Mutation_p.G121R|C10orf79_uc001kxx.3_Missense_Mutation_p.G814R	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	813	Potential.										0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		GATTTGATTCCTTGTTTTATC	0.303													14	17					0	0	0.00316338	0	0
C10orf79	80217	broad.mit.edu	37	10	105947241	105947241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:105947241G>A	uc001kxw.2	-	14	1813	c.1697C>T	c.(1696-1698)ACC>ATC	p.T566I	C10orf79_uc009xxq.2_5'Flank|C10orf79_uc001kxx.3_Missense_Mutation_p.T567I	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	566											0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		ATCAGCAAAGGTTGTGGAAAC	0.323													16	27					0	0	0.00074312	0	0
CCDC147	159686	broad.mit.edu	37	10	106118293	106118293	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:106118293T>A	uc001kyh.2	+	2	338	c.204T>A	c.(202-204)AAT>AAA	p.N68K		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	68										ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		GAGAGCTAAATGCAGAGATTG	0.433													11	18					0	0	0.000673444	0	0
SORCS3	22986	broad.mit.edu	37	10	107022168	107022168	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:107022168G>A	uc001kyi.1	+	26	3750	c.3523G>A	c.(3523-3525)GAA>AAA	p.E1175K		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	1175	Cytoplasmic (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		GAGCCAAAGTGAAAACGCCCC	0.507													10	19					0	0	0.000978159	0	0
SORCS1	114815	broad.mit.edu	37	10	108357117	108357117	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:108357117A>G	uc001kym.2	-	24	3265	c.3257T>C	c.(3256-3258)TTA>TCA	p.L1086S	SORCS1_uc001kyl.2_Missense_Mutation_p.L1086S|SORCS1_uc009xxs.2_Missense_Mutation_p.L1086S|SORCS1_uc001kyn.1_Missense_Mutation_p.L1086S|SORCS1_uc001kyo.2_Missense_Mutation_p.L1086S	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	1086	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		ACCCGCTGTTAAGTGAGCAGC	0.502													14	14					0	0	0.00074312	0	0
PRLHR	2834	broad.mit.edu	37	10	120353908	120353908	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:120353908G>A	uc001ldp.1	-	2	988	c.849C>T	c.(847-849)GTC>GTT	p.V283V		NM_004248	NP_004239	P49683	PRLHR_HUMAN	G protein-coupled receptor 10	283	Helical; Name=6; (Potential).				female pregnancy	integral to plasma membrane	neuropeptide Y receptor activity				0		Colorectal(252;0.0429)|Lung NSC(174;0.142)|all_lung(145;0.175)		all cancers(201;0.0166)		ACACCACCACGATCACCACCA	0.692													31	23					0	0	0.00111076	0	0
EIF3A	8661	broad.mit.edu	37	10	120801559	120801560	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:120801559_120801560GG>AA	uc001ldu.2	-	19	3618_3619	c.3472_3473CC>TT	c.(3472-3474)CCC>TTC	p.P1158F	EIF3A_uc010qsu.1_Missense_Mutation_p.P1124F|EIF3A_uc009xzg.1_Missense_Mutation_p.P197F	NM_003750	NP_003741	Q14152	EIF3A_HUMAN	eukaryotic translation initiation factor 3,	1158	Asp-rich.|25 X 10 AA approximate tandem repeats of [DE]-[DE]-[DE]-R-[SEVGFPILV]-[HPSN]- [RSW]-[RL]-[DRGTIHN]-[EPMANLGDT].|24.				formation of translation initiation complex	cytosol|eukaryotic translation initiation factor 3 complex	protein binding|structural molecule activity|translation initiation factor activity				0		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0236)		ACCCCGTCTGGGAAACCGATCA	0.475													20	73					0	0	6.4e-05	0	0
SEC23IP	11196	broad.mit.edu	37	10	121675306	121675306	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:121675306C>T	uc001leu.1	+	8	1521	c.1449C>T	c.(1447-1449)TTC>TTT	p.F483F	SEC23IP_uc010qtc.1_Silent_p.F272F	NM_007190	NP_009121	Q9Y6Y8	S23IP_HUMAN	Sec23-interacting protein p125	483					Golgi organization|intracellular protein transport	endoplasmic reticulum|ER to Golgi transport vesicle membrane|ER-Golgi intermediate compartment	metal ion binding			ovary(3)	3		Lung NSC(174;0.109)|all_lung(145;0.142)|all_neural(114;0.234)		all cancers(201;0.00515)		GGACACATTTCAAGAAATCTT	0.398													24	79					0	0	0.00332997	0	0
DMBT1	1755	broad.mit.edu	37	10	124358479	124358479	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:124358479G>A	uc001lgk.1	+	26	3252	c.3146G>A	c.(3145-3147)GGT>GAT	p.G1049D	DMBT1_uc001lgl.1_Missense_Mutation_p.G1039D|DMBT1_uc001lgm.1_Missense_Mutation_p.G550D|DMBT1_uc009xzz.1_Missense_Mutation_p.G1049D|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_Missense_Mutation_p.G10D	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1049	SRCR 8.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GCCCGGTTTGGTCAGGGCTCA	0.597													98	105					0	0	0.00361006	0	0
DMBT1	1755	broad.mit.edu	37	10	124380882	124380882	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:124380882G>A	uc001lgk.1	+	41	5313	c.5207G>A	c.(5206-5208)GGT>GAT	p.G1736D	DMBT1_uc001lgl.1_Missense_Mutation_p.G1726D|DMBT1_uc001lgm.1_Missense_Mutation_p.G1108D|DMBT1_uc009xzz.1_Missense_Mutation_p.G1736D|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_Missense_Mutation_p.G439D|DMBT1_uc009yac.1_Missense_Mutation_p.G50D	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1736	SRCR 13.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GAAGACGCTGGTGTCATCTGC	0.562													55	22					0	0	0.00361006	0	0
DMBT1	1755	broad.mit.edu	37	10	124390604	124390604	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:124390604G>A	uc001lgk.1	+	46	5872	c.5766G>A	c.(5764-5766)GTG>GTA	p.V1922V	DMBT1_uc001lgl.1_Silent_p.V1912V|DMBT1_uc001lgm.1_Silent_p.V1294V|DMBT1_uc009xzz.1_Silent_p.V1922V|DMBT1_uc010qtx.1_Silent_p.V642V|DMBT1_uc009yab.1_Silent_p.V625V|DMBT1_uc009yac.1_Silent_p.V216V	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1922	SRCR 14.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				AAGCTGAGGTGGTCTGCAGAC	0.532													42	19					0	0	0.0025221	0	0
CUZD1	50624	broad.mit.edu	37	10	124593228	124593228	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:124593228G>A	uc001lgq.2	-	8	1943	c.1611C>T	c.(1609-1611)CCC>CCT	p.P537P	CUZD1_uc001lgp.2_Silent_p.P256P|CUZD1_uc009yad.2_Silent_p.P256P|CUZD1_uc009yaf.2_Silent_p.P171P|CUZD1_uc001lgr.2_Silent_p.P256P|CUZD1_uc010qty.1_Silent_p.P256P|CUZD1_uc009yae.2_Silent_p.P256P|CUZD1_uc001lgs.2_Silent_p.P537P|CUZD1_uc010qtz.1_Silent_p.P537P	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	537	Extracellular (Potential).				cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		TCAGACGAATGGGTCCTATGA	0.418													31	118					0	0	0.00209593	0	0
DPYSL4	10570	broad.mit.edu	37	10	134014413	134014413	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:134014413G>A	uc009ybb.2	+	10	1190	c.1036G>A	c.(1036-1038)GAC>AAC	p.D346N		NM_006426	NP_006417	O14531	DPYL4_HUMAN	dihydropyrimidinase-like 4	346					axon guidance|pyrimidine base catabolic process	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			central_nervous_system(2)	2		all_cancers(35;4.33e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;7.21e-05)|Epithelial(32;8.01e-05)|all cancers(32;9.29e-05)|BRCA - Breast invasive adenocarcinoma(275;0.206)		TGTGGGCAAGGACAACTTCGC	0.647													15	41					0	0	0.00316338	0	0
PWWP2B	170394	broad.mit.edu	37	10	134218946	134218946	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:134218946C>T	uc001lll.3	+	2	971	c.942C>T	c.(940-942)CCC>CCT	p.P314P	PWWP2B_uc009ybe.2_Silent_p.P314P	NM_138499	NP_612508	Q6NUJ5	PWP2B_HUMAN	PWWP domain containing 2 isoform 1	314											0		all_cancers(35;6.69e-12)|all_epithelial(44;1.55e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.109)|Melanoma(40;0.123)|Glioma(114;0.203)|all_hematologic(284;0.224)		OV - Ovarian serous cystadenocarcinoma(35;7.49e-05)|Epithelial(32;0.00016)|all cancers(32;0.000186)		CCTCCATCCCCAAGTTGAAAC	0.731													6	33					0	0	0.00198382	0	0
INPP5A	3632	broad.mit.edu	37	10	134463968	134463968	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:134463968G>T	uc001llp.2	+	4	513	c.265G>T	c.(265-267)GTC>TTC	p.V89F	INPP5A_uc001llo.1_Missense_Mutation_p.V89F|INPP5A_uc001llq.2_Missense_Mutation_p.V41F	NM_005539	NP_005530	Q14642	I5P1_HUMAN	inositol polyphosphate-5-phosphatase A	89					cell communication	membrane	inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol-polyphosphate 5-phosphatase activity|PH domain binding			skin(1)	1		all_cancers(35;8.59e-13)|all_epithelial(44;5.49e-09)|Lung NSC(174;0.000854)|all_lung(145;0.00146)|all_neural(114;0.0299)|Colorectal(31;0.0599)|Breast(234;0.0849)|Melanoma(40;0.124)|all_hematologic(284;0.196)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;0.000102)|Epithelial(32;0.00023)|all cancers(32;0.000326)		CAGGGCTCGAGTCTACCTGGA	0.532													56	186					1.72039e-30	4.73592e-30	0.00361006	1	0
VENTX	27287	broad.mit.edu	37	10	135053291	135053291	+	Missense_Mutation	SNP	C	T	T	rs139243086		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:135053291C>T	uc010quy.1	+	2	364	c.353C>T	c.(352-354)CCT>CTT	p.P118L		NM_014468	NP_055283	O95231	VENTX_HUMAN	VENT homeobox	118	Homeobox.				multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(35;4.15e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;7.8e-06)|Epithelial(32;9.31e-06)|all cancers(32;1.19e-05)		TACCTGAGCCCTCTGGAGCGG	0.488													12	52					0	0	0.00316338	0	0
ECHS1	1892	broad.mit.edu	37	10	135179550	135179550	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr10:135179550G>A	uc001lmu.2	-	6	740	c.669C>T	c.(667-669)ATC>ATT	p.I223I		NM_004092	NP_004083	P30084	ECHM_HUMAN	mitochondrial short-chain enoyl-coenzyme A	223					fatty acid beta-oxidation	mitochondrial matrix	enoyl-CoA hydratase activity|protein binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		all cancers(32;1.62e-06)|OV - Ovarian serous cystadenocarcinoma(35;5.75e-06)|Epithelial(32;7.58e-06)		CTGCACACTGGATGGCTTCTT	0.448													19	77					0	0	0.000958276	0	0
EPS8L2	64787	broad.mit.edu	37	11	722701	722701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:722701C>T	uc001lqt.2	+	14	1484	c.1237C>T	c.(1237-1239)CCC>TCC	p.P413S	EPS8L2_uc001lqu.2_Missense_Mutation_p.P413S|EPS8L2_uc010qwk.1_Missense_Mutation_p.P429S|EPS8L2_uc001lqv.2_Missense_Mutation_p.P368S|EPS8L2_uc001lqw.2_Missense_Mutation_p.P25S|EPS8L2_uc001lqx.2_Missense_Mutation_p.P25S|EPS8L2_uc001lqy.2_5'Flank	NM_022772	NP_073609	Q9H6S3	ES8L2_HUMAN	epidermal growth factor receptor pathway	413						cytoplasm				pancreas(1)	1		all_cancers(49;1.24e-08)|all_epithelial(84;1.87e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;4.37e-27)|Epithelial(43;2.81e-26)|OV - Ovarian serous cystadenocarcinoma(40;1.33e-20)|BRCA - Breast invasive adenocarcinoma(625;4.29e-05)|Lung(200;0.0582)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GCCACAGGTGCCCCTCTACGT	0.692													5	9					0	0	0.000602214	0	0
MUC5B	727897	broad.mit.edu	37	11	1156224	1156224	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:1156224G>A	uc009ycr.1	+	6	675	c.549G>A	c.(547-549)CTG>CTA	p.L183L		NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	179	VWFD 1.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		AGGCCAGGCTGGGCCTTGTCC	0.662													15	23					0	0	0.00400662	0	0
MUC5B	727897	broad.mit.edu	37	11	1156647	1156647	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:1156647G>A	uc009ycr.1	+	7	790	c.664G>A	c.(664-666)GAG>AAG	p.E222K		NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	218	VWFD 1.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CGTGGTCAGCGAGCTCCTCTC	0.607													23	26					0	0	0.00332997	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1642939	1642939	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:1642939C>T	uc009ycy.1	-	3	610	c.523G>A	c.(523-525)GGA>AGA	p.G175R		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	189	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		CCACAGCCTCCTTTGGAGCCC	0.652													30	33					0	0	0.000953801	0	0
SYT8	90019	broad.mit.edu	37	11	1858068	1858068	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:1858068G>A	uc001lue.1	+	7	937	c.809G>A	c.(808-810)CGA>CAA	p.R270Q	SYT8_uc001lud.2_Missense_Mutation_p.R270Q|SYT8_uc001luf.1_Missense_Mutation_p.R256Q|TNNI2_uc010qxc.1_5'Flank|TNNI2_uc010qxd.1_5'Flank	NM_138567	NP_612634	Q8NBV8	SYT8_HUMAN	synaptotagmin VIII	270	C2 2.|Cytoplasmic (Potential).					acrosomal vesicle|integral to membrane|plasma membrane|synaptic vesicle	transporter activity			ovary(1)	1		all_epithelial(84;0.000138)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00136)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		CTGGAGGCTCGAGGCCTGCGT	0.687													11	9					0	0	0.000978159	0	0
TSSC4	10078	broad.mit.edu	37	11	2424683	2424683	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:2424683C>T	uc001lwj.2	+	4	1181	c.820C>T	c.(820-822)CAC>TAC	p.H274Y	TSSC4_uc001lwi.2_Missense_Mutation_p.H210Y|TSSC4_uc001lwk.2_Missense_Mutation_p.H274Y|TSSC4_uc001lwl.2_Missense_Mutation_p.H274Y	NM_005706	NP_005697	Q9Y5U2	TSSC4_HUMAN	tumor suppressing subtransferable candidate 4	274											0		all_epithelial(84;0.000161)|Breast(177;0.000962)|Medulloblastoma(188;0.00106)|Ovarian(85;0.0014)|all_neural(188;0.0137)|Lung NSC(207;0.209)		BRCA - Breast invasive adenocarcinoma(625;0.00145)|LUSC - Lung squamous cell carcinoma(625;0.19)		GTGGGGCAGCCACCATGGAGG	0.687													60	65					0	0	0.00361006	0	0
OR52M1	119772	broad.mit.edu	37	11	4566771	4566771	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:4566771C>T	uc010qyf.1	+	1	351	c.351C>T	c.(349-351)TTC>TTT	p.F117F		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	117	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		CAGGCATCTTCCTTGCCATGG	0.522													27	23					0	0	0.00106085	0	0
OR51G2	81282	broad.mit.edu	37	11	4936407	4936407	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:4936407G>A	uc001lzr.1	-	1	487	c.487C>T	c.(487-489)CCA>TCA	p.P163S		NM_001005238	NP_001005238	Q8NGK0	O51G2_HUMAN	olfactory receptor, family 51, subfamily G,	163	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		AAAGGTAATGGAAAAATGAGT	0.473													8	10					0	0	0.000274275	0	0
OR52E2	119678	broad.mit.edu	37	11	5080082	5080082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:5080082G>A	uc010qyw.1	-	1	776	c.776C>T	c.(775-777)TCC>TTC	p.S259F		NM_001005164	NP_001005164	Q8NGJ4	O52E2_HUMAN	olfactory receptor, family 52, subfamily E,	259	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.03e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.191)		AGTCATAAAGGAAAAGAGGGC	0.473													24	21					0	0	0.00332997	0	0
OR52A1	23538	broad.mit.edu	37	11	5172912	5172912	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:5172912G>A	uc010qyy.1	-	1	688	c.688C>T	c.(688-690)CGT>TGT	p.R230C		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGGGGCAAACGAAAAACTGTG	0.423													13	20					0	0	0.00185496	0	0
OR51V1	283111	broad.mit.edu	37	11	5221178	5221178	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:5221178G>A	uc010qyz.1	-	1	753	c.753C>T	c.(751-753)ATC>ATT	p.I251I		NM_001004760	NP_001004760	Q9H2C8	O51V1_HUMAN	olfactory receptor, family 51, subfamily V,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.83e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGATGTGGGAGATGCAGGTCT	0.483													14	18					0	0	0.00185496	0	0
OR51I1	390063	broad.mit.edu	37	11	5462682	5462682	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:5462682C>T	uc010qze.1	-	1	63	c.63G>A	c.(61-63)GGG>GGA	p.G21G	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005288	NP_001005288	Q9H343	O51I1_HUMAN	olfactory receptor, family 51, subfamily I,	21	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTGTTTGTATCCCAGGAATGC	0.522													8	8					0	0	0.00136819	0	0
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5655033	5655033	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:5655033G>A	uc001mbf.2	+	9	1730	c.1486_splice	c.e9-1	p.E496_splice	HBG2_uc001mak.1_Intron|TRIM34_uc001mbh.2_Splice_Site_p.E142_splice|TRIM34_uc009yeq.2_Splice_Site|TRIM34_uc001mbi.2_Splice_Site_p.E142_splice|TRIM34_uc001mbj.2_Splice_Site_p.E142_splice	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite							intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		CCTTCTCATAGGAGAAACTCC	0.438													16	14					0	0	0.00121646	0	0
HPX	3263	broad.mit.edu	37	11	6458377	6458377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:6458377C>T	uc001mdg.2	-	7	795	c.734G>A	c.(733-735)GGG>GAG	p.G245E	HPX_uc001mdf.2_5'UTR|HPX_uc009yfc.2_RNA	NM_000613	NP_000604	P02790	HEMO_HUMAN	hemopexin precursor	245					cellular iron ion homeostasis|interspecies interaction between organisms	extracellular space	heme transporter activity|metal ion binding|protein binding				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;5.46e-08)|BRCA - Breast invasive adenocarcinoma(625;0.19)		GGTACTGTTCCCATGGCCAGT	0.547													12	12					0	0	0.000978159	0	0
DCHS1	8642	broad.mit.edu	37	11	6650991	6650991	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:6650991G>A	uc001mem.1	-	11	5357	c.4947C>T	c.(4945-4947)TTC>TTT	p.F1649F		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	1649	Cadherin 15.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCTGCTGCTGGAAAGTAGGCG	0.642													14	16					0	0	0.00316338	0	0
PPFIBP2	8495	broad.mit.edu	37	11	7672110	7672110	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:7672110C>T	uc001mfj.3	+	22	2549	c.2161C>T	c.(2161-2163)CAC>TAC	p.H721Y	PPFIBP2_uc010rbb.1_Missense_Mutation_p.H644Y|PPFIBP2_uc001mfk.1_Intron|PPFIBP2_uc010rbc.1_Missense_Mutation_p.H655Y|PPFIBP2_uc010rbe.1_Missense_Mutation_p.H609Y|PPFIBP2_uc001mfl.3_Missense_Mutation_p.H578Y|PPFIBP2_uc009yfj.1_Missense_Mutation_p.H365Y	NM_003621	NP_003612	Q8ND30	LIPB2_HUMAN	PTPRF interacting protein, binding protein 2	721	SAM 3.				cell communication|DNA integration	intracellular	DNA binding|integrase activity|protein binding			ovary(2)|breast(2)	4				Epithelial(150;2.01e-07)|BRCA - Breast invasive adenocarcinoma(625;0.236)		GTGGTCCAACCACAGGGTGAT	0.522													32	33					0	0	0.00283554	0	0
OR10A6	390093	broad.mit.edu	37	11	7950003	7950003	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:7950003C>T	uc010rbh.1	-	1	207	c.207G>A	c.(205-207)GTG>GTA	p.V69V		NM_001004461	NP_001004461	Q8NH74	O10A6_HUMAN	olfactory receptor, family 10, subfamily A,	69	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AACTCAGGTCCACCACAGATA	0.443													19	25					0	0	0.00152264	0	0
TUB	7275	broad.mit.edu	37	11	8118838	8118838	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:8118838C>T	uc001mga.2	+	7	900	c.751C>T	c.(751-753)CTT>TTT	p.L251F	TUB_uc010rbk.1_Missense_Mutation_p.L257F|TUB_uc001mfy.2_Missense_Mutation_p.L306F	NM_177972	NP_813977	P50607	TUB_HUMAN	tubby isoform b	251					phagocytosis|positive regulation of phagocytosis|response to stimulus	cytoplasm|extracellular region|nucleus|plasma membrane				ovary(1)	1		all_lung(207;6.91e-20)|Lung NSC(207;3.36e-17)		Epithelial(150;1.69e-62)|BRCA - Breast invasive adenocarcinoma(625;8.54e-06)|LUSC - Lung squamous cell carcinoma(625;0.000184)		GGTCCAGGATCTTGAGGAGTT	0.597													22	30					0	0	0.00188189	0	0
ARNTL	406	broad.mit.edu	37	11	13387074	13387075	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:13387074_13387075GG>AA	uc001mkr.2	+	10	895_896	c.487_488GG>AA	c.(487-489)GGA>AAA	p.G163K	ARNTL_uc001mko.2_Missense_Mutation_p.G120K|ARNTL_uc001mkp.2_Missense_Mutation_p.G163K|ARNTL_uc001mkq.2_Missense_Mutation_p.G163K|ARNTL_uc001mks.2_Missense_Mutation_p.G120K|ARNTL_uc001mkt.2_Missense_Mutation_p.G163K|ARNTL_uc001mku.2_RNA|ARNTL_uc009ygm.1_Missense_Mutation_p.G120K|ARNTL_uc001mkv.1_Missense_Mutation_p.G120K|ARNTL_uc001mkw.2_Missense_Mutation_p.G120K|ARNTL_uc001mkx.2_Missense_Mutation_p.G161K	NM_001178	NP_001169	O00327	BMAL1_HUMAN	aryl hydrocarbon receptor nuclear	163	PAS 1.				circadian rhythm|positive regulation of transcription from RNA polymerase II promoter	transcription factor complex	aryl hydrocarbon receptor binding|DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity				0				Epithelial(150;0.0243)		GTTTGTCGTAGGATGTGACCGA	0.416													20	23					0	0	6.4e-05	0	0
INSC	387755	broad.mit.edu	37	11	15212315	15212315	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:15212315C>T	uc001mly.2	+	6	835	c.789C>T	c.(787-789)TTC>TTT	p.F263F	INSC_uc001mlz.2_Silent_p.F216F|INSC_uc001mma.2_Silent_p.F216F|INSC_uc010rcs.1_Silent_p.F251F|INSC_uc001mmb.2_Silent_p.F216F|INSC_uc001mmc.2_Silent_p.F216F	NM_001031853	NP_001027024	Q1MX18	INSC_HUMAN	inscuteable isoform a	263					cell differentiation|nervous system development	cytoplasm	binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)	5						GGAACCTGTTCAGCCTGACCC	0.507													34	42					0	0	0.00170553	0	0
ABCC8	6833	broad.mit.edu	37	11	17418804	17418804	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:17418804C>T	uc001mnc.2	-	32	4050	c.3924G>A	c.(3922-3924)CTG>CTA	p.L1308L		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	1308	Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	TCACAGCCCCCAGCTGGAGCT	0.612													43	57					0	0	0.0025221	0	0
ABCC8	6833	broad.mit.edu	37	11	17452451	17452451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:17452451G>A	uc001mnc.2	-	12	1853	c.1727C>T	c.(1726-1728)GCC>GTC	p.A576V	ABCC8_uc010rcy.1_Missense_Mutation_p.A575V	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	576	Extracellular (By similarity).|ABC transmembrane type-1 1.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	GGAGGCAAAGGCCACGGAGGG	0.597													149	186					0	0	0.00361006	0	0
SAA2	6289	broad.mit.edu	37	11	18269491	18269491	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:18269491G>A	uc001mnz.3	-	2	105	c.68C>T	c.(67-69)TCG>TTG	p.S23L	SAA2_uc009yhj.2_Missense_Mutation_p.S23L	NM_030754	NP_110381	P02735	SAA_HUMAN	serum amyloid A2 isoform a	23					acute-phase response|elevation of cytosolic calcium ion concentration|innate immune response|lymphocyte chemotaxis|macrophage chemotaxis|negative regulation of inflammatory response|neutrophil chemotaxis|platelet activation|positive regulation of cell adhesion|positive regulation of interleukin-1 secretion	high-density lipoprotein particle	G-protein-coupled receptor binding				0					Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	GCCAAGGAACGAAAAGAAGCT	0.498													19	23					0	0	0.00332997	0	0
E2F8	79733	broad.mit.edu	37	11	19246210	19246210	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:19246210G>A	uc001mpm.2	-	13	3121	c.2599C>T	c.(2599-2601)CAT>TAT	p.H867Y	E2F8_uc009yhv.2_RNA|E2F8_uc001mpn.3_Missense_Mutation_p.H867Y	NM_024680	NP_078956	A0AVK6	E2F8_HUMAN	E2F family member 8	867					cell cycle	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						GTTGATTAATGGACATCCTCT	0.378													15	19					0	0	0.000566183	0	0
ANO5	203859	broad.mit.edu	37	11	22276938	22276938	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:22276938G>A	uc001mqi.2	+	13	1519	c.1202G>A	c.(1201-1203)TGG>TAG	p.W401*	ANO5_uc001mqj.2_Nonsense_Mutation_p.W400*	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	401	Helical; (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						TTGGAGTTTTGGAAACAACGA	0.328													25	33					0	0	0.000720815	0	0
FSHB	2488	broad.mit.edu	37	11	30255173	30255173	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:30255173G>A	uc001msl.2	+	3	285	c.216G>A	c.(214-216)AAG>AAA	p.K72K	FSHB_uc001msm.2_Silent_p.K72K|FSHB_uc001msn.2_Silent_p.K72K	NM_000510	NP_000501	P01225	FSHB_HUMAN	follicle stimulating hormone, beta polypeptide	72					cellular nitrogen compound metabolic process|female gamete generation|female pregnancy|ovarian follicle development|peptide hormone processing|progesterone biosynthetic process|spermatogenesis|transforming growth factor beta receptor signaling pathway	cytoplasm|extracellular region|soluble fraction	follicle-stimulating hormone activity|protein heterodimerization activity	p.K72E(1)		ovary(3)	3					Follitropin beta(DB00066)|Thyrotropin Alfa(DB00024)|Urofollitropin(DB00094)	GTACCTTCAAGGAACTGGTAT	0.483													19	14					0	0	0.00152264	0	0
LRRC4C	57689	broad.mit.edu	37	11	40137564	40137564	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:40137564C>T	uc001mxa.1	-	2	2243	c.279G>A	c.(277-279)GTG>GTA	p.V93V	LRRC4C_uc001mxc.1_Silent_p.V89V|LRRC4C_uc001mxd.1_Silent_p.V89V|LRRC4C_uc001mxb.1_Silent_p.V89V	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	93	LRR 1.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				TGAAGCTGTTCACTTTGATGA	0.468													30	35					0	0	0.00283554	0	0
PACSIN3	29763	broad.mit.edu	37	11	47203992	47203992	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:47203992G>A	uc001ndw.2	-	4	511	c.173C>T	c.(172-174)GCT>GTT	p.A58V	PACSIN3_uc001ndx.2_Missense_Mutation_p.A58V|PACSIN3_uc001ndy.2_Missense_Mutation_p.A58V|PACSIN3_uc001ndz.2_RNA|PACSIN3_uc001nea.2_RNA	NM_016223	NP_057307	Q9UKS6	PACN3_HUMAN	protein kinase C and casein kinase substrate in	58	FCH.				endocytosis|negative regulation of endocytosis|positive regulation of membrane protein ectodomain proteolysis	cytoplasm|plasma membrane	cytoskeletal protein binding				0						GGCCCAGTCAGCCAACTGCTG	0.682													16	19					0	0	0.00316338	0	0
AGBL2	79841	broad.mit.edu	37	11	47711717	47711717	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:47711717G>A	uc001ngg.2	-	9	1642	c.1542C>T	c.(1540-1542)TCC>TCT	p.S514S	AGBL2_uc001ngf.2_RNA|AGBL2_uc010rhq.1_Silent_p.S476S|AGBL2_uc001ngh.1_Silent_p.S458S	NM_024783	NP_079059	Q5U5Z8	CBPC2_HUMAN	carboxypeptidase 2, cytosolic	514					proteolysis	cytosol	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2						TTCCGGCCAAGGAACACCGAT	0.443													15	26					0	0	0.00400662	0	0
NUP160	23279	broad.mit.edu	37	11	47862106	47862106	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:47862106C>T	uc001ngm.2	-	3	434	c.349G>A	c.(349-351)GAG>AAG	p.E117K	NUP160_uc009ylw.2_RNA|NUP160_uc001ngn.1_Missense_Mutation_p.E117K	NM_015231	NP_056046	Q12769	NU160_HUMAN	nucleoporin 160kDa	117					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7						TCCAGTGACTCCTCCATCAGC	0.388													29	29					0	0	0.00178596	0	0
OR4X2	119764	broad.mit.edu	37	11	48266932	48266932	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:48266932C>T	uc001ngs.1	+	1	277	c.277C>T	c.(277-279)CTT>TTT	p.L93F		NM_001004727	NP_001004727	Q8NGF9	OR4X2_HUMAN	olfactory receptor, family 4, subfamily X,	93	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CATGGCACAGCTTTTCTTCTT	0.517													19	38					0	0	0.00188189	0	0
OR4X2	119764	broad.mit.edu	37	11	48267404	48267404	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:48267404C>T	uc001ngs.1	+	1	749	c.749C>T	c.(748-750)TCT>TTT	p.S250F		NM_001004727	NP_001004727	Q8NGF9	OR4X2_HUMAN	olfactory receptor, family 4, subfamily X,	250	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTCTTCAACTCTCTGAGGCCT	0.522													5	13					0	0	0.00116845	0	0
OR4X1	390113	broad.mit.edu	37	11	48285953	48285953	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:48285953C>T	uc010rht.1	+	1	541	c.541C>T	c.(541-543)CCA>TCA	p.P181S		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	181	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						TGATGTCCACCCAGTGCTGGA	0.567													8	15					0	0	0.000673444	0	0
FOLH1	2346	broad.mit.edu	37	11	49175808	49175808	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:49175808C>T	uc001ngy.2	-	16	2121	c.1860G>A	c.(1858-1860)CAG>CAA	p.Q620Q	FOLH1_uc001ngx.2_Silent_p.Q52Q|FOLH1_uc001ngz.2_Silent_p.Q620Q|FOLH1_uc009yly.2_Silent_p.Q605Q|FOLH1_uc009ylz.2_Silent_p.Q605Q|FOLH1_uc009yma.2_Silent_p.Q312Q	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	620	Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	TCTTCATTTCCTGTGGATGTT	0.343													18	30					0	0	0.00121646	0	0
OR4C13	283092	broad.mit.edu	37	11	49974850	49974850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:49974850G>A	uc010rhz.1	+	1	876	c.876G>A	c.(874-876)ATG>ATA	p.M292I		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	292	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						ATGCTCAAATGAAAAATGCCA	0.383													6	16					0	0	0.00116845	0	0
OR4A15	81328	broad.mit.edu	37	11	55136139	55136139	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:55136139G>A	uc010rif.1	+	1	780	c.780G>A	c.(778-780)GGG>GGA	p.G260G		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	260	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GTTTGGAAGGGAAACGAAAAG	0.433													16	11					0	0	0.00316338	0	0
OR4C11	219429	broad.mit.edu	37	11	55371061	55371061	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:55371061G>A	uc010rii.1	-	1	789	c.789C>T	c.(787-789)TTC>TTT	p.F263F		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	263	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TGTCCATGGGGAAAGTGGTCG	0.433													12	2					0	0	0.00136819	0	0
OR5L1	219437	broad.mit.edu	37	11	55579002	55579002	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:55579002C>T	uc001nhw.1	+	1	60	c.60C>T	c.(58-60)GTC>GTT	p.V20V		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	20	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				TATCAGATGTCCCTGAGTTGA	0.458													53	54					0	0	0.00361006	0	0
OR5L1	219437	broad.mit.edu	37	11	55579799	55579799	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:55579799A>G	uc001nhw.1	+	1	857	c.857A>G	c.(856-858)AAC>AGC	p.N286S		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				CCTATGCTGAACTCTGTGATC	0.438													11	11					0	0	0.00136819	0	0
OR5D16	390144	broad.mit.edu	37	11	55606658	55606658	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:55606658C>T	uc010rio.1	+	1	431	c.431C>T	c.(430-432)GCC>GTC	p.A144V		NM_001005496	NP_001005496	Q8NGK9	OR5DG_HUMAN	olfactory receptor, family 5, subfamily D,	144	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_epithelial(135;0.208)				AAACTCTGTGCCATGCTGGTG	0.453													15	13					0	0	0.00400662	0	0
OR8J1	219477	broad.mit.edu	37	11	56128056	56128056	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:56128056G>A	uc010rjh.1	+	1	334	c.334G>A	c.(334-336)GTA>ATA	p.V112I		NM_001005205	NP_001005205	Q8NGP2	OR8J1_HUMAN	olfactory receptor, family 8, subfamily J,	112	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TGTATCGGAGGTAATCATGCT	0.463													23	23					0	0	0.000878237	0	0
OR8J1	219477	broad.mit.edu	37	11	56128572	56128572	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:56128572C>T	uc010rjh.1	+	1	850	c.850C>T	c.(850-852)CCT>TCT	p.P284S		NM_001005205	NP_001005205	Q8NGP2	OR8J1_HUMAN	olfactory receptor, family 8, subfamily J,	284	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					GTTGGTAATTCCTATGCTGAA	0.393													14	22					0	0	0.00244969	0	0
OR5R1	219479	broad.mit.edu	37	11	56185304	56185304	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:56185304C>T	uc010rji.1	-	1	405	c.405G>A	c.(403-405)CTG>CTA	p.L135L		NM_001004744	NP_001004744	Q8NH85	OR5R1_HUMAN	olfactory receptor, family 5, subfamily R,	135	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TTCTTGACATCAGTGTTGAAT	0.458													17	24					0	0	0.00074312	0	0
OR5M8	219484	broad.mit.edu	37	11	56258650	56258650	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:56258650G>A	uc001nix.1	-	1	197	c.197C>T	c.(196-198)TCC>TTC	p.S66F		NM_001005282	NP_001005282	Q8NGP6	OR5M8_HUMAN	olfactory receptor, family 5, subfamily M,	66	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	Esophageal squamous(21;0.00352)					ATCCACGAAGGATAAGTGGCT	0.488													21	33					0	0	0.00152264	0	0
GLYATL1	92292	broad.mit.edu	37	11	58723084	58723084	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:58723084G>A	uc001nnf.2	+	8	869	c.493G>A	c.(493-495)GAA>AAA	p.E165K	uc001nng.1_Intron|GLYATL1_uc001nnh.1_Missense_Mutation_p.E196K|GLYATL1_uc001nni.1_Missense_Mutation_p.E165K|GLYATL1_uc001nnj.1_Missense_Mutation_p.E165K			Q969I3	GLYL1_HUMAN	SubName: Full=Glycine acyltransferase family-C; SubName: Full=Glycine-N-acyltransferase-like 1, isoform CRA_a;	165						mitochondrion	glycine N-acyltransferase activity			ovary(1)	1					Glycine(DB00145)	TGTCTACAGTGAAACTCCCAA	0.428													11	14					0	0	0.00136819	0	0
CD5	921	broad.mit.edu	37	11	60889213	60889214	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:60889213_60889214GG>AA	uc009ynk.2	+	6	1039_1040	c.936_937GG>AA	c.(934-939)TGGGAG>TGAAAG	p.312_313WE>*K		NM_014207	NP_055022	P06127	CD5_HUMAN	CD5 molecule precursor	312_313	Extracellular (Potential).|SRCR 3.				cell proliferation|cell recognition	integral to plasma membrane	scavenger receptor activity			ovary(1)	1		all_lung(304;5.94e-05)|Lung NSC(402;7.26e-05)		BRCA - Breast invasive adenocarcinoma(625;0.000946)|Lung(977;0.0086)|LUSC - Lung squamous cell carcinoma(625;0.0528)		CGCTGCGGTGGGAGGAGGTGTG	0.653													11	17					0	0	6.4e-05	0	0
DDB1	1642	broad.mit.edu	37	11	61070583	61070583	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:61070583G>A	uc001nrc.3	-	23	3103	c.2877C>T	c.(2875-2877)ATC>ATT	p.I959I	DDB1_uc010rle.1_Silent_p.I270I|DDB1_uc010rlf.1_Silent_p.I959I	NM_001923	NP_001914	Q16531	DDB1_HUMAN	damage-specific DNA binding protein 1	959	Interaction with CDT1 and CUL4A.				cell cycle checkpoint|interspecies interaction between organisms|nucleotide-excision repair, DNA damage removal|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex|Cul4B-RING ubiquitin ligase complex|cytoplasm|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|lung(1)|central_nervous_system(1)	4						CATCATCCAAGATTTCCACAG	0.448								NER					34	43					0	0	0.00128727	0	0
FADS3	3995	broad.mit.edu	37	11	61645658	61645658	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:61645658G>A	uc001nsm.2	-	6	930	c.777C>T	c.(775-777)CCC>CCT	p.P259P	FADS3_uc001nsn.2_Silent_p.P135P	NM_021727	NP_068373	Q9Y5Q0	FADS3_HUMAN	fatty acid desaturase 3	259	Cytoplasmic (Potential).				electron transport chain|transport|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|membrane fraction	heme binding|oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water			ovary(1)|pancreas(1)	2						GCTGGTTGTAGGGTAGGTATC	0.612													24	28					0	0	0.00127121	0	0
INTS5	80789	broad.mit.edu	37	11	62414849	62414849	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:62414849G>A	uc001nud.2	-	2	2756	c.2703C>T	c.(2701-2703)CCC>CCT	p.P901P	GANAB_uc001nua.2_5'Flank|GANAB_uc001nub.2_5'Flank|GANAB_uc001nuc.2_5'Flank|GANAB_uc010rma.1_5'Flank|GANAB_uc010rmb.1_5'Flank	NM_030628	NP_085131	Q6P9B9	INT5_HUMAN	integrator complex subunit 5	901					snRNA processing	integral to membrane|integrator complex	protein binding			ovary(2)	2						CCAGGTGCCAGGGGGAGTGGG	0.632													37	39					0	0	0.00428921	0	0
SLC22A6	9356	broad.mit.edu	37	11	62747342	62747342	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:62747342C>T	uc001nwk.2	-	7	1423	c.1116G>A	c.(1114-1116)GTG>GTA	p.V372V	SLC22A6_uc001nwl.2_Silent_p.V372V|SLC22A6_uc001nwj.2_Silent_p.V372V|SLC22A6_uc001nwm.2_Silent_p.V372V	NM_004790	NP_004781	Q4U2R8	S22A6_HUMAN	solute carrier family 22 member 6 isoform a	372	Helical; (Potential).				alpha-ketoglutarate transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|protein binding				0						CACCAAAGATCACCTGGATTA	0.567													23	22					0	0	0.00395357	0	0
SLC22A25	387601	broad.mit.edu	37	11	62932071	62932071	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:62932071C>T	uc001nwr.1	-	8	1321	c.1321G>A	c.(1321-1323)GGT>AGT	p.G441S	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	441	Helical; Name=10; (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						GCTCCCACACCCAGGGTTGCC	0.478													10	16					0	0	0.000673444	0	0
SLC22A9	114571	broad.mit.edu	37	11	63149660	63149660	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:63149660G>A	uc001nww.2	+	6	1252	c.984G>A	c.(982-984)CTG>CTA	p.L328L	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	328	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						AAAAAGAACTGGAGGCAGCAC	0.408													18	28					0	0	0.000958276	0	0
FLRT1	23769	broad.mit.edu	37	11	63885213	63885213	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:63885213T>C	uc001nyi.1	+	2	1815	c.1474T>C	c.(1474-1476)TAC>CAC	p.Y492H	MACROD1_uc001nyh.2_Intron	NM_013280	NP_037412	Q9NZU1	FLRT1_HUMAN	fibronectin leucine rich transmembrane protein	464	Fibronectin type-III.|Extracellular (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity				0						CAAGACAGAGTACCTGCTGAC	0.622													11	11					0	0	0.000978159	0	0
CCDC88B	283234	broad.mit.edu	37	11	64111792	64111792	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:64111792C>T	uc001nzy.2	+	14	1823	c.1779C>T	c.(1777-1779)GGC>GGT	p.G593G	CCDC88B_uc009ypo.1_Silent_p.G590G|CCDC88B_uc001nzz.1_Silent_p.G242G	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	593					microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						AGAAGGCTGGCCGTAGATCCT	0.642													8	10					0	0	0.000442599	0	0
ATG2A	23130	broad.mit.edu	37	11	64681835	64681835	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:64681835G>A	uc001obx.2	-	2	424	c.309C>T	c.(307-309)CTC>CTT	p.L103L	ATG2A_uc010rnt.1_Silent_p.L103L	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	103							protein binding			ovary(1)|central_nervous_system(1)	2						GCTGCAAGGTGAGCTGGAGGC	0.711													6	5					0	0	0.00198382	0	0
MAP3K11	4296	broad.mit.edu	37	11	65367011	65367011	+	Missense_Mutation	SNP	G	A	A	rs113014372		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:65367011G>A	uc001oew.2	-	9	2553	c.2060C>T	c.(2059-2061)CCG>CTG	p.P687L	MAP3K11_uc001oev.2_Missense_Mutation_p.P103L|MAP3K11_uc010rol.1_Missense_Mutation_p.P430L|MAP3K11_uc001oex.1_Missense_Mutation_p.P194L	NM_002419	NP_002410	Q16584	M3K11_HUMAN	mitogen-activated protein kinase kinase kinase	687	Pro-rich.				activation of JUN kinase activity|cell proliferation|G1 phase of mitotic cell cycle|microtubule-based process|positive regulation of JNK cascade|protein autophosphorylation	centrosome|microtubule	ATP binding|JUN kinase kinase kinase activity|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity			breast(3)|lung(1)|central_nervous_system(1)|skin(1)	6						CGGCTCGGTCGGGCAGGGCGC	0.736													23	19					0	0	0.000878237	0	0
SSH3	54961	broad.mit.edu	37	11	67077398	67077398	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:67077398C>T	uc001okj.2	+	12	1546	c.1368C>T	c.(1366-1368)TTC>TTT	p.F456F	SSH3_uc001okk.2_RNA|SSH3_uc001okl.2_Silent_p.F310F	NM_017857	NP_060327	Q8TE77	SSH3_HUMAN	slingshot homolog 3	456	Tyrosine-protein phosphatase.				regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton|nucleus	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			ACCCTGGCTTCCTGCGCCAGC	0.662													18	21					0	0	0.000566183	0	0
CABP2	51475	broad.mit.edu	37	11	67287409	67287409	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:67287409G>A	uc001omc.1	-	6	594	c.492C>T	c.(490-492)TTC>TTT	p.F164F	CABP2_uc001omd.1_Silent_p.F107F|CABP2_uc001ome.1_Silent_p.F170F	NM_016366	NP_057450	Q9NPB3	CABP2_HUMAN	calcium binding protein 2 isoform 1	164	EF-hand 3.				signal transduction	Golgi apparatus|perinuclear region of cytoplasm|plasma membrane	calcium ion binding			skin(1)	1						CATTGGTGTCGAACTGTGGCG	0.697													7	12					0	0	0.00307968	0	0
SAPS3	55291	broad.mit.edu	37	11	68341637	68341637	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:68341637C>T	uc001onw.2	+	13	1671	c.1404C>T	c.(1402-1404)ATC>ATT	p.I468I	SAPS3_uc001onv.2_Silent_p.I468I|SAPS3_uc001ony.3_Silent_p.I468I|SAPS3_uc001onx.2_Silent_p.I468I|SAPS3_uc009ysh.2_Silent_p.I417I|SAPS3_uc001onu.2_Silent_p.I417I|SAPS3_uc010rqc.1_Silent_p.I236I|SAPS3_uc010rqd.1_Silent_p.I180I|SAPS3_uc001onz.2_5'Flank	NM_001164161	NP_001157633	Q5H9R7	PP6R3_HUMAN	SAPS domain family, member 3 isoform 6	468					regulation of phosphoprotein phosphatase activity	cytoplasm|nucleus	protein phosphatase binding				0			LUAD - Lung adenocarcinoma(13;0.102)			CTAACTGTATCGTGCACAGCA	0.448													18	22					0	0	0.000958276	0	0
SHANK2	22941	broad.mit.edu	37	11	70348903	70348903	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:70348903T>A	uc001oqc.2	-	15	2273	c.2195A>T	c.(2194-2196)AAA>ATA	p.K732I	SHANK2_uc010rqn.1_Missense_Mutation_p.K144I|SHANK2_uc001opz.2_Missense_Mutation_p.K144I|uc009ysn.1_Intron|SHANK2_uc010rqp.1_Missense_Mutation_p.K144I|SHANK2_uc001opy.2_5'Flank|SHANK2_uc010rqo.1_5'Flank	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	353					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			GCATGTACCTTTCTTCCTGGC	0.667													8	9					0	0	0.000442599	0	0
SHANK2	22941	broad.mit.edu	37	11	70506017	70506017	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:70506017G>A	uc001oqc.2	-	14	2055	c.1977C>T	c.(1975-1977)TTC>TTT	p.F659F	SHANK2_uc010rqn.1_Silent_p.F71F|SHANK2_uc001opz.2_Silent_p.F71F|uc009ysn.1_Intron|SHANK2_uc010rqp.1_Silent_p.F71F	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	280	PDZ.				intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			GTAGGGCTGGGAAAGCCGGTG	0.552													18	15					0	0	0.000958276	0	0
DHCR7	1717	broad.mit.edu	37	11	71152291	71152291	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:71152291G>A	uc001oqk.2	-	6	858	c.608C>T	c.(607-609)CCC>CTC	p.P203L	DHCR7_uc001oql.2_Missense_Mutation_p.P203L	NM_001163817	NP_001157289	Q9UBM7	DHCR7_HUMAN	7-dehydrocholesterol reductase	203					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane|nuclear outer membrane	7-dehydrocholesterol reductase activity|protein binding			ovary(1)|liver(1)	2					NADH(DB00157)	GGCGCTGGTGGGGAAGAAGTA	0.577									Smith-Lemli-Opitz_syndrome				12	29					0	0	0.00136819	0	0
ARAP1	116985	broad.mit.edu	37	11	72404832	72404832	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:72404832G>A	uc001osu.2	-	28	3902	c.3713C>T	c.(3712-3714)GCG>GTG	p.A1238V	ARAP1_uc001osv.2_Missense_Mutation_p.A1238V|ARAP1_uc001osr.2_Missense_Mutation_p.A998V|ARAP1_uc001oss.2_Missense_Mutation_p.A993V|ARAP1_uc009yth.2_Missense_Mutation_p.A932V|ARAP1_uc010rre.1_Missense_Mutation_p.A993V	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1238	Ras-associating.				actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						CACCTTCTCCGCAAAGTGCAG	0.627													18	17					0	0	0.00152264	0	0
DNAJB13	374407	broad.mit.edu	37	11	73676029	73676029	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:73676029C>T	uc001ouo.2	+	4	1192	c.441C>T	c.(439-441)TCC>TCT	p.S147S		NM_153614	NP_705842	P59910	DJB13_HUMAN	testis spermatogenesis apoptosis-related protein	147					apoptosis|protein folding|spermatogenesis		heat shock protein binding|unfolded protein binding				0	Breast(11;7.42e-05)					TCTACCTGTCCCTGGAGGACT	0.537											OREG0021218	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	20					0	0	0.000978159	0	0
SLCO2B1	11309	broad.mit.edu	37	11	74907720	74907720	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:74907720G>A	uc001owb.2	+	10	1982	c.1595G>A	c.(1594-1596)AGC>AAC	p.S532N	SLCO2B1_uc010rrq.1_Missense_Mutation_p.S277N|SLCO2B1_uc010rrr.1_Missense_Mutation_p.S388N|SLCO2B1_uc010rrs.1_Missense_Mutation_p.S416N|SLCO2B1_uc001owc.2_Missense_Mutation_p.S305N|SLCO2B1_uc001owd.2_Missense_Mutation_p.S510N	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	532	Extracellular (Potential).|Kazal-like.				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	CTGGACAACAGCCAGGTGAGT	0.602													8	14					0	0	0.00307968	0	0
CAPN5	726	broad.mit.edu	37	11	76823638	76823639	+	Missense_Mutation	DNP	AT	TA	TA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:76823638_76823639AT>TA	uc001oxx.2	+	4	486_487	c.301_302AT>TA	c.(301-303)ATC>TAC	p.I101Y	CAPN5_uc009yup.2_Missense_Mutation_p.I141Y|CAPN5_uc009yuq.2_Missense_Mutation_p.I137Y|CAPN5_uc001oxy.2_Missense_Mutation_p.I141Y	NM_004055	NP_004046	O15484	CAN5_HUMAN	calpain 5	101	Calpain catalytic.				proteolysis|signal transduction	intracellular	calcium-dependent cysteine-type endopeptidase activity				0						TACCCAGGTCATCCCAGACTGG	0.614													8	16					0	0	6.4e-05	0	0
ODZ4	26011	broad.mit.edu	37	11	78419499	78419499	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:78419499G>A	uc001ozl.3	-	27	4579	c.4116C>T	c.(4114-4116)ATC>ATT	p.I1372I		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1372	Extracellular (Potential).|NHL 3.				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						CATTCTGATCGATGCGTCTGA	0.507													12	13					0	0	0.00136819	0	0
CCDC83	220047	broad.mit.edu	37	11	85597391	85597391	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:85597391G>A	uc001pbh.1	+	5	1004	c.492G>A	c.(490-492)GAG>GAA	p.E164E	CCDC83_uc001pbg.1_Silent_p.E164E|CCDC83_uc001pbi.1_RNA|CCDC83_uc001pbj.1_Intron	NM_173556	NP_775827	Q8IWF9	CCD83_HUMAN	coiled-coil domain containing 83	164	Potential.									skin(1)	1		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				CAGTTAAAGAGAATGCAGAGA	0.363													6	9					0	0	0.00116845	0	0
NOX4	50507	broad.mit.edu	37	11	89135579	89135579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:89135579C>T	uc001pct.2	-	9	1000	c.761G>A	c.(760-762)GGA>GAA	p.G254E	NOX4_uc009yvr.2_Missense_Mutation_p.G229E|NOX4_uc001pcu.2_Missense_Mutation_p.G180E|NOX4_uc001pcw.2_Intron|NOX4_uc001pcx.2_Intron|NOX4_uc001pcv.2_Missense_Mutation_p.G254E|NOX4_uc009yvo.2_Intron|NOX4_uc010rtu.1_Missense_Mutation_p.G88E|NOX4_uc009yvp.2_Intron|NOX4_uc010rtv.1_Missense_Mutation_p.G230E|NOX4_uc009yvq.2_Missense_Mutation_p.G230E|NOX4_uc009yvs.1_RNA	NM_016931	NP_058627	Q9NPH5	NOX4_HUMAN	NADPH oxidase 4 isoform a	254	Extracellular (Potential).|Ferric oxidoreductase.|Mediates interaction with TLR4.				cell aging|cell morphogenesis|inflammatory response|negative regulation of cell proliferation|superoxide anion generation	endoplasmic reticulum membrane|focal adhesion|integral to membrane|nucleus	electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|nucleotide binding|oxygen sensor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.011)				TTTTGAAAATCCTTCAGGGAA	0.423													22	27					0	0	0.00278032	0	0
FAT3	120114	broad.mit.edu	37	11	92086899	92086899	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:92086899G>A	uc001pdj.3	+	1	1638	c.1621G>A	c.(1621-1623)GAA>AAA	p.E541K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	541	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ATCCTCCCCAGAAATTTACAG	0.398										TCGA Ovarian(4;0.039)			114	118					0	0	0.00361006	0	0
FAT3	120114	broad.mit.edu	37	11	92087984	92087984	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:92087984G>A	uc001pdj.3	+	1	2723	c.2706G>A	c.(2704-2706)TTG>TTA	p.L902L		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	902	Cadherin 8.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ATTATTCTTTGAAAATAGAAG	0.438										TCGA Ovarian(4;0.039)			85	144					0	0	0.00361006	0	0
FAT3	120114	broad.mit.edu	37	11	92533807	92533807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:92533807G>A	uc001pdj.3	+	9	7645	c.7628G>A	c.(7627-7629)CGA>CAA	p.R2543Q		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2543	Cadherin 23.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GCCAAGGATCGATTCCTCATA	0.483										TCGA Ovarian(4;0.039)			123	168					0	0	0.00361006	0	0
HEPHL1	341208	broad.mit.edu	37	11	93826760	93826760	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:93826760G>A	uc001pep.2	+	13	2545	c.2388G>A	c.(2386-2388)GTG>GTA	p.V796V	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	796	Plastocyanin-like 5.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				GAGAATTTGTGGAGATCAAAG	0.478													33	36					0	0	0.00209593	0	0
HEPHL1	341208	broad.mit.edu	37	11	93837822	93837822	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:93837822C>T	uc001pep.2	+	16	2968	c.2811C>T	c.(2809-2811)TCC>TCT	p.S937S	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	937	Extracellular (Potential).|Plastocyanin-like 6.				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				AGAATGAATCCTGGTATCTGG	0.353													45	46					0	0	0.00361006	0	0
PANX1	24145	broad.mit.edu	37	11	93911716	93911716	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:93911716G>A	uc001per.2	+	3	888	c.503G>A	c.(502-504)GGA>GAA	p.G168E	PANX1_uc001peq.2_Missense_Mutation_p.G168E	NM_015368	NP_056183	Q96RD7	PANX1_HUMAN	pannexin 1	168	Cytoplasmic (Potential).				positive regulation of interleukin-1 beta secretion|protein hexamerization|synaptic transmission	bleb|endoplasmic reticulum membrane|gap junction|integral to membrane	calcium channel activity|gap junction hemi-channel activity|leak channel activity|receptor binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				ATGAGAGATGGAGCCTGCTCA	0.473													12	13					0	0	0.00244969	0	0
CNTN5	53942	broad.mit.edu	37	11	100211914	100211914	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:100211914G>A	uc001pga.2	+	23	3346	c.3007G>A	c.(3007-3009)GAA>AAA	p.E1003K	CNTN5_uc001pgb.2_Missense_Mutation_p.E929K|CNTN5_uc010ruk.1_Missense_Mutation_p.E274K	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	1003	Fibronectin type-III 4.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		ATTAGCCAACGAATCTGAAGT	0.433													22	41					0	0	0.00278032	0	0
TRPC6	7225	broad.mit.edu	37	11	101347198	101347198	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:101347198C>T	uc001pgk.3	-	6	2003	c.1578G>A	c.(1576-1578)TGG>TGA	p.W526*	TRPC6_uc009ywy.2_Nonsense_Mutation_p.W410*|TRPC6_uc009ywz.1_Nonsense_Mutation_p.W471*	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	526	Helical; (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		CAAGCATGTTCCACAACTCAA	0.413													22	24					0	0	0.00152264	0	0
MMP27	64066	broad.mit.edu	37	11	102573820	102573820	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:102573820C>T	uc001phd.1	-	3	394	c.371G>A	c.(370-372)CGA>CAA	p.R124Q		NM_022122	NP_071405	Q9H306	MMP27_HUMAN	matrix metalloproteinase 27 precursor	124					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(8;0.000843)|all_epithelial(12;0.00362)|Lung NSC(15;0.21)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0509)|Lung(13;0.0696)|LUSC - Lung squamous cell carcinoma(19;0.13)|all cancers(10;0.176)	BRCA - Breast invasive adenocarcinoma(274;0.0151)		CACAGCAGCTCGTGCCATATC	0.358													31	24					0	0	0.00327116	0	0
MMP12	4321	broad.mit.edu	37	11	102733896	102733896	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:102733896C>T	uc001phk.2	-	11	1393	c.1348G>A	c.(1348-1350)GAA>AAA	p.E450K		NM_002426	NP_002417	P39900	MMP12_HUMAN	matrix metalloproteinase 12 preproprotein	450	Hemopexin-like 4.				positive regulation of epithelial cell proliferation involved in wound healing|proteolysis|wound healing, spreading of epidermal cells	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.014)	Acetohydroxamic Acid(DB00551)	AAGTCATATTCAAATTGGTTA	0.313													34	32					0	0	0.00148497	0	0
DDI1	414301	broad.mit.edu	37	11	103908105	103908105	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:103908105G>A	uc001phr.2	+	1	798	c.555G>A	c.(553-555)GAG>GAA	p.E185E	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	185					proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		TGCTGATGGAGCAGCAAAGGG	0.567													21	30					0	0	0.00152264	0	0
ATM	472	broad.mit.edu	37	11	108115720	108115720	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:108115720C>T	uc001pkb.1	+	7	1253	c.868C>T	c.(868-870)CAT>TAT	p.H290Y	ATM_uc009yxr.1_Missense_Mutation_p.H290Y	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	290					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		AATTTATATCCATCATCCGAA	0.294			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			8	27					0	0	0.000274275	0	0
TTC12	54970	broad.mit.edu	37	11	113210067	113210067	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:113210067G>C	uc001pnu.2	+	10	802	c.697G>C	c.(697-699)GAA>CAA	p.E233Q	TTC12_uc001pnv.2_Missense_Mutation_p.E239Q|TTC12_uc001pnw.2_RNA|TTC12_uc001pnx.2_Missense_Mutation_p.E83Q	NM_017868	NP_060338	Q9H892	TTC12_HUMAN	tetratricopeptide repeat domain 12	233							binding			pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4		all_cancers(61;2.73e-16)|all_epithelial(67;8.64e-10)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.183)|Renal(330;0.187)		BRCA - Breast invasive adenocarcinoma(274;5.3e-06)|Epithelial(105;8.37e-05)|all cancers(92;0.000694)		GGAAGCCCACGAACTGCTGGA	0.463													22	37					0	0	0.00278032	0	0
ANKK1	255239	broad.mit.edu	37	11	113270750	113270750	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:113270750G>A	uc001pny.2	+	8	2153	c.2059G>A	c.(2059-2061)GCC>ACC	p.A687T		NM_178510	NP_848605	Q8NFD2	ANKK1_HUMAN	ankyrin repeat and kinase domain containing 1	687	ANK 10.						ATP binding|protein serine/threonine kinase activity	p.A687A(1)		lung(5)|stomach(1)|ovary(1)|breast(1)	8		all_cancers(61;1.53e-11)|all_epithelial(67;3e-06)|Melanoma(852;4.04e-05)|all_hematologic(158;0.000315)|Acute lymphoblastic leukemia(157;0.000966)|Breast(348;0.0461)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Prostate(24;0.194)		BRCA - Breast invasive adenocarcinoma(274;4.82e-06)|Epithelial(105;5.41e-05)|all cancers(92;0.000442)|OV - Ovarian serous cystadenocarcinoma(223;0.238)		AAATGTCCACGCCCGCAACAA	0.632													17	14					0	0	0.000958276	0	0
BUD13	84811	broad.mit.edu	37	11	116628539	116628539	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:116628539C>T	uc001ppn.2	-	8	1661	c.1627G>A	c.(1627-1629)GAC>AAC	p.D543N	BUD13_uc001ppo.2_Missense_Mutation_p.D409N	NM_032725	NP_116114	Q9BRD0	BUD13_HUMAN	BUD13 homolog isoform 1	543										large_intestine(1)|pancreas(1)	2	all_hematologic(175;0.0487)	all_cancers(61;1.72e-06)|all_epithelial(67;0.000735)|Melanoma(852;0.022)|Acute lymphoblastic leukemia(157;0.0255)|Medulloblastoma(222;0.0523)|Breast(348;0.056)|all_hematologic(158;0.0588)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;5.81e-06)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.154)		GCCATAGGGTCCCCCTCTCTT	0.453													191	251					0	0	0.00361006	0	0
RNF214	257160	broad.mit.edu	37	11	117105018	117105018	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:117105018G>A	uc001pqt.2	+	2	75	c.30G>A	c.(28-30)GTG>GTA	p.V10V	PCSK7_uc001pqr.2_5'Flank|RNF214_uc001pqu.2_Silent_p.V10V|RNF214_uc010rxf.1_Silent_p.V10V	NM_207343	NP_997226	Q8ND24	RN214_HUMAN	ring finger protein 214	10							zinc ion binding				0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.88e-05)|Epithelial(105;0.000397)|all cancers(92;0.00258)		CTGGTGTTGTGGCCAATGCCC	0.458													40	48					0	0	0.00361006	0	0
TMPRSS4	56649	broad.mit.edu	37	11	117969729	117969729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:117969729C>T	uc010rxo.1	+	3	364	c.73C>T	c.(73-75)CCC>TCC	p.P25S	TMPRSS4_uc010rxp.1_Missense_Mutation_p.P25S|TMPRSS4_uc010rxq.1_5'UTR|TMPRSS4_uc010rxr.1_5'UTR|TMPRSS4_uc010rxs.1_Intron|TMPRSS4_uc009yzu.2_RNA|TMPRSS4_uc010rxt.1_5'UTR	NM_019894	NP_063947	Q9NRS4	TMPS4_HUMAN	transmembrane protease, serine 4 isoform 1	25	Cytoplasmic (Potential).				proteolysis	integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0431)|all_hematologic(192;0.164)|Breast(348;0.183)|all_neural(223;0.238)		BRCA - Breast invasive adenocarcinoma(274;4.16e-05)|Epithelial(105;0.00204)		ACCCCGTATCCCCATGGAGAC	0.537													22	24					0	0	0.00278032	0	0
MLL	4297	broad.mit.edu	37	11	118365450	118365450	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:118365450C>T	uc001pta.2	+	18	5345	c.5322C>T	c.(5320-5322)TCC>TCT	p.S1774S	MLL_uc001ptb.2_Silent_p.S1777S	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1774					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		TCAAAAAGTCCAGGTTTTGGG	0.328			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								17	31					0	0	0.00152264	0	0
TRIM29	23650	broad.mit.edu	37	11	119986080	119986080	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:119986080G>A	uc001pwz.2	-	8	1794	c.1670C>T	c.(1669-1671)CCC>CTC	p.P557L	TRIM29_uc001pwx.2_RNA|TRIM29_uc001pwy.2_Missense_Mutation_p.P90L|TRIM29_uc010rzi.1_Missense_Mutation_p.P296L|TRIM29_uc010rzj.1_Missense_Mutation_p.P290L|TRIM29_uc001pxa.2_RNA	NM_012101	NP_036233	Q14134	TRI29_HUMAN	tripartite motif protein TRIM29	557					transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(109;0.00117)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)		CCAAGTCTGGGGCTGGGCCTT	0.627													17	30					0	0	0.00278032	0	0
POU2F3	25833	broad.mit.edu	37	11	120175796	120175796	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:120175796C>T	uc001pxc.2	+	7	604	c.502C>T	c.(502-504)CAG>TAG	p.Q168*	POU2F3_uc010rzk.1_Nonsense_Mutation_p.Q122*|POU2F3_uc010rzl.1_Nonsense_Mutation_p.Q98*|POU2F3_uc001pxe.1_5'Flank	NM_014352	NP_055167	Q9UKI9	PO2F3_HUMAN	POU transcription factor	168					negative regulation by host of viral transcription	cytoplasm	sequence-specific DNA binding			ovary(1)|skin(1)	2		Breast(109;0.0011)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;6.85e-06)		GGAAGCATCCCAGCATCTCCC	0.567													21	41					0	0	0.00152264	0	0
ARHGEF12	23365	broad.mit.edu	37	11	120345286	120345286	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:120345286A>C	uc001pxl.1	+	32	3058	c.3051A>C	c.(3049-3051)AAA>AAC	p.K1017N	ARHGEF12_uc009zat.2_Missense_Mutation_p.K998N|ARHGEF12_uc010rzn.1_Missense_Mutation_p.K914N|ARHGEF12_uc009zau.1_Missense_Mutation_p.K914N	NM_015313	NP_056128	Q9NZN5	ARHGC_HUMAN	Rho guanine nucleotide exchange factor (GEF) 12	1017					apoptosis|axon guidance|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(2)|breast(2)|skin(2)|ovary(1)	7		Breast(109;0.000813)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_hematologic(192;0.107)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.231)		ATTTAACAAAAAGGAAGATGA	0.323			T	MLL	AML								39	39					0	0	0.00361006	0	0
GRIK4	2900	broad.mit.edu	37	11	120833374	120833374	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:120833374G>A	uc001pxn.2	+	18	2537	c.2250G>A	c.(2248-2250)GGG>GGA	p.G750G	GRIK4_uc009zav.1_Silent_p.G750G|GRIK4_uc009zaw.1_Silent_p.G750G|GRIK4_uc009zax.1_Silent_p.G750G	NM_014619	NP_055434	Q16099	GRIK4_HUMAN	glutamate receptor KA1 precursor	750	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|central_nervous_system(1)	3		Breast(109;0.000868)|Medulloblastoma(222;0.0453)|all_neural(223;0.116)|all_hematologic(192;0.21)		BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.116)	L-Glutamic Acid(DB00142)	AGGGCTATGGGATTGGCATGC	0.537													14	31					0	0	0.00152264	0	0
TECTA	7007	broad.mit.edu	37	11	120998562	120998562	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:120998562C>T	uc010rzo.1	+	8	1876	c.1876C>T	c.(1876-1878)CCG>TCG	p.P626S		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	626	TIL 1.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CTGCGCCACGCCGTGCACAGA	0.652													22	19					0	0	0.00152264	0	0
SORL1	6653	broad.mit.edu	37	11	121391410	121391410	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:121391410G>A	uc001pxx.2	+	9	1336	c.1256G>A	c.(1255-1257)GGA>GAA	p.G419E		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	419	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		CGAGTGGAAGGATTGCAAGGA	0.393													16	17					0	0	0.000566183	0	0
ZNF202	7753	broad.mit.edu	37	11	123597480	123597480	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:123597480G>A	uc001pzd.1	-	9	1572	c.1172C>T	c.(1171-1173)CCC>CTC	p.P391L	ZNF202_uc001pzc.1_Missense_Mutation_p.P167L|ZNF202_uc001pze.1_Missense_Mutation_p.P391L|ZNF202_uc001pzf.1_Missense_Mutation_p.P391L	NM_003455	NP_003446	O95125	ZN202_HUMAN	zinc finger protein 202	391					lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter|viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.03)		CCCTAACAGGGGGTGGACGGG	0.448													28	20					0	0	0.000720815	0	0
OR6T1	219874	broad.mit.edu	37	11	123813676	123813676	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:123813676G>A	uc010sab.1	-	1	870	c.870C>T	c.(868-870)TTC>TTT	p.F290F		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	290	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		TGCGGAGAGTGAAGATGAATG	0.512													52	76					0	0	0.00361006	0	0
VWA5A	4013	broad.mit.edu	37	11	124012423	124012423	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:124012423A>G	uc001pzu.2	+	16	2207	c.1998A>G	c.(1996-1998)ATA>ATG	p.I666M	VWA5A_uc001pzt.2_Missense_Mutation_p.I666M	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	666										upper_aerodigestive_tract(1)|ovary(1)	2						GTGGGTTGATAAGTCACAAGG	0.448													29	30					0	0	0.00375469	0	0
OR8D1	283159	broad.mit.edu	37	11	124180576	124180576	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:124180576G>A	uc010sag.1	-	1	87	c.87C>T	c.(85-87)CTC>CTT	p.L29L		NM_001002917	NP_001002917	Q8WZ84	OR8D1_HUMAN	olfactory receptor, family 8, subfamily D,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		CCAGGAACAGGAGGAAGAGGG	0.478													14	28					0	0	0.00244969	0	0
OR8D2	283160	broad.mit.edu	37	11	124189886	124189886	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:124189886C>T	uc010sah.1	-	1	208	c.208G>A	c.(208-210)GAT>AAT	p.D70N		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	70	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		TAGCAGAGATCAATGAAAGAC	0.413													9	9					0	0	0.000442599	0	0
OR8B3	390271	broad.mit.edu	37	11	124267101	124267101	+	Silent	SNP	G	A	A	rs140121900	byFrequency	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:124267101G>A	uc010saj.1	-	1	147	c.147C>T	c.(145-147)TTC>TTT	p.F49F	OR8B2_uc001qab.3_Intron	NM_001005467	NP_001005467	Q8NGG8	OR8B3_HUMAN	olfactory receptor, family 8, subfamily B,	49	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		AATTTAGACCGAAAAGAATGA	0.418													12	13					0	0	0.00185496	0	0
OR8B8	26493	broad.mit.edu	37	11	124310965	124310965	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:124310965G>A	uc010sal.1	-	1	17	c.17C>T	c.(16-18)TCC>TTC	p.S6F		NM_012378	NP_036510	Q15620	OR8B8_HUMAN	olfactory receptor, family 8, subfamily B,	6	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		CACGAAGGAGGAATTCTCAGC	0.502													15	12					0	0	0.00316338	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128840323	128840324	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:128840323_128840324CC>TT	uc009zcp.2	-	22	4742_4743	c.4742_4743GG>AA	c.(4741-4743)CGG>CAA	p.R1581Q	ARHGAP32_uc009zcq.1_3'UTR|ARHGAP32_uc009zco.2_Missense_Mutation_p.R540Q|ARHGAP32_uc001qez.2_Missense_Mutation_p.R1232Q	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	1581	Interaction with GAB2.				cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						ACTGCACTCTCCGGATGGTAGG	0.55													13	12					0	0	6.4e-05	0	0
BARX2	8538	broad.mit.edu	37	11	129306793	129306793	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:129306793G>A	uc001qfc.3	+	2	385	c.335G>A	c.(334-336)GGG>GAG	p.G112E		NM_003658	NP_003649	Q9UMQ3	BARX2_HUMAN	BarH-like homeobox 2	112											0	all_hematologic(175;0.0749)	Lung NSC(97;0.000383)|all_lung(97;0.000824)|Breast(109;0.000962)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.00929)|Lung(977;0.0245)|LUSC - Lung squamous cell carcinoma(976;0.0253)		GAGGCCCCAGGGGGCGAGGCC	0.687													15	16					0	0	0.00400662	0	0
BARX2	8538	broad.mit.edu	37	11	129306851	129306851	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:129306851G>A	uc001qfc.3	+	2	443	c.393G>A	c.(391-393)AAG>AAA	p.K131K		NM_003658	NP_003649	Q9UMQ3	BARX2_HUMAN	BarH-like homeobox 2	131											0	all_hematologic(175;0.0749)	Lung NSC(97;0.000383)|all_lung(97;0.000824)|Breast(109;0.000962)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.00929)|Lung(977;0.0245)|LUSC - Lung squamous cell carcinoma(976;0.0253)		CCCGACAGAAGAAGCCCCGCC	0.632													7	6					0	0	0.00198382	0	0
NFRKB	4798	broad.mit.edu	37	11	129751382	129751382	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:129751382G>A	uc001qfi.2	-	13	1541	c.1340C>T	c.(1339-1341)CCA>CTA	p.P447L	NFRKB_uc001qfg.2_Missense_Mutation_p.P472L|NFRKB_uc001qfh.2_Missense_Mutation_p.P470L|NFRKB_uc010sbw.1_Missense_Mutation_p.P459L	NM_001143835	NP_001137307	Q6P4R8	NFRKB_HUMAN	nuclear factor related to kappaB binding protein	447					DNA recombination|DNA repair|inflammatory response|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Ino80 complex	DNA binding|protease binding			ovary(3)	3	all_hematologic(175;0.0537)	Breast(109;0.00526)|Lung NSC(97;0.00901)|all_lung(97;0.018)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0167)|Lung(977;0.171)|LUSC - Lung squamous cell carcinoma(976;0.184)		TTCAACAAATGGAGAGAAACT	0.453											OREG0021512	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	22					0	0	0.000958276	0	0
NFRKB	4798	broad.mit.edu	37	11	129756218	129756218	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:129756218G>A	uc001qfi.2	-	5	660	c.459C>T	c.(457-459)TCC>TCT	p.S153S	NFRKB_uc001qfg.2_Silent_p.S166S|NFRKB_uc001qfh.2_Silent_p.S176S|NFRKB_uc010sbw.1_Silent_p.S153S	NM_001143835	NP_001137307	Q6P4R8	NFRKB_HUMAN	nuclear factor related to kappaB binding protein	153					DNA recombination|DNA repair|inflammatory response|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Ino80 complex	DNA binding|protease binding			ovary(3)	3	all_hematologic(175;0.0537)	Breast(109;0.00526)|Lung NSC(97;0.00901)|all_lung(97;0.018)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0167)|Lung(977;0.171)|LUSC - Lung squamous cell carcinoma(976;0.184)		TTACACTCCGGGAAGCAAGAA	0.463													78	88					0	0	0.00361006	0	0
PRDM10	56980	broad.mit.edu	37	11	129814708	129814708	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:129814708G>A	uc001qfm.2	-	6	952	c.720C>T	c.(718-720)CTC>CTT	p.L240L	PRDM10_uc001qfj.2_Silent_p.L154L|PRDM10_uc001qfk.2_Silent_p.L154L|PRDM10_uc001qfl.2_Silent_p.L154L|PRDM10_uc010sbx.1_Silent_p.L154L|PRDM10_uc001qfn.2_Silent_p.L240L|PRDM10_uc009zct.1_Silent_p.L272L	NM_020228	NP_064613	Q9NQV6	PRD10_HUMAN	PR domain containing 10 isoform 1	240	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1	all_hematologic(175;0.0537)	Breast(109;0.000496)|Lung NSC(97;0.000693)|all_lung(97;0.00151)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0174)|Lung(977;0.176)|LUSC - Lung squamous cell carcinoma(976;0.185)		AGCCCCTGACGAGAGGCCCCT	0.562													23	40					0	0	0.00332997	0	0
ADAMTS8	11095	broad.mit.edu	37	11	130275642	130275642	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:130275642G>A	uc001qgg.3	-	9	2839	c.2481C>T	c.(2479-2481)ATC>ATT	p.I827I	ADAMTS8_uc001qgf.2_Silent_p.I308I	NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	827	Spacer.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		GCGGCTGGATGATGTTGGTGG	0.577													50	62					0	0	0.00361006	0	0
ADAMTS8	11095	broad.mit.edu	37	11	130275995	130275995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:130275995G>A	uc001qgg.3	-	9	2486	c.2128C>T	c.(2128-2130)CCA>TCA	p.P710S	ADAMTS8_uc001qgf.2_Missense_Mutation_p.P191S	NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	710	Spacer.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		GCACCAGCTGGGATGGTGACA	0.552													23	28					0	0	0.00278032	0	0
GLB1L2	89944	broad.mit.edu	37	11	134228965	134228965	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr11:134228965C>T	uc001qhp.2	+	7	851	c.663C>T	c.(661-663)GAC>GAT	p.D221D	GLB1L2_uc009zdg.1_RNA	NM_138342	NP_612351	Q8IW92	GLBL2_HUMAN	galactosidase, beta 1-like 2 precursor	221					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|pancreas(1)|skin(1)	3	all_hematologic(175;0.127)	all_cancers(12;2.85e-18)|all_epithelial(12;1.21e-12)|all_lung(97;0.000276)|Lung NSC(97;0.000518)|Breast(109;0.00122)|Medulloblastoma(222;0.0399)|all_neural(223;0.0412)|Esophageal squamous(93;0.0844)		Epithelial(10;1.37e-11)|all cancers(11;2.2e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000885)|Lung(977;0.223)		CACTGGAGGACCGTGGCATTG	0.582													26	43					0	0	0.00127121	0	0
NINJ2	4815	broad.mit.edu	37	12	675180	675180	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:675180C>T	uc001qil.2	-	2	427	c.336G>A	c.(334-336)CTG>CTA	p.L112L	NINJ2_uc010sdr.1_Silent_p.L30L|NINJ2_uc010sds.1_Silent_p.L112L	NM_016533	NP_057617	Q9NZG7	NINJ2_HUMAN	ninjurin 2	66	Helical; (Potential).				nervous system development|neuron cell-cell adhesion|tissue regeneration	integral to plasma membrane				ovary(2)	2	all_cancers(10;0.0101)|all_epithelial(11;0.0174)|Ovarian(42;0.0512)|all_lung(10;0.103)|Lung NSC(10;0.185)		OV - Ovarian serous cystadenocarcinoma(31;3.26e-05)|BRCA - Breast invasive adenocarcinoma(9;0.0508)			TGAGGGTGACCAGGGTGGTGT	0.617													14	51					0	0	0.00316338	0	0
CACNA1C	775	broad.mit.edu	37	12	2224609	2224609	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:2224609A>G	uc009zdu.1	+	2	582	c.269A>G	c.(268-270)AAG>AGG	p.K90R	CACNA1C_uc009zdv.1_Missense_Mutation_p.K90R|CACNA1C_uc001qkb.2_Missense_Mutation_p.K90R|CACNA1C_uc001qkc.2_Missense_Mutation_p.K90R|CACNA1C_uc001qke.2_Missense_Mutation_p.K90R|CACNA1C_uc001qkf.2_Missense_Mutation_p.K90R|CACNA1C_uc001qjz.2_Missense_Mutation_p.K90R|CACNA1C_uc001qkd.2_Missense_Mutation_p.K90R|CACNA1C_uc001qkg.2_Missense_Mutation_p.K90R|CACNA1C_uc009zdw.1_Missense_Mutation_p.K90R|CACNA1C_uc001qkh.2_Missense_Mutation_p.K90R|CACNA1C_uc001qkl.2_Missense_Mutation_p.K90R|CACNA1C_uc001qkn.2_Missense_Mutation_p.K90R|CACNA1C_uc001qko.2_Missense_Mutation_p.K90R|CACNA1C_uc001qkp.2_Missense_Mutation_p.K90R|CACNA1C_uc001qkr.2_Missense_Mutation_p.K90R|CACNA1C_uc001qku.2_Missense_Mutation_p.K90R|CACNA1C_uc001qkq.2_Missense_Mutation_p.K90R|CACNA1C_uc001qks.2_Missense_Mutation_p.K90R|CACNA1C_uc001qkt.2_Missense_Mutation_p.K90R	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	90	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GGGAAACCCAAGAAGCAGGGC	0.647													17	32					0	0	0.000566183	0	0
NDUFA9	4704	broad.mit.edu	37	12	4768259	4768259	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:4768259C>T	uc001qnc.2	+	5	478	c.468C>T	c.(466-468)TCC>TCT	p.S156S	NDUFA9_uc009zei.1_Silent_p.S156S|NDUFA9_uc010ses.1_5'UTR	NM_005002	NP_004993	Q16795	NDUA9_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	156					mitochondrial electron transport, NADH to ubiquinone|sodium ion transport	mitochondrial matrix|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity|protein binding			ovary(1)	1					NADH(DB00157)	CTCAACTGTCCAAGGAAGCTG	0.328													21	24					0	0	0.00229938	0	0
GALNT8	26290	broad.mit.edu	37	12	4855377	4855377	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:4855377G>A	uc001qne.1	+	6	1218	c.1126G>A	c.(1126-1128)GGT>AGT	p.G376S		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	376	Lumenal (Potential).|Catalytic subdomain B.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						GTCTCTGGATGGTGGAATGCT	0.493													23	48					0	0	0.00229938	0	0
KCNA1	3736	broad.mit.edu	37	12	5020775	5020775	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:5020775G>A	uc001qnh.2	+	2	1336	c.231G>A	c.(229-231)AGG>AGA	p.R77R		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	77					synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	ACCCCCTGAGGAACGAGTACT	0.652													21	40					0	0	0.00229938	0	0
KCNA5	3741	broad.mit.edu	37	12	5154166	5154166	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:5154166C>G	uc001qni.2	+	1	1082	c.853C>G	c.(853-855)CCT>GCT	p.P285A		NM_002234	NP_002225	P22460	KCNA5_HUMAN	potassium voltage-gated channel, shaker-related	285						Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(2)|breast(2)	4						GCTCCGCCACCCTCCGGCGCC	0.682													28	46					0	0	0.000878237	0	0
KCNA5	3741	broad.mit.edu	37	12	5154222	5154222	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:5154222C>T	uc001qni.2	+	1	1138	c.909C>T	c.(907-909)GTC>GTT	p.V303V		NM_002234	NP_002225	P22460	KCNA5_HUMAN	potassium voltage-gated channel, shaker-related	303						Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(2)|breast(2)	4						GCAGCGGGGTCATGGCCCCGC	0.706													40	25					0	0	0.00111076	0	0
KCNA5	3741	broad.mit.edu	37	12	5155047	5155048	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:5155047_5155048GG>AA	uc001qni.2	+	1	1963_1964	c.1734_1735GG>AA	c.(1732-1737)AGGGGC>AGAAGC	p.G579S		NM_002234	NP_002225	P22460	KCNA5_HUMAN	potassium voltage-gated channel, shaker-related	579						Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(2)|breast(2)	4						GTGCCCGAAGGGGCAGCTGCCC	0.634													13	21					0	0	6.4e-05	0	0
VWF	7450	broad.mit.edu	37	12	6094283	6094283	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:6094283G>A	uc001qnn.1	-	40	7154	c.6904C>T	c.(6904-6906)CCC>TCC	p.P2302S	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2302	VWFC 1.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CCACACGTGGGAGCTAGAGGA	0.542													24	59					0	0	0.00278032	0	0
LTBR	4055	broad.mit.edu	37	12	6499962	6499962	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:6499962C>T	uc001qny.1	+	10	1335	c.1167C>T	c.(1165-1167)CCC>CCT	p.P389P	LTBR_uc010sfc.1_Silent_p.P370P|LTBR_uc001qnz.1_Silent_p.P384P	NM_002342	NP_002333	P36941	TNR3_HUMAN	lymphotoxin beta receptor precursor	389	Cytoplasmic (Potential).				apoptosis|cellular response to mechanical stimulus|interspecies interaction between organisms|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane	protein binding|receptor activity			lung(2)	2						ACCCCATTCCCGAAGAGGGGG	0.617													28	46					0	0	0.000878237	0	0
TAPBPL	55080	broad.mit.edu	37	12	6562689	6562689	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:6562689C>T	uc001qog.3	+	3	610	c.372C>T	c.(370-372)ATC>ATT	p.I124I	LOC678655_uc001qob.2_5'Flank|LOC678655_uc001qoc.2_5'Flank|LOC678655_uc009zel.1_5'Flank|LOC678655_uc009zem.1_5'Flank|LOC678655_uc001qof.2_5'Flank|TAPBPL_uc001qoh.3_5'UTR|TAPBPL_uc001qoi.1_RNA	NM_018009	NP_060479	Q9BX59	TPSNR_HUMAN	TAP binding protein-like precursor	124	Lumenal (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I	endoplasmic reticulum membrane|integral to membrane|microsome|plasma membrane					0						CCTGTGAGATCTCCCGCTACT	0.577													31	14					0	0	0.00209593	0	0
CHD4	1108	broad.mit.edu	37	12	6710877	6710877	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:6710877T>A	uc001qpo.2	-	5	658	c.494A>T	c.(493-495)CAC>CTC	p.H165L	CHD4_uc001qpn.2_Missense_Mutation_p.H158L|CHD4_uc001qpp.2_Missense_Mutation_p.H162L	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	165					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						TGAGAACACGTGGTCAATGTC	0.512													79	213					0	0	0.00361006	0	0
ACSM4	341392	broad.mit.edu	37	12	7459334	7459334	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:7459334G>A	uc001qsx.1	+	2	407	c.407G>A	c.(406-408)CGA>CAA	p.R136Q		NM_001080454	NP_001073923	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	136					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding				0						GCTTGCATACGAACAGGTCAG	0.463													5	10					0	0	0.00116845	0	0
CD163L1	283316	broad.mit.edu	37	12	7531888	7531888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:7531888G>A	uc001qsy.2	-	9	2083	c.2057C>T	c.(2056-2058)TCG>TTG	p.S686L	CD163L1_uc010sge.1_Missense_Mutation_p.S696L	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	686	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						CTCCATATCCGATGCATCTGA	0.463													12	10					0	0	0.00136819	0	0
CD163L1	283316	broad.mit.edu	37	12	7559178	7559179	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:7559178_7559179GT>AA	uc001qsy.2	-	5	1062_1063	c.1036_1037AC>TT	c.(1036-1038)ACC>TTC	p.T346F	CD163L1_uc010sge.1_Missense_Mutation_p.T356F	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	346	SRCR 3.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						AAAATTGACGGTTCCGGAATGT	0.426													9	40					0	0	6.4e-05	0	0
CD163	9332	broad.mit.edu	37	12	7653826	7653826	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:7653826C>T	uc001qsz.3	-	3	494	c.366G>A	c.(364-366)GGG>GGA	p.G122G	CD163_uc001qta.3_Silent_p.G122G|CD163_uc009zfw.2_Silent_p.G122G	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	122	SRCR 1.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						CTGACTCATTCCCACGACAAG	0.483													76	49					0	0	0.00361006	0	0
GDF3	9573	broad.mit.edu	37	12	7842921	7842921	+	Silent	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:7842921A>G	uc001qte.2	-	2	684	c.648T>C	c.(646-648)TTT>TTC	p.F216F		NM_020634	NP_065685	Q9NR23	GDF3_HUMAN	growth differentiation factor 3 precursor	216					eye development|growth|skeletal system development	extracellular space	cytokine activity|growth factor activity			skin(3)|ovary(1)|lung(1)|central_nervous_system(1)	6						CTTCAGGCTGAAAATTCACCC	0.493													16	47					0	0	0.00400662	0	0
SLC2A14	144195	broad.mit.edu	37	12	7980222	7980222	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:7980222C>T	uc001qtk.2	-	12	1595	c.802G>A	c.(802-804)GAT>AAT	p.D268N	SLC2A14_uc001qtl.2_Missense_Mutation_p.D245N|SLC2A14_uc001qtm.2_Missense_Mutation_p.D245N|SLC2A14_uc010sgg.1_Missense_Mutation_p.D159N|SLC2A14_uc001qtn.2_Missense_Mutation_p.D268N|SLC2A14_uc001qto.2_Intron|SLC2A14_uc010sgh.1_Missense_Mutation_p.D283N	NM_153449	NP_703150	Q8TDB8	GTR14_HUMAN	glucose transporter 14	268	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane	glucose transmembrane transporter activity			ovary(1)	1				Kidney(36;0.0883)		GCACTCTCATCTTTCATCTCC	0.493													14	41					0	0	0.00229938	0	0
SLC2A3	6515	broad.mit.edu	37	12	8082411	8082411	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:8082411C>T	uc001qtr.2	-	6	992	c.730G>A	c.(730-732)GAT>AAT	p.D244N	SLC2A3_uc001qts.2_3'UTR	NM_006931	NP_008862	P11169	GTR3_HUMAN	solute carrier family 2 (facilitated glucose	244	Cytoplasmic (Potential).				carbohydrate metabolic process|water-soluble vitamin metabolic process	integral to membrane|plasma membrane	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			ovary(3)|pancreas(1)	4				Kidney(36;0.0866)		GCACTCTCATCTTTCATCTCC	0.483													6	88					0	0	0.000978159	0	0
FAM90A1	55138	broad.mit.edu	37	12	8374907	8374907	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:8374907C>T	uc001qui.2	-	7	1465	c.906G>A	c.(904-906)CTG>CTA	p.L302L	FAM90A1_uc001quh.2_Silent_p.L302L	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	302							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		TGGGGAAGTTCAGGCAAGCCT	0.642													9	69					0	0	0.000673444	0	0
CLEC4D	338339	broad.mit.edu	37	12	8671697	8671697	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:8671697G>A	uc001qun.2	+	4	518	c.325G>A	c.(325-327)GAA>AAA	p.E109K		NM_080387	NP_525126	Q8WXI8	CLC4D_HUMAN	C-type lectin domain family 4, member D	109	C-type lectin.|Extracellular (Potential).				innate immune response	integral to membrane	sugar binding				0	Lung SC(5;0.184)					GGCTGAGAGTGAAAGGAACTG	0.512													17	18					0	0	0.000566183	0	0
CLEC4E	26253	broad.mit.edu	37	12	8687247	8687247	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:8687247C>T	uc001quo.1	-	6	812	c.647G>A	c.(646-648)GGA>GAA	p.G216E		NM_014358	NP_055173	Q9ULY5	CLC4E_HUMAN	C-type lectin domain family 4, member E	216	Extracellular (Potential).					integral to membrane	sugar binding			central_nervous_system(1)	1	Lung SC(5;0.184)					AAGAGATTTTCCTTTGTTCAA	0.408													16	35					0	0	0.00400662	0	0
A2ML1	144568	broad.mit.edu	37	12	8976394	8976394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:8976394G>A	uc001quz.3	+	3	423	c.325G>A	c.(325-327)GAG>AAG	p.E109K		NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	Error:Variant_position_missing_in_B3KVV6_after_alignment						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						CAGCTTTGAGGAGAAGAAAAA	0.502													30	69					0	0	0.00209593	0	0
PZP	5858	broad.mit.edu	37	12	9333697	9333697	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:9333697G>A	uc001qvl.2	-	15	1750	c.1721C>T	c.(1720-1722)CCC>CTC	p.P574L	PZP_uc009zgl.2_Missense_Mutation_p.P443L	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						TGAGGCTGGGGGACTTTGTGC	0.542													31	27					0	0	0.00428921	0	0
PZP	5858	broad.mit.edu	37	12	9345244	9345244	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:9345244G>A	uc001qvl.2	-	12	1375	c.1346C>T	c.(1345-1347)TCC>TTC	p.S449F	PZP_uc009zgl.2_Missense_Mutation_p.S318F	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						TCCACTTAAGGAGAAAACACG	0.498													29	59					0	0	0.0024448	0	0
KLRF1	51348	broad.mit.edu	37	12	9997066	9997066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:9997066G>A	uc010sgw.1	+	7	701	c.637G>A	c.(637-639)GAA>AAA	p.E213K	KLRF1_uc009zgw.2_Missense_Mutation_p.E164K|KLRF1_uc009zgx.2_RNA|KLRF1_uc001qwm.2_RNA|KLRF1_uc009zgy.2_RNA|KLRF1_uc009zgz.2_3'UTR|KLRF1_uc009zha.2_RNA	NM_016523	NP_057607	Q9NZS2	KLRF1_HUMAN	killer cell lectin-like receptor subfamily F,	214	C-type lectin.|Extracellular (Potential).				cell surface receptor linked signaling pathway	integral to plasma membrane	MHC class I receptor activity|sugar binding			large_intestine(1)	1						TGCCATTAAGGAAAGCAAAAT	0.353													11	2					0	0	0.00185496	0	0
TAS2R9	50835	broad.mit.edu	37	12	10962038	10962038	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:10962038G>A	uc001qyx.2	-	1	730	c.637C>T	c.(637-639)CGA>TGA	p.R213*	TAS2R8_uc010shh.1_5'Flank	NM_023917	NP_076406	Q9NYW1	TA2R9_HUMAN	taste receptor, type 2, member 9	213	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	taste receptor activity			skin(1)	1						GCATGCAGTCGAATCTGCTTG	0.488													12	2					0	0	0.000978159	0	0
GPRC5A	9052	broad.mit.edu	37	12	13061549	13061549	+	Silent	SNP	C	T	T	rs142201347		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:13061549C>T	uc001rba.2	+	2	1016	c.366C>T	c.(364-366)CTC>CTT	p.L122L	GPRC5A_uc001raz.2_Silent_p.L122L	NM_003979	NP_003970	Q8NFJ5	RAI3_HUMAN	G protein-coupled receptor, family C, group 5,	122	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|Golgi apparatus|integral to plasma membrane	G-protein coupled receptor activity				0		Prostate(47;0.141)		BRCA - Breast invasive adenocarcinoma(232;0.0708)	Tretinoin(DB00755)	TGACCAAGCTCGTCCGGGGGA	0.557													38	135					0	0	0.00128727	0	0
GRIN2B	2904	broad.mit.edu	37	12	13717390	13717390	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:13717390C>T	uc001rbt.2	-	13	2961	c.2782G>A	c.(2782-2784)GAG>AAG	p.E928K		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	928	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	ACGGATGACTCCCGTCGGATG	0.572													102	58					0	0	0.00361006	0	0
GRIN2B	2904	broad.mit.edu	37	12	13828756	13828756	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:13828756A>T	uc001rbt.2	-	4	1227	c.1048T>A	c.(1048-1050)TCC>ACC	p.S350T		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	350	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TCACTGAAGGACAAATTCCTC	0.398													16	24					0	0	0.00074312	0	0
GRIN2B	2904	broad.mit.edu	37	12	14019004	14019004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:14019004C>T	uc001rbt.2	-	2	318	c.139G>A	c.(139-141)GAG>AAG	p.E47K		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	47	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	ATGGCCACCTCGTCGGAAGTG	0.587													9	53					0	0	0.000274275	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891712	18891712	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:18891712G>A	uc001rdy.2	+	1	668	c.510G>A	c.(508-510)TGG>TGA	p.W170*	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	170					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				ACGGACTTTGGAAATCTAAAT	0.388													24	12					0	0	0.00332997	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20858930	20858930	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:20858930C>T	uc001rej.3	+	5	674	c.319C>T	c.(319-321)CAC>TAC	p.H107Y	SLCO1C1_uc010sii.1_Missense_Mutation_p.H107Y|SLCO1C1_uc010sij.1_Missense_Mutation_p.H107Y|SLCO1C1_uc009zip.2_Intron|SLCO1C1_uc001rei.2_Missense_Mutation_p.H107Y|SLCO1C1_uc010sik.1_5'UTR	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	107	Cytoplasmic (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					AGCCAAACTTCACAGGCCAAA	0.373													57	106					0	0	0.00361006	0	0
PTHLH	5744	broad.mit.edu	37	12	28116390	28116390	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:28116390T>C	uc001rik.2	-	3	718	c.415A>G	c.(415-417)AAA>GAA	p.K139E	PTHLH_uc001ril.2_Missense_Mutation_p.K139E|PTHLH_uc001rim.2_Missense_Mutation_p.K139E|PTHLH_uc001rin.2_Missense_Mutation_p.K139E	NM_198966	NP_945317	P12272	PTHR_HUMAN	parathyroid hormone-like hormone isoform 1	139					activation of adenylate cyclase activity by G-protein signaling pathway|cAMP metabolic process|cell-cell signaling|epidermis development|female pregnancy|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation	cytoplasm|extracellular space|nucleus	hormone activity|peptide hormone receptor binding			breast(1)	1	Lung SC(9;0.184)					CGCCGTTTTTTCTTTTCCTGC	0.542													14	40					0	0	0.00400662	0	0
IPO8	10526	broad.mit.edu	37	12	30787023	30787023	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:30787023G>A	uc001rjd.2	-	23	3063	c.2893C>T	c.(2893-2895)CTG>TTG	p.L965L	IPO8_uc001rje.1_Silent_p.L454L|IPO8_uc010sjt.1_Silent_p.L760L	NM_006390	NP_006381	O15397	IPO8_HUMAN	importin 8	965					intracellular protein transport|signal transduction	cytoplasm|nucleus	protein transporter activity|Ran GTPase binding			skin(2)|central_nervous_system(1)	3	all_lung(12;6.66e-10)|Lung NSC(12;4.84e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					ATACTTATCAGAGCTTGTGTA	0.378													6	23					0	0	0.00198382	0	0
IPO8	10526	broad.mit.edu	37	12	30833521	30833521	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:30833521G>A	uc001rjd.2	-	5	704	c.534C>T	c.(532-534)TTC>TTT	p.F178F		NM_006390	NP_006381	O15397	IPO8_HUMAN	importin 8	178					intracellular protein transport|signal transduction	cytoplasm|nucleus	protein transporter activity|Ran GTPase binding			skin(2)|central_nervous_system(1)	3	all_lung(12;6.66e-10)|Lung NSC(12;4.84e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					TACGAGGCAGGAATATCTGCA	0.353													35	88					0	0	0.00148497	0	0
CAPRIN2	65981	broad.mit.edu	37	12	30881844	30881844	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:30881844G>A	uc001rji.1	-	8	2271	c.1520C>T	c.(1519-1521)CCA>CTA	p.P507L	CAPRIN2_uc001rjf.1_Missense_Mutation_p.P304L|CAPRIN2_uc001rjg.1_Missense_Mutation_p.P174L|CAPRIN2_uc001rjh.1_Missense_Mutation_p.P507L|CAPRIN2_uc001rjj.1_Missense_Mutation_p.P174L|CAPRIN2_uc001rjk.3_Missense_Mutation_p.P507L|CAPRIN2_uc001rjl.3_Missense_Mutation_p.P507L|CAPRIN2_uc001rjm.1_Missense_Mutation_p.P174L|CAPRIN2_uc001rjn.1_Missense_Mutation_p.P174L	NM_001002259	NP_001002259	Q6IMN6	CAPR2_HUMAN	C1q domain containing 1 isoform 1	507					negative regulation of cell growth|negative regulation of translation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of transcription from RNA polymerase II promoter	mitochondrion|receptor complex	receptor binding|RNA binding			ovary(1)|central_nervous_system(1)	2	all_lung(12;1.13e-09)|Lung NSC(12;7.98e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					TTGCTTCTTTGGATCTTGTTC	0.453													47	30					0	0	0.0025221	0	0
C12orf35	55196	broad.mit.edu	37	12	32134418	32134418	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:32134418C>T	uc001rks.2	+	4	943	c.529C>T	c.(529-531)CCT>TCT	p.P177S		NM_018169	NP_060639	Q9HCM1	CL035_HUMAN	hypothetical protein LOC55196	177										ovary(1)|skin(1)	2	all_cancers(9;3.36e-11)|all_epithelial(9;2.56e-11)|all_lung(12;5.67e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0114)			TACACGACTTCCTGTAGCTTA	0.423													21	53					0	0	0.00332997	0	0
SYT10	341359	broad.mit.edu	37	12	33535294	33535294	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:33535294C>T	uc001rll.1	-	5	1657	c.1360G>A	c.(1360-1362)GAT>AAT	p.D454N	SYT10_uc009zju.1_Missense_Mutation_p.D264N	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	454	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					CTATCGTAATCCATGACCGCA	0.458													20	18					0	0	0.00188189	0	0
PDZRN4	29951	broad.mit.edu	37	12	41966780	41966780	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:41966780G>A	uc010skn.1	+	10	1670	c.1602G>A	c.(1600-1602)AAG>AAA	p.K534K	PDZRN4_uc001rmq.3_Silent_p.K475K|PDZRN4_uc009zjz.2_Silent_p.K473K|PDZRN4_uc001rmr.2_Silent_p.K360K	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	733							ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				AGTCTGACAAGGACAGTTCTA	0.478													24	61					0	0	0.00278032	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43826237	43826237	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:43826237C>T	uc010skx.1	-	21	2966	c.2966G>A	c.(2965-2967)CGA>CAA	p.R989Q	ADAMTS20_uc001rno.1_Missense_Mutation_p.R143Q|ADAMTS20_uc001rnp.1_Missense_Mutation_p.R143Q	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	989	TSP type-1 4.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		ATAAGATTCTCGAGACCTTTC	0.368													14	56					0	0	0.00316338	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43826539	43826539	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:43826539C>T	uc010skx.1	-	20	2796	c.2796G>A	c.(2794-2796)ATG>ATA	p.M932I	ADAMTS20_uc001rno.1_Missense_Mutation_p.M86I|ADAMTS20_uc001rnp.1_Missense_Mutation_p.M86I	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	932	TSP type-1 3.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TGGAATACTTCATGCAATGGA	0.408													35	80					0	0	0.00111076	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43846459	43846459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:43846459C>T	uc010skx.1	-	13	1800	c.1800G>A	c.(1798-1800)ATG>ATA	p.M600I		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	600	TSP type-1 1.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		ATCGAAATTTCATCCTGCGGC	0.388													11	5					0	0	0.000978159	0	0
LALBA	3906	broad.mit.edu	37	12	48963728	48963728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:48963728C>T	uc001rrt.2	-	1	102	c.76G>A	c.(76-78)GAG>AAG	p.E26K		NM_002289	NP_002280	P00709	LALBA_HUMAN	lactalbumin, alpha- precursor	26					cell-cell signaling|defense response to bacterium|induction of apoptosis|lactose biosynthetic process|signal transduction	extracellular space	calcium ion binding|lactose synthase activity				0						TGGGACAGCTCACATTTTGTG	0.498													36	18					0	0	0.00375469	0	0
CCDC65	85478	broad.mit.edu	37	12	49315121	49315121	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:49315121G>A	uc001rso.2	+	8	1577	c.1350G>A	c.(1348-1350)CTG>CTA	p.L450L		NM_033124	NP_149115	Q8IXS2	CCD65_HUMAN	coiled-coil domain containing 65	450										ovary(1)|skin(1)	2						ACGAAGTGCTGAGCCAGCTCA	0.493													24	42					0	0	0.00332997	0	0
WNT10B	7480	broad.mit.edu	37	12	49360220	49360220	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:49360220C>T	uc001rss.2	-	5	1174	c.828G>A	c.(826-828)AGG>AGA	p.R276R	WNT10B_uc001rst.2_3'UTR	NM_003394	NP_003385	O00744	WN10B_HUMAN	wingless-type MMTV integration site family,	276					axis specification|bone trabecula formation|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|chondrocyte differentiation|female gonad development|hemopoietic stem cell proliferation|midbrain-hindbrain boundary development|myoblast cell differentiation involved in skeletal muscle regeneration|negative regulation of epithelial cell proliferation|negative regulation of fat cell differentiation|neuron differentiation|positive regulation of anagen|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cell proliferation|positive regulation of epithelial cell differentiation|positive regulation of osteoblast differentiation|protein stabilization|regulation of skeletal muscle tissue development|skeletal muscle fiber development|smoothened signaling pathway|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			skin(4)|lung(3)	7						CCAGCCGCTCCCTCAACGCCG	0.632													37	25					0	0	0.00128727	0	0
PRKAG1	5571	broad.mit.edu	37	12	49397341	49397341	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:49397341G>A	uc001rsy.2	-	10	810	c.741C>T	c.(739-741)ATC>ATT	p.I247I	uc001rsw.2_Intron|PRKAG1_uc010smd.1_Silent_p.I215I|PRKAG1_uc001rsx.2_Silent_p.I163I|PRKAG1_uc001rsz.2_Silent_p.I256I|PRKAG1_uc009zlb.2_Silent_p.I59I	NM_002733	NP_002724	P54619	AAKG1_HUMAN	AMP-activated protein kinase, noncatalytic	247	CBS 3.				cell cycle arrest|fatty acid biosynthetic process|insulin receptor signaling pathway|positive regulation of protein kinase activity|regulation of fatty acid oxidation|regulation of glycolysis|spermatogenesis	cytosol	cAMP-dependent protein kinase activity|cAMP-dependent protein kinase regulator activity|protein kinase binding			kidney(1)	1						AATCACTCACGATAACATCAA	0.532													7	32					0	0	0.00307968	0	0
PRKAG1	5571	broad.mit.edu	37	12	49397357	49397357	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:49397357G>A	uc001rsy.2	-	10	794	c.725C>T	c.(724-726)TCC>TTC	p.S242F	uc001rsw.2_Intron|PRKAG1_uc010smd.1_Missense_Mutation_p.S210F|PRKAG1_uc001rsx.2_Missense_Mutation_p.S158F|PRKAG1_uc001rsz.2_Missense_Mutation_p.S251F|PRKAG1_uc009zlb.2_Missense_Mutation_p.S54F	NM_002733	NP_002724	P54619	AAKG1_HUMAN	AMP-activated protein kinase, noncatalytic	242	CBS 3.				cell cycle arrest|fatty acid biosynthetic process|insulin receptor signaling pathway|positive regulation of protein kinase activity|regulation of fatty acid oxidation|regulation of glycolysis|spermatogenesis	cytosol	cAMP-dependent protein kinase activity|cAMP-dependent protein kinase regulator activity|protein kinase binding			kidney(1)	1						ATCAAACTTGGAGTAGATGTC	0.542													11	33					0	0	0.000978159	0	0
MLL2	8085	broad.mit.edu	37	12	49432453	49432453	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:49432453G>A	uc001rta.3	-	34	8686	c.8686C>T	c.(8686-8688)CCT>TCT	p.P2896S		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	2896	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CCCTGACCAGGAAACGGAGTG	0.622			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			10	16					0	0	0.000442599	0	0
FAIM2	23017	broad.mit.edu	37	12	50291358	50291358	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:50291358G>A	uc001rvj.1	-	4	469	c.324C>T	c.(322-324)ACC>ACT	p.T108T	FAIM2_uc001rvi.1_Silent_p.T62T|FAIM2_uc001rvk.1_RNA	NM_012306	NP_036438	Q9BWQ8	FAIM2_HUMAN	Fas apoptotic inhibitory molecule 2	108	Helical; (Potential).				anti-apoptosis|apoptosis	cell junction|integral to membrane|postsynaptic membrane				large_intestine(1)|ovary(1)|skin(1)	3						TCAGCAGGATGGTGTAGACCT	0.592													8	28					0	0	0.000442599	0	0
GPD1	2819	broad.mit.edu	37	12	50500608	50500608	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:50500608G>A	uc001rvz.2	+	5	553	c.520G>A	c.(520-522)GGA>AGA	p.G174R	GPD1_uc001rwa.2_Missense_Mutation_p.G151R	NM_005276	NP_005267	P21695	GPDA_HUMAN	glycerol-3-phosphate dehydrogenase 1 (soluble)	174					glycerol-3-phosphate catabolic process|triglyceride biosynthetic process	cytosol|glycerol-3-phosphate dehydrogenase complex	glycerol-3-phosphate dehydrogenase|protein homodimerization activity				0					NADH(DB00157)	CCCGGCCCAGGGACAACTCCT	0.438													16	38					0	0	0.00121646	0	0
CELA1	1990	broad.mit.edu	37	12	51733658	51733658	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:51733658G>A	uc001ryi.1	-	6	636	c.595C>T	c.(595-597)CGC>TGC	p.R199C		NM_001971	NP_001962	Q9UNI1	CELA1_HUMAN	chymotrypsin-like elastase family, member 1	199	Peptidase S1.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			breast(1)	1						CATCCAGAGCGAACTCCATCT	0.602													9	33					0	0	0.000442599	0	0
SLC4A8	9498	broad.mit.edu	37	12	51863538	51863539	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:51863538_51863539GG>AA	uc001rys.1	+	12	1668_1669	c.1490_1491GG>AA	c.(1489-1491)GGG>GAA	p.G497E	SLC4A8_uc010sni.1_Missense_Mutation_p.G444E|SLC4A8_uc001rym.2_Missense_Mutation_p.G444E|SLC4A8_uc001ryn.2_Missense_Mutation_p.G444E|SLC4A8_uc001ryo.2_Missense_Mutation_p.G444E|SLC4A8_uc010snj.1_Missense_Mutation_p.G524E|SLC4A8_uc001ryq.3_Missense_Mutation_p.G497E|SLC4A8_uc001ryr.2_Missense_Mutation_p.G497E|SLC4A8_uc010snk.1_Missense_Mutation_p.G444E	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	497	Helical; (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		ATCACCTTTGGGGGACTGCTTG	0.505													29	75					0	0	6.4e-05	0	0
KRT82	3888	broad.mit.edu	37	12	52794341	52794341	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:52794341C>G	uc001sai.1	-	4	862	c.747G>C	c.(745-747)GAG>GAC	p.E249D		NM_033033	NP_149022	Q9NSB4	KRT82_HUMAN	keratin 82	249	Coil 1B.|Rod.					keratin filament	protein binding|structural constituent of epidermis			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.193)		GGAAGTCGATCTCCTGCACGA	0.592													18	60					0	0	0.00188189	0	0
KRT6A	3853	broad.mit.edu	37	12	52881884	52881884	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:52881884C>T	uc001sam.2	-	8	1637	c.1428G>A	c.(1426-1428)CTG>CTA	p.L476L		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	476	Tail.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		CTTCGCCATTCAGCCTGTGGA	0.582													17	35					0	0	0.00188189	0	0
KRT5	3852	broad.mit.edu	37	12	52913943	52913943	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:52913943G>A	uc001san.2	-	1	301	c.138C>T	c.(136-138)TTC>TTT	p.F46F	KRT5_uc009zmh.2_Silent_p.F46F	NM_000424	NP_000415	P13647	K2C5_HUMAN	keratin 5	46	Head.|Gly-rich.				epidermis development|hemidesmosome assembly	cytosol|keratin filament	protein binding|structural constituent of cytoskeleton				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		TGACCCTGCCGAAGCCACCAC	0.652													16	26					0	0	0.00400662	0	0
KRT71	112802	broad.mit.edu	37	12	52943863	52943863	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:52943863C>T	uc001sao.2	-	2	676	c.606G>A	c.(604-606)CTG>CTA	p.L202L		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	202	Coil 1B.|Rod.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		GCTCCGAGTCCAGCCTCACCC	0.587													61	48					0	0	0.00361006	0	0
KRT2	3849	broad.mit.edu	37	12	53042018	53042018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:53042018G>A	uc001sat.2	-	5	1094	c.1061C>T	c.(1060-1062)GCC>GTC	p.A354V		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	354	Coil 2.|Rod.				keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		CTCATACTGGGCCTTGACCTC	0.552													42	99					0	0	0.00222228	0	0
AAAS	8086	broad.mit.edu	37	12	53708084	53708084	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:53708084G>A	uc001scr.3	-	7	850	c.687C>T	c.(685-687)ACC>ACT	p.T229T	AAAS_uc001scs.3_Silent_p.T196T	NM_015665	NP_056480	Q9NRG9	AAAS_HUMAN	achalasia, adrenocortical insufficiency,	229	WD 2.				carbohydrate metabolic process|glucose transport|nucleocytoplasmic transport|regulation of glucose transport|regulation of nucleocytoplasmic transport|transmembrane transport|viral reproduction	nuclear pore				ovary(1)	1						GGACTTACCGGGTAGACAAGG	0.562													44	108					0	0	0.00361006	0	0
ITGA5	3678	broad.mit.edu	37	12	54799118	54799118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:54799118G>A	uc001sga.2	-	12	1125	c.1057C>T	c.(1057-1059)CGG>TGG	p.R353W	ITGA5_uc010sow.1_RNA|ITGA5_uc009znp.1_RNA	NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	353	Extracellular (Potential).|FG-GAP 5.				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						TCAGGGGTCCGATCCATGAGC	0.657													6	17					0	0	0.00198382	0	0
GTSF1	121355	broad.mit.edu	37	12	54856450	54856450	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:54856450G>A	uc001sgb.2	-	5	390	c.304C>T	c.(304-306)CCT>TCT	p.P102S		NM_144594	NP_653195	Q8WW33	GTSF1_HUMAN	gametocyte specific factor 1	102							metal ion binding				0		Myeloproliferative disorder(1001;0.00452)				TCATCGCAAGGAGGGCACTGC	0.438													42	83					0	0	0.00361006	0	0
PDE1B	5153	broad.mit.edu	37	12	54968987	54968987	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:54968987G>A	uc001sgd.1	+	11	1336	c.1170G>A	c.(1168-1170)GAG>GAA	p.E390E	PDE1B_uc010soz.1_Silent_p.E253E|PDE1B_uc010spa.1_Silent_p.E349E|PDE1B_uc001sgf.2_Silent_p.E253E|PDE1B_uc001sge.2_Silent_p.E370E|PDE1B_uc009znq.2_Silent_p.E186E	NM_000924	NP_000915	Q01064	PDE1B_HUMAN	phosphodiesterase 1B isoform 1	390	Catalytic (By similarity).				activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						CCCTCATGGAGGAATTCTTCC	0.572													27	68					0	0	0.001512	0	0
OR6C3	254786	broad.mit.edu	37	12	55725853	55725853	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:55725853C>T	uc010spj.1	+	1	369	c.369C>T	c.(367-369)ATC>ATT	p.I123I		NM_054104	NP_473445	Q9NZP0	OR6C3_HUMAN	olfactory receptor, family 6, subfamily C,	123	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ATGTTGCCATCTGCAAGCCCC	0.458													69	39					0	0	0.00361006	0	0
OR6C75	390323	broad.mit.edu	37	12	55759806	55759806	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:55759806G>A	uc010spk.1	+	1	912	c.912G>A	c.(910-912)CAG>CAA	p.Q304Q		NM_001005497	NP_001005497	A6NL08	O6C75_HUMAN	olfactory receptor, family 6, subfamily C,	304	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3						GCATGGTCCAGAAGATGATTT	0.388													8	36					0	0	0.000442599	0	0
OR6C76	390326	broad.mit.edu	37	12	55820117	55820117	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:55820117C>T	uc010spm.1	+	1	80	c.80C>T	c.(79-81)TCG>TTG	p.S27L		NM_001005183	NP_001005183	A6NM76	O6C76_HUMAN	olfactory receptor, family 6, subfamily C,	27	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTGATTTTCTCGTTCCTATTT	0.418													10	29					0	0	0.000442599	0	0
OR6C76	390326	broad.mit.edu	37	12	55820232	55820232	+	Silent	SNP	C	T	T	rs139871766	byFrequency	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:55820232C>T	uc010spm.1	+	1	195	c.195C>T	c.(193-195)TCC>TCT	p.S65S		NM_001005183	NP_001005183	A6NM76	O6C76_HUMAN	olfactory receptor, family 6, subfamily C,	65	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGAATTTCTCCTTGGAAATTT	0.408													39	19					0	0	0.000953801	0	0
OR6C2	341416	broad.mit.edu	37	12	55846191	55846191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:55846191C>T	uc001sgz.1	+	1	194	c.194C>T	c.(193-195)TCC>TTC	p.S65F		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	65	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						AGAAATTTTTCCTTCTTAGAA	0.398													29	20					0	0	0.00106085	0	0
MMP19	4327	broad.mit.edu	37	12	56233442	56233443	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:56233442_56233443GG>AA	uc001sib.2	-	5	724_725	c.603_604CC>TT	c.(601-606)TACCGT>TATTGT	p.R202C	MMP19_uc001sia.2_5'UTR|MMP19_uc001sid.2_RNA|MMP19_uc010spw.1_Intron	NM_002429	NP_002420	Q99542	MMP19_HUMAN	matrix metalloproteinase 19 isoform rasi-1	202					angiogenesis|cell differentiation|collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)	1						TTCACCCCACGGTAGGTCCCCT	0.609													4	16					0	0	6.4e-05	0	0
APOF	319	broad.mit.edu	37	12	56755102	56755102	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:56755102G>A	uc001sle.1	-	2	942	c.888C>T	c.(886-888)TTC>TTT	p.F296F		NM_001638	NP_001629	Q13790	APOF_HUMAN	apolipoprotein F precursor	296					cholesterol metabolic process	high-density lipoprotein particle|low-density lipoprotein particle	cholesterol binding|lipid transporter activity|receptor binding				0						CTTCTGATATGAAAGAAGCCA	0.473													16	51					0	0	0.00074312	0	0
MIP	4284	broad.mit.edu	37	12	56847452	56847452	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:56847452C>T	uc001slh.2	-	2	480	c.448G>A	c.(448-450)GAC>AAC	p.D150N		NM_012064	NP_036196	P30301	MIP_HUMAN	major intrinsic protein of lens fiber	150	Cytoplasmic (By similarity).				response to stimulus|visual perception	gap junction|integral to plasma membrane	structural constituent of eye lens			skin(1)	1						CGCCTCTCGTCGTATGTGGCA	0.602													11	28					0	0	0.00136819	0	0
MIP	4284	broad.mit.edu	37	12	56848292	56848292	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:56848292G>A	uc001slh.2	-	1	138	c.106C>T	c.(106-108)CCT>TCT	p.P36S		NM_012064	NP_036196	P30301	MIP_HUMAN	major intrinsic protein of lens fiber	36	Extracellular (By similarity).				response to stimulus|visual perception	gap junction|integral to plasma membrane	structural constituent of eye lens			skin(1)	1						AGGGGTCCAGGAGCCCAGCGC	0.582													22	50					0	0	0.00332997	0	0
LRP1	4035	broad.mit.edu	37	12	57594821	57594821	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:57594821C>T	uc001snd.2	+	65	10696	c.10230C>T	c.(10228-10230)ATC>ATT	p.I3410I		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	3410	Extracellular (Potential).|LDL-receptor class A 22.				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CCACAGACATCCACGTCTGCT	0.612													26	59					0	0	0.00106085	0	0
LRIG3	121227	broad.mit.edu	37	12	59271441	59271441	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:59271441G>A	uc001sqr.2	-	15	2523	c.2277C>T	c.(2275-2277)GTC>GTT	p.V759V	LRIG3_uc009zqh.2_Silent_p.V699V|LRIG3_uc010ssh.1_RNA	NM_153377	NP_700356	Q6UXM1	LRIG3_HUMAN	leucine-rich repeats and immunoglobulin-like	759	Ig-like C2-type 3.					integral to membrane				skin(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;1.17e-18)			CAGCATCACTGACATCTGAGT	0.498													81	46					0	0	0.00361006	0	0
PPM1H	57460	broad.mit.edu	37	12	63225927	63225927	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:63225927G>A	uc001srk.3	-	2	527	c.378C>T	c.(376-378)CCC>CCT	p.P126P		NM_020700	NP_065751	Q9ULR3	PPM1H_HUMAN	protein phosphatase 1H (PP2C domain containing)	126							phosphoprotein phosphatase activity			lung(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;0.000443)|BRCA - Breast invasive adenocarcinoma(9;0.209)	GBM - Glioblastoma multiforme(28;0.0126)		CTTCCCCATTGGGAAGGGAGG	0.552													23	10					0	0	0.00106085	0	0
C12orf66	144577	broad.mit.edu	37	12	64609701	64609701	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:64609701A>T	uc001srw.3	-	2	337	c.278T>A	c.(277-279)ATC>AAC	p.I93N	C12orf66_uc009zql.2_Missense_Mutation_p.I40N	NM_152440	NP_689653	Q96MD2	CL066_HUMAN	hypothetical protein LOC144577	93										ovary(1)	1						TGAAGTATAGATGGTGCGGAT	0.507													11	27					0	0	0.000978159	0	0
BEST3	144453	broad.mit.edu	37	12	70088168	70088168	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:70088168G>A	uc001svg.2	-	3	456	c.229C>T	c.(229-231)CCA>TCA	p.P77S	BEST3_uc001svd.1_Missense_Mutation_p.P77S|BEST3_uc001sve.1_Intron|BEST3_uc010stm.1_Intron|BEST3_uc001svh.2_Intron|BEST3_uc001svi.1_Intron	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	77	Helical; (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			AAGGTTACTGGAATTTGTTCA	0.403													14	11					0	0	0.00244969	0	0
PTPRB	5787	broad.mit.edu	37	12	70954661	70954661	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:70954661G>A	uc001swb.3	-	15	3598	c.3568C>T	c.(3568-3570)CTT>TTT	p.L1190F	PTPRB_uc010sto.1_Missense_Mutation_p.L1100F|PTPRB_uc010stp.1_Missense_Mutation_p.L1100F|PTPRB_uc001swc.3_Missense_Mutation_p.L1408F|PTPRB_uc001swa.3_Missense_Mutation_p.L1320F|PTPRB_uc001swd.3_Missense_Mutation_p.L1407F|PTPRB_uc009zrr.1_Missense_Mutation_p.L1287F	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1190	Fibronectin type-III 14.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TTGAACCAAAGGCTGTCTGTC	0.448													27	55					0	0	0.00106085	0	0
PTPRB	5787	broad.mit.edu	37	12	70988398	70988398	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:70988398C>T	uc001swb.3	-	4	741	c.711G>A	c.(709-711)ATG>ATA	p.M237I	PTPRB_uc010sto.1_Missense_Mutation_p.M237I|PTPRB_uc010stp.1_Missense_Mutation_p.M237I|PTPRB_uc001swc.3_Missense_Mutation_p.M455I|PTPRB_uc001swa.3_Missense_Mutation_p.M455I|PTPRB_uc001swd.3_Missense_Mutation_p.M454I|PTPRB_uc009zrr.1_Missense_Mutation_p.M334I|PTPRB_uc001swe.2_Missense_Mutation_p.M455I	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	237	Fibronectin type-III 3.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TCCCTTTATCCATTAGCATCA	0.473													17	41					0	0	0.000566183	0	0
PTPRB	5787	broad.mit.edu	37	12	71029509	71029509	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:71029509C>T	uc001swc.3	-	2	437	c.393G>A	c.(391-393)ATG>ATA	p.M131I	PTPRB_uc001swa.3_Missense_Mutation_p.M131I|PTPRB_uc001swd.3_Missense_Mutation_p.M130I|PTPRB_uc009zrr.1_Intron|PTPRB_uc001swe.2_Missense_Mutation_p.M131I	NM_001109754	NP_001103224	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	Error:Variant_position_missing_in_P23467_after_alignment					angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			CATCTATTTTCATCCAGCTAT	0.438													11	29					0	0	0.000978159	0	0
LGR5	8549	broad.mit.edu	37	12	71946912	71946912	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:71946912C>T	uc001swl.2	+	5	536	c.488C>T	c.(487-489)TCC>TTC	p.S163F	LGR5_uc001swm.2_Missense_Mutation_p.S163F|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	163	Extracellular (Potential).|LRR 5.					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						GGCCTGCATTCCCTGAGGCAC	0.507													93	228					0	0	0.00361006	0	0
TBC1D15	64786	broad.mit.edu	37	12	72316796	72316796	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:72316796C>T	uc001swu.2	+	18	1963	c.1954C>T	c.(1954-1956)CTT>TTT	p.L652F	TBC1D15_uc010stt.1_Missense_Mutation_p.L621F|TBC1D15_uc001swv.2_Missense_Mutation_p.L635F|TBC1D15_uc001sww.2_Missense_Mutation_p.L384F	NM_022771	NP_073608	Q8TC07	TBC15_HUMAN	TBC1 domain family, member 15 isoform 1	630							protein binding|Rab GTPase activator activity				0						GATCCTTGGGCTTCAAGGCAG	0.398													22	47					0	0	0.00229938	0	0
SYT1	6857	broad.mit.edu	37	12	79693175	79693175	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:79693175G>A	uc001sys.2	+	9	1325	c.654G>A	c.(652-654)TCG>TCA	p.S218S	SYT1_uc001syt.2_Silent_p.S218S|SYT1_uc001syu.2_Silent_p.S215S|SYT1_uc001syv.2_Silent_p.S218S	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	218	Cytoplasmic (Potential).|Phospholipid binding (Probable).|C2 1.				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						TACCATACTCGGAATTGGGTG	0.348													20	45					0	0	0.00278032	0	0
PPP1R12A	4659	broad.mit.edu	37	12	80266638	80266638	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:80266638G>A	uc001syz.2	-	2	585	c.318C>T	c.(316-318)GGC>GGT	p.G106G	PPP1R12A_uc010suc.1_Silent_p.G19G|PPP1R12A_uc001sza.2_Silent_p.G106G|PPP1R12A_uc010sud.1_Silent_p.G106G|PPP1R12A_uc001szb.2_Silent_p.G106G|PPP1R12A_uc001szc.2_Silent_p.G106G	NM_002480	NP_002471	O14974	MYPT1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	106	ANK 3.					contractile fiber	protein binding|signal transducer activity			ovary(2)|breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	7						GTGGTATCCAGCCTTCATTAT	0.368													16	50					0	0	0.00400662	0	0
LIN7A	8825	broad.mit.edu	37	12	81239607	81239607	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:81239607T>A	uc001szj.1	-	4	578	c.385A>T	c.(385-387)AAT>TAT	p.N129Y	LIN7A_uc001szk.1_RNA	NM_004664	NP_004655	O14910	LIN7A_HUMAN	lin-7 homolog A	129	PDZ.				exocytosis|protein complex assembly|protein transport	basolateral plasma membrane|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	L27 domain binding			ovary(1)|skin(1)	2						ATGGGGGAATTTTGCTCCTTT	0.498													15	46					0	0	0.00316338	0	0
ACSS3	79611	broad.mit.edu	37	12	81545701	81545701	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:81545701G>A	uc001szl.1	+	6	1091	c.1000G>A	c.(1000-1002)GAG>AAG	p.E334K	ACSS3_uc001szm.1_Missense_Mutation_p.E333K|ACSS3_uc001szn.1_Missense_Mutation_p.E16K	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	334						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						TCAACCCGGAGAGGTAATCGT	0.378													31	12					0	0	0.00178596	0	0
ACSS3	79611	broad.mit.edu	37	12	81627164	81627164	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:81627164G>T	uc001szl.1	+	13	1724	c.1633G>T	c.(1633-1635)GAA>TAA	p.E545*	ACSS3_uc001szm.1_Nonsense_Mutation_p.E544*|ACSS3_uc001szn.1_Nonsense_Mutation_p.E227*	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	545						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						TTACATGGATGAAGAAGGCTA	0.338													11	15					9.05144e-12	2.47907e-11	0.00185496	1	0
ACSS3	79611	broad.mit.edu	37	12	81647101	81647101	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:81647101G>A	uc001szl.1	+	14	1826	c.1735G>A	c.(1735-1737)GGT>AGT	p.G579S	ACSS3_uc001szm.1_Missense_Mutation_p.G578S|ACSS3_uc001szn.1_Missense_Mutation_p.G261S	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	579						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						CCTTTCCCATGGTACCGTGGC	0.333													82	49					0	0	0.00361006	0	0
PPFIA2	8499	broad.mit.edu	37	12	81688756	81688756	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:81688756C>T	uc001szo.1	-	24	2944	c.2783G>A	c.(2782-2784)GGT>GAT	p.G928D	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	854										ovary(3)|lung(2)|pancreas(1)	6						CATGATGGCACCACTCTTCAC	0.433													9	9					0	0	0.00136819	0	0
PPFIA2	8499	broad.mit.edu	37	12	81747075	81747075	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:81747075A>C	uc001szo.1	-	17	1978	c.1817T>G	c.(1816-1818)ATT>AGT	p.I606S	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	532										ovary(3)|lung(2)|pancreas(1)	6						TAGTACTCCAATCTGTTGAGT	0.363													17	44					0	0	0.000958276	0	0
PPFIA2	8499	broad.mit.edu	37	12	81751897	81751897	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:81751897C>T	uc001szo.1	-	16	1898	c.1737G>A	c.(1735-1737)AGG>AGA	p.R579R	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	505										ovary(3)|lung(2)|pancreas(1)	6						TGCGGCCTCTCCTTGGTCTTC	0.408													5	6					0	0	0.00116845	0	0
TSPAN19	144448	broad.mit.edu	37	12	85421700	85421700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:85421700C>T	uc009zsj.2	-	4	342	c.241G>A	c.(241-243)GAA>AAA	p.E81K		NM_001100917	NP_001094387	P0C672	TSN19_HUMAN	tetraspanin 19	81						integral to membrane				ovary(1)	1						CATCTGATTTCGTTGTGAATT	0.294													4	4					0	0	0.00024832	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85521762	85521762	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:85521762A>T	uc001tac.2	+	18	4271	c.4160A>T	c.(4159-4161)AAT>ATT	p.N1387I		NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	1387										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		AAAAGAGAAAATATTGTGAAT	0.348													55	46					0	0	0.00361006	0	0
CEP290	80184	broad.mit.edu	37	12	88482980	88482980	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:88482980G>A	uc001tar.2	-	31	4202	c.3858C>T	c.(3856-3858)TTC>TTT	p.F1286F	CEP290_uc001taq.2_Silent_p.F346F	NM_025114	NP_079390	O15078	CE290_HUMAN	centrosomal protein 290kDa	1286	Potential.				cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding			ovary(5)|breast(1)|pancreas(1)	7						TTGTTTTGGAGAACTTTTCCT	0.368													9	23					0	0	0.000274275	0	0
KERA	11081	broad.mit.edu	37	12	91449601	91449601	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:91449601T>C	uc001tbl.2	-	2	1077	c.458A>G	c.(457-459)AAG>AGG	p.K153R		NM_007035	NP_008966	O60938	KERA_HUMAN	keratocan precursor	153	LRR 4.				response to stimulus|visual perception	proteinaceous extracellular matrix				skin(1)	1						TCTGGACACCTTATTTCTAGC	0.403													9	6					0	0	0.000442599	0	0
DCN	1634	broad.mit.edu	37	12	91572209	91572209	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:91572209G>A	uc001tbs.2	-	1	215	c.121C>T	c.(121-123)CCT>TCT	p.P41S	DCN_uc001tbo.2_Missense_Mutation_p.P41S|DCN_uc001tbp.2_Missense_Mutation_p.P41S|DCN_uc001tbq.2_Missense_Mutation_p.P41S|DCN_uc001tbr.2_Missense_Mutation_p.P41S|DCN_uc001tbt.2_Missense_Mutation_p.P41S|DCN_uc001tbu.2_Missense_Mutation_p.P41S	NM_133503	NP_598010	P07585	PGS2_HUMAN	decorin isoform a preproprotein	41					organ morphogenesis	extracellular space				central_nervous_system(2)|ovary(1)|lung(1)	4						CGGTCATCAGGAACTTCTGGG	0.537											OREG0022021	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	26					0	0	0.00283554	0	0
CCDC41	51134	broad.mit.edu	37	12	94703864	94703864	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:94703864C>T	uc001tdd.2	-	16	2417	c.1831G>A	c.(1831-1833)GAC>AAC	p.D611N	CCDC41_uc001tde.2_Missense_Mutation_p.D611N|CCDC41_uc009zsw.1_RNA	NM_016122	NP_057206	Q9Y592	CCD41_HUMAN	NY-REN-58 antigen	603	Potential.										0						CTTGTATAGTCTTCAAAAGGA	0.294													23	17					0	0	0.00188189	0	0
METAP2	10988	broad.mit.edu	37	12	95887837	95887837	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:95887837C>G	uc001tec.2	+	5	568	c.434C>G	c.(433-435)ACA>AGA	p.T145R	METAP2_uc010suv.1_Missense_Mutation_p.T122R|METAP2_uc009ztd.2_Missense_Mutation_p.T109R|METAP2_uc001ted.2_Missense_Mutation_p.T144R|METAP2_uc001tef.2_Missense_Mutation_p.T122R|METAP2_uc001tee.2_RNA	NM_006838	NP_006829	P50579	AMPM2_HUMAN	methionyl aminopeptidase 2	145					N-terminal protein amino acid modification|peptidyl-methionine modification|protein processing|proteolysis	cytoplasm	aminopeptidase activity|metal ion binding|metalloexopeptidase activity				0					L-Methionine(DB00134)	TAAAGGCGAACAGCTGCTTGG	0.373													29	19					0	0	0.00127121	0	0
C12orf63	374467	broad.mit.edu	37	12	97043759	97043759	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:97043759C>T	uc001tet.1	+	2	134	c.56C>T	c.(55-57)TCA>TTA	p.S19L		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	19										skin(6)|ovary(1)	7						GACTCTCAATCAGGTTCTAGT	0.338													46	25					0	0	0.00361006	0	0
C12orf63	374467	broad.mit.edu	37	12	97137855	97137855	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:97137855C>T	uc001tet.1	+	22	2968	c.2890C>T	c.(2890-2892)CCA>TCA	p.P964S		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	964										skin(6)|ovary(1)	7						ATATGCAAATCCATTACAGCC	0.299													12	18					0	0	0.000978159	0	0
FAM71C	196472	broad.mit.edu	37	12	100043168	100043168	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:100043168G>A	uc001tgn.2	+	2	1140	c.718G>A	c.(718-720)GAG>AAG	p.E240K	ANKS1B_uc001tge.1_Intron|ANKS1B_uc001tgf.1_Intron|ANKS1B_uc009ztt.1_Intron	NM_153364	NP_699195	Q8NEG0	FA71C_HUMAN	hypothetical protein LOC196472	240											0				OV - Ovarian serous cystadenocarcinoma(2;0.00733)|Epithelial(2;0.0385)|all cancers(2;0.19)		TTATACAATAGAGATATGAAT	0.413													32	90					0	0	0.00327116	0	0
GAS2L3	283431	broad.mit.edu	37	12	101005900	101005900	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:101005900C>T	uc001thu.2	+	6	652	c.426C>T	c.(424-426)CTC>CTT	p.L142L	GAS2L3_uc009zty.2_Silent_p.L142L|GAS2L3_uc001thv.2_Silent_p.L38L	NM_174942	NP_777602	Q86XJ1	GA2L3_HUMAN	growth arrest-specific 2 like 3	142	CH.				cell cycle arrest					skin(1)	1						AAACTTACCTCTTTGAATCTG	0.383													26	68					0	0	0.00127121	0	0
ANO4	121601	broad.mit.edu	37	12	101295595	101295595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:101295595G>A	uc010svm.1	+	2	604	c.32G>A	c.(31-33)GGA>GAA	p.G11E	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Missense_Mutation_p.G11E|ANO4_uc001thx.2_Missense_Mutation_p.G11E	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	11	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						ATCACTAATGGAAAAACCAAA	0.493										HNSCC(74;0.22)			60	26					0	0	0.00361006	0	0
UTP20	27340	broad.mit.edu	37	12	101685850	101685850	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:101685850C>T	uc001tia.1	+	10	1297	c.1141C>T	c.(1141-1143)CCG>TCG	p.P381S		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	381					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						TGTTTCCTTGCCGGAGACCCT	0.299													35	98					0	0	0.000953801	0	0
STAB2	55576	broad.mit.edu	37	12	103984744	103984744	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:103984744G>A	uc001tjw.2	+	2	337	c.151G>A	c.(151-153)GGA>AGA	p.G51R		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	51	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TCTCAACCTTGGAGTCAAGTG	0.423													36	24					0	0	0.00128727	0	0
NT5DC3	51559	broad.mit.edu	37	12	104171831	104171831	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:104171831G>T	uc010swe.1	-	14	1464	c.1423C>A	c.(1423-1425)CAG>AAG	p.Q475K	NT5DC3_uc010swd.1_5'Flank	NM_001031701	NP_001026871	Q86UY8	NT5D3_HUMAN	5'-nucleotidase domain containing 3	475							hydrolase activity|metal ion binding			ovary(2)|skin(1)	3						CTTCCAAACTGGGCATTGAAG	0.453													13	37					0.00244969	0.00664202	0.00244969	1	0
CHST11	50515	broad.mit.edu	37	12	105150977	105150977	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:105150977C>T	uc001tkx.1	+	4	746	c.455C>T	c.(454-456)GCC>GTC	p.A152V	CHST11_uc001tky.2_Missense_Mutation_p.A147V|uc001tkz.2_5'Flank	NM_018413	NP_060883	Q9NPF2	CHSTB_HUMAN	carbohydrate sulfotransferase 11	152	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi membrane|integral to membrane	chondroitin 4-sulfotransferase activity|N-acetylgalactosamine 4-O-sulfotransferase activity				0						GAGATCCCGGCCAACGAGGCA	0.572													10	48					0	0	0.000978159	0	0
SLC41A2	84102	broad.mit.edu	37	12	105322023	105322023	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:105322023G>A	uc001tla.2	-	1	450	c.283C>T	c.(283-285)CAT>TAT	p.H95Y		NM_032148	NP_115524	Q96JW4	S41A2_HUMAN	solute carrier family 41, member 2	95	Extracellular.					integral to membrane|plasma membrane	magnesium ion transmembrane transporter activity			ovary(1)|skin(1)	2						TTATTGGCATGAAAAGACTGC	0.413													17	36					0	0	0.000958276	0	0
KIAA1033	23325	broad.mit.edu	37	12	105520946	105520946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:105520946C>T	uc001tld.2	+	13	1165	c.1078C>T	c.(1078-1080)CCT>TCT	p.P360S	KIAA1033_uc010swr.1_Missense_Mutation_p.P360S|KIAA1033_uc010sws.1_Missense_Mutation_p.P172S	NM_015275	NP_056090	Q2M389	WAHS7_HUMAN	hypothetical protein LOC23325	360					endosome transport	WASH complex				kidney(1)|central_nervous_system(1)	2						TATTTGGTTTCCTGATAATTT	0.368													45	27					0	0	0.00361006	0	0
NUAK1	9891	broad.mit.edu	37	12	106460902	106460902	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:106460902C>T	uc001tlj.1	-	7	3044	c.1664G>A	c.(1663-1665)GGT>GAT	p.G555D		NM_014840	NP_055655	O60285	NUAK1_HUMAN	AMPK-related protein kinase 5	555							ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2						GGCAGGGACACCAGGCTCTGA	0.587													29	19					0	0	0.0024448	0	0
BTBD11	121551	broad.mit.edu	37	12	108008863	108008863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:108008863C>T	uc001tmk.1	+	7	2446	c.1925C>T	c.(1924-1926)CCA>CTA	p.P642L	BTBD11_uc009zut.1_Missense_Mutation_p.P642L|BTBD11_uc001tmj.2_Missense_Mutation_p.P642L|BTBD11_uc001tml.1_Missense_Mutation_p.P179L	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	642						integral to membrane	DNA binding			skin(2)|ovary(1)	3						CATAAATATCCATCCGTCCAC	0.418													11	38					0	0	0.000673444	0	0
CORO1C	23603	broad.mit.edu	37	12	109051152	109051152	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:109051152G>A	uc001tnj.2	-	6	774	c.678C>T	c.(676-678)TTC>TTT	p.F226F	CORO1C_uc009zva.2_Silent_p.F279F|CORO1C_uc010sxf.1_Silent_p.F189F	NM_014325	NP_055140	Q9ULV4	COR1C_HUMAN	coronin, actin binding protein, 1C isoform 1	226					actin cytoskeleton organization|phagocytosis|signal transduction	actin cytoskeleton	actin filament binding			skin(3)	3						CATCGGCCAGGAAGATGGCTC	0.552													18	45					0	0	0.00074312	0	0
ALKBH2	121642	broad.mit.edu	37	12	109527987	109527987	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:109527987G>A	uc001tnx.2	-	3	699	c.306C>T	c.(304-306)TTC>TTT	p.F102F	ALKBH2_uc001tny.2_Silent_p.F102F|ALKBH2_uc010sxj.1_Silent_p.F102F|ALKBH2_uc009zvd.2_Intron|ALKBH2_uc010sxk.1_Intron	NM_001145374	NP_001138846	Q6NS38	ALKB2_HUMAN	AlkB homolog 2	102	Substrate binding.				DNA dealkylation involved in DNA repair|oxidative DNA demethylation	nucleoplasm	cytosine C-5 DNA demethylase activity|damaged DNA binding|DNA-N1-methyladenine dioxygenase activity|ferrous iron binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0					Vitamin C(DB00126)	GCCACTTCCCGAATACCTGGA	0.582								Direct_reversal_of_damage					30	20					0	0	0.0024448	0	0
ACACB	32	broad.mit.edu	37	12	109639469	109639470	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:109639469_109639470CC>TA	uc001tob.2	+	19	2995_2996	c.2876_2877CC>TA	c.(2875-2877)GCC>GTA	p.A959V	ACACB_uc001toc.2_Missense_Mutation_p.A959V	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	959	Biotinyl-binding.				acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	TGCGTGGTGGCCAGGCTGGAGC	0.589													34	26					0	0	6.4e-05	0	0
ACACB	32	broad.mit.edu	37	12	109694020	109694021	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:109694020_109694021CC>TT	uc001tob.2	+	45	6361_6362	c.6242_6243CC>TT	c.(6241-6243)ACC>ATT	p.T2081I	ACACB_uc001toc.2_Missense_Mutation_p.T2081I|ACACB_uc010sxl.1_RNA|ACACB_uc001tod.2_RNA|ACACB_uc010sxm.1_Missense_Mutation_p.T747I	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	2081	Carboxyltransferase.				acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	TGGGCGCAGACCGTGGTGACAG	0.599													6	38					0	0	6.4e-05	0	0
MYO1H	283446	broad.mit.edu	37	12	109834264	109834264	+	Silent	SNP	G	A	A	rs142805645	by1000genomes	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:109834264G>A	uc010sxn.1	+	3	318	c.318G>A	c.(316-318)GAG>GAA	p.E106E		NM_001101421	NP_001094891	Q8N1T3	MYO1H_HUMAN	myosin 1H	Error:Variant_position_missing_in_B4DNW6_after_alignment						myosin complex	motor activity				0						TTTCTGGAGAGAGTGGGGCAG	0.488													14	28					0	0	0.00316338	0	0
CCDC63	160762	broad.mit.edu	37	12	111342572	111342572	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:111342572C>T	uc001trv.1	+	11	1718	c.1523C>T	c.(1522-1524)CCC>CTC	p.P508L	CCDC63_uc010sye.1_Missense_Mutation_p.P468L|CCDC63_uc001trw.1_Missense_Mutation_p.P423L	NM_152591	NP_689804	Q8NA47	CCD63_HUMAN	coiled-coil domain containing 63	508										skin(6)|ovary(1)|pancreas(1)	8						GGGGCTGACCCCTTCAGCGAC	0.592													10	40					0	0	0.00136819	0	0
CUX2	23316	broad.mit.edu	37	12	111748222	111748223	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:111748222_111748223CC>TT	uc001tsa.1	+	15	1789_1790	c.1636_1637CC>TT	c.(1636-1638)CCC>TTC	p.P546F		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	546	CUT 1.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						AGCGGCGGGGCCCGGGGCAGAG	0.708													5	15					0	0	6.4e-05	0	0
C12orf51	283450	broad.mit.edu	37	12	112622558	112622558	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:112622558G>A	uc009zwc.2	-	54	8964	c.8946C>T	c.(8944-8946)ATC>ATT	p.I2982I		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						GGTGGGTGGGGATCCCGGAGA	0.687													33	76					0	0	0.0024448	0	0
RPH3A	22895	broad.mit.edu	37	12	113306309	113306309	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:113306309G>A	uc010syl.1	+	8	881	c.519G>A	c.(517-519)AAG>AAA	p.K173K	RPH3A_uc001ttz.2_Silent_p.K173K|RPH3A_uc001tty.2_Silent_p.K169K|RPH3A_uc009zwe.1_Silent_p.K169K|RPH3A_uc010sym.1_Silent_p.K124K|RPH3A_uc001tua.2_5'UTR	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	173	Pro-rich.				intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		TGCCTATAAAGAAGACCAAGC	0.592													13	26					0	0	0.00136819	0	0
RASAL1	8437	broad.mit.edu	37	12	113543663	113543663	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:113543663G>A	uc001tum.1	-	17	1976	c.1683C>T	c.(1681-1683)TTC>TTT	p.F561F	RASAL1_uc010syp.1_Silent_p.F562F|RASAL1_uc001tul.2_Silent_p.F561F|RASAL1_uc001tun.1_Silent_p.F563F|RASAL1_uc010syq.1_Silent_p.F562F|RASAL1_uc001tuo.3_Silent_p.F562F	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	561					intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity			ovary(2)|skin(2)	4						CCGAGGGCGGGAACAGGGCCC	0.622													22	60					0	0	0.00332997	0	0
C12orf52	84934	broad.mit.edu	37	12	113629232	113629232	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:113629232C>T	uc001tur.1	+	4	888	c.420C>T	c.(418-420)CTC>CTT	p.L140L	C12orf52_uc009zwg.1_Silent_p.L137L|C12orf52_uc001tus.1_Silent_p.L140L|C12orf52_uc001tut.1_Silent_p.L164L	NM_032848	NP_116237	Q96K30	RITA_HUMAN	hypothetical protein LOC84934	140	Interaction with RBPJ/RBPSUH.				negative regulation of Notch signaling pathway|negative regulation of transcription from RNA polymerase II promoter|neurogenesis|Notch signaling pathway|nuclear export	centrosome|nucleus	tubulin binding				0						TCCGTGCTCTCTTGTGGACGC	0.662													5	12					0	0	0.000602214	0	0
TPCN1	53373	broad.mit.edu	37	12	113729446	113729446	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:113729446C>T	uc001tuw.2	+	24	2289	c.1992C>T	c.(1990-1992)AGC>AGT	p.S664S	TPCN1_uc001tux.2_Silent_p.S736S|TPCN1_uc010syu.1_5'Flank	NM_017901	NP_060371	Q9ULQ1	TPC1_HUMAN	two pore segment channel 1 isoform 2	664	Extracellular (Potential).					endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated ion channel activity			skin(2)|ovary(1)	3						CCCACTGGAGCCGCCTCTACT	0.597													3	8					0	0	0.00024832	0	0
TBX5	6910	broad.mit.edu	37	12	114793644	114793644	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:114793644G>A	uc001tvo.2	-	9	1745	c.1250C>T	c.(1249-1251)CCC>CTC	p.P417L	TBX5_uc001tvp.2_Missense_Mutation_p.P417L|TBX5_uc001tvq.2_Missense_Mutation_p.P367L	NM_181486	NP_852259	Q99593	TBX5_HUMAN	T-box 5 isoform 1	417					cardiac left ventricle formation|cell migration involved in coronary vasculogenesis|cell-cell signaling|embryonic arm morphogenesis|induction of apoptosis|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|pericardium development|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|ventricular septum development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(6)|pancreas(1)|skin(1)	8	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0893)		CCTGTCCATGGGCTGCACGGT	0.662													19	33					0	0	0.00074312	0	0
TBX5	6910	broad.mit.edu	37	12	114836398	114836398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:114836398G>A	uc001tvo.2	-	5	985	c.490C>T	c.(490-492)CAC>TAC	p.H164Y	TBX5_uc001tvp.2_Missense_Mutation_p.H164Y|TBX5_uc001tvq.2_Missense_Mutation_p.H114Y|TBX5_uc010syv.1_Missense_Mutation_p.H164Y	NM_181486	NP_852259	Q99593	TBX5_HUMAN	T-box 5 isoform 1	164	T-box.				cardiac left ventricle formation|cell migration involved in coronary vasculogenesis|cell-cell signaling|embryonic arm morphogenesis|induction of apoptosis|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|pericardium development|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|ventricular septum development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(6)|pancreas(1)|skin(1)	8	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0893)		GGGTCCAGGTGGTTGTTGGTG	0.473													8	17					0	0	0.000274275	0	0
FBXW8	26259	broad.mit.edu	37	12	117465961	117465961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:117465961C>T	uc001twg.1	+	11	1863	c.1781C>T	c.(1780-1782)CCC>CTC	p.P594L	FBXW8_uc001twf.1_Missense_Mutation_p.P528L|FBXW8_uc009zwp.1_RNA	NM_153348	NP_699179	Q8N3Y1	FBXW8_HUMAN	F-box and WD repeat domain containing 8 isoform	594							protein binding			ovary(2)|pancreas(1)	3	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0353)		CTGGCCTTTCCCTATAACCAT	0.532													27	16					0	0	0.00127121	0	0
NOS1	4842	broad.mit.edu	37	12	117657984	117657984	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:117657984C>T	uc001twm.1	-	27	4752	c.4066G>A	c.(4066-4068)GAC>AAC	p.D1356N		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	1356	NADP (By similarity).				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	ATGGTGACGTCCCCACAGACG	0.602													46	116					0	0	0.00361006	0	0
NOS1	4842	broad.mit.edu	37	12	117723924	117723924	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:117723924C>T	uc001twm.1	-	6	1961	c.1275G>A	c.(1273-1275)CAG>CAA	p.Q425Q		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	425					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GCTTGGACCACTGGATCCTGC	0.542													19	57					0	0	0.00152264	0	0
RAB35	11021	broad.mit.edu	37	12	120536901	120536902	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:120536901_120536902GG>AA	uc001txm.1	-	4	429_430	c.284_285CC>TT	c.(283-285)TCC>TTT	p.S95F	RAB35_uc010szg.1_5'UTR|RAB35_uc009zww.1_5'UTR|RAB35_uc010szh.1_Missense_Mutation_p.S95F	NM_006861	NP_006852	Q15286	RAB35_HUMAN	RAB35, member RAS oncogene family	95					cytokinesis|endosome transport|protein transport|small GTPase mediated signal transduction	cell projection membrane|clathrin-coated endocytic vesicle|coated pit|endosome|intercellular bridge|melanosome	GTP binding|GTPase activity|phosphatidylinositol-4,5-bisphosphate binding				0	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.248)		CGTTGACAAAGGACTCGGCACT	0.579													14	47					0	0	6.4e-05	0	0
WDR66	144406	broad.mit.edu	37	12	122359542	122359542	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:122359542G>A	uc009zxk.2	+	2	473	c.331G>A	c.(331-333)GAG>AAG	p.E111K		NM_144668	NP_653269	Q8TBY9	WDR66_HUMAN	WD repeat domain 66	111							calcium ion binding			ovary(1)|skin(1)	2	all_neural(191;0.0496)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000155)|Epithelial(86;0.000634)|BRCA - Breast invasive adenocarcinoma(302;0.248)		GATCCGTTTGGAGACACAGAT	0.388													20	47					0	0	0.00188189	0	0
BCL7A	605	broad.mit.edu	37	12	122496996	122496996	+	Splice_Site	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:122496996A>G	uc001ubp.2	+	6	699	c.562_splice	c.e6-2	p.D188_splice	BCL7A_uc001ubo.2_Splice_Site_p.D209_splice	NM_001024808	NP_001019979	Q4VC05	BCL7A_HUMAN	B-cell CLL/lymphoma 7A isoform b						negative regulation of transcription, DNA-dependent					ovary(1)|lung(1)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000202)|Epithelial(86;0.000386)|BRCA - Breast invasive adenocarcinoma(302;0.231)		CCTCTCCCCAAGGATTTGGAA	0.537			T	MYC	BNHL								28	33					0	0	0.00327116	0	0
IL31	386653	broad.mit.edu	37	12	122658458	122658458	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:122658458C>T	uc001ubv.2	-	2	125	c.98G>A	c.(97-99)CGA>CAA	p.R33Q	LRRC43_uc001ubw.3_Intron|LRRC43_uc009zxl.1_Intron	NM_001014336	NP_001014358	Q6EBC2	IL31_HUMAN	interleukin 31 precursor	33						extracellular space	cytokine activity			central_nervous_system(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)	Lung NSC(355;6.93e-05)|Breast(359;0.0544)		OV - Ovarian serous cystadenocarcinoma(86;3.27e-29)|Epithelial(86;4.86e-27)|BRCA - Breast invasive adenocarcinoma(302;0.223)		ATCACTTGGTCGTAGTAAACG	0.502													52	28					0	0	0.00361006	0	0
VPS33A	65082	broad.mit.edu	37	12	122748207	122748207	+	Missense_Mutation	SNP	G	A	A	rs150472752		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:122748207G>A	uc001ucd.2	-	3	321	c.208C>T	c.(208-210)CGT>TGT	p.R70C	VPS33A_uc001ucc.2_RNA|VPS33A_uc001uce.2_Missense_Mutation_p.R70C	NM_022916	NP_075067	Q96AX1	VP33A_HUMAN	vacuolar protein sorting 33A	70					lysosome localization|melanosome localization|platelet formation|protein transport|regulation of developmental pigmentation|vesicle docking involved in exocytosis	early endosome|late endosome membrane|lysosomal membrane|perinuclear region of cytoplasm	protein binding			skin(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000336)|Epithelial(86;0.000606)|BRCA - Breast invasive adenocarcinoma(302;0.23)		GCCGGCAAACGATTTCCTTTA	0.373													18	39					0	0	0.000566183	0	0
MPHOSPH9	10198	broad.mit.edu	37	12	123687382	123687382	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:123687382G>A	uc001uel.2	-	6	1221	c.1114C>T	c.(1114-1116)CAG>TAG	p.Q372*	MPHOSPH9_uc010tal.1_Intron|MPHOSPH9_uc010tam.1_RNA|MPHOSPH9_uc001uem.2_Intron	NM_022782	NP_073619	Q99550	MPP9_HUMAN	M-phase phosphoprotein 9	372					M phase of mitotic cell cycle	centriole|Golgi membrane					0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000182)|Epithelial(86;0.00046)|BRCA - Breast invasive adenocarcinoma(302;0.169)		TGGAATGTCTGATTTTTCCAA	0.398													49	88					0	0	0.00361006	0	0
SNRNP35	11066	broad.mit.edu	37	12	123950399	123950399	+	Silent	SNP	C	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:123950399C>G	uc001ufb.1	+	2	428	c.312C>G	c.(310-312)GCC>GCG	p.A104A	SNRNP35_uc010tar.1_Silent_p.A109A|SNRNP35_uc009zxz.2_Silent_p.A109A|SNRNP35_uc001ufc.1_Intron	NM_022717	NP_073208	Q16560	U1SBP_HUMAN	small nuclear ribonucleoprotein 35kDa (U11/U12)	104	RRM.				mRNA processing	U12-type spliceosomal complex	nucleotide binding|RNA binding				0						AGGAGCGTGCCGTGATCAAAG	0.527													76	42					0	0	0.00361006	0	0
TCTN2	79867	broad.mit.edu	37	12	124163773	124163773	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:124163773C>T	uc001ufp.2	+	5	629	c.501C>T	c.(499-501)CCC>CCT	p.P167P	TCTN2_uc009zya.2_Silent_p.P166P	NM_024809	NP_079085	Q96GX1	TECT2_HUMAN	tectonic family member 2 isoform 1	167	Extracellular (Potential).				cilium assembly|smoothened signaling pathway	integral to membrane				ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000163)|Epithelial(86;0.000502)|all cancers(50;0.00451)		TGTATCAGCCCCTTGGCCCTT	0.438													58	116					0	0	0.00361006	0	0
DNAH10	196385	broad.mit.edu	37	12	124333331	124333331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:124333331G>A	uc001uft.3	+	33	5675	c.5650G>A	c.(5650-5652)GAT>AAT	p.D1884N		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1884	AAA 1 (By similarity).|CFDEFNR motif.				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GGGCTGCTTTGATGAGTTTAA	0.498													9	21					0	0	0.000274275	0	0
DNAH10	196385	broad.mit.edu	37	12	124335526	124335526	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:124335526C>T	uc001uft.3	+	34	5865	c.5840C>T	c.(5839-5841)TCG>TTG	p.S1947L		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1947	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CTGCCCGAGTCGGTGAAGGCG	0.617													15	37					0	0	0.00316338	0	0
DNAH10	196385	broad.mit.edu	37	12	124399401	124399401	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:124399401G>A	uc001uft.3	+	61	10248	c.10223G>A	c.(10222-10224)TGG>TAG	p.W3408*		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	3408	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TCTTCCAGATGGGGATCCCAG	0.562													7	21					0	0	0.00307968	0	0
NCOR2	9612	broad.mit.edu	37	12	124835140	124835140	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:124835140G>A	uc010tba.1	-	28	3978	c.3861C>T	c.(3859-3861)TCC>TCT	p.S1287S	NCOR2_uc010tay.1_Silent_p.S1286S|NCOR2_uc010taz.1_Silent_p.S1270S|NCOR2_uc010tbb.1_Silent_p.S1279S|NCOR2_uc010tbc.1_Silent_p.S1269S|NCOR2_uc001ugj.1_Silent_p.S1287S	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	1287					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		CACCCTCATAGGACAAGACGT	0.642													24	75					0	0	0.000878237	0	0
TMEM132B	114795	broad.mit.edu	37	12	126138844	126138844	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:126138844C>T	uc001uhe.1	+	9	2833	c.2825C>T	c.(2824-2826)TCC>TTC	p.S942F	TMEM132B_uc001uhf.1_Missense_Mutation_p.S454F	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	942	Cytoplasmic (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		ATCCCCCATTCCCACGACTGG	0.512													23	58					0	0	0.00395357	0	0
TMEM132B	114795	broad.mit.edu	37	12	126138962	126138962	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:126138962G>A	uc001uhe.1	+	9	2951	c.2943G>A	c.(2941-2943)AGG>AGA	p.R981R	TMEM132B_uc001uhf.1_Silent_p.R493R	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	981	Cytoplasmic (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		TCGAGGAGAGGAACTTCCTTC	0.438													11	20					0	0	0.000673444	0	0
GPR133	283383	broad.mit.edu	37	12	131490580	131490580	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:131490580C>T	uc001uit.3	+	12	1878	c.1319C>T	c.(1318-1320)CCC>CTC	p.P440L	GPR133_uc010tbm.1_Missense_Mutation_p.P472L	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor	440	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		AACATCTGGCCCGCCCACACC	0.657													6	27					0	0	0.00116845	0	0
EP400	57634	broad.mit.edu	37	12	132546845	132546845	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:132546845C>T	uc001ujn.2	+	45	8110	c.8075C>T	c.(8074-8076)TCT>TTT	p.S2692F	EP400_uc001ujl.2_Missense_Mutation_p.S2691F|EP400_uc001ujm.2_Missense_Mutation_p.S2611F|EP400_uc001ujp.2_5'Flank	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2728	Interaction with ZNF42 (By similarity).				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		CCGGCACGGTCTTTGGTGCCC	0.617													18	36					0	0	0.00074312	0	0
GOLGA3	2802	broad.mit.edu	37	12	133353292	133353292	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:133353292G>A	uc001ukz.1	-	21	4465	c.3906C>T	c.(3904-3906)TCC>TCT	p.S1302S	GOLGA3_uc001ula.1_Silent_p.S1302S	NM_005895	NP_005886	Q08378	GOGA3_HUMAN	Golgi autoantigen, golgin subfamily a, 3	1302	Potential.|Gln-rich.				intra-Golgi vesicle-mediated transport	Golgi cisterna membrane|Golgi transport complex	protein binding|transporter activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.27e-08)|Epithelial(86;3.34e-07)|all cancers(50;9.4e-06)		GCTGCTTCAAGGACTGGATTT	0.502													24	67					0	0	0.00229938	0	0
PSPC1	55269	broad.mit.edu	37	13	20346608	20346608	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr13:20346608G>A	uc001uml.2	-	2	634	c.448C>T	c.(448-450)CGC>TGC	p.R150C	PSPC1_uc001umj.1_RNA|PSPC1_uc001umk.1_RNA	NM_001042414	NP_001035879	Q8WXF1	PSPC1_HUMAN	paraspeckle protein 1	150	RRM 1.|Sufficient for paraspeckles localization.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear matrix|nucleolus	nucleotide binding|protein binding|RNA binding			breast(1)	1		all_cancers(29;1.25e-22)|all_lung(29;1.97e-20)|all_epithelial(30;2.29e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;4.63e-06)|Epithelial(112;2.29e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00256)|Lung(94;0.00975)|LUSC - Lung squamous cell carcinoma(192;0.0483)		GTAGCGAAGCGAATCCGTAGA	0.453													24	37					0	0	0.00278032	0	0
GJA3	2700	broad.mit.edu	37	13	20716813	20716813	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr13:20716813G>A	uc001umx.1	-	2	787	c.615C>T	c.(613-615)ATC>ATT	p.I205I		NM_021954	NP_068773	Q9Y6H8	CXA3_HUMAN	connexin 46	205	Helical; (Potential).				cell-cell signaling|visual perception	connexon complex|integral to membrane				pancreas(1)	1		all_cancers(29;1.4e-21)|all_epithelial(30;8.75e-19)|all_lung(29;1.28e-17)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;0.000554)|Epithelial(112;0.000872)|OV - Ovarian serous cystadenocarcinoma(117;0.0105)|Lung(94;0.0251)|LUSC - Lung squamous cell carcinoma(192;0.0784)		CCAGCATGAAGATGATGAAGA	0.632													17	25					0	0	0.000566183	0	0
LATS2	26524	broad.mit.edu	37	13	21562189	21562189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr13:21562189G>A	uc009zzs.2	-	4	2095	c.1730C>T	c.(1729-1731)CCC>CTC	p.P577L	LATS2_uc001unr.3_Missense_Mutation_p.P577L	NM_014572	NP_055387	Q9NRM7	LATS2_HUMAN	LATS, large tumor suppressor, homolog 2	577					cell division|G1/S transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|intracellular protein kinase cascade|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity	microtubule organizing center|nucleus|spindle pole	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(3)|ovary(2)|breast(1)|pancreas(1)	10		all_cancers(29;4.74e-22)|all_epithelial(30;1.45e-18)|all_lung(29;4.69e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000781)|Epithelial(112;0.00144)|OV - Ovarian serous cystadenocarcinoma(117;0.0183)|Lung(94;0.0375)|LUSC - Lung squamous cell carcinoma(192;0.104)		GACGGGAACGGGAGAGGTCTG	0.572													53	52					0	0	0.00361006	0	0
ATP12A	479	broad.mit.edu	37	13	25280559	25280559	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr13:25280559C>T	uc001upp.2	+	15	2314	c.2127C>T	c.(2125-2127)TCC>TCT	p.S709S	ATP12A_uc010aaa.2_Silent_p.S715S	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	709	Cytoplasmic (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	CCCGGACATCCCCCCAGCAGA	0.572													21	0					0	0	0.00332997	0	0
RNF17	56163	broad.mit.edu	37	13	25356014	25356014	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr13:25356014G>A	uc001upr.2	+	6	584	c.543G>A	c.(541-543)GAG>GAA	p.E181E	RNF17_uc010tdd.1_Silent_p.E40E|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Silent_p.E181E|RNF17_uc001ups.2_Silent_p.E120E|RNF17_uc001upq.1_Silent_p.E181E	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	181					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		AAACGATAGAGGAAAGAGAAA	0.308													10	12					0	0	0.00185496	0	0
RNF17	56163	broad.mit.edu	37	13	25439062	25439062	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr13:25439062G>A	uc001upr.2	+	29	4068	c.4027G>A	c.(4027-4029)GGA>AGA	p.G1343R	RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.G1339R|RNF17_uc001ups.2_Missense_Mutation_p.G1282R|RNF17_uc010aac.2_Missense_Mutation_p.G535R|RNF17_uc010aad.2_Intron	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	1343					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		CTATTTTGATGGAATGTCACT	0.289													40	34					0	0	0.00170553	0	0
C13orf26	122046	broad.mit.edu	37	13	31540496	31540496	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr13:31540496G>A	uc001uti.2	+	5	626	c.607G>A	c.(607-609)GGA>AGA	p.G203R		NM_152325	NP_689538	Q8N6G2	CM026_HUMAN	hypothetical protein LOC122046	203										ovary(2)|skin(1)	3		Lung SC(185;0.0281)		all cancers(112;0.0176)|Epithelial(112;0.0768)|OV - Ovarian serous cystadenocarcinoma(117;0.0852)		TTTCAAATATGGATGCTACTC	0.333													23	56					0	0	0.00395357	0	0
NAA16	79612	broad.mit.edu	37	13	41949637	41949637	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr13:41949637C>T	uc001uyf.2	+	20	2818	c.2494C>T	c.(2494-2496)CCT>TCT	p.P832S	NAA16_uc010tfg.1_RNA	NM_024561	NP_078837	Q6N069	NAA16_HUMAN	NMDA receptor regulated 1-like protein isoform	832					N-terminal protein amino acid acetylation|positive regulation of transcription, DNA-dependent	cytoplasm|transcription factor complex	binding			central_nervous_system(1)	1						TAACCTGCTTCCTTTTACATC	0.408													29	32					0	0	0.00209593	0	0
ATP7B	540	broad.mit.edu	37	13	52520510	52520510	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr13:52520510G>A	uc001vfw.2	-	13	3127	c.2970C>T	c.(2968-2970)GCC>GCT	p.A990A	ATP7B_uc010adv.2_Silent_p.A560A|ATP7B_uc001vfx.2_Silent_p.A783A|ATP7B_uc001vfy.2_Silent_p.A879A|ATP7B_uc010tgt.1_Intron|ATP7B_uc010tgu.1_Silent_p.A942A|ATP7B_uc010tgv.1_Silent_p.A912A|ATP7B_uc001vfv.2_Silent_p.A262A|ATP7B_uc010tgs.1_Silent_p.A262A	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	990	Helical; (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		CCGTGGGCGTGGCCAGCCCCA	0.637									Wilson_disease				23	0					0	0	0.00278032	0	0
ATP7B	540	broad.mit.edu	37	13	52548313	52548313	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr13:52548313G>A	uc001vfw.2	-	2	1200	c.1043C>T	c.(1042-1044)TCC>TTC	p.S348F	ATP7B_uc010adv.2_Missense_Mutation_p.S348F|ATP7B_uc001vfx.2_Missense_Mutation_p.S348F|ATP7B_uc001vfy.2_Intron|ATP7B_uc010tgt.1_Missense_Mutation_p.S348F|ATP7B_uc010tgu.1_Missense_Mutation_p.S348F|ATP7B_uc010tgv.1_Missense_Mutation_p.S348F|ATP7B_uc010tgw.1_Missense_Mutation_p.S316F	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	348	Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		TCTCGGTGGGGAGCCAGGGGA	0.532									Wilson_disease				31	33					0	0	0.0024448	0	0
NEK5	341676	broad.mit.edu	37	13	52676396	52676396	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr13:52676396C>T	uc001vge.2	-	10	782	c.642G>A	c.(640-642)CTG>CTA	p.L214L	NEK5_uc001vgf.2_Silent_p.L214L	NM_199289	NP_954983	Q6P3R8	NEK5_HUMAN	NIMA-related kinase 5	214	Protein kinase.						ATP binding|metal ion binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)	1		Breast(56;0.00173)|Lung NSC(96;0.0168)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;3.7e-08)		GACAAATCTTCAGAACCAGCT	0.403													47	69					0	0	0.00361006	0	0
SLITRK1	114798	broad.mit.edu	37	13	84453565	84453565	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr13:84453565G>A	uc001vlk.2	-	1	2964	c.2078C>T	c.(2077-2079)TCG>TTG	p.S693L		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	693	Cytoplasmic (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		GTCTGAGAGCGAGTGAGAGCC	0.587													11	22					0	0	0.000978159	0	0
ABCC4	10257	broad.mit.edu	37	13	95673920	95673920	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr13:95673920T>C	uc001vmd.3	-	31	4006	c.3887A>G	c.(3886-3888)AAT>AGT	p.N1296S	ABCC4_uc010afj.2_Missense_Mutation_p.N87S|ABCC4_uc010afk.2_Missense_Mutation_p.N1249S	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	1296					platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	ATGTGGATAATTTCTTTTGAA	0.368													8	39					0	0	0.00316338	0	0
ABCC4	10257	broad.mit.edu	37	13	95673930	95673930	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr13:95673930A>G	uc001vmd.3	-	31	3996	c.3877T>C	c.(3877-3879)TTC>CTC	p.F1293L	ABCC4_uc010afj.2_Missense_Mutation_p.F84L|ABCC4_uc010afk.2_Missense_Mutation_p.F1246L	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	1293					platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	TTTCTTTTGAAGTATACCTAG	0.368													35	2					0	0	0.00285205	0	0
ABHD13	84945	broad.mit.edu	37	13	108881849	108881849	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr13:108881849G>A	uc001vqq.2	+	2	548	c.283G>A	c.(283-285)GAT>AAT	p.D95N		NM_032859	NP_116248	Q7L211	ABHDD_HUMAN	abhydrolase domain containing 13	95						integral to membrane	hydrolase activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(23;0.000238)|all_neural(89;0.00256)|Lung NSC(43;0.0056)|Medulloblastoma(90;0.00596)|Lung SC(71;0.104)					CAGAACCAAAGATGGAATACG	0.393													13	32					0	0	0.00244969	0	0
COL4A2	1284	broad.mit.edu	37	13	111090369	111090369	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr13:111090369G>A	uc001vqx.2	+	14	1135	c.846G>A	c.(844-846)GGG>GGA	p.G282G		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	282	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			GCAGTGAGGGGGAACCAGGAA	0.493													44	3					0	0	0.00361006	0	0
C13orf16	121793	broad.mit.edu	37	13	111995208	111995208	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr13:111995208G>A	uc001vsa.2	+	5	474	c.345G>A	c.(343-345)GGG>GGA	p.G115G		NM_152324	NP_689537	Q8N6K0	CM016_HUMAN	hypothetical protein LOC121793	115	Cytoplasmic (Potential).					integral to membrane					0	all_lung(23;3.96e-05)|Lung NSC(43;0.00156)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)		all cancers(43;0.113)|GBM - Glioblastoma multiforme(44;0.174)|BRCA - Breast invasive adenocarcinoma(86;0.188)			GCAAGTTAGGGCTGAAGCCTG	0.562													46	1					0	0	0.00361006	0	0
FAM70B	348013	broad.mit.edu	37	13	114502317	114502317	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr13:114502317G>A	uc001vuh.2	+	5	375	c.348G>A	c.(346-348)CCG>CCA	p.P116P		NM_182614	NP_872420	Q8WV15	FA70B_HUMAN	family with sequence similarity 70, member B	116						integral to membrane					0	Lung NSC(43;0.00976)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_lung(25;0.123)|all_epithelial(44;0.133)	all cancers(43;0.181)			TCTAGGAACCGAGGCCCCTCA	0.547													8	30					0	0	0.000274275	0	0
OR11H12	440153	broad.mit.edu	37	14	19378112	19378112	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:19378112C>T	uc010tkp.1	+	1	519	c.519C>T	c.(517-519)ATC>ATT	p.I173I		NM_001013354	NP_001013372	B2RN74	O11HC_HUMAN	olfactory receptor, family 11, subfamily H,	173	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GGTTCCTGATCCCCATTGTTC	0.483													15	150					0	0	0.000878237	0	0
POTEG	404785	broad.mit.edu	37	14	19553578	19553578	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:19553578G>A	uc001vuz.1	+	1	214	c.162G>A	c.(160-162)ATG>ATA	p.M54I	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	54										ovary(1)	1						ATTCTGCTATGAAGACACTCA	0.617													18	436					0	0	0.00283554	0	0
OR4M1	441670	broad.mit.edu	37	14	20248664	20248664	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:20248664C>T	uc010tku.1	+	1	183	c.183C>T	c.(181-183)TTC>TTT	p.F61F		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	61	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTATGTATTTCCTGTTGGCTA	0.393													38	132					0	0	0.00128727	0	0
OR4M1	441670	broad.mit.edu	37	14	20249099	20249099	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:20249099C>T	uc010tku.1	+	1	618	c.618C>T	c.(616-618)ATC>ATT	p.I206I		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	206	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GTGGTCTGATCTCTGTGGTGT	0.473													29	117					0	0	0.00209593	0	0
OR4M1	441670	broad.mit.edu	37	14	20249337	20249337	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:20249337C>T	uc010tku.1	+	1	856	c.856C>T	c.(856-858)CCC>TCC	p.P286S		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTTACTTAATCCCATTATTTA	0.368													10	35					0	0	0.000442599	0	0
OR4K5	79317	broad.mit.edu	37	14	20389615	20389615	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:20389615C>A	uc010tkw.1	+	1	850	c.850C>A	c.(850-852)CCC>ACC	p.P284T		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	284	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CGTCCTAAACCCCATTATTTA	0.408													12	93					1.08611e-07	2.96825e-07	0.000978159	1	0
OR4N5	390437	broad.mit.edu	37	14	20612589	20612589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:20612589G>A	uc010tla.1	+	1	695	c.695G>A	c.(694-696)GGA>GAA	p.G232E		NM_001004724	NP_001004724	Q8IXE1	OR4N5_HUMAN	olfactory receptor, family 4, subfamily N,	232	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.84e-06)	GBM - Glioblastoma multiforme(265;0.0143)		TCCTCTGAAGGAAAGAGCAAG	0.493													42	21					0	0	0.00148497	0	0
TEP1	7011	broad.mit.edu	37	14	20871883	20871883	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:20871883G>A	uc001vxe.2	-	6	1233	c.1193C>T	c.(1192-1194)CCA>CTA	p.P398L	TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Intron	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	398	TROVE.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		GTGACTGACTGGAGAGCGGGG	0.617													23	52					0	0	0.00395357	0	0
RNASE9	390443	broad.mit.edu	37	14	21025085	21025085	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:21025085C>T	uc010aho.2	-	4	303	c.144G>A	c.(142-144)TTG>TTA	p.L48L	RNASE9_uc001vxq.3_Silent_p.L53L|RNASE9_uc010ahp.2_Silent_p.L53L|RNASE9_uc010ahq.2_Silent_p.L53L|RNASE9_uc010ahr.2_Silent_p.L53L|RNASE9_uc010ahs.2_Silent_p.L48L|RNASE9_uc010aht.2_Silent_p.L48L|RNASE9_uc010ahu.2_Silent_p.L48L	NM_001110357	NP_001103827	P60153	RNAS9_HUMAN	ribonuclease, RNase A family, 9 (non-active)	48						extracellular region	nucleic acid binding|pancreatic ribonuclease activity			ovary(2)	2	all_cancers(95;0.00238)		Epithelial(56;3.32e-06)|all cancers(55;2.46e-05)	GBM - Glioblastoma multiforme(265;0.0141)		AAAATTTTTCCAAACACTCTT	0.408													32	20					0	0	0.00178596	0	0
FLJ10357	55701	broad.mit.edu	37	14	21542517	21542517	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:21542517C>T	uc001vzp.2	+	3	657	c.628C>T	c.(628-630)CCA>TCA	p.P210S	FLJ10357_uc001vzn.1_Missense_Mutation_p.P210S|FLJ10357_uc001vzo.1_Intron|FLJ10357_uc010aij.2_RNA|FLJ10357_uc010tln.1_5'UTR	NM_018071	NP_060541	Q8TER5	ARH40_HUMAN	hypothetical protein LOC55701	210					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;5.79e-11)|Epithelial(56;8.35e-09)|all cancers(55;4.23e-08)	GBM - Glioblastoma multiforme(265;0.0197)		CTCTGGACCTCCAGGGCTTCC	0.617													7	12					0	0	0.00198382	0	0
OR5AU1	390445	broad.mit.edu	37	14	21623645	21623645	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:21623645G>A	uc010tlp.1	-	1	540	c.540C>T	c.(538-540)CCC>CCT	p.P180P		NM_001004731	NP_001004731	Q8NGC0	O5AU1_HUMAN	olfactory receptor, family 5, subfamily AU,	180	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(95;0.00238)		Epithelial(56;6.88e-07)|all cancers(55;6.02e-06)	GBM - Glioblastoma multiforme(265;0.0192)		AGTAGAGCAGGGGGTTACAAA	0.517													8	18					0	0	0.00307968	0	0
OR4E2	26686	broad.mit.edu	37	14	22134146	22134146	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:22134146C>T	uc010tmd.1	+	1	850	c.850C>T	c.(850-852)CCC>TCC	p.P284S		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	284	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		TTTGCTGAATCCCTTCATTTA	0.448													9	20					0	0	0.000274275	0	0
EFS	10278	broad.mit.edu	37	14	23826617	23826617	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:23826617C>T	uc001wjo.2	-	6	2112	c.1504G>A	c.(1504-1506)GCA>ACA	p.A502T	EFS_uc001wjp.2_Missense_Mutation_p.A409T|EFS_uc010tnm.1_Missense_Mutation_p.A333T	NM_005864	NP_005855	O43281	EFS_HUMAN	embryonal Fyn-associated substrate isoform 1	502					cell adhesion|intracellular signal transduction	cytoplasm	SH3 domain binding			large_intestine(1)	1	all_cancers(95;7.12e-06)			GBM - Glioblastoma multiforme(265;0.00649)		CTGACCTGTGCTCTCAGAGGG	0.657													7	24					0	0	0.00198382	0	0
MYH6	4624	broad.mit.edu	37	14	23855828	23855828	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:23855828G>A	uc001wjv.2	-	33	4722	c.4655C>T	c.(4654-4656)TCC>TTC	p.S1552F		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1552	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		GTGCTCCAGGGAGGCCTGGGA	0.632													24	63					0	0	0.00229938	0	0
MYH6	4624	broad.mit.edu	37	14	23863047	23863047	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:23863047G>A	uc001wjv.2	-	22	2823	c.2756C>T	c.(2755-2757)GCC>GTC	p.A919V		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	919	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		CTTTACTTTGGCCTCCAGCTG	0.527													28	78					0	0	0.000720815	0	0
MYH7	4625	broad.mit.edu	37	14	23887546	23887546	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:23887546C>T	uc001wjx.2	-	30	4148	c.4042G>A	c.(4042-4044)GAG>AAG	p.E1348K	MIR208B_hsa-mir-208b|MI0005570_5'Flank	NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1348	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GTCTCCTCCTCGTACTGCTCC	0.667													17	38					0	0	0.00400662	0	0
PSME2	5721	broad.mit.edu	37	14	24613200	24613200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:24613200G>A	uc001wmj.2	-	9	601	c.536C>T	c.(535-537)TCC>TTC	p.S179F	FAM158A_uc001wmi.2_5'Flank|PSME2_uc001wmk.2_Missense_Mutation_p.S102F|RNF31_uc001wml.1_5'Flank	NM_002818	NP_002809	Q9UL46	PSME2_HUMAN	proteasome activator subunit 2	179					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome activator complex					0				GBM - Glioblastoma multiforme(265;0.00839)		AGTCTCCTTGGAGGCCTTGGC	0.537													45	101					0	0	0.00361006	0	0
RIPK3	11035	broad.mit.edu	37	14	24806336	24806336	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:24806336G>A	uc001wpb.2	-	8	1441	c.1231C>T	c.(1231-1233)CCT>TCT	p.P411S	ADCY4_uc001wov.2_5'Flank|ADCY4_uc001wow.2_5'Flank|ADCY4_uc010toh.1_5'Flank|ADCY4_uc001wox.2_5'Flank|ADCY4_uc001woy.2_5'Flank|ADCY4_uc001woz.3_5'Flank|RIPK3_uc001wpa.2_Missense_Mutation_p.P211S|RIPK3_uc010alq.2_RNA|RIPK3_uc010toi.1_Missense_Mutation_p.P190S	NM_006871	NP_006862	Q9Y572	RIPK3_HUMAN	receptor-interacting serine-threonine kinase 3	411					apoptosis|induction of apoptosis by extracellular signals	cytoplasm	ATP binding|protein binding|transcription coactivator activity			central_nervous_system(2)|ovary(1)|lung(1)	4				GBM - Glioblastoma multiforme(265;0.0181)		GTTGAGGTAGGGCTGGGCATC	0.537													13	44					0	0	0.00244969	0	0
NFATC4	4776	broad.mit.edu	37	14	24839499	24839499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:24839499C>T	uc001wpc.2	+	2	1216	c.895C>T	c.(895-897)CCA>TCA	p.P299S	NFATC4_uc010tok.1_Missense_Mutation_p.P362S|NFATC4_uc010tol.1_Missense_Mutation_p.P362S|NFATC4_uc010alr.2_Missense_Mutation_p.P362S|NFATC4_uc010als.2_Missense_Mutation_p.P312S|NFATC4_uc010tom.1_Missense_Mutation_p.P312S|NFATC4_uc010ton.1_Missense_Mutation_p.P312S|NFATC4_uc010too.1_Missense_Mutation_p.P312S|NFATC4_uc010alt.2_Missense_Mutation_p.P331S|NFATC4_uc010top.1_Missense_Mutation_p.P331S|NFATC4_uc010toq.1_Missense_Mutation_p.P331S|NFATC4_uc010alu.2_Intron|NFATC4_uc010tor.1_Missense_Mutation_p.P299S|NFATC4_uc010tos.1_Missense_Mutation_p.P229S|NFATC4_uc010tot.1_Missense_Mutation_p.P287S|NFATC4_uc010tou.1_Missense_Mutation_p.P229S|NFATC4_uc010tov.1_Missense_Mutation_p.P287S|NFATC4_uc010tow.1_Missense_Mutation_p.P229S|NFATC4_uc010alv.2_Missense_Mutation_p.P287S|NFATC4_uc010tox.1_Missense_Mutation_p.P229S|NFATC4_uc001wpd.2_5'Flank|NFATC4_uc010toy.1_5'Flank|NFATC4_uc010toz.1_5'Flank	NM_004554	NP_004545	Q14934	NFAC4_HUMAN	nuclear factor of activated T-cells,	299	Pro-rich.				cell differentiation|inflammatory response|transcription from RNA polymerase II promoter	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(265;0.018)		TGAGCCACCTCCACCACCCCC	0.672													16	7					0	0	0.00400662	0	0
NYNRIN	57523	broad.mit.edu	37	14	24877605	24877605	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:24877605C>T	uc001wpf.3	+	3	1047	c.729C>T	c.(727-729)CCC>CCT	p.P243P		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	243					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						GTCCTGGACCCTTTGTGGACA	0.587													34	24					0	0	0.000953801	0	0
NYNRIN	57523	broad.mit.edu	37	14	24879333	24879333	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:24879333C>T	uc001wpf.3	+	4	2651	c.2333C>T	c.(2332-2334)CCC>CTC	p.P778L		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	778					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						CTGAATACACCCTTCGAGCTG	0.632													12	34					0	0	0.00136819	0	0
NYNRIN	57523	broad.mit.edu	37	14	24884964	24884964	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:24884964C>T	uc001wpf.3	+	9	4327	c.4009C>T	c.(4009-4011)CCC>TCC	p.P1337S		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1337					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						GCCCACCAGCCCCCCTGTCTC	0.612													37	95					0	0	0.00375469	0	0
STXBP6	29091	broad.mit.edu	37	14	25443984	25443984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:25443984G>A	uc001wpu.2	-	2	756	c.41C>T	c.(40-42)CCT>CTT	p.P14L	STXBP6_uc001wpv.2_Missense_Mutation_p.P14L|STXBP6_uc001wpw.2_Missense_Mutation_p.P14L|STXBP6_uc001wpx.1_RNA	NM_014178	NP_054897	Q8NFX7	STXB6_HUMAN	amisyn	14					vesicle-mediated transport	cytoplasm|integral to membrane					0				GBM - Glioblastoma multiforme(265;0.0296)		TTCATCAAGAGGTGCAAAAAT	0.408													5	21					0	0	0.000602214	0	0
NUBPL	80224	broad.mit.edu	37	14	32142590	32142591	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:32142590_32142591GG>AA	uc001wrk.3	+	5	467_468	c.412_413GG>AA	c.(412-414)GGT>AAT	p.G138N	NUBPL_uc010amj.2_RNA|NUBPL_uc010tpl.1_Missense_Mutation_p.G42N	NM_025152	NP_079428	Q8TB37	NUBPL_HUMAN	nucleotide binding protein-like	138					mitochondrial respiratory chain complex I assembly|mitochondrion morphogenesis	mitochondrion	4 iron, 4 sulfur cluster binding|ATP binding|metal ion binding				0	Hepatocellular(127;0.0604)|Prostate(35;0.15)|Breast(36;0.214)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.00714)|BRCA - Breast invasive adenocarcinoma(188;0.0677)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0102)		CTTGAATTATGGTATTGCTTGG	0.272													5	21					0	0	6.4e-05	0	0
BRMS1L	84312	broad.mit.edu	37	14	36300622	36300622	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:36300622A>G	uc001wtl.2	+	2	275	c.149A>G	c.(148-150)GAT>GGT	p.D50G	BRMS1L_uc010tpx.1_Missense_Mutation_p.D2G	NM_032352	NP_115728	Q5PSV4	BRM1L_HUMAN	breast cancer metastasis-suppressor 1-like	50					regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				skin(1)	1	Breast(36;0.137)|Hepatocellular(127;0.158)		Lung(8;1.7e-07)|LUAD - Lung adenocarcinoma(9;3e-07)|Epithelial(34;0.00467)|all cancers(34;0.0157)|BRCA - Breast invasive adenocarcinoma(188;0.158)	GBM - Glioblastoma multiforme(112;0.0333)		ACAGAAATGGATGATGAAGAC	0.284													21	57					0	0	0.00188189	0	0
FBXO33	254170	broad.mit.edu	37	14	39868916	39868916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:39868916G>A	uc001wvk.2	-	4	1810	c.1472C>T	c.(1471-1473)ACC>ATC	p.T491I		NM_203301	NP_976046	Q7Z6M2	FBX33_HUMAN	F-box protein 33	491											0	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00121)|Epithelial(34;0.169)	GBM - Glioblastoma multiforme(112;0.0425)		GCTTTCTTCGGTGACTTCAAG	0.483													9	18					0	0	0.000442599	0	0
MDGA2	161357	broad.mit.edu	37	14	47314980	47314980	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:47314980A>G	uc001wwj.3	-	16	2967	c.2771T>C	c.(2770-2772)CTA>CCA	p.L924P	MDGA2_uc001wwh.3_Missense_Mutation_p.L126P|MDGA2_uc001wwi.3_Missense_Mutation_p.L695P	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	924					spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						CTTAGTTGCTAGGTCTTGTTT	0.308													9	57					0	0	0.000442599	0	0
KIAA0586	9786	broad.mit.edu	37	14	58949281	58949281	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:58949281C>T	uc001xdv.3	+	20	3040	c.2767C>T	c.(2767-2769)CCT>TCT	p.P923S	KIAA0586_uc010trr.1_Missense_Mutation_p.P1040S|KIAA0586_uc001xdt.3_Missense_Mutation_p.P955S|KIAA0586_uc001xdu.3_Missense_Mutation_p.P984S|KIAA0586_uc010trs.1_Missense_Mutation_p.P914S|KIAA0586_uc010trt.1_Missense_Mutation_p.P859S|KIAA0586_uc010tru.1_Missense_Mutation_p.P859S	NM_014749	NP_055564	E9PGW8	E9PGW8_HUMAN	talpid3 protein	923										ovary(1)	1						TGCTGGTGTTCCTGTGAACTC	0.423													9	46					0	0	0.000274275	0	0
DHRS7	51635	broad.mit.edu	37	14	60620752	60620752	+	Silent	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:60620752A>G	uc001xes.2	-	3	502	c.318T>C	c.(316-318)CTT>CTC	p.L106L	C14orf135_uc001xeq.2_Intron|DHRS7_uc001xet.2_Silent_p.L56L|DHRS7_uc001xeu.2_Silent_p.L106L	NM_016029	NP_057113	Q9Y394	DHRS7_HUMAN	dehydrogenase/reductase (SDR family) member 7	106							binding|oxidoreductase activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.121)		GGGGCAAAACAAGTATATCTT	0.398													35	26					0	0	0.00195071	0	0
C14orf39	317761	broad.mit.edu	37	14	60903654	60903654	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:60903654G>A	uc001xez.3	-	18	1783	c.1673C>T	c.(1672-1674)TCA>TTA	p.S558L	C14orf39_uc010apo.2_Missense_Mutation_p.S269L	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	558										ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		CTGTCCAAATGAAAATGGAAA	0.338													65	209					0	0	0.00361006	0	0
SYT16	83851	broad.mit.edu	37	14	62463197	62463197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:62463197C>T	uc001xfu.1	+	1	657	c.460C>T	c.(460-462)CTT>TTT	p.L154F	SYT16_uc010tsd.1_Missense_Mutation_p.L154F	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	154										central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		AAGAAGTGGCCTTCAACATGG	0.478													16	52					0	0	0.00400662	0	0
KCNH5	27133	broad.mit.edu	37	14	63447746	63447746	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:63447746G>A	uc001xfx.2	-	6	837	c.786C>T	c.(784-786)ATC>ATT	p.I262I	KCNH5_uc001xfy.2_Silent_p.I262I|KCNH5_uc001xfz.1_Silent_p.I204I|KCNH5_uc001xga.2_Silent_p.I204I	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	262	Helical; Name=Segment S2; (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		AATTTAAAACGATGTCAACCA	0.423													15	50					0	0	0.00316338	0	0
SYNE2	23224	broad.mit.edu	37	14	64461881	64461881	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:64461881C>T	uc001xgm.2	+	23	3131	c.2901C>T	c.(2899-2901)ATC>ATT	p.I967I	SYNE2_uc001xgl.2_Silent_p.I967I	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	967	Potential.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		AGAAACTTATCCGTAGAGGAA	0.294													9	48					0	0	0.000442599	0	0
Unknown	0	broad.mit.edu	37	14	66479968	66479968	+	Silent	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:66479968T>C	uc001xit.2	-	1	665	c.540A>G	c.(538-540)CAA>CAG	p.Q180Q						SubName: Full=Nuclease sensitive element binding protein-1;																		AGGGCCGGCGTTGTTGGGCCT	0.572													18	7					0	0	0.00229938	0	0
GPHN	10243	broad.mit.edu	37	14	67525457	67525457	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:67525457C>T	uc001xiy.2	+	10	2120	c.999C>T	c.(997-999)GTC>GTT	p.V333V	GPHN_uc001xiw.2_Silent_p.V348V|GPHN_uc001xix.2_Silent_p.V366V|GPHN_uc010tss.1_Silent_p.V379V|GPHN_uc010tst.1_Silent_p.V302V|GPHN_uc010tsu.1_Silent_p.V256V	NM_001024218	NP_001019389	Q9NQX3	GEPH_HUMAN	gephyrin isoform 2	333	MPT adenylyltransferase.				Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cell junction|cytoplasm|cytoskeleton|postsynaptic membrane	ATP binding|metal ion binding|nucleotidyltransferase activity			ovary(2)	2		all_cancers(7;0.0476)|all_hematologic(31;0.0116)		Epithelial(1;1.73e-08)|all cancers(60;3.15e-07)|OV - Ovarian serous cystadenocarcinoma(108;0.000275)|BRCA - Breast invasive adenocarcinoma(234;0.00323)|Colorectal(3;0.0938)|KIRC - Kidney renal clear cell carcinoma(182;0.184)		TTATCACAGTCCTGGAGATGA	0.418			T	MLL	AL								39	127					0	0	0.00128727	0	0
RDH11	51109	broad.mit.edu	37	14	68156954	68156954	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:68156954G>A	uc001xjv.3	-	5	729	c.639C>T	c.(637-639)ACC>ACT	p.T213T	RDH11_uc001xjw.3_Silent_p.T200T|RDH11_uc001xjx.3_Intron	NM_016026	NP_057110	Q8TC12	RDH11_HUMAN	retinol dehydrogenase 11	213	Cytoplasmic (Potential).				retinol metabolic process|steroid metabolic process	endoplasmic reticulum membrane|integral to membrane	binding|NADP-retinol dehydrogenase activity|retinol dehydrogenase activity			ovary(1)	1				all cancers(60;0.00047)|OV - Ovarian serous cystadenocarcinoma(108;0.00206)|BRCA - Breast invasive adenocarcinoma(234;0.00924)	Vitamin A(DB00162)	CCAGTTCCTGGGTGAAGAGGA	0.512													18	56					0	0	0.00278032	0	0
ZFYVE26	23503	broad.mit.edu	37	14	68265132	68265132	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:68265132G>A	uc001xka.2	-	11	1986	c.1847C>T	c.(1846-1848)CCA>CTA	p.P616L	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkc.3_Missense_Mutation_p.P616L|ZFYVE26_uc010tta.1_Missense_Mutation_p.P616L	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	616					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		GCTCTCTGATGGGGACCTCAA	0.537													17	43					0	0	0.000566183	0	0
SMOC1	64093	broad.mit.edu	37	14	70461188	70461188	+	Silent	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:70461188A>C	uc001xls.1	+	7	908	c.655A>C	c.(655-657)AGA>CGA	p.R219R	SMOC1_uc001xlt.1_Silent_p.R219R	NM_022137	NP_071420	Q9H4F8	SMOC1_HUMAN	secreted modular calcium-binding protein 1	219					cell differentiation|eye development|limb development|regulation of osteoblast differentiation|signal transduction	basement membrane	calcium ion binding			upper_aerodigestive_tract(1)|pancreas(1)	2				all cancers(60;0.00417)|BRCA - Breast invasive adenocarcinoma(234;0.0119)|OV - Ovarian serous cystadenocarcinoma(108;0.028)		CACCAACATAAGAAATTCAGG	0.348													43	118					0	0	0.00195071	0	0
SLC8A3	6547	broad.mit.edu	37	14	70634624	70634624	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:70634624C>T	uc001xly.2	-	2	1270	c.516G>A	c.(514-516)GGG>GGA	p.G172G	SLC8A3_uc001xlw.2_Silent_p.G172G|SLC8A3_uc001xlx.2_Silent_p.G172G|SLC8A3_uc001xlz.2_Silent_p.G172G|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	172	Alpha-1.|Helical; (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		AGGCTGCACTCCCTACAATGG	0.493													9	51					0	0	0.000673444	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72054795	72054795	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:72054795C>T	uc001xms.2	+	2	554	c.206C>T	c.(205-207)CCC>CTC	p.P69L	SIPA1L1_uc001xmt.2_Missense_Mutation_p.P69L|SIPA1L1_uc001xmu.2_Missense_Mutation_p.P69L|SIPA1L1_uc001xmv.2_Missense_Mutation_p.P69L	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	69					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		ACCTCAACCCCCGGAGTCCCA	0.507													32	86					0	0	0.00209593	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72137929	72137929	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:72137929C>T	uc001xms.2	+	8	2697	c.2349C>T	c.(2347-2349)TTC>TTT	p.F783F	SIPA1L1_uc001xmt.2_Silent_p.F783F|SIPA1L1_uc001xmu.2_Silent_p.F783F|SIPA1L1_uc001xmv.2_Silent_p.F783F|SIPA1L1_uc010ttm.1_Silent_p.F258F	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	783	Rap-GAP.				actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		TCAGGGACTTCCTTTTGGCGA	0.498													96	90					0	0	0.00361006	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72152246	72152246	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:72152246C>T	uc001xms.2	+	10	3620	c.3272C>T	c.(3271-3273)TCG>TTG	p.S1091L	SIPA1L1_uc001xmt.2_Missense_Mutation_p.S1091L|SIPA1L1_uc001xmu.2_Missense_Mutation_p.S1091L|SIPA1L1_uc001xmv.2_Missense_Mutation_p.S1091L|SIPA1L1_uc010ttm.1_Missense_Mutation_p.S566L	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1091					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		CCCATGACCTCGCGGCTGAAT	0.562													10	35					0	0	0.000442599	0	0
RGS6	9628	broad.mit.edu	37	14	73029132	73029132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:73029132C>T	uc001xna.3	+	17	1899	c.1376C>T	c.(1375-1377)TCG>TTG	p.S459L	RGS6_uc010ttn.1_Missense_Mutation_p.S477L|RGS6_uc001xmx.3_Missense_Mutation_p.S459L|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Missense_Mutation_p.S477L|RGS6_uc001xmz.1_Intron	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	459					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		CAGGGAAAGTCGCTGGCGGGC	0.647													9	44					0	0	0.000673444	0	0
PAPLN	89932	broad.mit.edu	37	14	73731413	73731413	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:73731413C>T	uc010ttx.1	+	21	3267	c.3104C>T	c.(3103-3105)TCA>TTA	p.S1035L	PAPLN_uc001xnw.3_Missense_Mutation_p.S1008L|PAPLN_uc010arl.2_RNA|PAPLN_uc010ttw.1_RNA|PAPLN_uc010tty.1_Missense_Mutation_p.S1019L|PAPLN_uc010arm.2_Missense_Mutation_p.S234L|PAPLN_uc010arn.2_Missense_Mutation_p.S235L	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	1035	Ig-like C2-type 2.					proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		ATCCCCTCTTCACACCCACAG	0.657													29	86					0	0	0.0024448	0	0
VSX2	338917	broad.mit.edu	37	14	74727351	74727351	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:74727351G>A	uc001xpq.2	+	5	905	c.815G>A	c.(814-816)GGG>GAG	p.G272E		NM_182894	NP_878314	P58304	VSX2_HUMAN	visual system homeobox 2	272					multicellular organismal development|response to stimulus|visual perception	nucleolus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00154)		AAGCCCGAGGGGGAACGCCAG	0.612													10	22					0	0	0.000978159	0	0
LTBP2	4053	broad.mit.edu	37	14	74967682	74967682	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:74967682C>T	uc001xqa.2	-	36	5758	c.5371G>A	c.(5371-5373)GGT>AGT	p.G1791S		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	1791	EGF-like 20; calcium-binding (Potential).				protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		TCGCAGTAACCATGGACACAG	0.587											OREG0022805	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	20					0	0	0.000673444	0	0
LTBP2	4053	broad.mit.edu	37	14	74978063	74978063	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:74978063G>A	uc001xqa.2	-	19	3300	c.2913C>T	c.(2911-2913)ATC>ATT	p.I971I		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	971	EGF-like 7; calcium-binding (Potential).|Cys-rich.				protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		GGCATTCGTTGATATCTGCAA	0.572													25	72					0	0	0.001512	0	0
FOS	2353	broad.mit.edu	37	14	75747346	75747346	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:75747346G>A	uc001xrn.2	+	3	682	c.477G>A	c.(475-477)AGG>AGA	p.R159R	FOS_uc010tva.1_Intron|FOS_uc010asi.2_Silent_p.R45R|FOS_uc001xro.2_Silent_p.R11R	NM_005252	NP_005243	P01100	FOS_HUMAN	v-fos FBJ murine osteosarcoma viral oncogene	159	Basic motif.				cellular response to reactive oxygen species|DNA methylation|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|SMAD protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter|transforming growth factor beta receptor signaling pathway		protein dimerization activity|R-SMAD binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			lung(2)|ovary(1)	3		all_lung(585;0.0138)|all_epithelial(191;0.0263)|all_neural(303;0.112)		BRCA - Breast invasive adenocarcinoma(234;0.0117)		ACCGGAGGAGGGAGCTGACTG	0.453													9	36					0	0	0.000442599	0	0
VIPAR	63894	broad.mit.edu	37	14	77919703	77919703	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:77919703G>A	uc001xtt.1	-	4	473	c.135C>T	c.(133-135)TTC>TTT	p.F45F	VIPAR_uc001xtu.1_Silent_p.F45F|VIPAR_uc010tvj.1_Silent_p.F45F|VIPAR_uc001xtv.1_Silent_p.F45F	NM_022067	NP_071350	Q9H9C1	VIPAR_HUMAN	hypothetical protein LOC63894	45					endosome to lysosome transport|intracellular protein transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	early endosome|late endosome|recycling endosome	protein binding			central_nervous_system(1)	1						CATCATCCACGAAGTCTCGGA	0.537													94	285					0	0	0.00361006	0	0
NRXN3	9369	broad.mit.edu	37	14	79181202	79181202	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:79181202C>T	uc001xun.2	+	5	1136	c.645C>T	c.(643-645)AAC>AAT	p.N215N	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Silent_p.N349N	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	588	Extracellular (Potential).|Laminin G-like 3.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		TGCCGGAGAACCGTGCTGGCC	0.592													38	22					0	0	0.00375469	0	0
STON2	85439	broad.mit.edu	37	14	81862503	81862503	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:81862503G>A	uc010tvu.1	-	2	309	c.108C>T	c.(106-108)CTC>CTT	p.L36L	STON2_uc001xvk.1_Silent_p.L36L|STON2_uc010atc.1_Silent_p.L36L	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	36					endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		ACAGTCCTGGGAGGTGCTCTT	0.572													13	34					0	0	0.00316338	0	0
KCNK10	54207	broad.mit.edu	37	14	88652155	88652155	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:88652155G>A	uc001xwo.2	-	7	1798	c.1341C>T	c.(1339-1341)TTC>TTT	p.F447F	KCNK10_uc001xwm.2_Silent_p.F452F|KCNK10_uc001xwn.2_Silent_p.F452F	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	447	Cytoplasmic (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						AGGTGGACCCGAACTTGTTGA	0.542													30	123					0	0	0.00209593	0	0
KCNK10	54207	broad.mit.edu	37	14	88652317	88652317	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:88652317G>A	uc001xwo.2	-	7	1636	c.1179C>T	c.(1177-1179)TCC>TCT	p.S393S	KCNK10_uc001xwm.2_Silent_p.S398S|KCNK10_uc001xwn.2_Silent_p.S398S	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	393	Cytoplasmic (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						GCTTCTCGGGGGACAGCATGT	0.662													23	74					0	0	0.000720815	0	0
CCDC88C	440193	broad.mit.edu	37	14	91763744	91763744	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:91763744G>A	uc010aty.2	-	22	3970	c.3871C>T	c.(3871-3873)CTG>TTG	p.L1291L		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1291	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				TTGAGCTCCAGCTGCGCGTTG	0.602													13	16					0	0	0.00185496	0	0
CATSPERB	79820	broad.mit.edu	37	14	92088079	92088079	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:92088079C>T	uc001xzs.1	-	19	2273	c.2133G>A	c.(2131-2133)TGG>TGA	p.W711*	CATSPERB_uc010aub.1_Nonsense_Mutation_p.W233*	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	711					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				AATATATTTTCCATGTTCGTC	0.368													23	85					0	0	0.00278032	0	0
FBLN5	10516	broad.mit.edu	37	14	92343867	92343867	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:92343867G>A	uc001xzx.3	-	10	1622	c.1149C>T	c.(1147-1149)ATC>ATT	p.I383I	FBLN5_uc010aud.2_Silent_p.I388I|FBLN5_uc010aue.2_Silent_p.I424I|FBLN5_uc001xzw.2_5'Flank	NM_006329	NP_006320	Q9UBX5	FBLN5_HUMAN	fibulin 5 precursor	383					cell-matrix adhesion|elastic fiber assembly|protein localization at cell surface|regulation of removal of superoxide radicals	extracellular space|proteinaceous extracellular matrix|soluble fraction	calcium ion binding|integrin binding|protein C-terminus binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		all_cancers(154;0.0722)				TCCCAGATTTGATCTGGAAAA	0.552													18	56					0	0	0.000958276	0	0
FBLN5	10516	broad.mit.edu	37	14	92344001	92344001	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:92344001G>A	uc001xzx.3	-	10	1488	c.1015C>T	c.(1015-1017)CCT>TCT	p.P339S	FBLN5_uc010aud.2_Missense_Mutation_p.P344S|FBLN5_uc010aue.2_Missense_Mutation_p.P380S|FBLN5_uc001xzw.2_5'Flank	NM_006329	NP_006320	Q9UBX5	FBLN5_HUMAN	fibulin 5 precursor	339					cell-matrix adhesion|elastic fiber assembly|protein localization at cell surface|regulation of removal of superoxide radicals	extracellular space|proteinaceous extracellular matrix|soluble fraction	calcium ion binding|integrin binding|protein C-terminus binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		all_cancers(154;0.0722)				CTGCAGCCAGGGTTCTCAGCA	0.537													39	48					0	0	0.00361006	0	0
RIN3	79890	broad.mit.edu	37	14	93154369	93154369	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:93154369G>A	uc001yap.2	+	10	2882	c.2730G>A	c.(2728-2730)GCG>GCA	p.A910A	RIN3_uc010auk.2_Silent_p.A572A|RIN3_uc001yaq.2_Silent_p.A835A	NM_024832	NP_079108	Q8TB24	RIN3_HUMAN	Ras and Rab interactor 3	910	Ras-associating.				endocytosis|signal transduction	cytoplasmic membrane-bounded vesicle|early endosome	GTPase activator activity|Ras GTPase binding			lung(2)|ovary(1)	3		all_cancers(154;0.0701)				CGCAGTGCGCGGAGAAGTTCG	0.721													5	10					0	0	0.000602214	0	0
RIN3	79890	broad.mit.edu	37	14	93154591	93154591	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:93154591C>T	uc001yap.2	+	10	3104	c.2952C>T	c.(2950-2952)TTC>TTT	p.F984F	RIN3_uc010auk.2_Silent_p.F646F|RIN3_uc001yaq.2_Silent_p.F909F	NM_024832	NP_079108	Q8TB24	RIN3_HUMAN	Ras and Rab interactor 3	984					endocytosis|signal transduction	cytoplasmic membrane-bounded vesicle|early endosome	GTPase activator activity|Ras GTPase binding			lung(2)|ovary(1)	3		all_cancers(154;0.0701)				AGCCCAACTTCCTGTGAGGCC	0.751													11	5					0	0	0.000978159	0	0
DDX24	57062	broad.mit.edu	37	14	94545680	94545680	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:94545680G>A	uc001ycj.2	-	2	508	c.409C>T	c.(409-411)CCG>TCG	p.P137S	DDX24_uc010twq.1_Missense_Mutation_p.P94S|DDX24_uc010twr.1_Intron|IFI27L1_uc001ycl.2_5'Flank|IFI27L1_uc001yck.2_5'Flank	NM_020414	NP_065147	Q9GZR7	DDX24_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	137					RNA metabolic process	cytoplasm|nucleolus|nucleolus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|skin(1)	4		all_cancers(154;0.12)		Epithelial(152;0.114)|all cancers(159;0.19)|COAD - Colon adenocarcinoma(157;0.207)		CCAGCCTCCGGATCATCACAA	0.453													31	103					0	0	0.00178596	0	0
SERPINA1	5265	broad.mit.edu	37	14	94844884	94844884	+	Missense_Mutation	SNP	C	T	T	rs121912712		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:94844884C>T	uc001ycx.3	-	5	1420	c.1159G>A	c.(1159-1161)GAG>AAG	p.E387K	SERPINA1_uc001ycw.3_RNA|SERPINA1_uc010auw.2_Missense_Mutation_p.E387K|SERPINA1_uc010aux.2_Missense_Mutation_p.E387K|SERPINA1_uc001ycy.3_Missense_Mutation_p.E387K|SERPINA1_uc010auy.2_Missense_Mutation_p.E387K|SERPINA1_uc001ycz.3_Missense_Mutation_p.E387K|SERPINA1_uc010auz.2_Missense_Mutation_p.E387K|SERPINA1_uc010ava.2_Missense_Mutation_p.E387K|SERPINA1_uc001ydb.3_Missense_Mutation_p.E387K|SERPINA1_uc010avb.2_Missense_Mutation_p.E387K|SERPINA1_uc001ydc.3_Missense_Mutation_p.E387K	NM_000295	NP_000286	P01009	A1AT_HUMAN	serine proteinase inhibitor, clade A, member 1	387	RCL.		E -> K (in Christchurch).		acute-phase response|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen|proteinaceous extracellular matrix	protease binding|serine-type endopeptidase inhibitor activity			skin(1)	1		all_cancers(154;0.0649)|all_epithelial(191;0.223)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)	Alpha-1-proteinase inhibitor(DB00058)	AACTTGACCTCGGGGGGGATA	0.488									Alpha-1-Antitrypsin_Deficiency				20	63					0	0	0.00121646	0	0
SERPINA5	5104	broad.mit.edu	37	14	95053903	95053903	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:95053903C>T	uc001ydm.2	+	3	414	c.204C>T	c.(202-204)TCC>TCT	p.S68S	SERPINA5_uc010ave.2_Silent_p.S68S|SERPINA5_uc001ydn.1_Silent_p.S68S	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	68					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	TCTTCTTCTCCCCTGTGAGCA	0.607													9	43					0	0	0.000274275	0	0
TCL6	27004	broad.mit.edu	37	14	96136862	96136862	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:96136862C>T	uc001yeq.2	+	6	1811	c.342C>T	c.(340-342)TTC>TTT	p.F114F	TCL6_uc001yep.1_RNA|TCL6_uc001yes.2_3'UTR|TCL6_uc001yet.1_Silent_p.F56F|TCL6_uc001yeu.2_3'UTR|TCL6_uc001yev.2_Intron|TCL1B_uc001yew.2_RNA|TCL1B_uc001yex.2_RNA|TCL1B_uc010avj.2_RNA|TCL6_uc010avk.1_RNA	NM_020554	NP_065579			SubName: Full=T-cell leukemia/lymphoma 6 ORF163;												0		all_cancers(154;0.103)		Epithelial(152;0.0655)|all cancers(159;0.149)|BRCA - Breast invasive adenocarcinoma(234;0.206)|COAD - Colon adenocarcinoma(157;0.207)		GTCCTTTTTTCCTTCCTTCTC	0.502			T	TRA@	T-ALL								10	32					0	0	0.000442599	0	0
TCL1B	9623	broad.mit.edu	37	14	96152929	96152929	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:96152929C>T	uc001yez.2	+	1	167	c.125C>T	c.(124-126)TCG>TTG	p.S42L	TCL1B_uc001yew.2_Intron|TCL1B_uc001yex.2_Intron|TCL1B_uc010avj.2_Intron|TCL1B_uc001yfa.2_Missense_Mutation_p.S42L	NM_004918	NP_004909	O95988	TCL1B_HUMAN	T-cell leukemia/lymphoma 1B	42										ovary(1)	1		all_cancers(154;0.103)		COAD - Colon adenocarcinoma(157;0.205)|Epithelial(152;0.248)		TTCAATCCCTCGCGTAGGGAA	0.672													15	36					0	0	0.00244969	0	0
BDKRB2	624	broad.mit.edu	37	14	96707157	96707157	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:96707157C>T	uc010avm.1	+	3	688	c.492C>T	c.(490-492)TCC>TCT	p.S164S	BDKRB2_uc010avl.1_3'UTR|BDKRB2_uc010twu.1_Silent_p.S137S|BDKRB2_uc001yfg.2_Silent_p.S164S	NM_000623	NP_000614	P30411	BKRB2_HUMAN	bradykinin receptor B2	164	Cytoplasmic (Potential).				arachidonic acid secretion|elevation of cytosolic calcium ion concentration|transmembrane receptor protein tyrosine kinase signaling pathway	endosome|integral to plasma membrane	bradykinin receptor activity|phosphatidylinositol phospholipase C activity|protease binding|protein heterodimerization activity|type 1 angiotensin receptor binding			ovary(3)|breast(1)|kidney(1)	5		all_cancers(154;0.0678)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.226)		AAACCATGTCCATGGGCCGGA	0.592													36	115					0	0	0.000953801	0	0
BDKRB2	624	broad.mit.edu	37	14	96707829	96707829	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:96707829G>A	uc010avm.1	+	3	1360	c.1164G>A	c.(1162-1164)GGG>GGA	p.G388G	BDKRB2_uc010avl.1_3'UTR|BDKRB2_uc010twu.1_Silent_p.G361G|BDKRB2_uc001yfg.2_Silent_p.G388G	NM_000623	NP_000614	P30411	BKRB2_HUMAN	bradykinin receptor B2	388	Cytoplasmic (Potential).				arachidonic acid secretion|elevation of cytosolic calcium ion concentration|transmembrane receptor protein tyrosine kinase signaling pathway	endosome|integral to plasma membrane	bradykinin receptor activity|phosphatidylinositol phospholipase C activity|protease binding|protein heterodimerization activity|type 1 angiotensin receptor binding	p.G388E(1)		ovary(3)|breast(1)|kidney(1)	5		all_cancers(154;0.0678)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.226)		ACTGGGCAGGGAGCAGACAGT	0.552													14	35					0	0	0.00316338	0	0
WARS	7453	broad.mit.edu	37	14	100820169	100820169	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:100820169G>A	uc001yhf.1	-	5	664	c.580C>T	c.(580-582)CAG>TAG	p.Q194*	WARS_uc001yhe.1_5'UTR|WARS_uc001yhg.1_Nonsense_Mutation_p.Q194*|WARS_uc001yhh.1_Nonsense_Mutation_p.Q194*|WARS_uc001yhi.1_Nonsense_Mutation_p.Q153*|WARS_uc001yhj.1_Nonsense_Mutation_p.Q153*|WARS_uc001yhk.1_Nonsense_Mutation_p.Q153*|WARS_uc001yhl.1_Nonsense_Mutation_p.Q194*	NM_173701	NP_776049	P23381	SYWC_HUMAN	tryptophanyl-tRNA synthetase isoform a	194					angiogenesis|negative regulation of cell proliferation|regulation of angiogenesis|tryptophanyl-tRNA aminoacylation	cytosol|soluble fraction	ATP binding|protein binding|tryptophan-tRNA ligase activity			breast(1)	1		all_cancers(154;0.00223)|all_lung(585;2.48e-06)|all_epithelial(191;0.000564)|Melanoma(154;0.152)			L-Tryptophan(DB00150)	TCCGTCATCTGGATGACCAAG	0.537													28	69					0	0	0.00178596	0	0
MIR487B	664616	broad.mit.edu	37	14	101512826	101512826	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:101512826C>T	hsa-mir-487b|MI0003530	+			c.35C>T			MIR539_hsa-mir-539|MI0003514_5'Flank|MIR889_hsa-mir-889|MI0005540_5'Flank|MIR544_hsa-mir-544|MI0003515_5'Flank																	0						CTGTCCTGTTCGTTTTGCTCA	0.363													16	68					0	0	0.00188189	0	0
TECPR2	9895	broad.mit.edu	37	14	102843242	102843242	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:102843242C>T	uc001ylw.1	+	2	332	c.184C>T	c.(184-186)CGG>TGG	p.R62W	TECPR2_uc010txw.1_Missense_Mutation_p.R62W|TECPR2_uc010awl.2_Missense_Mutation_p.R62W|TECPR2_uc010txx.1_Intron	NM_014844	NP_055659	O15040	TCPR2_HUMAN	tectonin beta-propeller repeat containing 2	62	WD 1.						protein binding			lung(1)|central_nervous_system(1)|skin(1)	3						TCTGTACTGCCGGCACCTCAA	0.557													8	32					0	0	0.000442599	0	0
ADSSL1	122622	broad.mit.edu	37	14	105207213	105207213	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:105207213C>T	uc001ypd.2	+	7	696	c.622C>T	c.(622-624)CCC>TCC	p.P208S	INF2_uc010tyi.1_Intron|ADSSL1_uc001ype.2_Missense_Mutation_p.P251S|ADSSL1_uc001ypf.2_RNA	NM_152328	NP_689541	Q8N142	PURA1_HUMAN	adenylosuccinate synthase like 1 isoform 2	208					AMP biosynthetic process|immune system process|purine base metabolic process	cytosol	adenylosuccinate synthase activity|GTP binding|magnesium ion binding|phosphate binding			ovary(1)|central_nervous_system(1)	2		all_cancers(154;0.0896)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00153)|OV - Ovarian serous cystadenocarcinoma(23;0.0148)|Epithelial(46;0.0396)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.18)	L-Aspartic Acid(DB00128)	GTCGATGTTCCCCACCCTGGA	0.597													53	155					0	0	0.00361006	0	0
AHNAK2	113146	broad.mit.edu	37	14	105419725	105419725	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:105419725G>A	uc010axc.1	-	7	2183	c.2063C>T	c.(2062-2064)TCA>TTA	p.S688L	AHNAK2_uc001ypx.2_Missense_Mutation_p.S588L	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	688						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GCCTGGGGCTGACGCCCCGAA	0.542													192	70					0	0	0.00361006	0	0
AHNAK2	113146	broad.mit.edu	37	14	105420946	105420946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:105420946G>A	uc010axc.1	-	7	962	c.842C>T	c.(841-843)TCG>TTG	p.S281L	AHNAK2_uc001ypx.2_Missense_Mutation_p.S181L	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	281						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GGCCTCTGACGAGCTGTGTGA	0.612													24	6					0	0	0.00395357	0	0
NUDT14	256281	broad.mit.edu	37	14	105639473	105639473	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:105639473G>A	uc010tyn.1	-	5	668	c.554C>T	c.(553-555)CCC>CTC	p.P185L	NUDT14_uc001yqi.2_RNA	NM_177533	NP_803877	O95848	NUD14_HUMAN	nudix-type motif 14	185	Nudix hydrolase.					cytoplasm	metal ion binding|protein binding|UDP-sugar diphosphatase activity			skin(1)	1		all_cancers(154;0.0336)|all_epithelial(191;0.0729)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00989)|all cancers(16;0.0114)|Epithelial(46;0.0272)	Epithelial(152;0.047)|OV - Ovarian serous cystadenocarcinoma(161;0.148)|all cancers(159;0.208)		GCCTTCCAGGGGCAGGTGCAC	0.627										HNSCC(42;0.11)			6	39					0	0	0.00198382	0	0
ADAM6	8755	broad.mit.edu	37	14	106173490	106173490	+	RNA	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:106173490G>A	uc010tyt.1	-	3633		c.60408C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001ysc.2_5'Flank					Parts of antibodies, mostly variable regions.												0						TCAGGGGTGGGGACAGGCGGG	0.617													18	31					0	0	0.001512	0	0
ADAM6	8755	broad.mit.edu	37	14	106320563	106320563	+	RNA	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:106320563G>A	uc010tyt.1	-	3601		c.56411C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						GGCCTCATGGGCCACCACGCA	0.632													17	39					0	0	0.000566183	0	0
ADAM6	8755	broad.mit.edu	37	14	106320691	106320691	+	RNA	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:106320691G>A	uc010tyt.1	-	3601		c.56283C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						ACTTCTCCGGGGACAAGGGCT	0.647													6	23					0	0	0.00116845	0	0
ADAM6	8755	broad.mit.edu	37	14	106385436	106385436	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:106385436G>A	uc010tyt.1	-	2554		c.44434_splice	c.e2554-1		KIAA0125_uc001ysq.2_Intron|KIAA0125_uc001ysr.2_Intron|KIAA0125_uc001yss.2_Intron|KIAA0125_uc001yst.2_Intron					Parts of antibodies, mostly variable regions.												0						GGGGCCTCCTGGATGGGGGCT	0.632													8	28					0	0	0.000442599	0	0
ADAM6	8755	broad.mit.edu	37	14	106405795	106405795	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:106405795C>T	uc010tyt.1	-	2358		c.42269G>A								Parts of antibodies, mostly variable regions.												0						TGGGGACTGCCTGATCCAGTT	0.527													25	95					0	0	0.000878237	0	0
ADAM6	8755	broad.mit.edu	37	14	106453086	106453086	+	RNA	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:106453086G>A	uc010tyt.1	-	1974		c.37753C>T								Parts of antibodies, mostly variable regions.												0						CCAAGAAGAGGATCCTCCAGG	0.542													8	24					0	0	0.000673444	0	0
ADAM6	8755	broad.mit.edu	37	14	106539144	106539144	+	RNA	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:106539144T>C	uc010tyt.1	-	1519		c.31549A>G								Parts of antibodies, mostly variable regions.												0						TAGGCTGTGCTTATGGAGGTG	0.527													140	50					0	0	0.00361006	0	0
ADAM6	8755	broad.mit.edu	37	14	106691916	106691916	+	RNA	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:106691916G>A	uc010tyt.1	-	754		c.20447C>T								Parts of antibodies, mostly variable regions.												0						AGAGTCTCAGGGACCCCCCAG	0.587													21	58					0	0	0.00229938	0	0
ADAM6	8755	broad.mit.edu	37	14	106899310	106899310	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:106899310C>T	uc010tyt.1	-	266		c.10846G>A			uc010tyu.1_Intron					Parts of antibodies, mostly variable regions.												0						ACCAAGCCTCCCCCAGACTCC	0.562													20	67					0	0	0.00229938	0	0
ADAM6	8755	broad.mit.edu	37	14	107013112	107013112	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:107013112C>T	uc010tyt.1	-	169		c.7945G>A								Parts of antibodies, mostly variable regions.												0						CCAGCCCCTTCCCTGGAGCCT	0.532													17	55					0	0	0.000566183	0	0
ADAM6	8755	broad.mit.edu	37	14	107062360	107062360	+	RNA	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:107062360A>G	uc010tyt.1	-	131		c.6235T>C								Parts of antibodies, mostly variable regions.												0						GACAGCGCAGATGAGGGACAG	0.612													5	56					0	0	0.00116845	0	0
ADAM6	8755	broad.mit.edu	37	14	107099192	107099192	+	RNA	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:107099192C>A	uc010tyt.1	-	98		c.4530G>T								Parts of antibodies, mostly variable regions.												0						TTTGCAGAGACAGTGAATTCT	0.498													5	38					0.000274275	0.000747143	0.000274275	1	0
Unknown	0	broad.mit.edu	37	15	20362835	20362835	+	Missense_Mutation	SNP	G	A	A	rs140551116	by1000genomes	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:20362835G>A	uc001yte.1	+	1	148	c.97G>A	c.(97-99)GAG>AAG	p.E33K						SubName: Full=Putative uncharacterized protein ENSP00000349734;																		GGGCAACAGCGAGGGAAATGT	0.502													6	35					0	0	0.00198382	0	0
OR4M2	390538	broad.mit.edu	37	15	22368900	22368900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:22368900G>A	uc010tzu.1	+	1	325	c.325G>A	c.(325-327)GCT>ACT	p.A109T	LOC727924_uc001yua.2_RNA|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	109	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		CTTTGCTGGGGCTTCGGAGAT	0.468													9	58					0	0	0.000442599	0	0
OR4M2	390538	broad.mit.edu	37	15	22369419	22369419	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:22369419C>T	uc010tzu.1	+	1	844	c.844C>T	c.(844-846)CCT>TCT	p.P282S	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TTTAATATTCCCTTTACGTAA	0.378													5	23					0	0	0.00116845	0	0
OR4N4	283694	broad.mit.edu	37	15	22382583	22382583	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:22382583C>T	uc001yuc.1	+	7	1092	c.111C>T	c.(109-111)ATC>ATT	p.I37I	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Silent_p.I37I	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	37	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TCTACCTTATCATCCTCCCTG	0.433													46	256					0	0	0.00361006	0	0
MAGEL2	54551	broad.mit.edu	37	15	23889834	23889834	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:23889834G>A	uc001ywj.3	-	1	1342	c.1247C>T	c.(1246-1248)CCC>CTC	p.P416L		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		CTCATCCAAGGGAGACAAGGG	0.572													15	17					0	0	0.00316338	0	0
MAGEL2	54551	broad.mit.edu	37	15	23890501	23890501	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:23890501G>A	uc001ywj.3	-	1	675	c.580C>T	c.(580-582)CAG>TAG	p.Q194*		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		GAGGCAGGCTGAAACTGGGAG	0.582													14	63					0	0	0.000958276	0	0
C15orf2	23742	broad.mit.edu	37	15	24922679	24922679	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:24922679C>T	uc001ywo.2	+	1	2139	c.1665C>T	c.(1663-1665)TCC>TCT	p.S555S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	555					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CAGTCATTTCCACTGTCACAA	0.488													27	68					0	0	0.000878237	0	0
SNORD109B	338429	broad.mit.edu	37	15	25287125	25287125	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:25287125C>T	uc001yxf.1	+	1		c.5C>T				NR_001295				Homo sapiens small nucleolar RNA, C/D box 109B (SNORD109B), non-coding RNA.												0						TTGTTTGGATCGATGATGAGA	0.428													35	25					0	0	0.00222228	0	0
GABRG3	2567	broad.mit.edu	37	15	27271920	27271920	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:27271920C>G	uc001zbg.1	+	3	388	c.222C>G	c.(220-222)GAC>GAG	p.D74E	GABRG3_uc001zbf.2_Missense_Mutation_p.D74E	NM_033223	NP_150092	Q99928	GBRG3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, gamma	74	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity				0		all_lung(180;4.58e-12)|Breast(32;0.000625)|Colorectal(260;0.235)		all cancers(64;3.15e-07)|Epithelial(43;1.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0261)		CCGTAATTGACGTTGACATTT	0.393													9	32					0	0	0.000442599	0	0
RYR3	6263	broad.mit.edu	37	15	33855043	33855043	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:33855043C>T	uc001zhi.2	+	11	1048	c.978C>T	c.(976-978)CTC>CTT	p.L326L	RYR3_uc010bar.2_Silent_p.L326L	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	326	Cytoplasmic (By similarity).|MIR 4.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		ATTAGGAACTCAAGGAGAAAT	0.388													8	9					0	0	0.00307968	0	0
RYR3	6263	broad.mit.edu	37	15	33916059	33916059	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:33916059C>T	uc001zhi.2	+	20	2479	c.2409C>T	c.(2407-2409)CCC>CCT	p.P803P	RYR3_uc010bar.2_Silent_p.P803P	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	803	Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TCCTGCCTCCCTCTGGCTATG	0.423													21	69					0	0	0.00278032	0	0
C15orf29	79768	broad.mit.edu	37	15	34445050	34445050	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:34445050C>T	uc001zhp.2	-	4	539	c.379G>A	c.(379-381)GAT>AAT	p.D127N	C15orf29_uc010ubz.1_Missense_Mutation_p.D31N|C15orf29_uc010uca.1_Missense_Mutation_p.D127N	NM_024713	NP_078989	Q9H079	CO029_HUMAN	hypothetical protein LOC79768	127						nucleolus				ovary(1)	1		all_lung(180;1.86e-06)		all cancers(64;5.49e-18)|GBM - Glioblastoma multiforme(113;8.91e-07)|BRCA - Breast invasive adenocarcinoma(123;0.026)|Lung(196;0.229)		GAACCAGAATCACTGGAGTTA	0.388													27	20					0	0	0.00106085	0	0
ACTC1	70	broad.mit.edu	37	15	35083467	35083467	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:35083467T>G	uc001ziu.1	-	6	1081	c.838A>C	c.(838-840)ACT>CCT	p.T280P	uc001zit.1_Intron	NM_005159	NP_005150	P68032	ACTC_HUMAN	cardiac muscle alpha actin 1 proprotein	280					apoptosis|cardiac muscle tissue morphogenesis|cardiac myofibril assembly|muscle filament sliding|skeletal muscle thin filament assembly	actomyosin, actin part|cytosol|I band	ATP binding|ATPase activity|myosin binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(180;2.3e-08)		all cancers(64;5.83e-19)|GBM - Glioblastoma multiforme(113;1.98e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0244)		CTATTGTAAGTTGTTTCATGG	0.338													41	54					0	0	0.00148497	0	0
SPRED1	161742	broad.mit.edu	37	15	38643461	38643461	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:38643461T>A	uc001zka.3	+	7	1266	c.931T>A	c.(931-933)TTT>ATT	p.F311I		NM_152594	NP_689807	Q7Z699	SPRE1_HUMAN	sprouty-related protein 1 with EVH-1 domain	311					inactivation of MAPK activity|multicellular organismal development	caveola|nucleus	stem cell factor receptor binding			ovary(2)|lung(2)|skin(1)	5		all_cancers(109;4.88e-13)|all_epithelial(112;1.83e-11)|Lung NSC(122;2.21e-09)|all_lung(180;4.64e-08)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(113;2.41e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0244)		CTCTGTGGTATTTAAGACGCA	0.388									Legius_syndrome				21	7					0	0	0.00121646	0	0
PAK6	56924	broad.mit.edu	37	15	40558353	40558353	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:40558353G>A	uc010bbl.2	+	5	955	c.515G>A	c.(514-516)GGG>GAG	p.G172E	PAK6_uc010bbm.2_Missense_Mutation_p.G172E|PAK6_uc001zky.3_Missense_Mutation_p.G172E|PAK6_uc010bbn.2_Missense_Mutation_p.G172E|PAK6_uc001zlb.2_Missense_Mutation_p.G172E	NM_001128628	NP_001122100	Q9NQU5	PAK6_HUMAN	p21-activated kinase 6	172	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(5)|large_intestine(1)|ovary(1)|skin(1)	8		all_cancers(109;1.13e-18)|all_epithelial(112;1.62e-15)|Lung NSC(122;5.67e-11)|all_lung(180;1.41e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0823)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.51e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0544)		CTGCCCAATGGGCTGGCTGCA	0.692													5	3					0	0	0.000602214	0	0
PLCB2	5330	broad.mit.edu	37	15	40589053	40589053	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:40589053G>A	uc001zld.2	-	14	1681	c.1380C>T	c.(1378-1380)ATC>ATT	p.I460I	PLCB2_uc010bbo.2_Silent_p.I460I|PLCB2_uc010ucm.1_Silent_p.I460I	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	460	PI-PLC X-box.				activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		TCTTGTTCTTGATGAGGATCT	0.582													30	23					0	0	0.0024448	0	0
DLL4	54567	broad.mit.edu	37	15	41228588	41228589	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:41228588_41228589CC>TT	uc001zng.1	+	9	1723_1724	c.1403_1404CC>TT	c.(1402-1404)GCC>GTT	p.A468V		NM_019074	NP_061947	Q9NR61	DLL4_HUMAN	delta-like 4 protein precursor	468	EGF-like 7.|Extracellular (Potential).				blood circulation|cell communication|cell differentiation|Notch receptor processing|Notch signaling pathway	integral to membrane|plasma membrane	calcium ion binding|Notch binding			breast(2)	2		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;1.07e-05)|COAD - Colon adenocarcinoma(120;0.15)|BRCA - Breast invasive adenocarcinoma(123;0.164)		ACCTGCCCTGCCGGCTTCTCTG	0.624													15	1					0	0	6.4e-05	0	0
PLA2G4E	123745	broad.mit.edu	37	15	42285015	42285016	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:42285015_42285016GG>AA	uc001zow.1	-	12	1302_1303	c.1302_1303CC>TT	c.(1300-1305)CTCCGG>CTTTGG	p.R435W	PLA2G4E_uc010udc.1_5'UTR|PLA2G4E_uc001zov.1_Missense_Mutation_p.R88W	NM_001080490	NP_001073959	Q3MJ16	PA24E_HUMAN	phospholipase A2, group 4E	452	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity				0		all_cancers(109;8.09e-13)|all_epithelial(112;2.03e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.0273)		OV - Ovarian serous cystadenocarcinoma(18;7.61e-18)|GBM - Glioblastoma multiforme(94;3.07e-06)		CTGCGCTGCCGGAGCTCCTCCT	0.579													17	27					0	0	6.4e-05	0	0
PLA2G4F	255189	broad.mit.edu	37	15	42439349	42439349	+	Silent	SNP	G	A	A	rs144722412		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:42439349G>A	uc001zoz.2	-	13	1455	c.1392C>T	c.(1390-1392)CTC>CTT	p.L464L	PLA2G4F_uc010bcq.2_5'Flank|PLA2G4F_uc001zoy.2_Silent_p.L96L|PLA2G4F_uc010bcr.2_Silent_p.L215L|PLA2G4F_uc001zpa.2_Silent_p.L215L|PLA2G4F_uc010bcs.2_Silent_p.L251L	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	464	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		ACTCAACAAGGAGGCCCCAGA	0.592													5	16					0	0	0.00116845	0	0
ZFP106	64397	broad.mit.edu	37	15	42743985	42743985	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:42743985A>C	uc001zpw.2	-	2	751	c.416T>G	c.(415-417)TTT>TGT	p.F139C	ZFP106_uc001zpv.2_Intron|ZFP106_uc001zpx.2_Intron|ZFP106_uc010udh.1_5'UTR|ZFP106_uc001zpy.1_Missense_Mutation_p.F162C	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	zinc finger protein 106 homolog	139						nucleolus	zinc ion binding			central_nervous_system(2)|ovary(1)	3		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		AGTATTATTAAAGCCATCTTT	0.493													24	37					0	0	0.00229938	0	0
UBR1	197131	broad.mit.edu	37	15	43339438	43339438	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:43339438G>A	uc001zqq.2	-	14	1655	c.1589C>T	c.(1588-1590)CCT>CTT	p.P530L	UBR1_uc010udk.1_Missense_Mutation_p.P530L	NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	530					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		CTCCCAATCAGGATCCACTTC	0.418													119	56					0	0	0.00361006	0	0
TP53BP1	7158	broad.mit.edu	37	15	43712807	43712807	+	Silent	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:43712807A>T	uc001zrs.2	-	21	4510	c.4362T>A	c.(4360-4362)GCT>GCA	p.A1454A	TP53BP1_uc010udp.1_Silent_p.A1454A|TP53BP1_uc001zrq.3_Silent_p.A1459A|TP53BP1_uc001zrr.3_Silent_p.A1459A|TP53BP1_uc010udq.1_Silent_p.A1459A	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	1454					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		GCAAAGCACCAGCACCCACAT	0.522								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					11	55					0	0	0.000673444	0	0
MAP1A	4130	broad.mit.edu	37	15	43815729	43815729	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:43815729G>A	uc001zrt.2	+	4	2525	c.2058G>A	c.(2056-2058)CAG>CAA	p.Q686Q		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	686						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	AACATATGCAGGAACCCTTGA	0.507													11	18					0	0	0.000978159	0	0
FRMD5	84978	broad.mit.edu	37	15	44180422	44180422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:44180422C>T	uc001ztl.2	-	10	1012	c.835G>A	c.(835-837)GCG>ACG	p.A279T	FRMD5_uc001ztj.1_5'UTR|FRMD5_uc001ztk.1_Missense_Mutation_p.A185T|FRMD5_uc010uef.1_5'Flank|FRMD5_uc001ztm.2_5'UTR|FRMD5_uc001ztn.2_Missense_Mutation_p.A45T	NM_032892	NP_116281	Q7Z6J6	FRMD5_HUMAN	FERM domain containing 5 isoform 2	279	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(109;2.29e-15)|all_epithelial(112;9.98e-13)|Lung NSC(122;4.89e-08)|all_lung(180;5.08e-07)|Melanoma(134;0.0275)		all cancers(107;8.63e-20)|GBM - Glioblastoma multiforme(94;3.63e-06)		TGCTTACACGCTTCAGGAGTT	0.428													26	10					0	0	0.00127121	0	0
DUOX1	53905	broad.mit.edu	37	15	45431792	45431792	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:45431792G>A	uc001zus.1	+	13	1730	c.1384G>A	c.(1384-1386)GAC>AAC	p.D462N	DUOX1_uc001zut.1_Missense_Mutation_p.D462N|DUOX1_uc010bee.1_Intron	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	462	Peroxidase-like; mediates peroxidase activity.|Extracellular (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		CCGGAGCAATGACACTGTGAG	0.607													10	7					0	0	0.000673444	0	0
SLC28A2	9153	broad.mit.edu	37	15	45545460	45545460	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:45545460A>T	uc001zva.2	+	2	112	c.47A>T	c.(46-48)GAG>GTG	p.E16V		NM_004212	NP_004203	O43868	S28A2_HUMAN	solute carrier family 28 (sodium-coupled	16					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding|nucleoside:sodium symporter activity|purine nucleoside transmembrane transporter activity			ovary(4)	4		all_cancers(109;8.53e-07)|all_epithelial(112;1.39e-05)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.77e-16)|GBM - Glioblastoma multiforme(94;2.71e-06)		TCCACAGTGGAGACTGGCACA	0.507													8	14					0	0	0.000442599	0	0
FBN1	2200	broad.mit.edu	37	15	48704789	48704789	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:48704789C>T	uc001zwx.1	-	65	8531	c.8203G>A	c.(8203-8205)GAA>AAA	p.E2735K	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	2735					heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		GCATCAGTTTCGTTTGTGCTT	0.498													43	21					0	0	0.00222228	0	0
ATP8B4	79895	broad.mit.edu	37	15	50215689	50215689	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:50215689G>A	uc001zxu.2	-	17	1787	c.1645C>T	c.(1645-1647)CGA>TGA	p.R549*	ATP8B4_uc010ber.2_Nonsense_Mutation_p.R422*|ATP8B4_uc010ufd.1_Nonsense_Mutation_p.R359*|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	549	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		TCTGGGTTTCGAACTGAAAAG	0.378													7	20					0	0	0.000274275	0	0
ATP8B4	79895	broad.mit.edu	37	15	50226266	50226266	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:50226266G>A	uc001zxu.2	-	15	1543	c.1401C>T	c.(1399-1401)TTC>TTT	p.F467F	ATP8B4_uc010ber.2_Silent_p.F340F|ATP8B4_uc010ufd.1_Silent_p.F340F|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	467	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		GTAACCTAAGGAATTCATGAA	0.388													6	24					0	0	0.000274275	0	0
HDC	3067	broad.mit.edu	37	15	50546385	50546385	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:50546385C>T	uc001zxz.2	-	6	768	c.662G>A	c.(661-663)GGG>GAG	p.G221E	HDC_uc001zxy.2_5'Flank|HDC_uc010uff.1_Missense_Mutation_p.G221E|HDC_uc010bet.1_Missense_Mutation_p.G142E|HDC_uc010beu.1_Missense_Mutation_p.G221E	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	221					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	AAGAGCTTCCCCTCGGAGTGA	0.493													26	17					0	0	0.000720815	0	0
DMXL2	23312	broad.mit.edu	37	15	51839457	51839457	+	Missense_Mutation	SNP	G	A	A	rs143486672		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:51839457G>A	uc002abf.2	-	7	941	c.716C>T	c.(715-717)TCG>TTG	p.S239L	DMXL2_uc010ufy.1_Missense_Mutation_p.S239L|DMXL2_uc010bfa.2_Missense_Mutation_p.S239L	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	239	WD 3.					cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		TTTGCGCCACGAAAAACCTGT	0.358													16	9					0	0	0.00316338	0	0
GNB5	10681	broad.mit.edu	37	15	52446245	52446245	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:52446245G>A	uc002abt.1	-	4	332	c.267C>T	c.(265-267)GCC>GCT	p.A89A	GNB5_uc002abr.1_Silent_p.A47A|GNB5_uc002abs.1_Silent_p.A47A|GNB5_uc002abu.3_Silent_p.A47A	NM_016194	NP_057278	O14775	GBB5_HUMAN	guanine nucleotide-binding protein, beta-5	89						heterotrimeric G-protein complex	GTPase activity|signal transducer activity			lung(1)	1				all cancers(107;0.0163)		ACTGCCCCAGGGCCTCCACCC	0.572													6	13					0	0	0.00198382	0	0
MYO5C	55930	broad.mit.edu	37	15	52531999	52531999	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:52531999G>A	uc010bff.2	-	21	2771	c.2634C>T	c.(2632-2634)ATC>ATT	p.I878I	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_Intron	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	878	IQ 5.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		CGAATCGTCGGATACTCTGGA	0.438													21	25					0	0	0.00152264	0	0
WDR72	256764	broad.mit.edu	37	15	53908078	53908078	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:53908078G>A	uc002acj.2	-	15	2367	c.2325C>T	c.(2323-2325)TCC>TCT	p.S775S	WDR72_uc010bfi.1_Silent_p.S775S	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	775										lung(1)|skin(1)	2				all cancers(107;0.0511)		GCATTTTTTTGGAGATCTTCA	0.403													14	36					0	0	0.000566183	0	0
UNC13C	440279	broad.mit.edu	37	15	54305220	54305220	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:54305220G>A	uc002ack.2	+	1	120	c.120G>A	c.(118-120)AAG>AAA	p.K40K		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	40					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AGCAGAAAAAGGATCAAGACT	0.368													27	10					0	0	0.00127121	0	0
DYX1C1	161582	broad.mit.edu	37	15	55789929	55789929	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:55789929C>T	uc002adc.2	-	3	620	c.252G>A	c.(250-252)GAG>GAA	p.E84E	CCPG1_uc002acy.2_5'UTR|DYX1C1_uc010ugh.1_RNA|DYX1C1_uc010ugi.1_RNA|DYX1C1_uc002adb.2_Silent_p.E84E|DYX1C1_uc002add.2_Silent_p.E84E	NM_130810	NP_570722	Q8WXU2	DYXC1_HUMAN	dyslexia susceptibility 1 candidate 1 isoform a	84	CS.|Mediates interaction with ESR1 and STUB1.				neuron migration|regulation of estrogen receptor signaling pathway|regulation of proteasomal protein catabolic process	cytoplasm|nucleus	estrogen receptor binding			skin(1)	1				all cancers(107;0.0118)|GBM - Glioblastoma multiforme(80;0.171)		CAGAAAGGGTCTCCCACATGG	0.393													25	71					0	0	0.00127121	0	0
CGNL1	84952	broad.mit.edu	37	15	57731589	57731589	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:57731589G>A	uc002aeg.2	+	2	1468	c.1392G>A	c.(1390-1392)CCG>CCA	p.P464P	CGNL1_uc010bfw.2_Silent_p.P464P	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	464	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		CTCCCCAGCCGAACATAGATG	0.592													9	30					0	0	0.000442599	0	0
VPS13C	54832	broad.mit.edu	37	15	62253984	62253984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:62253984G>A	uc002agz.2	-	35	3786	c.3712C>T	c.(3712-3714)CGT>TGT	p.R1238C	VPS13C_uc002aha.2_Missense_Mutation_p.R1195C|VPS13C_uc002ahb.1_Missense_Mutation_p.R1238C|VPS13C_uc002ahc.1_Missense_Mutation_p.R1195C	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	1238					protein localization					ovary(2)	2						ATGGAAACACGAAAACTCCTC	0.458													19	43					0	0	0.00074312	0	0
KIAA0101	9768	broad.mit.edu	37	15	64669029	64669029	+	Missense_Mutation	SNP	A	T	T	rs11554309		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:64669029A>T	uc002ank.2	-	3	335	c.203T>A	c.(202-204)TTC>TAC	p.F68Y	KIAA0101_uc002anl.2_Intron	NM_014736	NP_055551	Q15004	PAF_HUMAN	hypothetical protein LOC9768 isoform 1	68				F->A: Loss of binding to PCNA.		mitochondrion|nucleus				central_nervous_system(1)	1						CAACCTAAAGAATTCTCCAAT	0.403													7	32					0	0	0.000274275	0	0
CILP	8483	broad.mit.edu	37	15	65490746	65490746	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:65490746G>A	uc002aon.2	-	9	2059	c.1878C>T	c.(1876-1878)TTC>TTT	p.F626F		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	626					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						GGGGATCCAGGAAGGTCACAC	0.522													54	22					0	0	0.00361006	0	0
IQCH	64799	broad.mit.edu	37	15	67571772	67571772	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:67571772C>T	uc002aqo.1	+	4	356	c.309C>T	c.(307-309)TTC>TTT	p.F103F	IQCH_uc010ujv.1_5'UTR|IQCH_uc002aqn.1_Intron|IQCH_uc002aqq.1_Intron|IQCH_uc002aqp.1_Intron|IQCH_uc002aqm.2_Silent_p.F103F	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	103										skin(3)|ovary(1)	4				Colorectal(3;0.0856)		CATTTATTTTCCCTCAGGAAT	0.323													30	12					0	0	0.00428921	0	0
ITGA11	22801	broad.mit.edu	37	15	68642958	68642958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:68642958C>T	uc002ari.2	-	9	1144	c.1057G>A	c.(1057-1059)GAA>AAA	p.E353K	ITGA11_uc010bib.2_Missense_Mutation_p.E353K	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	353	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	TGCTTACCTTCCAGGCTGAAG	0.507													27	13					0	0	0.00106085	0	0
THSD4	79875	broad.mit.edu	37	15	72021046	72021046	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:72021046G>A	uc002atb.1	+	8	1595	c.1516G>A	c.(1516-1518)GAG>AAG	p.E506K	THSD4_uc002atd.1_Missense_Mutation_p.E180K|THSD4_uc010ukg.1_Missense_Mutation_p.E146K|THSD4_uc002ate.2_Missense_Mutation_p.E146K	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	506						proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						TCCCACCAACGAGATCTTGGA	0.458													32	89					0	0	0.00283554	0	0
NR2E3	10002	broad.mit.edu	37	15	72109979	72109979	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:72109979G>A	uc002ati.2	+	9	1377	c.1187G>A	c.(1186-1188)GGG>GAG	p.G396E		NM_014249	NP_055064	Q9Y5X4	NR2E3_HUMAN	photoreceptor-specific nuclear receptor isoform	396					phototransduction|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0						AAGACCATAGGGAATACTCCA	0.358													33	10					0	0	0.00209593	0	0
MYO9A	4649	broad.mit.edu	37	15	72119333	72119333	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:72119333G>A	uc002atl.3	-	42	7708	c.7235C>T	c.(7234-7236)TCC>TTC	p.S2412F	MYO9A_uc002atj.2_Missense_Mutation_p.S343F|MYO9A_uc002atk.2_Missense_Mutation_p.S1207F	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	2412	Tail.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						CAACTTGCTGGAAGGTTCAGA	0.443													10	35					0	0	0.000978159	0	0
BBS4	585	broad.mit.edu	37	15	73002052	73002052	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:73002052C>T	uc002avb.2	+	3	131	c.88C>T	c.(88-90)CCT>TCT	p.P30S	BBS4_uc010ukv.1_Missense_Mutation_p.P18S|BBS4_uc002avc.2_5'UTR|BBS4_uc002avd.2_Missense_Mutation_p.P38S	NM_033028	NP_149017	Q96RK4	BBS4_HUMAN	Bardet-Biedl syndrome 4	30	Required for localization to centrosomes.				adult behavior|brain morphogenesis|cell cycle cytokinesis|centrosome organization|cerebral cortex development|convergent extension involved in gastrulation|dendrite development|fat cell differentiation|heart looping|hippocampus development|intracellular transport|maintenance of protein location in nucleus|melanosome transport|microtubule anchoring at centrosome|neural tube closure|nonmotile primary cilium assembly|photoreceptor cell maintenance|pigment granule aggregation in cell center|positive regulation of flagellum assembly|regulation of cilium beat frequency involved in ciliary motility|regulation of cytokinesis|regulation of lipid metabolic process|retina homeostasis|retinal rod cell development|sensory perception of smell|sensory processing|spermatid development|striatum development	BBSome|centriolar satellite|centriole|cilium membrane|microtubule basal body|motile cilium|nonmotile primary cilium|nucleus|pericentriolar material	alpha-tubulin binding|beta-tubulin binding|dynactin binding|microtubule motor activity				0						TCCAGAGTTTCCTATTTTGGA	0.343									Bardet-Biedl_syndrome				43	82					0	0	0.00361006	0	0
CYP1A1	1543	broad.mit.edu	37	15	75014995	75014995	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:75014995G>A	uc002ayp.3	-	2	566	c.444C>T	c.(442-444)GCC>GCT	p.A148A	CYP1A1_uc010bjv.2_RNA|CYP1A1_uc010bjw.2_RNA|CYP1A1_uc010bju.2_Intron|CYP1A1_uc010bjx.2_Intron|CYP1A1_uc002ayq.3_Silent_p.A148A|CYP1A1_uc010bjy.2_Silent_p.A148A|CYP1A1_uc010bjz.1_Intron	NM_000499	NP_000490	P04798	CP1A1_HUMAN	cytochrome P450, family 1, subfamily A,	148					cellular lipid metabolic process|drug metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding|vitamin D 24-hydroxylase activity			ovary(2)|breast(2)|pancreas(1)	5					Arsenic trioxide(DB01169)|Benzphetamine(DB00865)|Bleomycin(DB00290)|Chlorzoxazone(DB00356)|Dacarbazine(DB00851)|Dactinomycin(DB00970)|Esomeprazole(DB00736)|Estrone(DB00655)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Ginseng(DB01404)|Granisetron(DB00889)|Ketoconazole(DB01026)|Menadione(DB00170)|Picrotoxin(DB00466)|Primaquine(DB01087)|Quinidine(DB00908)|Quinine(DB00468)|Thiabendazole(DB00730)	CTGGGTCAGAGGCAATGGAGA	0.592									Endometrial_Cancer_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia				68	41					0	0	0.00361006	0	0
C15orf39	56905	broad.mit.edu	37	15	75498755	75498755	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:75498755C>T	uc002azp.3	+	2	686	c.366C>T	c.(364-366)TAC>TAT	p.Y122Y	C15orf39_uc002azq.3_Silent_p.Y122Y|C15orf39_uc002azr.3_5'Flank	NM_015492	NP_056307	Q6ZRI6	CO039_HUMAN	hypothetical protein LOC56905	122											0						CTCACTCCTACCCAGGCCCAC	0.612													5	10					0	0	0.00307968	0	0
RASGRF1	5923	broad.mit.edu	37	15	79324609	79324609	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:79324609G>A	uc002beq.2	-	7	1383	c.1008C>T	c.(1006-1008)TTC>TTT	p.F336F	RASGRF1_uc002bep.2_Silent_p.F336F|RASGRF1_uc010blm.1_Silent_p.F258F|RASGRF1_uc002ber.3_Silent_p.F336F	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	336	DH.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						GGTTGCGGACGAACTCTTGGT	0.587													18	28					0	0	0.00188189	0	0
KIAA1024	23251	broad.mit.edu	37	15	79760660	79760660	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:79760660G>A	uc002bew.1	+	4	2760	c.2685G>A	c.(2683-2685)CTG>CTA	p.L895L	KIAA1024_uc010unk.1_3'UTR	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	895	Helical; (Potential).					integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						TAGCTGCTCTGATCGCTGCTG	0.453													9	26					0	0	0.000274275	0	0
TMC3	342125	broad.mit.edu	37	15	81636269	81636269	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:81636269C>T	uc002bgo.1	-	14	1636	c.1636G>A	c.(1636-1638)GAG>AAG	p.E546K	TMC3_uc010blr.1_RNA|TMC3_uc002bgp.2_Missense_Mutation_p.E546K	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	546	Extracellular (Potential).					integral to membrane				ovary(1)|liver(1)	2						AACTTGCTCTCCAGATCCCAA	0.453													17	9					0	0	0.00121646	0	0
BTBD1	53339	broad.mit.edu	37	15	83718918	83718918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:83718918C>T	uc002bjn.2	-	3	774	c.571G>A	c.(571-573)GAT>AAT	p.D191N	BTBD1_uc002bjo.2_Missense_Mutation_p.D191N	NM_025238	NP_079514	Q9H0C5	BTBD1_HUMAN	BTB (POZ) domain containing 1 isoform 1	191						cytoplasmic mRNA processing body|protein complex	protein binding			ovary(1)|central_nervous_system(1)	2				all cancers(203;0.000186)		TGAGGTTCATCAAATAATCGA	0.303													29	10					0	0	0.00178596	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84582012	84582012	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:84582012A>C	uc002bjz.3	+	16	2093	c.1869A>C	c.(1867-1869)GAA>GAC	p.E623D	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.E623D|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.E623D	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	623	TSP type-1 4.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			GCCTCCTGGAAGCATGTGATG	0.612													13	5					0	0	0.00136819	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84611407	84611407	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:84611407G>A	uc002bjz.3	+	18	2401	c.2177G>A	c.(2176-2178)CGA>CAA	p.R726Q	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.R726Q|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.R726Q	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	726	TSP type-1 5.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			ATTCAGACCCGAGATGTGTAC	0.537													10	41					0	0	0.000978159	0	0
SLC28A1	9154	broad.mit.edu	37	15	85438184	85438184	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:85438184C>T	uc002blg.2	+	6	493	c.291C>T	c.(289-291)TTC>TTT	p.F97F	SLC28A1_uc010upd.1_Silent_p.F19F|SLC28A1_uc010bnb.2_Silent_p.F97F|SLC28A1_uc010upe.1_Silent_p.F97F|SLC28A1_uc010upf.1_Silent_p.F97F|SLC28A1_uc010upg.1_Silent_p.F97F|SLC28A1_uc002blf.2_Silent_p.F97F	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	97	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			TCTCTGCCTTCCTGCTGGTGG	0.642													22	44					0	0	0.00229938	0	0
AGBL1	123624	broad.mit.edu	37	15	86801215	86801215	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:86801215G>A	uc002blz.1	+	8	864	c.784G>A	c.(784-786)GAT>AAT	p.D262N		NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	262	Asp-rich.				C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						AGATGATGGCGATGATGAAGT	0.433													33	66					0	0	0.00111076	0	0
NTRK3	4916	broad.mit.edu	37	15	88476406	88476406	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:88476406C>T	uc002bme.1	-	15	1888	c.1726G>A	c.(1726-1728)GAT>AAT	p.D576N	NTRK3_uc002bmh.2_Missense_Mutation_p.D568N|NTRK3_uc002bmf.1_Missense_Mutation_p.D576N|NTRK3_uc010upl.1_Missense_Mutation_p.D478N|NTRK3_uc010bnh.1_Missense_Mutation_p.D568N	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	576	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			AGGGTGGGATCCTTCAGGGCC	0.562			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			20	7					0	0	0.00332997	0	0
ACAN	176	broad.mit.edu	37	15	89400846	89400846	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:89400846A>G	uc010upo.1	+	12	5404	c.5030A>G	c.(5029-5031)GAA>GGA	p.E1677G	ACAN_uc010upp.1_Missense_Mutation_p.E1677G|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1677					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			ACTGCAAGTGAACTGGAAGGG	0.527													33	74					0	0	0.00283554	0	0
ACAN	176	broad.mit.edu	37	15	89402028	89402028	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:89402028G>A	uc010upo.1	+	12	6586	c.6212G>A	c.(6211-6213)GGA>GAA	p.G2071E	ACAN_uc010upp.1_Missense_Mutation_p.G2071E|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	2071					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GAGTCCAGTGGAAAAGTCTCC	0.522													9	14					0	0	0.000442599	0	0
RLBP1	6017	broad.mit.edu	37	15	89761846	89761846	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:89761846C>T	uc002bnl.2	-	4	471	c.91G>A	c.(91-93)GGA>AGA	p.G31R		NM_000326	NP_000317	P12271	RLBP1_HUMAN	retinaldehyde binding protein 1	31					response to stimulus|visual perception|vitamin A metabolic process	cytoplasm|soluble fraction	retinol binding|transporter activity			central_nervous_system(1)	1	Lung NSC(78;0.0472)|all_lung(78;0.089)				Vitamin A(DB00162)	AAGACAGGTCCATGGTCCTTG	0.602													5	37					0	0	0.000602214	0	0
FANCI	55215	broad.mit.edu	37	15	89811691	89811691	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:89811691C>T	uc010bnp.1	+	10	907	c.817C>T	c.(817-819)CTA>TTA	p.L273L	FANCI_uc002bnm.1_Silent_p.L273L|FANCI_uc002bnn.1_RNA|FANCI_uc002bnp.1_Silent_p.L94L	NM_001113378	NP_001106849	Q9NVI1	FANCI_HUMAN	Fanconi anemia, complementation group I isoform	273					cell cycle|DNA repair	nucleoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)					CACCATTATTCTACACATTGT	0.388								Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				27	83					0	0	0.001512	0	0
UNC45A	55898	broad.mit.edu	37	15	91491904	91491904	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:91491904C>T	uc002bqg.2	+	13	2098	c.1758C>T	c.(1756-1758)CTC>CTT	p.L586L	UNC45A_uc002bqd.2_Silent_p.L571L|UNC45A_uc010uqr.1_5'UTR|UNC45A_uc002bqi.2_5'Flank	NM_018671	NP_061141	Q9H3U1	UN45A_HUMAN	smooth muscle cell associated protein-1 isoform	586					cell differentiation|muscle organ development	nucleus|perinuclear region of cytoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			GGTCAGTGCTCTTTGCGGTGG	0.597													149	118					0	0	0.00361006	0	0
C15orf51	196968	broad.mit.edu	37	15	100332244	100332244	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:100332244C>T	uc010urx.1	-	5		c.1948G>A			C15orf51_uc010ury.1_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						GCAGCGGTCCCAGCCCCAGTG	0.647													5	17					0	0	0.000602214	0	0
C15orf51	196968	broad.mit.edu	37	15	100332404	100332404	+	RNA	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:100332404G>A	uc010urx.1	-	5		c.1788C>T			C15orf51_uc010ury.1_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						GCTCCAGAGTGGCCTTATGGA	0.542													36	59					0	0	0.00111076	0	0
CHSY1	22856	broad.mit.edu	37	15	101718740	101718740	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:101718740T>C	uc002bwt.1	-	4	1745	c.1262A>G	c.(1261-1263)AAG>AGG	p.K421R	CHSY1_uc010usd.1_Missense_Mutation_p.K149R	NM_014918	NP_055733	Q86X52	CHSS1_HUMAN	chondroitin sulfate synthase 1	421	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity				0	Lung NSC(78;0.00217)|all_lung(78;0.00271)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CCCTCTGGTCTTGGCGTTGGC	0.572													28	42					0	0	0.00209593	0	0
OR4F15	390649	broad.mit.edu	37	15	102359018	102359018	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:102359018C>T	uc010uts.1	+	1	629	c.629C>T	c.(628-630)TCC>TTC	p.S210F		NM_001001674	NP_001001674	Q8NGB8	O4F15_HUMAN	olfactory receptor, family 4, subfamily F,	210	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			TCTGTGGGCTCCTTTGTCTTG	0.473													23	76					0	0	0.000720815	0	0
LUC7L	55692	broad.mit.edu	37	16	256035	256035	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:256035C>T	uc002cgc.1	-	5	589	c.478G>A	c.(478-480)GAA>AAA	p.E160K	LUC7L_uc002cga.1_Missense_Mutation_p.E160K|LUC7L_uc002cgd.1_RNA|LUC7L_uc002cge.1_Missense_Mutation_p.E160K|LUC7L_uc002cgb.1_Missense_Mutation_p.E74K	NM_201412	NP_958815	Q9NQ29	LUC7L_HUMAN	LUC7-like isoform b	160	Potential.						metal ion binding			central_nervous_system(1)	1		all_cancers(16;1.1e-06)|all_epithelial(16;2.71e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.0138)|all_lung(18;0.0306)				CGAACTTTTTCCACTTCCATA	0.413													34	106					0	0	0.00327116	0	0
RGS11	8786	broad.mit.edu	37	16	320987	320987	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:320987G>A	uc002cgj.1	-	13	978	c.975C>T	c.(973-975)TTC>TTT	p.F325F	RGS11_uc002cgi.1_Silent_p.F304F|RGS11_uc010bqs.1_Silent_p.F314F|RGS11_uc002cgk.1_Silent_p.F141F	NM_183337	NP_899180	O94810	RGS11_HUMAN	regulator of G-protein signalling 11 isoform 1	325	RGS.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			lung(1)|pancreas(1)	2		all_cancers(16;6.71e-07)|all_epithelial(16;1.59e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00769)|all_lung(18;0.0186)				TCTCACCACTGAACTCCTTTC	0.677													13	12					0	0	0.00316338	0	0
AXIN1	8312	broad.mit.edu	37	16	347774	347774	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:347774A>G	uc002cgp.1	-	6	1909	c.1732T>C	c.(1732-1734)TAC>CAC	p.Y578H	AXIN1_uc002cgq.1_Missense_Mutation_p.Y578H	NM_003502	NP_003493	O15169	AXIN1_HUMAN	axin 1 isoform a	578	Interaction with RNF111.|Interaction with PPP2CA.				activation of JUN kinase activity|activation of protein kinase activity|apoptosis|axial mesoderm formation|canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation|cellular protein complex assembly|cellular response to organic cyclic compound|cytoplasmic microtubule organization|determination of left/right symmetry|dorsal/ventral axis specification|embryonic eye morphogenesis|embryonic skeletal joint morphogenesis|forebrain anterior/posterior pattern formation|muscle cell development|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|olfactory placode formation|optic placode formation|positive regulation of JNK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity|regulation of catenin import into nucleus|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway involved in somitogenesis	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|cell cortex|cytoplasmic membrane-bounded vesicle|cytoplasmic microtubule|cytosol|lateral plasma membrane|nucleus|perinuclear region of cytoplasm|postsynaptic density	armadillo repeat domain binding|beta-catenin binding|GTPase activator activity|I-SMAD binding|p53 binding|protein complex scaffold|protein homodimerization activity|protein kinase binding|signal transducer activity|ubiquitin protein ligase binding			breast(1)|liver(1)	2		all_cancers(16;2.75e-07)|all_epithelial(16;1.6e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00774)|all_lung(18;0.0187)				CTCTCTGAGTAGCCTCGGGAC	0.692													19	9					0	0	0.00188189	0	0
RAB40C	57799	broad.mit.edu	37	16	677503	677503	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:677503C>T	uc002chr.2	+	6	843	c.727C>T	c.(727-729)CTG>TTG	p.L243L	RAB40C_uc002chq.2_Silent_p.L224L|WFIKKN1_uc002chs.1_5'Flank	NM_021168	NP_066991	Q96S21	RB40C_HUMAN	RAB40C, member RAS oncogene family	243					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding				0		Hepatocellular(780;0.0218)				TTCCTACTCCCTGGCCAGCGG	0.657													34	68					0	0	0.000953801	0	0
CACNA1H	8912	broad.mit.edu	37	16	1270521	1270521	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:1270521C>T	uc002cks.2	+	35	6837	c.6589C>T	c.(6589-6591)CCT>TCT	p.P2197S	CACNA1H_uc002ckt.2_Missense_Mutation_p.P2191S|CACNA1H_uc002cku.2_Missense_Mutation_p.P892S|CACNA1H_uc010brj.2_Missense_Mutation_p.P908S|CACNA1H_uc002ckv.2_Missense_Mutation_p.P886S	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	2197	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	GGTGGAACCCCCTGCGGAGGA	0.721													13	36					0	0	0.000566183	0	0
CACNA1H	8912	broad.mit.edu	37	16	1270807	1270807	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:1270807C>T	uc002cks.2	+	35	7123	c.6875C>T	c.(6874-6876)TCC>TTC	p.S2292F	CACNA1H_uc002ckt.2_Missense_Mutation_p.S2286F|CACNA1H_uc002cku.2_Missense_Mutation_p.S987F|CACNA1H_uc010brj.2_Missense_Mutation_p.S1003F|CACNA1H_uc002ckv.2_Missense_Mutation_p.S981F	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	2292	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	ACCCCAGAATCCAGAGCTTCC	0.637													40	25					0	0	0.00128727	0	0
TPSAB1	7177	broad.mit.edu	37	16	1291234	1291234	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:1291234C>T	uc002ckz.2	+	3	194	c.142C>T	c.(142-144)CTG>TTG	p.L48L	TPSAB1_uc010uux.1_5'UTR	NM_003294	NP_003285	Q15661	TRYB1_HUMAN	tryptase alpha/beta 1 precursor	48	Peptidase S1.				defense response|proteolysis	extracellular space	protein binding|serine-type endopeptidase activity				0		Hepatocellular(780;0.00369)				GCAGGTGAGCCTGAGAGTCCA	0.697													18	47					0	0	0.00121646	0	0
TELO2	9894	broad.mit.edu	37	16	1550438	1550438	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:1550438C>T	uc002cly.2	+	8	1384	c.1093C>T	c.(1093-1095)CTC>TTC	p.L365F	TELO2_uc010uvg.1_Missense_Mutation_p.L365F	NM_016111	NP_057195	Q9Y4R8	TELO2_HUMAN	TEL2, telomere maintenance 2, homolog	365						chromosome, telomeric region|cytoplasm|membrane|nucleus	protein binding				0		Hepatocellular(780;0.219)				CAAGGCTGTCCTCATCTGCCT	0.701													5	16					0	0	0.00198382	0	0
ZNF598	90850	broad.mit.edu	37	16	2049661	2049661	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:2049661G>A	uc002cof.1	-	11	1904	c.1889C>T	c.(1888-1890)GCC>GTC	p.A630V	ZNF598_uc002coe.1_5'UTR	NM_178167	NP_835461	Q86UK7	ZN598_HUMAN	zinc finger protein 598	630	Pro-rich.					intracellular	zinc ion binding			lung(1)|breast(1)	2						AACGACGACGGCAACTGGCCC	0.706													13	25					0	0	0.00185496	0	0
TSC2	7249	broad.mit.edu	37	16	2129313	2129313	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:2129313G>A	uc002con.2	+	28	3274	c.3168G>A	c.(3166-3168)AGG>AGA	p.R1056R	TSC2_uc010bsd.2_Silent_p.R1056R|TSC2_uc002coo.2_Silent_p.R1012R|TSC2_uc010uvv.1_Silent_p.R976R|TSC2_uc010uvw.1_Silent_p.R964R|TSC2_uc002cop.2_Silent_p.R812R	NM_000548	NP_000539	P49815	TSC2_HUMAN	tuberous sclerosis 2 isoform 1	1056					cell cycle arrest|endocytosis|heart development|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|negative regulation of cell size|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of protein kinase B signaling cascade|negative regulation of TOR signaling cascade|negative regulation of Wnt receptor signaling pathway|nerve growth factor receptor signaling pathway|neural tube closure|phosphatidylinositol-mediated signaling|positive chemotaxis|protein import into nucleus|protein kinase B signaling cascade|regulation of endocytosis|regulation of insulin receptor signaling pathway|regulation of small GTPase mediated signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm|TSC1-TSC2 complex	GTPase activator activity|protein homodimerization activity			central_nervous_system(4)|lung(3)|ovary(2)|pancreas(1)	10		Hepatocellular(780;0.0202)				CGGGTGGCAGGACCAAAACCT	0.642			D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				43	23					0	0	0.00361006	0	0
TSC2	7249	broad.mit.edu	37	16	2138580	2138580	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:2138580C>T	uc002con.2	+	42	5499	c.5393C>T	c.(5392-5394)TCC>TTC	p.S1798F	TSC2_uc010bsd.2_Missense_Mutation_p.S1775F|TSC2_uc002coo.2_Missense_Mutation_p.S1731F|TSC2_uc010uvv.1_Missense_Mutation_p.S1695F|TSC2_uc010uvw.1_Missense_Mutation_p.S1683F|TSC2_uc002cop.2_Missense_Mutation_p.S1554F|TSC2_uc002coq.2_Missense_Mutation_p.S573F|TSC2_uc002cor.2_Missense_Mutation_p.S499F	NM_000548	NP_000539	P49815	TSC2_HUMAN	tuberous sclerosis 2 isoform 1	1798					cell cycle arrest|endocytosis|heart development|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|negative regulation of cell size|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of protein kinase B signaling cascade|negative regulation of TOR signaling cascade|negative regulation of Wnt receptor signaling pathway|nerve growth factor receptor signaling pathway|neural tube closure|phosphatidylinositol-mediated signaling|positive chemotaxis|protein import into nucleus|protein kinase B signaling cascade|regulation of endocytosis|regulation of insulin receptor signaling pathway|regulation of small GTPase mediated signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm|TSC1-TSC2 complex	GTPase activator activity|protein homodimerization activity			central_nervous_system(4)|lung(3)|ovary(2)|pancreas(1)	10		Hepatocellular(780;0.0202)				CGCCTCATCTCCTCGGTGGAG	0.602			D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				11	15					0	0	0.000978159	0	0
ABCA3	21	broad.mit.edu	37	16	2373621	2373621	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:2373621G>A	uc002cpy.1	-	7	1228	c.516C>T	c.(514-516)TTC>TTT	p.F172F	ABCA3_uc010bsk.1_Silent_p.F172F|ABCA3_uc010bsl.1_Silent_p.F172F|ABCA3_uc002cpz.1_Silent_p.F172F	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	172					response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				TCTCTTTCAGGAAAAAGGAGC	0.498													94	249					0	0	0.00361006	0	0
ZSCAN10	84891	broad.mit.edu	37	16	3139599	3139599	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:3139599C>T	uc002ctv.1	-	5	1759	c.1671G>A	c.(1669-1671)GGG>GGA	p.G557G	ZSCAN10_uc002cty.1_Silent_p.G218G|ZSCAN10_uc002ctw.1_Silent_p.G475G|ZSCAN10_uc002ctx.1_Silent_p.G485G	NM_032805	NP_116194	Q96SZ4	ZSC10_HUMAN	zinc finger and SCAN domain containing 10	557	C2H2-type 9.				negative regulation of transcription, DNA-dependent|viral reproduction	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						CGAAACTCTTCCCGCACTGGG	0.711													6	9					0	0	0.00116845	0	0
ZSCAN10	84891	broad.mit.edu	37	16	3140196	3140196	+	Silent	SNP	G	A	A	rs140343297		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:3140196G>A	uc002ctv.1	-	5	1162	c.1074C>T	c.(1072-1074)TTC>TTT	p.F358F	ZSCAN10_uc002cty.1_Silent_p.F19F|ZSCAN10_uc002ctw.1_Silent_p.F276F|ZSCAN10_uc002ctx.1_Silent_p.F286F	NM_032805	NP_116194	Q96SZ4	ZSC10_HUMAN	zinc finger and SCAN domain containing 10	358	C2H2-type 3.				negative regulation of transcription, DNA-dependent|viral reproduction	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						AGCTCTGGCGGAAGCGGTGGC	0.701													29	92					0	0	0.00283554	0	0
ADCY9	115	broad.mit.edu	37	16	4164539	4164539	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:4164539G>A	uc002cvx.2	-	2	1444	c.905C>T	c.(904-906)TCC>TTC	p.S302F		NM_001116	NP_001107	O60503	ADCY9_HUMAN	adenylate cyclase 9	302	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6						CCTCACCTGGGACATGACGAA	0.617													47	19					0	0	0.00361006	0	0
PPL	5493	broad.mit.edu	37	16	4935829	4935829	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:4935829C>T	uc002cyd.1	-	22	2917	c.2827G>A	c.(2827-2829)GAT>AAT	p.D943N		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	943	Potential.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						AGCACGGGATCCGGCACCTTC	0.607													21	58					0	0	0.00278032	0	0
SEC14L5	9717	broad.mit.edu	37	16	5057370	5057370	+	Silent	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:5057370A>C	uc002cye.2	+	13	1635	c.1455A>C	c.(1453-1455)GGA>GGC	p.G485G		NM_014692	NP_055507	O43304	S14L5_HUMAN	SEC14-like 5	485						integral to membrane|intracellular	transporter activity				0						TCCCCGAAGGAGGGCTGGTCC	0.602													7	27					0	0	0.000442599	0	0
C16orf89	146556	broad.mit.edu	37	16	5110350	5110350	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:5110350C>T	uc010bud.2	-	3	648	c.560G>A	c.(559-561)GGG>GAG	p.G187E	ALG1_uc002cyj.2_Intron|C16orf89_uc002cyk.3_Missense_Mutation_p.G187E	NM_152459	NP_689672	Q6UX73	CP089_HUMAN	hypothetical protein LOC146556 isoform 1	149						extracellular region				ovary(1)|skin(1)	2						GTCCTGGGGCCCGAACGTGGG	0.602													13	20					0	0	0.00185496	0	0
USP7	7874	broad.mit.edu	37	16	8988680	8988680	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:8988680G>A	uc002czl.2	-	29	3271	c.3072C>T	c.(3070-3072)ATC>ATT	p.I1024I	USP7_uc002czj.2_RNA|USP7_uc010uyj.1_Silent_p.I925I|USP7_uc002czk.2_Silent_p.I1008I	NM_003470	NP_003461	Q93009	UBP7_HUMAN	ubiquitin specific peptidase 7	1024					interspecies interaction between organisms|multicellular organismal development|protein deubiquitination|regulation of sequence-specific DNA binding transcription factor activity|ubiquitin-dependent protein catabolic process	cytoplasm|PML body	cysteine-type endopeptidase activity|p53 binding|protein C-terminus binding|transcription factor binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)	3						GCAGGCTCTGGATTCGCTTCA	0.592													31	90					0	0	0.0024448	0	0
GRIN2A	2903	broad.mit.edu	37	16	10274210	10274210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:10274210C>T	uc002czo.3	-	2	607	c.59G>A	c.(58-60)GGT>GAT	p.G20D	GRIN2A_uc010uym.1_Missense_Mutation_p.G20D|GRIN2A_uc002czr.3_Missense_Mutation_p.G20D|GRIN2A_uc010buk.2_Missense_Mutation_p.G20D	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	20					response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CGGCGCCGGACCGCGCCAGAC	0.652													7	31					0	0	0.00198382	0	0
ATF7IP2	80063	broad.mit.edu	37	16	10532044	10532044	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:10532044G>A	uc002czu.2	+	5	1274	c.1047G>A	c.(1045-1047)GGG>GGA	p.G349G	ATF7IP2_uc002czv.2_Silent_p.G349G|ATF7IP2_uc010uyo.1_RNA|ATF7IP2_uc010uyp.1_Intron|ATF7IP2_uc002czw.2_Silent_p.G349G|ATF7IP2_uc010uyq.1_RNA	NM_024997	NP_079273	Q5U623	MCAF2_HUMAN	activating transcription factor 7 interacting	349	Potential.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						AACGCATTGGGAAGACAGAGT	0.338													27	47					0	0	0.00127121	0	0
FAM18A	780776	broad.mit.edu	37	16	10867934	10867934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:10867934C>T	uc010buo.1	-	4	557	c.286G>A	c.(286-288)GAA>AAA	p.E96K	FAM18A_uc010uyr.1_RNA|FAM18A_uc010uys.1_RNA|FAM18A_uc010uyt.1_RNA|FAM18A_uc010bun.2_RNA|FAM18A_uc010uyu.1_RNA|FAM18A_uc002dad.3_RNA|FAM18A_uc002daf.1_RNA|FAM18A_uc002dae.1_Missense_Mutation_p.E32K	NM_001079512	NP_001072980	A6NH52	FA18A_HUMAN	hypothetical protein LOC780776	96						integral to membrane					0						TTCCCATCTTCATCTATCTGG	0.498													13	9					0	0	0.00244969	0	0
NOMO1	23420	broad.mit.edu	37	16	14975490	14975490	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:14975490G>A	uc002dcv.2	+	25	3041	c.2975G>A	c.(2974-2976)GGA>GAA	p.G992E		NM_014287	NP_055102	Q15155	NOMO1_HUMAN	nodal modulator 1 precursor	992	Extracellular (Potential).					integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			ovary(1)	1						AGCATTTACGGAGAAGACACC	0.502													61	118					0	0	0.00361006	0	0
ABCC6	368	broad.mit.edu	37	16	16315560	16315560	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:16315560G>A	uc002den.3	-	2	202	c.165C>T	c.(163-165)ATC>ATT	p.I55I	ABCC6_uc010bvo.2_RNA|ABCC6_uc010uzz.1_Silent_p.I55I|ABCC6_uc002deo.3_Silent_p.I55I	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	55	Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		CATGGTGGTGGATGAAGAGGA	0.617													8	22					0	0	0.000978159	0	0
SMG1	23049	broad.mit.edu	37	16	18856882	18856882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:18856882C>T	uc002dfm.2	-	39	6451	c.6088G>A	c.(6088-6090)GCT>ACT	p.A2030T	SMG1_uc010bwb.2_Missense_Mutation_p.A1890T|SMG1_uc010bwa.2_Missense_Mutation_p.A761T|SMG1_uc002dfo.3_Missense_Mutation_p.A328T	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	2030					DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						TCTGCAGGAGCCGCTGTGATA	0.438													38	92					0	0	0.00195071	0	0
SYT17	51760	broad.mit.edu	37	16	19236082	19236082	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:19236082A>G	uc002dfw.2	+	7	1481	c.1150A>G	c.(1150-1152)ATT>GTT	p.I384V	SYT17_uc002dfx.2_Missense_Mutation_p.I323V|SYT17_uc002dfy.2_Missense_Mutation_p.I380V|SYT17_uc002dfv.1_Missense_Mutation_p.I323V	NM_016524	NP_057608	Q9BSW7	SYT17_HUMAN	B/K protein	384	C2 2.					membrane|synaptic vesicle	transporter activity			ovary(1)	1						AAGGGGCACAATTGATCCTTT	0.433													28	60					0	0	0.00127121	0	0
TMC5	79838	broad.mit.edu	37	16	19451968	19451968	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:19451968G>A	uc002dgc.3	+	3	1357	c.608G>A	c.(607-609)GGA>GAA	p.G203E	TMC5_uc010vaq.1_Missense_Mutation_p.G203E|TMC5_uc002dgb.3_Missense_Mutation_p.G203E|TMC5_uc010var.1_Missense_Mutation_p.G203E	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	203	Extracellular (Potential).					integral to membrane				skin(1)	1						GACTCTCTGGGAAAGCCTGAT	0.473													32	40					0	0	0.00283554	0	0
GP2	2813	broad.mit.edu	37	16	20335551	20335551	+	Missense_Mutation	SNP	G	A	A	rs140222432		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:20335551G>A	uc002dgv.2	-	3	205	c.122C>T	c.(121-123)TCG>TTG	p.S41L	GP2_uc002dgw.2_Missense_Mutation_p.S41L|GP2_uc002dgx.2_Intron|GP2_uc002dgy.2_Intron	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	41						anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						CAGCCCATACGAACTGGCTTC	0.532													15	36					0	0	0.000566183	0	0
PDILT	204474	broad.mit.edu	37	16	20373815	20373815	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:20373815C>T	uc002dhc.1	-	10	1550	c.1327G>A	c.(1327-1329)GCC>ACC	p.A443T		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	443	Thioredoxin.				cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						TCGATCTTGGCAATGATAATT	0.483													19	31					0	0	0.00121646	0	0
ACSM5	54988	broad.mit.edu	37	16	20442382	20442382	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:20442382C>T	uc002dhe.2	+	9	1340	c.1193C>T	c.(1192-1194)CCC>CTC	p.P398L		NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	398					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						GCGTCCCCACCCTACGATGTG	0.567													42	98					0	0	0.00285205	0	0
ACSM2B	348158	broad.mit.edu	37	16	20554584	20554584	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:20554584C>T	uc002dhj.3	-	12	1492	c.1282G>A	c.(1282-1284)GAA>AAA	p.E428K	ACSM2B_uc002dhk.3_Missense_Mutation_p.E428K|ACSM2B_uc010bwf.1_Missense_Mutation_p.E428K	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	428					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						TCGGGATTTTCCTGGTGACCA	0.483													27	72					0	0	0.00106085	0	0
DNAH3	55567	broad.mit.edu	37	16	20946785	20946786	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:20946785_20946786GG>AA	uc010vbe.1	-	61	11881_11882	c.11881_11882CC>TT	c.(11881-11883)CCT>TTT	p.P3961F	DNAH3_uc010vbd.1_Missense_Mutation_p.P1396F	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3961					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AAATACCACAGGGGGCCCCTTG	0.416													12	18					0	0	6.4e-05	0	0
VWA3A	146177	broad.mit.edu	37	16	22126769	22126769	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:22126769C>T	uc010vbq.1	+	9	887	c.791C>T	c.(790-792)TCC>TTC	p.S264F	VWA3A_uc010bxc.2_Missense_Mutation_p.S251F	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	264						extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		GGACTGGATTCCCTGGTGGCC	0.468													14	8					0	0	0.00316338	0	0
EEF2K	29904	broad.mit.edu	37	16	22255972	22255972	+	Nonsense_Mutation	SNP	C	T	T	rs137985480		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:22255972C>T	uc002dki.2	+	3	753	c.268C>T	c.(268-270)CAG>TAG	p.Q90*	EEF2K_uc002dkh.2_RNA	NM_013302	NP_037434	O00418	EF2K_HUMAN	elongation factor-2 kinase	90					insulin receptor signaling pathway|translational elongation	cytosol	ATP binding|calcium ion binding|calmodulin binding|elongation factor-2 kinase activity|translation factor activity, nucleic acid binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(48;0.0223)		GCACGCAATCCAGAAGGCCAA	0.597													20	20					0	0	0.00229938	0	0
SCNN1B	6338	broad.mit.edu	37	16	23366796	23366796	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:23366796G>A	uc002dln.2	+	4	938	c.762G>A	c.(760-762)GAG>GAA	p.E254E		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	254	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	TCGGAGCTGAGCCCTGCAACT	0.468													12	27					0	0	0.00185496	0	0
SLC5A11	115584	broad.mit.edu	37	16	24909297	24909297	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:24909297G>A	uc002dmu.2	+	10	1105	c.873G>A	c.(871-873)GTG>GTA	p.V291V	SLC5A11_uc002dms.2_Silent_p.V227V|SLC5A11_uc010vcd.1_Silent_p.V256V|SLC5A11_uc002dmt.2_Missense_Mutation_p.D159N|SLC5A11_uc010vce.1_Silent_p.V221V|SLC5A11_uc010bxt.2_Silent_p.V227V	NM_052944	NP_443176	Q8WWX8	SC5AB_HUMAN	solute carrier family 5 (sodium/glucose	291	Helical; (Potential).				apoptosis|carbohydrate transport|sodium ion transport	integral to membrane|plasma membrane	polyol transmembrane transporter activity|symporter activity			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0365)		TTTTCCAGGTGATTGTCCAGC	0.373													50	132					0	0	0.00361006	0	0
ARHGAP17	55114	broad.mit.edu	37	16	24979684	24979684	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:24979684G>A	uc002dnb.2	-	6	542	c.449C>T	c.(448-450)TCA>TTA	p.S150L	ARHGAP17_uc002dnc.2_Missense_Mutation_p.S150L|ARHGAP17_uc010vcf.1_5'UTR|ARHGAP17_uc002dnf.2_Missense_Mutation_p.S58L|ARHGAP17_uc002dng.1_Missense_Mutation_p.S150L	NM_001006634	NP_001006635	Q68EM7	RHG17_HUMAN	nadrin isoform 1	150	BAR.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|tight junction	GTPase activator activity|SH3 domain binding				0				GBM - Glioblastoma multiforme(48;0.0407)		GGCTCTGACTGAATCCCAGTC	0.493													25	50					0	0	0.00178596	0	0
XPO6	23214	broad.mit.edu	37	16	28113227	28113227	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:28113227A>T	uc002dpa.1	-	22	3487	c.2986T>A	c.(2986-2988)TTT>ATT	p.F996I	XPO6_uc002dpb.1_Missense_Mutation_p.F982I|XPO6_uc010vcp.1_Missense_Mutation_p.F996I	NM_015171	NP_055986	Q96QU8	XPO6_HUMAN	exportin 6	996					protein export from nucleus		protein binding|protein transporter activity			ovary(1)|skin(1)	2						TTTTGTTTAAAAAGGTGGATG	0.468													15	43					0	0	0.00400662	0	0
XPO6	23214	broad.mit.edu	37	16	28167786	28167786	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:28167786G>A	uc002dpa.1	-	7	1207	c.706C>T	c.(706-708)CCC>TCC	p.P236S	XPO6_uc002dpb.1_Missense_Mutation_p.P222S|XPO6_uc010vcp.1_Missense_Mutation_p.P236S	NM_015171	NP_055986	Q96QU8	XPO6_HUMAN	exportin 6	236					protein export from nucleus		protein binding|protein transporter activity			ovary(1)|skin(1)	2						TCAAGGATGGGAATTGGCTGA	0.473													29	62					0	0	0.0024448	0	0
SULT1A1	6817	broad.mit.edu	37	16	28619845	28619845	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:28619845G>A	uc002dqi.2	-	2	701	c.228C>T	c.(226-228)TTC>TTT	p.F76F	uc010vct.1_Intron|SULT1A1_uc002dqj.2_Silent_p.F76F|SULT1A1_uc002dqk.2_Silent_p.F76F|SULT1A1_uc002dql.2_Silent_p.F76F|SULT1A1_uc002dqm.2_Intron|SULT1A1_uc002dqn.2_Silent_p.F167F|SULT1A1_uc002dqo.2_Silent_p.F76F|SULT1A1_uc002dqp.2_Silent_p.F76F	NM_177534	NP_803878	P50225	ST1A1_HUMAN	sulfotransferase family, cytosolic, 1A,	76					3'-phosphoadenosine 5'-phosphosulfate metabolic process|catecholamine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						GCACCCGCATGAAGATGGGAG	0.592													31	13					0	0	0.00283554	0	0
SPN	6693	broad.mit.edu	37	16	29675288	29675288	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:29675288C>T	uc002dtm.2	+	2	375	c.239C>T	c.(238-240)TCC>TTC	p.S80F	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SPN_uc002dtn.2_Missense_Mutation_p.S80F|SPN_uc010bzd.2_RNA	NM_001030288	NP_001025459	P16150	LEUK_HUMAN	sialophorin precursor	80	Extracellular (Potential).				blood coagulation|cellular defense response|chemotaxis|defense response to bacterium|establishment or maintenance of cell polarity|immune response|leukocyte migration|negative regulation of cell adhesion|positive regulation of tumor necrosis factor biosynthetic process	extracellular space|integral to plasma membrane	bacterial cell surface binding|transmembrane receptor activity			central_nervous_system(2)	2						CTTTGGACTTCCATTGGTGCC	0.532													62	52					0	0	0.00361006	0	0
FBRS	64319	broad.mit.edu	37	16	30680789	30680789	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:30680789C>T	uc002dzd.3	+	12	1469	c.1206C>T	c.(1204-1206)CAC>CAT	p.H402H	FBRS_uc002dzc.3_Silent_p.H314H	NM_001105079	NP_001098549	Q9HAH7	FBRS_HUMAN	fibrosin	402	Pro-rich.									ovary(1)	1			Colorectal(24;0.103)			AACCTGCTCACCCCTTGCTCT	0.687													35	118					0	0	0.00128727	0	0
SRCAP	10847	broad.mit.edu	37	16	30724869	30724869	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:30724869C>T	uc002dze.1	+	16	2715	c.2330C>T	c.(2329-2331)CCC>CTC	p.P777L	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.P634L|SRCAP_uc010bzz.1_Missense_Mutation_p.P347L	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	777	Helicase ATP-binding.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			ACAGGAACTCCCTTGCAGAAC	0.512													31	68					0	0	0.000953801	0	0
SRCAP	10847	broad.mit.edu	37	16	30736199	30736199	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:30736199C>T	uc002dze.1	+	25	5839	c.5454C>T	c.(5452-5454)TCC>TCT	p.S1818S	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Silent_p.S1613S|SRCAP_uc010bzz.1_Silent_p.S1388S	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1818	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			ccccagcTTCCCAGGCATCTT	0.299													13	31					0	0	0.00136819	0	0
PRSS36	146547	broad.mit.edu	37	16	31157129	31157129	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:31157129C>T	uc002ebd.2	-	6	760	c.701G>A	c.(700-702)GGC>GAC	p.G234D	PRSS36_uc010vff.1_Missense_Mutation_p.G9D|PRSS36_uc010vfg.1_Missense_Mutation_p.G234D|PRSS36_uc010vfh.1_Missense_Mutation_p.G234D	NM_173502	NP_775773	Q5K4E3	POLS2_HUMAN	protease, serine, 36 precursor	234	Peptidase S1 1.				proteolysis	cytoplasm|proteinaceous extracellular matrix	serine-type endopeptidase activity			ovary(1)	1						GTCCCTGCGGCCCTCTGGGTA	0.607													44	37					0	0	0.00321405	0	0
ITGAD	3681	broad.mit.edu	37	16	31426181	31426181	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:31426181G>A	uc002ebv.1	+	18	2201	c.2152G>A	c.(2152-2154)GAT>AAT	p.D718N	ITGAD_uc010cap.1_Missense_Mutation_p.D719N	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	718	Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						TCTCTCTCAGGATTGTGTGGA	0.587													80	51					0	0	0.00361006	0	0
ITGAD	3681	broad.mit.edu	37	16	31429642	31429642	+	Silent	SNP	C	T	T	rs139262186		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:31429642C>T	uc002ebv.1	+	22	2686	c.2637C>T	c.(2635-2637)TTC>TTT	p.F879F	ITGAD_uc010cap.1_Silent_p.F880F	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	879	Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						TAGTCACATTCGATGTCTCCT	0.562													19	50					0	0	0.00332997	0	0
ZNF267	10308	broad.mit.edu	37	16	31926270	31926270	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:31926270C>T	uc002ecs.3	+	4	909	c.700C>T	c.(700-702)CAT>TAT	p.H234Y		NM_003414	NP_003405	Q14586	ZN267_HUMAN	zinc finger protein 267	234					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)|skin(1)	4						CCCTAAAAATCATCAGGAAAA	0.308													8	13					0	0	0.00307968	0	0
MYLK3	91807	broad.mit.edu	37	16	46763512	46763512	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:46763512C>T	uc002eei.3	-	6	1772	c.1656G>A	c.(1654-1656)AAG>AAA	p.K552K	MYLK3_uc010vge.1_Silent_p.K211K|MYLK3_uc002eej.1_Silent_p.K211K	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	myosin light chain kinase 3	552	Protein kinase.				cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			stomach(2)|skin(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	7		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				TCACCCGGTCCTTGGCGCTCT	0.612													16	42					0	0	0.000958276	0	0
ABCC11	85320	broad.mit.edu	37	16	48250034	48250034	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:48250034G>A	uc002eff.1	-	6	1292	c.942C>T	c.(940-942)TTC>TTT	p.F314F	ABCC11_uc002efg.1_Silent_p.F314F|ABCC11_uc002efh.1_Silent_p.F314F|ABCC11_uc010vgk.1_5'Flank|ABCC11_uc010vgl.1_Silent_p.F314F	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	314	ABC transmembrane type-1 1.|Helical; (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				CCGCCAGTGGGAAAACCAGGA	0.473									Cerumen_Type				24	83					0	0	0.00395357	0	0
LONP2	83752	broad.mit.edu	37	16	48290548	48290548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:48290548C>T	uc002efi.1	+	3	585	c.496C>T	c.(496-498)CCT>TCT	p.P166S	LONP2_uc010vgm.1_Intron|LONP2_uc002efj.1_Intron	NM_031490	NP_113678	Q86WA8	LONP2_HUMAN	peroxisomal LON protease-like	166	Lon.				misfolded or incompletely synthesized protein catabolic process|protein targeting to peroxisome|signal peptide processing	nucleoid|peroxisomal matrix	ATP binding|ATP-dependent peptidase activity|enzyme binding|sequence-specific DNA binding|serine-type endopeptidase activity				0						TATGTCTGTCCCTGCAGTTGC	0.348													24	76					0	0	0.00332997	0	0
LONP2	83752	broad.mit.edu	37	16	48337130	48337130	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:48337130C>T	uc002efi.1	+	11	1798	c.1709C>T	c.(1708-1710)GCC>GTC	p.A570V	LONP2_uc010vgm.1_RNA|LONP2_uc002efj.1_Missense_Mutation_p.A526V	NM_031490	NP_113678	Q86WA8	LONP2_HUMAN	peroxisomal LON protease-like	570					misfolded or incompletely synthesized protein catabolic process|protein targeting to peroxisome|signal peptide processing	nucleoid|peroxisomal matrix	ATP binding|ATP-dependent peptidase activity|enzyme binding|sequence-specific DNA binding|serine-type endopeptidase activity				0						AAACTTGGGGCCATTTGCCGA	0.438													24	54					0	0	0.000720815	0	0
ZNF423	23090	broad.mit.edu	37	16	49671905	49671905	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:49671905G>A	uc002efs.2	-	5	1456	c.1158C>T	c.(1156-1158)TCC>TCT	p.S386S	ZNF423_uc010vgn.1_Silent_p.S269S	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	386					cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				GCTTCAAGGTGGAGTCCGGGG	0.637													8	32					0	0	0.000274275	0	0
NKD1	85407	broad.mit.edu	37	16	50667569	50667569	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:50667569G>A	uc002egg.1	+	10	1514	c.1290G>A	c.(1288-1290)GAG>GAA	p.E430E		NM_033119	NP_149110	Q969G9	NKD1_HUMAN	naked cuticle homolog 1	430					Wnt receptor signaling pathway	cytoplasm|plasma membrane	calcium ion binding|protein binding				0		all_cancers(37;0.229)		GBM - Glioblastoma multiforme(240;0.243)		TGGGGCGGGAGCACCTGCGGG	0.587													5	6					0	0	0.00116845	0	0
NOD2	64127	broad.mit.edu	37	16	50745455	50745455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:50745455C>T	uc002egm.1	+	4	1738	c.1633C>T	c.(1633-1635)CCC>TCC	p.P545S	NOD2_uc010cbk.1_Missense_Mutation_p.P518S|NOD2_uc002egl.1_Missense_Mutation_p.P323S|NOD2_uc010cbl.1_Missense_Mutation_p.P323S|NOD2_uc010cbm.1_Missense_Mutation_p.P323S|NOD2_uc010cbn.1_RNA|NOD2_uc010cbo.1_RNA|NOD2_uc010cbp.1_5'Flank|NOD2_uc010cbq.1_5'Flank|NOD2_uc010cbr.1_5'Flank	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	545	NACHT.				activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				GGGCCGCCTCCCCACCCTCCT	0.622													23	15					0	0	0.00395357	0	0
NOD2	64127	broad.mit.edu	37	16	50756591	50756591	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:50756591G>A	uc002egm.1	+	8	2878	c.2773G>A	c.(2773-2775)GAT>AAT	p.D925N	NOD2_uc010cbl.1_Missense_Mutation_p.D675N|NOD2_uc010cbm.1_Missense_Mutation_p.D675N|NOD2_uc010cbn.1_RNA|NOD2_uc010cbo.1_RNA|NOD2_uc010cbp.1_RNA|NOD2_uc010cbq.1_Missense_Mutation_p.D63N|NOD2_uc010cbr.1_RNA|NOD2_uc010vgq.1_5'UTR	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	925					activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				AGCCTTGGGTGATCACCAGAG	0.552													81	193					0	0	0.00361006	0	0
SALL1	6299	broad.mit.edu	37	16	51171359	51171359	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:51171359G>A	uc010vgs.1	-	3	3670	c.3639C>T	c.(3637-3639)TTC>TTT	p.F1213F	SALL1_uc010vgr.1_Silent_p.F1116F|SALL1_uc010cbv.2_Silent_p.F65F	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1213					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			ACATTTCTGGGAACTTGACGG	0.567													11	34					0	0	0.000673444	0	0
SALL1	6299	broad.mit.edu	37	16	51173298	51173298	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:51173298C>T	uc010vgs.1	-	2	2866	c.2835G>A	c.(2833-2835)GAG>GAA	p.E945E	SALL1_uc010vgr.1_Silent_p.E848E|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	945					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GTGGTTTCTCCTCAATGCTGG	0.552													10	25					0	0	0.00136819	0	0
SALL1	6299	broad.mit.edu	37	16	51174598	51174598	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:51174598G>A	uc010vgs.1	-	2	1566	c.1535C>T	c.(1534-1536)CCT>CTT	p.P512L	SALL1_uc010vgr.1_Missense_Mutation_p.P415L|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	512					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CTCAGGCACAGGATAGGGGTT	0.512													30	60					0	0	0.00375469	0	0
SALL1	6299	broad.mit.edu	37	16	51175853	51175853	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:51175853G>A	uc010vgs.1	-	2	311	c.280C>T	c.(280-282)CCT>TCT	p.P94S	SALL1_uc010vgr.1_5'UTR|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	94					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TGTTCATCAGGATTATCAGGA	0.448													33	76					0	0	0.00375469	0	0
CHD9	80205	broad.mit.edu	37	16	53357974	53357974	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:53357974C>T	uc002ehb.2	+	38	8025	c.7861C>T	c.(7861-7863)CCC>TCC	p.P2621S	CHD9_uc002egy.2_Missense_Mutation_p.P2605S|CHD9_uc002ehc.2_Missense_Mutation_p.P2606S|CHD9_uc002ehf.2_Missense_Mutation_p.P1719S|CHD9_uc010cbw.2_Missense_Mutation_p.P687S	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	2621					cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				TCTCACTGGTCCCGTTGTGAG	0.433													29	74					0	0	0.00327116	0	0
IRX6	79190	broad.mit.edu	37	16	55363139	55363139	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:55363139C>T	uc002ehy.2	+	5	1782	c.1249C>T	c.(1249-1251)CTG>TTG	p.L417L	IRX6_uc002ehx.2_Silent_p.L417L	NM_024335	NP_077311	P78412	IRX6_HUMAN	iroquois homeobox protein 6	417						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(5)|ovary(1)	6						CAAGTTTGCCCTGCAGGGACT	0.642													22	55					0	0	0.00278032	0	0
LPCAT2	54947	broad.mit.edu	37	16	55579712	55579712	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:55579712C>T	uc002eie.3	+	9	1099	c.918C>T	c.(916-918)GTC>GTT	p.V306V	LPCAT2_uc002eic.2_Silent_p.V36V	NM_017839	NP_060309	Q7L5N7	PCAT2_HUMAN	lysophosphatidylcholine acyltransferase 2	306	Lumenal (Potential).				cellular membrane organization|platelet activating factor biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|Golgi stack|integral to membrane	1-acylglycerophosphocholine O-acyltransferase activity|1-alkylglycerophosphocholine O-acetyltransferase activity|calcium ion binding				0						CCAATAAAGTCCGGAATTTAA	0.289													19	54					0	0	0.00074312	0	0
SLC12A3	6559	broad.mit.edu	37	16	56906280	56906280	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:56906280C>T	uc010ccm.2	+	7	899	c.870C>T	c.(868-870)TTC>TTT	p.F290F	SLC12A3_uc002ekd.3_Silent_p.F290F|SLC12A3_uc010ccn.2_Silent_p.F289F	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	290	Helical; (Potential).				sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	TGCTGTTCTTCCTTGTCATCA	0.552													8	43					0	0	0.000274275	0	0
SLC12A3	6559	broad.mit.edu	37	16	56947280	56947280	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:56947280G>A	uc010ccm.2	+	26	3058	c.3029G>A	c.(3028-3030)GGA>GAA	p.G1010E	SLC12A3_uc002ekd.3_Missense_Mutation_p.G1019E|SLC12A3_uc010ccn.2_Missense_Mutation_p.G1018E	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	1010	Cytoplasmic (Potential).				sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	CTGATCCGAGGAAACCAGGAA	0.552													39	82					0	0	0.00222228	0	0
NLRC5	84166	broad.mit.edu	37	16	57059746	57059746	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:57059746G>A	uc002ekk.1	+	6	1116	c.891G>A	c.(889-891)AAG>AAA	p.K297K	NLRC5_uc010ccq.1_RNA|NLRC5_uc002ekn.2_Silent_p.K102K|NLRC5_uc002ekl.2_Silent_p.K102K|NLRC5_uc002ekm.2_Silent_p.K102K|NLRC5_uc010ccr.1_RNA	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	297	NACHT.				defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				ACCTGGAGAAGAACGCTGACC	0.552													27	67					0	0	0.00178596	0	0
CNGB1	1258	broad.mit.edu	37	16	57965772	57965772	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:57965772C>T	uc002emt.2	-	17	1448	c.1383G>A	c.(1381-1383)ACG>ACA	p.T461T	CNGB1_uc010cdh.2_Silent_p.T455T	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	461	Cytoplasmic (Potential).				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						GGTGCTGTTTCGTGGCAGGCA	0.547													20	29					0	0	0.00278032	0	0
SLC38A7	55238	broad.mit.edu	37	16	58701363	58701364	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:58701363_58701364GG>AA	uc002eod.1	-	12	1707_1708	c.1314_1315CC>TT	c.(1312-1317)GTCCTC>GTTTTC	p.L439F	SLC38A7_uc002eob.1_RNA|SLC38A7_uc002eoc.1_Missense_Mutation_p.S304F|SLC38A7_uc010vil.1_Missense_Mutation_p.L350F	NM_018231	NP_060701	Q9NVC3	S38A7_HUMAN	solute carrier family 38, member 7	439	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane				ovary(1)	1						GTGACCAAGAGGACTCCGTAGC	0.535													11	39					0	0	6.4e-05	0	0
CDH11	1009	broad.mit.edu	37	16	64981796	64981796	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:64981796G>A	uc002eoi.2	-	13	2535	c.2101C>T	c.(2101-2103)CAG>TAG	p.Q701*	CDH11_uc010cdn.2_RNA|CDH11_uc002eoj.2_3'UTR|CDH11_uc010vin.1_Nonsense_Mutation_p.Q575*	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	701	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		GGCATGTACTGATACTCAGGT	0.527			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			32	71					0	0	0.00283554	0	0
CDH11	1009	broad.mit.edu	37	16	64984894	64984894	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:64984894C>T	uc002eoi.2	-	12	2104	c.1670G>A	c.(1669-1671)CGT>CAT	p.R557H	CDH11_uc010cdn.2_RNA|CDH11_uc002eoj.2_Missense_Mutation_p.R557H|CDH11_uc010vin.1_Missense_Mutation_p.R431H	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	557	Cadherin 5.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		GAACCCTCCACGCCGGGCGTA	0.602			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			7	29					0	0	0.00198382	0	0
FHOD1	29109	broad.mit.edu	37	16	67263792	67263792	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:67263792C>T	uc002esl.2	-	21	3428	c.3316G>A	c.(3316-3318)GAG>AAG	p.E1106K	LRRC29_uc002esf.2_5'Flank|LRRC29_uc002esg.2_5'Flank|LRRC29_uc010vjg.1_5'Flank|FHOD1_uc002esk.2_Missense_Mutation_p.E165K|FHOD1_uc010ced.2_Missense_Mutation_p.E913K	NM_013241	NP_037373	Q9Y613	FHOD1_HUMAN	formin homology 2 domain containing 1	1106					actin cytoskeleton organization	cytoplasm|cytoskeleton|nucleus	actin binding			breast(2)|ovary(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.000691)|Epithelial(162;0.00462)|all cancers(182;0.0434)		TCCATGATCTCATCTGATGTA	0.572													26	52					0	0	0.000720815	0	0
SLC9A5	6553	broad.mit.edu	37	16	67293800	67293800	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:67293800C>T	uc002esm.2	+	12	1856	c.1793C>T	c.(1792-1794)GCT>GTT	p.A598V	SLC9A5_uc010cee.2_Missense_Mutation_p.A303V|SLC9A5_uc010vji.1_Missense_Mutation_p.A102V|uc002esn.1_5'Flank	NM_004594	NP_004585	Q14940	SL9A5_HUMAN	solute carrier family 9 (sodium/hydrogen	598					regulation of pH	integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			ovary(1)|pancreas(1)	2		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)		CGTGAGGATGCTGTGATGCAT	0.612													20	11					0	0	0.00121646	0	0
KCTD19	146212	broad.mit.edu	37	16	67337157	67337157	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:67337157G>A	uc002esu.2	-	4	586	c.535C>T	c.(535-537)CTA>TTA	p.L179L	KCTD19_uc002est.2_5'UTR|KCTD19_uc010vjj.1_5'UTR	NM_001100915	NP_001094385	Q17RG1	KCD19_HUMAN	potassium channel tetramerisation domain	179						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0311)|Epithelial(162;0.0906)		ACCAGGTCTAGGGGCAGGAAG	0.572													10	30					0	0	0.000673444	0	0
LRRC36	55282	broad.mit.edu	37	16	67381445	67381445	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:67381445T>A	uc002esv.2	+	4	458	c.439T>A	c.(439-441)TTT>ATT	p.F147I	LRRC36_uc002esw.2_RNA|LRRC36_uc010ceh.2_Missense_Mutation_p.F26I|LRRC36_uc002esx.2_Missense_Mutation_p.F26I|LRRC36_uc010vjk.1_Missense_Mutation_p.F26I|LRRC36_uc010vjl.1_5'UTR|LRRC36_uc002esy.2_5'UTR	NM_018296	NP_060766	Q1X8D7	LRC36_HUMAN	leucine rich repeat containing 36 isoform 1	147											0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0669)|Epithelial(162;0.161)		CAAGCTGCATTTTAGTCAGTT	0.378													30	51					0	0	0.00209593	0	0
HYDIN	54768	broad.mit.edu	37	16	70841794	70841794	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:70841794C>T	uc002ezr.2	-	86	15180	c.15052G>A	c.(15052-15054)GGA>AGA	p.G5018R	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	5019										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AGAGCCATTCCAAAGAGGGGG	0.537													22	58					0	0	0.00395357	0	0
ZNF19	7567	broad.mit.edu	37	16	71510036	71510036	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:71510036G>A	uc010cgc.1	-	6	920	c.414C>T	c.(412-414)CAC>CAT	p.H138H	ZNF23_uc002fai.2_Intron|ZNF19_uc002fak.1_Silent_p.H126H|ZNF19_uc002fal.1_Silent_p.H126H|ZNF19_uc002fam.1_Silent_p.H138H	NM_006961	NP_008892	P17023	ZNF19_HUMAN	zinc finger protein 19	138						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(137;0.00965)		BRCA - Breast invasive adenocarcinoma(221;0.0161)|Kidney(780;0.0598)		GGATGTCCTGGTGCTTTTCCA	0.458													14	28					0	0	0.00185496	0	0
TAT	6898	broad.mit.edu	37	16	71602167	71602167	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:71602167G>A	uc002fap.2	-	12	1344	c.1245C>T	c.(1243-1245)TTC>TTT	p.F415F		NM_000353	NP_000344	P17735	ATTY_HUMAN	tyrosine aminotransferase	415					2-oxoglutarate metabolic process|glutamate metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-tyrosine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(2)	2		Ovarian(137;0.125)		Kidney(780;0.0157)	L-Glutamic Acid(DB00142)|L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Pyridoxal Phosphate(DB00114)	CCACTCGGATGAAATTCGGGT	0.522													17	37					0	0	0.000566183	0	0
ZFHX3	463	broad.mit.edu	37	16	72992847	72992847	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:72992847G>A	uc002fck.2	-	2	1871	c.1198C>T	c.(1198-1200)CTG>TTG	p.L400L	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	400					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				AGGTTCAACAGGGTGCTGGGG	0.622													31	70					0	0	0.00127121	0	0
GLG1	2734	broad.mit.edu	37	16	74516938	74516938	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:74516938G>A	uc002fcy.3	-	10	1706	c.1656C>T	c.(1654-1656)TTC>TTT	p.F552F	GLG1_uc002fcx.2_Silent_p.F552F|GLG1_uc002fcw.3_Silent_p.F541F|GLG1_uc002fcz.3_Intron	NM_001145667	NP_001139139	Q92896	GSLG1_HUMAN	golgi apparatus protein 1 isoform 3	552	Extracellular (Potential).|Cys-rich GLG1 8.					Golgi membrane|integral to membrane	receptor binding			ovary(1)|breast(1)	2						CCCGGGAGATGAAATACTGCA	0.393													37	79					0	0	0.00128727	0	0
CHST5	23563	broad.mit.edu	37	16	75563490	75563490	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:75563490G>A	uc002fei.2	-	3	2188	c.793C>T	c.(793-795)CGC>TGC	p.R265C	CHST5_uc002fej.1_Missense_Mutation_p.R271C	NM_024533	NP_078809	Q9GZS9	CHST5_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	265	Lumenal (Potential).				N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						CACACCTCGCGAATCAGGCGC	0.716													19	46					0	0	0.00074312	0	0
ADAT1	23536	broad.mit.edu	37	16	75646739	75646739	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:75646739G>A	uc002feo.1	-	7	547	c.445C>T	c.(445-447)CCG>TCG	p.P149S	ADAT1_uc002fep.1_5'UTR	NM_012091	NP_036223	Q9BUB4	ADAT1_HUMAN	adenosine deaminase, tRNA-specific 1	149	A to I editase.				tRNA processing		metal ion binding|RNA binding|tRNA-specific adenosine deaminase activity			ovary(1)|skin(1)	2						TCAAGCATCGGAATGATGGAG	0.353													21	35					0	0	0.00121646	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76555069	76555069	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:76555069G>A	uc002feu.1	+	18	2783	c.2398G>A	c.(2398-2400)GAG>AAG	p.E800K	CNTNAP4_uc002fev.1_Missense_Mutation_p.E664K|CNTNAP4_uc010chb.1_Missense_Mutation_p.E727K|CNTNAP4_uc002fex.1_Missense_Mutation_p.E803K	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	800	Extracellular (Potential).|Laminin G-like 3.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						CTTTGATACCGAGGCTTCATA	0.323													43	93					0	0	0.00361006	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77317962	77317962	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:77317962G>A	uc002ffc.3	-	23	3976	c.3557C>T	c.(3556-3558)CCA>CTA	p.P1186L		NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1186	PLAC.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TACGCAGGATGGATCCTCTAA	0.323													14	54					0	0	0.00316338	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77359872	77359872	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:77359872G>A	uc002ffc.3	-	13	2342	c.1923C>T	c.(1921-1923)AAC>AAT	p.N641N	ADAMTS18_uc010chc.1_Silent_p.N229N|ADAMTS18_uc002ffe.1_Silent_p.N337N	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	641	TSP type-1 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						CATTGCAAGGGTTAATATTGC	0.393													9	19					0	0	0.000274275	0	0
VAT1L	57687	broad.mit.edu	37	16	77859274	77859274	+	Silent	SNP	C	T	T	rs149678482	byFrequency	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:77859274C>T	uc002ffg.1	+	3	592	c.495C>T	c.(493-495)TTC>TTT	p.F165F		NM_020927	NP_065978	Q9HCJ6	VAT1L_HUMAN	vesicle amine transport protein 1 homolog (T.	165							oxidoreductase activity|zinc ion binding			central_nervous_system(1)	1						CCATGAACTTCGTCACAGCCT	0.552													15	4					0	0	0.00244969	0	0
CLEC3A	10143	broad.mit.edu	37	16	78064625	78064625	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:78064625G>A	uc002ffh.3	+	3	562	c.481G>A	c.(481-483)GGT>AGT	p.G161S		NM_005752	NP_005743	O75596	CLC3A_HUMAN	C-type lectin domain family 3 member A	161	C-type lectin.				skeletal system development	extracellular region	sugar binding				0						ACAGCCTAACGGTGGCAAGCG	0.527													21	48					0	0	0.00229938	0	0
CDYL2	124359	broad.mit.edu	37	16	80667001	80667001	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:80667001C>T	uc002ffs.2	-	3	854	c.749G>A	c.(748-750)CGA>CAA	p.R250Q		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	250						nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						AACGATGTCTCGAAACCGACA	0.537													22	74					0	0	0.00395357	0	0
PKD1L2	114780	broad.mit.edu	37	16	81151065	81151065	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:81151065G>A	uc002fgh.1	-	41	6684	c.6684C>T	c.(6682-6684)ATC>ATT	p.I2228I	PKD1L2_uc002fgf.1_Silent_p.I28I|PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	2228	Helical; (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						AGCTGGCCAGGATGATGGCCA	0.612													27	66					0	0	0.00209593	0	0
PKD1L2	114780	broad.mit.edu	37	16	81198262	81198262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:81198262G>A	uc002fgh.1	-	20	3332	c.3332C>T	c.(3331-3333)CCC>CTC	p.P1111L	PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	1111	REJ.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TATATCCACGGGCTCCTGGCC	0.448													32	57					0	0	0.00375469	0	0
SLC38A8	146167	broad.mit.edu	37	16	84070371	84070371	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:84070371G>A	uc002fhg.1	-	2	324	c.324C>T	c.(322-324)TTC>TTT	p.F108F		NM_001080442	NP_001073911	A6NNN8	S38A8_HUMAN	solute carrier family 38, member 8	108	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane					0						GGTTGAGGAGGAAGCAGGCCT	0.627													6	24					0	0	0.00198382	0	0
ZDHHC7	55625	broad.mit.edu	37	16	85010019	85010019	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:85010019G>A	uc002fiq.2	-	8	1210	c.857C>T	c.(856-858)CCC>CTC	p.P286L	ZDHHC7_uc010voi.1_Missense_Mutation_p.P323L|ZDHHC7_uc002fir.1_RNA	NM_017740	NP_060210	Q9NXF8	ZDHC7_HUMAN	zinc finger, DHHC-type containing 7 isoform 2	286						integral to membrane	acyltransferase activity|protein binding|zinc ion binding			large_intestine(1)	1						GCCCACAAAGGGATTCATCCA	0.577													47	30					0	0	0.00361006	0	0
ZC3H18	124245	broad.mit.edu	37	16	88689680	88689680	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:88689680C>T	uc002fky.2	+	10	1921	c.1721C>T	c.(1720-1722)TCC>TTC	p.S574F	ZC3H18_uc010voz.1_Missense_Mutation_p.S598F|ZC3H18_uc010chw.2_RNA	NM_144604	NP_653205	Q86VM9	ZCH18_HUMAN	zinc finger CCCH-type containing 18	574	Ser-rich.					nucleus	nucleic acid binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0542)		CGGTCGCGATCCCGGTCTTCA	0.662													8	27					0	0	0.000442599	0	0
IL17C	27189	broad.mit.edu	37	16	88705457	88705457	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr16:88705457G>A	uc002fla.2	+	2	124	c.75G>A	c.(73-75)AGG>AGA	p.R25R		NM_013278	NP_037410	Q9P0M4	IL17C_HUMAN	interleukin 17C precursor	25					cell surface receptor linked signaling pathway|cell-cell signaling|inflammatory response	extracellular space|soluble fraction	cytokine activity				0				BRCA - Breast invasive adenocarcinoma(80;0.0477)		CCTCCCTCAGGGGGCACCCCC	0.672													38	55					0	0	0.0025221	0	0
RTN4RL1	146760	broad.mit.edu	37	17	1840728	1840728	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:1840728G>A	uc002ftp.2	-	2	407	c.388C>T	c.(388-390)CTC>TTC	p.L130F		NM_178568	NP_848663	Q86UN2	R4RL1_HUMAN	reticulon 4 receptor-like 1 precursor	130	LRR 4.				axon regeneration	anchored to plasma membrane	receptor activity				0						TAGAGGTAGAGGGCGTGAAGC	0.652													18	32					0	0	0.000958276	0	0
SMG6	23293	broad.mit.edu	37	17	2202762	2202762	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:2202762G>A	uc002fub.1	-	2	1340	c.1285C>T	c.(1285-1287)CCT>TCT	p.P429S	SMG6_uc002fud.1_Missense_Mutation_p.P398S	NM_017575	NP_060045	Q86US8	EST1A_HUMAN	Smg-6 homolog, nonsense mediated mRNA decay	429	Interaction with telomeric DNA.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation|telomere maintenance	chromosome, telomeric region|cytosol|nucleolus|telomerase holoenzyme complex	endoribonuclease activity|metal ion binding|protein binding|telomeric DNA binding			central_nervous_system(2)|lung(1)|kidney(1)	4						GGTCCCAAAGGCGCGGACTCT	0.547													36	36					0	0	0.00327116	0	0
PAFAH1B1	5048	broad.mit.edu	37	17	2568691	2568691	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:2568691C>T	uc002fuw.3	+	3	626	c.58C>T	c.(58-60)CGT>TGT	p.R20C	PAFAH1B1_uc010ckb.1_Intron	NM_000430	NP_000421	P43034	LIS1_HUMAN	platelet-activating factor acetylhydrolase,	20	Required for self-association and interaction with PAFAH1B2 and PAFAH1B3 (By similarity).|LisH.|Interaction with NDEL1 (By similarity).|Interaction with NDE1 (By similarity).				acrosome assembly|actin cytoskeleton organization|adult locomotory behavior|brain morphogenesis|corpus callosum morphogenesis|establishment of mitotic spindle orientation|G2/M transition of mitotic cell cycle|hippocampus development|layer formation in cerebral cortex|learning or memory|lipid catabolic process|microtubule organizing center organization|mitotic prometaphase|neuroblast proliferation|neuromuscular process controlling balance|neuron migration|platelet activating factor metabolic process|regulation of Rho GTPase activity|retrograde axon cargo transport|synaptic transmission|vesicle transport along microtubule	astral microtubule|cell cortex|centrosome|cytosol|kinetochore|motile primary cilium|nuclear membrane|perinuclear region of cytoplasm	dynactin binding|heparin binding|microtubule binding|phospholipase binding|phosphoprotein binding|protein homodimerization activity			skin(1)	1						AGATTATCTTCGTTCAAATGG	0.274													21	35					0	0	0.000720815	0	0
ITGAE	3682	broad.mit.edu	37	17	3643113	3643113	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:3643113G>A	uc002fwo.3	-	20	2607	c.2508C>T	c.(2506-2508)GCC>GCT	p.A836A		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	836	Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		AGACGGTGGTGGCCAACTGTA	0.537													44	6					0	0	0.00361006	0	0
ATP2A3	489	broad.mit.edu	37	17	3856645	3856645	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:3856645G>A	uc002fxb.1	-	3	366	c.215C>T	c.(214-216)TCC>TTC	p.S72F	ATP2A3_uc002fwx.1_Missense_Mutation_p.S72F|ATP2A3_uc002fwy.1_Missense_Mutation_p.S72F|ATP2A3_uc002fwz.1_Missense_Mutation_p.S72F|ATP2A3_uc002fxa.1_Missense_Mutation_p.S72F|ATP2A3_uc002fxc.1_Missense_Mutation_p.S72F|ATP2A3_uc002fxd.1_Missense_Mutation_p.S72F	NM_174955	NP_777615	Q93084	AT2A3_HUMAN	ATPase, Ca++ transporting, ubiquitous isoform b	72	Lumenal (By similarity).				ATP biosynthetic process|platelet activation	integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			ovary(3)|breast(1)|central_nervous_system(1)	5				LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766)		ACTTACAAAGGAGACAAGGGC	0.637													18	31					0	0	0.00188189	0	0
USP6	9098	broad.mit.edu	37	17	5066201	5066201	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:5066201G>A	uc002gau.1	+	33	5168	c.2938G>A	c.(2938-2940)GAT>AAT	p.D980N	USP6_uc002gav.1_Missense_Mutation_p.D980N|USP6_uc010ckz.1_Missense_Mutation_p.D663N	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	980					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						CTGTAAAATTGATTGTGGGGA	0.388			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								115	7					0	0	0.00361006	0	0
USP6	9098	broad.mit.edu	37	17	5074166	5074166	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:5074166G>A	uc002gau.1	+	36	6140	c.3910G>A	c.(3910-3912)GAA>AAA	p.E1304K	USP6_uc002gav.1_Missense_Mutation_p.E1304K|USP6_uc010ckz.1_Missense_Mutation_p.E987K	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	1304					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						TGACCAAAGAGAAGACACTCA	0.408			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								21	16					0	0	0.00278032	0	0
PITPNM3	83394	broad.mit.edu	37	17	6367089	6367089	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:6367089C>T	uc002gdd.3	-	17	2420	c.2269G>A	c.(2269-2271)GAC>AAC	p.D757N	PITPNM3_uc010cln.2_Missense_Mutation_p.D721N|PITPNM3_uc010clm.2_Missense_Mutation_p.D240N|PITPNM3_uc002gdc.3_Missense_Mutation_p.D348N	NM_031220	NP_112497	Q9BZ71	PITM3_HUMAN	PITPNM family member 3 isoform 1	757					phosphatidylinositol metabolic process	endomembrane system|integral to membrane	calcium ion binding|lipid binding|phosphatidylinositol transporter activity|receptor tyrosine kinase binding			ovary(2)|central_nervous_system(2)	4				Colorectal(2;0.000372)|READ - Rectum adenocarcinoma(2;0.0276)|LUAD - Lung adenocarcinoma(2;0.0836)|COAD - Colon adenocarcinoma(228;0.185)		ACCTTGGGGTCGCTTCCCATG	0.632													7	3					0	0	0.000274275	0	0
CLDN7	1366	broad.mit.edu	37	17	7164257	7164257	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:7164257C>T	uc002gfm.3	-	2	704	c.271G>A	c.(271-273)GGC>AGC	p.G91S	CLDN7_uc010cmc.2_Missense_Mutation_p.G91S|CLDN7_uc002gfn.3_Missense_Mutation_p.G91S	NM_001307	NP_001298	O95471	CLD7_HUMAN	claudin 7	91	Helical; (Potential).				calcium-independent cell-cell adhesion	integral to membrane|lateral plasma membrane|tight junction	identical protein binding|structural molecule activity			ovary(1)	1						GCCAGGAAGCCCAGCACCAGG	0.632													20	2					0	0	0.00121646	0	0
C17orf74	201243	broad.mit.edu	37	17	7329869	7329869	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:7329869G>T	uc002ggw.2	+	3	632	c.559G>T	c.(559-561)GAG>TAG	p.E187*	FGF11_uc010vtw.1_Intron	NM_175734	NP_783861	Q0P670	CQ074_HUMAN	hypothetical protein LOC201243	187						integral to membrane					0		Prostate(122;0.157)				CTACCTGGAGGAGGAGGACAA	0.587													36	52					3.54909e-21	9.74518e-21	0.00285205	1	0
MYH10	4628	broad.mit.edu	37	17	8449957	8449957	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:8449957G>A	uc002gll.2	-	11	1249	c.1153C>T	c.(1153-1155)CTT>TTT	p.L385F	MYH10_uc002glm.2_Missense_Mutation_p.L395F|MYH10_uc010cnx.2_Missense_Mutation_p.L394F	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	385	Myosin head-like.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						TTCATCCCAAGAAGATGGCAG	0.438													20	22					0	0	0.00188189	0	0
GLP2R	9340	broad.mit.edu	37	17	9757905	9757905	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:9757905C>T	uc002gmd.1	+	5	598	c.598C>T	c.(598-600)CTC>TTC	p.L200F		NM_004246	NP_004237	O95838	GLP2R_HUMAN	glucagon-like peptide 2 receptor precursor	200	Helical; Name=1; (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger|positive regulation of cell proliferation	integral to membrane|plasma membrane				lung(2)|ovary(1)	3					Glucagon recombinant(DB00040)	TCTCACCCTCCTCTTGTTTCT	0.388													50	49					0	0	0.00361006	0	0
GLP2R	9340	broad.mit.edu	37	17	9783831	9783831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:9783831C>T	uc002gmd.1	+	11	1282	c.1282C>T	c.(1282-1284)CAT>TAT	p.H428Y		NM_004246	NP_004237	O95838	GLP2R_HUMAN	glucagon-like peptide 2 receptor precursor	428	Helical; Name=7; (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger|positive regulation of cell proliferation	integral to membrane|plasma membrane				lung(2)|ovary(1)	3					Glucagon recombinant(DB00040)	GAGCTCCTTTCATGTAAGTAG	0.403													20	33					0	0	0.00152264	0	0
RCVRN	5957	broad.mit.edu	37	17	9808255	9808255	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:9808255C>T	uc002gme.1	-	1	430	c.243G>A	c.(241-243)CTG>CTA	p.L81L		NM_002903	NP_002894	P35243	RECO_HUMAN	recoverin	81	EF-hand 2.|1; low affinity (By similarity).				visual perception		calcium ion binding|calcium sensitive guanylate cyclase activator activity				0						CCTTGAAGTCCAGGGTGCCGT	0.602													22	15					0	0	0.00188189	0	0
MYH8	4626	broad.mit.edu	37	17	10300146	10300146	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:10300146C>T	uc002gmm.2	-	31	4431	c.4336G>A	c.(4336-4338)GAT>AAT	p.D1446N	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1446	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TGCTTCTTATCAAGGGCTGCA	0.448									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				31	32					0	0	0.0024448	0	0
MYH8	4626	broad.mit.edu	37	17	10312654	10312654	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:10312654C>T	uc002gmm.2	-	16	1934	c.1839G>A	c.(1837-1839)CAG>CAA	p.Q613Q	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	613	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TTGCAGACTTCTGGTACAGCC	0.443									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				43	7					0	0	0.00285205	0	0
MYH8	4626	broad.mit.edu	37	17	10317277	10317277	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:10317277C>T	uc002gmm.2	-	12	1184	c.1089G>A	c.(1087-1089)GGG>GGA	p.G363G	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	363	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						ATTTCATGTTCCCATAATGCA	0.448									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				48	51					0	0	0.00361006	0	0
MYH4	4622	broad.mit.edu	37	17	10355617	10355617	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:10355617C>T	uc002gmn.2	-	27	3490	c.3379G>A	c.(3379-3381)GAG>AAG	p.E1127K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1127	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CGCTCTGCCTCGATTTCCTCC	0.552													30	27					0	0	0.00209593	0	0
MYH4	4622	broad.mit.edu	37	17	10358326	10358326	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:10358326G>A	uc002gmn.2	-	21	2478	c.2367C>T	c.(2365-2367)ATC>ATT	p.I789I	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	789	IQ.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GAGTGCGCGTGATGAGTTGAG	0.458													22	29					0	0	0.00229938	0	0
MYH4	4622	broad.mit.edu	37	17	10364279	10364279	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:10364279G>A	uc002gmn.2	-	12	1212	c.1101C>T	c.(1099-1101)TTC>TTT	p.F367F	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	367	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GCTTTTGCTTGAATTTCATGT	0.478													23	37					0	0	0.00395357	0	0
MYH1	4619	broad.mit.edu	37	17	10395868	10395868	+	Silent	SNP	G	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:10395868G>C	uc002gmo.2	-	40	5779	c.5685C>G	c.(5683-5685)GTC>GTG	p.V1895V	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1895	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TGGAGAGGTTGACGTTGGATT	0.473													23	30					0	0	0.00278032	0	0
MYH1	4619	broad.mit.edu	37	17	10416015	10416015	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:10416015C>T	uc002gmo.2	-	11	1085	c.991G>A	c.(991-993)GAG>AAG	p.E331K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	331	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GCCATCAACTCTTCTTGGTCA	0.403													37	37					0	0	0.00128727	0	0
MYH2	4620	broad.mit.edu	37	17	10432385	10432385	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:10432385C>T	uc010coi.2	-	27	3494	c.3366G>A	c.(3364-3366)GAG>GAA	p.E1122E	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.E1122E|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1122	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CCTCCAGCTCCTCAATGCGGG	0.552													12	15					0	0	0.00185496	0	0
MYH2	4620	broad.mit.edu	37	17	10439901	10439901	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:10439901C>T	uc010coi.2	-	17	2048	c.1920G>A	c.(1918-1920)AAG>AAA	p.K640K	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.K640K|MYH2_uc010coj.2_Silent_p.K640K	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	640	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TACCACCTTTCTTGGCCCCTC	0.418													5	9					0	0	0.00198382	0	0
MYH3	4621	broad.mit.edu	37	17	10538243	10538243	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:10538243C>T	uc002gmq.1	-	30	4347	c.4270G>A	c.(4270-4272)GGA>AGA	p.G1424R		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	1424	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						TCCACCTCTCCTTGCAGCCTC	0.512													45	57					0	0	0.00361006	0	0
DNAH9	1770	broad.mit.edu	37	17	11726309	11726309	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:11726309G>A	uc002gne.2	+	48	9272	c.9204G>A	c.(9202-9204)CGG>CGA	p.R3068R	DNAH9_uc010coo.2_Silent_p.R2362R	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3068	Stalk (By similarity).|Potential.				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AGACAGAGCGGTTGGAGAACG	0.552													21	0					0	0	0.00152264	0	0
DNAH9	1770	broad.mit.edu	37	17	11872753	11872753	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:11872753G>A	uc002gne.2	+	69	13438	c.13370G>A	c.(13369-13371)GGA>GAA	p.G4457E	DNAH9_uc010coo.2_Missense_Mutation_p.G3675E|DNAH9_uc002gnf.2_Missense_Mutation_p.G769E	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	4457					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AGTCAGCGGGGACCCACCTAC	0.517													33	0					0	0	0.0024448	0	0
MYOCD	93649	broad.mit.edu	37	17	12655993	12655993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:12655993C>T	uc002gnn.2	+	10	1687	c.1388C>T	c.(1387-1389)TCT>TTT	p.S463F	MYOCD_uc002gno.2_Missense_Mutation_p.S463F|MYOCD_uc002gnp.1_Missense_Mutation_p.S367F|MYOCD_uc002gnq.2_Missense_Mutation_p.S182F	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	463	Ser-rich.				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		CCAGCCTCCTCTGACCTGTCA	0.622													19	24					0	0	0.00121646	0	0
ELAC2	60528	broad.mit.edu	37	17	12899106	12899106	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:12899106G>A	uc002gnz.3	-	19	1817	c.1722C>T	c.(1720-1722)CAC>CAT	p.H574H	ELAC2_uc002gnu.3_5'UTR|ELAC2_uc002gnv.3_Silent_p.H202H|ELAC2_uc002gnw.3_Silent_p.H232H|ELAC2_uc002gnx.3_Silent_p.H334H|ELAC2_uc010vvo.1_Silent_p.H372H|ELAC2_uc010vvp.1_Silent_p.H555H|ELAC2_uc010vvq.1_Silent_p.H573H|ELAC2_uc010vvr.1_Silent_p.H534H	NM_018127	NP_060597	Q9BQ52	RNZ2_HUMAN	elaC homolog 2 isoform 1	574					tRNA processing	nucleus	endonuclease activity|metal ion binding|protein binding				0						CCAGCAAAGGGTGAAGCGGCT	0.552									Hereditary_Prostate_Cancer				5	10					0	0	0.00116845	0	0
MYO15A	51168	broad.mit.edu	37	17	18042918	18042919	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:18042918_18042919GG>AA	uc010vxh.1	+	18	5542_5543	c.5204_5205GG>AA	c.(5203-5205)CGG>CAA	p.R1735Q		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1735	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					GTACGGAGCCGGACACGGGTAA	0.639													11	14					0	0	6.4e-05	0	0
EVPLL	645027	broad.mit.edu	37	17	18284921	18284921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:18284921G>A	uc002gte.2	+	4	478	c.223G>A	c.(223-225)GAG>AAG	p.E75K		NM_001145127	NP_001138599	A8MZ36	EVPLL_HUMAN	envoplakin-like	75	Potential.										0						TGACAGCATCGAGCAGCTGCA	0.662													7	10					0	0	0.00307968	0	0
TRIM16L	147166	broad.mit.edu	37	17	18638748	18638748	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:18638748C>T	uc002gug.1	+	10	1709	c.1022C>T	c.(1021-1023)CCG>CTG	p.P341L	TRIM16L_uc010vyf.1_Missense_Mutation_p.P395L|TRIM16L_uc002guh.1_Missense_Mutation_p.P341L|TRIM16L_uc010cqg.1_Missense_Mutation_p.P443L|TRIM16L_uc002gui.1_Missense_Mutation_p.P341L|TRIM16L_uc010vyg.1_Missense_Mutation_p.P341L|TRIM16L_uc010vyh.1_3'UTR	NM_001037330	NP_001032407	Q309B1	TR16L_HUMAN	tripartite motif-containing 16-like	341						cytoplasm					0						AAGCCAGCACCGTCCTTGGTG	0.522													17	1					0	0	0.00106085	0	0
Unknown	0	broad.mit.edu	37	17	19349282	19349282	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:19349282C>T	uc002gvw.2	-	1		c.897G>A								Homo sapiens mRNA for ribosomal protein S2, partial cds.																		GTATAAAAACCCTATGTTGTA	0.333													11	8					0	0	0.000566183	0	0
SLC47A1	55244	broad.mit.edu	37	17	19451411	19451411	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:19451411C>T	uc002gvy.1	+	4	506	c.420C>T	c.(418-420)ATC>ATT	p.I140I	SLC47A1_uc010vyy.1_RNA|SLC47A1_uc002gvx.2_Silent_p.I140I|SLC47A1_uc010vyz.1_Silent_p.I117I|SLC47A1_uc010cqp.1_Silent_p.I140I|SLC47A1_uc010cqq.1_5'UTR	NM_018242	NP_060712	Q96FL8	S47A1_HUMAN	solute carrier family 47, member 1	140	Helical; (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.49e-05)|all_epithelial(12;0.00263)|Hepatocellular(7;0.00345)					CCCAGCACATCCTGCTGCTCT	0.597													14	9					0	0	0.00316338	0	0
CCDC144C	348254	broad.mit.edu	37	17	20224845	20224845	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:20224845C>T	uc010cqy.1	+	1		c.359C>T				NR_023380				Homo sapiens cDNA FLJ59693 complete cds, moderately similar to Ankyrin repeat domain-containing protein 26.												0						TAGACCAGCCCCAGCACGATG	0.652													50	85					0	0	0.00361006	0	0
Unknown	0	broad.mit.edu	37	17	20407403	20407403	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:20407403C>T	uc002gxb.2	-	1		c.392G>A								Homo sapiens similar to Keratin, type I cytoskeletal 16 (Cytokeratin-16) (CK-16) (Keratin-16) (K16), mRNA (cDNA clone IMAGE:4752428).																		CACCAGAAGCCCATCAccacc	0.348													15	11					0	0	0.000958276	0	0
KCNJ12	3768	broad.mit.edu	37	17	21318927	21318927	+	Silent	SNP	C	T	T	rs142326096		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:21318927C>T	uc002gyv.1	+	3	978	c.273C>T	c.(271-273)TTC>TTT	p.F91F		NM_021012	NP_066292	Q14500	IRK12_HUMAN	potassium inwardly-rectifying channel, subfamily	91	Helical; Name=M1; (By similarity).				blood circulation|muscle contraction|regulation of heart contraction|synaptic transmission	integral to membrane	inward rectifier potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(3)|skin(1)	4				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)	Dofetilide(DB00204)	CGCTGGCCTTCCTTGCCTCCT	0.622										Prostate(3;0.18)			6	33					0	0	0.00116845	0	0
KSR1	8844	broad.mit.edu	37	17	25928939	25928939	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:25928939T>C	uc010crg.2	+	12	1565	c.1120T>C	c.(1120-1122)TGG>CGG	p.W374R	KSR1_uc002gzj.1_RNA|KSR1_uc002gzm.2_Intron	NM_014238	NP_055053	Q8IVT5	KSR1_HUMAN	kinase suppressor of ras	509					Ras protein signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(1)	4	Lung NSC(42;0.00836)		BRCA - Breast invasive adenocarcinoma(3;0.00122)	UCEC - Uterine corpus endometrioid carcinoma (53;0.168)		TGGCCATTGCTGGAAATGCCT	0.443											OREG0024261	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	15					0	0	0.000673444	0	0
FLJ40504	284085	broad.mit.edu	37	17	26604046	26604046	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:26604046C>T	uc002has.3	-	3	525	c.429G>A	c.(427-429)TGG>TGA	p.W143*		NM_173624	NP_775895			SubName: Full=Putative uncharacterized protein FLJ40504; SubName: Full=cDNA FLJ40504 fis, clone TESTI2045509, highly similar to KERATIN, TYPE I CYTOSKELETAL 18;												0	all_lung(13;0.000238)|Lung NSC(42;0.000789)			UCEC - Uterine corpus endometrioid carcinoma (53;0.155)		TCTCCAGCTTCCAGTTCTTGG	0.542													69	44					0	0	0.00361006	0	0
SEZ6	124925	broad.mit.edu	37	17	27308582	27308582	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:27308582G>A	uc002hdp.2	-	2	725	c.531C>T	c.(529-531)CCC>CCT	p.P177P	SEZ6_uc002hdm.2_RNA|SEZ6_uc010cry.1_Silent_p.P177P|SEZ6_uc002hdq.1_Silent_p.P52P|SEZ6_uc010crz.1_Silent_p.P177P	NM_178860	NP_849191	Q53EL9	SEZ6_HUMAN	seizure related 6 homolog isoform 1	177	Pro-rich.|Extracellular (Potential).					integral to membrane|plasma membrane				large_intestine(1)|central_nervous_system(1)	2	Lung NSC(42;0.0137)		Epithelial(11;4.73e-06)|all cancers(11;2.91e-05)|BRCA - Breast invasive adenocarcinoma(11;8.06e-05)|OV - Ovarian serous cystadenocarcinoma(11;0.111)			AGGCTCTGCTGGGGGGTGTAG	0.642													5	16					0	0	0.000602214	0	0
SLC6A4	6532	broad.mit.edu	37	17	28536188	28536188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:28536188C>T	uc002hey.3	-	12	2066	c.1522G>A	c.(1522-1524)GAA>AAA	p.E508K	SLC6A4_uc010csg.2_Intron	NM_001045	NP_001036	P31645	SC6A4_HUMAN	solute carrier family 6 member 4	508	Helical; Name=10; (Potential).				response to toxin|serotonin uptake|thalamus development	cytosol|endomembrane system|endosome membrane|membrane raft	actin filament binding|Rab GTPase binding|serotonin transmembrane transporter activity|serotonin:sodium symporter activity			skin(3)|ovary(1)	4					Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Citalopram(DB00215)|Clomipramine(DB01242)|Cocaine(DB00907)|Desipramine(DB01151)|Dexfenfluramine(DB01191)|Dextromethorphan(DB00514)|Doxepin(DB01142)|Duloxetine(DB00476)|Escitalopram(DB01175)|Fluoxetine(DB00472)|Fluvoxamine(DB00176)|Imipramine(DB00458)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Minaprine(DB00805)|Nefazodone(DB01149)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phentermine(DB00191)|Protriptyline(DB00344)|Sertraline(DB01104)|Sibutramine(DB01105)|Tegaserod(DB01079)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)|Zimelidine(DB04832)	GCGACTGCTTCGATCAGCGCG	0.597													23	61					0	0	0.00278032	0	0
NF1	4763	broad.mit.edu	37	17	29562966	29562966	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:29562966C>T	uc002hgg.2	+	29	4234	c.3901C>T	c.(3901-3903)CTG>TTG	p.L1301L	NF1_uc002hgh.2_Silent_p.L1301L|NF1_uc010csn.1_Silent_p.L1161L|NF1_uc002hgi.1_Silent_p.L334L	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1301	Ras-GAP.				actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		ACAAAAACTCCTGGATCCTTT	0.378			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			34	81					0	0	0.00428921	0	0
NF1	4763	broad.mit.edu	37	17	29654712	29654712	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:29654712C>T	uc002hgg.2	+	38	5797	c.5464C>T	c.(5464-5466)CAG>TAG	p.Q1822*	NF1_uc002hgh.2_Nonsense_Mutation_p.Q1801*|NF1_uc002hgi.1_Nonsense_Mutation_p.Q834*|NF1_uc010cso.2_Nonsense_Mutation_p.Q10*	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1822					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		AGCCATTGTCCAGTCTATCAT	0.522			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			48	57					0	0	0.00361006	0	0
CCL7	6354	broad.mit.edu	37	17	32598269	32598269	+	Missense_Mutation	SNP	C	T	T	rs149253093		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:32598269C>T	uc002hhz.2	+	2	251	c.181C>T	c.(181-183)CGG>TGG	p.R61W	CCL7_uc010ctf.2_Intron	NM_006273	NP_006264	P80098	CCL7_HUMAN	chemokine (C-C motif) ligand 7 precursor	61					cell-cell signaling|cellular calcium ion homeostasis|chemotaxis|immune response|inflammatory response|signal transduction	extracellular space	chemokine activity|heparin binding			ovary(1)	1	Breast(3;0.00224)	Breast(31;0.151)|Ovarian(249;0.17)		BRCA - Breast invasive adenocarcinoma(366;0.155)		CCACTGTCCCCGGGAAGCTGT	0.488													26	49					0	0	0.00178596	0	0
LIG3	3980	broad.mit.edu	37	17	33321311	33321311	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:33321311C>G	uc002hik.1	+	9	1580	c.1472C>G	c.(1471-1473)TCC>TGC	p.S491C	LIG3_uc002hij.2_Missense_Mutation_p.S491C|LIG3_uc010cth.1_Missense_Mutation_p.S500C	NM_013975	NP_039269	P49916	DNLI3_HUMAN	ligase III, DNA, ATP-dependent isoform alpha	491					base-excision repair|cell division|DNA ligation involved in DNA repair|DNA replication|reciprocal meiotic recombination|spermatogenesis	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|protein binding|zinc ion binding			skin(3)|lung(2)|ovary(2)|large_intestine(1)|pancreas(1)	9		Ovarian(249;0.17)			Bleomycin(DB00290)	GCCTGCAAGTCCGTTGAGTAT	0.527								Other_BER_factors					20	72					0	0	0.00188189	0	0
UNC45B	146862	broad.mit.edu	37	17	33503017	33503017	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:33503017G>A	uc002hja.2	+	15	2092	c.1995G>A	c.(1993-1995)AAG>AAA	p.K665K	UNC45B_uc002hjb.2_Silent_p.K663K|UNC45B_uc002hjc.2_Silent_p.K663K|UNC45B_uc010cto.2_Silent_p.K584K	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	665					cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				ACAACCCAAAGGACCGAGGCA	0.547													31	75					0	0	0.00283554	0	0
SLFN11	91607	broad.mit.edu	37	17	33680930	33680930	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:33680930C>T	uc010ctp.2	-	6	1789	c.1347G>A	c.(1345-1347)CTG>CTA	p.L449L	SLFN11_uc010ctq.2_Silent_p.L449L|SLFN11_uc002hjh.3_Silent_p.L449L|SLFN11_uc002hjg.3_Silent_p.L449L|SLFN11_uc010ctr.2_Silent_p.L449L	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	449						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CCTGCAAGTTCAGGTCCACAG	0.473													27	42					0	0	0.00209593	0	0
SLFN11	91607	broad.mit.edu	37	17	33690150	33690150	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:33690150T>A	uc010ctp.2	-	4	1119	c.677A>T	c.(676-678)TAT>TTT	p.Y226F	SLFN11_uc010ctq.2_Missense_Mutation_p.Y226F|SLFN11_uc002hjh.3_Missense_Mutation_p.Y226F|SLFN11_uc002hjg.3_Missense_Mutation_p.Y226F|SLFN11_uc010ctr.2_Missense_Mutation_p.Y226F	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	226						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CCTTTTTACATATTCTTGGAA	0.383													61	24					0	0	0.00361006	0	0
SLFN13	146857	broad.mit.edu	37	17	33772623	33772624	+	Missense_Mutation	DNP	AG	CA	CA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:33772623_33772624AG>CA	uc002hjk.1	-	1	406_407	c.76_77CT>TG	c.(76-78)CTG>TGG	p.L26W	SLFN13_uc010wch.1_Missense_Mutation_p.L26W|SLFN13_uc002hjl.2_Missense_Mutation_p.L26W|SLFN13_uc010ctt.2_Intron|SLFN13_uc002hjm.2_5'UTR	NM_144682	NP_653283	Q68D06	SLN13_HUMAN	schlafen family member 13	26						intracellular	ATP binding			ovary(1)|breast(1)	2				UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		TTCTTCTCCCAGAGTCACTTCT	0.47													40	27					0	0	6.4e-05	0	0
GAS2L2	246176	broad.mit.edu	37	17	34074223	34074223	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:34074223C>T	uc002hjv.1	-	5	925	c.897G>A	c.(895-897)CAG>CAA	p.Q299Q		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	299					cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		AGGGTCCATCCTGTACCCTTA	0.587													72	112					0	0	0.00361006	0	0
CCL5	6352	broad.mit.edu	37	17	34199381	34199381	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:34199381C>T	uc002hkf.2	-	3	344	c.276G>A	c.(274-276)TAG>TAA	p.*92*		NM_002985	NP_002976	P13501	CCL5_HUMAN	small inducible cytokine A5 precursor	92					activation of phospholipase D activity|cell-cell signaling|cellular protein complex assembly|chemokine-mediated signaling pathway|dendritic cell chemotaxis|eosinophil chemotaxis|immune response|leukocyte cell-cell adhesion|macrophage chemotaxis|negative regulation of T cell apoptosis|negative regulation of viral genome replication|neutrophil activation|positive regulation of activation of JAK2 kinase activity|positive regulation of cell-cell adhesion mediated by integrin|positive regulation of homotypic cell-cell adhesion|positive regulation of innate immune response|positive regulation of macrophage chemotaxis|positive regulation of monocyte chemotaxis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|positive regulation of T cell apoptosis|positive regulation of T cell chemotaxis|positive regulation of T cell proliferation|positive regulation of translational initiation|positive regulation of tyrosine phosphorylation of STAT protein|positive regulation of viral genome replication|protein tetramerization|regulation of chronic inflammatory response|response to virus	extracellular space	CCR1 chemokine receptor binding|CCR4 chemokine receptor binding|CCR5 chemokine receptor binding|chemoattractant activity|chemokine activity|chemokine receptor antagonist activity|protein homodimerization activity|protein self-association|receptor signaling protein tyrosine kinase activator activity				0		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0183)		ACTCTCCATCCTAGCTCATCT	0.517													45	34					0	0	0.00321405	0	0
ACACA	31	broad.mit.edu	37	17	35548085	35548085	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:35548085G>A	uc002hnm.2	-	38	4628	c.4437C>T	c.(4435-4437)CCC>CCT	p.P1479P	ACACA_uc002hnk.2_Silent_p.P1401P|ACACA_uc002hnl.2_Silent_p.P1421P|ACACA_uc002hnn.2_Silent_p.P1479P|ACACA_uc002hno.2_Silent_p.P1516P|ACACA_uc010cuy.2_Silent_p.P173P	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	1479					acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	TGATAACCGTGGGCACAAAGT	0.453													14	49					0	0	0.00316338	0	0
C17orf78	284099	broad.mit.edu	37	17	35736299	35736299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:35736299G>A	uc002hns.2	+	3	420	c.370G>A	c.(370-372)GGA>AGA	p.G124R	ACACA_uc002hnn.2_Intron|ACACA_uc002hno.2_Intron|ACACA_uc002hnq.2_Intron|C17orf78_uc010cva.1_Missense_Mutation_p.G124R	NM_173625	NP_775896	Q8N4C9	CQ078_HUMAN	hypothetical protein LOC284099	124						integral to membrane					0		Breast(25;0.00295)|Ovarian(249;0.15)				GTTTCAGACTGGATCTCTTCT	0.483													28	101					0	0	0.00106085	0	0
HNF1B	6928	broad.mit.edu	37	17	36091801	36091802	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:36091801_36091802CC>AA	uc002hok.3	-	4	1050_1051	c.829_830GG>TT	c.(829-831)GGG>TTG	p.G277L	HNF1B_uc010wdi.1_Missense_Mutation_p.G251L|HNF1B_uc010cve.1_Missense_Mutation_p.G85L	NM_000458	NP_000449	P35680	HNF1B_HUMAN	hepatocyte nuclear factor 1-beta isoform 1	277	Homeobox; HNF1-type.				endocrine pancreas development|genitalia development|kidney development|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric nephron tubule development|regulation of pronephros size	nucleus	DNA binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3		Breast(25;0.00765)|Ovarian(249;0.15)	STAD - Stomach adenocarcinoma(1;0.0142)			GGGGGACACCCCTCGCTGCAAA	0.594									Hereditary_Prostate_Cancer				16	544					0	0	6.4e-05	0	0
MRPL45	84311	broad.mit.edu	37	17	36478092	36478092	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:36478092C>T	uc002hpy.2	+	7	896	c.744C>T	c.(742-744)TTC>TTT	p.F248F		NM_032351	NP_115727	Q9BRJ2	RM45_HUMAN	mitochondrial ribosomal protein L45 precursor	248					intracellular protein transport|translation	mitochondrial inner membrane presequence translocase complex|ribosome	P-P-bond-hydrolysis-driven protein transmembrane transporter activity|structural constituent of ribosome				0	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				ATGTTGTATTCGAAAAGCAGT	0.502													30	90					0	0	0.001512	0	0
MLLT6	4302	broad.mit.edu	37	17	36873834	36873834	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:36873834C>T	uc002hqi.3	+	11	1814	c.1801C>T	c.(1801-1803)CCC>TCC	p.P601S	MLLT6_uc002hqj.2_Missense_Mutation_p.P36S|MLLT6_uc002hqk.3_5'Flank	NM_005937	NP_005928	P55198	AF17_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	601					regulation of transcription, DNA-dependent	nucleus	protein binding|zinc ion binding			breast(3)|prostate(1)|lung(1)|skin(1)	6	Breast(7;4.43e-21)					CAGCACCCTCCCCTCCTCTTC	0.682			T	MLL	AL								9	44					0	0	0.00136819	0	0
GSDMA	284110	broad.mit.edu	37	17	38130527	38130527	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:38130527G>A	uc002htl.1	+	9	871	c.753G>A	c.(751-753)GGG>GGA	p.G251G	GSDMA_uc002htm.1_Silent_p.G251G	NM_178171	NP_835465	Q96QA5	GSDMA_HUMAN	gasdermin 1	251					apoptosis|induction of apoptosis	perinuclear region of cytoplasm					0						TCCCCATAGGGGACGTACACG	0.557													6	9					0	0	0.000442599	0	0
WIPF2	147179	broad.mit.edu	37	17	38434469	38434469	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:38434469C>T	uc002hug.1	+	8	1555	c.1315C>T	c.(1315-1317)CTC>TTC	p.L439F	WIPF2_uc002huh.1_Missense_Mutation_p.L289F|WIPF2_uc010cww.1_Missense_Mutation_p.L289F|WIPF2_uc002hui.1_Missense_Mutation_p.L439F|WIPF2_uc010cwx.1_Missense_Mutation_p.L181F|WIPF2_uc010cwy.1_Missense_Mutation_p.L439F	NM_133264	NP_573571	Q8TF74	WIPF2_HUMAN	WIRE protein	439						cytoplasm|cytoskeleton	actin binding			upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						GCCACCCATTCTCAGGTGAAG	0.512										HNSCC(43;0.11)			4	16					0	0	0.00116845	0	0
KRT25	147183	broad.mit.edu	37	17	38911301	38911301	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:38911301G>A	uc002hve.2	-	1	284	c.223C>T	c.(223-225)CTT>TTT	p.L75F		NM_181534	NP_853512	Q7Z3Z0	K1C25_HUMAN	keratin 25	75	Head.|Gly-rich.					cytoplasm|intermediate filament	structural molecule activity			ovary(2)	2		Breast(137;0.00526)				TTGCCAGAAAGGAGCCCCCGC	0.577													37	65					0	0	0.00170553	0	0
KRT26	353288	broad.mit.edu	37	17	38928098	38928098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:38928098G>A	uc002hvf.2	-	1	314	c.268C>T	c.(268-270)CTC>TTC	p.L90F		NM_181539	NP_853517	Q7Z3Y9	K1C26_HUMAN	keratin 26	90	Rod.|Coil 1A.					intermediate filament	structural molecule activity				0		Breast(137;0.00526)				CGGTCGTTGAGATTCTGCATG	0.547													26	79					0	0	0.00178596	0	0
KRT23	25984	broad.mit.edu	37	17	39092815	39092815	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:39092815G>A	uc002hvm.1	-	2	630	c.41C>T	c.(40-42)TCC>TTC	p.S14F	KRT23_uc010wfl.1_Intron|KRT23_uc010cxf.1_Intron|KRT23_uc010cxg.2_Missense_Mutation_p.S14F|KRT23_uc002hvn.1_Missense_Mutation_p.S14F	NM_015515	NP_056330	Q9C075	K1C23_HUMAN	keratin 23	14	Head.					intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)|Ovarian(249;0.15)				GCCATGGAAGGAGGCCGAGGG	0.687													24	40					0	0	0.0024448	0	0
KRTAP1-3	81850	broad.mit.edu	37	17	39190779	39190779	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:39190779T>C	uc002hvv.2	-	1	329	c.295A>G	c.(295-297)AGT>GGT	p.S99G		NM_030966	NP_112228	Q8IUG1	KRA13_HUMAN	keratin associated protein 1-3	109						extracellular region|keratin filament	structural constituent of epidermis				0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			ACAGCTCCACTGCTGCCCTCC	0.652													3	28					0	0	6.4e-05	0	0
KRT33B	3884	broad.mit.edu	37	17	39521250	39521250	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:39521250C>T	uc002hwl.2	-	6	923	c.878G>A	c.(877-879)CGA>CAA	p.R293Q		NM_002279	NP_002270	Q14525	KT33B_HUMAN	type I hair keratin 3B	293	Coil 2.|Rod.					intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000496)				CAGAGAGTATCGCTGTGGTGG	0.552													14	25					0	0	0.00185496	0	0
KRT32	3882	broad.mit.edu	37	17	39623238	39623239	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:39623238_39623239CC>TA	uc002hwr.2	-	1	400_401	c.339_340GG>TA	c.(337-342)AGGGTG>AGTATG	p.113_114RV>SM		NM_002278	NP_002269	Q14532	K1H2_HUMAN	keratin 32	113_114	Coil 1A.|Rod.				epidermis development	intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000812)				AGCTGCCGCACCCTCGTCAGGT	0.594													44	78					0	0	6.4e-05	0	0
KRT32	3882	broad.mit.edu	37	17	39623483	39623483	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:39623483C>T	uc002hwr.2	-	1	156	c.95G>A	c.(94-96)CGG>CAG	p.R32Q		NM_002278	NP_002269	Q14532	K1H2_HUMAN	keratin 32	32	Head.				epidermis development	intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000812)				CAGCTCAGGCCGGCAGTTCAC	0.632													31	50					0	0	0.00209593	0	0
KRT14	3861	broad.mit.edu	37	17	39743049	39743049	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:39743049G>A	uc002hxf.1	-	1	99	c.38C>T	c.(37-39)TCC>TTC	p.S13F	JUP_uc010wfs.1_Intron|KRT14_uc010cxp.1_Missense_Mutation_p.S13F	NM_000526	NP_000517	P02533	K1C14_HUMAN	keratin 14	13	Head.				epidermis development|hemidesmosome assembly|intermediate filament bundle assembly	cytosol|keratin filament|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(1)	1		Breast(137;0.000307)				GCCCTTCATGGAGCTGGAGGA	0.557													3	4					0	0	0.000602214	0	0
TTC25	83538	broad.mit.edu	37	17	40093094	40093094	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:40093094C>T	uc002hyj.3	+	5	628	c.539C>T	c.(538-540)TCG>TTG	p.S180L	TTC25_uc010cxt.2_RNA|TTC25_uc010cxs.1_Missense_Mutation_p.S180L	NM_031421	NP_113609	Q96NG3	TTC25_HUMAN	tetratricopeptide repeat domain 25	180						cytoplasm	protein binding			ovary(1)	1		all_cancers(22;8.16e-06)|Breast(137;0.000143)|all_epithelial(22;0.000236)				TGGAAGGCCTCGCTCAAGAGT	0.512													31	81					0	0	0.00283554	0	0
KCNH4	23415	broad.mit.edu	37	17	40321537	40321537	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:40321537G>A	uc002hzb.2	-	9	1881	c.1548C>T	c.(1546-1548)TTC>TTT	p.F516F		NM_012285	NP_036417	Q9UQ05	KCNH4_HUMAN	potassium voltage-gated channel, subfamily H,	516	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	two-component sensor activity|voltage-gated potassium channel activity			large_intestine(1)	1		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		ACGTGGTCTGGAAGTATTCGA	0.657													19	55					0	0	0.00278032	0	0
KCNH4	23415	broad.mit.edu	37	17	40321672	40321672	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:40321672G>A	uc002hzb.2	-	9	1746	c.1413C>T	c.(1411-1413)TTC>TTT	p.F471F		NM_012285	NP_036417	Q9UQ05	KCNH4_HUMAN	potassium voltage-gated channel, subfamily H,	471	Extracellular (Potential).				regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	two-component sensor activity|voltage-gated potassium channel activity			large_intestine(1)	1		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		TCACGTTCCCGAACACCACAG	0.657													20	44					0	0	0.00332997	0	0
LOC100190938	100190938	broad.mit.edu	37	17	40905601	40905601	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:40905601C>T	uc002ibd.1	-	4		c.2486G>A								Homo sapiens cDNA FLJ32559 fis, clone SPLEN1000144.												0						TTGGCATCTCCATTTTCTGCA	0.473													19	24					0	0	0.00074312	0	0
C17orf53	78995	broad.mit.edu	37	17	42226383	42226384	+	Silent	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:42226383_42226384CC>TT	uc002ifi.1	+	3	1397_1398	c.1212_1213CC>TT	c.(1210-1215)ATCCTG>ATTTTG	p.404_405IL>IL	C17orf53_uc010czq.1_Silent_p.404_405IL>IL|C17orf53_uc002ifj.1_Silent_p.404_405IL>IL|C17orf53_uc002ifk.1_RNA	NM_024032	NP_076937	Q8N3J3	CQ053_HUMAN	hypothetical protein LOC78995	404_405											0		Breast(137;0.0364)|Prostate(33;0.0376)		BRCA - Breast invasive adenocarcinoma(366;0.114)		CAGCTGGGATCCTGCCTCACCA	0.614													11	21					0	0	6.4e-05	0	0
EFTUD2	9343	broad.mit.edu	37	17	42929143	42929143	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:42929143G>A	uc002ihn.2	-	27	3019	c.2758C>T	c.(2758-2760)CCC>TCC	p.P920S	EFTUD2_uc010wje.1_Missense_Mutation_p.P885S|EFTUD2_uc010wjf.1_Missense_Mutation_p.P910S	NM_004247	NP_004238	Q15029	U5S1_HUMAN	elongation factor Tu GTP binding domain	920						Cajal body|catalytic step 2 spliceosome|cytoplasm|nuclear speck	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(33;0.109)				GGCTCCAAGGGGCGGATGACA	0.552													9	20					0	0	0.000673444	0	0
IMP5	162540	broad.mit.edu	37	17	43924178	43924178	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:43924178C>T	uc010wka.1	+	1	1906	c.1906C>T	c.(1906-1908)CCA>TCA	p.P636S	LOC100128977_uc010wjz.1_Intron	NM_175882	NP_787078	Q8IUH8	IMP5_HUMAN	intramembrane protease 5 precursor	636	Extracellular (Potential).					integral to membrane	aspartic-type endopeptidase activity			pancreas(2)	2	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.148)		CATGCTGATCCCACTCATGCC	0.662													32	23					0	0	0.0024448	0	0
KIAA1267	284058	broad.mit.edu	37	17	44109612	44109612	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:44109612G>A	uc002ikb.2	-	13	2976	c.2891C>T	c.(2890-2892)CCC>CTC	p.P964L	KIAA1267_uc002ikc.2_Missense_Mutation_p.P964L|KIAA1267_uc002ikd.2_Missense_Mutation_p.P964L|KIAA1267_uc010dav.2_Missense_Mutation_p.P963L|KIAA1267_uc010wkb.1_Missense_Mutation_p.P295L|KIAA1267_uc010wkc.1_Missense_Mutation_p.P232L	NM_015443	NP_056258	Q7Z3B3	K1267_HUMAN	hypothetical protein LOC284058	964						MLL1 complex	protein binding			skin(2)	2		Melanoma(429;0.211)				GGGGGTGGAGGGGTTGGCACT	0.582													65	49					0	0	0.00361006	0	0
Unknown	0	broad.mit.edu	37	17	45127354	45127354	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:45127354G>A	uc010wkj.1	+	2	906	c.552G>A	c.(550-552)AAG>AAA	p.K184K	uc010wkl.1_RNA					SubName: Full=Putative uncharacterized protein LRRC37A3;																		GAACACCCAAGGTCAAAAAGA	0.433													58	456					0	0	0.00361006	0	0
MYL4	4635	broad.mit.edu	37	17	45299208	45299208	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:45299208C>T	uc002ilg.2	+	5	602	c.474C>T	c.(472-474)GTC>GTT	p.V158V	MYL4_uc002ilh.2_Silent_p.V158V	NM_001002841	NP_001002841	P12829	MYL4_HUMAN	atrial/embryonic alkali myosin light chain	158	EF-hand 2.				cardiac muscle contraction|muscle filament sliding|muscle organ development|positive regulation of ATPase activity|regulation of the force of heart contraction	A band|cytosol|muscle myosin complex	actin filament binding|actin monomer binding|calcium ion binding|myosin II heavy chain binding|structural constituent of muscle			ovary(2)	2						TTCGGCACGTCCTTGCCACCC	0.602													13	33					0	0	0.00244969	0	0
TBX21	30009	broad.mit.edu	37	17	45820503	45820503	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:45820503C>T	uc002ilv.1	+	3	924	c.713C>T	c.(712-714)TCA>TTA	p.S238L		NM_013351	NP_037483	Q9UL17	TBX21_HUMAN	T-box 21	238	T-box.				lymphocyte migration|multicellular organismal development|positive regulation of transcription, DNA-dependent|response to virus	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0						CAGGAAGTTTCATTTGGGAAA	0.572													40	21					0	0	0.00148497	0	0
SCRN2	90507	broad.mit.edu	37	17	45915985	45915985	+	Missense_Mutation	SNP	G	A	A	rs142383711	byFrequency	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:45915985G>A	uc002imd.2	-	6	976	c.850C>T	c.(850-852)CGC>TGC	p.R284C	SCRN2_uc002imc.2_Missense_Mutation_p.R292C|SCRN2_uc002imf.2_Missense_Mutation_p.R284C|SCRN2_uc002ime.2_RNA	NM_138355	NP_612364	Q96FV2	SCRN2_HUMAN	secernin 2 isoform 1	284					proteolysis		dipeptidase activity			ovary(1)	1						GCCGTGGTGCGAAAGCCTCCC	0.607													17	44					0	0	0.00121646	0	0
SNX11	29916	broad.mit.edu	37	17	46198718	46198718	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:46198718C>T	uc002inf.1	+	8	1015	c.661C>T	c.(661-663)CCC>TCC	p.P221S	SNX11_uc010wlg.1_Missense_Mutation_p.P213S|SNX11_uc010wlh.1_Missense_Mutation_p.P213S|SNX11_uc010wli.1_Missense_Mutation_p.P160S|SNX11_uc010wlj.1_Missense_Mutation_p.P77S|SNX11_uc002ing.1_Missense_Mutation_p.P221S|SNX11_uc002inh.1_Missense_Mutation_p.P221S	NM_152244	NP_689450	Q9Y5W9	SNX11_HUMAN	sorting nexin 11	221					cell communication|protein transport	membrane	phosphatidylinositol binding				0						CTTGGAAAGTCCCACTCTCCC	0.542													40	103					0	0	0.00148497	0	0
NGFR	4804	broad.mit.edu	37	17	47583862	47583862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:47583862C>T	uc002ioz.3	+	3	535	c.410C>T	c.(409-411)TCC>TTC	p.S137F		NM_002507	NP_002498	P08138	TNR16_HUMAN	nerve growth factor receptor precursor	137	TNFR-Cys 3.|Extracellular (Potential).				anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|membrane protein intracellular domain proteolysis|negative regulation of axonogenesis|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|positive regulation of axonogenesis	cell surface|cytosol|endosome|extracellular region|integral to plasma membrane|nucleoplasm				ovary(1)|lung(1)	2	all_cancers(4;1.45e-13)|Breast(4;6.34e-28)|all_epithelial(4;4.95e-17)					CTCGTGTTCTCCTGCCAGGAC	0.692													13	17					0	0	0.00400662	0	0
COL1A1	1277	broad.mit.edu	37	17	48264133	48264133	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:48264133C>T	uc002iqm.2	-	48	3808	c.3682G>A	c.(3682-3684)GAC>AAC	p.D1228N		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	1228					axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	ACCTCGAGGTCACGGTCACGA	0.622			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						40	125					0	0	0.00361006	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48606153	48606153	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:48606153G>A	uc010wmr.1	+	17	2796	c.2634G>A	c.(2632-2634)GGG>GGA	p.G878G	MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	841					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			AGCAACTGGGGATCAAAGACA	0.557													24	14					0	0	0.00395357	0	0
CACNA1G	8913	broad.mit.edu	37	17	48646309	48646309	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:48646309C>T	uc002irk.1	+	2	693	c.321C>T	c.(319-321)ATC>ATT	p.I107I	CACNA1G_uc002iri.1_Silent_p.I107I|CACNA1G_uc002irj.1_Silent_p.I107I|CACNA1G_uc002irl.1_Silent_p.I107I|CACNA1G_uc002irm.1_Silent_p.I107I|CACNA1G_uc002irn.1_Silent_p.I107I|CACNA1G_uc002iro.1_Silent_p.I107I|CACNA1G_uc002irp.1_Silent_p.I107I|CACNA1G_uc002irq.1_Silent_p.I107I|CACNA1G_uc002irr.1_Silent_p.I107I|CACNA1G_uc002irs.1_Silent_p.I107I|CACNA1G_uc002irt.1_Silent_p.I107I|CACNA1G_uc002irv.1_Silent_p.I107I|CACNA1G_uc002irw.1_Silent_p.I107I|CACNA1G_uc002iru.1_Silent_p.I107I|CACNA1G_uc002irx.1_Silent_p.I20I|CACNA1G_uc002iry.1_Silent_p.I20I|CACNA1G_uc002irz.1_Silent_p.I20I|CACNA1G_uc002isa.1_Silent_p.I20I|CACNA1G_uc002isb.1_Silent_p.I20I|CACNA1G_uc002isc.1_Silent_p.I20I|CACNA1G_uc002isd.1_Silent_p.I20I|CACNA1G_uc002ise.1_Silent_p.I20I|CACNA1G_uc002isf.1_Silent_p.I20I|CACNA1G_uc002isg.1_Silent_p.I20I|CACNA1G_uc002ish.1_Silent_p.I20I|CACNA1G_uc002isi.1_Silent_p.I20I	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	107	Extracellular (Potential).|I.				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	GCGAGGACATCGCCTGTGACT	0.458													23	15					0	0	0.00332997	0	0
CACNA1G	8913	broad.mit.edu	37	17	48650027	48650027	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:48650027A>C	uc002irk.1	+	6	1231	c.859A>C	c.(859-861)ACG>CCG	p.T287P	CACNA1G_uc002iri.1_Missense_Mutation_p.T287P|CACNA1G_uc002irj.1_Missense_Mutation_p.T287P|CACNA1G_uc002irl.1_Missense_Mutation_p.T287P|CACNA1G_uc002irm.1_Missense_Mutation_p.T287P|CACNA1G_uc002irn.1_Missense_Mutation_p.T287P|CACNA1G_uc002iro.1_Missense_Mutation_p.T287P|CACNA1G_uc002irp.1_Missense_Mutation_p.T287P|CACNA1G_uc002irq.1_Missense_Mutation_p.T287P|CACNA1G_uc002irr.1_Missense_Mutation_p.T287P|CACNA1G_uc002irs.1_Missense_Mutation_p.T287P|CACNA1G_uc002irt.1_Missense_Mutation_p.T287P|CACNA1G_uc002irv.1_Missense_Mutation_p.T287P|CACNA1G_uc002irw.1_Missense_Mutation_p.T287P|CACNA1G_uc002iru.1_Missense_Mutation_p.T287P|CACNA1G_uc002irx.1_Missense_Mutation_p.T200P|CACNA1G_uc002iry.1_Missense_Mutation_p.T200P|CACNA1G_uc002irz.1_Missense_Mutation_p.T200P|CACNA1G_uc002isa.1_Missense_Mutation_p.T200P|CACNA1G_uc002isb.1_Missense_Mutation_p.T200P|CACNA1G_uc002isc.1_Missense_Mutation_p.T200P|CACNA1G_uc002isd.1_Missense_Mutation_p.T200P|CACNA1G_uc002ise.1_Missense_Mutation_p.T200P|CACNA1G_uc002isf.1_Missense_Mutation_p.T200P|CACNA1G_uc002isg.1_Missense_Mutation_p.T200P|CACNA1G_uc002ish.1_Missense_Mutation_p.T200P|CACNA1G_uc002isi.1_Missense_Mutation_p.T200P	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	287	Extracellular (Potential).|I.				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	AAGCGTGCCCACGCTGCGCGG	0.622													3	10					0	0	6.4e-05	0	0
CACNA1G	8913	broad.mit.edu	37	17	48653522	48653522	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:48653522G>A	uc002irk.1	+	8	2131	c.1759G>A	c.(1759-1761)GGG>AGG	p.G587R	CACNA1G_uc002iri.1_Missense_Mutation_p.G587R|CACNA1G_uc002irj.1_Missense_Mutation_p.G587R|CACNA1G_uc002irl.1_Missense_Mutation_p.G587R|CACNA1G_uc002irm.1_Missense_Mutation_p.G587R|CACNA1G_uc002irn.1_Missense_Mutation_p.G587R|CACNA1G_uc002iro.1_Missense_Mutation_p.G587R|CACNA1G_uc002irp.1_Missense_Mutation_p.G587R|CACNA1G_uc002irq.1_Missense_Mutation_p.G587R|CACNA1G_uc002irr.1_Missense_Mutation_p.G587R|CACNA1G_uc002irs.1_Missense_Mutation_p.G587R|CACNA1G_uc002irt.1_Missense_Mutation_p.G587R|CACNA1G_uc002irv.1_Missense_Mutation_p.G587R|CACNA1G_uc002irw.1_Missense_Mutation_p.G587R|CACNA1G_uc002iru.1_Missense_Mutation_p.G587R|CACNA1G_uc002irx.1_Missense_Mutation_p.G500R|CACNA1G_uc002iry.1_Missense_Mutation_p.G500R|CACNA1G_uc002irz.1_Missense_Mutation_p.G500R|CACNA1G_uc002isa.1_Missense_Mutation_p.G500R|CACNA1G_uc002isb.1_Missense_Mutation_p.G500R|CACNA1G_uc002isc.1_Missense_Mutation_p.G500R|CACNA1G_uc002isd.1_Missense_Mutation_p.G500R|CACNA1G_uc002ise.1_Missense_Mutation_p.G500R|CACNA1G_uc002isf.1_Missense_Mutation_p.G500R|CACNA1G_uc002isg.1_Missense_Mutation_p.G500R|CACNA1G_uc002ish.1_Missense_Mutation_p.G500R|CACNA1G_uc002isi.1_Missense_Mutation_p.G500R	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	587	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	TGTGGGCAGCGGGAAGGTGTA	0.657													5	7					0	0	0.000602214	0	0
CACNA1G	8913	broad.mit.edu	37	17	48678454	48678454	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:48678454C>T	uc002irk.1	+	19	4206	c.3834C>T	c.(3832-3834)TTC>TTT	p.F1278F	CACNA1G_uc002iri.1_Silent_p.F1278F|CACNA1G_uc002irj.1_Silent_p.F1255F|CACNA1G_uc002irl.1_Silent_p.F1255F|CACNA1G_uc002irm.1_Silent_p.F1255F|CACNA1G_uc002irn.1_Silent_p.F1255F|CACNA1G_uc002iro.1_Silent_p.F1255F|CACNA1G_uc002irp.1_Silent_p.F1278F|CACNA1G_uc002irq.1_Silent_p.F1255F|CACNA1G_uc002irr.1_Silent_p.F1278F|CACNA1G_uc002irs.1_Silent_p.F1278F|CACNA1G_uc002irt.1_Silent_p.F1278F|CACNA1G_uc002irv.1_Silent_p.F1278F|CACNA1G_uc002irw.1_Silent_p.F1255F|CACNA1G_uc002iru.1_Silent_p.F1255F|CACNA1G_uc002irx.1_Silent_p.F1191F|CACNA1G_uc002iry.1_Silent_p.F1191F|CACNA1G_uc002irz.1_Silent_p.F1191F|CACNA1G_uc002isa.1_Silent_p.F1191F|CACNA1G_uc002isb.1_Silent_p.F1191F|CACNA1G_uc002isc.1_Silent_p.F1191F|CACNA1G_uc002isd.1_Silent_p.F1191F|CACNA1G_uc002ise.1_Silent_p.F1191F|CACNA1G_uc002isf.1_Silent_p.F1191F|CACNA1G_uc002isg.1_Silent_p.F1191F|CACNA1G_uc002ish.1_Silent_p.F1191F|CACNA1G_uc002isi.1_Silent_p.F1168F|CACNA1G_uc002isj.2_Silent_p.F2F	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1278	III.|Helical; Name=S1 of repeat III; (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	ACAAGATGTTCGACCACGTGG	0.607													30	77					0	0	0.0024448	0	0
ABCC3	8714	broad.mit.edu	37	17	48745355	48745355	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:48745355C>T	uc002isl.2	+	13	1847	c.1767C>T	c.(1765-1767)ATC>ATT	p.I589I		NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	589	Helical; Name=11; (By similarity).|ABC transmembrane type-1 1.				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	CCCAGTTAATCAGCAACCTGA	0.522													16	30					0	0	0.00316338	0	0
ABCC3	8714	broad.mit.edu	37	17	48746588	48746588	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:48746588G>A	uc002isl.2	+	16	2105	c.2025G>A	c.(2023-2025)CTG>CTA	p.L675L		NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	675	ABC transporter 1.|Cytoplasmic (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	CTGCCCTGCTGGGAGAGATGG	0.652													24	22					0	0	0.00332997	0	0
STXBP4	252983	broad.mit.edu	37	17	53237186	53237186	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:53237186C>T	uc002iuf.1	+	18	1783	c.1576C>T	c.(1576-1578)CAT>TAT	p.H526Y	STXBP4_uc010dcd.1_Missense_Mutation_p.H504Y	NM_178509	NP_848604	Q6ZWJ1	STXB4_HUMAN	syntaxin binding protein 4	526	WW.					cytoplasm	calcium ion binding			ovary(1)	1						ATCCTGGATCCATCCCGTGAT	0.433													21	14					0	0	0.00332997	0	0
DGKE	8526	broad.mit.edu	37	17	54912440	54912440	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:54912440A>C	uc002iur.2	+	2	464	c.284A>C	c.(283-285)GAC>GCC	p.D95A	DGKE_uc002ius.1_Missense_Mutation_p.D95A|C17orf67_uc002iuq.2_5'Flank	NM_003647	NP_003638	P52429	DGKE_HUMAN	diacylglycerol kinase epsilon	95	Phorbol-ester/DAG-type 1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|phospholipid biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding|protein binding			breast(2)	2	Breast(9;3.59e-07)					CTCCGCGTGGACGAGGGCTGC	0.637													14	21					0	0	0.00185496	0	0
TRIM25	7706	broad.mit.edu	37	17	54969163	54969163	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:54969163G>A	uc002iut.2	-	9	1851	c.1791C>T	c.(1789-1791)GTC>GTT	p.V597V	TRIM25_uc010dcj.2_Silent_p.V389V	NM_005082	NP_005073	Q14258	TRI25_HUMAN	tripartite motif-containing 25	597	B30.2/SPRY.				innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|response to virus	cell junction|cytosol|nucleus	sequence-specific DNA binding transcription factor activity|ubiquitin-protein ligase activity|zinc ion binding			lung(1)|breast(1)|skin(1)	3	Breast(9;6.15e-08)					ACATCAGGTGGACCTTGTCGG	0.552													11	26					0	0	0.000978159	0	0
LPO	4025	broad.mit.edu	37	17	56327781	56327781	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:56327781G>A	uc002ivt.2	+	7	895	c.579G>A	c.(577-579)CGG>CGA	p.R193R	LPO_uc010dco.2_Silent_p.R193R|LPO_uc010wnr.1_Silent_p.R110R|LPO_uc010wns.1_Silent_p.R134R|LPO_uc010dcp.2_Silent_p.R110R|LPO_uc010dcq.2_5'UTR|LPO_uc010dcr.2_5'Flank	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	193					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						TGTAGGCCCGGGAGGTATCTA	0.473											OREG0024609	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	31	38					0	0	0.000953801	0	0
BZRAP1	9256	broad.mit.edu	37	17	56382928	56382928	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:56382928C>T	uc002ivx.3	-	28	6205	c.5334G>A	c.(5332-5334)CAG>CAA	p.Q1778Q	BZRAP1_uc002ivv.2_5'Flank|BZRAP1_uc002ivw.2_Silent_p.Q10Q|BZRAP1_uc010dcs.2_Silent_p.Q1718Q|BZRAP1_uc010wnt.1_Silent_p.Q1769Q	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1778	SH3 3.					mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GGGAACTCTCCTGGGGGTTGT	0.602													17	28					0	0	0.00121646	0	0
BCAS3	54828	broad.mit.edu	37	17	59161840	59161841	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:59161840_59161841CC>TT	uc002iyv.3	+	23	2494_2495	c.2385_2386CC>TT	c.(2383-2388)GTCCGC>GTTTGC	p.R796C	BCAS3_uc002iyu.3_Missense_Mutation_p.R781C|BCAS3_uc002iyw.3_Missense_Mutation_p.R777C|BCAS3_uc002iyy.3_Missense_Mutation_p.R552C|BCAS3_uc002iyz.3_Missense_Mutation_p.R350C|BCAS3_uc002iza.3_Missense_Mutation_p.R335C	NM_001099432	NP_001092902	Q9H6U6	BCAS3_HUMAN	breast carcinoma amplified sequence 3 isoform 1	796						nucleus				ovary(2)|central_nervous_system(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(1;3.11e-12)|Epithelial(12;8.2e-07)|all cancers(12;5.33e-06)			TCCAGCCAGTCCGCTCTGACCC	0.475													13	54					0	0	6.4e-05	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60342342	60342342	+	RNA	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:60342342G>A	uc010woz.1	-	14		c.1787C>T				NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						TAAGCCTAGGGAAATTATCCA	0.483													85	44					0	0	0.00361006	0	0
EFCAB3	146779	broad.mit.edu	37	17	60493450	60493450	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:60493450G>A	uc002izu.1	+	10	1155	c.1077G>A	c.(1075-1077)GGG>GGA	p.G359G	EFCAB3_uc010wpc.1_Silent_p.G411G	NM_173503	NP_775774	Q8N7B9	EFCB3_HUMAN	EF-hand calcium binding domain 3 isoform b	359							calcium ion binding			skin(1)	1			BRCA - Breast invasive adenocarcinoma(2;2.27e-11)			AGATCCGAGGGGATTTGATTG	0.423													29	101					0	0	0.00106085	0	0
MARCH10	162333	broad.mit.edu	37	17	60814507	60814507	+	Missense_Mutation	SNP	C	T	T	rs17853369		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:60814507C>T	uc010ddr.2	-	6	960	c.722G>A	c.(721-723)GGA>GAA	p.G241E	MARCH10_uc002jag.3_Missense_Mutation_p.G241E|MARCH10_uc010dds.2_Missense_Mutation_p.G279E|MARCH10_uc002jah.2_Missense_Mutation_p.G240E|uc002jaj.1_RNA|uc002jak.2_RNA	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	241							ligase activity|zinc ion binding				0						ACTATTTTTTCCTTGGAAGGC	0.532													40	163					0	0	0.000953801	0	0
TANC2	26115	broad.mit.edu	37	17	61498624	61498624	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:61498624G>A	uc002jal.3	+	25	5304	c.5281G>A	c.(5281-5283)GAA>AAA	p.E1761K	TANC2_uc010wpe.1_3'UTR|TANC2_uc002jao.3_Missense_Mutation_p.E872K	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1761							binding			ovary(2)	2						CAACCCTAACGAAATCAAACC	0.507													119	68					0	0	0.00361006	0	0
ACE	1636	broad.mit.edu	37	17	61557763	61557763	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:61557763G>A	uc002jau.1	+	5	743	c.721G>A	c.(721-723)GAA>AAA	p.E241K	ACE_uc010wpi.1_Missense_Mutation_p.E241K|ACE_uc010ddu.1_Missense_Mutation_p.E58K	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	241	Extracellular (Potential).|Peptidase M2 1.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	GGACGATCTGGAACACCTCTA	0.612													58	19					0	0	0.00361006	0	0
CSHL1	1444	broad.mit.edu	37	17	61987521	61987521	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:61987521C>T	uc002jda.1	-	4	533	c.471_splice	c.e4+1	p.G157_splice	CSHL1_uc002jcz.1_Splice_Site_p.G134_splice|CSHL1_uc002jdb.1_Splice_Site_p.G63_splice|CSHL1_uc002jdc.1_Splice_Site_p.G74_splice|CSHL1_uc002jdd.1_Splice_Site_p.G95_splice|CSHL1_uc002jde.2_3'UTR|CSHL1_uc002jdf.2_Missense_Mutation_p.V75M|CSHL1_uc002jdg.2_3'UTR|CSHL1_uc002jdh.2_Missense_Mutation_p.V64M	NM_022579	NP_072101	Q14406	CSHL_HUMAN	chorionic somatomammotropin hormone-like 1							extracellular region	hormone activity|metal ion binding				0						GCCACCCTCACCCCCATCAGC	0.577													18	80					0	0	0.000958276	0	0
CCDC46	201134	broad.mit.edu	37	17	64171218	64171218	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:64171218C>T	uc002jfl.2	-	4	633	c.414G>A	c.(412-414)TGG>TGA	p.W138*	CCDC46_uc002jfm.2_Nonsense_Mutation_p.W138*|CCDC46_uc010dep.2_Nonsense_Mutation_p.W138*	NM_145036	NP_659473	Q8N8E3	CE112_HUMAN	coiled-coil domain containing 46 isoform a	138						centrosome					0			BRCA - Breast invasive adenocarcinoma(6;1.53e-06)			AAGAGAGTTTCCATGATTCAT	0.418													22	102					0	0	0.00395357	0	0
BPTF	2186	broad.mit.edu	37	17	65907642	65907642	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:65907642C>T	uc002jgf.2	+	11	3703	c.3642C>T	c.(3640-3642)TTC>TTT	p.F1214F	BPTF_uc002jge.2_Silent_p.F1340F	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	1340					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			ATGATTTTTTCATCGATGACT	0.373													19	43					0	0	0.000958276	0	0
BPTF	2186	broad.mit.edu	37	17	65914840	65914840	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:65914840C>T	uc002jgf.2	+	12	5375	c.5314C>T	c.(5314-5316)CAG>TAG	p.Q1772*	BPTF_uc002jge.2_Nonsense_Mutation_p.Q1898*	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	1898					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			GTATAGACTTCAGACAGTAAA	0.383													44	142					0	0	0.00361006	0	0
KPNA2	3838	broad.mit.edu	37	17	66039435	66039435	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:66039435C>T	uc002jgk.2	+	7	1018	c.886C>T	c.(886-888)CCC>TCC	p.P296S	KPNA2_uc002jgl.2_Missense_Mutation_p.P296S	NM_002266	NP_002257	P52292	IMA2_HUMAN	karyopherin alpha 2	296	ARM 6.				DNA metabolic process|G2 phase of mitotic cell cycle|interspecies interaction between organisms|M phase specific microtubule process|NLS-bearing substrate import into nucleus|regulation of DNA recombination	cytoplasm|nuclear pore|nucleoplasm	histone deacetylase binding|nuclear localization sequence binding|protein transporter activity			central_nervous_system(2)	2	all_cancers(12;1.18e-09)		BRCA - Breast invasive adenocarcinoma(8;1.03e-07)|LUSC - Lung squamous cell carcinoma(166;0.24)			AGGAGTTGTGCCCCAACTTGT	0.423													87	438					0	0	0.00361006	0	0
ABCA8	10351	broad.mit.edu	37	17	66937028	66937028	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:66937028A>G	uc002jhp.2	-	3	351	c.172T>C	c.(172-174)TCA>CCA	p.S58P	ABCA8_uc002jhq.2_Missense_Mutation_p.S58P|ABCA8_uc010wqq.1_Missense_Mutation_p.S58P|ABCA8_uc010wqr.1_5'UTR|ABCA8_uc002jhr.2_Missense_Mutation_p.S58P|ABCA8_uc002jhs.2_Missense_Mutation_p.S58P|ABCA8_uc002jht.2_Missense_Mutation_p.S58P	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	58						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					GTAAGCAGTGAAGAAAAATCA	0.353													5	40					0	0	0.000602214	0	0
ABCA6	23460	broad.mit.edu	37	17	67103946	67103946	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:67103946G>A	uc002jhw.1	-	18	2455	c.2280C>T	c.(2278-2280)TTC>TTT	p.F760F	ABCA6_uc002jhx.1_Silent_p.F213F	NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	760					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					CCAGATCACTGAAAAGATCTA	0.318													8	21					0	0	0.00307968	0	0
CD300LB	124599	broad.mit.edu	37	17	72527465	72527465	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:72527465G>A	uc002jkx.2	-	1	149	c.136C>T	c.(136-138)CTT>TTT	p.L46F	CD300LB_uc010wqz.1_Missense_Mutation_p.L46F	NM_174892	NP_777552	A8K4G0	CLM7_HUMAN	CD300 molecule-like family member b	9						integral to membrane|plasma membrane	receptor activity			ovary(1)	1						AGGCTGAGAAGGAGCAGAGCA	0.622													25	59					0	0	0.00127121	0	0
CD300C	10871	broad.mit.edu	37	17	72540920	72540920	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:72540920C>T	uc002jky.1	-	2	589	c.228G>A	c.(226-228)GGG>GGA	p.G76G		NM_006678	NP_006669	Q08708	CLM6_HUMAN	CD300C antigen precursor	76	Extracellular (Potential).|Ig-like V-type.				cellular defense response	integral to plasma membrane	transmembrane receptor activity				0						CATTCCTTTTCCCTGCTGACC	0.532													23	64					0	0	0.00229938	0	0
FDXR	2232	broad.mit.edu	37	17	72860060	72860060	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:72860060C>A	uc002jly.2	-	10	1219	c.1132G>T	c.(1132-1134)GGG>TGG	p.G378W	FDXR_uc010wri.1_Missense_Mutation_p.G326W|FDXR_uc010wrj.1_Missense_Mutation_p.G376W|FDXR_uc002jlw.2_Missense_Mutation_p.G135W|FDXR_uc002jlx.2_Missense_Mutation_p.G384W|FDXR_uc002jmc.2_Missense_Mutation_p.G350W|FDXR_uc010wrk.1_Missense_Mutation_p.G409W|FDXR_uc010wrl.1_Missense_Mutation_p.G421W|FDXR_uc002jma.2_Missense_Mutation_p.G379W|FDXR_uc010wrm.1_Missense_Mutation_p.G338W|FDXR_uc002jlz.2_Missense_Mutation_p.G370W|FDXR_uc002jmb.2_Intron	NM_024417	NP_077728	P22570	ADRO_HUMAN	ferredoxin reductase isoform 1 precursor	378					cholesterol metabolic process|electron transport chain|steroid biosynthetic process|transport	mitochondrial matrix	ferredoxin-NADP+ reductase activity|protein binding				0	all_lung(278;0.172)|Lung NSC(278;0.207)					GGGATGACCCCAAGCTTGGAG	0.592													9	228					0.000978159	0.00265786	0.000978159	1	0
GGA3	23163	broad.mit.edu	37	17	73257652	73257653	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:73257652_73257653CC>TT	uc002jni.1	-	1	25_26	c.16_17GG>AA	c.(16-18)GGG>AAG	p.G6K	GGA3_uc002jnj.1_Missense_Mutation_p.G6K|GGA3_uc010wrw.1_Intron|GGA3_uc002jnk.1_5'UTR|GGA3_uc010wrx.1_5'UTR|GGA3_uc010wry.1_Intron|GGA3_uc010wrz.1_Missense_Mutation_p.G6K|MRPS7_uc002jnl.2_5'Flank|MRPS7_uc002jnm.3_5'Flank|MRPS7_uc002jnn.3_5'Flank	NM_138619	NP_619525	Q9NZ52	GGA3_HUMAN	ADP-ribosylation factor binding protein 3	6	Binds to ARF1 (in long isoform).				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|endosome membrane|trans-Golgi network	ADP-ribosylation factor binding			ovary(1)|breast(1)	2			all cancers(21;2.39e-06)|Epithelial(20;2.38e-05)			CAGGCTTTCCCCTTCCGCCTCC	0.698													7	27					0	0	6.4e-05	0	0
CASKIN2	57513	broad.mit.edu	37	17	73503700	73503700	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:73503700T>A	uc002joc.2	-	4	759	c.209A>T	c.(208-210)GAG>GTG	p.E70V	CASKIN2_uc010wsc.1_5'UTR|CASKIN2_uc002jod.2_Missense_Mutation_p.E70V	NM_020753	NP_065804	Q8WXE0	CSKI2_HUMAN	cask-interacting protein 2 isoform a	70	ANK 1.					cytoplasm				pancreas(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;4.57e-07)|Epithelial(20;2.92e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			GGCCTGAGCCTCTAGCAGCAA	0.622													41	13					0	0	0.00361006	0	0
EVPL	2125	broad.mit.edu	37	17	74015056	74015056	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:74015056C>T	uc002jqi.2	-	11	1451	c.1223G>A	c.(1222-1224)CGA>CAA	p.R408Q	EVPL_uc010wss.1_Missense_Mutation_p.R408Q|EVPL_uc010wst.1_5'UTR	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	408	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GGGGTTTCTTCGCTGTGGCAG	0.682													10	30					0	0	0.000673444	0	0
SRP68	6730	broad.mit.edu	37	17	74060080	74060080	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:74060080C>A	uc002jqk.1	-	4	573	c.538G>T	c.(538-540)GCC>TCC	p.A180S	SRP68_uc010wsu.1_Missense_Mutation_p.A79S|SRP68_uc002jql.1_Missense_Mutation_p.A142S	NM_014230	NP_055045	Q9UHB9	SRP68_HUMAN	signal recognition particle 68kDa	180					response to drug	cytosol|endoplasmic reticulum|nucleolus|ribosome|signal recognition particle, endoplasmic reticulum targeting	RNA binding|signal recognition particle binding			ovary(1)	1						TTGGTCTTGGCATCCACGCGA	0.443													40	113					5.44703e-19	1.49457e-18	0.00222228	1	0
DNAH17	8632	broad.mit.edu	37	17	76566443	76566443	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:76566443G>A	uc002jvv.1	-	3	142	c.36C>T	c.(34-36)TTC>TTT	p.F12F						RecName: Full=Dynein heavy chain 17, axonemal; AltName: Full=Axonemal beta dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain-like protein 1; AltName: Full=Axonemal dynein heavy chain-like protein 1; AltName: Full=Dynein light chain 2, axonemal;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			CCTTGGCAATGAAGGTGGGGA	0.602													4	16					0	0	0.00116845	0	0
C1QTNF1	114897	broad.mit.edu	37	17	77042686	77042686	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:77042686C>T	uc002jwp.2	+	3	545	c.205C>T	c.(205-207)CCT>TCT	p.P69S	C1QTNF1_uc002jwq.2_5'UTR|C1QTNF1_uc002jwr.3_Missense_Mutation_p.P79S|C1QTNF1_uc002jws.2_Missense_Mutation_p.P69S|C1QTNF1_uc002jwt.2_Missense_Mutation_p.P167S	NM_030968	NP_112230	Q9BXJ1	C1QT1_HUMAN	C1q and tumor necrosis factor related protein 1	69						collagen				ovary(1)	1			BRCA - Breast invasive adenocarcinoma(99;0.0294)|OV - Ovarian serous cystadenocarcinoma(97;0.201)			CCAGGGGCTCCCTGCTTCCCG	0.557											OREG0024791	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	40	92					0	0	0.00148497	0	0
GAA	2548	broad.mit.edu	37	17	78092138	78092138	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:78092138C>T	uc002jxo.2	+	19	2810	c.2628C>T	c.(2626-2628)GTC>GTT	p.V876V	GAA_uc002jxp.2_Silent_p.V876V|GAA_uc002jxq.2_Silent_p.V876V	NM_001079803	NP_001073271	P10253	LYAG_HUMAN	acid alpha-glucosidase preproprotein	876					cardiac muscle contraction|diaphragm contraction|glycogen catabolic process|lysosome organization|tongue morphogenesis|vacuolar sequestering|ventricular cardiac muscle tissue morphogenesis	lysosomal membrane	carbohydrate binding|maltose alpha-glucosidase activity			ovary(1)	1	all_neural(118;0.117)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.139)		Acarbose(DB00284)	ACACACAGGTCATCTTCCTGG	0.672													25	81					0	0	0.000720815	0	0
NPTX1	4884	broad.mit.edu	37	17	78445638	78445638	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:78445638C>T	uc002jyp.1	-	4	1129	c.971G>A	c.(970-972)GGG>GAG	p.G324E		NM_002522	NP_002513	Q15818	NPTX1_HUMAN	neuronal pentraxin I precursor	324	Pentaxin.				central nervous system development|synaptic transmission|transport	transport vesicle	metal ion binding				0	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0487)			CTCCCAGACCCCGTCCCGGGT	0.627													7	40					0	0	0.00198382	0	0
C17orf56	146705	broad.mit.edu	37	17	79202985	79202985	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:79202985T>G	uc002jzu.1	-	12	1343	c.1321A>C	c.(1321-1323)AGC>CGC	p.S441R	C17orf56_uc002jzr.1_Missense_Mutation_p.S111R|C17orf56_uc002jzs.1_Missense_Mutation_p.S357R|C17orf56_uc002jzt.1_Missense_Mutation_p.S357R|C17orf56_uc002jzv.1_Missense_Mutation_p.S289R|uc002jzw.1_RNA	NM_144679	NP_653280	Q96N21	CQ056_HUMAN	hypothetical protein LOC146705	441						integral to membrane					0	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			CACCGCCTGCTTTCTGCCAGT	0.677													5	24					0	0	0.00198382	0	0
CSNK1D	1453	broad.mit.edu	37	17	80210338	80210338	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:80210338G>A	uc002kej.2	-	5	1024	c.708C>T	c.(706-708)CCC>CCT	p.P236P	SLC16A3_uc002kee.2_Intron|CSNK1D_uc002kef.2_Silent_p.P236P|CSNK1D_uc002kei.2_Silent_p.P236P|CSNK1D_uc010wvj.1_Silent_p.P33P|CSNK1D_uc010dil.2_5'Flank|CSNK1D_uc002keh.2_Silent_p.P101P|CSNK1D_uc010dim.1_Silent_p.P33P	NM_001893	NP_001884	P48730	KC1D_HUMAN	casein kinase 1, delta isoform 1	236	Protein kinase.				circadian regulation of gene expression|DNA repair|G2/M transition of mitotic cell cycle|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|regulation of circadian rhythm|Wnt receptor signaling pathway	centrosome|cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			breast(2)	2	Breast(20;0.00136)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.227)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0155)			ACACTTCGATGGGGGTGGACA	0.537													67	203					0	0	0.00361006	0	0
C17orf101	79701	broad.mit.edu	37	17	80373320	80373320	+	Silent	SNP	G	A	A	rs145904574		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:80373320G>A	uc002keu.1	-	2	359	c.258C>T	c.(256-258)ATC>ATT	p.I86I	C17orf101_uc002ket.1_Silent_p.I86I|C17orf101_uc010dip.1_RNA|HEXDC_uc002kev.3_5'Flank|HEXDC_uc010diq.2_5'Flank	NM_024648	NP_078924	Q6PK18	CQ101_HUMAN	hypothetical protein LOC79701 isoform 1	86	Lumenal (Potential).					integral to membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(1)	1						AGGGCACCTCGATGAATCTCC	0.582													52	155					0	0	0.00361006	0	0
MYOM1	8736	broad.mit.edu	37	18	3102484	3102484	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:3102484C>T	uc002klp.2	-	23	3897	c.3563G>A	c.(3562-3564)AGC>AAC	p.S1188N	MYOM1_uc002klq.2_Missense_Mutation_p.S1092N	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	1188	Ig-like C2-type 3.					striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GTTGCCCTTGCTTTCGACTTC	0.428													53	227					0	0	0.00361006	0	0
MYOM1	8736	broad.mit.edu	37	18	3131480	3131480	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:3131480C>T	uc002klp.2	-	17	2733	c.2399G>A	c.(2398-2400)GGA>GAA	p.G800E	MYOM1_uc002klq.2_Missense_Mutation_p.G800E	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	800	Fibronectin type-III 3.					striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						AGTCACTAATCCATGACAAGT	0.378													22	37					0	0	0.00395357	0	0
L3MBTL4	91133	broad.mit.edu	37	18	6213229	6213229	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:6213229C>T	uc002kmz.3	-	12	1060	c.900G>A	c.(898-900)ATG>ATA	p.M300I	L3MBTL4_uc010dkt.2_Missense_Mutation_p.M300I|L3MBTL4_uc002kmy.3_Missense_Mutation_p.M138I	NM_173464	NP_775735	Q8NA19	LMBL4_HUMAN	l(3)mbt-like 4	300	MBT 3.				chromatin modification	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|pancreas(1)	3		Colorectal(10;0.0249)				CTTCAAGTTTCATATTTGGCA	0.318													26	47					0	0	0.00209593	0	0
L3MBTL4	91133	broad.mit.edu	37	18	6244543	6244543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:6244543C>T	uc002kmz.3	-	6	424	c.264G>A	c.(262-264)ATG>ATA	p.M88I	L3MBTL4_uc010dkt.2_Missense_Mutation_p.M88I	NM_173464	NP_775735	Q8NA19	LMBL4_HUMAN	l(3)mbt-like 4	88	MBT 1.				chromatin modification	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|pancreas(1)	3		Colorectal(10;0.0249)				CTTCTAATCTCATTCCAATCT	0.413													43	201					0	0	0.00361006	0	0
ARHGAP28	79822	broad.mit.edu	37	18	6882234	6882234	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:6882234C>T	uc010wzi.1	+	10	1096	c.858C>T	c.(856-858)TTC>TTT	p.F286F	ARHGAP28_uc002knc.2_Silent_p.F411F|ARHGAP28_uc002knd.2_Silent_p.F304F|ARHGAP28_uc002kne.2_Silent_p.F304F|ARHGAP28_uc002knf.2_Silent_p.F295F			B4DXL2	B4DXL2_HUMAN	SubName: Full=Putative uncharacterized protein ARHGAP28;	286					signal transduction	intracellular				pancreas(1)	1		Colorectal(10;0.168)				AAGCGTTTTTCAGAGAACTAC	0.393													18	68					0	0	0.00152264	0	0
LAMA1	284217	broad.mit.edu	37	18	6966186	6966186	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:6966186G>A	uc002knm.2	-	49	7104	c.7010C>T	c.(7009-7011)TCA>TTA	p.S2337L	LAMA1_uc002knl.2_5'Flank|LAMA1_uc010wzj.1_Missense_Mutation_p.S1813L	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2337	Laminin G-like 2.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCCATTAGGTGAAAAGGTATT	0.473													10	45					0	0	0.000442599	0	0
LAMA1	284217	broad.mit.edu	37	18	7009357	7009357	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:7009357C>T	uc002knm.2	-	27	3976	c.3882G>A	c.(3880-3882)TGG>TGA	p.W1294*	LAMA1_uc010wzj.1_Nonsense_Mutation_p.W770*	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1294	Laminin IV type A 2.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TAAAATATTTCCAAAAATTCT	0.343													23	59					0	0	0.00188189	0	0
LAMA1	284217	broad.mit.edu	37	18	7050746	7050746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:7050746C>T	uc002knm.2	-	4	629	c.535G>A	c.(535-537)GAA>AAA	p.E179K	LAMA1_uc010wzj.1_5'UTR	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	179	Laminin N-terminal.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CAGATCACTTCATCATCAGCC	0.507													13	65					0	0	0.00136819	0	0
LRRC30	339291	broad.mit.edu	37	18	7231221	7231221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:7231221C>T	uc010wzk.1	+	1	85	c.85C>T	c.(85-87)CCG>TCG	p.P29S		NM_001105581	NP_001099051	A6NM36	LRC30_HUMAN	leucine rich repeat containing 30	29										ovary(1)|liver(1)	2						GAAGTTTTCTCCGTGGGACGA	0.607													42	38					0	0	0.00170553	0	0
ANKRD12	23253	broad.mit.edu	37	18	9255124	9255124	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:9255124C>T	uc002knv.2	+	9	2116	c.1859C>T	c.(1858-1860)TCA>TTA	p.S620L	ANKRD12_uc002knw.2_Missense_Mutation_p.S597L|ANKRD12_uc002knx.2_Missense_Mutation_p.S597L|ANKRD12_uc010dkx.1_Missense_Mutation_p.S327L	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	620						nucleus				ovary(2)|central_nervous_system(1)	3						GGTGAAAAATCAAATGCCAAA	0.224													44	76					0	0	0.00285205	0	0
RNMT	8731	broad.mit.edu	37	18	13742548	13742548	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:13742548C>T	uc002ksk.1	+	7	1103	c.1036C>T	c.(1036-1038)CAG>TAG	p.Q346*	RNMT_uc002ksl.1_Nonsense_Mutation_p.Q346*|RNMT_uc002ksm.1_Nonsense_Mutation_p.Q346*|RNMT_uc010dlk.2_Nonsense_Mutation_p.Q346*|RNMT_uc010xae.1_RNA	NM_003799	NP_003790	O43148	MCES_HUMAN	RNA (guanine-7-) methyltransferase	346					mRNA capping|transcription from RNA polymerase II promoter|viral reproduction	nucleoplasm	mRNA (guanine-N7-)-methyltransferase activity|RNA binding				0						TGTGAAATTTCAGAAGAAAGG	0.338													28	116					0	0	0.000720815	0	0
CXADRP3	440224	broad.mit.edu	37	18	14478427	14478427	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:14478427C>T	uc010xai.1	-	3		c.1137G>A				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						GGCGGCACATCTTCCCTGATA	0.458													4	7					0	0	0.000602214	0	0
CXADRP3	440224	broad.mit.edu	37	18	14479245	14479245	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:14479245C>T	uc010xai.1	-	3		c.319G>A				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						CACAGGAGCACGAAGCGCAGC	0.612													9	8					0	0	0.000673444	0	0
LAMA3	3909	broad.mit.edu	37	18	21513856	21513856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:21513856G>A	uc002kuq.2	+	67	8905	c.8819G>A	c.(8818-8820)GGT>GAT	p.G2940D	LAMA3_uc002kur.2_Missense_Mutation_p.G2884D|LAMA3_uc002kus.3_Missense_Mutation_p.G1331D|LAMA3_uc002kut.3_Missense_Mutation_p.G1275D	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	2940					cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TTGCTTAAAGGTTCTACCAGG	0.463													12	78					0	0	0.00136819	0	0
DSC3	1825	broad.mit.edu	37	18	28588235	28588235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:28588235C>T	uc002kwj.3	-	10	1675	c.1520G>A	c.(1519-1521)AGG>AAG	p.R507K	DSC3_uc002kwi.3_Missense_Mutation_p.R507K	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	507	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			TTATTTTTACCTTAAACCATT	0.318													14	32					0	0	0.00400662	0	0
DSC3	1825	broad.mit.edu	37	18	28602348	28602348	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:28602348G>A	uc002kwj.3	-	7	1051	c.896C>T	c.(895-897)CCC>CTC	p.P299L	DSC3_uc002kwi.3_Missense_Mutation_p.P299L	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	299	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			GCCTGTGCTGGGATGCACAGA	0.493													14	63					0	0	0.00316338	0	0
DSC2	1824	broad.mit.edu	37	18	28671000	28671000	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:28671000G>A	uc002kwl.3	-	4	919	c.465C>T	c.(463-465)TTC>TTT	p.F155F	DSC2_uc002kwk.3_Silent_p.F155F	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	155	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			CCTGTTGAAGGAAAAGTGGAA	0.398													10	26					0	0	0.000442599	0	0
DSC1	1823	broad.mit.edu	37	18	28719849	28719849	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:28719849G>A	uc002kwn.2	-	11	1787	c.1525C>T	c.(1525-1527)CAG>TAG	p.Q509*	DSC1_uc002kwm.2_Nonsense_Mutation_p.Q509*	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	509	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			CCTAACTTCTGATACCTAATT	0.294													5	35					0	0	0.00116845	0	0
DSC1	1823	broad.mit.edu	37	18	28720073	28720073	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:28720073G>A	uc002kwn.2	-	10	1714	c.1452C>T	c.(1450-1452)TTC>TTT	p.F484F	DSC1_uc002kwm.2_Silent_p.F484F	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	484	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			GGCCAGCTGGGAAGCCATCTT	0.443													12	80					0	0	0.00185496	0	0
DSG3	1830	broad.mit.edu	37	18	29039109	29039109	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:29039109C>T	uc002kws.2	+	5	595	c.486C>T	c.(484-486)TTC>TTT	p.F162F		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	162	Extracellular (Potential).|Cadherin 2.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AACAAATTTTCATGGGTGAAA	0.323													8	52					0	0	0.000442599	0	0
DSG3	1830	broad.mit.edu	37	18	29052688	29052688	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:29052688G>A	uc002kws.2	+	14	2147	c.2038G>A	c.(2038-2040)GAA>AAA	p.E680K	DSG3_uc002kwt.2_5'Flank	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	680	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TGGTTTGCAGGAAATCACAAA	0.353													11	52					0	0	0.000673444	0	0
DSG2	1829	broad.mit.edu	37	18	29116202	29116202	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:29116202C>T	uc002kwu.3	+	11	1649	c.1461C>T	c.(1459-1461)ATC>ATT	p.I487I		NM_001943	NP_001934	Q14126	DSG2_HUMAN	desmoglein 2 preproprotein	487	Extracellular (Potential).|Cadherin 4.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(2)|breast(1)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			CAGTCCTTATCAATGTTGAAG	0.403													36	47					0	0	0.00222228	0	0
NOL4	8715	broad.mit.edu	37	18	31538286	31538286	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:31538286C>T	uc010dmi.2	-	7	1382	c.1153G>A	c.(1153-1155)GAA>AAA	p.E385K	NOL4_uc010xbs.1_Missense_Mutation_p.E100K|NOL4_uc002kxr.3_Missense_Mutation_p.E221K|NOL4_uc010xbt.1_Missense_Mutation_p.E311K|NOL4_uc010dmh.2_Missense_Mutation_p.E311K|NOL4_uc010xbu.1_Missense_Mutation_p.E385K|NOL4_uc002kxt.3_Missense_Mutation_p.E385K|NOL4_uc010xbv.1_Missense_Mutation_p.E134K|NOL4_uc010xbw.1_Missense_Mutation_p.E271K	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	385						nucleolus	RNA binding			ovary(3)	3						TGGTCATCTTCGTCCTCATCT	0.502													62	104					0	0	0.00361006	0	0
SETBP1	26040	broad.mit.edu	37	18	42531786	42531786	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:42531786G>A	uc010dni.2	+	4	2777	c.2481G>A	c.(2479-2481)TGG>TGA	p.W827*		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	827						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		GTGGAACCTGGAAGCTGTCTC	0.507									Schinzel-Giedion_syndrome				14	71					0	0	0.000566183	0	0
SETBP1	26040	broad.mit.edu	37	18	42532125	42532125	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:42532125G>A	uc010dni.2	+	4	3116	c.2820G>A	c.(2818-2820)AGG>AGA	p.R940R		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	940						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		AGCACAAGAGGAAACGGAAAA	0.527									Schinzel-Giedion_syndrome				22	62					0	0	0.00229938	0	0
SLC14A1	6563	broad.mit.edu	37	18	43319587	43319587	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:43319587G>A	uc010xcn.1	+	9	1225	c.906G>A	c.(904-906)ATG>ATA	p.M302I	SLC14A1_uc010dnk.2_Missense_Mutation_p.M358I|SLC14A1_uc002lbf.3_Missense_Mutation_p.M302I|SLC14A1_uc002lbg.3_RNA|SLC14A1_uc010xco.1_Missense_Mutation_p.M197I|SLC14A1_uc002lbh.3_Missense_Mutation_p.M194I|SLC14A1_uc002lbi.3_Missense_Mutation_p.M170I|SLC14A1_uc002lbj.3_Missense_Mutation_p.M358I|SLC14A1_uc002lbk.3_Missense_Mutation_p.M302I	NM_001146036	NP_001139508	Q13336	UT1_HUMAN	solute carrier family 14 (urea transporter),	302						integral to plasma membrane	urea transmembrane transporter activity			central_nervous_system(1)|pancreas(1)	2						GAATGTTCATGGCGCTCACCT	0.537													19	95					0	0	0.00121646	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555256	44555256	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:44555256T>A	uc010xdb.1	-	1	1194	c.958A>T	c.(958-960)ATG>TTG	p.M320L	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	320	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						TACACCGGCATCTTAGCGTTC	0.657													43	740					0	0	0.00361006	0	0
TCEB3B	51224	broad.mit.edu	37	18	44560008	44560008	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:44560008G>A	uc002lcr.1	-	1	1981	c.1628C>T	c.(1627-1629)GCC>GTC	p.A543V	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	543	Activation domain (By similarity).				regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GTCGCTGAGGGCGTCCGGATT	0.607													91	56					0	0	0.00361006	0	0
KATNAL2	83473	broad.mit.edu	37	18	44627357	44627357	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:44627357G>A	uc002lco.2	+	15	1576	c.1382G>A	c.(1381-1383)AGA>AAA	p.R461K	KATNAL2_uc002lcp.3_Missense_Mutation_p.R388K	NM_031303	NP_112593	Q8IYT4	KATL2_HUMAN	katanin p60 subunit A-like 2	533						cytoplasm|microtubule	ATP binding|microtubule-severing ATPase activity			ovary(1)|skin(1)|central_nervous_system(1)|pancreas(1)	4						GACTGGCAAAGAGAGTTCGAG	0.468											OREG0024959	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	30					0	0	0.00188189	0	0
LIPG	9388	broad.mit.edu	37	18	47101752	47101752	+	Silent	SNP	C	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:47101752C>G	uc002ldv.2	+	5	837	c.585C>G	c.(583-585)GCC>GCG	p.A195A	LIPG_uc002ldu.1_Silent_p.A195A|LIPG_uc010xdh.1_Intron	NM_006033	NP_006024	Q9Y5X9	LIPE_HUMAN	endothelial lipase precursor	195					cholesterol homeostasis|high-density lipoprotein particle remodeling|phospholipid catabolic process|phospholipid homeostasis|positive regulation of cholesterol transport|positive regulation of high-density lipoprotein particle clearance|reverse cholesterol transport	extracellular space	heparin binding|lipoprotein lipase activity|phospholipase A1 activity|protein binding|triglyceride lipase activity			ovary(1)|skin(1)	2						TGGATCCTGCCGGGCCCATGT	0.552													11	57					0	0	0.000978159	0	0
MYO5B	4645	broad.mit.edu	37	18	47431112	47431112	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:47431112C>T	uc002leb.2	-	20	2789	c.2501G>A	c.(2500-2502)AGG>AAG	p.R834K	MYO5B_uc002lea.2_5'Flank	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	834	IQ 3.|Arg-rich.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TCTGCGGACCCTCTGGTAGGC	0.637													15	107					0	0	0.000566183	0	0
MYO5B	4645	broad.mit.edu	37	18	47455914	47455914	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:47455914C>T	uc002leb.2	-	17	2346	c.2058G>A	c.(2056-2058)ACG>ACA	p.T686T		NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	686	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TGATTCGAATCGTCTCCAACA	0.537													9	39					0	0	0.00136819	0	0
STARD6	147323	broad.mit.edu	37	18	51851088	51851088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:51851088C>T	uc010xdt.1	-	6	637	c.637G>A	c.(637-639)GGA>AGA	p.G213R		NM_139171	NP_631910	P59095	STAR6_HUMAN	START domain containing protein 6	213					lipid transport		lipid binding			ovary(1)	1				Colorectal(16;0.021)|READ - Rectum adenocarcinoma(59;0.188)		TGATGAAATCCACGTCTTGAT	0.358													19	82					0	0	0.00278032	0	0
RAB27B	5874	broad.mit.edu	37	18	52544899	52544899	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:52544899G>A	uc002lfr.2	+	2	194	c.83G>A	c.(82-84)AGA>AAA	p.R28K		NM_004163	NP_004154	O00194	RB27B_HUMAN	RAB27B, member RAS oncogene family	28					protein transport|small GTPase mediated signal transduction	Golgi apparatus|plasma membrane	GTP binding|GTPase activity				0				Colorectal(16;0.0273)|READ - Rectum adenocarcinoma(59;0.219)		TTTCTTTATAGATACACAGAT	0.413													19	35					0	0	0.00074312	0	0
RAB27B	5874	broad.mit.edu	37	18	52556538	52556538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:52556538G>A	uc002lfr.2	+	6	662	c.551G>A	c.(550-552)CGA>CAA	p.R184Q		NM_004163	NP_004154	O00194	RB27B_HUMAN	RAB27B, member RAS oncogene family	184					protein transport|small GTPase mediated signal transduction	Golgi apparatus|plasma membrane	GTP binding|GTPase activity				0				Colorectal(16;0.0273)|READ - Rectum adenocarcinoma(59;0.219)		ATCATGAAGCGAATGGAACAG	0.418													11	45					0	0	0.00136819	0	0
TCF4	6925	broad.mit.edu	37	18	52946885	52946885	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:52946885G>A	uc002lfz.2	-	9	1164	c.552C>T	c.(550-552)GTC>GTT	p.V184V	TCF4_uc002lfw.3_Silent_p.V24V|TCF4_uc010xdu.1_Silent_p.V54V|TCF4_uc010xdv.1_Silent_p.V54V|TCF4_uc002lfx.2_Silent_p.V113V|TCF4_uc010xdw.1_Silent_p.V54V|TCF4_uc002lfy.2_Silent_p.V142V|TCF4_uc010xdx.1_Silent_p.V160V|TCF4_uc010dph.1_Silent_p.V184V|TCF4_uc010xdy.1_Silent_p.V160V|TCF4_uc002lga.2_Silent_p.V286V|TCF4_uc002lgb.1_Silent_p.V24V|TCF4_uc010dpi.2_Silent_p.V190V|TCF4_uc002lgc.3_Silent_p.V105V|TCF4_uc002lfv.2_5'UTR	NM_003199	NP_003190	P15884	ITF2_HUMAN	transcription factor 4 isoform b	184					positive regulation of neuron differentiation|protein-DNA complex assembly|transcription initiation from RNA polymerase II promoter	transcription factor complex	E-box binding|protein C-terminus binding|protein heterodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding RNA polymerase recruiting transcription factor activity|TFIIB-class binding transcription factor activity|TFIIB-class transcription factor binding			ovary(1)|lung(1)	2				Colorectal(16;0.00108)|READ - Rectum adenocarcinoma(59;0.0649)|COAD - Colon adenocarcinoma(17;0.0718)		ATGGAGCATAGACCTGAGGAG	0.478													16	78					0	0	0.000566183	0	0
Unknown	0	broad.mit.edu	37	18	54814897	54814897	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:54814897G>A	uc002lgm.2	+	1	562	c.354G>A	c.(352-354)AGG>AGA	p.R118R						RecName: Full=Protein FAM44C;																		GAGTGGACAGGATTAGTTCTC	0.483													11	47					0	0	0.00185496	0	0
ALPK2	115701	broad.mit.edu	37	18	56205220	56205220	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:56205220G>A	uc002lhj.3	-	5	2413	c.2199C>T	c.(2197-2199)TTC>TTT	p.F733F	ALPK2_uc002lhk.1_Silent_p.F64F	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	733							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						GGTCTTCCCTGAAATTGTCAG	0.468													80	134					0	0	0.00361006	0	0
ALPK2	115701	broad.mit.edu	37	18	56246784	56246784	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:56246784T>G	uc002lhj.3	-	4	1438	c.1224A>C	c.(1222-1224)CAA>CAC	p.Q408H		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	408							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						CCCCAACTTCTTGGGGTTGTG	0.562											OREG0025011	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	50					0	0	0.000442599	0	0
SEC11C	90701	broad.mit.edu	37	18	56819910	56819910	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:56819910C>T	uc002lht.2	+	3	396	c.340C>T	c.(340-342)CAT>TAT	p.H114Y	SEC11C_uc010dpo.1_Missense_Mutation_p.H114Y|SEC11C_uc010xej.1_Missense_Mutation_p.H114Y	NM_033280	NP_150596	Q9BY50	SC11C_HUMAN	SEC11-like 3	114	Lumenal (Potential).				energy reserve metabolic process|regulation of insulin secretion|signal peptide processing	endoplasmic reticulum membrane|integral to membrane|microsome	serine-type peptidase activity				0		Colorectal(73;0.175)				AATCAAAGTTCATGAAAAGTA	0.318													23	89					0	0	0.00332997	0	0
MC4R	4160	broad.mit.edu	37	18	58038893	58038893	+	Silent	SNP	G	A	A	rs148026669		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:58038893G>A	uc002lie.1	-	1	1109	c.690C>T	c.(688-690)CCC>CCT	p.P230P		NM_005912	NP_005903	P32245	MC4R_HUMAN	melanocortin 4 receptor	230	Cytoplasmic (Potential).				feeding behavior|G-protein signaling, coupled to cAMP nucleotide second messenger|positive regulation of bone resorption|positive regulation of cAMP biosynthetic process	integral to membrane|plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|ubiquitin protein ligase binding			lung(1)	1		Colorectal(73;0.0946)				CACCAGTGCCGGGGAGGACAG	0.532													13	54					0	0	0.00136819	0	0
RNF152	220441	broad.mit.edu	37	18	59483414	59483414	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:59483414G>A	uc002lih.1	-	2	695	c.283C>T	c.(283-285)CCC>TCC	p.P95S		NM_173557	NP_775828	Q8N8N0	RN152_HUMAN	ring finger protein 152	95					apoptosis|protein K48-linked ubiquitination	integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			breast(1)	1		Colorectal(73;0.186)				CCATTGCTGGGAAGTTTGATG	0.647													13	53					0	0	0.00185496	0	0
TNFRSF11A	8792	broad.mit.edu	37	18	60029004	60029004	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:60029004G>A	uc002lin.2	+	7	746	c.708G>A	c.(706-708)AGG>AGA	p.R236R	TNFRSF11A_uc010dpv.2_Intron	NM_003839	NP_003830	Q9Y6Q6	TNR11_HUMAN	tumor necrosis factor receptor superfamily,	236	Cytoplasmic (Potential).				adaptive immune response|cell-cell signaling|circadian temperature homeostasis|monocyte chemotaxis|osteoclast differentiation|positive regulation of cell proliferation|positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling|positive regulation of fever generation by positive regulation of prostaglandin secretion|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|response to interleukin-1|response to lipopolysaccharide	external side of plasma membrane|integral to membrane	metal ion binding|tumor necrosis factor receptor activity			breast(2)|lung(1)	3		Colorectal(73;0.188)				TTTGCTATAGGAAAAAAGGGA	0.423									Paget_Disease_of_Bone				59	269					0	0	0.00361006	0	0
SERPINB5	5268	broad.mit.edu	37	18	61170677	61170677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:61170677C>T	uc002liz.3	+	7	992	c.850C>T	c.(850-852)CCC>TCC	p.P284S		NM_002639	NP_002630	P36952	SPB5_HUMAN	serine (or cysteine) proteinase inhibitor, clade	284					cellular component movement|regulation of proteolysis	cytoplasm|extracellular space	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)	1						GATGATTGATCCCAAGGCTTG	0.448													60	50					0	0	0.00361006	0	0
SERPINB13	5275	broad.mit.edu	37	18	61264294	61264294	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:61264294G>A	uc002ljc.2	+	8	1041	c.873G>A	c.(871-873)GAG>GAA	p.E291E	SERPINB13_uc002ljd.2_Silent_p.E155E|SERPINB13_uc010xep.1_Silent_p.E300E|SERPINB13_uc010xeq.1_Silent_p.E112E|SERPINB13_uc010xer.1_Silent_p.E112E	NM_012397	NP_036529	Q9UIV8	SPB13_HUMAN	serine (or cysteine) proteinase inhibitor, clade	291					regulation of proteolysis|response to UV	cytoplasm|extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1						TTGAGGTGGAGGACGGTTACG	0.522													26	158					0	0	0.00106085	0	0
SERPINB7	8710	broad.mit.edu	37	18	61471516	61471516	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:61471516C>T	uc002ljl.2	+	8	886	c.790C>T	c.(790-792)CCA>TCA	p.P264S	SERPINB7_uc002ljm.2_Missense_Mutation_p.P264S|SERPINB7_uc010xet.1_Missense_Mutation_p.P247S|SERPINB7_uc010dqg.2_Missense_Mutation_p.P264S	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	264					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				ATGGACCAATCCAAGGCGAAT	0.328													16	19					0	0	0.00400662	0	0
CDH7	1005	broad.mit.edu	37	18	63430132	63430132	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:63430132C>T	uc002ljz.2	+	2	379	c.54C>T	c.(52-54)TTC>TTT	p.F18F	CDH7_uc002lka.2_Silent_p.F18F|CDH7_uc002lkb.2_Silent_p.F18F	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	18					adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				TAGCTCTTTTCCTGTGTTTTT	0.438													4	19					0	0	0.000602214	0	0
DOK6	220164	broad.mit.edu	37	18	67344984	67344984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:67344984G>A	uc002lkl.2	+	4	494	c.304G>A	c.(304-306)GAG>AAG	p.E102K		NM_152721	NP_689934	Q6PKX4	DOK6_HUMAN	docking protein 6	102	PH.						insulin receptor binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Colorectal(73;0.083)|Esophageal squamous(42;0.131)				GGAGGCCGAGGAGTGGTGCAA	0.532													21	119					0	0	0.00152264	0	0
CNDP1	84735	broad.mit.edu	37	18	72228244	72228244	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:72228244G>A	uc002llq.2	+	4	668	c.457G>A	c.(457-459)GAG>AAG	p.E153K	uc002llr.2_5'Flank	NM_032649	NP_116038	Q96KN2	CNDP1_HUMAN	carnosinase 1 precursor	153					proteolysis	extracellular region	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity|tripeptidase activity				0		Esophageal squamous(42;0.129)|Prostate(75;0.157)|Melanoma(33;0.211)		BRCA - Breast invasive adenocarcinoma(31;0.109)		TGTGCTGACGGAGGTAGACGG	0.622													19	63					0	0	0.00152264	0	0
ZADH2	284273	broad.mit.edu	37	18	72913569	72913569	+	Nonsense_Mutation	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:72913569A>C	uc002llx.2	-	2	1204	c.936T>G	c.(934-936)TAT>TAG	p.Y312*	ZADH2_uc010dqv.2_Nonsense_Mutation_p.Y189*	NM_175907	NP_787103	Q8N4Q0	ZADH2_HUMAN	zinc binding alcohol dehydrogenase domain	312						peroxisome	oxidoreductase activity|zinc ion binding				0		Esophageal squamous(42;0.131)|Prostate(75;0.155)		READ - Rectum adenocarcinoma(2;0.0276)|BRCA - Breast invasive adenocarcinoma(31;0.216)		TGGCTGCTTGATACTTAGAAA	0.527													13	55					0	0	0.00185496	0	0
ZNF236	7776	broad.mit.edu	37	18	74563788	74563788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:74563788C>T	uc002lmi.2	+	3	448	c.250C>T	c.(250-252)CAT>TAT	p.H84Y	ZNF236_uc002lmj.2_RNA|ZNF236_uc002lmk.1_Missense_Mutation_p.H84Y	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	84	C2H2-type 2.				cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		CCTGACACTTCATAAATGCAC	0.428													19	41					0	0	0.00152264	0	0
SALL3	27164	broad.mit.edu	37	18	76754347	76754347	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:76754347G>A	uc002lmt.2	+	2	2356	c.2356G>A	c.(2356-2358)GAC>AAC	p.D786N	SALL3_uc010dra.2_Missense_Mutation_p.D393N	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	786					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		GCTGGCCTACGACGACAAGAA	0.652													6	24					0	0	0.00307968	0	0
SALL3	27164	broad.mit.edu	37	18	76754633	76754633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:76754633C>T	uc002lmt.2	+	2	2642	c.2642C>T	c.(2641-2643)TCG>TTG	p.S881L	SALL3_uc010dra.2_Missense_Mutation_p.S488L	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	881					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		GACTCCTCGTCGGCCGTGGGC	0.692													41	29					0	0	0.0025221	0	0
SALL3	27164	broad.mit.edu	37	18	76755226	76755226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:76755226C>T	uc002lmt.2	+	2	3235	c.3235C>T	c.(3235-3237)CCG>TCG	p.P1079S	SALL3_uc010dra.2_Missense_Mutation_p.P614S	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	1079					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		CGAGGGTCCCCCGCTGCCCGC	0.711													8	30					0	0	0.00307968	0	0
KCNG2	26251	broad.mit.edu	37	18	77624240	77624240	+	Silent	SNP	C	T	T	rs140218057	byFrequency	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:77624240C>T	uc010xfl.1	+	1	573	c.573C>T	c.(571-573)GCC>GCT	p.A191A		NM_012283	NP_036415	Q9UJ96	KCNG2_HUMAN	potassium voltage-gated channel, subfamily G,	191	Helical; Name=Segment S1; (Potential).				energy reserve metabolic process|regulation of heart contraction|regulation of insulin secretion	voltage-gated potassium channel complex	delayed rectifier potassium channel activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;6.92e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0244)		CCGTCACGGCCGTGGGCCTCT	0.458													9	43					0	0	0.000978159	0	0
KCNG2	26251	broad.mit.edu	37	18	77659766	77659766	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:77659766G>A	uc010xfl.1	+	2	1351	c.1351G>A	c.(1351-1353)GGC>AGC	p.G451S		NM_012283	NP_036415	Q9UJ96	KCNG2_HUMAN	potassium voltage-gated channel, subfamily G,	451	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of heart contraction|regulation of insulin secretion	voltage-gated potassium channel complex	delayed rectifier potassium channel activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;6.92e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0244)		CGACAGCGCGGGCCTGGCCGA	0.771													3	9					0	0	6.4e-05	0	0
ADNP2	22850	broad.mit.edu	37	18	77895177	77895177	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr18:77895177C>T	uc002lnw.2	+	4	2336	c.1881C>T	c.(1879-1881)CCC>CCT	p.P627P		NM_014913	NP_055728	Q6IQ32	ADNP2_HUMAN	ADNP homeobox 2	627					cellular response to oxidative stress|cellular response to retinoic acid|negative regulation of cell death|neuron differentiation|positive regulation of cell growth	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|breast(3)|central_nervous_system(1)	8		all_cancers(4;1.06e-15)|all_epithelial(4;2.36e-10)|all_lung(4;0.000302)|Lung NSC(4;0.000518)|Esophageal squamous(42;0.0212)|Ovarian(4;0.0256)|all_hematologic(56;0.15)|Melanoma(33;0.2)		Epithelial(2;1.1e-11)|OV - Ovarian serous cystadenocarcinoma(15;7.54e-09)|BRCA - Breast invasive adenocarcinoma(31;0.00247)|STAD - Stomach adenocarcinoma(84;0.164)		TGCCGGTTCCCCCTGGAGGCC	0.617													12	48					0	0	0.00136819	0	0
THEG	51298	broad.mit.edu	37	19	374006	374006	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:374006C>T	uc002lol.2	-	3	476	c.437G>A	c.(436-438)GGA>GAA	p.G146E	THEG_uc002lom.2_Intron	NM_016585	NP_057669	Q9P2T0	THEG_HUMAN	Theg homolog isoform 1	146					cell differentiation|chaperone-mediated protein complex assembly|multicellular organismal development|spermatogenesis	nucleus	protein binding			ovary(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACCACAGCGTCCCTTCCTGCG	0.607													13	6					0	0	0.00316338	0	0
CDC34	997	broad.mit.edu	37	19	535852	535852	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:535852C>T	uc002lov.2	+	2	392	c.193C>T	c.(193-195)CCC>TCC	p.P65S		NM_004359	NP_004350	P49427	UB2R1_HUMAN	ubiquitin-conjugating enzyme Cdc34	65					DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|negative regulation of cAMP-mediated signaling|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination	cytoplasm|nucleus	ATP binding|protein binding|ubiquitin-protein ligase activity				0		all_cancers(10;1.94e-35)|all_epithelial(18;5.94e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCTCAAGTTCCCCATCGACTA	0.637													77	260					0	0	0.00361006	0	0
GAMT	2593	broad.mit.edu	37	19	1397385	1397385	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:1397385C>T	uc002lsj.2	-	6	761	c.684G>A	c.(682-684)ATG>ATA	p.M228I	uc002lsi.1_5'Flank	NM_000156	NP_000147	Q14353	GAMT_HUMAN	guanidinoacetate N-methyltransferase isoform a	228					creatine biosynthetic process|muscle contraction	cytosol	guanidinoacetate N-methyltransferase activity				0		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Lung NSC(49;0.000195)|Breast(49;0.000231)|all_lung(49;0.000247)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)	Creatine(DB00148)	GGGGCGTGATCATCTGTGGGA	0.701													5	25					0	0	0.000602214	0	0
DOT1L	84444	broad.mit.edu	37	19	2226333	2226333	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:2226333C>T	uc002lvb.3	+	27	3849	c.3813C>T	c.(3811-3813)TCC>TCT	p.S1271S	DOT1L_uc002lvc.1_Silent_p.S565S	NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase	1271						nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCAGAACTCCCTGTTCACGT	0.687													6	14					0	0	0.00116845	0	0
HMG20B	10362	broad.mit.edu	37	19	3574509	3574509	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:3574509C>T	uc002lya.2	+	4	344	c.276C>T	c.(274-276)CAC>CAT	p.H92H	HMG20B_uc010dtm.1_3'UTR|HMG20B_uc002lyb.2_5'UTR|HMG20B_uc010xhn.1_Silent_p.H92H	NM_006339	NP_006330	Q9P0W2	HM20B_HUMAN	high-mobility group 20B	92	HMG box.				blood coagulation|cell cycle|chromatin modification	chromosome|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0025)|STAD - Stomach adenocarcinoma(1328;0.18)		GCACGCGCCACCCGGATCTGC	0.667													7	5					0	0	0.000442599	0	0
ATCAY	85300	broad.mit.edu	37	19	3909546	3909546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:3909546G>A	uc002lyy.3	+	7	1140	c.710G>A	c.(709-711)GGT>GAT	p.G237D	ATCAY_uc010xhz.1_Missense_Mutation_p.G243D|ATCAY_uc010dts.2_Translation_Start_Site	NM_033064	NP_149053	Q86WG3	ATCAY_HUMAN	caytaxin	237	CRAL-TRIO.				transport		protein binding			breast(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00485)|STAD - Stomach adenocarcinoma(1328;0.183)		TACCTGAACGGTGCCACGCCC	0.602													9	29					0	0	0.000673444	0	0
ANKRD24	170961	broad.mit.edu	37	19	4222714	4222714	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:4222714G>A	uc010dtt.1	+	20	3495	c.3219G>A	c.(3217-3219)AAG>AAA	p.K1073K		NM_133475	NP_597732	Q8TF21	ANR24_HUMAN	ankyrin repeat domain 24	1073	Potential.										0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0233)|STAD - Stomach adenocarcinoma(1328;0.181)		AAGCCTTGAAGGAGCAGCCGG	0.597													12	16					0	0	0.000978159	0	0
TICAM1	148022	broad.mit.edu	37	19	4816466	4816467	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:4816466_4816467GG>AA	uc002mbi.2	-	2	2174_2175	c.1923_1924CC>TT	c.(1921-1926)CCCCCA>CCTTCA	p.P642S		NM_182919	NP_891549	Q8IUC6	TCAM1_HUMAN	toll-like receptor adaptor molecule 1	642	Sufficient to induce apoptosis.|Pro-rich.			Missing (in Ref. 6; AAO85488).	apoptosis|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	protein kinase binding|signal transducer activity			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		GAGGGCGGTGGGGGGGTGCCAG	0.733													5	17					0	0	6.4e-05	0	0
FUT3	2525	broad.mit.edu	37	19	5844594	5844594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:5844594G>A	uc002mdk.2	-	2	354	c.257C>T	c.(256-258)CCC>CTC	p.P86L	FUT3_uc002mdm.2_Missense_Mutation_p.P86L|FUT3_uc002mdj.2_Missense_Mutation_p.P86L|FUT3_uc002mdl.2_Missense_Mutation_p.P86L|uc002mdn.2_5'Flank	NM_001097641	NP_001091110	P21217	FUT3_HUMAN	fucosyltransferase 3	86	Lumenal (Potential).				protein glycosylation	Golgi cisterna membrane|integral to membrane|membrane fraction	3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity				0						GGCTGTGCCGGGCACCATCTC	0.607													28	107					0	0	0.00178596	0	0
ACER1	125981	broad.mit.edu	37	19	6312178	6312178	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:6312178G>A	uc002mel.2	-	3	410	c.332C>T	c.(331-333)TCC>TTC	p.S111F		NM_133492	NP_597999	Q8TDN7	ACER1_HUMAN	alkaline ceramidase 1	111	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	ceramidase activity				0						CCCAAGGAAGGAGGGGAAATA	0.607													24	26					0	0	0.00395357	0	0
DENND1C	79958	broad.mit.edu	37	19	6468914	6468914	+	Silent	SNP	G	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:6468914G>T	uc002mfe.2	-	20	1550	c.1458C>A	c.(1456-1458)CTC>CTA	p.L486L	DENND1C_uc002mfb.2_Silent_p.L36L|DENND1C_uc002mfc.2_Silent_p.L36L|DENND1C_uc002mfd.2_Silent_p.L36L|DENND1C_uc010xje.1_Silent_p.L442L	NM_024898	NP_079174	Q8IV53	DEN1C_HUMAN	DENN/MADD domain containing 1C	486						clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity			large_intestine(1)	1						AGCGGCTGGGGAGGGCTGGGG	0.622													18	38					5.35356e-11	1.4652e-10	0.00278032	1	0
C3	718	broad.mit.edu	37	19	6707818	6707818	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:6707818C>T	uc002mfm.2	-	15	2030	c.1968G>A	c.(1966-1968)CAG>CAA	p.Q656Q		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	656					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		CACCTGCCCTCTGGGCGGTCT	0.567													22	68					0	0	0.00188189	0	0
CD209	30835	broad.mit.edu	37	19	7809832	7809832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:7809832C>T	uc002mht.2	-	5	962	c.895G>A	c.(895-897)GAG>AAG	p.E299K	CD209_uc010xju.1_Missense_Mutation_p.E138K|CD209_uc010dvp.2_Missense_Mutation_p.E275K|CD209_uc002mhr.2_Missense_Mutation_p.E275K|CD209_uc002mhs.2_Missense_Mutation_p.E229K|CD209_uc002mhu.2_Missense_Mutation_p.E207K|CD209_uc010dvq.2_Missense_Mutation_p.E299K|CD209_uc002mhq.2_Missense_Mutation_p.E299K|CD209_uc002mhv.2_Missense_Mutation_p.E275K|CD209_uc002mhx.2_Missense_Mutation_p.E255K|CD209_uc002mhw.2_Missense_Mutation_p.E163K|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	299	Extracellular (Probable).|C-type lectin.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						TGTACCTGCTCCTCAGCACTT	0.572													19	48					0	0	0.00121646	0	0
EVI5L	115704	broad.mit.edu	37	19	7912715	7912715	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:7912715C>T	uc002min.2	+	3	389	c.235C>T	c.(235-237)CTG>TTG	p.L79L	EVI5L_uc010xjz.1_Silent_p.L79L	NM_145245	NP_660288	Q96CN4	EVI5L_HUMAN	ecotropic viral integration site 5-like isoform	79						intracellular	protein binding|Rab GTPase activator activity			ovary(1)	1						CTCCTCCAACCTGAGCCACCT	0.662													9	21					0	0	0.000274275	0	0
FBN3	84467	broad.mit.edu	37	19	8176551	8176551	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:8176551C>T	uc002mjf.2	-	31	4086	c.4065G>A	c.(4063-4065)GGG>GGA	p.G1355G		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1355	EGF-like 20; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						AGAAGCCATCCCCGGCAAAGC	0.632													15	11					0	0	0.00400662	0	0
FBN3	84467	broad.mit.edu	37	19	8188870	8188870	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:8188870G>A	uc002mjf.2	-	22	2775	c.2754C>T	c.(2752-2754)TTC>TTT	p.F918F		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	918	TB 5.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CCCATCGCAGGAAACATGGTT	0.637													7	23					0	0	0.00198382	0	0
ANGPTL4	51129	broad.mit.edu	37	19	8431165	8431165	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:8431165A>T	uc002mjq.1	+	3	704	c.509A>T	c.(508-510)CAG>CTG	p.Q170L	ANGPTL4_uc002mjr.1_Missense_Mutation_p.Q170L|ANGPTL4_uc010xkc.1_Missense_Mutation_p.Q3L	NM_139314	NP_647475	Q9BY76	ANGL4_HUMAN	angiopoietin-like 4 protein isoform a precursor	170					angiogenesis|cell differentiation|cellular lipid metabolic process|negative regulation of apoptosis|negative regulation of lipoprotein lipase activity|positive regulation of angiogenesis|response to hypoxia|signal transduction|triglyceride homeostasis	extracellular space|proteinaceous extracellular matrix	enzyme inhibitor activity|receptor binding			ovary(1)	1						GAGATGGCCCAGCCAGTTGAC	0.642													30	26					0	0	0.00178596	0	0
HNRNPM	4670	broad.mit.edu	37	19	8538575	8538575	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:8538575G>T	uc010dwe.2	+	11	1105	c.1025G>T	c.(1024-1026)GGA>GTA	p.G342V	HNRNPM_uc010dwc.1_Intron|HNRNPM_uc010xke.1_Intron|HNRNPM_uc010dwd.2_Missense_Mutation_p.G303V|HNRNPM_uc002mka.2_Intron	NM_005968	NP_005959	P52272	HNRPM_HUMAN	heterogeneous nuclear ribonucleoprotein M	342					alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|integral to plasma membrane|nuclear matrix|nucleolus|paraspeckles	nucleotide binding|protein domain specific binding|RNA binding				0						ATAGGATTTGGAATAAATAAA	0.294													35	50					3.66854e-30	1.00952e-29	0.00170553	1	0
OR2Z1	284383	broad.mit.edu	37	19	8841430	8841430	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:8841430C>T	uc010xkg.1	+	1	40	c.40C>T	c.(40-42)CTG>TTG	p.L14L		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						AGACTTCATTCTGGTGGGCCT	0.512													6	39					0	0	0.00116845	0	0
MUC16	94025	broad.mit.edu	37	19	8976641	8976641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:8976641G>A	uc002mkp.2	-	74	42539	c.42335C>T	c.(42334-42336)CCC>CTC	p.P14112L	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.P912L|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	14143	SEA 14.|Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGGAACAAGGGTCTGAGCTT	0.567													14	14					0	0	0.00400662	0	0
MUC16	94025	broad.mit.edu	37	19	9024985	9024985	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:9024985C>T	uc002mkp.2	-	16	37081	c.36877G>A	c.(36877-36879)GGG>AGG	p.G12293R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12295	SEA 2.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGGCTGCCCCATCTTTCTCG	0.552													13	36					0	0	0.00185496	0	0
MUC16	94025	broad.mit.edu	37	19	9046168	9046168	+	Silent	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:9046168A>C	uc002mkp.2	-	5	35667	c.35463T>G	c.(35461-35463)TCT>TCG	p.S11821S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11823	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGGTGAAGAGAGAGGATGTTG	0.493													20	22					0	0	0.00121646	0	0
MUC16	94025	broad.mit.edu	37	19	9048344	9048344	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:9048344C>T	uc002mkp.2	-	5	33491	c.33287G>A	c.(33286-33288)GGA>GAA	p.G11096E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11098	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTCACCACTCCTGATACCCC	0.507													24	29					0	0	0.00278032	0	0
MUC16	94025	broad.mit.edu	37	19	9059164	9059164	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:9059164C>T	uc002mkp.2	-	3	28486	c.28282G>A	c.(28282-28284)GAA>AAA	p.E9428K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9430	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGTTTTTTTCCACAGACAGC	0.502													10	55					0	0	0.000978159	0	0
MUC16	94025	broad.mit.edu	37	19	9062912	9062912	+	Silent	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:9062912A>C	uc002mkp.2	-	3	24738	c.24534T>G	c.(24532-24534)ACT>ACG	p.T8178T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8180	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTTCTGTGGAAGTCTCTGGTG	0.507													11	40					0	0	0.00244969	0	0
MUC16	94025	broad.mit.edu	37	19	9067341	9067341	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:9067341G>A	uc002mkp.2	-	3	20309	c.20105C>T	c.(20104-20106)CCA>CTA	p.P6702L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6704	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATCAGGGCCTGGAATGGATGT	0.478													37	154					0	0	0.00111076	0	0
MUC16	94025	broad.mit.edu	37	19	9068288	9068288	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:9068288G>A	uc002mkp.2	-	3	19362	c.19158C>T	c.(19156-19158)GTC>GTT	p.V6386V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6388	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTTTGTCAAAGACCGTGCTTG	0.463													11	46					0	0	0.000673444	0	0
MUC16	94025	broad.mit.edu	37	19	9068704	9068704	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:9068704G>A	uc002mkp.2	-	3	18946	c.18742C>T	c.(18742-18744)CTT>TTT	p.L6248F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6250	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACAGAAACAAGAGAGGAGGTA	0.478													39	35					0	0	0.00170553	0	0
MUC16	94025	broad.mit.edu	37	19	9071966	9071966	+	Silent	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:9071966C>A	uc002mkp.2	-	3	15684	c.15480G>T	c.(15478-15480)GTG>GTT	p.V5160V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5162	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGGATCTCCCACAGTGGTGG	0.478													9	268					3.86212e-05	0.000105358	0.000673444	1	0
MUC16	94025	broad.mit.edu	37	19	9072482	9072482	+	Silent	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:9072482A>T	uc002mkp.2	-	3	15168	c.14964T>A	c.(14962-14964)ACT>ACA	p.T4988T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4990	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCATGGTAAAAGTATCCTGTG	0.468													23	40					0	0	0.000720815	0	0
MUC16	94025	broad.mit.edu	37	19	9074153	9074153	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:9074153G>A	uc002mkp.2	-	3	13497	c.13293C>T	c.(13291-13293)CTC>CTT	p.L4431L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4433	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTTTGCTTATGAGAGTGGTCT	0.488													26	104					0	0	0.000720815	0	0
MUC16	94025	broad.mit.edu	37	19	9077737	9077737	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:9077737G>A	uc002mkp.2	-	3	9913	c.9709C>T	c.(9709-9711)CCC>TCC	p.P3237S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3238	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCTCCATGGGAACAGTTGTT	0.527													38	115					0	0	0.00170553	0	0
MUC16	94025	broad.mit.edu	37	19	9085246	9085246	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:9085246G>A	uc002mkp.2	-	1	6773	c.6569C>T	c.(6568-6570)TCT>TTT	p.S2190F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2190	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGAAACCAAAGACTCTGAAGT	0.463													10	32					0	0	0.000673444	0	0
MUC16	94025	broad.mit.edu	37	19	9085456	9085456	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:9085456G>A	uc002mkp.2	-	1	6563	c.6359C>T	c.(6358-6360)ACT>ATT	p.T2120I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2120	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTGTTCAAAGTACTCGCGGC	0.488													83	72					0	0	0.00361006	0	0
MUC16	94025	broad.mit.edu	37	19	9086274	9086274	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:9086274G>A	uc002mkp.2	-	1	5745	c.5541C>T	c.(5539-5541)CTC>CTT	p.L1847L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1847	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCCCATGGCTGAGGTCAAGTG	0.502													11	51					0	0	0.000978159	0	0
MUC16	94025	broad.mit.edu	37	19	9091626	9091626	+	Silent	SNP	G	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:9091626G>T	uc002mkp.2	-	1	393	c.189C>A	c.(187-189)ACC>ACA	p.T63T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	63	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GACTGGCCAAGGTCTTATCTG	0.512													12	55					6.40141e-05	0.000174567	0.000978159	1	0
ZNF699	374879	broad.mit.edu	37	19	9406533	9406533	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:9406533G>A	uc002mlc.1	-	5	1547	c.1547C>T	c.(1546-1548)TCC>TTC	p.S516F		NM_198535	NP_940937	Q32M78	ZN699_HUMAN	zinc finger protein 699	516	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGTAAGGTGGGAGGAACTAAT	0.443													10	33					0	0	0.000978159	0	0
ZNF560	147741	broad.mit.edu	37	19	9577548	9577548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:9577548G>A	uc002mlp.1	-	10	2285	c.2075C>T	c.(2074-2076)TCC>TTC	p.S692F	ZNF560_uc010dwr.1_Missense_Mutation_p.S586F	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	692					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						ATTTCGAAAGGAATTTCCACA	0.378													35	117					0	0	0.00111076	0	0
C3P1	388503	broad.mit.edu	37	19	10157457	10157457	+	RNA	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:10157457G>A	uc010dwx.1	+	9		c.1291G>A				NR_027300				Synthetic construct DNA, clone: pF1KB7402, Homo sapiens LOC388503 gene, without stop codon, in Flexi system.												0						ATGCCTGTGCGGACCTTGTTC	0.527													13	69					0	0	0.00185496	0	0
TYK2	7297	broad.mit.edu	37	19	10467345	10467345	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:10467345G>A	uc002moc.3	-	18	2894	c.2516C>T	c.(2515-2517)CCA>CTA	p.P839L	TYK2_uc010dxe.2_Missense_Mutation_p.P654L	NM_003331	NP_003322	P29597	TYK2_HUMAN	tyrosine kinase 2	839	Protein kinase 1.				intracellular protein kinase cascade|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|large_intestine(2)|ovary(1)|breast(1)	9			OV - Ovarian serous cystadenocarcinoma(20;1.77e-09)|Epithelial(33;3.92e-06)|all cancers(31;8.95e-06)			GGCCAGCTGTGGGCAGGAGGG	0.637													4	15					0	0	0.000602214	0	0
CCDC159	126075	broad.mit.edu	37	19	11460799	11460799	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:11460799C>T	uc010xlw.1	+	5	478	c.399C>T	c.(397-399)TTC>TTT	p.F133F	CCDC159_uc010xlr.1_Silent_p.F50F|CCDC159_uc010xls.1_Silent_p.F50F|CCDC159_uc010xlt.1_Silent_p.F50F|CCDC159_uc010xlu.1_Silent_p.F49F|CCDC159_uc010xlv.1_Silent_p.F49F	NM_001080503	NP_001073972	P0C7I6	CC159_HUMAN	coiled-coil domain-containing-like	165										ovary(1)	1						CCCAGGCTTTCGAGTTCCTGA	0.562													5	21					0	0	0.000602214	0	0
CCDC159	126075	broad.mit.edu	37	19	11464191	11464191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:11464191C>T	uc010xlw.1	+	9	960	c.881C>T	c.(880-882)CCG>CTG	p.P294L	CCDC159_uc010xls.1_Missense_Mutation_p.P211L|CCDC159_uc010xlt.1_Missense_Mutation_p.P211L|LPPR2_uc002mre.1_5'Flank|LPPR2_uc002mrf.1_5'Flank	NM_001080503	NP_001073972	P0C7I6	CC159_HUMAN	coiled-coil domain-containing-like	326										ovary(1)	1						GAAGAGATACCGCAGGGAGCC	0.567													5	24					0	0	0.00116845	0	0
ZNF627	199692	broad.mit.edu	37	19	11725377	11725377	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:11725377C>T	uc002msk.2	+	2	247	c.39C>T	c.(37-39)TTC>TTT	p.F13F	ZNF627_uc010dyf.2_5'UTR	NM_145295	NP_660338	Q7L945	ZN627_HUMAN	zinc finger protein 627	13	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CTGTGAACTTCACCCTGGAGG	0.488													27	90					0	0	0.00127121	0	0
ZNF439	90594	broad.mit.edu	37	19	11978400	11978400	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:11978400C>T	uc002mss.2	+	3	644	c.516C>T	c.(514-516)TCC>TCT	p.S172S	ZNF439_uc002msr.2_Silent_p.S36S	NM_152262	NP_689475	Q8NDP4	ZN439_HUMAN	zinc finger protein 439	172					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						ATCACCCCTCCTTGAGAACAC	0.413													24	105					0	0	0.00278032	0	0
MAN2B1	4125	broad.mit.edu	37	19	12769085	12769085	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:12769085G>A	uc002mub.2	-	9	1259	c.1183C>T	c.(1183-1185)CGG>TGG	p.R395W	MAN2B1_uc010dyv.1_Missense_Mutation_p.R394W	NM_000528	NP_000519	O00754	MA2B1_HUMAN	mannosidase, alpha, class 2B, member 1	395					protein deglycosylation	lysosome	alpha-mannosidase activity|zinc ion binding			ovary(4)|central_nervous_system(2)	6						AGGGCCGGCCGACTGGAAAAG	0.632													27	38					0	0	0.00178596	0	0
BEST2	54831	broad.mit.edu	37	19	12866691	12866691	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:12866691C>T	uc002mux.2	+	7	890	c.890C>T	c.(889-891)CCC>CTC	p.P297L		NM_017682	NP_060152	Q8NFU1	BEST2_HUMAN	vitelliform macular dystrophy 2-like 1	297	Cytoplasmic (Potential).				membrane depolarization|sensory perception of smell	chloride channel complex|cilium|plasma membrane	chloride channel activity			ovary(1)|pancreas(1)	2						CTCATCAACCCCTTCGGAGAG	0.537													14	61					0	0	0.00074312	0	0
RNASEH2A	10535	broad.mit.edu	37	19	12924217	12924218	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:12924217_12924218CC>TT	uc002mvg.1	+	8	897_898	c.837_838CC>TT	c.(835-840)GCCCGT>GCTTGT	p.R280C	RNASEH2A_uc002mvf.1_Missense_Mutation_p.R198C	NM_006397	NP_006388	O75792	RNH2A_HUMAN	ribonuclease H2, large subunit	280					DNA replication|RNA catabolic process	nucleus|ribonuclease H2 complex	metal ion binding|ribonuclease H activity|RNA binding			breast(2)|central_nervous_system(1)	3						GGTCCCAAGCCCGTCCCCGTTC	0.579													19	42					0	0	6.4e-05	0	0
MAST1	22983	broad.mit.edu	37	19	12981851	12981851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:12981851G>A	uc002mvm.2	+	24	3256	c.3128G>A	c.(3127-3129)AGT>AAT	p.S1043N		NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	1043	PDZ.				cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						TTCCCCCAGAGTGGCAACAAG	0.592													47	63					0	0	0.00361006	0	0
GCDH	2639	broad.mit.edu	37	19	13006835	13006835	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:13006835C>T	uc002mvq.2	+	7	612	c.535C>T	c.(535-537)CTC>TTC	p.L179F	GCDH_uc010xms.1_Missense_Mutation_p.L146F|GCDH_uc002mvp.2_Missense_Mutation_p.L179F|GCDH_uc010xmt.1_Silent_p.G24G|GCDH_uc010xmu.1_Missense_Mutation_p.L135F	NM_000159	NP_000150	Q92947	GCDH_HUMAN	glutaryl-Coenzyme A dehydrogenase isoform a	179	FAD.		L -> R (in GA1).		lysine catabolic process	mitochondrial matrix	flavin adenine dinucleotide binding|glutaryl-CoA dehydrogenase activity|protein binding				0						CTGCTTCGGGCTCACAGAGCC	0.562													31	94					0	0	0.001512	0	0
NACC1	112939	broad.mit.edu	37	19	13246315	13246315	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:13246315C>T	uc002mwm.2	+	2	462	c.294C>T	c.(292-294)TTC>TTT	p.F98F		NM_052876	NP_443108	Q96RE7	NACC1_HUMAN	transcriptional repressor NAC1	98					negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|protein homooligomerization|transcription, DNA-dependent	cytoplasm|nuclear body					0						GCGACCAGTTCCTGCTCATGT	0.627													14	23					0	0	0.00244969	0	0
CC2D1A	54862	broad.mit.edu	37	19	14037683	14037683	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:14037683C>T	uc002mxo.2	+	20	2422	c.2123C>T	c.(2122-2124)CCT>CTT	p.P708L	CC2D1A_uc002mxp.2_Missense_Mutation_p.P708L|CC2D1A_uc010dzh.2_Missense_Mutation_p.P277L|CC2D1A_uc002mxq.1_Missense_Mutation_p.P353L	NM_017721	NP_060191	Q6P1N0	C2D1A_HUMAN	coiled-coil and C2 domain containing 1A	708	C2.				positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus|plasma membrane	DNA binding|signal transducer activity				0			OV - Ovarian serous cystadenocarcinoma(19;3.49e-23)			ACAGACTCCCCTGGTGAGCCT	0.562													18	48					0	0	0.00152264	0	0
EMR2	30817	broad.mit.edu	37	19	14862260	14862260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:14862260C>T	uc002mzp.1	-	16	2468	c.2012G>A	c.(2011-2013)GGA>GAA	p.G671E	EMR2_uc010dzs.1_Missense_Mutation_p.G130E|EMR2_uc010xnw.1_Missense_Mutation_p.G613E|EMR2_uc002mzo.1_Missense_Mutation_p.G660E|EMR2_uc002mzq.1_Missense_Mutation_p.G611E|EMR2_uc002mzr.1_Missense_Mutation_p.G622E|EMR2_uc002mzs.1_Missense_Mutation_p.G529E|EMR2_uc002mzt.1_Missense_Mutation_p.G567E|EMR2_uc002mzu.1_Missense_Mutation_p.G578E|EMR2_uc010xnx.1_RNA|EMR2_uc010xny.1_RNA	NM_013447	NP_038475	Q9UHX3	EMR2_HUMAN	egf-like module containing, mucin-like, hormone	671	Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			lung(2)|ovary(1)|skin(1)	4						GGAAGGTGTTCCATAAAGGTG	0.483													23	89					0	0	0.00395357	0	0
CCDC105	126402	broad.mit.edu	37	19	15124546	15124546	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:15124546G>A	uc002nae.2	+	2	732	c.633G>A	c.(631-633)AGG>AGA	p.R211R		NM_173482	NP_775753	Q8IYK2	CC105_HUMAN	coiled-coil domain containing 105	211	Potential.				microtubule cytoskeleton organization	microtubule				ovary(1)	1						GCATGAAGAGGAAAATGGAGA	0.488													6	21					0	0	0.00198382	0	0
CCDC105	126402	broad.mit.edu	37	19	15132229	15132229	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:15132229A>T	uc002nae.2	+	4	1038	c.939A>T	c.(937-939)GAA>GAT	p.E313D		NM_173482	NP_775753	Q8IYK2	CC105_HUMAN	coiled-coil domain containing 105	313	Potential.				microtubule cytoskeleton organization	microtubule				ovary(1)	1						CCTTGGTAGAAATGGCAAAGA	0.602													31	20					0	0	0.00327116	0	0
NOTCH3	4854	broad.mit.edu	37	19	15271653	15271653	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:15271653G>A	uc002nan.2	-	33	6862	c.6786C>T	c.(6784-6786)TCC>TCT	p.S2262S		NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	2262	Cytoplasmic (Potential).				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			AGTCTGAGAGGGAGGGAGGTG	0.677													15	50					0	0	0.00400662	0	0
BRD4	23476	broad.mit.edu	37	19	15350470	15350470	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:15350470G>A	uc002nar.2	-	16	3667	c.3445C>T	c.(3445-3447)CGG>TGG	p.R1149W		NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	1149					interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			GAGCACTCACGCTGGGGCAGG	0.701			T	NUT|C15orf55	lethal midline carcinoma of young people								40	40					0	0	0.00195071	0	0
CYP4F3	4051	broad.mit.edu	37	19	15769554	15769554	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:15769554C>T	uc002nbj.2	+	12	1382	c.1332C>T	c.(1330-1332)CGC>CGT	p.R444R	CYP4F3_uc010xok.1_Silent_p.R444R|CYP4F3_uc010xol.1_Silent_p.R444R|CYP4F3_uc010xom.1_Silent_p.R295R|CYP4F3_uc002nbk.2_Silent_p.R444R|CYP4F3_uc010xon.1_Silent_p.R154R	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	444					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						ACCCCTTTCGCTTTGACCCAA	0.592													36	93					0	0	0.00111076	0	0
CYP4F12	66002	broad.mit.edu	37	19	15784509	15784509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:15784509G>A	uc002nbl.2	+	2	231	c.170G>A	c.(169-171)CGG>CAG	p.R57Q	CYP4F12_uc010xoo.1_Missense_Mutation_p.R57Q|CYP4F12_uc010xop.1_Missense_Mutation_p.R57Q	NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					CCCCCAAAACGGAACTGGTTT	0.587													31	77					0	0	0.00178596	0	0
OR10H3	26532	broad.mit.edu	37	19	15852289	15852289	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:15852289C>T	uc010xoq.1	+	1	87	c.87C>T	c.(85-87)TTC>TTT	p.F29F		NM_013938	NP_039226	O60404	O10H3_HUMAN	olfactory receptor, family 10, subfamily H,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTGTCTTGTTCCTGCTGTACC	0.493													59	186					0	0	0.00361006	0	0
Unknown	0	broad.mit.edu	37	19	15880414	15880414	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:15880414C>T	uc002nbo.2	-	8		c.1280G>A								Homo sapiens cDNA FLJ60024 complete cds, highly similar to Cytochrome P450 4F12 (EC 1.14.14.1).																		TCTTTAGGATCGCGGTCCTTC	0.562													18	66					0	0	0.00152264	0	0
CALR3	125972	broad.mit.edu	37	19	16590049	16590049	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:16590049C>T	uc002ned.2	-	9	1111	c.1048G>A	c.(1048-1050)GAG>AAG	p.E350K	MED26_uc002nee.2_RNA	NM_145046	NP_659483	Q96L12	CALR3_HUMAN	calreticulin 3 precursor	350	Glu/Lys-rich.|C-domain.				protein folding	endoplasmic reticulum lumen	calcium ion binding|sugar binding|unfolded protein binding				0						TTCATTTCCTCCTTGGCCTGT	0.388													32	132					0	0	0.0024448	0	0
TMEM38A	79041	broad.mit.edu	37	19	16799065	16799065	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:16799065C>T	uc002nes.2	+	6	874	c.783C>T	c.(781-783)AAC>AAT	p.N261N		NM_024074	NP_076979	Q9H6F2	TM38A_HUMAN	transmembrane protein 38A	261	Cytoplasmic (Potential).					integral to membrane|nuclear membrane|sarcoplasmic reticulum membrane	potassium channel activity			central_nervous_system(2)|ovary(1)	3						ACCACGACAACCATGGTGGGT	0.637													33	91					0	0	0.00178596	0	0
SIN3B	23309	broad.mit.edu	37	19	16976290	16976290	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:16976290C>T	uc002ney.1	+	12	1563	c.1549C>T	c.(1549-1551)CGG>TGG	p.R517W	SIN3B_uc002nez.1_Missense_Mutation_p.R485W|SIN3B_uc010xpi.1_Missense_Mutation_p.R75W	NM_015260	NP_056075	O75182	SIN3B_HUMAN	SIN3 homolog B, transcription regulator	517	Interaction with SDS3 and HDAC1 (By similarity).|Interaction with NCOR1 (By similarity).				cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	protein binding			ovary(2)	2						GAAGCTATCTCGGATGGCGCC	0.582													37	45					0	0	0.00128727	0	0
CPAMD8	27151	broad.mit.edu	37	19	17038926	17038926	+	Missense_Mutation	SNP	C	T	T	rs61742969		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:17038926C>T	uc002nfb.2	-	25	3436	c.3404G>A	c.(3403-3405)CGA>CAA	p.R1135Q		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1088						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						CCTCCAGATTCGGAATTCACC	0.627													40	56					0	0	0.00222228	0	0
CPAMD8	27151	broad.mit.edu	37	19	17091442	17091442	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:17091442G>A	uc002nfb.2	-	14	1623	c.1591C>T	c.(1591-1593)CTG>TTG	p.L531L		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	484						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						TCGTAGTACAGGGTAAAGTTG	0.592													45	55					0	0	0.00361006	0	0
ANKLE1	126549	broad.mit.edu	37	19	17396343	17396343	+	Missense_Mutation	SNP	C	T	T	rs149727291		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:17396343C>T	uc002nga.2	+	7	1756	c.1480C>T	c.(1480-1482)CGG>TGG	p.R494W	ANKLE1_uc010xpm.1_RNA|ANKLE1_uc010eao.1_Missense_Mutation_p.R490W|ANKLE1_uc010xpn.1_Missense_Mutation_p.R522W|ANKLE1_uc002nfy.2_Missense_Mutation_p.R457W|ANKLE1_uc002nfz.2_Missense_Mutation_p.R200W	NM_152363	NP_689576	Q8NAG6	ANKL1_HUMAN	ankyrin repeat domain 41	494						nuclear envelope					0						GACGAGGGCCCGGCCATATGT	0.617													39	112					0	0	0.00128727	0	0
FKBP8	23770	broad.mit.edu	37	19	18650451	18650451	+	Silent	SNP	G	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:18650451G>T	uc002njk.1	-	3	485	c.372C>A	c.(370-372)ACC>ACA	p.T124T	FKBP8_uc002nji.1_5'UTR|FKBP8_uc010xqi.1_Silent_p.T153T|FKBP8_uc002njj.1_Silent_p.T124T|FKBP8_uc002njl.1_Silent_p.T124T|FKBP8_uc002njm.1_Silent_p.T124T|FKBP8_uc010ebr.1_Intron|FKBP8_uc002njn.2_RNA	NM_012181	NP_036313	Q14318	FKBP8_HUMAN	FK506-binding protein 8	124	PPIase FKBP-type.				apoptosis|interspecies interaction between organisms|intracellular signal transduction|protein folding	integral to endoplasmic reticulum membrane|mitochondrial membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity|protein binding			ovary(1)	1						GCAGATGTACGGTGACCACCT	0.652													9	253					0.000978159	0.00265786	0.000978159	1	0
CRLF1	9244	broad.mit.edu	37	19	18707711	18707711	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:18707711C>T	uc010ebt.1	-	5	1040	c.846G>A	c.(844-846)GTG>GTA	p.V282V		NM_004750	NP_004741	O75462	CRLF1_HUMAN	cytokine receptor-like factor 1 precursor	282	Fibronectin type-III 2.				negative regulation of neuron apoptosis|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of Stat3 protein	extracellular space	cytokine binding|protein heterodimerization activity|receptor activity			central_nervous_system(1)	1						CCTTCCAGTCCACACTGTCCT	0.348													13	53					0	0	0.00136819	0	0
KLHL26	55295	broad.mit.edu	37	19	18775173	18775173	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:18775173C>T	uc002njz.1	+	2	213	c.186C>T	c.(184-186)CTC>CTT	p.L62L		NM_018316	NP_060786	Q53HC5	KLH26_HUMAN	kelch-like 26	62										ovary(1)	1						AGGGCCAGCTCCTCGATGTTG	0.637													54	139					0	0	0.00361006	0	0
HAPLN4	404037	broad.mit.edu	37	19	19368843	19368843	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:19368843G>A	uc002nmb.2	-	5	1047	c.992C>T	c.(991-993)CCC>CTC	p.P331L	HAPLN4_uc002nmc.2_Missense_Mutation_p.P331L	NM_023002	NP_075378	Q86UW8	HPLN4_HUMAN	hyaluronan and proteoglycan link protein 4	331	Link 2.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			pancreas(1)	1			Epithelial(12;0.00575)			GTTCACGATGGGGTAGCGCGC	0.721													3	3					0	0	6.4e-05	0	0
NDUFA13	51079	broad.mit.edu	37	19	19646234	19646234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:19646234C>T	uc010xqy.1	+	6	1023	c.764C>T	c.(763-765)CCC>CTC	p.P255L	YJEFN3_uc002nmt.1_Missense_Mutation_p.P173L|YJEFN3_uc010ecf.1_Missense_Mutation_p.P123L|YJEFN3_uc002nmu.1_RNA|CILP2_uc002nmv.3_5'Flank|CILP2_uc002nmw.3_5'Flank	NM_015965	NP_057049	Q9P0J0	NDUAD_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	Error:Variant_position_missing_in_Q9P0J0_after_alignment					apoptotic nuclear change|induction of apoptosis by extracellular signals|negative regulation of cell growth|negative regulation of transcription, DNA-dependent|negative regulation of translation|protein import into nucleus|reactive oxygen species metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain complex I|nucleoplasm	ATP binding|NADH dehydrogenase (ubiquinone) activity|protein binding				0					NADH(DB00157)	ATGGACATCCCCTTCCTGAGC	0.642													14	14					0	0	0.00244969	0	0
ATP13A1	57130	broad.mit.edu	37	19	19757947	19757947	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:19757947G>A	uc002nnh.3	-	22	3124	c.3096C>T	c.(3094-3096)TCC>TCT	p.S1032S	ATP13A1_uc002nne.2_Silent_p.S172S|ATP13A1_uc002nnf.3_Silent_p.S400S|ATP13A1_uc002nng.2_Silent_p.S914S	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	1032	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(3)|large_intestine(2)|central_nervous_system(1)	6						CCTTGGAACGGGAGATGAAGA	0.612													14	62					0	0	0.00316338	0	0
ZNF253	56242	broad.mit.edu	37	19	20002848	20002848	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:20002848C>T	uc002noj.2	+	4	884	c.792C>T	c.(790-792)GCC>GCT	p.A264A	ZNF253_uc002nok.2_Silent_p.A188A|ZNF253_uc002nol.2_RNA	NM_021047	NP_066385	O75346	ZN253_HUMAN	zinc finger protein 253	264	C2H2-type 4.			Missing (in Ref. 1; AAC26844).	negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTGGCAAAGCCTTCAACCGAT	0.413													10	28					0	0	0.000442599	0	0
ZNF486	90649	broad.mit.edu	37	19	20307999	20307999	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:20307999G>A	uc002nou.2	+	4	537	c.480G>A	c.(478-480)GTG>GTA	p.V160V		NM_052852	NP_443084	Q96H40	ZN486_HUMAN	zinc finger protein 486	160	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GTAAATATGTGAAAGTCTTTC	0.303													18	85					0	0	0.00152264	0	0
LOC284441	284441	broad.mit.edu	37	19	20369960	20369960	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:20369960G>A	uc002nov.2	+	1	1504	c.753G>A	c.(751-753)GGG>GGA	p.G251G		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						TTTCTGGAGGGTCTACTATGT	0.398													13	51					0	0	0.00185496	0	0
ZNF429	353088	broad.mit.edu	37	19	21720110	21720110	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:21720110C>T	uc002nqd.1	+	4	1392	c.1255C>T	c.(1255-1257)CAT>TAT	p.H419Y	ZNF429_uc010ecu.1_Intron	NM_001001415	NP_001001415	Q86V71	ZN429_HUMAN	zinc finger protein 429	419	C2H2-type 10; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CAAGAAAATTCATACTGGAGA	0.353													12	35					0	0	0.00136819	0	0
ZNF99	7652	broad.mit.edu	37	19	22940868	22940868	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:22940868G>A	uc010xrh.1	-	5	1570	c.1570C>T	c.(1570-1572)CAT>TAT	p.H524Y		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TTTCCAGTATGAATTATCTGA	0.383													9	16					0	0	0.000673444	0	0
ZNF536	9745	broad.mit.edu	37	19	31025854	31025854	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:31025854G>A	uc002nsu.1	+	3	2409	c.2271G>A	c.(2269-2271)GGG>GGA	p.G757G	ZNF536_uc010edd.1_Silent_p.G757G	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	757	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CGTACTGTGGGAAAACTTTCC	0.597													35	98					0	0	0.00428921	0	0
ZNF536	9745	broad.mit.edu	37	19	31039511	31039511	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:31039511G>A	uc002nsu.1	+	4	3123	c.2985G>A	c.(2983-2985)CAG>CAA	p.Q995Q	ZNF536_uc010edd.1_Silent_p.Q995Q	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	995					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					TAACTGTGCAGGACAGCATTG	0.582													28	78					0	0	0.000720815	0	0
TSHZ3	57616	broad.mit.edu	37	19	31767939	31767939	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:31767939C>T	uc002nsy.3	-	2	2825	c.2760G>A	c.(2758-2760)GGG>GGA	p.G920G		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	920	Homeobox; atypical.				negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					TGATGTACTTCCCTTCTGAGG	0.622													13	54					0	0	0.00244969	0	0
TSHZ3	57616	broad.mit.edu	37	19	31768792	31768792	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:31768792G>A	uc002nsy.3	-	2	1972	c.1907C>T	c.(1906-1908)TCC>TTC	p.S636F		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	636					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					CTTGGGCGGGGAAAGCTTCCC	0.577													22	35					0	0	0.00188189	0	0
RGS9BP	388531	broad.mit.edu	37	19	33167751	33167751	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:33167751C>T	uc002ntp.1	+	1	1439	c.582C>T	c.(580-582)TCC>TCT	p.S194S	ANKRD27_uc002ntn.1_5'Flank|ANKRD27_uc002nto.1_5'Flank	NM_207391	NP_997274	Q6ZS82	R9BP_HUMAN	RGS9 anchor protein	194	SNARE-like (By similarity).|Cytoplasmic (Potential).				negative regulation of signal transduction	integral to membrane				central_nervous_system(1)	1	Esophageal squamous(110;0.137)					CCGGCCCCTCCTCGGTCGTGT	0.716													8	12					0	0	0.000274275	0	0
KIAA0355	9710	broad.mit.edu	37	19	34833008	34833008	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:34833008C>T	uc002nvd.3	+	10	3028	c.2169C>T	c.(2167-2169)TCC>TCT	p.S723S		NM_014686	NP_055501	O15063	K0355_HUMAN	hypothetical protein LOC9710	723										ovary(1)	1	Esophageal squamous(110;0.162)					AGCAGCAGTCCCCAAAGCAGC	0.657													25	90					0	0	0.00332997	0	0
MAG	4099	broad.mit.edu	37	19	35801058	35801058	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:35801058G>A	uc002nyy.1	+	8	1662	c.1513G>A	c.(1513-1515)GGA>AGA	p.G505R	MAG_uc002nyx.1_Missense_Mutation_p.G505R|MAG_uc010eds.1_Missense_Mutation_p.G480R|MAG_uc002nyz.1_Missense_Mutation_p.G505R	NM_002361	NP_002352	P20916	MAG_HUMAN	myelin associated glycoprotein isoform a	505	Ig-like C2-type 4.|Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane	sugar binding			breast(3)|lung(2)|central_nervous_system(1)|skin(1)	7	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)	Renal(1328;0.242)	Epithelial(14;3.14e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.5e-18)|all cancers(14;1.5e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)			GCCCTTCCAGGGAGCCCGTGA	0.677													23	21					0	0	0.00278032	0	0
CD22	933	broad.mit.edu	37	19	35823503	35823503	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:35823503G>A	uc010edt.2	+	3	165	c.88G>A	c.(88-90)GAA>AAA	p.E30K	CD22_uc010xst.1_5'UTR|CD22_uc010edu.2_Missense_Mutation_p.E30K|CD22_uc010edv.2_Missense_Mutation_p.E30K|CD22_uc002nzb.3_Missense_Mutation_p.E30K	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	30	Extracellular (Potential).|Ig-like V-type.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	TGAGCACCCTGAAACCCTCTA	0.512													23	80					0	0	0.00188189	0	0
ATP4A	495	broad.mit.edu	37	19	36050865	36050865	+	Missense_Mutation	SNP	C	T	T	rs140861099		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:36050865C>T	uc002oal.1	-	7	927	c.898G>A	c.(898-900)GAG>AAG	p.E300K	ATP4A_uc010eee.1_5'Flank	NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	300	Helical; (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	ACAAAATGCTCGATCTCGATA	0.582													15	86					0	0	0.000566183	0	0
ZNF585B	92285	broad.mit.edu	37	19	37677213	37677213	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:37677213G>A	uc002ofq.2	-	5	1480	c.1226C>T	c.(1225-1227)TCG>TTG	p.S409L	uc002ofp.1_5'Flank|ZNF585B_uc002ofr.1_Missense_Mutation_p.S223L	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	409					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GCATATATACGATTTTTCTCC	0.423													40	52					0	0	0.00148497	0	0
ZNF585B	92285	broad.mit.edu	37	19	37677298	37677298	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:37677298G>A	uc002ofq.2	-	5	1395	c.1141C>T	c.(1141-1143)CCT>TCT	p.P381S	uc002ofp.1_5'Flank|ZNF585B_uc002ofr.1_Missense_Mutation_p.P195S	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	381					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CATTCATAAGGTTTCTCTCCA	0.413													23	84					0	0	0.000878237	0	0
ZNF527	84503	broad.mit.edu	37	19	37879873	37879873	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:37879873G>A	uc010efk.1	+	5	1033	c.922G>A	c.(922-924)GGA>AGA	p.G308R	ZNF527_uc002ogf.3_Missense_Mutation_p.G276R|ZNF527_uc010xtq.1_RNA	NM_032453	NP_115829	Q8NB42	ZN527_HUMAN	zinc finger protein 527	308	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CAATGACTGTGGAAAAGCCTT	0.393													62	54					0	0	0.00361006	0	0
CATSPERG	57828	broad.mit.edu	37	19	38845361	38845361	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:38845361C>T	uc002oih.3	+	9	1096	c.1009C>T	c.(1009-1011)CGT>TGT	p.R337C	CATSPERG_uc002oig.3_Missense_Mutation_p.R337C|CATSPERG_uc002oif.3_5'UTR|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	337	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						CAGTTGGATTCGTGTCCTGGC	0.567													26	87					0	0	0.000720815	0	0
RYR1	6261	broad.mit.edu	37	19	38959949	38959949	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:38959949C>T	uc002oit.2	+	27	3691	c.3561C>T	c.(3559-3561)TTC>TTT	p.F1187F	RYR1_uc002oiu.2_Silent_p.F1187F	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1187	6 X approximate repeats.|Cytoplasmic.|B30.2/SPRY 2.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	cACCAGGCTTCCTGCCCGTCT	0.338													40	52					0	0	0.00148497	0	0
RYR1	6261	broad.mit.edu	37	19	38960045	38960045	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:38960045G>A	uc002oit.2	+	27	3787	c.3657G>A	c.(3655-3657)CAG>CAA	p.Q1219Q	RYR1_uc002oiu.2_Silent_p.Q1219Q	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1219	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GTGGCCTCCAGGAAGGCTTCG	0.607													29	142					0	0	0.0024448	0	0
RYR1	6261	broad.mit.edu	37	19	39062679	39062679	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:39062679G>A	uc002oit.2	+	95	13897	c.13767G>A	c.(13765-13767)GGG>GGA	p.G4589G	RYR1_uc002oiu.2_Silent_p.G4584G	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	4589					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CTCCACCAGGGGAGGACGACA	0.607													24	79					0	0	0.00127121	0	0
SUPT5H	6829	broad.mit.edu	37	19	39957154	39957154	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:39957154C>T	uc002olo.3	+	12	1090	c.911C>T	c.(910-912)TCC>TTC	p.S304F	SUPT5H_uc002olp.3_Missense_Mutation_p.S304F|SUPT5H_uc002olq.3_Missense_Mutation_p.S300F|SUPT5H_uc002oln.3_Missense_Mutation_p.S304F|SUPT5H_uc002olr.3_Missense_Mutation_p.S304F|SUPT5H_uc002ols.1_5'Flank	NM_001111020	NP_001104490	O00267	SPT5H_HUMAN	suppressor of Ty 5 homolog isoform a	304	KOW 1.				cell cycle|chromatin remodeling|mRNA capping|negative regulation of transcription elongation, DNA-dependent|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription elongation from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|response to organic substance|retroviral genome replication|transcription elongation from RNA polymerase II promoter	nucleoplasm	enzyme binding|protein heterodimerization activity			ovary(3)|pancreas(1)	4	all_cancers(60;6.69e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;1.57e-06)|Ovarian(47;0.159)		Epithelial(26;3.9e-26)|all cancers(26;1.35e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			AACACCATCTCCCTGAAGATG	0.617													26	46					0	0	0.000878237	0	0
SUPT5H	6829	broad.mit.edu	37	19	39959788	39959788	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:39959788C>T	uc002olo.3	+	15	1392	c.1213C>T	c.(1213-1215)CTG>TTG	p.L405L	SUPT5H_uc002olp.3_Silent_p.L405L|SUPT5H_uc002olq.3_Silent_p.L401L|SUPT5H_uc002oln.3_Silent_p.L405L|SUPT5H_uc002olr.3_Silent_p.L405L|SUPT5H_uc002ols.1_Silent_p.L28L|SUPT5H_uc010egp.1_5'Flank	NM_001111020	NP_001104490	O00267	SPT5H_HUMAN	suppressor of Ty 5 homolog isoform a	405	Interaction with RNA polymerase II.				cell cycle|chromatin remodeling|mRNA capping|negative regulation of transcription elongation, DNA-dependent|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription elongation from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|response to organic substance|retroviral genome replication|transcription elongation from RNA polymerase II promoter	nucleoplasm	enzyme binding|protein heterodimerization activity			ovary(3)|pancreas(1)	4	all_cancers(60;6.69e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;1.57e-06)|Ovarian(47;0.159)		Epithelial(26;3.9e-26)|all cancers(26;1.35e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			GGGCATTGACCTGGAGGTGGT	0.597													17	68					0	0	0.00400662	0	0
PRX	57716	broad.mit.edu	37	19	40900623	40900623	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:40900623C>T	uc002onr.2	-	7	3905	c.3636G>A	c.(3634-3636)AAG>AAA	p.K1212K	PRX_uc002onq.2_Silent_p.K1073K|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	1212	Glu-rich (acidic).				axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CGGTGGGCATCTTAAAGACAC	0.662													22	63					0	0	0.00278032	0	0
PRX	57716	broad.mit.edu	37	19	40903778	40903778	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:40903778G>A	uc002onr.2	-	7	750	c.481C>T	c.(481-483)CCC>TCC	p.P161S	PRX_uc002onq.2_Missense_Mutation_p.P22S|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	161	Arg/Lys-rich (basic).|Nuclear localization signal (By similarity).				axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GAGAACTTGGGAAAGGAGAAC	0.667													12	13					0	0	0.000978159	0	0
SPTBN4	57731	broad.mit.edu	37	19	41063071	41063071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:41063071G>A	uc002ony.2	+	26	5518	c.5432G>A	c.(5431-5433)GGA>GAA	p.G1811E	SPTBN4_uc002onx.2_Missense_Mutation_p.G1811E|SPTBN4_uc002onz.2_Missense_Mutation_p.G1811E|SPTBN4_uc010egx.2_Missense_Mutation_p.G554E|SPTBN4_uc002ooa.2_Missense_Mutation_p.G487E	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	1811	Spectrin 15.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			TGGAAGGACGGACTGAACGAG	0.637													25	35					0	0	0.00106085	0	0
ADCK4	79934	broad.mit.edu	37	19	41208507	41208507	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:41208507G>A	uc002oor.2	-	10	1193	c.891C>T	c.(889-891)TTC>TTT	p.F297F	ADCK4_uc002oop.1_5'Flank|ADCK4_uc002ooq.1_Silent_p.F256F	NM_024876	NP_079152	Q96D53	ADCK4_HUMAN	aarF domain containing kinase 4 isoform a	297	Protein kinase.					integral to membrane	protein serine/threonine kinase activity				0			Lung(22;9.49e-05)|LUSC - Lung squamous cell carcinoma(20;0.000219)			CAGCTCACCTGAAATTCTGGG	0.642													24	83					0	0	0.000878237	0	0
CYP2B7P1	1556	broad.mit.edu	37	19	41442133	41442133	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:41442133C>T	uc010ehg.1	+	2	311	c.303C>T	c.(301-303)ATC>ATT	p.I101I	CYP2A7_uc002opo.2_Intron|CYP2B7P1_uc010ehh.1_Silent_p.I101I|CYP2B7P1_uc002opq.2_RNA					SubName: Full=Cytochrome P450 2B7 short isoform; SubName: Full=CYP2B protein;											ovary(1)|skin(1)	2						GGGGAAAAATCGTCATCATGG	0.612													19	19					0	0	0.00229938	0	0
CYP2B6	1555	broad.mit.edu	37	19	41515295	41515295	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:41515295G>A	uc002opr.1	+	5	824	c.817G>A	c.(817-819)GAA>AAA	p.E273K	CYP2A7_uc002opo.2_Intron|CYP2B6_uc010xvu.1_Intron	NM_000767	NP_000758	P20813	CP2B6_HUMAN	cytochrome P450, family 2, subfamily B,	273					cellular ketone metabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(20;0.00322)		Bupropion(DB01156)|Butalbital(DB00241)|Carbamazepine(DB00564)|Clopidogrel(DB00758)|Cyclophosphamide(DB00531)|Efavirenz(DB00625)|Ifosfamide(DB01181)|Memantine(DB01043)|Meperidine(DB00454)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Midazolam(DB00683)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicotine(DB00184)|Orphenadrine(DB01173)|Phenytoin(DB00252)|Propofol(DB00818)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Ticlopidine(DB00208)|Troleandomycin(DB01361)	GCTCCACATGGAAAAAGTGGG	0.353													20	93					0	0	0.00188189	0	0
CYP2A13	1553	broad.mit.edu	37	19	41600253	41600253	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:41600253C>T	uc002opt.2	+	7	1086	c.1077C>T	c.(1075-1077)ATC>ATT	p.I359I		NM_000766	NP_000757	Q16696	CP2AD_HUMAN	cytochrome P450, family 2, subfamily A,	359					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|heme binding			ovary(2)|skin(1)	3					Clomipramine(DB01242)|Nicotine(DB00184)	TCCACGAGATCCAAAGATTTG	0.552													21	61					0	0	0.00229938	0	0
CEACAM7	1087	broad.mit.edu	37	19	42187742	42187742	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:42187742C>T	uc002ori.1	-	3	682	c.680G>A	c.(679-681)AGT>AAT	p.S227N	CEACAM7_uc010ehx.2_Missense_Mutation_p.S227N|CEACAM7_uc010ehy.1_Intron	NM_006890	NP_008821	Q14002	CEAM7_HUMAN	carcinoembryonic antigen-related cell adhesion	227	Ig-like C2-type.					anchored to membrane|integral to membrane|plasma membrane				ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.0027)|all cancers(3;0.00979)|Epithelial(262;0.0366)		GACTGGGTCACTGCGGCTGGC	0.542													40	131					0	0	0.0025221	0	0
CEACAM5	1048	broad.mit.edu	37	19	42223929	42223929	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:42223929C>T	uc002ork.2	+	7	1694	c.1573C>T	c.(1573-1575)CCT>TCT	p.P525S	CEACAM5_uc002orj.1_Missense_Mutation_p.P524S|CEACAM5_uc002orl.2_Missense_Mutation_p.P525S	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	525	Ig-like 6.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		CACCTGTGAACCTGAGGCTCA	0.567													67	85					0	0	0.00361006	0	0
CEACAM6	4680	broad.mit.edu	37	19	42259569	42259569	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:42259569C>T	uc002orm.2	+	1	172	c.23C>T	c.(22-24)CCC>CTC	p.P8L		NM_002483	NP_002474	P40199	CEAM6_HUMAN	carcinoembryonic antigen-related cell adhesion	8					cell-cell signaling|signal transduction	anchored to membrane|integral to plasma membrane				ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(3;0.00575)|all cancers(3;0.0352)|Epithelial(262;0.0797)		TCAGCCCCTCCCTGCAGATTG	0.607													22	61					0	0	0.00332997	0	0
DMRTC2	63946	broad.mit.edu	37	19	42353036	42353036	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:42353036C>T	uc002ors.2	+	5	704	c.621C>T	c.(619-621)CCC>CCT	p.P207P	DMRTC2_uc002orr.1_Silent_p.P84P|DMRTC2_uc010xwe.1_Silent_p.P207P	NM_001040283	NP_001035373	Q8IXT2	DMRTD_HUMAN	DMRT-like family C2	207	Pro-rich.				cell differentiation|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity				0						CTCTGCCTCCCTTCCCTGGTA	0.393													51	64					0	0	0.00361006	0	0
GRIK5	2901	broad.mit.edu	37	19	42507715	42507715	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:42507715C>T	uc002osj.1	-	17	2419	c.2384G>A	c.(2383-2385)CGA>CAA	p.R795Q	GRIK5_uc002osi.1_Missense_Mutation_p.R367Q	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor	795	Extracellular (Potential).					cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	ACCTTTAGCTCGATGGTCCTC	0.632													12	42					0	0	0.00244969	0	0
CIC	23152	broad.mit.edu	37	19	42794425	42794425	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:42794425C>T	uc002otf.1	+	10	1545	c.1505C>T	c.(1504-1506)TCC>TTC	p.S502F		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	502					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				ATCCGTTCCTCCTTTACCCAC	0.617			T	DUX4	soft tissue sarcoma								24	71					0	0	0.00278032	0	0
MEGF8	1954	broad.mit.edu	37	19	42863316	42863316	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:42863316T>A	uc002otl.3	+	30	5844	c.5209T>A	c.(5209-5211)TCG>ACG	p.S1737T	MEGF8_uc002otm.3_Missense_Mutation_p.S1345T	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	1804	Extracellular (Potential).|Kelch 11.					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				TGGGGGGCGCTCGGACCCTGA	0.652													6	7					0	0	0.00307968	0	0
PSG7	5676	broad.mit.edu	37	19	43439693	43439693	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:43439693C>T	uc002ovl.3	-	2	393	c.291_splice	c.e2+1	p.G97_splice	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Intron	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7						female pregnancy	extracellular region					0		Prostate(69;0.00682)				TACTGTTTCTCATCCACTGTA	0.418													144	188					0	0	0.00361006	0	0
PSG5	5673	broad.mit.edu	37	19	43679400	43679400	+	Missense_Mutation	SNP	C	T	T	rs138033994		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:43679400C>T	uc002ovu.2	-	4	1062	c.931G>A	c.(931-933)GAA>AAA	p.E311K	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Missense_Mutation_p.E186K|PSG5_uc002ovx.2_Missense_Mutation_p.E311K|PSG5_uc002ovv.2_Missense_Mutation_p.E404K|PSG5_uc002ovw.2_Intron	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	311	Ig-like C2-type 2.				female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				TTGGAGCTTTCCTTGCCAGTA	0.463													171	150					0	0	0.00361006	0	0
ZNF222	7673	broad.mit.edu	37	19	44536305	44536305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:44536305C>T	uc002oyc.2	+	4	661	c.478C>T	c.(478-480)CTT>TTT	p.L160F	ZNF284_uc010ejd.2_Intron|ZNF222_uc002oye.2_Missense_Mutation_p.L200F|ZNF222_uc002oyd.2_Missense_Mutation_p.L106F	NM_013360	NP_037492	Q9UK12	ZN222_HUMAN	zinc finger protein 222 isoform 2	160	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Prostate(69;0.0435)				CATCTCAGCCCTTCATATTCA	0.423													88	77					0	0	0.00361006	0	0
ZNF229	7772	broad.mit.edu	37	19	44933669	44933669	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:44933669C>T	uc002oze.1	-	6	1721	c.1287G>A	c.(1285-1287)GGG>GGA	p.G429G	ZNF229_uc010ejk.1_Silent_p.G83G|ZNF229_uc010ejl.1_Silent_p.G423G	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	429					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				AGGGCTTCTCCCCTGTGTGCA	0.537													9	35					0	0	0.000274275	0	0
ZNF229	7772	broad.mit.edu	37	19	44933871	44933871	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:44933871G>A	uc002oze.1	-	6	1519	c.1085C>T	c.(1084-1086)TCG>TTG	p.S362L	ZNF229_uc010ejk.1_Missense_Mutation_p.S16L|ZNF229_uc010ejl.1_Missense_Mutation_p.S356L	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	362	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				AAGAAGAACCGATTTATACCT	0.498													31	90					0	0	0.00209593	0	0
CBLC	23624	broad.mit.edu	37	19	45281499	45281500	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:45281499_45281500GG>AT	uc002ozs.2	+	1	374_375	c.311_312GG>AT	c.(310-312)AGG>AAT	p.R104N	CBLC_uc010ejt.2_Missense_Mutation_p.R104N	NM_012116	NP_036248	Q9ULV8	CBLC_HUMAN	Cas-Br-M (murine) ecotropic retroviral	104	4H.|Cbl-PTB.				cell surface receptor linked signaling pathway|negative regulation of epidermal growth factor receptor activity|negative regulation of MAP kinase activity|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	calcium ion binding|epidermal growth factor receptor binding|phosphotyrosine binding|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|skin(1)	6	Lung NSC(12;0.00136)|all_lung(12;0.00371)	Ovarian(192;0.231)				CGGGGCCGAAGGAGTGCCAACG	0.525			M		AML								63	119					0	0	6.4e-05	0	0
BCAM	4059	broad.mit.edu	37	19	45321855	45321855	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:45321855C>T	uc002ozu.2	+	9	1199	c.1155C>T	c.(1153-1155)TCC>TCT	p.S385S	BCAM_uc002ozt.1_Silent_p.S385S	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	385	Extracellular (Potential).|Ig-like C2-type 2.				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				TGAACTGCTCCGTGCACGGCC	0.647													42	51					0	0	0.00222228	0	0
CCDC8	83987	broad.mit.edu	37	19	46915887	46915887	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:46915887T>C	uc002pep.2	-	1	1033	c.181A>G	c.(181-183)AAG>GAG	p.K61E		NM_032040	NP_114429	Q9H0W5	CCDC8_HUMAN	coiled-coil domain containing 8	61						plasma membrane				ovary(3)	3				OV - Ovarian serous cystadenocarcinoma(262;4.66e-05)|all cancers(93;0.000582)|Epithelial(262;0.00428)|GBM - Glioblastoma multiforme(486;0.0421)		ggggtgctcttctccatgatg	0.308													17	55					0	0	0.00121646	0	0
C5AR1	728	broad.mit.edu	37	19	47823499	47823499	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:47823499C>T	uc002pgj.1	+	2	514	c.465C>T	c.(463-465)ATC>ATT	p.I155I		NM_001736	NP_001727	P21730	C5AR_HUMAN	complement component 5 receptor 1	155	Helical; Name=4; (Potential).				activation of MAPK activity|activation of phospholipase C activity|cellular defense response|elevation of cytosolic calcium ion concentration|immune response|sensory perception of chemical stimulus	integral to plasma membrane	C5a anaphylatoxin receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_cancers(25;2e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;0.000267)|OV - Ovarian serous cystadenocarcinoma(262;0.000618)|Epithelial(262;0.0142)|GBM - Glioblastoma multiforme(486;0.0242)		TGGCCTGGATCGCCTGTGCCG	0.607													25	115					0	0	0.001512	0	0
MEIS3	56917	broad.mit.edu	37	19	47920552	47920552	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:47920552C>T	uc002pgu.2	-	2	515	c.68G>A	c.(67-69)AGC>AAC	p.S23N	MEIS3_uc002pgp.2_5'Flank|MEIS3_uc002pgq.2_Missense_Mutation_p.S104N|MEIS3_uc002pgr.2_5'UTR|MEIS3_uc002pgt.2_Missense_Mutation_p.S23N|MEIS3_uc002pgv.2_Missense_Mutation_p.S23N|MEIS3_uc002pgs.2_Missense_Mutation_p.S23N|MEIS3_uc010eld.2_Missense_Mutation_p.S23N|MEIS3_uc002pgw.2_Missense_Mutation_p.A136T	NM_001009813	NP_001009813	Q99687	MEIS3_HUMAN	Meis1, myeloid ecotropic viral integration site	23						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;0.000198)|OV - Ovarian serous cystadenocarcinoma(262;0.000439)|Epithelial(262;0.0113)|GBM - Glioblastoma multiforme(486;0.0223)		CTCTGGGAAGCTAGCCAGGGC	0.687													15	75					0	0	0.000566183	0	0
TPRX1	284355	broad.mit.edu	37	19	48305217	48305217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:48305217G>A	uc002php.1	-	2	1122	c.1051C>T	c.(1051-1053)CCT>TCT	p.P351S		NM_198479	NP_940881	Q8N7U7	TPRX1_HUMAN	tetra-peptide repeat homeobox	351						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(25;3.02e-09)|all_epithelial(76;7e-07)|all_lung(116;2.48e-06)|Lung NSC(112;5.15e-06)|Ovarian(192;0.0139)|all_neural(266;0.0146)|Breast(70;0.133)		OV - Ovarian serous cystadenocarcinoma(262;0.000241)|all cancers(93;0.00036)|Epithelial(262;0.0127)|GBM - Glioblastoma multiforme(486;0.048)		GTGAAGTGAGGGAATAACTGG	0.433													41	62					0	0	0.0025221	0	0
SULT2A1	6822	broad.mit.edu	37	19	48386958	48386958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:48386958C>T	uc002phr.2	-	2	361	c.221G>A	c.(220-222)CGA>CAA	p.R74Q		NM_003167	NP_003158	Q06520	ST2A1_HUMAN	bile-salt sulfotransferase 2A1	74					3'-phosphoadenosine 5'-phosphosulfate metabolic process|bile acid catabolic process|cellular lipid metabolic process|digestion|sulfation|xenobiotic metabolic process	cytosol	bile-salt sulfotransferase activity			ovary(1)|pancreas(1)	2		all_cancers(25;3.02e-09)|all_lung(116;6.48e-07)|all_epithelial(76;7.35e-07)|Lung NSC(112;1.56e-06)|all_neural(266;0.0146)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000254)|all cancers(93;0.000545)|Epithelial(262;0.0217)|GBM - Glioblastoma multiforme(486;0.0552)		CCAGGGTGATCGCTCCCAGAT	0.517													11	50					0	0	0.000978159	0	0
GRWD1	83743	broad.mit.edu	37	19	48955988	48955988	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:48955988C>T	uc002pjd.2	+	7	1280	c.1047C>T	c.(1045-1047)TTC>TTT	p.F349F	KCNJ14_uc002pje.1_5'Flank	NM_031485	NP_113673	Q9BQ67	GRWD1_HUMAN	glutamate-rich WD repeat containing 1	349						nucleolus				ovary(1)	1		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000206)|all cancers(93;0.000207)|Epithelial(262;0.0125)|GBM - Glioblastoma multiforme(486;0.0222)		TGGCCACCTTCAAGCAGCACG	0.647													32	37					0	0	0.00128727	0	0
IZUMO1	284359	broad.mit.edu	37	19	49244246	49244246	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:49244246G>A	uc002pkj.2	-	10	1520	c.972C>T	c.(970-972)TCC>TCT	p.S324S	RASIP1_uc002pki.2_5'Flank|IZUMO1_uc010eme.2_RNA|IZUMO1_uc010emf.2_RNA	NM_182575	NP_872381	Q8IYV9	IZUM1_HUMAN	izumo sperm-egg fusion 1 precursor	324	Cytoplasmic (Potential).				fusion of sperm to egg plasma membrane	integral to membrane				ovary(1)	1		all_lung(116;0.000156)|Lung NSC(112;0.000251)|all_epithelial(76;0.000761)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		CAAACAGTGAGGATTTGATGA	0.493													14	73					0	0	0.00400662	0	0
PLEKHA4	57664	broad.mit.edu	37	19	49362808	49362808	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:49362808G>A	uc002pkx.2	-	7	1161	c.610C>T	c.(610-612)CGT>TGT	p.R204C	PLEKHA4_uc002pkw.1_5'Flank|PLEKHA4_uc010eml.2_Missense_Mutation_p.R204C	NM_020904	NP_065955	Q9H4M7	PKHA4_HUMAN	pleckstrin homology domain containing family A	204	Pro-rich.					cytoplasm|membrane	1-phosphatidylinositol binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;0.000108)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00027)|all cancers(93;0.00084)|GBM - Glioblastoma multiforme(486;0.0244)|Epithelial(262;0.0364)		GGTCTACCACGACCTCTGGAG	0.677													33	33					0	0	0.000953801	0	0
PLEKHA4	57664	broad.mit.edu	37	19	49368804	49368804	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:49368804C>T	uc002pkx.2	-	3	699	c.148G>A	c.(148-150)GAT>AAT	p.D50N	PLEKHA4_uc010eml.2_Missense_Mutation_p.D50N	NM_020904	NP_065955	Q9H4M7	PKHA4_HUMAN	pleckstrin homology domain containing family A	50						cytoplasm|membrane	1-phosphatidylinositol binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;0.000108)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00027)|all cancers(93;0.00084)|GBM - Glioblastoma multiforme(486;0.0244)|Epithelial(262;0.0364)		AGGTTGGGATCCCTCCTGAGC	0.577													21	30					0	0	0.000720815	0	0
NUCB1	4924	broad.mit.edu	37	19	49416799	49416799	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:49416799C>T	uc002plb.3	+	7	807	c.735C>T	c.(733-735)CCC>CCT	p.P245P	NUCB1_uc002pla.2_Silent_p.P245P|NUCB1_uc002plc.2_Silent_p.P245P	NM_006184	NP_006175	Q02818	NUCB1_HUMAN	nucleobindin 1 precursor	245	Binds to GNAI2 and GNAI3 (By similarity).|EF-hand 1.					ER-Golgi intermediate compartment|extracellular space|Golgi apparatus|membrane|microtubule cytoskeleton	calcium ion binding|DNA binding				0		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;8.64e-05)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000171)|all cancers(93;0.000333)|Epithelial(262;0.0174)|GBM - Glioblastoma multiforme(486;0.0244)		GGTTTAACCCCAAGACCTTCT	0.562													35	33					0	0	0.000953801	0	0
BAX	581	broad.mit.edu	37	19	49459483	49459484	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:49459483_49459484CC>TT	uc002plk.2	+	4	331_332	c.262_263CC>TT	c.(262-264)CCC>TTC	p.P88F	BAX_uc002plf.1_Missense_Mutation_p.P88F|BAX_uc002plg.1_Missense_Mutation_p.P51F|BAX_uc002plh.1_Missense_Mutation_p.P10F|BAX_uc010xzx.1_RNA|BAX_uc002plj.2_Missense_Mutation_p.P88F|BAX_uc002pll.2_Missense_Mutation_p.P39F|BAX_uc002plm.2_Missense_Mutation_p.P10F	NM_138761	NP_620116	Q07812	BAX_HUMAN	BCL2-associated X protein isoform alpha	88					activation of caspase activity by cytochrome c|activation of pro-apoptotic gene products|B cell apoptosis|cleavage of lamin|DNA fragmentation involved in apoptotic nuclear change|establishment or maintenance of transmembrane electrochemical gradient|induction of apoptosis by extracellular signals|induction of apoptosis by intracellular signals|induction of retinal programmed cell death|mitochondrial fragmentation involved in apoptosis|mitochondrial fusion|negative regulation of protein binding|negative regulation of survival gene product expression|nuclear fragmentation involved in apoptotic nuclear change|positive regulation of neuron apoptosis|protein homooligomerization|regulation of mitochondrial membrane potential|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|release of cytochrome c from mitochondria|release of matrix enzymes from mitochondria|response to toxin|transformed cell apoptosis	cytosol|endoplasmic reticulum membrane|mitochondrial outer membrane|mitochondrial permeability transition pore complex|nucleus	BH3 domain binding|channel activity|lipid binding|protein heterodimerization activity|protein homodimerization activity			lung(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000159)|all cancers(93;0.00047)|GBM - Glioblastoma multiforme(486;0.018)|Epithelial(262;0.0279)		CACAGACTCCCCCCGAGAGGTC	0.579													22	95					0	0	6.4e-05	0	0
CGB	1082	broad.mit.edu	37	19	49527216	49527216	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:49527216G>A	uc002plv.1	-	1	378	c.13C>T	c.(13-15)CAG>TAG	p.Q5*	CGB_uc010yad.1_Intron|CGB_uc002plu.1_5'Flank	NM_000737	NP_000728	P01233	CGHB_HUMAN	chorionic gonadotropin beta 3 subunit precursor	5					apoptosis|cell-cell signaling|cellular nitrogen compound metabolic process|female gamete generation|hormone biosynthetic process|peptide hormone processing|signal transduction	extracellular region|soluble fraction	hormone activity				0		all_epithelial(76;9.62e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;0.000371)|OV - Ovarian serous cystadenocarcinoma(262;0.000503)|GBM - Glioblastoma multiforme(486;0.00518)|Epithelial(262;0.0427)	Choriogonadotropin alfa(DB00097)	AGTCTTACCTGGAACATCTCC	0.607													25	90					0	0	0.00361006	0	0
LRRC4B	94030	broad.mit.edu	37	19	51021937	51021937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:51021937C>T	uc002pss.2	-	3	1170	c.1033G>A	c.(1033-1035)GGC>AGC	p.G345S		NM_001080457	NP_001073926	Q9NT99	LRC4B_HUMAN	leucine rich repeat containing 4B precursor	345	LRRCT.|Extracellular (Potential).					cell junction|integral to membrane|presynaptic membrane				central_nervous_system(1)|skin(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00284)|GBM - Glioblastoma multiforme(134;0.0188)		CCCTTGAGGCCGGCGGGCGCA	0.667													7	38					0	0	0.00307968	0	0
SHANK1	50944	broad.mit.edu	37	19	51165595	51165595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:51165595G>A	uc002psx.1	-	23	6132	c.6113C>T	c.(6112-6114)TCC>TTC	p.S2038F	SHANK1_uc002psw.1_Missense_Mutation_p.S1422F	NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	2038					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		TCCAGTTGGGGAGCCACGGAT	0.701													5	15					0	0	0.00198382	0	0
SHANK1	50944	broad.mit.edu	37	19	51217121	51217121	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:51217121G>A	uc002psx.1	-	5	745	c.726C>T	c.(724-726)TTC>TTT	p.F242F		NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	242	ANK 1.				cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		CCCGGGCCCGGAAGTCAATGT	0.667													13	44					0	0	0.00136819	0	0
SHANK1	50944	broad.mit.edu	37	19	51219543	51219543	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:51219543G>A	uc002psx.1	-	2	467	c.448C>T	c.(448-450)CCC>TCC	p.P150S		NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	150					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		TCCAGGTAGGGGACCCCCTTC	0.582													20	74					0	0	0.000958276	0	0
KLK10	5655	broad.mit.edu	37	19	51518107	51518107	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:51518107G>A	uc002puy.2	-	6	861	c.780C>T	c.(778-780)ACC>ACT	p.T260T	KLK10_uc002puz.2_Silent_p.T260T|KLK10_uc002pva.2_Silent_p.T260T	NM_145888	NP_665895	O43240	KLK10_HUMAN	kallikrein-related peptidase 10 preproprotein	260	Peptidase S1.				cell cycle|proteolysis	extracellular region	serine-type endopeptidase activity			lung(2)	2		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00885)		TGCAGATCTGGGTGTAGACAG	0.547													23	87					0	0	0.00229938	0	0
SIGLEC9	27180	broad.mit.edu	37	19	51629048	51629048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:51629048G>A	uc002pvu.2	+	2	683	c.616G>A	c.(616-618)GAC>AAC	p.D206N	SIGLEC9_uc010yct.1_Missense_Mutation_p.D206N	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	206	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		ACAGCCCCAGGACCATGGCAC	0.657													46	32					0	0	0.00285205	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51650079	51650079	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:51650079T>C	uc002pvv.1	+	5	1165	c.1096T>C	c.(1096-1098)TTC>CTC	p.F366L	SIGLEC7_uc002pvw.1_Missense_Mutation_p.F273L|SIGLEC7_uc010eoq.1_Intron|SIGLEC7_uc010eor.1_Intron	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	366	Helical; (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		AGCCCTGGTCTTCCTCTCCTT	0.587													50	63					0	0	0.00361006	0	0
LIM2	3982	broad.mit.edu	37	19	51885677	51885677	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:51885677G>A	uc002pwm.2	-	3	364	c.320C>T	c.(319-321)TCC>TTC	p.S107F	LIM2_uc002pwl.2_Missense_Mutation_p.S149F	NM_001161748	NP_001155220	P55344	LMIP_HUMAN	lens intrinsic membrane protein 2, 19kDa isoform	107	Helical; (Potential).				cell-cell junction assembly	cell junction|integral to membrane	structural constituent of eye lens				0		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000214)|OV - Ovarian serous cystadenocarcinoma(262;0.00985)		CTCACTTGAGGAAAAAAACAT	0.313													44	46					0	0	0.00361006	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51961290	51961290	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:51961290C>T	uc002pwt.2	-	1	419	c.352G>A	c.(352-354)GAT>AAT	p.D118N	SIGLEC8_uc010yda.1_Missense_Mutation_p.D118N|SIGLEC8_uc002pwu.2_RNA|SIGLEC8_uc010eox.2_Missense_Mutation_p.D118N	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	118	Ig-like V-type.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		GACCCCTTATCCCTCTTCCTG	0.488													78	89					0	0	0.00361006	0	0
CEACAM18	729767	broad.mit.edu	37	19	51986310	51986310	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:51986310A>C	uc002pwv.1	+	5	896	c.896A>C	c.(895-897)GAT>GCT	p.D299A		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	299	Ig-like C2-type.					integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		AATCCTGATGATTTCAACGGC	0.537													46	168					0	0	0.00361006	0	0
SIGLEC6	946	broad.mit.edu	37	19	52033225	52033225	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:52033225G>A	uc002pwy.2	-	5	927	c.765C>T	c.(763-765)ATC>ATT	p.I255I	SIGLEC6_uc002pwz.2_Silent_p.I239I|SIGLEC6_uc002pxa.2_Silent_p.I255I|SIGLEC6_uc010ydb.1_Silent_p.I192I|SIGLEC6_uc010ydc.1_Silent_p.I255I|SIGLEC6_uc010eoz.1_Silent_p.I233I|SIGLEC6_uc010epb.1_Silent_p.I208I|SIGLEC6_uc010epa.1_Silent_p.I244I	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	255	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		TGTTTTGCAGGATTTTGAAGG	0.592													22	102					0	0	0.00332997	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52115563	52115563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:52115563G>A	uc002pxe.2	-	9	1716	c.1577C>T	c.(1576-1578)TCT>TTT	p.S526F		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	526	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		CTTCATCTCAGAAAAACTAAG	0.552													36	106					0	0	0.000953801	0	0
ZNF28	7576	broad.mit.edu	37	19	53303922	53303922	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:53303922G>A	uc002qad.2	-	4	1296	c.1176C>T	c.(1174-1176)TTC>TTT	p.F392F	ZNF28_uc002qac.2_Silent_p.F339F|ZNF28_uc010eqe.2_Silent_p.F338F	NM_006969	NP_008900	P17035	ZNF28_HUMAN	zinc finger protein 28	392	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(134;0.0386)|Lung(386;0.145)		ATTTGCGACTGAAAACTTTTT	0.383													52	75					0	0	0.00361006	0	0
ZNF28	7576	broad.mit.edu	37	19	53311333	53311333	+	Silent	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:53311333T>C	uc002qad.2	-	3	189	c.69A>G	c.(67-69)AAA>AAG	p.K23K	ZNF28_uc002qac.2_5'UTR|ZNF28_uc010eqe.2_Intron	NM_006969	NP_008900	P17035	ZNF28_HUMAN	zinc finger protein 28	23	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(134;0.0386)|Lung(386;0.145)		GGTCCAGGCATTTCCACTCCT	0.483													5	148					0	0	0.000673444	0	0
ZNF415	55786	broad.mit.edu	37	19	53611784	53611784	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:53611784A>C	uc002qax.2	-	7	2007	c.1658T>G	c.(1657-1659)TTT>TGT	p.F553C	ZNF415_uc002qat.2_Missense_Mutation_p.F517C|ZNF415_uc002qaw.2_Missense_Mutation_p.F505C|ZNF415_uc010yds.1_Missense_Mutation_p.F505C|ZNF415_uc010ydt.1_Missense_Mutation_p.F505C|ZNF415_uc002qau.2_Missense_Mutation_p.F492C|ZNF415_uc002qav.2_Missense_Mutation_p.F517C|ZNF415_uc002qba.2_Missense_Mutation_p.F275C|ZNF415_uc002qay.2_Missense_Mutation_p.F492C|ZNF415_uc002qaz.2_Missense_Mutation_p.F553C	NR_028343		Q09FC8	ZN415_HUMAN	RecName: Full=Zinc finger protein 415;	553	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton|nucleolus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.0191)		GCGCACACTAAAGGATTTGCC	0.433													31	138					0	0	0.00209593	0	0
ZNF665	79788	broad.mit.edu	37	19	53668809	53668809	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:53668809G>A	uc010eqm.1	-	4	1034	c.934C>T	c.(934-936)CAT>TAT	p.H312Y		NM_024733	NP_079009	Q9H7R5	ZN665_HUMAN	zinc finger protein 665	247	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0196)		TCCCCAGTATGAATTCTTCGA	0.433													42	167					0	0	0.00361006	0	0
VN1R4	317703	broad.mit.edu	37	19	53770738	53770738	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:53770738C>T	uc010ydu.1	-	1	181	c.181G>A	c.(181-183)GGA>AGA	p.G61R		NM_173857	NP_776256	Q7Z5H5	VN1R4_HUMAN	vomeronasal 1 receptor 4	61	Helical; Name=2; (Potential).				response to pheromone	actin cytoskeleton|cytoplasm|integral to membrane|plasma membrane	pheromone receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.00294)		TGGGGGACTCCTTTACAGCGG	0.463										HNSCC(26;0.072)			26	21					0	0	0.00327116	0	0
DPRX	503834	broad.mit.edu	37	19	54140070	54140070	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:54140070C>T	uc002qcf.1	+	3	455	c.404C>T	c.(403-405)CCC>CTC	p.P135L		NM_001012728	NP_001012746	A6NFQ7	DPRX_HUMAN	divergent-paired related homeobox	135						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.013)		ATCCTGTACCCCAACCTCAAG	0.517													29	102					0	0	0.00178596	0	0
MIR520G	574484	broad.mit.edu	37	19	54225474	54225474	+	RNA	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:54225474A>C	hsa-mir-520g|MI0003166	+			c.55A>C																				0						CTGAGAAAAAACAAAGTGCTT	0.408													18	51					0	0	0.000958276	0	0
MIR527	574497	broad.mit.edu	37	19	54257317	54257317	+	RNA	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:54257317G>A	hsa-mir-527|MI0003179	+			c.46G>A			MIR516A1_hsa-mir-516a-1|MI0003180_5'Flank																	0						TTGTCTAAAAGAAAAGAAAGT	0.428													81	102					0	0	0.00361006	0	0
MIR1283-2	100302205	broad.mit.edu	37	19	54261508	54261508	+	RNA	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:54261508G>A	hsa-mir-1283-2|MI0006430	+			c.23G>A																				0						GTCTACAAAGGAAAGCGCTTT	0.408													31	121					0	0	0.00327116	0	0
NLRP12	91662	broad.mit.edu	37	19	54313058	54313058	+	Missense_Mutation	SNP	C	T	T	rs139082917		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:54313058C>T	uc002qch.3	-	3	2075	c.1855G>A	c.(1855-1857)GAG>AAG	p.E619K	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.E619K|NLRP12_uc002qcj.3_Missense_Mutation_p.E619K|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.E619K	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	619					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		TCCTGGATCTCGTACAAGCAG	0.557													32	89					0	0	0.00327116	0	0
PRKCG	5582	broad.mit.edu	37	19	54403977	54403977	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:54403977G>A	uc002qcq.1	+	14	1831	c.1549G>A	c.(1549-1551)GGG>AGG	p.G517R	PRKCG_uc010yeg.1_Missense_Mutation_p.G517R|PRKCG_uc010yeh.1_Missense_Mutation_p.G404R	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	517	Protein kinase.				activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		CACCTTCTGCGGGACCCCGGA	0.562													62	215					0	0	0.00361006	0	0
CACNG8	59283	broad.mit.edu	37	19	54483246	54483246	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:54483246C>T	uc002qcs.1	+	3	596	c.490C>T	c.(490-492)CTG>TTG	p.L164L	MIR935_hsa-mir-935|MI0005757_5'Flank	NM_031895	NP_114101	Q8WXS5	CCG8_HUMAN	voltage-dependent calcium channel gamma-8	165	Helical; (Potential).				regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic density|postsynaptic membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0	all_cancers(19;0.0385)|all_epithelial(19;0.0207)|all_lung(19;0.145)|Lung NSC(19;0.168)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.162)		CGCAGGGATCCTGTTCGTGGC	0.567													9	21					0	0	0.000978159	0	0
CNOT3	4849	broad.mit.edu	37	19	54649670	54649670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:54649670C>T	uc002qdj.1	+	9	1039	c.728C>T	c.(727-729)CCC>CTC	p.P243L	CNOT3_uc010yel.1_Missense_Mutation_p.P243L|CNOT3_uc002qdi.2_Missense_Mutation_p.P156L|CNOT3_uc002qdk.1_Missense_Mutation_p.P243L|CNOT3_uc010ere.1_RNA	NM_014516	NP_055331	O75175	CNOT3_HUMAN	CCR4-NOT transcription complex, subunit 3	243					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					GCCACCTCCCCTCCCAGCCAC	0.637													14	53					0	0	0.000566183	0	0
LILRB5	10990	broad.mit.edu	37	19	54759232	54759232	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:54759232C>T	uc002qex.2	-	5	980	c.869G>A	c.(868-870)GGG>GAG	p.G290E	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Missense_Mutation_p.G281E|LILRB5_uc002qey.2_Missense_Mutation_p.G290E|LILRB5_uc002qez.2_Missense_Mutation_p.G190E|LILRB5_uc002qfa.1_Missense_Mutation_p.G180E|LILRB5_uc010yes.1_RNA	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	290	Ig-like C2-type 3.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GTACTGGCCCCCGTGGGAGCG	0.682													29	40					0	0	0.00127121	0	0
LILRB2	10288	broad.mit.edu	37	19	54782143	54782143	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:54782143G>A	uc002qfb.2	-	7	1495	c.1229C>T	c.(1228-1230)CCC>CTC	p.P410L	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Missense_Mutation_p.P410L|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Missense_Mutation_p.P410L|LILRB2_uc010yet.1_Missense_Mutation_p.P294L|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	410	Extracellular (Potential).|Ig-like C2-type 4.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GGGCTCACTGGGGTGAGACAG	0.637													21	62					0	0	0.00152264	0	0
LILRB2	10288	broad.mit.edu	37	19	54783445	54783445	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:54783445C>T	uc002qfb.2	-	5	679	c.413G>A	c.(412-414)GGA>GAA	p.G138E	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Missense_Mutation_p.G138E|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Missense_Mutation_p.G138E|LILRB2_uc010yet.1_Missense_Mutation_p.G22E|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	138	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GGTCACCCTTCCTCCTGAGGT	0.582													46	51					0	0	0.00361006	0	0
KIR3DX1	90011	broad.mit.edu	37	19	55045040	55045040	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:55045040C>T	uc010yfa.1	+	3		c.266C>T			KIR3DX1_uc010yfb.1_RNA|KIR3DX1_uc010yfc.1_RNA|KIR3DX1_uc010yfd.1_RNA	NR_026716				Homo sapiens mRNA for FLJ00060 protein, partial cds.											ovary(1)	1				GBM - Glioblastoma multiforme(193;0.099)		TTCCCATCTTCGGTTTGTCAT	0.537													16	42					0	0	0.00074312	0	0
KIR2DS4	3809	broad.mit.edu	37	19	55344234	55344234	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:55344234C>T	uc002qhm.1	+	1	61	c.15C>T	c.(13-15)GTC>GTT	p.V5V	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Silent_p.V5V	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	5						integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		CGCTCATGGTCATCATCATGG	0.617													82	99					0	0	0.00361006	0	0
PTPRH	5794	broad.mit.edu	37	19	55698954	55698954	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:55698954G>A	uc002qjq.2	-	14	2566	c.2493C>T	c.(2491-2493)GGC>GGT	p.G831G	PTPRH_uc010esv.2_Silent_p.G653G|uc002qjr.2_5'Flank	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	831	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		ACTGGCTGTGGCCCACCAGGG	0.587													18	57					0	0	0.00152264	0	0
PTPRH	5794	broad.mit.edu	37	19	55708578	55708578	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:55708578C>T	uc002qjq.2	-	9	1970	c.1897G>A	c.(1897-1899)GAG>AAG	p.E633K	PTPRH_uc010esv.2_Missense_Mutation_p.E455K|PTPRH_uc002qjs.2_Missense_Mutation_p.E640K	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	633	Extracellular (Potential).|Fibronectin type-III 7.				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		TCCAGGGCCTCCACTTTGTAC	0.587													19	63					0	0	0.000958276	0	0
BRSK1	84446	broad.mit.edu	37	19	55816264	55816264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:55816264C>T	uc002qkg.2	+	14	1970	c.1693C>T	c.(1693-1695)CGC>TGC	p.R565C	BRSK1_uc002qkf.2_Missense_Mutation_p.R581C|BRSK1_uc002qkh.2_Missense_Mutation_p.R260C	NM_032430	NP_115806	Q8TDC3	BRSK1_HUMAN	BR serine/threonine kinase 1	565					establishment of cell polarity|G2/M transition DNA damage checkpoint|neuron differentiation|response to UV	cell junction|cytoplasm|nucleus	magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|lung(1)|breast(1)|skin(1)	6		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0474)		GGGCTCCCCTCGCTTTCACCG	0.647													8	41					0	0	0.000442599	0	0
RPL28	6158	broad.mit.edu	37	19	55899332	55899332	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:55899332C>T	uc002qkv.2	+	4	282	c.240C>T	c.(238-240)ACC>ACT	p.T80T	RPL28_uc010yga.1_Silent_p.T80T|RPL28_uc010ygb.1_Silent_p.T80T|RPL28_uc002qkw.1_3'UTR	NM_000991	NP_000982	P46779	RL28_HUMAN	ribosomal protein L28 isoform 2	80					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	protein binding|RNA binding|structural constituent of ribosome				0	Breast(117;0.191)	Renal(1328;0.245)	LUSC - Lung squamous cell carcinoma(43;0.13)|BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0443)		ATGTGCGGACCACCATCAACA	0.612													81	68					0	0	0.00361006	0	0
EPN1	29924	broad.mit.edu	37	19	56203253	56203253	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:56203253C>T	uc002qlw.2	+	7	1238	c.896C>T	c.(895-897)CCC>CTC	p.P299L	EPN1_uc002qlv.2_Missense_Mutation_p.P274L|EPN1_uc010etd.2_Missense_Mutation_p.P299L|EPN1_uc002qlx.2_Missense_Mutation_p.P385L	NM_001130072	NP_001123544	Q9Y6I3	EPN1_HUMAN	epsin 1 isoform b	299	Ala/Gly/Pro-rich.|8 X 3 AA repeats of [ED]-P-W.				endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|cytoplasm|nucleus|plasma membrane	lipid binding				0		Colorectal(82;0.00244)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.112)		TGGGGCGGCCCCCCTGTCCCT	0.756													6	24					0	0	0.00116845	0	0
NLRP11	204801	broad.mit.edu	37	19	56321216	56321216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:56321216G>A	uc010ygf.1	-	5	1471	c.760C>T	c.(760-762)CCC>TCC	p.P254S	NLRP11_uc002qlz.2_Missense_Mutation_p.P155S|NLRP11_uc002qmb.2_Missense_Mutation_p.P155S|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	254	NACHT.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		ACTGGAATGGGAACTTTCTGG	0.448													37	41					0	0	0.000953801	0	0
NLRP4	147945	broad.mit.edu	37	19	56370415	56370415	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:56370415G>A	uc002qmd.3	+	3	2078	c.1656G>A	c.(1654-1656)GCG>GCA	p.A552A	NLRP4_uc002qmf.2_Silent_p.A477A|NLRP4_uc010etf.2_Silent_p.A383A	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	552							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		ATTCCTTGGCGATATTTTACT	0.473													46	36					0	0	0.00222228	0	0
NLRP4	147945	broad.mit.edu	37	19	56382317	56382317	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:56382317C>T	uc002qmd.3	+	7	2901	c.2479C>T	c.(2479-2481)CTC>TTC	p.L827F	NLRP4_uc002qmf.2_Missense_Mutation_p.L752F|NLRP4_uc010etf.2_Missense_Mutation_p.L602F	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	827	LRR 5.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		ACTGAAAACTCTCTGCGAGGC	0.502													27	67					0	0	0.00127121	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733493	56733493	+	Silent	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:56733493T>A	uc002qmq.2	-	5	1108	c.942A>T	c.(940-942)GGA>GGT	p.G314G	ZSCAN5A_uc010ygi.1_Silent_p.G197G|ZSCAN5A_uc002qmr.2_Silent_p.G314G|ZSCAN5A_uc002qms.1_Silent_p.G313G	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	314					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GTGTGGCTTCTCCTTGAGGCT	0.562													40	99					0	0	0.00148497	0	0
ZNF582	147948	broad.mit.edu	37	19	56896082	56896082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:56896082G>A	uc002qmz.1	-	5	863	c.704C>T	c.(703-705)GCC>GTC	p.A235V	ZNF582_uc002qmy.2_Missense_Mutation_p.A266V	NM_144690	NP_653291	Q96NG8	ZN582_HUMAN	zinc finger protein 582	235	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|large_intestine(1)	4		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0547)		AGAATTGAAGGCCTTTCCACA	0.373													18	49					0	0	0.000958276	0	0
ZNF470	388566	broad.mit.edu	37	19	57089701	57089701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:57089701C>T	uc002qnl.3	+	6	2580	c.1904C>T	c.(1903-1905)TCC>TTC	p.S635F	ZNF470_uc010etn.2_Intron	NM_001001668	NP_001001668	Q6ECI4	ZN470_HUMAN	zinc finger protein 470	635	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0294)		CATCGTAAATCCCTTACTCTG	0.423													7	25					0	0	0.00198382	0	0
PEG3	5178	broad.mit.edu	37	19	57326440	57326440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:57326440C>T	uc002qnu.2	-	7	3721	c.3370G>A	c.(3370-3372)GAC>AAC	p.D1124N	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.D1095N|PEG3_uc002qnv.2_Missense_Mutation_p.D1124N|PEG3_uc002qnw.2_Missense_Mutation_p.D1000N|PEG3_uc002qnx.2_Missense_Mutation_p.D998N|PEG3_uc010etr.2_Missense_Mutation_p.D1124N	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1124	C2H2-type 6.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TTCTGATGGTCTGTGAGGTCT	0.488													52	89					0	0	0.00361006	0	0
PEG3	5178	broad.mit.edu	37	19	57328555	57328555	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:57328555C>T	uc002qnu.2	-	7	1606	c.1255G>A	c.(1255-1257)GGT>AGT	p.G419S	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.G390S|PEG3_uc002qnv.2_Missense_Mutation_p.G419S|PEG3_uc002qnw.2_Missense_Mutation_p.G295S|PEG3_uc002qnx.2_Missense_Mutation_p.G293S|PEG3_uc010etr.2_Missense_Mutation_p.G419S	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	419					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		ATCTCACTACCACATTCAAAG	0.498													33	127					0	0	0.00283554	0	0
ZNF304	57343	broad.mit.edu	37	19	57868827	57868827	+	Silent	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:57868827T>C	uc010ygw.1	+	3	1978	c.1590T>C	c.(1588-1590)CCT>CCC	p.P530P	ZNF304_uc010etw.2_Silent_p.P577P|ZNF304_uc010etx.2_Silent_p.P488P	NM_020657	NP_065708	Q9HCX3	ZN304_HUMAN	zinc finger protein 304	530					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0265)		GAGCAAAGCCTTATGAGTGCA	0.453													11	16					0	0	0.00185496	0	0
ZNF419	79744	broad.mit.edu	37	19	58004510	58004510	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:58004510C>T	uc002qov.2	+	5	825	c.585C>T	c.(583-585)GCC>GCT	p.A195A	ZNF547_uc002qpm.3_Intron|ZNF419_uc010ety.1_Silent_p.A196A|ZNF419_uc010etz.1_Silent_p.A183A|ZNF419_uc010eua.1_Silent_p.A182A|ZNF419_uc002qow.2_Silent_p.A163A|ZNF419_uc010eub.1_Silent_p.A150A|ZNF419_uc010euc.1_Silent_p.A149A	NM_024691	NP_078967	Q96HQ0	ZN419_HUMAN	zinc finger protein 419 isoform 2	195					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0252)|Lung(386;0.171)		GTAGGGAGGCCTTTCATGCTG	0.483													12	26					0	0	0.000978159	0	0
ZSCAN4	201516	broad.mit.edu	37	19	58189571	58189571	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:58189571G>A	uc002qpu.2	+	5	1297	c.600G>A	c.(598-600)TCG>TCA	p.S200S		NM_152677	NP_689890	Q8NAM6	ZSCA4_HUMAN	zinc finger and SCAN domain containing 4	200					telomere maintenance via telomere lengthening|viral reproduction	nuclear chromosome, telomeric region	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		ACAGTTCTTCGAAAACTACTC	0.403													20	36					0	0	0.00152264	0	0
ZNF418	147686	broad.mit.edu	37	19	58437893	58437893	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:58437893G>A	uc002qqs.1	-	4	1948	c.1656C>T	c.(1654-1656)TCC>TCT	p.S552S	ZNF418_uc010yhn.1_RNA|ZNF418_uc010yho.1_Silent_p.S467S	NM_133460	NP_597717	Q8TF45	ZN418_HUMAN	zinc finger protein 418	552	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0158)		GTCGAAGGAGGGAAGAGCTCT	0.453													24	82					0	0	0.00106085	0	0
ZNF606	80095	broad.mit.edu	37	19	58490821	58490821	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:58490821G>A	uc002qqw.2	-	7	1845	c.1227C>T	c.(1225-1227)TTC>TTT	p.F409F	ZNF606_uc010yhp.1_Silent_p.F319F	NM_025027	NP_079303	Q8WXB4	ZN606_HUMAN	zinc finger protein 606	409	C2H2-type 3; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)		AGCTCCAGATGAAAGACGTCC	0.393													28	57					0	0	0.000878237	0	0
ZNF606	80095	broad.mit.edu	37	19	58500040	58500040	+	Nonsense_Mutation	SNP	C	T	T	rs151102847		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:58500040C>T	uc002qqw.2	-	5	845	c.227G>A	c.(226-228)TGG>TAG	p.W76*	ZNF606_uc010yhp.1_5'UTR	NM_025027	NP_079303	Q8WXB4	ZN606_HUMAN	zinc finger protein 606	76	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)		CAGCTGCCCCCACTCTTCTTG	0.547													48	167					0	0	0.00361006	0	0
ZNF446	55663	broad.mit.edu	37	19	58988735	58988735	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:58988735G>A	uc002qsz.2	+	2	267	c.150G>A	c.(148-150)CTG>CTA	p.L50L	ZNF446_uc002qta.2_Silent_p.L50L|ZNF446_uc010eur.2_Silent_p.L50L	NM_017908	NP_060378	Q9NWS9	ZN446_HUMAN	zinc finger protein 446	50	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0164)|Lung(386;0.179)		TGCGTGAGCTGTGTTGCCAGT	0.657													51	46					0	0	0.00361006	0	0
ZBTB45	84878	broad.mit.edu	37	19	59028057	59028057	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:59028057G>A	uc002qtd.2	-	2	1276	c.984C>T	c.(982-984)CCC>CCT	p.P328P	ZBTB45_uc002qte.2_Silent_p.P328P|ZBTB45_uc002qtf.2_Silent_p.P328P	NM_032792	NP_116181	Q96K62	ZBT45_HUMAN	zinc finger and BTB domain containing 45	328	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0165)|Lung(386;0.18)		AGAGTGCAACGGGCGGCCCTG	0.692													7	21					0	0	0.00307968	0	0
SNTG2	54221	broad.mit.edu	37	2	1204876	1204876	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:1204876G>A	uc002qwq.2	+	9	807	c.679G>A	c.(679-681)GCT>ACT	p.A227T	SNTG2_uc010ewi.2_Missense_Mutation_p.A100T	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	227					central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		TCTGTCCATGGCTCGCATCTC	0.527													32	143					0	0	0.00283554	0	0
TPO	7173	broad.mit.edu	37	2	1500483	1500483	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:1500483G>A	uc002qww.2	+	13	2423	c.2332G>A	c.(2332-2334)GAG>AAG	p.E778K	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.E721K|TPO_uc002qwr.2_Missense_Mutation_p.E778K|TPO_uc002qwx.2_Missense_Mutation_p.E721K|TPO_uc010yio.1_Missense_Mutation_p.E605K|TPO_uc010yip.1_Missense_Mutation_p.E778K|TPO_uc002qwy.1_Missense_Mutation_p.E118K|TPO_uc002qwz.2_Intron	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	778	Extracellular (Potential).|Sushi.				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	CCAAGGCCGGGAGCAGCTCAC	0.552													80	102					0	0	0.00361006	0	0
PXDN	7837	broad.mit.edu	37	2	1652631	1652631	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:1652631C>T	uc002qxa.2	-	17	2985	c.2921G>A	c.(2920-2922)GGG>GAG	p.G974E		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	974					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		GCGGTGGTCCCCGGCCAGGAA	0.697													12	4					0	0	0.00185496	0	0
ASAP2	8853	broad.mit.edu	37	2	9474912	9474912	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:9474912C>T	uc002qzh.2	+	8	1072	c.732C>T	c.(730-732)TCC>TCT	p.S244S	ASAP2_uc002qzi.2_Silent_p.S244S	NM_003887	NP_003878	O43150	ASAP2_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	244					regulation of ARF GTPase activity	Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|protein binding|zinc ion binding				0						TCAAACCTTCCATTGAAACGC	0.393													26	80					0	0	0.00209593	0	0
KLF11	8462	broad.mit.edu	37	2	10188702	10188702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:10188702C>T	uc002raf.1	+	3	1400	c.1238C>T	c.(1237-1239)GCC>GTC	p.A413V	KLF11_uc010yjc.1_Missense_Mutation_p.A396V	NM_003597	NP_003588	O14901	KLF11_HUMAN	Kruppel-like factor 11	413	C2H2-type 1.				apoptosis|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|regulation of transcription involved in S phase of mitotic cell cycle	nucleus	sequence-specific DNA binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.133)|OV - Ovarian serous cystadenocarcinoma(76;0.228)		CACCTTAAGGCCCATCTTCGC	0.557											OREG0014425	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	70	219					0	0	0.00361006	0	0
ATP6V1C2	245973	broad.mit.edu	37	2	10922464	10922464	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:10922464G>C	uc002ras.2	+	13	1266	c.1157G>C	c.(1156-1158)CGA>CCA	p.R386P	ATP6V1C2_uc002rat.2_Missense_Mutation_p.R340P	NM_001039362	NP_001034451	Q8NEY4	VATC2_HUMAN	vacuolar H+ ATPase C2 isoform a	386					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting V-type ATPase, V1 domain				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.15)|OV - Ovarian serous cystadenocarcinoma(76;0.152)		TCTGTCTTCCGACATCTGGAT	0.443													39	28					0	0	0.00128727	0	0
KCNF1	3754	broad.mit.edu	37	2	11053071	11053071	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:11053071G>A	uc002rax.2	+	1	1009	c.519G>A	c.(517-519)GAG>GAA	p.E173E		NM_002236	NP_002227	Q9H3M0	KCNF1_HUMAN	potassium voltage-gated channel, subfamily F,	173	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.128)		AGTTCCTGGAGAAGCCCGAGT	0.692													7	37					0	0	0.00307968	0	0
NBAS	51594	broad.mit.edu	37	2	15534408	15534408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:15534408G>A	uc002rcc.1	-	28	3226	c.3200C>T	c.(3199-3201)TCT>TTT	p.S1067F	NBAS_uc010exl.1_Missense_Mutation_p.S139F|NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	1067										ovary(2)|liver(1)|skin(1)	4						TTCTGAGCTAGATTGAGTGTT	0.353													20	26					0	0	0.00121646	0	0
NBAS	51594	broad.mit.edu	37	2	15614280	15614280	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:15614280G>A	uc002rcc.1	-	15	1536	c.1510C>T	c.(1510-1512)CCA>TCA	p.P504S	NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	504										ovary(2)|liver(1)|skin(1)	4						TTCCGTGGTGGTGCAAATCGC	0.453													52	59					0	0	0.00361006	0	0
DDX1	1653	broad.mit.edu	37	2	15763586	15763586	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:15763586C>T	uc002rce.2	+	19	1762	c.1474C>T	c.(1474-1476)CTG>TTG	p.L492L	DDX1_uc010yjq.1_Silent_p.L400L	NM_004939	NP_004930	Q92499	DDX1_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	492	Necessary for interaction with RELA.				DNA duplex unwinding|double-strand break repair|multicellular organismal development|regulation of transcription, DNA-dependent|regulation of translational initiation|spliceosome assembly|transcription, DNA-dependent	cleavage body|stress granule|tRNA-splicing ligase complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|DNA/RNA helicase activity|exonuclease activity|poly(A) RNA binding|protein binding|RNA helicase activity|transcription cofactor activity			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.197)	all_epithelial(98;2.96e-07)|Acute lymphoblastic leukemia(84;4.24e-05)|Ovarian(717;0.0694)	GBM - Glioblastoma multiforme(3;0.00969)	Epithelial(75;4.35e-05)|OV - Ovarian serous cystadenocarcinoma(76;0.133)		TATTAAAATCCTGAAAGGGGA	0.353													17	36					0	0	0.000958276	0	0
KCNS3	3790	broad.mit.edu	37	2	18112700	18112700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:18112700C>T	uc002rcv.2	+	3	876	c.425C>T	c.(424-426)ACC>ATC	p.T142I	KCNS3_uc002rcw.2_Missense_Mutation_p.T142I	NM_002252	NP_002243	Q9BQ31	KCNS3_HUMAN	potassium voltage-gated channel	142	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					GATGTGAGTACCGACTCCTCG	0.478													46	42					0	0	0.0025221	0	0
APOB	338	broad.mit.edu	37	2	21225916	21225916	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:21225916G>A	uc002red.2	-	29	12506	c.12378C>T	c.(12376-12378)ATC>ATT	p.I4126I		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4126					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ACCTCACGTCGATATCATCAA	0.502													100	323					0	0	0.00361006	0	0
APOB	338	broad.mit.edu	37	2	21229324	21229324	+	Silent	SNP	G	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:21229324G>T	uc002red.2	-	26	10544	c.10416C>A	c.(10414-10416)ACC>ACA	p.T3472T		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3472	Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTCCTTTAGCGGTAGAGTACA	0.398													11	381					3.86212e-05	0.000105358	0.000673444	1	0
APOB	338	broad.mit.edu	37	2	21229420	21229420	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:21229420G>A	uc002red.2	-	26	10448	c.10320C>T	c.(10318-10320)TTC>TTT	p.F3440F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3440	Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GTTCTTGCTTGAAATTCATTC	0.373													215	275					0	0	0.00361006	0	0
APOB	338	broad.mit.edu	37	2	21230280	21230280	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:21230280C>T	uc002red.2	-	26	9588	c.9460G>A	c.(9460-9462)GAA>AAA	p.E3154K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3154					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CCTGTTTTTTCCCATAGAGAG	0.348													93	346					0	0	0.00361006	0	0
APOB	338	broad.mit.edu	37	2	21233907	21233907	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:21233907C>T	uc002red.2	-	26	5961	c.5833G>A	c.(5833-5835)GAT>AAT	p.D1945N		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1945					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CCTTTGTAATCATGAGAGAAA	0.468													133	364					0	0	0.00361006	0	0
APOB	338	broad.mit.edu	37	2	21234080	21234080	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:21234080G>A	uc002red.2	-	26	5788	c.5660C>T	c.(5659-5661)TCA>TTA	p.S1887L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1887					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CAGTGAGTCTGAATTATAGTT	0.488													95	323					0	0	0.00361006	0	0
APOB	338	broad.mit.edu	37	2	21249778	21249778	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:21249778C>T	uc002red.2	-	15	2254	c.2126G>A	c.(2125-2127)GGA>GAA	p.G709E		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	709					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TGGGAAAAATCCTTGCTTCCC	0.418													131	398					0	0	0.00361006	0	0
DNMT3A	1788	broad.mit.edu	37	2	25469116	25469116	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:25469116A>G	uc002rgc.2	-	11	1599	c.1342T>C	c.(1342-1344)TAC>CAC	p.Y448H	DNMT3A_uc002rgd.2_Missense_Mutation_p.Y448H|DNMT3A_uc010eyi.2_RNA|DNMT3A_uc002rgb.2_Missense_Mutation_p.Y259H	NM_022552	NP_072046	Q9Y6K1	DNM3A_HUMAN	DNA cytosine methyltransferase 3 alpha isoform	448					regulation of gene expression by genetic imprinting	cytoplasm|euchromatin|nuclear matrix	DNA (cytosine-5-)-methyltransferase activity|DNA binding|metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(133)|lung(4)|ovary(3)	140	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGTGGTGCGTAGGCAGCTGCC	0.552			Mis|F|N|S		AML								85	141					0	0	0.00361006	0	0
TMEM214	54867	broad.mit.edu	37	2	27258879	27258879	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:27258879C>T	uc002ria.3	+	5	789	c.679C>T	c.(679-681)CTG>TTG	p.L227L	TMEM214_uc010yle.1_RNA|TMEM214_uc002rib.3_Silent_p.L182L	NM_017727	NP_060197	Q6NUQ4	TM214_HUMAN	transmembrane protein 214 isoform 1	227						integral to membrane	protein binding				0						CCAGGCCATCCTGCAAGACAA	0.522													16	41					0	0	0.00074312	0	0
CAD	790	broad.mit.edu	37	2	27465189	27465189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:27465189G>A	uc002rji.2	+	40	6278	c.6116G>A	c.(6115-6117)CGG>CAG	p.R2039Q	CAD_uc010eyw.2_Missense_Mutation_p.R1976Q	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	2039	ATCase (Aspartate transcarbamylase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	AAGCACTGCCGGAGGCCAGTG	0.617													18	40					0	0	0.000958276	0	0
SLC30A3	7781	broad.mit.edu	37	2	27481640	27481640	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:27481640G>A	uc002rjk.2	-	2	444	c.258C>T	c.(256-258)TTC>TTT	p.F86F	SLC30A3_uc002rjj.2_5'Flank|SLC30A3_uc010ylh.1_Silent_p.F81F	NM_003459	NP_003450	Q99726	ZNT3_HUMAN	solute carrier family 30 (zinc transporter),	86	Helical; (Potential).				regulation of sequestering of zinc ion	cell junction|integral to plasma membrane|late endosome|membrane fraction|synaptic vesicle membrane	zinc transporting ATPase activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCCCAGCCATGAAGACAAAGC	0.602													14	88					0	0	0.000566183	0	0
PLB1	151056	broad.mit.edu	37	2	28800975	28800975	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:28800975G>A	uc002rmb.1	+	22	1435	c.1435G>A	c.(1435-1437)GAT>AAT	p.D479N	PLB1_uc010ezj.1_Missense_Mutation_p.D490N|PLB1_uc002rmc.2_Missense_Mutation_p.D167N|PLB1_uc002rmd.1_5'UTR	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	479	4 X 308-326 AA approximate repeats.|2.|Extracellular (Potential).				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					TTTCCACAGGGATCTACCTGT	0.557													28	36					0	0	0.00327116	0	0
FAM179A	165186	broad.mit.edu	37	2	29226426	29226426	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:29226426G>A	uc010ezl.2	+	6	1059	c.708G>A	c.(706-708)GTG>GTA	p.V236V	FAM179A_uc010ymm.1_Silent_p.V236V	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	236							binding			ovary(3)|skin(1)	4						GCGCCATCGTGATCCCACCCA	0.642													4	10					0	0	0.000602214	0	0
ALK	238	broad.mit.edu	37	2	29519850	29519850	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:29519850C>T	uc002rmy.2	-	9	2628	c.1721G>A	c.(1720-1722)GGG>GAG	p.G574E		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	574	MAM 2.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	TTGCTCCTTCCCGGTTTTGTT	0.567			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				16	34					0	0	0.00400662	0	0
LBH	81606	broad.mit.edu	37	2	30480424	30480424	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:30480424C>T	uc002rne.2	+	3	463	c.255C>T	c.(253-255)TTC>TTT	p.F85F		NM_030915	NP_112177	Q53QV2	LBH_HUMAN	limb bud and heart development homolog	85					multicellular organismal development|transcription, DNA-dependent	cytoplasm|nucleolus					0	Acute lymphoblastic leukemia(172;0.155)					CTGAGGAGTTCCTGGTCCAGG	0.577													16	55					0	0	0.000566183	0	0
CAPN13	92291	broad.mit.edu	37	2	30964829	30964829	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:30964829C>T	uc002rnn.2	-	14	1657	c.1481G>A	c.(1480-1482)GGA>GAA	p.G494E	CAPN13_uc002rnm.2_RNA|CAPN13_uc002rno.2_Missense_Mutation_p.G48E	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	494					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					TGAAGGGCTTCCCTGGATCAA	0.502													14	40					0	0	0.00244969	0	0
CAPN13	92291	broad.mit.edu	37	2	30966359	30966359	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:30966359G>A	uc002rnn.2	-	12	1511	c.1335C>T	c.(1333-1335)TTC>TTT	p.F445F	CAPN13_uc002rnm.2_RNA|CAPN13_uc002rno.2_5'UTR	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	445					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					AAGTCATGGTGAAGTTGCGGC	0.468													62	196					0	0	0.00361006	0	0
GALNT14	79623	broad.mit.edu	37	2	31135209	31135209	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:31135209C>T	uc002rnr.2	-	14	2000	c.1381_splice	c.e14-1	p.V461_splice	GALNT14_uc002rnq.2_Splice_Site_p.V441_splice|GALNT14_uc002rns.2_Splice_Site_p.V466_splice|GALNT14_uc010ymr.1_Splice_Site_p.V426_splice	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14							Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					AGGCCCATACCTGGGGAGAAA	0.547													16	83					0	0	0.000958276	0	0
XDH	7498	broad.mit.edu	37	2	31573079	31573079	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:31573079C>T	uc002rnv.1	-	25	2721	c.2642G>A	c.(2641-2643)CGA>CAA	p.R881Q		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	881		Substrate.		R->M: Abolishes xanthine oxidase activity.	purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	GAATAAAGCTCGTTCCATAAT	0.498													22	71					0	0	0.00229938	0	0
Unknown	0	broad.mit.edu	37	2	38709444	38709444	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:38709444C>T	uc002rqu.1	+	1	519	c.452C>T	c.(451-453)ACC>ATC	p.T151I						SubName: Full=RPLP0 protein;																		TCCAGGGGCACCATTGAAATC	0.537													10	36					0	0	0.000978159	0	0
DHX57	90957	broad.mit.edu	37	2	39088225	39088225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:39088225G>A	uc002rrf.2	-	5	1426	c.1327C>T	c.(1327-1329)CCC>TCC	p.P443S	DHX57_uc002rre.2_5'UTR|DHX57_uc002rrg.2_Missense_Mutation_p.P443S	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	443							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				GTCCTAGAGGGTACTGGCAGA	0.378													28	112					0	0	0.00178596	0	0
SLC8A1	6546	broad.mit.edu	37	2	40656217	40656217	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:40656217C>T	uc002rrx.2	-	1	1228	c.1204G>A	c.(1204-1206)GAA>AAA	p.E402K	SLC8A1_uc002rry.2_Missense_Mutation_p.E402K|SLC8A1_uc002rrz.2_Missense_Mutation_p.E402K|SLC8A1_uc002rsa.2_Missense_Mutation_p.E402K|SLC8A1_uc002rsd.3_Missense_Mutation_p.E402K|SLC8A1_uc002rsb.1_Missense_Mutation_p.E402K|SLC8A1_uc010fan.1_Missense_Mutation_p.E402K|SLC8A1_uc002rsc.1_Missense_Mutation_p.E402K	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	402	Calx-beta 1.|Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	GGGTCATTTTCAGTCACTTCA	0.483													13	27					0	0	0.00316338	0	0
THADA	63892	broad.mit.edu	37	2	43625187	43625187	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:43625187G>A	uc002rsw.3	-	29	4502	c.4150C>T	c.(4150-4152)CGA>TGA	p.R1384*	THADA_uc010far.2_Nonsense_Mutation_p.R579*|THADA_uc002rsx.3_Nonsense_Mutation_p.R1384*|THADA_uc002rsy.3_RNA|THADA_uc010fas.1_RNA|THADA_uc002rsz.2_Nonsense_Mutation_p.R1093*|THADA_uc010fat.1_Nonsense_Mutation_p.R531*	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	1384							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				AACAGAGTTCGAATGGTATTA	0.493													325	376					0	0	0.00361006	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43939406	43939406	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:43939406C>T	uc010yny.1	+	15	2427	c.2344C>T	c.(2344-2346)CCC>TCC	p.P782S	PLEKHH2_uc002rte.3_3'UTR|PLEKHH2_uc002rtf.3_Missense_Mutation_p.P781S	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	782	PH 1.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				TGCAGATTCTCCCAATATATT	0.418													106	430					0	0	0.00361006	0	0
LRPPRC	10128	broad.mit.edu	37	2	44171034	44171034	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:44171034C>T	uc002rtr.2	-	23	2355	c.2297_splice	c.e23-1	p.D766_splice	LRPPRC_uc010yob.1_Splice_Site_p.D666_splice	NM_133259	NP_573566	P42704	LPPRC_HUMAN	leucine-rich PPR motif-containing protein						mitochondrion transport along microtubule|mRNA transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed nuclear chromosome|cytoskeleton|mitochondrial nucleoid|nuclear inner membrane|nuclear outer membrane|nucleoplasm|perinuclear region of cytoplasm	beta-tubulin binding|microtubule binding|RNA binding			ovary(2)|skin(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				TTAATAGCATCTACAATGAAG	0.368													75	223					0	0	0.00361006	0	0
SIX2	10736	broad.mit.edu	37	2	45235880	45235880	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:45235880C>T	uc002ruo.2	-	1	663	c.370G>A	c.(370-372)GGC>AGC	p.G124S	SIX2_uc002rup.2_Missense_Mutation_p.G124S	NM_016932	NP_058628	Q9NPC8	SIX2_HUMAN	SIX homeobox 2	124	Homeobox.					nucleus	sequence-specific DNA binding transcription factor activity			pancreas(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				GTCTCCTCGCCGTCCCAGATG	0.657													14	48					0	0	0.00244969	0	0
SRBD1	55133	broad.mit.edu	37	2	45645518	45645518	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:45645518G>A	uc002rus.2	-	18	2395	c.2319C>T	c.(2317-2319)ATC>ATT	p.I773I	SRBD1_uc010yoc.1_Silent_p.I292I	NM_018079	NP_060549	Q8N5C6	SRBD1_HUMAN	S1 RNA binding domain 1	773					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		hydrolase activity, acting on ester bonds|RNA binding			central_nervous_system(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)	LUSC - Lung squamous cell carcinoma(58;0.0917)|Lung(47;0.154)			AAAACGTTCGGATATAATCCT	0.413													27	85					0	0	0.00375469	0	0
FOXN2	3344	broad.mit.edu	37	2	48573792	48573792	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:48573792C>T	uc002rwh.1	+	3	754	c.439C>T	c.(439-441)CCA>TCA	p.P147S		NM_002158	NP_002149	P32314	FOXN2_HUMAN	T-cell leukemia virus enhancer factor	147	Fork-head.				embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.0272)|LUSC - Lung squamous cell carcinoma(58;0.036)			GGACCATTTTCCATATTTTGC	0.393													68	93					0	0	0.00361006	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48873632	48873632	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:48873632G>A	uc010yol.1	+	5	2447	c.2400G>A	c.(2398-2400)GAG>GAA	p.E800E	STON1-GTF2A1L_uc002rwp.1_Silent_p.E847E|GTF2A1L_uc002rws.1_Silent_p.E143E|GTF2A1L_uc010yom.1_Silent_p.E109E|GTF2A1L_uc002rwt.2_Silent_p.E143E	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	800					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			TGGTGACAGAGACTTCTGGAA	0.353													35	50					0	0	0.00128727	0	0
LHCGR	3973	broad.mit.edu	37	2	48952827	48952827	+	Missense_Mutation	SNP	C	T	T	rs140788691	byFrequency	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:48952827C>T	uc002rwu.3	-	4	441	c.371G>A	c.(370-372)CGA>CAA	p.R124Q	GTF2A1L_uc002rwt.2_Intron|LHCGR_uc002rwv.2_RNA	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	124	LRR 2.|Extracellular (Potential).			R -> G (in Ref. 1; AAA59515 and 4; CAA59234).	male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	GTATTTTAATCGGGGAAGATT	0.368									Familial_Male-Limited_Precocious_Puberty				70	60					0	0	0.00361006	0	0
FSHR	2492	broad.mit.edu	37	2	49244651	49244651	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:49244651C>T	uc002rww.2	-	4	425	c.351G>A	c.(349-351)CAG>CAA	p.Q117Q	FSHR_uc002rwx.2_Silent_p.Q117Q|FSHR_uc010fbn.2_Silent_p.Q117Q|FSHR_uc010fbo.1_RNA	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	117	Extracellular (Potential).|LRR 3.				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	TGGGAAGGTTCTGGAAGGCCT	0.393									Gonadal_Dysgenesis_46_XX				11	15					0	0	0.00136819	0	0
ERLEC1	27248	broad.mit.edu	37	2	54028624	54028624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:54028624C>T	uc002rxl.2	+	7	896	c.616C>T	c.(616-618)CCC>TCC	p.P206S	ASB3_uc002rxi.3_Intron|ERLEC1_uc002rxm.2_Missense_Mutation_p.P206S|ERLEC1_uc002rxn.2_Missense_Mutation_p.P206S	NM_015701	NP_056516	Q96DZ1	ERLEC_HUMAN	erlectin isoform 1	206					ER-associated protein catabolic process	endoplasmic reticulum lumen	glycoprotein binding|protein binding			ovary(2)	2						ACAGAACCGGCCCAGATCAAG	0.368													47	50					0	0	0.00361006	0	0
SPTBN1	6711	broad.mit.edu	37	2	54845318	54845318	+	Silent	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:54845318T>C	uc002rxu.2	+	7	1000	c.751T>C	c.(751-753)TTG>CTG	p.L251L	SPTBN1_uc002rxv.1_Silent_p.L251L|SPTBN1_uc002rxx.2_Silent_p.L238L	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	251	CH 2.|Actin-binding.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			CACTAAACTGTTGGACCCCGA	0.428													17	41					0	0	0.000958276	0	0
BCL11A	53335	broad.mit.edu	37	2	60688589	60688589	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:60688589C>T	uc002sae.1	-	4	1686	c.1458G>A	c.(1456-1458)GAG>GAA	p.E486E	BCL11A_uc002sab.2_Silent_p.E486E|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Silent_p.E155E|BCL11A_uc010ypj.1_Silent_p.E452E|BCL11A_uc002sad.1_Silent_p.E334E|BCL11A_uc002saf.1_Silent_p.E452E	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	486	Glu-rich.				negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			cctcctcttcctcctcgtccc	0.418			T	IGH@	B-CLL								40	142					0	0	0.00128727	0	0
BCL11A	53335	broad.mit.edu	37	2	60689025	60689025	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:60689025C>T	uc002sae.1	-	4	1250	c.1022G>A	c.(1021-1023)AGG>AAG	p.R341K	BCL11A_uc002sab.2_Missense_Mutation_p.R341K|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Intron|BCL11A_uc010ypj.1_Missense_Mutation_p.R307K|BCL11A_uc002sad.1_Missense_Mutation_p.R189K|BCL11A_uc002saf.1_Missense_Mutation_p.R307K	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	341	Pro-rich.				negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			TTGCAGTAACCTTTGCATAGG	0.652			T	IGH@	B-CLL								133	408					0	0	0.00361006	0	0
FAM161A	84140	broad.mit.edu	37	2	62067001	62067001	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:62067001G>A	uc010ypo.1	-	3	1240	c.1138C>T	c.(1138-1140)CGA>TGA	p.R380*	FAM161A_uc002sbm.3_Nonsense_Mutation_p.R380*|FAM161A_uc002sbn.3_Nonsense_Mutation_p.R190*|FAM161A_uc010fcm.1_RNA|FAM161A_uc010fcn.1_Nonsense_Mutation_p.R271*	NM_032180	NP_115556	Q3B820	F161A_HUMAN	hypothetical protein LOC84140	380					response to stimulus|visual perception	centrosome				large_intestine(2)|ovary(1)	3						CTAAGGTTTCGATAGAGCTCT	0.433													44	48					0	0	0.00285205	0	0
BMP10	27302	broad.mit.edu	37	2	69093550	69093550	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:69093550C>T	uc002sez.1	-	2	647	c.488G>A	c.(487-489)CGG>CAG	p.R163Q		NM_014482	NP_055297	O95393	BMP10_HUMAN	bone morphogenetic protein 10 preproprotein	163					activin receptor signaling pathway|adult heart development|atrial cardiac muscle tissue morphogenesis|BMP signaling pathway|cardiac muscle cell proliferation|heart trabecula formation|negative regulation of cardiac muscle hypertrophy|negative regulation of cell growth|negative regulation of endothelial cell migration|Notch signaling pathway|pathway-restricted SMAD protein phosphorylation|positive regulation of cardiac muscle cell proliferation|positive regulation of cardiac muscle hypertrophy|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent|sarcomere organization|ventricular cardiac muscle cell development|ventricular cardiac muscle tissue morphogenesis	cell surface|extracellular space|Z disc	cytokine activity|growth factor activity|receptor serine/threonine kinase binding			ovary(2)	2						GGTAATTTTCCGGTCTACTCC	0.443													8	43					0	0	0.000442599	0	0
CD207	50489	broad.mit.edu	37	2	71061152	71061152	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:71061152C>T	uc002shg.2	-	3	238	c.191_splice	c.e3-1	p.Y64_splice		NM_015717	NP_056532	Q9UJ71	CLC4K_HUMAN	CD207 antigen, langerin						defense response to virus	endocytic vesicle|integral to membrane	mannose binding			ovary(1)|lung(1)	2						AACCGGGGATCTGGGATTGAG	0.498													5	12					0	0	0.00116845	0	0
VAX2	25806	broad.mit.edu	37	2	71160080	71160080	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:71160080C>T	uc002shh.2	+	3	651	c.619C>T	c.(619-621)CTG>TTG	p.L207L	ATP6V1B1_uc002shi.1_5'Flank|ATP6V1B1_uc002shj.2_5'Flank|ATP6V1B1_uc010fdv.2_5'Flank|ATP6V1B1_uc010fdw.2_5'Flank	NM_012476	NP_036608	Q9UIW0	VAX2_HUMAN	ventral anterior homeobox 2	207					ectoderm development|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GACCCCTAGCCTGCCAGGCCT	0.697													12	35					0	0	0.00185496	0	0
ZNF638	27332	broad.mit.edu	37	2	71655768	71655768	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:71655768C>T	uc002shx.2	+	25	5956	c.5637C>T	c.(5635-5637)TTC>TTT	p.F1879F	ZNF638_uc002shy.2_Silent_p.F1879F|ZNF638_uc002shz.2_Silent_p.F1879F|ZNF638_uc002sia.2_Silent_p.F1879F|ZNF638_uc010fed.2_Intron|ZNF638_uc002sic.2_Silent_p.F976F|ZNF638_uc002sid.2_Silent_p.F248F	NM_014497	NP_055312	Q14966	ZN638_HUMAN	zinc finger protein 638	1879					RNA splicing	cytoplasm|nuclear speck	double-stranded DNA binding|nucleotide binding|RNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						AAGAGGCCTTCCAGATGAGTG	0.388													43	105					0	0	0.00195071	0	0
DYSF	8291	broad.mit.edu	37	2	71894640	71894640	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:71894640G>A	uc002sie.2	+	47	5711	c.5335G>A	c.(5335-5337)GAG>AAG	p.E1779K	DYSF_uc010feg.2_Missense_Mutation_p.E1810K|DYSF_uc010feh.2_Missense_Mutation_p.E1786K|DYSF_uc002sig.3_Missense_Mutation_p.E1765K|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.E1800K|DYSF_uc010fef.2_Missense_Mutation_p.E1817K|DYSF_uc010fei.2_Missense_Mutation_p.E1796K|DYSF_uc010fek.2_Missense_Mutation_p.E1797K|DYSF_uc010fej.2_Missense_Mutation_p.E1787K|DYSF_uc010fel.2_Missense_Mutation_p.E1766K|DYSF_uc010feo.2_Missense_Mutation_p.E1811K|DYSF_uc010fem.2_Missense_Mutation_p.E1801K|DYSF_uc010fen.2_Missense_Mutation_p.E1818K|DYSF_uc002sif.2_Missense_Mutation_p.E1780K|DYSF_uc010yqy.1_Missense_Mutation_p.E660K|DYSF_uc010yqz.1_Missense_Mutation_p.E540K	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1779	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GCCAGACATCGAGCAGGTAGG	0.632													9	30					0	0	0.000274275	0	0
FBXO41	150726	broad.mit.edu	37	2	73491469	73491469	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:73491469G>A	uc002sjb.1	-	6	1926	c.1926C>T	c.(1924-1926)TTC>TTT	p.F642F		NM_001080410	NP_001073879	Q8TF61	FBX41_HUMAN	F-box protein 41	581						intracellular	protein binding|zinc ion binding			breast(2)|pancreas(1)	3						GGCGGGCCACGAAGCGCCAGT	0.632													43	59					0	0	0.00285205	0	0
ALMS1	7840	broad.mit.edu	37	2	73677368	73677368	+	Silent	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:73677368T>C	uc002sje.1	+	10	3828	c.3717T>C	c.(3715-3717)TCT>TCC	p.S1239S	ALMS1_uc002sjf.1_Silent_p.S1195S|ALMS1_uc002sjg.2_Silent_p.S625S|ALMS1_uc002sjh.1_Silent_p.S625S	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1237	15.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						CCTCTGCTTCTTACTCACACA	0.478													34	41					0	0	0.00209593	0	0
ACTG2	72	broad.mit.edu	37	2	74129555	74129555	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:74129555C>T	uc002sjw.2	+	3	317	c.195C>T	c.(193-195)ATC>ATT	p.I65I	ACTG2_uc010fex.1_Silent_p.I65I|ACTG2_uc010fey.2_Silent_p.I65I|ACTG2_uc010yrn.1_Intron	NM_001615	NP_001606	P63267	ACTH_HUMAN	actin, gamma 2 propeptide	65					muscle contraction	cytoskeleton|cytosol	ATP binding				0						AGCGAGGGATCCTAACTCTCA	0.468													9	46					0	0	0.000274275	0	0
TTC31	64427	broad.mit.edu	37	2	74718670	74718670	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:74718670C>T	uc002slt.2	+	8	770	c.747C>T	c.(745-747)CCC>CCT	p.P249P	TTC31_uc002sls.2_Silent_p.P178P|TTC31_uc010yrv.1_Silent_p.P105P|TTC31_uc002slu.2_Silent_p.P105P	NM_022492	NP_071937	Q49AM3	TTC31_HUMAN	tetratricopeptide repeat domain 31	249							binding				0						GGGATTGGCCCCTCAGTGCCC	0.567													136	140					0	0	0.00361006	0	0
LRRTM4	80059	broad.mit.edu	37	2	77746589	77746589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:77746589G>A	uc002snr.2	-	3	821	c.406C>T	c.(406-408)CGC>TGC	p.R136C	LRRTM4_uc002snq.2_Missense_Mutation_p.R136C|LRRTM4_uc002sns.2_Missense_Mutation_p.R136C|LRRTM4_uc002snt.2_Missense_Mutation_p.R137C	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	136	LRR 4.|Extracellular (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		TCCAGATTGCGGAGATTGGGA	0.383													9	35					0	0	0.000978159	0	0
FABP1	2168	broad.mit.edu	37	2	88425751	88425751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:88425751C>T	uc002sst.1	-	2	226	c.184G>A	c.(184-186)GAA>AAA	p.E62K	FABP1_uc002ssu.2_Missense_Mutation_p.E62K	NM_001443	NP_001434	P07148	FABPL_HUMAN	fatty acid binding protein 1, liver	62					organ morphogenesis						0						ACCGTGAATTCGTTTTGGATC	0.517													111	151					0	0	0.00361006	0	0
Unknown	0	broad.mit.edu	37	2	89156784	89156784	+	RNA	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:89156784G>A	uc002sti.1	-	1		c.3491C>T			uc002stj.1_RNA					Homo sapiens cDNA FLJ46682 fis, clone TRACH3011082, moderately similar to Ig kappa chain V-III region HAH precursor.																		ACCGCAATAGGGGTAGGTCCC	0.522													6	5					0	0	0.00116845	0	0
Unknown	0	broad.mit.edu	37	2	89459279	89459279	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:89459279C>T	uc010ytr.1	-	29		c.3915G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GCAGCATCTTCAGCTTCCAGG	0.483													40	144					0	0	0.00361006	0	0
Unknown	0	broad.mit.edu	37	2	89495564	89495564	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:89495564G>A	uc010ytr.1	-	25		c.3296_splice	c.e25+1		uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		TAGCACTGTGGGAGGATCTTG	0.527													9	15					0	0	0.000978159	0	0
Unknown	0	broad.mit.edu	37	2	90260245	90260245	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:90260245C>T	uc010fhm.2	+	30		c.4228C>T								Parts of antibodies, mostly variable regions.																		ATTATAGTTTCCCTCCCACAG	0.498													19	73					0	0	0.00121646	0	0
Unknown	0	broad.mit.edu	37	2	91679115	91679115	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:91679115C>T	uc010yua.1	+	1		c.29C>T								Homo sapiens clone CIC 03 anticardiolipin immunoglobulin light chain mRNA, partial cds.																		TCTCCATCCTCCCTGTCTGCA	0.438													12	344					0	0	0.000958276	0	0
PROM2	150696	broad.mit.edu	37	2	95954681	95954681	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:95954681C>T	uc002suh.1	+	23	2575	c.2442C>T	c.(2440-2442)AGC>AGT	p.S814S	PROM2_uc002sui.2_Silent_p.S814S|PROM2_uc002suj.2_Silent_p.S468S|PROM2_uc002suk.2_Silent_p.S814S|PROM2_uc002sul.2_Silent_p.S340S|PROM2_uc002sum.2_RNA	NM_144707	NP_653308	Q8N271	PROM2_HUMAN	prominin 2 precursor	814	Cytoplasmic (Potential).					apical plasma membrane|basolateral plasma membrane|cilium membrane|integral to membrane|microvillus membrane				ovary(1)	1						GACACTGCAGCTCCACCAGCT	0.577													24	89					0	0	0.000878237	0	0
ASTL	431705	broad.mit.edu	37	2	96789615	96789615	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:96789615G>A	uc010yui.1	-	9	1270	c.1270C>T	c.(1270-1272)CAT>TAT	p.H424Y		NM_001002036	NP_001002036	Q6HA08	ASTL_HUMAN	astacin-like metalloendopeptidase precursor	424					proteolysis		metalloendopeptidase activity|zinc ion binding				0						CCCTTGAAATGATTTCTAGGT	0.577													27	51					0	0	0.00178596	0	0
AFF3	3899	broad.mit.edu	37	2	100623240	100623240	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:100623240G>A	uc002tag.2	-	6	963	c.727C>T	c.(727-729)CAG>TAG	p.Q243*	AFF3_uc002taf.2_Nonsense_Mutation_p.Q268*|AFF3_uc010fiq.1_Nonsense_Mutation_p.Q243*|AFF3_uc010yvr.1_Nonsense_Mutation_p.Q397*|AFF3_uc002tah.1_Nonsense_Mutation_p.Q268*|AFF3_uc010fir.1_Nonsense_Mutation_p.Q320*|AFF3_uc002tai.2_Nonsense_Mutation_p.Q165*	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	243					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						TCAGGGGCCTGATCTTGGCCG	0.577													9	45					0	0	0.000442599	0	0
LONRF2	164832	broad.mit.edu	37	2	100915380	100915380	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:100915380C>T	uc002tal.3	-	7	2034	c.1394G>A	c.(1393-1395)GGA>GAA	p.G465E	LONRF2_uc010yvs.1_RNA	NM_198461	NP_940863	Q1L5Z9	LONF2_HUMAN	LON peptidase N-terminal domain and ring finger	465	RING-type.|TPR 6.				proteolysis		ATP-dependent peptidase activity|zinc ion binding			large_intestine(1)|skin(1)	2						AAATGTGTGTCCACAGGGCGT	0.443													120	155					0	0	0.00361006	0	0
IL18R1	8809	broad.mit.edu	37	2	102984507	102984507	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:102984507G>A	uc002tbw.3	+	3	431	c.281G>A	c.(280-282)GGA>GAA	p.G94E	IL18R1_uc010ywb.1_Missense_Mutation_p.G94E|IL18R1_uc010ywc.1_Missense_Mutation_p.G94E|IL18R1_uc010ywd.1_Intron|IL18R1_uc010fiy.2_Missense_Mutation_p.G94E	NM_003855	NP_003846	Q13478	IL18R_HUMAN	interleukin 18 receptor 1 precursor	94	Ig-like C2-type 1.|Extracellular (Potential).				innate immune response	integral to membrane|plasma membrane	interleukin-1 receptor activity			ovary(2)|pancreas(1)	3						AATGACACAGGATCTTACTTT	0.408													33	124					0	0	0.000953801	0	0
IL18R1	8809	broad.mit.edu	37	2	103010956	103010956	+	Missense_Mutation	SNP	C	T	T	rs141625347		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:103010956C>T	uc002tbw.3	+	10	1289	c.1139C>T	c.(1138-1140)TCT>TTT	p.S380F	IL18R1_uc010ywc.1_Missense_Mutation_p.S379F|IL18R1_uc010ywd.1_Missense_Mutation_p.S224F|IL18R1_uc010fiy.2_Missense_Mutation_p.S380F	NM_003855	NP_003846	Q13478	IL18R_HUMAN	interleukin 18 receptor 1 precursor	380	TIR.|Cytoplasmic (Potential).				innate immune response	integral to membrane|plasma membrane	interleukin-1 receptor activity			ovary(2)|pancreas(1)	3						GCTTTTGTGTCTTACCTAAAA	0.358													20	48					0	0	0.00121646	0	0
SLC9A2	6549	broad.mit.edu	37	2	103236409	103236409	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:103236409G>A	uc002tca.2	+	1	244	c.102G>A	c.(100-102)GAG>GAA	p.E34E		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	34	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						cCCTGGCGGAGACCTTGCTGA	0.448													10	7					0	0	0.000673444	0	0
MRPS9	64965	broad.mit.edu	37	2	105708940	105708940	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:105708940C>T	uc002tcn.3	+	8	801	c.733C>T	c.(733-735)CGA>TGA	p.R245*		NM_182640	NP_872578	P82933	RT09_HUMAN	mitochondrial ribosomal protein S9 precursor	245					DNA damage response, detection of DNA damage|translation	mitochondrial small ribosomal subunit	protein binding|structural constituent of ribosome				0						GCAGAGGTTTCGAAGAAGTGT	0.393													12	62					0	0	0.00136819	0	0
RGPD3	653489	broad.mit.edu	37	2	107041433	107041433	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:107041433G>A	uc010ywi.1	-	20	3047	c.2990C>T	c.(2989-2991)TCA>TTA	p.S997L		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	997					intracellular transport		binding			ovary(1)	1						TCCAGCACCTGAAAATCCCTT	0.378													100	147					0	0	0.00361006	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107450509	107450509	+	Missense_Mutation	SNP	G	A	A	rs138821621		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:107450509G>A	uc002tdq.2	-	3	1156	c.1037C>T	c.(1036-1038)TCG>TTG	p.S346L	ST6GAL2_uc002tdr.2_Missense_Mutation_p.S346L|ST6GAL2_uc002tds.3_Missense_Mutation_p.S346L	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	346	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						TCTTACCTGCGAATTAATGAT	0.393													87	79					0	0	0.00361006	0	0
RGPD4	285190	broad.mit.edu	37	2	108477284	108477284	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:108477284G>A	uc010ywk.1	+	13	1903	c.1821G>A	c.(1819-1821)TGG>TGA	p.W607*	RGPD4_uc002tdu.2_5'UTR|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	607	TPR 2.				intracellular transport		binding			skin(2)	2						TTCATTATTGGAAGAAAGTTT	0.323													74	81					0	0	0.00361006	0	0
SULT1C3	442038	broad.mit.edu	37	2	108872051	108872051	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:108872051C>T	uc010ywo.1	+	4	423	c.423C>T	c.(421-423)CCC>CCT	p.P141P		NM_001008743	NP_001008743	Q6IMI6	ST1C3_HUMAN	sulfotransferase family, cytosolic, 1C, member	141	PAPS.					cytoplasm	alcohol sulfotransferase activity			skin(1)	1						CCAGAAATCCCAAGGATTGCC	0.418													12	46					0	0	0.00400662	0	0
RANBP2	5903	broad.mit.edu	37	2	109380827	109380827	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:109380827C>T	uc002tem.3	+	20	3958	c.3832C>T	c.(3832-3834)CCA>TCA	p.P1278S		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	1278	RanBD1 1.				carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						GTTGCCAAAACCAGAACAACT	0.393													8	82					0	0	0.000442599	0	0
IL1F10	84639	broad.mit.edu	37	2	113831960	113831960	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:113831960G>A	uc002tiu.2	+	3	162	c.87G>A	c.(85-87)GTG>GTA	p.V29V	IL1F10_uc002tiv.2_Silent_p.V29V|IL1F10_uc002tiw.2_5'Flank	NM_173161	NP_775184	Q8WWZ1	IL1FA_HUMAN	interleukin 1 family, member 10	29						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity			ovary(1)	1						AGCTGCTGGTGGGAGATCCTG	0.522													8	44					0	0	0.000442599	0	0
PSD4	23550	broad.mit.edu	37	2	113940402	113940402	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:113940402G>A	uc002tjc.2	+	2	552	c.369G>A	c.(367-369)AGG>AGA	p.R123R	PSD4_uc002tjd.2_5'UTR|PSD4_uc002tje.2_Silent_p.R122R|PSD4_uc002tjf.2_5'Flank	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	123					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						CTGCCCAGAGGGAGCACAGGC	0.612													11	45					0	0	0.00185496	0	0
DPP10	57628	broad.mit.edu	37	2	116485423	116485423	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:116485423A>C	uc002tla.1	+	8	1065	c.608A>C	c.(607-609)CAA>CCA	p.Q203P	DPP10_uc002tlb.1_Missense_Mutation_p.Q153P|DPP10_uc002tlc.1_Missense_Mutation_p.Q199P|DPP10_uc002tle.2_Missense_Mutation_p.Q207P|DPP10_uc002tlf.1_Missense_Mutation_p.Q196P	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	203	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						ATCTACTATCAACCTGATATA	0.308													12	15					0	0	0.000978159	0	0
PCDP1	200373	broad.mit.edu	37	2	120369265	120369265	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:120369265C>T	uc002tmb.2	+	14	1492	c.400C>T	c.(400-402)CAG>TAG	p.Q134*	PCDP1_uc010yyq.1_Nonsense_Mutation_p.Q264*	NM_001029996	NP_001025167	Q4G0U5	PCDP1_HUMAN	primary ciliary dyskinesia protein 1	420						cilium	calmodulin binding				0	Colorectal(110;0.196)					TGAGGAATTTCAGCGACTTAA	0.333													12	58					0	0	0.00244969	0	0
GLI2	2736	broad.mit.edu	37	2	121740331	121740331	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:121740331C>T	uc010flp.2	+	10	1588	c.1558C>T	c.(1558-1560)CTG>TTG	p.L520L	GLI2_uc002tmq.1_Silent_p.L192L|GLI2_uc002tmr.1_Silent_p.L175L|GLI2_uc002tmt.3_Silent_p.L192L|GLI2_uc002tmu.3_Silent_p.L175L|GLI2_uc002tmw.1_Silent_p.L503L	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	520	C2H2-type 3.				axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				CCTGGAGAACCTGAAGACACA	0.632													16	37					0	0	0.00074312	0	0
TFCP2L1	29842	broad.mit.edu	37	2	121991717	121991717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:121991717C>T	uc002tmx.2	-	12	1241	c.1148G>A	c.(1147-1149)CGA>CAA	p.R383Q	TFCP2L1_uc010flr.2_Missense_Mutation_p.R383Q|TFCP2L1_uc010flq.2_RNA	NM_014553	NP_055368	Q9NZI6	TF2L1_HUMAN	LBP-9	383					female pregnancy|steroid biosynthetic process	mitochondrion|nucleolus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			pancreas(2)|ovary(1)	3	Renal(3;0.01)					CAGGGGCACTCGATTCTGCTC	0.562													18	57					0	0	0.000958276	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125192188	125192188	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:125192188C>T	uc002tno.2	+	5	1021	c.657C>T	c.(655-657)TTC>TTT	p.F219F	CNTNAP5_uc010flu.2_Silent_p.F219F	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	219	Laminin G-like 1.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		GGGTCCTGTTCCATGGAGAAG	0.502													20	17					0	0	0.00121646	0	0
IWS1	55677	broad.mit.edu	37	2	128262702	128262702	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:128262702C>T	uc002ton.2	-	3	1080	c.777G>A	c.(775-777)CAG>CAA	p.Q259Q	IWS1_uc010yzl.1_RNA|uc002too.1_5'Flank|IWS1_uc010fma.2_RNA	NM_017969	NP_060439	Q96ST2	IWS1_HUMAN	IWS1 homolog	259	Glu-rich.|1.|3 X approximate tandem repeats.				transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0735)		AGTCACTGGCCTGGTGCCTCG	0.537													52	142					0	0	0.00361006	0	0
IWS1	55677	broad.mit.edu	37	2	128262941	128262941	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:128262941G>A	uc002ton.2	-	3	841	c.538C>T	c.(538-540)CCT>TCT	p.P180S	IWS1_uc010yzl.1_RNA|IWS1_uc010fma.2_RNA	NM_017969	NP_060439	Q96ST2	IWS1_HUMAN	IWS1 homolog	180	Glu-rich.				transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0735)		CTGATTTGAGGTTTTAGAGCA	0.488													75	107					0	0	0.00361006	0	0
POTEF	728378	broad.mit.edu	37	2	130872850	130872850	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:130872850G>A	uc010fmh.2	-	4	973	c.573C>T	c.(571-573)CTC>CTT	p.L191L		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	191	ANK 1.					cell cortex	ATP binding			skin(3)|ovary(2)	5						TGTCCAGCAGGAGTTTTACTA	0.433													31	40					0	0	0.00361006	0	0
SMPD4	55627	broad.mit.edu	37	2	130912694	130912694	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:130912694G>A	uc002tqq.1	-	15	2065	c.1545C>T	c.(1543-1545)CCC>CCT	p.P515P	SMPD4_uc002tqo.1_5'UTR|SMPD4_uc002tqp.1_Silent_p.P254P|SMPD4_uc010yzy.1_Silent_p.P264P|SMPD4_uc010yzz.1_Silent_p.P179P|SMPD4_uc002tqr.1_Silent_p.P486P|SMPD4_uc002tqs.1_Silent_p.P383P|SMPD4_uc002tqt.1_Silent_p.P364P|SMPD4_uc010zaa.1_Silent_p.P373P|SMPD4_uc010zab.1_Silent_p.P413P|SMPD4_uc010zac.1_Silent_p.P256P|SMPD4_uc010zad.1_Silent_p.P151P	NM_017951	NP_060421	Q9NXE4	NSMA3_HUMAN	sphingomyelin phosphodiesterase 4 isoform 2	476					sphingomyelin catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|trans-Golgi network	metal ion binding|protein binding|sphingomyelin phosphodiesterase activity|sphingomyelin phosphodiesterase D activity				0	Colorectal(110;0.1)				Phosphatidylserine(DB00144)	CAGCCAGGTTGGGCTGGGCAA	0.612													8	52					0	0	0.000442599	0	0
GPR148	344561	broad.mit.edu	37	2	131487309	131487309	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:131487309G>A	uc002trv.1	+	1	587	c.585G>A	c.(583-585)GAG>GAA	p.E195E		NM_207364	NP_997247	Q8TDV2	GP148_HUMAN	G protein-coupled receptor 148	195	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1	Colorectal(110;0.1)					CCCAGCTGGAGGAGCAAGGAG	0.582													22	69					0	0	0.00229938	0	0
LOC401010	401010	broad.mit.edu	37	2	132201225	132201225	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:132201225G>A	uc002tst.2	-	1	1243	c.777C>T	c.(775-777)TTC>TTT	p.F259F		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						GGCACCACAGGAAGAGGCAGT	0.567													5	23					0	0	0.000602214	0	0
LOC401010	401010	broad.mit.edu	37	2	132201396	132201396	+	Silent	SNP	G	A	A	rs140401332	by1000genomes	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:132201396G>A	uc002tst.2	-	1	1072	c.606C>T	c.(604-606)TTC>TTT	p.F202F		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						TGAAACTGATGAAGGGGAGGG	0.592													22	22					0	0	0.00278032	0	0
GPR39	2863	broad.mit.edu	37	2	133174800	133174800	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:133174800G>A	uc002ttl.2	+	1	654	c.185G>A	c.(184-186)GGA>GAA	p.G62E		NM_001508	NP_001499	O43194	GPR39_HUMAN	G protein-coupled receptor 39	62	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity|metal ion binding				0						CAGAAGAAAGGATACTTGCAG	0.517													29	67					0	0	0.00127121	0	0
NCKAP5	344148	broad.mit.edu	37	2	133540786	133540786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:133540786C>T	uc002ttp.2	-	14	3972	c.3598G>A	c.(3598-3600)GAG>AAG	p.E1200K	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1200							protein binding				0						GCTGTGATCTCCATGCTTGCT	0.488													18	54					0	0	0.000566183	0	0
ACMSD	130013	broad.mit.edu	37	2	135621140	135621140	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:135621140A>T	uc002ttz.2	+	5	492	c.425A>T	c.(424-426)CAA>CTA	p.Q142L	ACMSD_uc002tua.2_Missense_Mutation_p.Q84L	NM_138326	NP_612199	Q8TDX5	ACMSD_HUMAN	aminocarboxymuconate semialdehyde decarboxylase	142					quinolinate metabolic process|tryptophan catabolic process	cytosol	aminocarboxymuconate-semialdehyde decarboxylase activity|metal ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.115)		CCCGGGGTCCAAATTGGCACC	0.637													19	26					0	0	0.00188189	0	0
YSK4	80122	broad.mit.edu	37	2	135745570	135745570	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:135745570G>A	uc002tue.1	-	7	903	c.872C>T	c.(871-873)TCT>TTT	p.S291F	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Missense_Mutation_p.S178F|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Missense_Mutation_p.S19F|YSK4_uc002tui.3_Missense_Mutation_p.S308F	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	291							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		CTTAGGAAAAGAGCACATGTT	0.443													25	108					0	0	0.00106085	0	0
THSD7B	80731	broad.mit.edu	37	2	137928430	137928430	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:137928430G>A	uc002tva.1	+	6	1552	c.1552G>A	c.(1552-1554)GAA>AAA	p.E518K	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.E408K	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GCTGGCATCAGAAGGGATCTG	0.537													10	28					0	0	0.000673444	0	0
THSD7B	80731	broad.mit.edu	37	2	138413132	138413132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:138413132C>T	uc002tva.1	+	21	3920	c.3920C>T	c.(3919-3921)TCA>TTA	p.S1307L	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CACAGTGGTTCAATATCTCAT	0.507													6	11					0	0	0.00198382	0	0
LRP1B	53353	broad.mit.edu	37	2	141032145	141032145	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:141032145C>T	uc002tvj.1	-	85	13962	c.12990G>A	c.(12988-12990)GTG>GTA	p.V4330V		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4330	Extracellular (Potential).|EGF-like 13.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ATTCAGAATTCACACAATAGT	0.388										TSP Lung(27;0.18)			6	13					0	0	0.00198382	0	0
LRP1B	53353	broad.mit.edu	37	2	141773462	141773462	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:141773462C>T	uc002tvj.1	-	13	2965	c.1993G>A	c.(1993-1995)GAG>AAG	p.E665K	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	665	Extracellular (Potential).|LDL-receptor class B 7.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCATCTTCCTCCCAGTCTGTC	0.408										TSP Lung(27;0.18)			9	38					0	0	0.000673444	0	0
ARHGAP15	55843	broad.mit.edu	37	2	144525724	144525724	+	Missense_Mutation	SNP	G	A	A	rs147613962		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:144525724G>A	uc002tvm.3	+	14	1562	c.1411G>A	c.(1411-1413)GGC>AGC	p.G471S	ARHGAP15_uc002tvn.2_Missense_Mutation_p.G237S	NM_018460	NP_060930	Q53QZ3	RHG15_HUMAN	ARHGAP15	471					regulation of cell shape|small GTPase mediated signal transduction	cytosol|membrane	protein binding|Rac GTPase activator activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.151)		TAAGATCTTCGGCTCAGAGGA	0.413													21	24					0	0	0.00152264	0	0
ZEB2	9839	broad.mit.edu	37	2	145158812	145158812	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:145158812G>A	uc002tvu.2	-	7	1350	c.870C>T	c.(868-870)GCC>GCT	p.A290A	ZEB2_uc002tvv.2_Silent_p.A284A|ZEB2_uc010zbm.1_Silent_p.A261A|ZEB2_uc010fnp.2_Silent_p.A198A|ZEB2_uc010fnq.1_Silent_p.A319A	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	290	C2H2-type 3.					cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		TATATTTGAAGGCCTTGCCAC	0.443													76	85					0	0	0.00361006	0	0
ACVR2A	92	broad.mit.edu	37	2	148654035	148654035	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:148654035T>G	uc002twg.2	+	3	490	c.221T>G	c.(220-222)GTG>GGG	p.V74G	ACVR2A_uc010zbn.1_5'UTR|ACVR2A_uc002twh.2_Missense_Mutation_p.V74G	NM_001616	NP_001607	P27037	AVR2A_HUMAN	activin A receptor, type IIA precursor	74	Extracellular (Potential).				activin receptor signaling pathway|BMP signaling pathway|positive regulation of activin receptor signaling pathway|positive regulation of bone mineralization|positive regulation of erythrocyte differentiation|positive regulation of osteoblast differentiation|positive regulation of protein phosphorylation	cytoplasm|inhibin-betaglycan-ActRII complex|integral to plasma membrane	ATP binding|coreceptor activity|inhibin beta-A binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|transforming growth factor beta receptor activity			stomach(8)|large_intestine(2)|lung(1)|breast(1)|kidney(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.0969)		ATTGAAATAGTGAAACAAGGT	0.378													14	61					0	0	0.00400662	0	0
RIF1	55183	broad.mit.edu	37	2	152300066	152300067	+	Missense_Mutation	DNP	TT	CA	CA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:152300066_152300067TT>CA	uc002txm.2	+	18	1959_1960	c.1829_1830TT>CA	c.(1828-1830)CTT>CCA	p.L610P	RIF1_uc002txl.2_Missense_Mutation_p.L610P|RIF1_uc010fnv.1_Missense_Mutation_p.L574P|RIF1_uc002txn.2_Missense_Mutation_p.L610P|RIF1_uc002txo.2_Missense_Mutation_p.L610P	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	610					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		TTGGAATCACTTGTAGGCTGTG	0.307													74	110					0	0	6.4e-05	0	0
RIF1	55183	broad.mit.edu	37	2	152321761	152321761	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:152321761C>T	uc002txm.2	+	30	5857	c.5727C>T	c.(5725-5727)TCC>TCT	p.S1909S	RIF1_uc002txl.2_Silent_p.S1909S|RIF1_uc002txn.2_Silent_p.S1909S|RIF1_uc002txo.2_Silent_p.S1909S|RIF1_uc002txp.2_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	1909					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		TAACAGAATCCAATCTAGAGA	0.363													31	101					0	0	0.00283554	0	0
PKP4	8502	broad.mit.edu	37	2	159481448	159481448	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:159481448C>T	uc002tzv.2	+	7	922	c.662C>T	c.(661-663)TCT>TTT	p.S221F	PKP4_uc002tzt.1_Missense_Mutation_p.S73F|PKP4_uc002tzu.2_Missense_Mutation_p.S221F|PKP4_uc002tzw.2_Missense_Mutation_p.S221F|PKP4_uc002tzx.2_Intron|PKP4_uc002tzy.1_Intron|PKP4_uc002tzz.1_Missense_Mutation_p.S219F|PKP4_uc002uaa.2_Missense_Mutation_p.S73F	NM_003628	NP_003619	Q99569	PKP4_HUMAN	plakophilin 4 isoform a	221					cell adhesion	desmosome	protein binding			ovary(5)|skin(2)	7						AGAGCACAGTCTCCTTCTTAT	0.512										HNSCC(62;0.18)			33	104					0	0	0.00111076	0	0
LY75	4065	broad.mit.edu	37	2	160664998	160664998	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:160664998G>A	uc002ubc.3	-	33	4853	c.4784C>T	c.(4783-4785)ACC>ATC	p.T1595I	LY75_uc002ubb.3_Missense_Mutation_p.T1595I|LY75_uc010fos.2_Missense_Mutation_p.T1595I	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	1595	Extracellular (Potential).|C-type lectin 10.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		AACTCTCATGGTAATGTTATT	0.338													21	76					0	0	0.00152264	0	0
SLC4A10	57282	broad.mit.edu	37	2	162719394	162719394	+	Silent	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:162719394T>A	uc002ubx.3	+	6	772	c.588T>A	c.(586-588)CTT>CTA	p.L196L	SLC4A10_uc010fpa.1_Silent_p.L208L|SLC4A10_uc010zcr.1_RNA|SLC4A10_uc002uby.3_Silent_p.L196L|SLC4A10_uc010zcs.1_Silent_p.L207L	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	196	Cytoplasmic (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						ATATGGTTCTTGACCAACAAG	0.458													8	14					0	0	0.000442599	0	0
SLC4A10	57282	broad.mit.edu	37	2	162833288	162833288	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:162833288C>T	uc002ubx.3	+	25	3430	c.3246C>T	c.(3244-3246)ATC>ATT	p.I1082I	SLC4A10_uc002uby.3_Silent_p.I1052I|SLC4A10_uc010zcs.1_Silent_p.I1063I	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	1082	Cytoplasmic (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						CATCTGTGATCAATATATCTG	0.363													10	7					0	0	0.000673444	0	0
DPP4	1803	broad.mit.edu	37	2	162873628	162873628	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:162873628C>T	uc002ubz.2	-	17	2019	c.1458G>A	c.(1456-1458)GTG>GTA	p.V486V	DPP4_uc010fpb.2_Silent_p.V162V	NM_001935	NP_001926	P27487	DPP4_HUMAN	dipeptidylpeptidase IV	486	Extracellular (Potential).				cell adhesion|endothelial cell migration|negative regulation of extracellular matrix disassembly|positive regulation of cell proliferation|proteolysis|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation|T cell costimulation	apical plasma membrane|cell surface|endocytic vesicle|extracellular region|integral to membrane|invadopodium membrane|lamellipodium membrane|membrane raft	aminopeptidase activity|dipeptidyl-peptidase activity|protease binding|protein homodimerization activity|receptor activity|receptor binding|serine-type endopeptidase activity			ovary(3)	3					Sitagliptin(DB01261)	CTTTATCATTCACGCTGCTGT	0.343													13	24					0	0	0.00185496	0	0
GCG	2641	broad.mit.edu	37	2	163000608	163000608	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:163000608C>T	uc002ucc.2	-	5	564	c.465G>A	c.(463-465)ATG>ATA	p.M155I		NM_002054	NP_002045	P01275	GLUC_HUMAN	glucagon preproprotein	155					cell proliferation|cellular response to glucagon stimulus|energy reserve metabolic process|feeding behavior|regulation of insulin secretion	plasma membrane|soluble fraction	hormone activity				0					Exenatide(DB01276)|Phentolamine(DB00692)	GAATGGTGTTCATCTCATCAG	0.398													14	41					0	0	0.000566183	0	0
GCA	25801	broad.mit.edu	37	2	163204218	163204219	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:163204218_163204219CC>TT	uc002ucg.2	+	2	334_335	c.158_159CC>TT	c.(157-159)TCC>TTT	p.S53F	GCA_uc010zcu.1_Missense_Mutation_p.S34F	NM_012198	NP_036330	P28676	GRAN_HUMAN	grancalcin, EF-hand calcium binding protein	53	EF-hand 1.				cellular membrane fusion	cytoplasm|plasma membrane	calcium ion binding|protein homodimerization activity				0						GCTGGTGACTCCGTGTATACTT	0.421													13	38					0	0	6.4e-05	0	0
KCNH7	90134	broad.mit.edu	37	2	163241264	163241264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:163241264C>T	uc002uch.1	-	13	3108	c.2896G>A	c.(2896-2898)GAT>AAT	p.D966N		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	966	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TCTTCAAAATCGAGCCCAGAT	0.438													29	34					0	0	0.00106085	0	0
KCNH7	90134	broad.mit.edu	37	2	163693155	163693155	+	Missense_Mutation	SNP	C	T	T	rs138091231		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:163693155C>T	uc002uch.1	-	2	411	c.199G>A	c.(199-201)GAC>AAC	p.D67N	KCNH7_uc002uci.2_Missense_Mutation_p.D67N	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	67	Cytoplasmic (Potential).|PAS.				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TGGAGAAAGTCGCAGGTGCAT	0.507													9	42					0	0	0.000442599	0	0
FIGN	55137	broad.mit.edu	37	2	164467000	164467000	+	Missense_Mutation	SNP	G	A	A	rs2231904		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:164467000G>A	uc002uck.1	-	3	1653	c.1342C>T	c.(1342-1344)CGT>TGT	p.R448C		NM_018086	NP_060556	Q5HY92	FIGN_HUMAN	fidgetin	448						nuclear matrix	ATP binding|nucleoside-triphosphatase activity			large_intestine(2)|ovary(1)|skin(1)	4						GTAGCTGCACGGAGTCCAGGG	0.532													34	45					0	0	0.00209593	0	0
GRB14	2888	broad.mit.edu	37	2	165353883	165353883	+	Splice_Site	SNP	C	T	T	rs67960688		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:165353883C>T	uc002ucl.2	-	10	1762	c.1221_splice	c.e10+1	p.R407_splice	GRB14_uc010zcv.1_Splice_Site_p.R320_splice|GRB14_uc002ucm.2_Splice_Site	NM_004490	NP_004481	Q14449	GRB14_HUMAN	growth factor receptor-bound protein 14						blood coagulation|leukocyte migration	cytosol|endosome membrane|Golgi membrane|microsome|plasma membrane	SH3/SH2 adaptor activity			ovary(5)|upper_aerodigestive_tract(1)|lung(1)	7						GCTACTTGTACCCTCCAAGCG	0.408													46	38					0	0	0.00361006	0	0
SCN2A	6326	broad.mit.edu	37	2	166167084	166167084	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:166167084G>A	uc002udc.2	+	7	1239	c.949G>A	c.(949-951)GAT>AAT	p.D317N	SCN2A_uc002udd.2_Missense_Mutation_p.D317N|SCN2A_uc002ude.2_Missense_Mutation_p.D317N	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	317	I.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	ATTTAACTGGGATGAATATAT	0.259													5	23					0	0	0.000602214	0	0
SCN2A	6326	broad.mit.edu	37	2	166172168	166172168	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:166172168G>A	uc002udc.2	+	11	1861	c.1571G>A	c.(1570-1572)CGA>CAA	p.R524Q	SCN2A_uc002udd.2_Missense_Mutation_p.R524Q|SCN2A_uc002ude.2_Missense_Mutation_p.R524Q	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	524			R -> Q.	R -> L (in Ref. 1; AAA18895).	myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GACAGAGTCCGAAAATCGGAA	0.294													20	56					0	0	0.00121646	0	0
SCN1A	6323	broad.mit.edu	37	2	166848472	166848472	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:166848472G>A	uc010zcz.1	-	26	5298	c.5280C>T	c.(5278-5280)ATC>ATT	p.I1760I		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1771	IV.|Helical; Name=S6 of repeat IV; (By similarity).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	GGAAGGATATGATGATGTAAC	0.458													14	48					0	0	0.00244969	0	0
SCN1A	6323	broad.mit.edu	37	2	166892893	166892893	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:166892893C>T	uc010zcz.1	-	16	3079	c.3061G>A	c.(3061-3063)GAA>AAA	p.E1021K	SCN1A_uc002udo.3_Missense_Mutation_p.E901K|SCN1A_uc010fpk.2_Missense_Mutation_p.E873K	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1032						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TGAATAAATTCATATATTTTT	0.323													16	45					0	0	0.000566183	0	0
SCN9A	6335	broad.mit.edu	37	2	167055909	167055909	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:167055909G>A	uc010fpl.2	-	27	5548	c.5207C>T	c.(5206-5208)TCC>TTC	p.S1736F	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1747	Helical; Name=S6 of repeat IV; (Potential).|IV.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	AACCAGGAAGGATATGATGAT	0.403													135	120					0	0	0.00361006	0	0
SCN9A	6335	broad.mit.edu	37	2	167129170	167129170	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:167129170C>T	uc010fpl.2	-	17	3398	c.3057G>A	c.(3055-3057)CTG>CTA	p.L1019L	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1030						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TCTTAGTATTCAGATCTTCTG	0.328													7	20					0	0	0.00307968	0	0
XIRP2	129446	broad.mit.edu	37	2	168074748	168074748	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:168074748A>T	uc002udx.2	+	4	814	c.796A>T	c.(796-798)ATT>TTT	p.I266F	XIRP2_uc010fpn.2_Missense_Mutation_p.I299F|XIRP2_uc010fpo.2_Missense_Mutation_p.I266F|XIRP2_uc010fpp.2_Missense_Mutation_p.I266F|XIRP2_uc002udy.2_Missense_Mutation_p.I91F|XIRP2_uc010fpq.2_Missense_Mutation_p.I44F|XIRP2_uc010fpr.2_Missense_Mutation_p.I44F	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	91					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TGAGGACGAAATTACTTCTTC	0.398													27	40					0	0	0.00127121	0	0
XIRP2	129446	broad.mit.edu	37	2	168103231	168103231	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:168103231G>A	uc002udx.2	+	8	5347	c.5329G>A	c.(5329-5331)GAG>AAG	p.E1777K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E1602K|XIRP2_uc010fpq.2_Missense_Mutation_p.E1555K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1602					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ACAAGAAGGAGAGAAAGAAAT	0.403													11	22					0	0	0.00185496	0	0
XIRP2	129446	broad.mit.edu	37	2	168105146	168105146	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:168105146A>T	uc002udx.2	+	8	7262	c.7244A>T	c.(7243-7245)AAA>ATA	p.K2415I	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.K2240I|XIRP2_uc010fpq.2_Missense_Mutation_p.K2193I|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2240					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ATAACAGGAAAAACCGGTGTG	0.438													12	55					0	0	0.00136819	0	0
LASS6	253782	broad.mit.edu	37	2	169313054	169313054	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:169313054C>T	uc002ueb.1	+	1	220	c.96C>T	c.(94-96)TTC>TTT	p.F32F	LASS6_uc002uec.1_Silent_p.F32F	NM_203463	NP_982288	Q6ZMG9	CERS6_HUMAN	longevity assurance homolog 6	32	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			skin(1)	1						AGGCCACCTTCCCGCAGGCTG	0.582													9	54					0	0	0.000673444	0	0
NOSTRIN	115677	broad.mit.edu	37	2	169713205	169713205	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:169713205G>A	uc002ueg.2	+	12	974	c.970G>A	c.(970-972)GAA>AAA	p.E324K	NOSTRIN_uc002uef.2_Missense_Mutation_p.E381K|NOSTRIN_uc002uei.2_Missense_Mutation_p.E207K|NOSTRIN_uc010fpu.2_Missense_Mutation_p.E296K|NOSTRIN_uc002ueh.2_Missense_Mutation_p.E246K|NOSTRIN_uc002uej.2_Missense_Mutation_p.E207K|NOSTRIN_uc002uek.2_Missense_Mutation_p.E8K	NM_001039724	NP_001034813	Q8IVI9	NOSTN_HUMAN	nitric oxide synthase trafficker isoform 2	324					endocytosis|nitric oxide metabolic process|regulation of nitric-oxide synthase activity	cytoplasmic membrane-bounded vesicle|cytoskeleton|plasma membrane	protein binding				0						TTCAGGCCTGGAACGAATGCT	0.483													22	60					0	0	0.00229938	0	0
LRP2	4036	broad.mit.edu	37	2	170050321	170050321	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:170050321C>T	uc002ues.2	-	47	8993	c.8780G>A	c.(8779-8781)GGT>GAT	p.G2927D		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2927	LDL-receptor class A 21.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GTCATTATCACCGTCACAGAT	0.473													25	107					0	0	0.00278032	0	0
LRP2	4036	broad.mit.edu	37	2	170062083	170062083	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:170062083A>C	uc002ues.2	-	41	7834	c.7621T>G	c.(7621-7623)TTC>GTC	p.F2541V		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2541	LDL-receptor class B 27.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GGTACGCGGAAGTTTCCTCCC	0.488													16	48					0	0	0.000566183	0	0
LRP2	4036	broad.mit.edu	37	2	170072834	170072834	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:170072834C>T	uc002ues.2	-	35	5968	c.5755G>A	c.(5755-5757)GAA>AAA	p.E1919K		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1919	LDL-receptor class B 17.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TCCAGGTGTTCGAGGTTCCCA	0.502													8	38					0	0	0.000442599	0	0
LRP2	4036	broad.mit.edu	37	2	170099481	170099481	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:170099481C>T	uc002ues.2	-	24	3865	c.3652G>A	c.(3652-3654)GAT>AAT	p.D1218N	LRP2_uc010zdf.1_Missense_Mutation_p.D1081N	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1218	LDL-receptor class A 12.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CCTGCTTCATCCGAGTTGTCA	0.398													33	119					0	0	0.00283554	0	0
RAPGEF4	11069	broad.mit.edu	37	2	173883525	173883525	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:173883525G>A	uc002uhv.3	+	22	2337	c.2150G>A	c.(2149-2151)GGA>GAA	p.G717E	RAPGEF4_uc002uhw.3_Missense_Mutation_p.G573E	NM_007023	NP_008954	Q8WZA2	RPGF4_HUMAN	Rap guanine nucleotide exchange factor (GEF) 4	717					blood coagulation|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of insulin secretion|regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex|membrane fraction|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity|Ras GTPase binding|Ras guanyl-nucleotide exchange factor activity			large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.194)			ATGAGTTCCGGAGGAGGTAAC	0.502													60	66					0	0	0.00361006	0	0
HOXD13	3239	broad.mit.edu	37	2	176958087	176958087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:176958087G>A	uc002ukf.1	+	1	556	c.469G>A	c.(469-471)GCC>ACC	p.A157T		NM_000523	NP_000514	P35453	HXD13_HUMAN	homeobox D13	157					skeletal system development|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0526)|READ - Rectum adenocarcinoma(9;0.0678)		ATCGCCGCACGCCTCGCTGGG	0.642			T	NUP98	AML*								9	41					0	0	0.000442599	0	0
TTC30B	150737	broad.mit.edu	37	2	178416698	178416698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:178416698C>T	uc002uln.2	-	1	827	c.794G>A	c.(793-795)AGA>AAA	p.R265K	TTC30B_uc010zfc.1_Missense_Mutation_p.R37K	NM_152517	NP_689730	Q8N4P2	TT30B_HUMAN	tetratricopeptide repeat domain 30B	265					cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.00151)|Epithelial(96;0.00931)|all cancers(119;0.0362)			CTCATAGTTTCTCAGTTGGTA	0.512													45	120					0	0	0.00222228	0	0
DFNB59	494513	broad.mit.edu	37	2	179325105	179325105	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179325105G>A	uc002umi.3	+	6	1054	c.698G>A	c.(697-699)GGA>GAA	p.G233E	DFNB59_uc002umj.3_Missense_Mutation_p.G233E	NM_001042702	NP_001036167	Q0ZLH3	PJVK_HUMAN	deafness, autosomal recessive 59	233					sensory perception of sound						0			OV - Ovarian serous cystadenocarcinoma(117;0.00406)|Epithelial(96;0.0159)|all cancers(119;0.0564)			TCAAAAGGAGGATTTGAAAGG	0.328													35	31					0	0	0.00148497	0	0
TTN	7273	broad.mit.edu	37	2	179417082	179417082	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179417082T>A	uc010zfg.1	-	284	83065	c.82841A>T	c.(82840-82842)AAA>ATA	p.K27614I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.K21309I|TTN_uc010zfi.1_Missense_Mutation_p.K21242I|TTN_uc010zfj.1_Missense_Mutation_p.K21117I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	28541							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTTTCAGTTTTACTGAAGCG	0.378													6	33					0	0	0.00116845	0	0
TTN	7273	broad.mit.edu	37	2	179417696	179417696	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179417696C>T	uc010zfg.1	-	284	82451	c.82227G>A	c.(82225-82227)AAG>AAA	p.K27409K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.K21104K|TTN_uc010zfi.1_Silent_p.K21037K|TTN_uc010zfj.1_Silent_p.K20912K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	28336							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACCATGTTCTCTTGGTGGCAT	0.418													18	21					0	0	0.000958276	0	0
TTN	7273	broad.mit.edu	37	2	179466271	179466271	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179466271C>T	uc010zfg.1	-	236	47973	c.47749G>A	c.(47749-47751)GAT>AAT	p.D15917N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D9612N|TTN_uc010zfi.1_Missense_Mutation_p.D9545N|TTN_uc010zfj.1_Missense_Mutation_p.D9420N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16844							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTTTCAGATCTTTGGGTGGG	0.388													21	61					0	0	0.00278032	0	0
TTN	7273	broad.mit.edu	37	2	179470335	179470335	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179470335C>T	uc010zfg.1	-	228	46207	c.45983G>A	c.(45982-45984)GGA>GAA	p.G15328E	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G9023E|TTN_uc010zfi.1_Missense_Mutation_p.G8956E|TTN_uc010zfj.1_Missense_Mutation_p.G8831E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16255							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AATGATATATCCTTGGATGGG	0.448													11	41					0	0	0.000673444	0	0
TTN	7273	broad.mit.edu	37	2	179477638	179477638	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179477638C>T	uc010zfg.1	-	214	42330	c.42106G>A	c.(42106-42108)GGG>AGG	p.G14036R	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G7731R|TTN_uc010zfi.1_Missense_Mutation_p.G7664R|TTN_uc010zfj.1_Missense_Mutation_p.G7539R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14963							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGGGAACCCCTTCCGCCACT	0.493													8	17					0	0	0.000442599	0	0
TTN	7273	broad.mit.edu	37	2	179566258	179566258	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179566258C>T	uc010zfg.1	-	107	27087	c.26863G>A	c.(26863-26865)GAA>AAA	p.E8955K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E5616K|TTN_uc010fre.1_Missense_Mutation_p.E66K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9882							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTCTTACCTTCTGGTGGCACT	0.458													44	54					0	0	0.00361006	0	0
TTN	7273	broad.mit.edu	37	2	179597365	179597365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179597365C>T	uc010zfg.1	-	53	12915	c.12691G>A	c.(12691-12693)GGA>AGA	p.G4231R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G892R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5158							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGAGTAGATCCTTGGAAAGTG	0.463													4	15					0	0	0.00024832	0	0
TTN	7273	broad.mit.edu	37	2	179597422	179597422	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179597422G>A	uc010zfg.1	-	53	12858	c.12634C>T	c.(12634-12636)CCC>TCC	p.P4212S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P873S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5139							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTGAGCCGGGTTTAGTTACA	0.423													4	18					0	0	0.000602214	0	0
TTN	7273	broad.mit.edu	37	2	179597594	179597594	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179597594T>A	uc010zfg.1	-	52	12801	c.12577A>T	c.(12577-12579)AGC>TGC	p.S4193C	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S854C	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5120							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGTCTTTGCTTCCCACGGAA	0.433													9	21					0	0	0.000673444	0	0
TTN	7273	broad.mit.edu	37	2	179600731	179600731	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179600731G>A	uc010zfg.1	-	47	10934	c.10710C>T	c.(10708-10710)TTC>TTT	p.F3570F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.F231F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4497							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGTGCAGATGAACTTGGCTG	0.458													23	50					0	0	0.00395357	0	0
TTN	7273	broad.mit.edu	37	2	179605086	179605087	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179605086_179605087GG>AA	uc010zfh.1	-	46	12584_12585	c.12360_12361CC>TT	c.(12358-12363)GTCCCT>GTTTCT	p.P4121S	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.P4054S|TTN_uc010zfj.1_Missense_Mutation_p.P3929S|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTTCTGAAGGGACTAGGGGCT	0.47													10	14					0	0	6.4e-05	0	0
TTN	7273	broad.mit.edu	37	2	179611642	179611642	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179611642C>T	uc002unb.2	-	46	15709	c.15485G>A	c.(15484-15486)TGG>TAG	p.W5162*	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCGGAACGCCATATTTCATA	0.388													21	15					0	0	0.00121646	0	0
TTN	7273	broad.mit.edu	37	2	179613718	179613718	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179613718T>A	uc002unb.2	-	46	13633	c.13409A>T	c.(13408-13410)AAA>ATA	p.K4470I	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	600							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAGAACTCCTTTTTCTACATG	0.348													10	25					0	0	0.000442599	0	0
TTN	7273	broad.mit.edu	37	2	179614349	179614349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179614349C>T	uc002unb.2	-	46	13002	c.12778G>A	c.(12778-12780)GAA>AAA	p.E4260K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCAATATTTTCGAATTGACTA	0.373													8	21					0	0	0.00307968	0	0
TTN	7273	broad.mit.edu	37	2	179621438	179621439	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179621438_179621439CC>TT	uc010zfh.1	-	44	10475_10476	c.10251_10252GG>AA	c.(10249-10254)AAGGAG>AAAAAG	p.E3418K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc002unb.2_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGCTCTCCTCCTTTGTGAAAG	0.406													19	19					0	0	6.4e-05	0	0
TTN	7273	broad.mit.edu	37	2	179640734	179640734	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179640734C>T	uc010zfg.1	-	28	6081	c.5857G>A	c.(5857-5859)GAA>AAA	p.E1953K	TTN_uc010zfh.1_Missense_Mutation_p.E1907K|TTN_uc010zfi.1_Missense_Mutation_p.E1907K|TTN_uc010zfj.1_Missense_Mutation_p.E1907K|TTN_uc002unb.2_Missense_Mutation_p.E1953K|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1953							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTCCTGGTTCATGTACGTGA	0.418													52	81					0	0	0.00361006	0	0
TTN	7273	broad.mit.edu	37	2	179641514	179641514	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179641514C>T	uc010zfg.1	-	28	5301	c.5077G>A	c.(5077-5079)GAT>AAT	p.D1693N	TTN_uc010zfh.1_Missense_Mutation_p.D1647N|TTN_uc010zfi.1_Missense_Mutation_p.D1647N|TTN_uc010zfj.1_Missense_Mutation_p.D1647N|TTN_uc002unb.2_Missense_Mutation_p.D1693N|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1693							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCATAGAGATCACCTTCTTCC	0.463													12	28					0	0	0.00185496	0	0
TTN	7273	broad.mit.edu	37	2	179647604	179647604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179647604C>T	uc010zfg.1	-	18	3253	c.3029G>A	c.(3028-3030)AGC>AAC	p.S1010N	TTN_uc010zfh.1_Missense_Mutation_p.S964N|TTN_uc010zfi.1_Missense_Mutation_p.S964N|TTN_uc010zfj.1_Missense_Mutation_p.S964N|TTN_uc002unb.2_Missense_Mutation_p.S1010N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1010							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAATCGCCCGCTGTCTTCCGC	0.498													22	25					0	0	0.00188189	0	0
TTN	7273	broad.mit.edu	37	2	179647612	179647612	+	Silent	SNP	C	T	T	rs147603843		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179647612C>T	uc010zfg.1	-	18	3245	c.3021G>A	c.(3019-3021)GCG>GCA	p.A1007A	TTN_uc010zfh.1_Silent_p.A961A|TTN_uc010zfi.1_Silent_p.A961A|TTN_uc010zfj.1_Silent_p.A961A|TTN_uc002unb.2_Silent_p.A1007A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1007							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGCTGTCTTCCGCAAATGCTT	0.502													22	25					0	0	0.00152264	0	0
TTN	7273	broad.mit.edu	37	2	179648473	179648473	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179648473G>A	uc010zfg.1	-	17	3039	c.2815C>T	c.(2815-2817)CCT>TCT	p.P939S	TTN_uc010zfh.1_Missense_Mutation_p.P893S|TTN_uc010zfi.1_Missense_Mutation_p.P893S|TTN_uc010zfj.1_Missense_Mutation_p.P893S|TTN_uc002unb.2_Missense_Mutation_p.P939S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	939							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGAGTAACAGGAATTTCAACA	0.348													17	72					0	0	0.00121646	0	0
TTN	7273	broad.mit.edu	37	2	179648929	179648929	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179648929G>A	uc010zfg.1	-	16	2867	c.2643C>T	c.(2641-2643)TTC>TTT	p.F881F	TTN_uc010zfh.1_Silent_p.F835F|TTN_uc010zfi.1_Silent_p.F835F|TTN_uc010zfj.1_Silent_p.F835F|TTN_uc002unb.2_Silent_p.F881F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	881							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGCGAAGGGGAACTGTGGCA	0.537													13	52					0	0	0.00185496	0	0
TTN	7273	broad.mit.edu	37	2	179659879	179659879	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:179659879G>A	uc010zfg.1	-	7	1239	c.1015C>T	c.(1015-1017)CCT>TCT	p.P339S	TTN_uc010zfh.1_Missense_Mutation_p.P339S|TTN_uc010zfi.1_Missense_Mutation_p.P339S|TTN_uc010zfj.1_Missense_Mutation_p.P339S|TTN_uc002unb.2_Missense_Mutation_p.P339S|TTN_uc010frg.1_Missense_Mutation_p.P13S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	339							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGCACTTCAGGACCTGTGGCC	0.562													43	52					0	0	0.00285205	0	0
ITGA4	3676	broad.mit.edu	37	2	182376453	182376453	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:182376453G>A	uc002unu.2	+	17	2636	c.1873G>A	c.(1873-1875)GAA>AAA	p.E625K	ITGA4_uc010frj.1_Missense_Mutation_p.E107K	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	625	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	TTGTGCCCATGAAAATTGTTC	0.299													25	42					0	0	0.00127121	0	0
CERKL	375298	broad.mit.edu	37	2	182412558	182412558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:182412558G>A	uc002unx.2	-	10	1329	c.1228C>T	c.(1228-1230)CCC>TCC	p.P410S	CERKL_uc002uny.2_Missense_Mutation_p.P384S|CERKL_uc010zfm.1_Missense_Mutation_p.P366S|CERKL_uc002unz.2_Missense_Mutation_p.P132S|CERKL_uc002uoa.2_Missense_Mutation_p.P315S|CERKL_uc002uob.2_Missense_Mutation_p.P132S|CERKL_uc002uoc.2_Missense_Mutation_p.P271S|CERKL_uc010frk.2_Intron|CERKL_uc002uod.1_Missense_Mutation_p.P179S|CERKL_uc002unw.2_5'UTR	NM_001030311	NP_001025482	Q49MI3	CERKL_HUMAN	ceramide kinase-like isoform b	410					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis	endoplasmic reticulum|endoplasmic reticulum|Golgi apparatus|Golgi apparatus|nucleolus|nucleolus	diacylglycerol kinase activity			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.088)			CCAGATTTGGGAGATCCCTGT	0.398													35	131					0	0	0.00128727	0	0
FAM171B	165215	broad.mit.edu	37	2	187626229	187626229	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:187626229A>T	uc002ups.2	+	8	1272	c.1160A>T	c.(1159-1161)AAA>ATA	p.K387I	FAM171B_uc002upr.1_Missense_Mutation_p.K387I|FAM171B_uc002upt.2_5'Flank	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	387	Cytoplasmic (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						ACTCCACAGAAAAGAGAAAGA	0.333													21	75					0	0	0.00278032	0	0
CALCRL	10203	broad.mit.edu	37	2	188245419	188245419	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:188245419C>T	uc002upv.3	-	6	828	c.280G>A	c.(280-282)GAC>AAC	p.D94N	CALCRL_uc010frt.2_Missense_Mutation_p.D94N	NM_005795	NP_005786	Q16602	CALRL_HUMAN	calcitonin receptor-like precursor	94	Extracellular (Potential).					integral to plasma membrane				lung(3)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(96;0.227)			GGATCAAAGTCCTGAAAGTAA	0.398													21	32					0	0	0.00332997	0	0
TFPI	7035	broad.mit.edu	37	2	188332640	188332640	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:188332640C>T	uc002upx.2	-	7	681	c.648G>A	c.(646-648)TGG>TGA	p.W216*	TFPI_uc002upy.2_Nonsense_Mutation_p.W216*|TFPI_uc002upz.2_Nonsense_Mutation_p.W212*	NM_006287	NP_006278	P10646	TFPI1_HUMAN	tissue factor pathway inhibitor isoform a	216					blood coagulation, extrinsic pathway	extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0554)		Coagulation factor VIIa(DB00036)	GAGTGAGACACCATGAGGGAC	0.393													10	29					0	0	0.000442599	0	0
COL3A1	1281	broad.mit.edu	37	2	189859048	189859048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:189859048G>A	uc002uqj.1	+	18	1400	c.1283G>A	c.(1282-1284)CGA>CAA	p.R428Q	COL3A1_uc010frw.1_RNA	NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	428	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	CCTGGACTGCGAGGTGGTGCA	0.488													19	67					0	0	0.00121646	0	0
COL3A1	1281	broad.mit.edu	37	2	189860485	189860485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:189860485G>A	uc002uqj.1	+	22	1694	c.1577G>A	c.(1576-1578)AGA>AAA	p.R526K		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	526	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GAACCTGGCAGAGATGGCGTC	0.468													4	3					0	0	0.00024832	0	0
WDR75	84128	broad.mit.edu	37	2	190324142	190324142	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:190324142C>T	uc002uql.1	+	8	830	c.770C>T	c.(769-771)TCA>TTA	p.S257L	WDR75_uc002uqm.1_Missense_Mutation_p.S193L|WDR75_uc002uqn.1_Missense_Mutation_p.S35L|WDR75_uc002uqo.1_Missense_Mutation_p.S35L	NM_032168	NP_115544	Q8IWA0	WDR75_HUMAN	WD repeat domain 75	257	WD 4.					nucleolus				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00105)|Epithelial(96;0.0129)|all cancers(119;0.0456)			TTGGCTTTTTCAGTGACAGGT	0.294													22	93					0	0	0.00395357	0	0
ANKAR	150709	broad.mit.edu	37	2	190585403	190585403	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:190585403A>G	uc002uqw.1	+	11	2312	c.2312A>G	c.(2311-2313)AAT>AGT	p.N771S	ANKAR_uc002uqu.2_Intron|ANKAR_uc002uqx.1_RNA	NM_144708	NP_653309	Q7Z5J8	ANKAR_HUMAN	ankyrin and armadillo repeat containing	842	ARM 3.					integral to membrane	binding			ovary(2)|pancreas(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0256)|all cancers(119;0.0744)			GTGCTAGTAAATGTAATGAAC	0.299													56	231					0	0	0.00361006	0	0
DNAH7	56171	broad.mit.edu	37	2	196681528	196681528	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:196681528C>T	uc002utj.3	-	51	9686	c.9585G>A	c.(9583-9585)AAG>AAA	p.K3195K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3195					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TGGTGTCAATCTTTTTCTCTG	0.418													47	57					0	0	0.00361006	0	0
DNAH7	56171	broad.mit.edu	37	2	196741308	196741308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:196741308C>T	uc002utj.3	-	37	6178	c.6077G>A	c.(6076-6078)AGA>AAA	p.R2026K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2026	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCCCTTTCTTCTCTTGTCCAA	0.398													35	44					0	0	0.00128727	0	0
DNAH7	56171	broad.mit.edu	37	2	196788418	196788418	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:196788418C>T	uc002utj.3	-	23	3827	c.3726G>A	c.(3724-3726)CTG>CTA	p.L1242L		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1242	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CATGGACATCCAGTACCACAA	0.408													11	55					0	0	0.00136819	0	0
DNAH7	56171	broad.mit.edu	37	2	196837012	196837012	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:196837012C>T	uc002utj.3	-	16	2113	c.2012G>A	c.(2011-2013)AGG>AAG	p.R671K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	671	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AATGATTTTCCTGTGTTCTTC	0.328													15	90					0	0	0.000566183	0	0
HECW2	57520	broad.mit.edu	37	2	197183280	197183280	+	Silent	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:197183280A>T	uc002utm.1	-	9	2517	c.2334T>A	c.(2332-2334)ACT>ACA	p.T778T	HECW2_uc002utl.1_Silent_p.T422T	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	778	Interaction with TP73.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						TCCTACCTCCAGTAGCGCCCT	0.582													28	49					0	0	0.00178596	0	0
SF3B1	23451	broad.mit.edu	37	2	198270043	198270043	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:198270043G>A	uc002uue.2	-	10	1441	c.1393C>T	c.(1393-1395)CCA>TCA	p.P465S		NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	465	Interaction with PPP1R8.				nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			TTTAAAAATGGAAGATTTCCA	0.338													9	56					0	0	0.000442599	0	0
PLCL1	5334	broad.mit.edu	37	2	198953663	198953664	+	Missense_Mutation	DNP	CG	AT	AT	rs45481595		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:198953663_198953664CG>AT	uc010fsp.2	+	3	3088_3089	c.2797_2798CG>AT	c.(2797-2799)CGG>ATG	p.R933M	PLCL1_uc002uuv.3_Missense_Mutation_p.R854M	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	933					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	TCTGTCATCTCGGCTCATCACC	0.46													9	333					0	0	6.4e-05	0	0
ALS2	57679	broad.mit.edu	37	2	202568857	202568857	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:202568857G>A	uc002uyo.2	-	33	5279	c.4923C>T	c.(4921-4923)TTC>TTT	p.F1641F	ALS2_uc010ftl.2_RNA	NM_020919	NP_065970	Q96Q42	ALS2_HUMAN	alsin isoform 1	1641	VPS9.				cell death|endosome organization|positive regulation of Rac GTPase activity|regulation of endosome size	centrosome|cytosol|early endosome|growth cone|lamellipodium|protein complex|ruffle	protein homodimerization activity|protein serine/threonine kinase activator activity|Rab GTPase binding|Rab guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity			skin(5)|lung(1)|breast(1)	7						TCAAGGTGGTGAACATTATAC	0.368													13	42					0	0	0.00185496	0	0
ZDBF2	57683	broad.mit.edu	37	2	207170308	207170308	+	Silent	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:207170308C>A	uc002vbp.2	+	5	1306	c.1056C>A	c.(1054-1056)GCC>GCA	p.A352A		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	352							nucleic acid binding|zinc ion binding			ovary(3)	3						ACAAGACAGCCTTTTGGGAAC	0.383													10	57					2.80697e-09	7.6768e-09	0.000978159	1	0
ZDBF2	57683	broad.mit.edu	37	2	207173591	207173591	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:207173591T>G	uc002vbp.2	+	5	4589	c.4339T>G	c.(4339-4341)TGT>GGT	p.C1447G		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1447							nucleic acid binding|zinc ion binding			ovary(3)	3						AAATAAGAACTGTGAAGTCTG	0.358													4	30					0	0	0.00024832	0	0
ZDBF2	57683	broad.mit.edu	37	2	207175629	207175629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:207175629C>T	uc002vbp.2	+	5	6627	c.6377C>T	c.(6376-6378)TCT>TTT	p.S2126F		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	2126							nucleic acid binding|zinc ion binding			ovary(3)	3						AGTGACTCTTCTCTGTTTCTG	0.413													26	101					0	0	0.00106085	0	0
DYTN	391475	broad.mit.edu	37	2	207530696	207530696	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:207530696G>A	uc002vbr.1	-	10	1155	c.1038C>T	c.(1036-1038)TCC>TCT	p.S346S		NM_001093730	NP_001087199	A2CJ06	DYTN_HUMAN	dystrotelin	346	Potential.					plasma membrane	zinc ion binding			ovary(1)|central_nervous_system(1)	2				LUSC - Lung squamous cell carcinoma(261;0.082)|Epithelial(149;0.129)|Lung(261;0.153)		TTTCTTCCTGGGAGGTGTATA	0.413													31	38					0	0	0.00178596	0	0
KLF7	8609	broad.mit.edu	37	2	207988671	207988671	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:207988671G>A	uc002vbz.1	-	2	882	c.560C>T	c.(559-561)GCC>GTC	p.A187V	KLF7_uc002vca.1_Intron|KLF7_uc010zix.1_Missense_Mutation_p.A159V	NM_003709	NP_003700	O75840	KLF7_HUMAN	Kruppel-like factor 7 (ubiquitous)	187					regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|zinc ion binding			central_nervous_system(1)|skin(1)	2				LUSC - Lung squamous cell carcinoma(261;0.0856)|Lung(261;0.166)|Epithelial(149;0.173)		AGCCGTCACGGCTGCTGCAGC	0.612													20	78					0	0	0.00152264	0	0
PIKFYVE	200576	broad.mit.edu	37	2	209190707	209190707	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:209190707C>T	uc002vcz.2	+	20	3330	c.3172C>T	c.(3172-3174)CCA>TCA	p.P1058S	PIKFYVE_uc010fun.1_Missense_Mutation_p.P739S|PIKFYVE_uc002vcy.1_Missense_Mutation_p.P1002S	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	1058					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						CTGTATCTCCCCAGTAATCAC	0.408													42	54					0	0	0.00222228	0	0
PIKFYVE	200576	broad.mit.edu	37	2	209217485	209217485	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:209217485C>T	uc002vcz.2	+	39	5981	c.5823C>T	c.(5821-5823)TTC>TTT	p.F1941F		NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	1941	Catalytic.|PIPK.				cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						AAAATCTTTTCTACGGGAGAA	0.393													43	66					0	0	0.00361006	0	0
ERBB4	2066	broad.mit.edu	37	2	212251709	212251709	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:212251709G>A	uc002veg.1	-	27	3448	c.3350C>T	c.(3349-3351)CCC>CTC	p.P1117L	ERBB4_uc002veh.1_Missense_Mutation_p.P1101L|ERBB4_uc010zji.1_Missense_Mutation_p.P1107L|ERBB4_uc010zjj.1_Missense_Mutation_p.P1091L	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	1117	Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		TTGGACATGGGGTGCCACTGG	0.562										TSP Lung(8;0.080)			27	48					0	0	0.001512	0	0
IKZF2	22807	broad.mit.edu	37	2	213872633	213872633	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:213872633G>A	uc002vem.2	-	8	1201	c.1032C>T	c.(1030-1032)ATC>ATT	p.I344I	IKZF2_uc010fuu.2_Silent_p.I199I|IKZF2_uc002vej.2_Silent_p.I291I|IKZF2_uc002vek.2_RNA|IKZF2_uc010fuv.2_Silent_p.I270I|IKZF2_uc002vel.2_Silent_p.I265I|IKZF2_uc010fuw.2_Silent_p.I118I|IKZF2_uc010fux.2_Silent_p.I118I|IKZF2_uc010fuy.2_Silent_p.I272I|IKZF2_uc002ven.2_Silent_p.I318I|IKZF2_uc002vei.2_Silent_p.I122I	NM_016260	NP_057344	Q9UKS7	IKZF2_HUMAN	helios isoform 1	344					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Esophageal squamous(248;0.0559)|Renal(323;0.218)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;2.97e-07)|all cancers(144;1.53e-05)|LUSC - Lung squamous cell carcinoma(224;0.00599)|Lung(261;0.00792)		CCACTTCAGCGATTGTGCTTG	0.478													6	18					0	0	0.00307968	0	0
RUFY4	285180	broad.mit.edu	37	2	218953976	218953976	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:218953976G>A	uc002vgw.2	+	13	2829	c.985G>A	c.(985-987)GAG>AAG	p.E329K	RUFY4_uc002vgy.1_RNA|RUFY4_uc010fvl.1_Missense_Mutation_p.E329K	NM_198483	NP_940885	Q6ZNE9	RUFY4_HUMAN	RUN and FYVE domain containing 4	502	FYVE-type.						metal ion binding			pancreas(1)	1		Renal(207;0.0915)		Epithelial(149;4.11e-06)|all cancers(144;0.000519)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		CCCCATCAGAGAGAAGGACCG	0.358													6	21					0	0	0.00198382	0	0
CXCR1	3577	broad.mit.edu	37	2	219029419	219029419	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:219029419G>A	uc002vhc.2	-	2	635	c.516C>T	c.(514-516)TTC>TTT	p.F172F		NM_000634	NP_000625	P25024	CXCR1_HUMAN	interleukin 8 receptor alpha	172	Helical; Name=4; (Potential).				dendritic cell chemotaxis|inflammatory response	integral to membrane|plasma membrane	interleukin-8 receptor activity			lung(2)	2						GGCGGAAAAGGAAGAAGGGCA	0.517													13	27					0	0	0.00316338	0	0
TTLL4	9654	broad.mit.edu	37	2	219602691	219602691	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:219602691G>A	uc002viy.2	+	3	662	c.292G>A	c.(292-294)GGC>AGC	p.G98S	TTLL4_uc010zkl.1_5'UTR|TTLL4_uc010fvx.2_Missense_Mutation_p.G98S	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	98					protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		TGTCATTGCAGGCCACAGCAG	0.567													34	88					0	0	0.00283554	0	0
CCDC108	255101	broad.mit.edu	37	2	219887933	219887933	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:219887933C>T	uc002vjl.1	-	16	2900	c.2816G>A	c.(2815-2817)AGA>AAA	p.R939K		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	939	MSP.					integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ACTCACAAGTCTCTCGTTGGG	0.597													11	44					0	0	0.000673444	0	0
SPEG	10290	broad.mit.edu	37	2	220348742	220348742	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:220348742C>T	uc010fwg.2	+	30	6557	c.6557C>T	c.(6556-6558)CCC>CTC	p.P2186L		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2186	Pro-rich.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GCCCCCAAACCCAGTACCCCT	0.672													10	47					0	0	0.000673444	0	0
SPEG	10290	broad.mit.edu	37	2	220354402	220354402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:220354402C>T	uc010fwg.2	+	36	8662	c.8662C>T	c.(8662-8664)CCT>TCT	p.P2888S		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2888	Pro-rich.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		AGCCTCCACTCCTCAAGGGGT	0.627													51	154					0	0	0.00361006	0	0
ACCN4	55515	broad.mit.edu	37	2	220397091	220397091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:220397091G>A	uc002vma.2	+	4	1305	c.1291G>A	c.(1291-1293)GAG>AAG	p.E431K	ACCN4_uc010fwi.1_Missense_Mutation_p.E431K|ACCN4_uc010fwj.1_Missense_Mutation_p.E431K|ACCN4_uc002vly.1_3'UTR|ACCN4_uc002vlz.2_Missense_Mutation_p.E431K|ACCN4_uc002vmb.2_Missense_Mutation_p.E85K	NM_182847	NP_878267	Q96FT7	ACCN4_HUMAN	amiloride-sensitive cation channel 4 isoform 2	431	Extracellular (Potential).					integral to plasma membrane	sodium channel activity|sodium ion transmembrane transporter activity			ovary(2)	2		Renal(207;0.0183)		Epithelial(149;5.47e-10)|all cancers(144;9e-08)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.0086)|READ - Rectum adenocarcinoma(5;0.156)		TGAGCTCAGGGAGCCTGAGCT	0.642													30	27					0	0	0.00127121	0	0
STK11IP	114790	broad.mit.edu	37	2	220479232	220479232	+	Missense_Mutation	SNP	C	T	T	rs138069010	by1000genomes	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:220479232C>T	uc002vml.2	+	23	2909	c.2866C>T	c.(2866-2868)CGC>TGC	p.R956C		NM_052902	NP_443134	Q8N1F8	S11IP_HUMAN	LKB1 interacting protein	956					protein localization	cytoplasm	protein kinase binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(149;2.69e-07)|all cancers(144;5.91e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CTTGGAGGCTCGCCAGTTCTT	0.557													19	49					0	0	0.00332997	0	0
EPHA4	2043	broad.mit.edu	37	2	222347194	222347194	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:222347194G>A	uc002vmq.2	-	5	1238	c.1196C>T	c.(1195-1197)TCC>TTC	p.S399F	EPHA4_uc002vmr.2_Missense_Mutation_p.S399F|EPHA4_uc010zlm.1_Missense_Mutation_p.S340F|EPHA4_uc010zln.1_Missense_Mutation_p.S399F	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	399	Extracellular (Potential).|Fibronectin type-III 1.		S -> F (in a metastatic melanoma sample; somatic mutation).			integral to plasma membrane	ATP binding|ephrin receptor activity	p.S399F(1)		lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		GTCAGTGATGGAGACTTTGGT	0.502													152	210					0	0	0.00361006	0	0
SGPP2	130367	broad.mit.edu	37	2	223423285	223423285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:223423285G>A	uc010zlo.1	+	5	868	c.868G>A	c.(868-870)GGA>AGA	p.G290R	SGPP2_uc010zlp.1_Missense_Mutation_p.G162R	NM_152386	NP_689599	Q8IWX5	SGPP2_HUMAN	sphingosine-1-phosphate phosphotase 2	290	Helical; (Potential).				sphingosine metabolic process	endoplasmic reticulum membrane|integral to membrane	dihydrosphingosine-1-phosphate phosphatase activity|sphingosine-1-phosphate phosphatase activity			central_nervous_system(1)|skin(1)	2		Renal(207;0.0376)		Epithelial(121;2.08e-09)|all cancers(144;9.25e-07)|LUSC - Lung squamous cell carcinoma(224;0.011)|Lung(261;0.0143)		AGTGACCATAGGATTCTGGAT	0.502													20	71					0	0	0.00229938	0	0
COL4A4	1286	broad.mit.edu	37	2	227915743	227915743	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:227915743A>G	uc010zlt.1	-	33	3754	c.3100T>C	c.(3100-3102)TCA>CCA	p.S1034P		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1034	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		AGACCAGTTGAGCCTGGAGGG	0.552													20	88					0	0	0.00152264	0	0
WDR69	164781	broad.mit.edu	37	2	228758545	228758545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:228758545C>T	uc002vpn.1	+	5	431	c.352C>T	c.(352-354)CTC>TTC	p.L118F	WDR69_uc010zlw.1_Missense_Mutation_p.L103F|WDR69_uc002vpo.1_RNA	NM_178821	NP_849143	Q8N136	WDR69_HUMAN	WD repeat domain 69	118	WD 1.									breast(1)	1		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;1.22e-10)|all cancers(144;8.11e-08)|Lung(261;0.011)|LUSC - Lung squamous cell carcinoma(224;0.0148)		GACGTGCAAGCTCTGGGACAC	0.453													12	60					0	0	0.00244969	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882168	228882168	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:228882168C>T	uc002vpq.2	-	7	3449	c.3402G>A	c.(3400-3402)GTG>GTA	p.V1134V	SPHKAP_uc002vpp.2_Silent_p.V1134V|SPHKAP_uc010zlx.1_Silent_p.V1134V	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1134						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CCATCTGGTTCACCATGAACC	0.527													10	55					0	0	0.00136819	0	0
SPHKAP	80309	broad.mit.edu	37	2	228884106	228884106	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:228884106G>A	uc002vpq.2	-	7	1511	c.1464C>T	c.(1462-1464)TCC>TCT	p.S488S	SPHKAP_uc002vpp.2_Silent_p.S488S|SPHKAP_uc010zlx.1_Silent_p.S488S	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	488						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GTTGTCTGCTGGAGTTCTCTC	0.532													17	41					0	0	0.00074312	0	0
PID1	55022	broad.mit.edu	37	2	229890776	229890776	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:229890776C>T	uc002vpr.3	-	3	363	c.325G>A	c.(325-327)GGC>AGC	p.G109S	PID1_uc002vps.3_Missense_Mutation_p.G107S|PID1_uc002vpt.3_Missense_Mutation_p.G76S|PID1_uc002vpu.3_Missense_Mutation_p.G27S	NM_001100818	NP_001094288	Q7Z2X4	PCLI1_HUMAN	phosphotyrosine interaction domain containing 1	109	PID.					cytoplasm				breast(3)|skin(1)	4		Renal(207;0.0112)|all_lung(227;0.0191)|Lung NSC(271;0.0851)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.171)		Epithelial(121;3.08e-11)|all cancers(144;2.28e-08)|LUSC - Lung squamous cell carcinoma(224;0.0145)|Lung(261;0.0189)		TCTGTGCAGCCTGACAAAAAC	0.532													24	62					0	0	0.000720815	0	0
FBXO36	130888	broad.mit.edu	37	2	230861576	230861576	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:230861576C>T	uc002vqa.2	+	3	338	c.315C>T	c.(313-315)ATC>ATT	p.I105I	FBXO36_uc002vqb.2_Silent_p.I74I|FBXO36_uc010fxi.1_Silent_p.I105I|FBXO36_uc002vqc.2_RNA	NM_174899	NP_777559	Q8NEA4	FBX36_HUMAN	F-box protein 36	105	F-box.									ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0179)|Lung NSC(271;0.0804)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;7.56e-14)|all cancers(144;7.74e-11)|Lung(119;0.00488)|LUSC - Lung squamous cell carcinoma(224;0.008)		TCCTGACTATCATTTCTTATC	0.348													99	96					0	0	0.00361006	0	0
FBXO36	130888	broad.mit.edu	37	2	230875502	230875502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:230875502G>A	uc002vqa.2	+	4	492	c.469G>A	c.(469-471)GGC>AGC	p.G157S	FBXO36_uc002vqb.2_Missense_Mutation_p.G126S|FBXO36_uc010fxi.1_Intron|FBXO36_uc002vqc.2_RNA	NM_174899	NP_777559	Q8NEA4	FBX36_HUMAN	F-box protein 36	157										ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0179)|Lung NSC(271;0.0804)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;7.56e-14)|all cancers(144;7.74e-11)|Lung(119;0.00488)|LUSC - Lung squamous cell carcinoma(224;0.008)		GGAGGACACAGGCTGGAGACA	0.547													16	39					0	0	0.000566183	0	0
SP140	11262	broad.mit.edu	37	2	231103072	231103072	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:231103072G>A	uc002vql.2	+	3	497	c.382G>A	c.(382-384)GAG>AAG	p.E128K	SP140_uc010zma.1_RNA|SP140_uc002vqj.2_Missense_Mutation_p.E128K|SP140_uc002vqk.2_Missense_Mutation_p.E128K|SP140_uc002vqn.2_Missense_Mutation_p.E128K|SP140_uc002vqm.2_Missense_Mutation_p.E128K|SP140_uc010fxl.2_Missense_Mutation_p.E128K	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	128	HSR.				defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		TGATTTAAACGAGATTTACAG	0.358													24	30					0	0	0.000720815	0	0
SP140	11262	broad.mit.edu	37	2	231150529	231150529	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:231150529G>A	uc002vql.2	+	17	1742	c.1627G>A	c.(1627-1629)GAC>AAC	p.D543N	SP140_uc010zma.1_RNA|SP140_uc002vqn.2_Missense_Mutation_p.D429N|SP140_uc002vqm.2_Missense_Mutation_p.D483N|SP140_uc010fxl.2_Missense_Mutation_p.D516N	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	543					defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		GAATCTGAAAGACCTTTCCAA	0.453													52	48					0	0	0.00361006	0	0
SP140	11262	broad.mit.edu	37	2	231152662	231152662	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:231152662G>A	uc002vql.2	+	18	1816	c.1701G>A	c.(1699-1701)CAG>CAA	p.Q567Q	SP140_uc010zma.1_RNA|SP140_uc002vqn.2_Silent_p.Q453Q|SP140_uc002vqm.2_Silent_p.Q507Q|SP140_uc010fxl.2_Silent_p.Q540Q	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	567					defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		GAGCTGCACAGAAAAGAGTCC	0.393													6	23					0	0	0.00307968	0	0
SP140L	93349	broad.mit.edu	37	2	231222606	231222606	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:231222606C>T	uc010fxm.1	+	3	285	c.194C>T	c.(193-195)TCA>TTA	p.S65L	SP140_uc010zma.1_RNA|SP140L_uc010fxn.1_5'UTR	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	65	HSR.					nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						CTGGAGATATCAAATGCAATA	0.393													127	156					0	0	0.00361006	0	0
SP140L	93349	broad.mit.edu	37	2	231222634	231222634	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:231222634C>T	uc010fxm.1	+	3	313	c.222C>T	c.(220-222)TTC>TTT	p.F74F	SP140_uc010zma.1_RNA|SP140L_uc010fxn.1_5'UTR	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	74	HSR.					nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						CATTTCCATTCCTTGAGGGCC	0.373													56	227					0	0	0.00361006	0	0
SP140L	93349	broad.mit.edu	37	2	231249953	231249953	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:231249953G>A	uc010fxm.1	+	9	809	c.718G>A	c.(718-720)GAT>AAT	p.D240N	SP140L_uc010fxo.1_Missense_Mutation_p.D47N	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	240						nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						CAGCAAAGCCGATGGCCAGCT	0.468													19	52					0	0	0.00332997	0	0
SP140L	93349	broad.mit.edu	37	2	231267534	231267534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:231267534G>A	uc010fxm.1	+	19	1757	c.1666G>A	c.(1666-1668)GGA>AGA	p.G556R		NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	Error:Variant_position_missing_in_Q9H930_after_alignment						nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						TGGCCAAATGGGACTTAGACT	0.378													16	78					0	0	0.00400662	0	0
PSMD1	5707	broad.mit.edu	37	2	231931703	231931703	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:231931703T>A	uc002vrn.1	+	5	519	c.388T>A	c.(388-390)TTG>ATG	p.L130M	PSMD1_uc002vrm.1_Missense_Mutation_p.L130M|PSMD1_uc010fxu.1_Translation_Start_Site	NM_002807	NP_002798	Q99460	PSMD1_HUMAN	proteasome 26S non-ATPase subunit 1	130					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	enzyme regulator activity|protein binding			ovary(1)|skin(1)	2		Ovarian(221;0.000626)|Medulloblastoma(418;0.0109)|Renal(207;0.0112)|Lung NSC(271;0.0538)|all_lung(227;0.0713)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;4e-26)|LUSC - Lung squamous cell carcinoma(224;0.0138)|Lung(119;0.0168)	Bortezomib(DB00188)	TGACCAGAGATTGGAAGGCAT	0.393													11	22					0	0	0.00136819	0	0
ARMC9	80210	broad.mit.edu	37	2	232104718	232104718	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:232104718C>T	uc002vrq.3	+	9	955	c.843C>T	c.(841-843)AGC>AGT	p.S281S	ARMC9_uc002vrp.3_Silent_p.S281S	NM_025139	NP_079415	Q7Z3E5	ARMC9_HUMAN	armadillo repeat containing 9	281							binding			ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0744)|all_hematologic(139;0.0749)|Acute lymphoblastic leukemia(138;0.167)|Medulloblastoma(418;0.184)|Lung NSC(271;0.205)		Epithelial(121;1.43e-10)|LUSC - Lung squamous cell carcinoma(224;0.017)|Lung(119;0.0189)		TGCGGCAGAGCCTGGCGCATA	0.557													11	11					0	0	0.000978159	0	0
ALPPL2	251	broad.mit.edu	37	2	233274158	233274158	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:233274158G>A	uc002vss.3	+	10	1353	c.1300G>A	c.(1300-1302)GGG>AGG	p.G434R		NM_031313	NP_112603	P10696	PPBN_HUMAN	placental-like alkaline phosphatase	434					phosphorylation	anchored to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			skin(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)	Amifostine(DB01143)|Levamisole(DB00848)	GAGCGAGAGCGGTGAGTGCCG	0.662													4	6					0	0	0.00116845	0	0
ECEL1	9427	broad.mit.edu	37	2	233348801	233348802	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:233348801_233348802CC>GT	uc002vsv.2	-	7	1521_1522	c.1316_1317GG>AC	c.(1315-1317)CGG>CAC	p.R439H	ECEL1_uc010fya.1_Missense_Mutation_p.R439H|ECEL1_uc010fyb.1_Missense_Mutation_p.R146H	NM_004826	NP_004817	O95672	ECEL1_HUMAN	endothelin converting enzyme-like 1	439	Lumenal (Potential).				neuropeptide signaling pathway|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity			central_nervous_system(2)	2		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000771)|Lung(119;0.00213)|LUSC - Lung squamous cell carcinoma(224;0.00746)		CCAAGCAGACCCGGGCCAGCTC	0.629													30	61					0	0	6.4e-05	0	0
NGEF	25791	broad.mit.edu	37	2	233835021	233835021	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:233835021T>A	uc002vts.2	-	3	534	c.286A>T	c.(286-288)AAA>TAA	p.K96*		NM_019850	NP_062824	Q8N5V2	NGEF_HUMAN	neuronal guanine nucleotide exchange factor	96	Regulatory region; modulates activity toward RHOA, RAC1 and CDC42 (By similarity).				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|growth cone|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)|skin(1)	7		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.00793)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;8.65e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(119;0.00984)|GBM - Glioblastoma multiforme(43;0.0604)		TTTACAGATTTTCCATTGTCC	0.463													28	66					0	0	0.00178596	0	0
UGT1A10	54575	broad.mit.edu	37	2	234545426	234545426	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:234545426G>A	uc002vur.2	+	1	304	c.258G>A	c.(256-258)CAG>CAA	p.Q86Q	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Silent_p.Q86Q	NM_019075	NP_061948	Q9HAW8	UD110_HUMAN	UDP glycosyltransferase 1 family, polypeptide	86					flavone metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding			ovary(2)|skin(1)	3		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;1.96e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000468)|Lung(119;0.00381)|LUSC - Lung squamous cell carcinoma(224;0.008)		TGGAAGATCAGAACCGGGAAT	0.428													25	91					0	0	0.00127121	0	0
UGT1A3	54659	broad.mit.edu	37	2	234638435	234638435	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:234638435C>T	uc002vuy.2	+	1	663	c.663C>T	c.(661-663)TCC>TCT	p.S221S	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Silent_p.S221S	NM_019093	NP_061966	P35503	UD13_HUMAN	UDP glycosyltransferase 1 family, polypeptide A3	221					flavonoid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;2.4e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000476)|Lung(119;0.00243)|LUSC - Lung squamous cell carcinoma(224;0.00599)		TGGCCCTGTCCTACATTTGCC	0.453													109	139					0	0	0.00361006	0	0
AGAP1	116987	broad.mit.edu	37	2	236957795	236957795	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:236957795C>T	uc002vvs.2	+	16	2579	c.1984C>T	c.(1984-1986)CGA>TGA	p.R662*	AGAP1_uc002vvt.2_Nonsense_Mutation_p.R609*	NM_001037131	NP_001032208	Q9UPQ3	AGAP1_HUMAN	centaurin, gamma 2 isoform 1	662	Arf-GAP.				protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm	ARF GTPase activator activity|GTP binding|zinc ion binding			ovary(2)|skin(1)	3						TTCCCGAGTCCGATCTCTGGA	0.577													26	76					0	0	0.00178596	0	0
IQCA1	79781	broad.mit.edu	37	2	237300694	237300694	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:237300694C>T	uc002vvz.1	-	11	1520	c.1338G>A	c.(1336-1338)CAG>CAA	p.Q446Q	IQCA1_uc002vwb.2_Silent_p.Q453Q|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Silent_p.Q405Q	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	446	Lys-rich.						ATP binding			ovary(1)	1						TTTTAAGTTCCTGTCTCATCA	0.408													35	179					0	0	0.00111076	0	0
CXCR7	57007	broad.mit.edu	37	2	237489786	237489786	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:237489786C>T	uc010fyq.2	+	3	908	c.678C>T	c.(676-678)TCC>TCT	p.S226S	CXCR7_uc002vwd.2_Silent_p.S226S	NM_020311	NP_064707	P25106	CXCR7_HUMAN	chemokine orphan receptor 1	226	Helical; Name=5; (Potential).				interspecies interaction between organisms	integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			large_intestine(1)|central_nervous_system(1)|skin(1)	3		Breast(86;0.000182)|Renal(207;0.00339)|all_hematologic(139;0.0048)|Acute lymphoblastic leukemia(138;0.0775)|Ovarian(221;0.089)|all_lung(227;0.147)|all_neural(83;0.223)		Epithelial(121;8.35e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.09e-11)|Kidney(56;1.11e-07)|KIRC - Kidney renal clear cell carcinoma(57;3.03e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000176)|Lung(119;0.00468)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.118)		TTCCCTTCTCCATTATCGCTG	0.577													29	85					0	0	0.00127121	0	0
COL6A3	1293	broad.mit.edu	37	2	238253147	238253148	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:238253147_238253148CC>TT	uc002vwl.2	-	36	7798_7799	c.7513_7514GG>AA	c.(7513-7515)GGA>AAA	p.G2505K	COL6A3_uc002vwo.2_Missense_Mutation_p.G2299K|COL6A3_uc010znj.1_Missense_Mutation_p.G1898K|COL6A3_uc002vwj.2_5'Flank|COL6A3_uc002vwp.1_Missense_Mutation_p.G326K	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2505	VWFA 11.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CATTAGGAATCCGTTCCTCACA	0.51													67	70					0	0	6.4e-05	0	0
COL6A3	1293	broad.mit.edu	37	2	238272037	238272037	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:238272037G>A	uc002vwl.2	-	14	6207	c.5922C>T	c.(5920-5922)GTC>GTT	p.V1974V	COL6A3_uc002vwo.2_Silent_p.V1768V|COL6A3_uc010znj.1_Silent_p.V1367V	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1974	VWFA 10.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TCAAGGCACGGACTCCTGCAA	0.468													24	45					0	0	0.00278032	0	0
ESPNL	339768	broad.mit.edu	37	2	239025582	239025582	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:239025582C>T	uc002vxq.3	+	5	1004	c.894C>T	c.(892-894)TCC>TCT	p.S298S	ESPNL_uc010fyw.2_Intron	NM_194312	NP_919288	Q6ZVH7	ESPNL_HUMAN	espin-like	298	ANK 9.									pancreas(1)	1		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		TGGACCCCTCCCTGCGGGATG	0.652													16	35					0	0	0.00400662	0	0
ASB1	51665	broad.mit.edu	37	2	239342322	239342322	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:239342322G>A	uc002vyg.2	+	2	263	c.177G>A	c.(175-177)GAG>GAA	p.E59E		NM_001040445	NP_001035535	Q9Y576	ASB1_HUMAN	ankyrin repeat and SOCS box-containing protein	59	ANK 1.				intracellular signal transduction|negative regulation of cytokine biosynthetic process						0		all_epithelial(40;2.65e-14)|Breast(86;7.61e-05)|Renal(207;0.00183)|all_lung(227;0.0283)|Ovarian(221;0.0365)|Lung NSC(271;0.0941)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;2.04e-26)|OV - Ovarian serous cystadenocarcinoma(60;4.5e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;2.88e-05)|Lung(119;0.000383)|LUSC - Lung squamous cell carcinoma(224;0.00644)		TATTGCAAGAGGAGAGCTACC	0.602													13	80					0	0	0.00400662	0	0
CAPN10	11132	broad.mit.edu	37	2	241528788	241528788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:241528788C>T	uc002vzk.1	+	2	354	c.170C>T	c.(169-171)CCA>CTA	p.P57L	CAPN10_uc010zoh.1_Missense_Mutation_p.P57L|CAPN10_uc002vzl.1_Missense_Mutation_p.P57L|CAPN10_uc002vzm.1_Intron|CAPN10_uc002vzn.1_5'UTR|CAPN10_uc002vzo.1_RNA|CAPN10_uc010fzg.1_RNA|CAPN10_uc002vzp.1_RNA|CAPN10_uc002vzq.1_Missense_Mutation_p.P57L	NM_023083	NP_075571	Q9HC96	CAN10_HUMAN	calpain 10 isoform a	57	Calpain catalytic.				actin cytoskeleton reorganization|cellular response to insulin stimulus|positive regulation of apoptosis|positive regulation of glucose import|positive regulation of insulin secretion|positive regulation of intracellular transport|proteolysis	cytosol|plasma membrane	calcium-dependent cysteine-type endopeptidase activity|cytoskeletal protein binding|SNARE binding			ovary(3)|large_intestine(2)|lung(1)	6		all_epithelial(40;1.72e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|all_neural(83;0.0459)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.13e-31)|all cancers(36;3.24e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.82e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.1e-06)|Lung(119;0.00168)|Colorectal(34;0.00495)|LUSC - Lung squamous cell carcinoma(224;0.00813)|COAD - Colon adenocarcinoma(134;0.032)		CGGCTGTTTCCAGATGACCCA	0.577													37	166					0	0	0.00148497	0	0
GPR35	2859	broad.mit.edu	37	2	241569594	241569594	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:241569594C>T	uc002vzs.1	+	1	800	c.225C>T	c.(223-225)TTC>TTT	p.F75F	GPR35_uc010fzh.1_Silent_p.F106F|GPR35_uc010fzi.1_Silent_p.F106F	NM_005301	NP_005292	Q9HC97	GPR35_HUMAN	G protein-coupled receptor 35	75	Helical; Name=2; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			skin(2)|pancreas(1)	3		all_epithelial(40;7.49e-12)|Breast(86;0.000148)|Renal(207;0.00571)|Ovarian(221;0.104)|all_neural(83;0.107)|all_hematologic(139;0.182)|all_lung(227;0.186)|Melanoma(123;0.238)		Epithelial(32;5.29e-32)|all cancers(36;1.38e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.13e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.02e-06)|Lung(119;0.00163)|Colorectal(34;0.00463)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.031)		CCTTGCCCTTCGTGCTGCACT	0.627													32	41					0	0	0.00375469	0	0
AGXT	189	broad.mit.edu	37	2	241808596	241808596	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:241808596G>A	uc002waa.3	+	2	296	c.175G>A	c.(175-177)GAG>AAG	p.E59K	AGXT_uc010zoi.1_Missense_Mutation_p.E59K	NM_000030	NP_000021	P21549	SPYA_HUMAN	alanine-glyoxylate aminotransferase	59					glyoxylate metabolic process|protein targeting to peroxisome	mitochondrial matrix|peroxisomal matrix	alanine-glyoxylate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|serine-pyruvate transaminase activity				0		all_epithelial(40;1.61e-15)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)	Glycine(DB00145)|L-Alanine(DB00160)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	GATCATGGACGAGATCAAGGA	0.617													16	42					0	0	0.000566183	0	0
PASK	23178	broad.mit.edu	37	2	242051780	242051780	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:242051780G>A	uc002wao.1	-	15	3500	c.3408C>T	c.(3406-3408)ATC>ATT	p.I1136I	PASK_uc010zol.1_Silent_p.I950I|PASK_uc010zom.1_Silent_p.I1101I|PASK_uc010fzl.1_Silent_p.I1143I|PASK_uc010zon.1_Silent_p.I917I	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	1136	Protein kinase.				regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		AGTCCTCGGCGATCACGATGT	0.502													24	32					0	0	0.00106085	0	0
PASK	23178	broad.mit.edu	37	2	242080004	242080004	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:242080004G>A	uc002wao.1	-	3	453	c.361C>T	c.(361-363)CCT>TCT	p.P121S	PASK_uc010zol.1_Intron|PASK_uc010zom.1_Missense_Mutation_p.P121S|PASK_uc010fzl.1_Missense_Mutation_p.P121S|PASK_uc010zon.1_Intron|PASK_uc002waq.2_Missense_Mutation_p.P121S	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	121	PAS 1.				regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		GGAAGCAGAGGTGAGGACCAC	0.612													11	42					0	0	0.00185496	0	0
ATG4B	23192	broad.mit.edu	37	2	242610752	242610752	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr2:242610752C>T	uc002wbv.2	+	12	1143	c.1040C>T	c.(1039-1041)CCC>CTC	p.P347L	ATG4B_uc002wbu.2_Missense_Mutation_p.P273L|ATG4B_uc002wbw.2_Missense_Mutation_p.P347L|ATG4B_uc010zox.1_Missense_Mutation_p.P333L|ATG4B_uc010zoy.1_Missense_Mutation_p.P273L|ATG4B_uc010fzp.2_Missense_Mutation_p.P347L|ATG4B_uc010zoz.1_Missense_Mutation_p.P273L|ATG4B_uc002wby.2_Missense_Mutation_p.P100L	NM_013325	NP_037457	Q9Y4P1	ATG4B_HUMAN	APG4 autophagy 4 homolog B isoform a	347					autophagic vacuole assembly|protein transport|proteolysis	cytoplasm	cysteine-type peptidase activity|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;2.44e-33)|all cancers(36;5.71e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.75e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0848)		GGTGCCCTGCCCATGTTTGAG	0.627													6	19					0	0	0.00198382	0	0
DEFB132	400830	broad.mit.edu	37	20	238422	238422	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:238422G>A	uc002wdb.2	+	1	46	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_207469	NP_997352	Q7Z7B7	DB132_HUMAN	beta-defensin 32 precursor	1					defense response to bacterium	extracellular region					0						CTTCAGCCATGAAGTTCCTGC	0.522													6	13					0	0	0.00307968	0	0
SIRPD	128646	broad.mit.edu	37	20	1517841	1517841	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:1517841G>A	uc002wfi.2	-	3	581	c.537C>T	c.(535-537)TTC>TTT	p.F179F		NM_178460	NP_848555	Q9H106	SIRPD_HUMAN	signal-regulatory protein delta precursor	179						extracellular region				ovary(1)|kidney(1)|skin(1)	3						AGGGTTGGACGAAATAGTTTG	0.617													20	58					0	0	0.000958276	0	0
SIRPB1	10326	broad.mit.edu	37	20	1551667	1551667	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:1551667C>T	uc010gai.2	-	4	967	c.868G>A	c.(868-870)GGA>AGA	p.G290R	SIRPB1_uc002wfk.3_Intron	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	290	Ig-like C1-type 2.|Extracellular (Potential).				cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						GACACATTTCCATTCTCCAAC	0.552													15	53					0	0	0.00074312	0	0
SIRPG	55423	broad.mit.edu	37	20	1617025	1617025	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:1617025C>T	uc002wfm.1	-	3	622	c.557G>A	c.(556-558)GGG>GAG	p.G186E	SIRPG_uc002wfn.1_Missense_Mutation_p.G186E|SIRPG_uc002wfo.1_Intron|uc002wfp.1_Intron	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	186	Extracellular (Potential).|Ig-like C1-type 1.				blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						GAGCTCATTCCCATTTTTGAA	0.577													26	59					0	0	0.00106085	0	0
PDYN	5173	broad.mit.edu	37	20	1961157	1961157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:1961157C>T	uc010gaj.2	-	3	819	c.577G>A	c.(577-579)GGG>AGG	p.G193R	uc002wfu.1_Intron|PDYN_uc002wfv.2_Missense_Mutation_p.G193R|PDYN_uc010zpt.1_Missense_Mutation_p.G38R	NM_024411	NP_077722	P01213	PDYN_HUMAN	beta-neoendorphin-dynorphin preproprotein	193					cell death|neuropeptide signaling pathway|synaptic transmission	extracellular region|plasma membrane	opioid peptide activity			upper_aerodigestive_tract(1)|ovary(1)	2						TCCCCGTCCCCCTCCCCAGCC	0.587													60	24					0	0	0.00361006	0	0
SMOX	54498	broad.mit.edu	37	20	4167936	4167936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:4167936C>T	uc002wkm.1	+	7	1751	c.1550C>T	c.(1549-1551)TCC>TTC	p.S517F	SMOX_uc002wkk.1_Missense_Mutation_p.S494F|SMOX_uc002wkl.1_Missense_Mutation_p.S464F|SMOX_uc002wkn.1_Missense_Mutation_p.S152F|SMOX_uc002wkp.2_Missense_Mutation_p.S547F|SMOX_uc010zqo.1_Missense_Mutation_p.S441F|SMOX_uc002wko.1_Missense_Mutation_p.S517F	NM_175839	NP_787033	Q9NWM0	SMOX_HUMAN	spermine oxidase isoform 1	517					polyamine biosynthetic process|xenobiotic metabolic process	cytosol|nucleus	polyamine oxidase activity			breast(1)	1					Spermine(DB00127)	GTGCTGTTTTCCGGTGAGGCC	0.647													8	22					0	0	0.000978159	0	0
CHGB	1114	broad.mit.edu	37	20	5903676	5903676	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:5903676G>A	uc002wmg.2	+	4	1192	c.886G>A	c.(886-888)GGA>AGA	p.G296R	CHGB_uc010zqz.1_5'UTR	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	296						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						GTCCTCTCAAGGAGGGAGTCT	0.582													3	10					0	0	6.4e-05	0	0
PLCB4	5332	broad.mit.edu	37	20	9438082	9438082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:9438082G>A	uc002wnf.2	+	32	3118	c.2982G>A	c.(2980-2982)ATG>ATA	p.M994I	PLCB4_uc010gbw.1_Missense_Mutation_p.M994I|PLCB4_uc010gbx.2_Missense_Mutation_p.M1006I|PLCB4_uc002wne.2_Missense_Mutation_p.M994I|PLCB4_uc002wnh.2_Missense_Mutation_p.M841I	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	994					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						GTCTCGAAATGAAAAAAGAAA	0.368													22	20					0	0	0.00395357	0	0
C20orf103	24141	broad.mit.edu	37	20	9496969	9496969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:9496969G>A	uc002wni.1	+	4	665	c.436G>A	c.(436-438)GAC>AAC	p.D146N	C20orf103_uc010zrc.1_Missense_Mutation_p.D102N	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	146	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			GTTTGTCTACGACTCCTCGGA	0.582													53	22					0	0	0.00361006	0	0
PAK7	57144	broad.mit.edu	37	20	9538276	9538276	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:9538276G>A	uc002wnl.2	-	8	2267	c.1722C>T	c.(1720-1722)ATC>ATT	p.I574I	PAK7_uc002wnk.2_Silent_p.I574I|PAK7_uc002wnj.2_Silent_p.I574I|PAK7_uc010gby.1_Silent_p.I574I	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	574	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			TTGTCAGGAGGATGGAGTCAC	0.453													15	14					0	0	0.00316338	0	0
PAK7	57144	broad.mit.edu	37	20	9561263	9561263	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:9561263C>T	uc002wnl.2	-	5	1064	c.519G>A	c.(517-519)ATG>ATA	p.M173I	PAK7_uc002wnk.2_Missense_Mutation_p.M173I|PAK7_uc002wnj.2_Missense_Mutation_p.M173I|PAK7_uc010gby.1_Missense_Mutation_p.M173I	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	173	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			GCTTCATTTTCATTACGTGCC	0.463													43	83					0	0	0.00321405	0	0
SPTLC3	55304	broad.mit.edu	37	20	13098255	13098255	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:13098255C>T	uc002wod.1	+	8	1324	c.1035C>T	c.(1033-1035)GGC>GGT	p.G345G		NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	345					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	GGGCCGTGGGCCCAACCGGCC	0.502													61	35					0	0	0.00361006	0	0
SLC24A3	57419	broad.mit.edu	37	20	19566125	19566125	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:19566125C>T	uc002wrl.2	+	6	746	c.549C>T	c.(547-549)ATC>ATT	p.I183I		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	183	Alpha-1.|Helical; (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						TTGGCACCATCGTGGGCTCAG	0.542													54	149					0	0	0.00361006	0	0
CD93	22918	broad.mit.edu	37	20	23065861	23065861	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:23065861C>T	uc002wsv.2	-	1	1117	c.969G>A	c.(967-969)GGG>GGA	p.G323G		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	323	EGF-like 2.|Extracellular (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					TGTAGTTTTTCCCATGGGGTC	0.637													12	26					0	0	0.00136819	0	0
GGTLC1	92086	broad.mit.edu	37	20	23965943	23965943	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:23965943G>A	uc002wts.2	-	6	721	c.588C>T	c.(586-588)TTC>TTT	p.F196F	GGTLC1_uc002wtu.2_Silent_p.F196F	NM_178312	NP_842564	Q9BX51	GGTL1_HUMAN	gamma-glutamyltransferase light chain 1	196							gamma-glutamyltransferase activity			ovary(1)	1						CCACAGCAATGAAGGTGGACG	0.632													36	87					0	0	0.00128727	0	0
GGTLC1	92086	broad.mit.edu	37	20	23966376	23966376	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:23966376C>T	uc002wts.2	-	5	592	c.459G>A	c.(457-459)TGG>TGA	p.W153*	GGTLC1_uc002wtu.2_Nonsense_Mutation_p.W153*	NM_178312	NP_842564	Q9BX51	GGTL1_HUMAN	gamma-glutamyltransferase light chain 1	153							gamma-glutamyltransferase activity			ovary(1)	1						CCTCCACGGCCCACTTCACGT	0.612													29	73					0	0	0.00283554	0	0
FOXS1	2307	broad.mit.edu	37	20	30433274	30433274	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:30433274G>A	uc002wwt.1	-	1	147	c.72C>T	c.(70-72)ATC>ATT	p.I24I		NM_004118	NP_004109	O43638	FOXS1_HUMAN	forkhead box S1	24	Fork-head.				anti-apoptosis|artery morphogenesis|blood vessel remodeling|camera-type eye development|cardiac muscle cell proliferation|collagen fibril organization|embryonic heart tube development|insulin receptor signaling pathway|lymphangiogenesis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|neural crest cell fate commitment|neuromuscular process controlling balance|Notch signaling pathway|ossification|paraxial mesodermal cell fate commitment|patterning of blood vessels|positive regulation of multicellular organism growth|positive regulation of transcription from RNA polymerase II promoter|regulation of blood vessel size|regulation of organ growth|somitogenesis|vascular endothelial growth factor receptor signaling pathway|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	transcription factor complex	chromatin DNA binding|DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)	1						CAATAAGGGCGATGTAGCTGT	0.657													31	85					0	0	0.00375469	0	0
XKR7	343702	broad.mit.edu	37	20	30585110	30585110	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:30585110G>A	uc002wxe.2	+	3	1764	c.1590G>A	c.(1588-1590)AAG>AAA	p.K530K		NM_001011718	NP_001011718	Q5GH72	XKR7_HUMAN	XK, Kell blood group complex subunit-related	530						integral to membrane				ovary(1)|breast(1)|skin(1)	3			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			TGCCTCGCAAGAAGTACCCGG	0.637													84	29					0	0	0.00361006	0	0
DNMT3B	1789	broad.mit.edu	37	20	31394046	31394046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:31394046C>T	uc002wyc.2	+	22	2654	c.2333C>T	c.(2332-2334)TCG>TTG	p.S778L	DNMT3B_uc002wyd.2_Missense_Mutation_p.S758L|DNMT3B_uc002wye.2_Intron|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_Intron|DNMT3B_uc010ztz.1_Intron|DNMT3B_uc010zua.1_Intron|DNMT3B_uc002wyf.2_Missense_Mutation_p.S770L|DNMT3B_uc002wyg.2_Intron|DNMT3B_uc010geg.2_Intron|DNMT3B_uc010geh.2_RNA	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	778					negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						ACCACCAAGTCGAACTCGATC	0.448													13	47					0	0	0.00185496	0	0
C20orf185	359710	broad.mit.edu	37	20	31660574	31660574	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:31660574C>T	uc002wym.1	+	14	1376	c.1376C>T	c.(1375-1377)TCC>TTC	p.S459F		NM_182658	NP_872599	P59826	LPLC3_HUMAN	antimicrobial peptide RYA3 precursor	459					innate immune response	cytoplasm|extracellular region	lipid binding|protein binding			ovary(4)	4						ATCAATTTTTCCAATTCAGTT	0.463													19	69					0	0	0.00332997	0	0
C20orf71	128861	broad.mit.edu	37	20	31812911	31812911	+	Missense_Mutation	SNP	G	A	A	rs150349800	byFrequency	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:31812911G>A	uc002wyr.2	+	4	602	c.394G>A	c.(394-396)GAT>AAT	p.D132N	C20orf71_uc002wys.2_Missense_Mutation_p.D96N	NM_178466	NP_848561	Q9BQP9	SPLC3_HUMAN	short long palate, lung and nasal epithelium	132						extracellular region	lipid binding			ovary(1)|skin(1)	2						CAGGTCCTTCGATAACAACAT	0.383													23	126					0	0	0.00332997	0	0
PLUNC	51297	broad.mit.edu	37	20	31825584	31825584	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:31825584G>A	uc002wyv.2	+	2	137	c.67G>A	c.(67-69)GGC>AGC	p.G23S	PLUNC_uc002wyt.3_Missense_Mutation_p.G23S|PLUNC_uc002wyu.3_Missense_Mutation_p.G23S	NM_130852	NP_570913	Q9NP55	PLUNC_HUMAN	palate, lung and nasal epithelium associated	23					innate immune response	extracellular region	lipid binding				0						CCAGTTTGGAGGCCTGCCCGT	0.547													17	64					0	0	0.00074312	0	0
PROCR	10544	broad.mit.edu	37	20	33764091	33764091	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:33764091C>T	uc002xbt.2	+	3	627	c.443C>T	c.(442-444)GCC>GTC	p.A148V	EDEM2_uc010zuv.1_Intron|PROCR_uc010zuw.1_Missense_Mutation_p.A185V	NM_006404	NP_006395	Q9UNN8	EPCR_HUMAN	endothelial protein C receptor precursor	148	Extracellular (Potential).				antigen processing and presentation|blood coagulation|immune response	integral to plasma membrane|MHC class I protein complex	receptor activity				0			BRCA - Breast invasive adenocarcinoma(18;0.0152)		Drotrecogin alfa(DB00055)	CCGGAGAGAGCCTTGTGGCAG	0.592													64	36					0	0	0.00361006	0	0
FAM83C	128876	broad.mit.edu	37	20	33879595	33879595	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:33879595C>T	uc010zux.1	-	1	631	c.513G>A	c.(511-513)ACG>ACA	p.T171T	FAM83C_uc002xcb.1_5'UTR	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	171										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			aGGCCCTTACCGTGTGGGCCT	0.338													29	81					0	0	0.0024448	0	0
RPN2	6185	broad.mit.edu	37	20	35827600	35827600	+	Missense_Mutation	SNP	C	T	T	rs147803642		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:35827600C>T	uc002xgp.2	+	4	755	c.451C>T	c.(451-453)CGT>TGT	p.R151C	RPN2_uc002xgo.3_Missense_Mutation_p.R151C|RPN2_uc010gfw.2_Intron|RPN2_uc002xgq.2_Missense_Mutation_p.R119C	NM_002951	NP_002942	P04844	RPN2_HUMAN	ribophorin II isoform 1 precursor	151	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|nucleus|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				CCTTACTGCTCGTCTCAGCAA	0.512													12	40					0	0	0.00185496	0	0
FAM83D	81610	broad.mit.edu	37	20	37580853	37580853	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:37580853C>T	uc002xjg.2	+	4	1579	c.1538C>T	c.(1537-1539)TCC>TTC	p.S513F		NM_030919	NP_112181	Q9H4H8	FA83D_HUMAN	hypothetical protein LOC81610	483	Ser-rich.				cell division|mitosis	cytoplasm|spindle pole				ovary(3)	3		Myeloproliferative disorder(115;0.00878)				TCTGTGTCTTCCCAAGGCTCT	0.512													16	56					0	0	0.00074312	0	0
EMILIN3	90187	broad.mit.edu	37	20	39990818	39990818	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:39990818C>T	uc002xjy.1	-	4	1615	c.1391G>A	c.(1390-1392)GGC>GAC	p.G464D		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	464						proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				CCCAAAGCCGCCCACTCCCCA	0.647													20	95					0	0	0.00229938	0	0
PTPRT	11122	broad.mit.edu	37	20	40709567	40709567	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:40709567C>T	uc002xkg.2	-	31	4462	c.4278G>A	c.(4276-4278)CAG>CAA	p.Q1426Q	PTPRT_uc010ggj.2_Silent_p.Q1445Q|PTPRT_uc010ggi.2_Silent_p.Q629Q	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1426	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CAAATTTATACTGTTCCTgag	0.303													19	57					0	0	0.000958276	0	0
PTPRT	11122	broad.mit.edu	37	20	40739032	40739032	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:40739032G>A	uc002xkg.2	-	23	3379	c.3195C>T	c.(3193-3195)TTC>TTT	p.F1065F	PTPRT_uc010ggj.2_Silent_p.F1084F|PTPRT_uc010ggi.2_Silent_p.F268F	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1065	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CCTGGCGGACGAAGCCCAGAA	0.532													34	15					0	0	0.00428921	0	0
HNF4A	3172	broad.mit.edu	37	20	43057087	43057087	+	Silent	SNP	C	T	T	rs141448616		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:43057087C>T	uc002xma.2	+	9	1331	c.1242C>T	c.(1240-1242)AAC>AAT	p.N414N	HNF4A_uc002xlu.2_Silent_p.N392N|HNF4A_uc002xlv.2_Silent_p.N392N|HNF4A_uc002xlz.2_Silent_p.N414N|HNF4A_uc010ggq.2_Silent_p.N407N	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	414					blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			ACCTCAGCAACGGACAGATGT	0.582													65	239					0	0	0.00361006	0	0
HNF4A	3172	broad.mit.edu	37	20	43058294	43058294	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:43058294G>A	uc002xma.2	+	10	1503	c.1414G>A	c.(1414-1416)GAA>AAA	p.E472K	HNF4A_uc002xlu.2_Missense_Mutation_p.E440K|HNF4A_uc002xlv.2_Missense_Mutation_p.E450K|HNF4A_uc002xlz.2_Missense_Mutation_p.E462K|HNF4A_uc010ggq.2_Missense_Mutation_p.E465K	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	472					blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			CACCAAGCAGGAAGTTATCTA	0.632													77	213					0	0	0.00361006	0	0
KCNK15	60598	broad.mit.edu	37	20	43379280	43379280	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:43379280C>A	uc002xmr.2	+	2	858	c.794C>A	c.(793-795)CCC>CAC	p.P265H		NM_022358	NP_071753	Q9H427	KCNKF_HUMAN	potassium family, subfamily K, member 15	265	Cytoplasmic (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity				0		Myeloproliferative disorder(115;0.0122)				Agcccgcgccccccgggggcg	0.632													12	5					4.3838e-07	1.19719e-06	0.00185496	1	0
MATN4	8785	broad.mit.edu	37	20	43929849	43929849	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:43929849C>T	uc002xnn.2	-	5	969	c.782G>A	c.(781-783)AGC>AAC	p.S261N	MATN4_uc002xno.2_Missense_Mutation_p.S220N|MATN4_uc002xnp.2_Intron|MATN4_uc010zwr.1_Missense_Mutation_p.S209N|MATN4_uc002xnr.1_Missense_Mutation_p.S261N	NM_003833	NP_003824	O95460	MATN4_HUMAN	matrilin 4 isoform 1 precursor	302	EGF-like 3.					extracellular region	protein binding				0		Myeloproliferative disorder(115;0.0122)				GTTCCCAAAGCTGCAGTAGTC	0.602											OREG0025977	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	37	81					0	0	0.00128727	0	0
WFDC8	90199	broad.mit.edu	37	20	44184469	44184469	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:44184469G>A	uc002xow.2	-	4	395	c.316C>T	c.(316-318)CAT>TAT	p.H106Y	WFDC8_uc002xox.2_Missense_Mutation_p.H106Y	NM_181510	NP_852611	Q8IUA0	WFDC8_HUMAN	WAP four-disulfide core domain 8 precursor	106	BPTI/Kunitz inhibitor.					extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				TGTGCCTCATGATTACAGTTT	0.453													22	65					0	0	0.00229938	0	0
NCOA5	57727	broad.mit.edu	37	20	44691023	44691023	+	Silent	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:44691023A>C	uc002xrd.2	-	7	2184	c.1656T>G	c.(1654-1656)CCT>CCG	p.P552P	NCOA5_uc002xrc.2_3'UTR|NCOA5_uc002xre.2_Silent_p.P552P	NM_020967	NP_066018	Q9HCD5	NCOA5_HUMAN	nuclear receptor coactivator 5	552	Transcription activation.				regulation of transcription, DNA-dependent|transcription, DNA-dependent|translation	nucleus	aminoacyl-tRNA ligase activity|ATP binding			central_nervous_system(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)				GGGAGAGAGCAGGGCCACTCT	0.527													12	34					0	0	0.00185496	0	0
EYA2	2139	broad.mit.edu	37	20	45618738	45618739	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:45618738_45618739GG>AA	uc002xsm.2	+	2	463_464	c.89_90GG>AA	c.(88-90)TGG>TAA	p.W30*	EYA2_uc010ghp.2_Nonsense_Mutation_p.W30*|EYA2_uc002xsn.2_Nonsense_Mutation_p.W35*|EYA2_uc002xso.2_Nonsense_Mutation_p.W30*|EYA2_uc002xsp.2_Nonsense_Mutation_p.W30*|EYA2_uc002xsq.2_Nonsense_Mutation_p.W30*	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	30					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				GCTGCTGTGTGGACTCTGAGTG	0.495													16	39					0	0	6.4e-05	0	0
SULF2	55959	broad.mit.edu	37	20	46313184	46313184	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:46313184G>A	uc002xto.2	-	6	1209	c.879C>T	c.(877-879)TCC>TCT	p.S293S	SULF2_uc002xtr.2_Silent_p.S293S|SULF2_uc002xtq.2_Silent_p.S293S	NM_018837	NP_061325	Q8IWU5	SULF2_HUMAN	sulfatase 2 isoform a precursor	293					bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						CCGTCTCCATGGAGTCGTCCA	0.637													22	8					0	0	0.000878237	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47605858	47605858	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:47605858A>T	uc002xtx.3	+	19	2722	c.2570A>T	c.(2569-2571)AAC>ATC	p.N857I	ARFGEF2_uc010zyf.1_Missense_Mutation_p.N150I	NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	857					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			CTGCTGTACAACTTAGAGATG	0.418													19	52					0	0	0.000958276	0	0
DDX27	55661	broad.mit.edu	37	20	47845304	47845304	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:47845304C>T	uc002xuh.2	+	8	913	c.852C>T	c.(850-852)CCC>CCT	p.P284P		NM_017895	NP_060365	Q96GQ7	DDX27_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	284	Helicase ATP-binding.					nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			kidney(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.000899)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			TTTATAAACCCCGCCAGGCTC	0.577													43	140					0	0	0.00321405	0	0
PTPN1	5770	broad.mit.edu	37	20	49195842	49195842	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:49195842C>T	uc002xvl.2	+	7	1014	c.840C>T	c.(838-840)TTC>TTT	p.F280F	PTPN1_uc010zys.1_Silent_p.F207F	NM_002827	NP_002818	P18031	PTN1_HUMAN	protein tyrosine phosphatase, non-receptor type	280					blood coagulation|interferon-gamma-mediated signaling pathway|negative regulation of insulin receptor signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytosol|endoplasmic reticulum membrane	protein tyrosine phosphatase activity|zinc ion binding				0		Lung NSC(126;0.163)			Clodronate(DB00720)|Tiludronate(DB01133)	GTGCCAAATTCATCATGGGGG	0.483													62	206					0	0	0.00361006	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870663	51870663	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:51870663G>A	uc002xwo.2	+	2	1622	c.666G>A	c.(664-666)GCG>GCA	p.A222A		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	222	C2H2-type 1.				multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.A222T(1)		ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			AGTGCAGCGCGGCCTATGACA	0.557													13	46					0	0	0.00185496	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870703	51870703	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:51870703G>A	uc002xwo.2	+	2	1662	c.706G>A	c.(706-708)GAA>AAA	p.E236K		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	236	C2H2-type 1.				multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			GCACATGAATGAAACGGGCCA	0.532													11	43					0	0	0.000978159	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871325	51871325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:51871325C>T	uc002xwo.2	+	2	2284	c.1328C>T	c.(1327-1329)CCC>CTC	p.P443L		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	443					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			TCTCTGGCTCCCAAGCCATCC	0.478													41	140					0	0	0.00285205	0	0
RBM38	55544	broad.mit.edu	37	20	55982684	55982684	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:55982684C>T	uc010zzj.1	+	4	677	c.502C>T	c.(502-504)CCC>TCC	p.P168S	RBM38_uc010zzk.1_3'UTR	NM_017495	NP_059965	Q9H0Z9	RBM38_HUMAN	RNA-binding region containing protein 1 isoform	168					3'-UTR-mediated mRNA stabilization|cell cycle|cell cycle arrest|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mRNA processing|negative regulation of cell proliferation|regulation of RNA splicing|RNA splicing	cytosol|cytosol|nucleus|nucleus	mRNA 3'-UTR binding|mRNA binding|nucleotide binding|RNA binding				0	Lung NSC(12;0.00242)|all_lung(29;0.00767)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;1.55e-12)|Epithelial(14;9.49e-09)|all cancers(14;5.01e-08)			GCTGTCCTCGCCCTACATTGA	0.682													12	36					0	0	0.00185496	0	0
PCK1	5105	broad.mit.edu	37	20	56137137	56137137	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:56137137C>G	uc002xyn.3	+	3	398	c.235C>G	c.(235-237)CTC>GTC	p.L79V	PCK1_uc010zzm.1_Intron	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	79					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			CTGGTTGGCTCTCACTGACCC	0.557													33	16					0	0	0.00283554	0	0
ZBP1	81030	broad.mit.edu	37	20	56189956	56189956	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:56189956C>T	uc002xyo.2	-	4	770	c.489G>A	c.(487-489)ACG>ACA	p.T163T	ZBP1_uc010gjm.2_Silent_p.T163T|ZBP1_uc002xyp.2_Silent_p.T88T|ZBP1_uc010zzn.1_Silent_p.T163T	NM_030776	NP_110403	Q9H171	ZBP1_HUMAN	Z-DNA binding protein 1 isoform a	163	DRADA 2.					cytoplasm|nucleus	double-stranded RNA adenosine deaminase activity|left-handed Z-DNA binding|RNA binding			ovary(2)	2	Lung NSC(12;0.000545)|all_lung(29;0.00195)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;7.87e-13)|Epithelial(14;3.26e-09)|all cancers(14;3.62e-08)			GGCGGTAAATCGTCCATGCTT	0.552													111	46					0	0	0.00361006	0	0
GNAS	2778	broad.mit.edu	37	20	57429142	57429142	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:57429142C>T	uc002xzw.2	+	1	1107	c.822C>T	c.(820-822)CCC>CCT	p.P274P	GNAS_uc002xzt.2_Intron|GNAS_uc002xzu.3_Intron|GNAS_uc010gjq.2_Intron|GNAS_uc002xzv.2_RNA	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			ACGCGCCTCCCCTCTGGGTCC	0.677			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			12	20					0	0	0.00400662	0	0
ZNF831	128611	broad.mit.edu	37	20	57766491	57766491	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:57766491G>A	uc002yan.2	+	1	417	c.417G>A	c.(415-417)CGG>CGA	p.R139R		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	139						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GCAAGGTGCGGAATGCGGGCA	0.672													57	30					0	0	0.00361006	0	0
ZNF831	128611	broad.mit.edu	37	20	57829200	57829200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:57829200G>A	uc002yan.2	+	5	4436	c.4436G>A	c.(4435-4437)GGA>GAA	p.G1479E		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1479						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GGGTCCAAAGGAACTTTTCCC	0.493													39	87					0	0	0.00285205	0	0
PHACTR3	116154	broad.mit.edu	37	20	58349480	58349480	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:58349480C>T	uc002yau.2	+	7	1576	c.1109C>T	c.(1108-1110)TCT>TTT	p.S370F	PHACTR3_uc002yat.2_Missense_Mutation_p.S367F|PHACTR3_uc010zzw.1_Missense_Mutation_p.S329F|PHACTR3_uc002yav.2_Missense_Mutation_p.S329F|PHACTR3_uc002yaw.2_Missense_Mutation_p.S329F|PHACTR3_uc002yax.2_Missense_Mutation_p.S259F	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1	370						nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			ATCATAAATTCTGAACTCAAA	0.493													43	115					0	0	0.00285205	0	0
LAMA5	3911	broad.mit.edu	37	20	60892524	60892525	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:60892524_60892525CC>TT	uc002ycq.2	-	55	7454_7455	c.7387_7388GG>AA	c.(7387-7389)GGG>AAG	p.G2463K		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	2463	Domain II and I.|Potential.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGTCCGAGCCCCATCCAGGCTG	0.678													6	30					0	0	6.4e-05	0	0
PPDPF	79144	broad.mit.edu	37	20	62152912	62152912	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:62152912T>G	uc002yff.2	+	3	243	c.103T>G	c.(103-105)TGC>GGC	p.C35G		NM_024299	NP_077275	Q9H3Y8	PPDPF_HUMAN	pancreatic progenitor cell differentiation and	35					cell differentiation|multicellular organismal development						0						CAGTACCGAGTGCCCCGGGGA	0.687													12	49					0	0	0.00136819	0	0
PTK6	5753	broad.mit.edu	37	20	62164928	62164928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:62164928C>T	uc002yfg.2	-	4	686	c.646G>A	c.(646-648)GTG>ATG	p.V216M	PTK6_uc011aay.1_Missense_Mutation_p.V115M|PTK6_uc011aaz.1_5'Flank	NM_005975	NP_005966	Q13882	PTK6_HUMAN	PTK6 protein tyrosine kinase 6	216	Protein kinase.					cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(1)|kidney(1)	2	all_cancers(38;2.51e-11)		Epithelial(9;1.5e-08)|all cancers(9;8.67e-08)|BRCA - Breast invasive adenocarcinoma(10;6.43e-06)			TTAATGGCCACCTGGACCCGG	0.657													20	59					0	0	0.00121646	0	0
SLC2A4RG	56731	broad.mit.edu	37	20	62374129	62374129	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:62374129C>T	uc002ygq.2	+	7	1093	c.1038C>T	c.(1036-1038)ATC>ATT	p.I346I	SLC2A4RG_uc002ygr.2_Silent_p.I241I|SLC2A4RG_uc011abj.1_Silent_p.I241I|SLC2A4RG_uc002ygs.2_Silent_p.I148I|SLC2A4RG_uc002ygt.2_Missense_Mutation_p.R65W	NM_020062	NP_064446	Q9NR83	S2A4R_HUMAN	SLC2A4 regulator	346						cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_cancers(38;1.13e-12)|all_epithelial(29;2.64e-14)|Lung NSC(23;4.79e-10)|all_lung(23;1.7e-09)					CCTCCAGGATCGGAGTCACCC	0.716													5	8					0	0	0.000602214	0	0
ZNF512B	57473	broad.mit.edu	37	20	62599259	62599259	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr20:62599259G>A	uc002yhl.1	-	2	99	c.45C>T	c.(43-45)TCC>TCT	p.S15S		NM_020713	NP_065764	Q96KM6	Z512B_HUMAN	zinc finger protein 512B	15					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(38;2.14e-11)|all_epithelial(29;3.41e-13)|Lung NSC(23;3.41e-09)|all_lung(23;1.06e-08)					CACTCTTGCTGGACCCCGGGA	0.597													47	45					0	0	0.00361006	0	0
TPTE	7179	broad.mit.edu	37	21	10920164	10920164	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr21:10920164C>T	uc002yip.1	-	19	1458	c.1090G>A	c.(1090-1092)GAA>AAA	p.E364K	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.E346K|TPTE_uc002yir.1_Missense_Mutation_p.E326K|TPTE_uc010gkv.1_Missense_Mutation_p.E226K	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	364	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TACAGGCTTTCCTACAAAAAA	0.378													8	53					0	0	0.00307968	0	0
ADAMTS5	11096	broad.mit.edu	37	21	28338312	28338312	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr21:28338312C>T	uc002ymg.2	-	1	1128	c.399G>A	c.(397-399)CGG>CGA	p.R133R		NM_007038	NP_008969	Q9UNA0	ATS5_HUMAN	ADAM metallopeptidase with thrombospondin type 1	133					proteolysis	proteinaceous extracellular matrix	integrin binding|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						CCACTGTGCCCCGATAGAAGC	0.657													13	21					0	0	0.00136819	0	0
RNF160	26046	broad.mit.edu	37	21	30308901	30308901	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr21:30308901G>T	uc002ymr.2	-	26	4752	c.4739C>A	c.(4738-4740)CCA>CAA	p.P1580Q		NM_015565	NP_056380	O94822	LTN1_HUMAN	zinc finger protein 294	1534							ligase activity|zinc ion binding				0						GTCCTTATTTGGGACCTCAAC	0.393													10	315					0.000673444	0.00183186	0.000673444	1	0
GRIK1	2897	broad.mit.edu	37	21	30927556	30927556	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr21:30927556C>T	uc002yno.1	-	16	2888	c.2424G>A	c.(2422-2424)ATG>ATA	p.M808I	GRIK1_uc002ynn.2_Missense_Mutation_p.M793I|GRIK1_uc011acs.1_Missense_Mutation_p.M808I|GRIK1_uc011act.1_Missense_Mutation_p.M669I	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	808	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	TCTCTTTCATCATATGCAGCT	0.458													37	87					0	0	0.00128727	0	0
KRTAP13-1	140258	broad.mit.edu	37	21	31768610	31768610	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr21:31768610C>T	uc002yoa.2	+	1	219	c.206C>T	c.(205-207)TCC>TTC	p.S69F		NM_181599	NP_853630	Q8IUC0	KR131_HUMAN	keratin associated protein 13-1	69	3.|5 X 10 AA approximate repeats.					intermediate filament				ovary(1)	1						TGCCAGACATCCTATGTGGAG	0.597													41	19					0	0	0.00222228	0	0
SYNJ1	8867	broad.mit.edu	37	21	34053931	34053931	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr21:34053931C>T	uc002yqh.2	-	11	1345	c.1345G>A	c.(1345-1347)GGT>AGT	p.G449S	SYNJ1_uc011ads.1_Missense_Mutation_p.G410S|SYNJ1_uc002yqf.2_Missense_Mutation_p.G410S|SYNJ1_uc002yqg.2_Missense_Mutation_p.G410S|SYNJ1_uc002yqi.2_Missense_Mutation_p.G449S	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	410	SAC.						inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						TCAGCTAAACCAAGAGCTTCC	0.343													15	52					0	0	0.00316338	0	0
SON	6651	broad.mit.edu	37	21	34927484	34927484	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr21:34927484C>T	uc002yse.1	+	3	5996	c.5947C>T	c.(5947-5949)CGC>TGC	p.R1983C	SON_uc002ysb.1_Missense_Mutation_p.R1983C|SON_uc002ysc.2_Missense_Mutation_p.R1983C|SON_uc002ysd.2_Missense_Mutation_p.R974C|SON_uc002ysf.1_Intron|SON_uc002ysg.2_Missense_Mutation_p.R974C	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	1983	2 X 19 AA repeats of P-S-R-R-R-R-S-R-S-V- V-R-R-R-S-F-S-I-S.|2-6.|7 X 7 AA repeats of P-S-R-R-S-R-[TS].				anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						cacccccagccgccggagccg	0.154													11	21					0	0	0.000673444	0	0
CHAF1B	8208	broad.mit.edu	37	21	37785496	37785496	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr21:37785496C>T	uc002yvj.2	+	12	1514	c.1376C>T	c.(1375-1377)CCC>CTC	p.P459L		NM_005441	NP_005432	Q13112	CAF1B_HUMAN	chromatin assembly factor 1 subunit B	459					cell cycle|DNA repair|DNA replication|DNA replication-dependent nucleosome assembly|protein complex assembly|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|cytoplasm	chromatin binding|histone binding|unfolded protein binding			ovary(1)|skin(1)	2						GTCAAAAGCCCCTTGCCGGGG	0.637													10	28					0	0	0.000442599	0	0
KCNJ6	3763	broad.mit.edu	37	21	38997754	38997754	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr21:38997754T>G	uc011aej.1	-	4	1032	c.979A>C	c.(979-981)ACC>CCC	p.T327P	KCNJ6_uc002ywo.2_Missense_Mutation_p.T327P	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	327	Cytoplasmic (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	ATCTCACTGGTGATGTAGGAG	0.517													10	42					0	0	0.000673444	0	0
BRWD1	54014	broad.mit.edu	37	21	40571405	40571405	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr21:40571405A>G	uc002yxk.1	-	40	5076	c.4937T>C	c.(4936-4938)GTA>GCA	p.V1646A	BRWD1_uc010goc.1_Missense_Mutation_p.V289A|BRWD1_uc002yxl.2_Missense_Mutation_p.V1646A	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	1646					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				ATTCTCTTCTACATCACTCAT	0.408											OREG0003861	type=REGULATORY REGION|Gene=BRWD1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	20	71					0	0	0.00121646	0	0
DSCAM	1826	broad.mit.edu	37	21	41516632	41516632	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr21:41516632C>T	uc002yyq.1	-	17	3497	c.3045G>A	c.(3043-3045)GGG>GGA	p.G1015G	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1015	Fibronectin type-III 2.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CACGGATAATCCCATTTTGCA	0.468													12	53					0	0	0.000978159	0	0
MX2	4600	broad.mit.edu	37	21	42767678	42767678	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr21:42767678G>A	uc002yzf.1	+	7	1140	c.1036G>A	c.(1036-1038)GAA>AAA	p.E346K	MX2_uc011aer.1_RNA|MX2_uc002yzg.1_Missense_Mutation_p.E69K	NM_002463	NP_002454	P20592	MX2_HUMAN	myxovirus resistance protein 2	346					response to virus|type I interferon-mediated signaling pathway	cytoplasm|nucleus	GTP binding|GTPase activity			ovary(2)	2		Prostate(19;1.57e-07)|all_epithelial(19;0.0222)				AACCAAGAAAGAAATTACATT	0.488													8	47					0	0	0.00136819	0	0
TMPRSS2	7113	broad.mit.edu	37	21	42851186	42851186	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr21:42851186C>T	uc002yzj.2	-	7	730	c.596G>A	c.(595-597)GGA>GAA	p.G199E	TMPRSS2_uc010gor.2_Missense_Mutation_p.G236E|TMPRSS2_uc010gos.1_Missense_Mutation_p.G199E	NM_005656	NP_005647	O15393	TMPS2_HUMAN	transmembrane protease, serine 2 isoform 2	199	Extracellular (Potential).|SRCR.				proteolysis	cytoplasm|extracellular region|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity		TMPRSS2/ERG(2499)|TMPRSS2/ETV1(24)	prostate(2523)|central_nervous_system(1)	2524		Prostate(19;4.48e-07)|all_epithelial(19;0.031)				ATCCACTATTCCTTGGCTAGA	0.368			T	ERG|ETV1|ETV4|ETV5	prostate 								35	86					0	0	0.00111076	0	0
RIPK4	54101	broad.mit.edu	37	21	43164098	43164098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr21:43164098G>A	uc002yzn.1	-	7	1187	c.1139C>T	c.(1138-1140)GCC>GTC	p.A380V		NM_020639	NP_065690	P57078	RIPK4_HUMAN	ankyrin repeat domain 3	380						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|skin(1)	7						GGAAGAGAAGGCGGAGTCCAC	0.647													20	41					0	0	0.00121646	0	0
ABCG1	9619	broad.mit.edu	37	21	43702436	43702436	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr21:43702436C>T	uc002zaq.2	+	6	747	c.641C>T	c.(640-642)ACC>ATC	p.T214I	ABCG1_uc002zan.2_Missense_Mutation_p.T216I|ABCG1_uc002zam.2_Missense_Mutation_p.T192I|ABCG1_uc002zao.2_Missense_Mutation_p.T211I|ABCG1_uc002zap.2_Missense_Mutation_p.T214I|ABCG1_uc002zar.2_Missense_Mutation_p.T225I|ABCG1_uc011aev.1_Missense_Mutation_p.T225I	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	214	Cytoplasmic (Potential).|ABC transporter.				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	AACACGCGGACCGGGAGCCTG	0.612													42	3					0	0	0.00321405	0	0
SIK1	150094	broad.mit.edu	37	21	44837465	44837465	+	Missense_Mutation	SNP	C	T	T	rs34614061		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr21:44837465C>T	uc002zdf.2	-	13	2061	c.1934G>A	c.(1933-1935)CGG>CAG	p.R645Q		NM_173354	NP_775490	P57059	SIK1_HUMAN	salt-inducible kinase 1	645					anoikis|cell cycle|cell differentiation|intracellular protein kinase cascade|multicellular organismal development|regulation of cell differentiation|regulation of mitotic cell cycle	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(2)|testis(2)|ovary(1)|central_nervous_system(1)|skin(1)	7						CCAGCCCTCCCGGCTGCCGGC	0.751													7	22					0	0	0.00198382	0	0
ITGB2	3689	broad.mit.edu	37	21	46313378	46313378	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr21:46313378C>T	uc002zgd.2	-	9	1209	c.1165G>A	c.(1165-1167)GGA>AGA	p.G389R	ITGB2_uc002zge.2_Missense_Mutation_p.G389R|ITGB2_uc002zgf.3_Missense_Mutation_p.G389R|ITGB2_uc011afl.1_Missense_Mutation_p.G311R|ITGB2_uc010gpw.2_Missense_Mutation_p.G332R|ITGB2_uc002zgg.2_Missense_Mutation_p.G389R	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	389	Extracellular (Potential).				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	TGCGTCACTCCATTGCTGCAG	0.602											OREG0026255	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	82					0	0	0.00428921	0	0
PCNT	5116	broad.mit.edu	37	21	47819662	47819662	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr21:47819662C>T	uc002zji.3	+	25	4850	c.4743C>T	c.(4741-4743)CTC>CTT	p.L1581L	PCNT_uc002zjj.2_Silent_p.L1463L	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	1581	Potential.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					TGGCCCAGCTCCAGGAAGAAG	0.473													38	112					0	0	0.00428921	0	0
PCNT	5116	broad.mit.edu	37	21	47831639	47831640	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr21:47831639_47831640GG>AA	uc002zji.3	+	28	5759_5760	c.5652_5653GG>AA	c.(5650-5655)AAGGCG>AAAACG	p.A1885T	PCNT_uc002zjj.2_Missense_Mutation_p.A1767T	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	1885	Potential.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					ACCAGCGGAAGGCGGCCCACTC	0.663													10	40					0	0	6.4e-05	0	0
psiTPTE22	387590	broad.mit.edu	37	22	17119484	17119484	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:17119484C>T	uc002zls.1	+	2		c.321C>T			psiTPTE22_uc002zlr.2_RNA|psiTPTE22_uc002zlt.2_RNA					Homo sapiens cDNA FLJ10437 fis, clone NT2RP1000581.												0						TTGGAGTTTTCCTGGTCTTAC	0.313													19	102					0	0	0.00121646	0	0
IL17RA	23765	broad.mit.edu	37	22	17583051	17583051	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:17583051C>T	uc002zly.2	+	7	754	c.621C>T	c.(619-621)ATC>ATT	p.I207I	IL17RA_uc010gqt.2_Silent_p.I207I	NM_014339	NP_055154	Q96F46	I17RA_HUMAN	interleukin 17A receptor precursor	207	Extracellular (Potential).				fibroblast activation|positive regulation of interleukin-23 production	integral to plasma membrane	interleukin-17 receptor activity			skin(2)	2		all_epithelial(15;0.0181)|Lung NSC(13;0.109)|all_lung(157;0.132)		Colorectal(9;0.241)		ACCCCAACATCACCGTGGAGA	0.577													17	123					0	0	0.00074312	0	0
CECR2	27443	broad.mit.edu	37	22	18021603	18021603	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:18021603C>T	uc010gqw.1	+	14	2020	c.1894C>T	c.(1894-1896)CCG>TCG	p.P632S	CECR2_uc010gqv.1_Missense_Mutation_p.P491S|CECR2_uc002zml.2_Missense_Mutation_p.P491S	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	674					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		CTCTGGAGTCCCGGAGCCACA	0.597													8	93					0	0	0.00307968	0	0
PRODH	5625	broad.mit.edu	37	22	18905843	18905843	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:18905843G>A	uc010grl.2	-	11	1427	c.1413C>T	c.(1411-1413)AAC>AAT	p.N471N	PRODH_uc002zoj.3_Silent_p.N361N|PRODH_uc002zol.3_Silent_p.N361N|PRODH_uc002zok.3_Silent_p.N471N	NM_016335	NP_057419	O43272	PROD_HUMAN	proline dehydrogenase 1	471					glutamate biosynthetic process|induction of apoptosis by oxidative stress|proline catabolic process	mitochondrial inner membrane|mitochondrial matrix	proline dehydrogenase activity			breast(1)	1					L-Proline(DB00172)	GGTACATGGCGTTGGTGGCCT	0.647													56	134					0	0	0.00361006	0	0
ZDHHC8	29801	broad.mit.edu	37	22	20126823	20126823	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:20126823G>A	uc002zrq.2	+	2	317	c.211G>A	c.(211-213)GGT>AGT	p.G71S	ZDHHC8_uc002zrr.1_Missense_Mutation_p.G71S|ZDHHC8_uc010gsa.2_5'Flank	NM_013373	NP_037505	Q9ULC8	ZDHC8_HUMAN	zinc finger, DHHC domain containing 8	71	Helical; (Potential).					cytoplasmic vesicle membrane|integral to membrane	acyltransferase activity|zinc ion binding	p.G71C(1)		ovary(1)|central_nervous_system(1)	2	Colorectal(54;0.0993)					CATGGACCCTGGTGTTTTCCC	0.557													48	150					0	0	0.00361006	0	0
PI4KAP1	728233	broad.mit.edu	37	22	20386754	20386754	+	RNA	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:20386754G>A	uc010gse.1	-	11		c.1648C>T			PI4KAP1_uc010gsf.1_RNA|PI4KAP1_uc010gsg.1_Intron|PI4KAP1_uc010gsh.1_RNA|PI4KAP1_uc002zsc.3_Intron|PI4KAP1_uc011ahn.1_Intron					Homo sapiens cDNA FLJ11279 fis, clone PLACE1009444, highly similar to PHOSPHATIDYLINOSITOL 4-KINASE ALPHA (EC 2.7.1.67).												0						TTGAGGAGTGGAAAAGGACTC	0.562													8	34					0	0	0.000274275	0	0
Unknown	0	broad.mit.edu	37	22	21563091	21563091	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:21563091G>A	uc011aic.1	-	3	318	c.60C>T	c.(58-60)ATC>ATT	p.I20I						SubName: Full=Putative uncharacterized protein GGT2;																		TGTCTGTGGTGATCTGCGTGC	0.647													15	45					0	0	0.000566183	0	0
MAPK1	5594	broad.mit.edu	37	22	22153384	22153384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:22153384G>A	uc002zvn.2	-	4	766	c.526C>T	c.(526-528)CCA>TCA	p.P176S	MAPK1_uc002zvo.2_Missense_Mutation_p.P176S|MAPK1_uc010gtk.1_Missense_Mutation_p.P176S	NM_002745	NP_002736	P28482	MK01_HUMAN	mitogen-activated protein kinase 1	176	Protein kinase.				activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle|epidermal growth factor receptor signaling pathway|ERK1 and ERK2 cascade|induction of apoptosis|innate immune response|insulin receptor signaling pathway|interspecies interaction between organisms|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|Ras protein signal transduction|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription, DNA-dependent	cytosol|nucleoplasm	ATP binding|DNA binding|MAP kinase activity|phosphatase binding|RNA polymerase II carboxy-terminal domain kinase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3	Colorectal(54;0.105)	all_lung(157;3.89e-05)		READ - Rectum adenocarcinoma(21;0.0689)	Arsenic trioxide(DB01169)	TCATGGTCTGGATCTGCAACA	0.413													13	36					0	0	0.00185496	0	0
LOC96610	96610	broad.mit.edu	37	22	22749647	22749647	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:22749647C>T	uc011aim.1	+	49		c.5644C>T								Parts of antibodies, mostly variable regions.												0						CAAACTGGTTCCAGCAGAAAC	0.567													9	38					0	0	0.000274275	0	0
SLC2A11	66035	broad.mit.edu	37	22	24219284	24219284	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:24219284C>T	uc002zyn.3	+	5	561	c.462C>T	c.(460-462)CTC>CTT	p.L154L	SLC2A11_uc002zyl.1_Silent_p.L161L|SLC2A11_uc002zym.3_Silent_p.L161L|SLC2A11_uc002zyo.3_RNA|SLC2A11_uc011ajc.1_Silent_p.L161L|SLC2A11_uc011ajd.1_Silent_p.L148L|SLC2A11_uc002zyp.3_Silent_p.L157L	NM_001024938	NP_001020109	Q9BYW1	GTR11_HUMAN	glucose transporter protein 10 isoform c	154	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sugar transmembrane transporter activity			ovary(1)	1						CTAAGGAGCTCCGAGGAGCTG	0.617													65	19					0	0	0.00361006	0	0
SUSD2	56241	broad.mit.edu	37	22	24581879	24581879	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:24581879T>C	uc002zzn.1	+	8	1365	c.1321T>C	c.(1321-1323)TAC>CAC	p.Y441H		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	441	Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CTGCCGCAACTACCGGCCCCC	0.657													13	7					0	0	0.00244969	0	0
GGT5	2687	broad.mit.edu	37	22	24616028	24616028	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:24616028G>A	uc002zzo.3	-	12	2088	c.1671C>T	c.(1669-1671)TTC>TTT	p.F557F	GGT5_uc002zzp.3_Silent_p.F558F|GGT5_uc002zzr.3_Silent_p.F525F|GGT5_uc002zzq.3_3'UTR|GGT5_uc011ajm.1_Silent_p.F481F	NM_004121	NP_004112	P36269	GGT5_HUMAN	gamma-glutamyltransferase 5 isoform b	557	Extracellular (Potential).				glutathione biosynthetic process|hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	integral to membrane|plasma membrane	acyltransferase activity|gamma-glutamyltransferase activity			ovary(2)|skin(1)	3						CCACGTTCAGGAAGAAGGGCC	0.632													44	11					0	0	0.00361006	0	0
SGSM1	129049	broad.mit.edu	37	22	25270412	25270412	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:25270412C>T	uc003abg.2	+	13	1479	c.1322C>T	c.(1321-1323)TCC>TTC	p.S441F	SGSM1_uc003abh.2_Missense_Mutation_p.S441F|SGSM1_uc010guu.1_Intron|SGSM1_uc003abj.2_Intron|SGSM1_uc003abi.1_Intron	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	441						Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						AGCACTTCCTCCGTCTCTGTG	0.607													6	47					0	0	0.00198382	0	0
SGSM1	129049	broad.mit.edu	37	22	25294507	25294507	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:25294507C>T	uc003abg.2	+	20	2913	c.2756C>T	c.(2755-2757)TCC>TTC	p.S919F	SGSM1_uc003abh.2_Missense_Mutation_p.S858F|SGSM1_uc010guu.1_Missense_Mutation_p.S864F|SGSM1_uc003abj.2_Missense_Mutation_p.S803F|SGSM1_uc003abi.1_Missense_Mutation_p.S839F	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	919	Rab-GAP TBC.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						CCTGTGTCTTCCAGCGGCGTC	0.557													126	59					0	0	0.00361006	0	0
MYO18B	84700	broad.mit.edu	37	22	26270358	26270358	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:26270358C>T	uc003abz.1	+	23	4307	c.4057C>T	c.(4057-4059)CGC>TGC	p.R1353C	MYO18B_uc003aca.1_Missense_Mutation_p.R1234C|MYO18B_uc010guy.1_Missense_Mutation_p.R1235C|MYO18B_uc010guz.1_Missense_Mutation_p.R1234C|MYO18B_uc011aka.1_Missense_Mutation_p.R507C|MYO18B_uc011akb.1_Missense_Mutation_p.R866C	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1353	IQ.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CTTTCTGTCTCGCCAGGAATT	0.547													16	63					0	0	0.00316338	0	0
MYO18B	84700	broad.mit.edu	37	22	26422532	26422532	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:26422532C>T	uc003abz.1	+	43	6842	c.6592C>T	c.(6592-6594)CGC>TGC	p.R2198C	MYO18B_uc003aca.1_Missense_Mutation_p.R2079C|MYO18B_uc010guy.1_Missense_Mutation_p.R2080C|MYO18B_uc010guz.1_Missense_Mutation_p.R2078C|MYO18B_uc011aka.1_Missense_Mutation_p.R1352C|MYO18B_uc011akb.1_Missense_Mutation_p.R1711C|MYO18B_uc010gva.1_Missense_Mutation_p.R181C|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2198						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CCACTTTGTCCGCCGGCAAAA	0.567													17	135					0	0	0.000958276	0	0
SEZ6L	23544	broad.mit.edu	37	22	26693009	26693009	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:26693009G>A	uc003acb.2	+	4	1281	c.1125G>A	c.(1123-1125)CAG>CAA	p.Q375Q	SEZ6L_uc003acc.2_Silent_p.Q375Q|SEZ6L_uc011akc.1_Silent_p.Q375Q|SEZ6L_uc003acd.2_Silent_p.Q375Q|SEZ6L_uc011akd.1_Silent_p.Q375Q|SEZ6L_uc003ace.2_Silent_p.Q375Q|SEZ6L_uc003acf.1_Silent_p.Q148Q|SEZ6L_uc010gvc.1_Silent_p.Q148Q	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	375	CUB 1.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GGACCTTCCAGGACGACGGCC	0.582													9	51					0	0	0.000673444	0	0
ASPHD2	57168	broad.mit.edu	37	22	26830175	26830175	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:26830175C>T	uc003acg.2	+	2	991	c.594C>T	c.(592-594)ATC>ATT	p.I198I		NM_020437	NP_065170	Q6ICH7	ASPH2_HUMAN	aspartate beta-hydroxylase domain containing 2	198	Lumenal (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity			ovary(1)	1						TCCAGACCATCCTGTGTGAGT	0.552													22	62					0	0	0.00395357	0	0
ASCC2	84164	broad.mit.edu	37	22	30200727	30200727	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:30200727G>A	uc003agr.2	-	13	1358	c.1253C>T	c.(1252-1254)TCG>TTG	p.S418L	ASCC2_uc003ags.2_RNA|ASCC2_uc003agt.2_Missense_Mutation_p.S418L|ASCC2_uc011akr.1_Missense_Mutation_p.S342L	NM_032204	NP_115580	Q9H1I8	ASCC2_HUMAN	activating signal cointegrator 1 complex subunit	418					regulation of transcription, DNA-dependent|transcription, DNA-dependent						0			OV - Ovarian serous cystadenocarcinoma(5;0.000103)|Epithelial(10;0.0169)|all cancers(5;0.0259)			CTCAATCACCGATGGGTCTTT	0.582													84	588					0	0	0.00361006	0	0
MTMR3	8897	broad.mit.edu	37	22	30374500	30374501	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:30374500_30374501CG>AT	uc003agv.3	+	4	401_402	c.73_74CG>AT	c.(73-75)CGG>ATG	p.R25M	MTMR3_uc003agu.3_Missense_Mutation_p.R25M|MTMR3_uc003agw.3_Missense_Mutation_p.R25M	NM_021090	NP_066576	Q13615	MTMR3_HUMAN	myotubularin-related protein 3 isoform c	25					phosphatidylinositol dephosphorylation	cytoplasm|membrane|membrane fraction|nucleus	metal ion binding|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			breast(3)|ovary(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(5;0.00204)|Epithelial(10;0.06)|all cancers(5;0.107)			GCAGCTGATCCGGGAGGATGAG	0.386													7	284					0	0	6.4e-05	0	0
TBC1D10A	83874	broad.mit.edu	37	22	30688741	30688741	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:30688741G>A	uc011akt.1	-	11	1174	c.1150C>T	c.(1150-1152)CCG>TCG	p.P384S	GATSL3_uc003ahf.2_Intron|GATSL3_uc003ahg.2_Intron|GATSL3_uc003ahh.2_Intron|GATSL3_uc010gvq.2_Intron|GATSL3_uc003ahi.2_Intron|TBC1D10A_uc003ahj.3_Missense_Mutation_p.P296S|TBC1D10A_uc010gvu.2_Missense_Mutation_p.P391S|TBC1D10A_uc003ahk.3_Missense_Mutation_p.P384S	NM_031937	NP_114143	Q9BXI6	TB10A_HUMAN	TBC1 domain family, member 10A	384						intracellular|microvillus	guanyl-nucleotide exchange factor activity|PDZ domain binding|Rab GTPase activator activity			ovary(1)	1						AGCCTGGGCGGGGAGCGGCAC	0.657													54	35					0	0	0.00361006	0	0
SF3A1	10291	broad.mit.edu	37	22	30733846	30733846	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:30733846G>A	uc003ahl.2	-	12	1916	c.1784C>T	c.(1783-1785)CCC>CTC	p.P595L		NM_005877	NP_005868	Q15459	SF3A1_HUMAN	splicing factor 3a, subunit 1, 120kDa isoform 1	595					nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nucleoplasm|U2-type spliceosomal complex	protein binding|RNA binding			ovary(3)|large_intestine(1)|pancreas(1)	5						GGGCATGACGGGTACTGCGGA	0.597													56	52					0	0	0.00361006	0	0
CCDC157	550631	broad.mit.edu	37	22	30770064	30770064	+	Silent	SNP	C	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:30770064C>G	uc011aku.1	+	9	2316	c.1656C>G	c.(1654-1656)ACC>ACG	p.T552T	CCDC157_uc011akv.1_Silent_p.T552T	NM_001017437	NP_001017437	Q569K6	CC157_HUMAN	coiled-coil domain containing 157	552										central_nervous_system(1)	1						ACAGGCCCACCGAGACCCAGA	0.667													18	8					0	0	0.000566183	0	0
SEC14L3	266629	broad.mit.edu	37	22	30866032	30866032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:30866032G>A	uc003ahy.2	-	4	297	c.208C>T	c.(208-210)CAT>TAT	p.H70Y	SEC14L3_uc003ahz.2_5'UTR|SEC14L3_uc003aia.2_Missense_Mutation_p.H11Y|SEC14L3_uc003aib.2_Missense_Mutation_p.H11Y	NM_174975	NP_777635	Q9UDX4	S14L3_HUMAN	SEC14-like 3	70						integral to membrane|intracellular	lipid binding|transporter activity			ovary(3)|pancreas(1)|skin(1)	5					Vitamin E(DB00163)	TCAAGGATATGGTCAATATCC	0.537													155	156					0	0	0.00361006	0	0
OSBP2	23762	broad.mit.edu	37	22	31286766	31286766	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:31286766G>A	uc003aiy.1	+	8	1779	c.1675G>A	c.(1675-1677)GAG>AAG	p.E559K	OSBP2_uc011ala.1_Missense_Mutation_p.E393K|OSBP2_uc010gwc.1_Missense_Mutation_p.E386K|OSBP2_uc011alb.1_Missense_Mutation_p.E510K|OSBP2_uc003aiz.1_Missense_Mutation_p.E558K|OSBP2_uc003aja.1_Missense_Mutation_p.E192K|OSBP2_uc011alc.1_Missense_Mutation_p.E301K|OSBP2_uc003ajb.2_Missense_Mutation_p.E104K|OSBP2_uc011ald.1_Missense_Mutation_p.E103K|OSBP2_uc010gwd.1_Missense_Mutation_p.E104K	NM_030758	NP_110385	Q969R2	OSBP2_HUMAN	oxysterol binding protein 2 isoform a	559					lipid transport	membrane	lipid binding			breast(1)|skin(1)	2						AGAGGACCTGGAGTACCACCA	0.622											OREG0026467	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	70					0	0	0.000978159	0	0
OSBP2	23762	broad.mit.edu	37	22	31286918	31286918	+	Silent	SNP	G	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:31286918G>C	uc003aiy.1	+	8	1931	c.1827G>C	c.(1825-1827)CTG>CTC	p.L609L	OSBP2_uc011ala.1_Silent_p.L443L|OSBP2_uc010gwc.1_Silent_p.L436L|OSBP2_uc011alb.1_Silent_p.L560L|OSBP2_uc003aiz.1_Silent_p.L608L|OSBP2_uc003aja.1_Silent_p.L242L|OSBP2_uc011alc.1_Silent_p.L351L|OSBP2_uc003ajb.2_Silent_p.L154L|OSBP2_uc011ald.1_Silent_p.L153L|OSBP2_uc010gwd.1_Silent_p.L154L	NM_030758	NP_110385	Q969R2	OSBP2_HUMAN	oxysterol binding protein 2 isoform a	609					lipid transport	membrane	lipid binding			breast(1)|skin(1)	2						CCTTCGAGCTGGACCGCCTCG	0.657											OREG0026467	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	120					0	0	0.000673444	0	0
PLA2G3	50487	broad.mit.edu	37	22	31531921	31531921	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:31531921A>C	uc003aka.2	-	7	1447	c.1318T>G	c.(1318-1320)TGT>GGT	p.C440G		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	440					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						TCTCTGGAACAGCTGTAAGGA	0.602													9	75					0	0	0.000442599	0	0
PLA2G3	50487	broad.mit.edu	37	22	31536039	31536039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:31536039C>T	uc003aka.2	-	1	431	c.302G>A	c.(301-303)GGA>GAA	p.G101E		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	101					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						CAGCTCGGGTCCGGGGGTGTG	0.632													62	11					0	0	0.00361006	0	0
SFI1	9814	broad.mit.edu	37	22	32009473	32009473	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:32009473T>C	uc003ale.2	+	26	3092	c.2699T>C	c.(2698-2700)ATG>ACG	p.M900T	SFI1_uc003alf.2_Missense_Mutation_p.M869T|SFI1_uc003alg.2_Missense_Mutation_p.M818T|SFI1_uc011alp.1_Missense_Mutation_p.M806T|SFI1_uc011alq.1_Missense_Mutation_p.M845T|SFI1_uc003alh.2_RNA|SFI1_uc010gwi.2_RNA|SFI1_uc003ali.2_5'Flank|SFI1_uc003alj.2_5'Flank	NM_001007467	NP_001007468	A8K8P3	SFI1_HUMAN	spindle assembly associated Sfi1 homolog isoform	900					G2/M transition of mitotic cell cycle	centriole|cytosol				central_nervous_system(1)	1						GCAGCCAGCATGAAGGCCTCC	0.692													5	25					0	0	0.00307968	0	0
RFPL2	10739	broad.mit.edu	37	22	32588960	32588960	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:32588960G>A	uc003amg.3	-	4	1421	c.485C>T	c.(484-486)TCC>TTC	p.S162F	RFPL2_uc003ame.3_Missense_Mutation_p.S101F|RFPL2_uc003amf.3_Missense_Mutation_p.S72F|RFPL2_uc003amh.3_Missense_Mutation_p.S72F	NM_001098527	NP_001091997	O75678	RFPL2_HUMAN	ret finger protein-like 2 isoform 2	162							zinc ion binding			skin(1)	1						CTTGATGTGGGAAGCCAGCCT	0.532													38	159					0	0	0.00111076	0	0
SLC5A4	6527	broad.mit.edu	37	22	32631072	32631072	+	Missense_Mutation	SNP	C	T	T	rs140177779		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:32631072C>T	uc003ami.2	-	8	675	c.673G>A	c.(673-675)GAA>AAA	p.E225K		NM_014227	NP_055042	Q9NY91	SC5A4_HUMAN	solute carrier family 5 (low affinity glucose	225	Helical; (Potential).				carbohydrate transport|sodium ion transport	integral to membrane	symporter activity				0						CCTCCAACTTCGTTAAATGCT	0.428													83	43					0	0	0.00361006	0	0
SYN3	8224	broad.mit.edu	37	22	33260955	33260955	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:33260955G>A	uc003amx.2	-	5	817	c.658C>T	c.(658-660)CCT>TCT	p.P220S	SYN3_uc003amy.2_Missense_Mutation_p.P220S|SYN3_uc003amz.2_Missense_Mutation_p.P219S	NM_003490	NP_003481	O14994	SYN3_HUMAN	synapsin III isoform IIIa	220	C; actin-binding and synaptic-vesicle binding.				neurotransmitter secretion	cell junction|synaptic vesicle membrane	ATP binding|ligase activity			skin(1)	1						AACTTCTCAGGACCCAGGGAA	0.433													45	279					0	0	0.00361006	0	0
ISX	91464	broad.mit.edu	37	22	35478517	35478517	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:35478517G>A	uc003anj.2	+	2	1187	c.236G>A	c.(235-237)AGG>AAG	p.R79K	ISX_uc011amg.1_Missense_Mutation_p.R67K	NM_001008494	NP_001008494	Q2M1V0	ISX_HUMAN	intestine-specific homeobox	79						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)	5						GCAGAAGGAAGGAAGAGCAAG	0.552													42	123					0	0	0.00321405	0	0
APOL5	80831	broad.mit.edu	37	22	36122392	36122392	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:36122392G>A	uc003aof.2	+	3	277	c.277G>A	c.(277-279)GGA>AGA	p.G93R		NM_030642	NP_085145	Q9BWW9	APOL5_HUMAN	apolipoprotein L5	93					lipid metabolic process|lipid transport|lipoprotein metabolic process	cytoplasm|extracellular region	high-density lipoprotein particle binding|lipid binding|protein binding				0						CATGCCAGATGGAAATCTGTC	0.413													37	125					0	0	0.000953801	0	0
APOL5	80831	broad.mit.edu	37	22	36122920	36122921	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:36122920_36122921CC>TT	uc003aof.2	+	3	805_806	c.805_806CC>TT	c.(805-807)CCT>TTT	p.P269F		NM_030642	NP_085145	Q9BWW9	APOL5_HUMAN	apolipoprotein L5	269					lipid metabolic process|lipid transport|lipoprotein metabolic process	cytoplasm|extracellular region	high-density lipoprotein particle binding|lipid binding|protein binding				0						GAGACACATCCCTTTCTGGACG	0.54													98	354					0	0	6.4e-05	0	0
MYH9	4627	broad.mit.edu	37	22	36688254	36688254	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:36688254C>T	uc003apg.2	-	31	4353	c.4122G>A	c.(4120-4122)GAG>GAA	p.E1374E		NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	1374	Potential.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						CCACACTGTCCTCCATCTTCT	0.627			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				87	186					0	0	0.00361006	0	0
MYH9	4627	broad.mit.edu	37	22	36714331	36714331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:36714331G>A	uc003apg.2	-	11	1379	c.1148C>T	c.(1147-1149)ACC>ATC	p.T383I	MYH9_uc003aph.1_Missense_Mutation_p.T247I	NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	383	Myosin head-like.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						GGTGAAATCGGTCACATTGAT	0.502			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				270	171					0	0	0.00361006	0	0
EIF3D	8664	broad.mit.edu	37	22	36922103	36922104	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:36922103_36922104GG>AA	uc003apq.2	-	2	181_182	c.65_66CC>TT	c.(64-66)CCC>CTT	p.P22L	EIF3D_uc003apr.2_Missense_Mutation_p.P22L|EIF3D_uc011ams.1_5'UTR|EIF3D_uc011amt.1_Missense_Mutation_p.P22L	NM_003753	NP_003744	O15371	EIF3D_HUMAN	eukaryotic translation initiation factor 3	22						cytosol|eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			pancreas(1)	1						GAAACTGCTCGGGAACCGCACA	0.515													12	101					0	0	6.4e-05	0	0
CACNG2	10369	broad.mit.edu	37	22	36960716	36960716	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:36960716G>A	uc003aps.1	-	4	936	c.654C>T	c.(652-654)CTC>CTT	p.L218L		NM_006078	NP_006069	Q9Y698	CCG2_HUMAN	voltage-dependent calcium channel gamma-2	218					membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0						CAGAGGCCTGGAGGTAGTCCG	0.677													44	420					0	0	0.00361006	0	0
CSF2RB	1439	broad.mit.edu	37	22	37333557	37333557	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:37333557C>T	uc003aqa.3	+	14	1924	c.1707C>T	c.(1705-1707)CCC>CCT	p.P569P	CSF2RB_uc003aqc.3_Silent_p.P575P	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	569	Cytoplasmic (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	CCCCCAGCCCCCAGCCAGGCC	0.642													17	52					0	0	0.00229938	0	0
MFNG	4242	broad.mit.edu	37	22	37881962	37881962	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:37881962T>G	uc003ass.1	-	1	424	c.254A>C	c.(253-255)CAG>CCG	p.Q85P	MFNG_uc011ani.1_5'UTR|MFNG_uc011anj.1_Missense_Mutation_p.Q85P|CARD10_uc003ast.1_RNA	NM_002405	NP_002396	O00587	MFNG_HUMAN	O-fucosylpeptide	85	Lumenal (Potential).			Q -> L (in Ref. 1; AAC51358).	pattern specification process	extracellular space|integral to Golgi membrane	O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity			lung(1)	1	Melanoma(58;0.0574)					ACTTGTCACCTGTTCCCTGGT	0.612													9	65					0	0	0.00136819	0	0
CDC42EP1	11135	broad.mit.edu	37	22	37962599	37962599	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:37962599C>T	uc003asz.3	+	2	646	c.243C>T	c.(241-243)TTC>TTT	p.F81F		NM_152243	NP_689449	Q00587	BORG5_HUMAN	CDC42 effector protein 1	81					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|endomembrane system|Golgi apparatus|plasma membrane	protein binding				0	Melanoma(58;0.0574)					CCCGCAGCTTCCTGGCCAAGA	0.706													14	32					0	0	0.00244969	0	0
TRIOBP	11078	broad.mit.edu	37	22	38121734	38121734	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:38121734C>T	uc003atr.2	+	7	3442	c.3171C>T	c.(3169-3171)CCC>CCT	p.P1057P	TRIOBP_uc003atu.2_Silent_p.P885P|TRIOBP_uc003atq.1_Silent_p.P1057P|TRIOBP_uc003ats.1_Silent_p.P885P	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	1057					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					ACGAGCCTCCCTATATACCAC	0.657													22	171					0	0	0.00278032	0	0
TRIOBP	11078	broad.mit.edu	37	22	38130869	38130869	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:38130869G>A	uc003atr.2	+	9	4797	c.4526G>A	c.(4525-4527)AGA>AAA	p.R1509K	TRIOBP_uc003atu.2_Missense_Mutation_p.R1337K	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	1509					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CTAGGAAAGAGAAGCCCACTC	0.647													14	68					0	0	0.00185496	0	0
BAIAP2L2	80115	broad.mit.edu	37	22	38483273	38483273	+	Splice_Site	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:38483273T>A	uc003auw.2	-	11	1263	c.1119_splice	c.e11-1	p.A373_splice	BAIAP2L2_uc003auv.2_5'Flank	NM_025045	NP_079321	Q6UXY1	BI2L2_HUMAN	BAI1-associated protein 2-like 2						filopodium assembly|signal transduction		cytoskeletal adaptor activity|SH3 domain binding			pancreas(1)	1	Melanoma(58;0.045)					CAACCGCTCCTGTGGGGTAGA	0.453													39	69					0	0	0.00222228	0	0
PLA2G6	8398	broad.mit.edu	37	22	38509647	38509647	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:38509647C>A	uc003auy.1	-	15	2185	c.2049G>T	c.(2047-2049)AAG>AAT	p.K683N	PLA2G6_uc003auz.1_Missense_Mutation_p.K629N|PLA2G6_uc003ava.1_Missense_Mutation_p.K683N|PLA2G6_uc003avb.2_Missense_Mutation_p.K629N|PLA2G6_uc010gxk.1_RNA|BAIAP2L2_uc003auw.2_5'Flank|PLA2G6_uc003aux.1_Missense_Mutation_p.G75C	NM_003560	NP_003551	O60733	PA2G6_HUMAN	phospholipase A2, group VI isoform a	683					cardiolipin biosynthetic process|cell death|lipid catabolic process	centrosome|membrane				ovary(1)	1	Melanoma(58;0.045)				Quinacrine(DB01103)	GTTTCTTCACCTTGTTGGCCT	0.607													9	196					0.000442599	0.00120437	0.000442599	1	0
TMEM184B	25829	broad.mit.edu	37	22	38642014	38642014	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:38642014G>A	uc003avf.1	-	3	509	c.285C>T	c.(283-285)TCC>TCT	p.S95S	TMEM184B_uc003avg.1_Silent_p.S95S|TMEM184B_uc003avh.1_Silent_p.S29S|TMEM184B_uc010gxl.1_RNA	NM_012264	NP_036396	Q9Y519	T184B_HUMAN	transmembrane protein 184B	95	Helical; (Potential).					integral to membrane					0	Melanoma(58;0.045)					GGCTGAGCCAGGAGTCAAAGG	0.607													28	127					0	0	0.00178596	0	0
GTPBP1	9567	broad.mit.edu	37	22	39122340	39122340	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:39122340C>T	uc003awg.2	+	8	1450	c.1296C>T	c.(1294-1296)GAC>GAT	p.D432D		NM_004286	NP_004277	O00178	GTPB1_HUMAN	GTP binding protein 1	432					immune response|positive regulation of mRNA catabolic process|signal transduction	cytoplasmic exosome (RNase complex)|cytosol	GTP binding|GTPase activity			ovary(1)	1	Melanoma(58;0.04)					TGGGCCCAGACCCCTTGGGTA	0.592													56	41					0	0	0.00361006	0	0
APOBEC3D	140564	broad.mit.edu	37	22	39425373	39425373	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:39425373C>T	uc011aoe.1	+	5	665	c.611C>T	c.(610-612)CCG>CTG	p.P204L	APOBEC3D_uc011aof.1_Intron|APOBEC3D_uc003awu.3_Intron|APOBEC3D_uc003awt.3_Missense_Mutation_p.P204L|APOBEC3D_uc010gxu.2_5'UTR	NM_152426	NP_689639	Q96AK3	ABC3D_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	204					negative regulation of transposition		hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines|zinc ion binding				0	Melanoma(58;0.04)					CTCAGAAACCCGATGGAGGCA	0.522													79	105					0	0	0.00361006	0	0
APOBEC3G	60489	broad.mit.edu	37	22	39477044	39477044	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:39477044C>T	uc003awx.2	+	3	620	c.278C>T	c.(277-279)TCC>TTC	p.S93F	APOBEC3G_uc003awy.2_Missense_Mutation_p.S26F	NM_021822	NP_068594	Q9HC16	ABC3G_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	93					base conversion or substitution editing|DNA cytosine deamination|innate immune response|interspecies interaction between organisms|negative regulation of retroviral genome replication|negative regulation of transposition|positive regulation of defense response to virus by host|response to virus|viral reproduction	apolipoprotein B mRNA editing enzyme complex|cytosol|mitochondrion	cytidine deaminase activity|dCTP deaminase activity|protein homodimerization activity|RNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2	Melanoma(58;0.04)					TGGTACATATCCTGGAGCCCC	0.532													16	146					0	0	0.00074312	0	0
CACNA1I	8911	broad.mit.edu	37	22	40069009	40069009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:40069009G>A	uc003ayc.2	+	28	4705	c.4705G>A	c.(4705-4707)GAG>AAG	p.E1569K	CACNA1I_uc003ayd.2_Missense_Mutation_p.E1534K|CACNA1I_uc003aye.2_Missense_Mutation_p.E1484K|CACNA1I_uc003ayf.2_Missense_Mutation_p.E1449K	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1569	Helical; Name=S3 of repeat IV; (Potential).|IV.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	CATCACCCTGGAGGAGATCGA	0.602													78	87					0	0	0.00361006	0	0
TNRC6B	23112	broad.mit.edu	37	22	40696535	40696535	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:40696535C>A	uc011aor.1	+	13	3996	c.3785C>A	c.(3784-3786)TCT>TAT	p.S1262Y	TNRC6B_uc003aym.2_Missense_Mutation_p.S458Y|TNRC6B_uc003ayn.3_Missense_Mutation_p.S1152Y|TNRC6B_uc003ayo.2_Missense_Mutation_p.S1009Y	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	1262					gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						CCCCAGTTATCTCCTCAACAA	0.433													30	42					6.04164e-23	1.65953e-22	0.00209593	1	0
MKL1	57591	broad.mit.edu	37	22	40814646	40814646	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:40814646G>A	uc003ayv.1	-	9	2003	c.1796C>T	c.(1795-1797)CCC>CTC	p.P599L	MKL1_uc003ayw.1_Missense_Mutation_p.P599L|MKL1_uc010gye.1_Missense_Mutation_p.P599L|MKL1_uc010gyf.1_Missense_Mutation_p.P549L	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	599	Pro-rich.				positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						CGCCAGGCTGGGGTTGAATGG	0.637			T	RBM15	acute megakaryocytic leukemia								9	32					0	0	0.000978159	0	0
DNAJB7	150353	broad.mit.edu	37	22	41257788	41257788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:41257788C>T	uc003azj.2	-	1	343	c.211G>A	c.(211-213)GAA>AAA	p.E71K	XPNPEP3_uc011aox.1_Intron|XPNPEP3_uc003azh.2_Intron|XPNPEP3_uc003azi.2_Intron|XPNPEP3_uc011aoy.1_5'Flank|XPNPEP3_uc003azg.1_RNA|XPNPEP3_uc003azf.1_RNA|XPNPEP3_uc010gyh.1_5'Flank	NM_145174	NP_660157	Q7Z6W7	DNJB7_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 7	71					protein folding		heat shock protein binding|unfolded protein binding			ovary(1)	1						TTTAATCCTTCTGTGCCATAT	0.348													59	372					0	0	0.00361006	0	0
EP300	2033	broad.mit.edu	37	22	41523662	41523662	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:41523662G>A	uc003azl.3	+	4	1473	c.1078G>A	c.(1078-1080)GAA>AAA	p.E360K		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	360	TAZ-type 1.				apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						GGCCAATGGGGAAGTGAGGCA	0.537			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				56	221					0	0	0.00361006	0	0
ZC3H7B	23264	broad.mit.edu	37	22	41742086	41742086	+	Silent	SNP	C	T	T	rs149401669		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:41742086C>T	uc003azw.2	+	14	1755	c.1539C>T	c.(1537-1539)ACC>ACT	p.T513T	ZC3H7B_uc010gyl.1_Intron	NM_017590	NP_060060	Q9UGR2	Z3H7B_HUMAN	zinc finger CCCH-type containing 7B	529					interspecies interaction between organisms	nucleus	nucleic acid binding|protein binding|zinc ion binding			central_nervous_system(1)	1						ACGTGTGGACCGAGGAGCGGA	0.592													181	124					0	0	0.00361006	0	0
SEPT3	55964	broad.mit.edu	37	22	42383211	42383211	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:42383211G>A	uc003bbr.3	+	4	471	c.333G>A	c.(331-333)GTG>GTA	p.V111V	WBP2NL_uc011ape.1_Intron|SEPT3_uc003bbs.3_Silent_p.V111V|SEPT3_uc010gyr.2_Silent_p.V47V|SEPT3_uc011apj.1_Silent_p.V47V|SEPT3_uc010gys.2_Intron	NM_145733	NP_663786	Q9UH03	SEPT3_HUMAN	septin 3 isoform A	111					cell cycle|cytokinesis	cell junction|septin complex	GTP binding				0						CACCCCCAGTGATAGAGGAAG	0.522													8	92					0	0	0.000274275	0	0
TCF20	6942	broad.mit.edu	37	22	42605786	42605786	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:42605786G>A	uc003bcj.1	-	1	5660	c.5526C>T	c.(5524-5526)ATC>ATT	p.I1842I	TCF20_uc003bck.1_Silent_p.I1842I|TCF20_uc003bnt.2_Silent_p.I1842I	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	1842					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						GTAGTTCAGGGATTTGTAACT	0.517													44	508					0	0	0.00361006	0	0
SCUBE1	80274	broad.mit.edu	37	22	43619186	43619186	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:43619186G>A	uc003bdt.1	-	11	1332	c.1244C>T	c.(1243-1245)CCC>CTC	p.P415L		NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	415					adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				CTGGGCCCGGGGGGAGGTCTT	0.647													32	223					0	0	0.00375469	0	0
EFCAB6	64800	broad.mit.edu	37	22	44074038	44074038	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:44074038G>A	uc003bdy.1	-	13	1472	c.1257C>T	c.(1255-1257)CCC>CCT	p.P419P	EFCAB6_uc003bdz.1_Silent_p.P267P|EFCAB6_uc010gzi.1_Silent_p.P267P|EFCAB6_uc010gzk.1_RNA|EFCAB6_uc011aqa.1_Missense_Mutation_p.P240L	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	419	EF-hand 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				TCGGTCCATCGGGTTTCTGAG	0.318													21	71					0	0	0.00152264	0	0
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45258223	45258223	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:45258223G>A	uc003bfd.2	+	17	1952	c.1680G>A	c.(1678-1680)TTG>TTA	p.L560L	PRR5-ARHGAP8_uc003bfc.2_Silent_p.L481L|PRR5-ARHGAP8_uc011aqi.1_Silent_p.L472L|PRR5-ARHGAP8_uc011aqj.1_Silent_p.L403L|ARHGAP8_uc010gzv.2_3'UTR|ARHGAP8_uc003bfj.2_Silent_p.L381L|ARHGAP8_uc003bfk.2_Silent_p.L350L|ARHGAP8_uc003bfl.2_RNA	NM_181335	NP_851852			Rho GTPase activating protein 8 isoform 2											skin(2)	2						GGCTGAATTTGATCTGGCCAT	0.522													67	33					0	0	0.00361006	0	0
CELSR1	9620	broad.mit.edu	37	22	46835148	46835148	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:46835148C>T	uc003bhw.1	-	3	4344	c.4344G>A	c.(4342-4344)CCG>CCA	p.P1448P		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	1448	Extracellular (Potential).|Laminin G-like 1.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		AGGACTGGGGCGGGAAGCTCC	0.652													31	132					0	0	0.00327116	0	0
PLXNB2	23654	broad.mit.edu	37	22	50719522	50719522	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:50719522G>A	uc003bkv.3	-	23	3865	c.3759C>T	c.(3757-3759)TTC>TTT	p.F1253F	PLXNB2_uc003bkt.1_Silent_p.F45F|PLXNB2_uc003bku.1_Silent_p.F238F	NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	1253	Cytoplasmic (Potential).				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CCCTACCTGTGAATTCCTTCT	0.662													5	25					0	0	0.000602214	0	0
SBF1	6305	broad.mit.edu	37	22	50906822	50906822	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:50906822G>A	uc003blh.2	-	2	319	c.124C>T	c.(124-126)CCC>TCC	p.P42S	SBF1_uc011arx.1_5'Flank|SBF1_uc003bli.2_Missense_Mutation_p.P42S	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	42	UDENN.				protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		ATGCCCTGGGGGAATGGGTTG	0.657													4	27					0	0	0.000602214	0	0
KLHDC7B	113730	broad.mit.edu	37	22	50987878	50987878	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr22:50987878G>A	uc003bmi.2	+	1	1417	c.1283G>A	c.(1282-1284)TGG>TAG	p.W428*		NM_138433	NP_612442	Q96G42	KLD7B_HUMAN	kelch domain containing 7B	428	Kelch 3.									central_nervous_system(1)	1		all_cancers(38;1.53e-10)|all_epithelial(38;1.82e-09)|Breast(42;0.000448)|all_lung(38;0.000665)|Lung NSC(38;0.0104)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		OV - Ovarian serous cystadenocarcinoma(4;7.49e-69)|all cancers(3;9.79e-66)|Epithelial(4;1.3e-63)|GBM - Glioblastoma multiforme(4;0.000399)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		ACAGACGCCTGGACCCCACGC	0.672													72	116					0	0	0.00361006	0	0
CNTN6	27255	broad.mit.edu	37	3	1424755	1424755	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:1424755G>A	uc003boz.2	+	18	2563	c.2296G>A	c.(2296-2298)GAA>AAA	p.E766K	CNTN6_uc011asj.1_Missense_Mutation_p.E694K|CNTN6_uc003bpa.2_Missense_Mutation_p.E766K	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	766	Fibronectin type-III 2.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		CTACAGAAATGAAAGCATCAT	0.458													9	40					0	0	0.000673444	0	0
CNTN4	152330	broad.mit.edu	37	3	2942488	2942488	+	Missense_Mutation	SNP	G	A	A	rs145270510	byFrequency	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:2942488G>A	uc003bpc.2	+	10	1281	c.1060G>A	c.(1060-1062)GAA>AAA	p.E354K	CNTN4_uc003bpb.1_Missense_Mutation_p.E26K|CNTN4_uc003bpd.1_Missense_Mutation_p.E354K|CNTN4_uc003bpe.2_Missense_Mutation_p.E26K|CNTN4_uc003bpf.2_Missense_Mutation_p.E26K	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	354	Ig-like C2-type 4.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		AAAAAATGGCGAACCTCTGCT	0.398													14	55					0	0	0.00244969	0	0
IL5RA	3568	broad.mit.edu	37	3	3134004	3134004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:3134004C>T	uc011ask.1	-	10	1542	c.898G>A	c.(898-900)GAT>AAT	p.D300N	IL5RA_uc010hbq.2_Intron|IL5RA_uc010hbr.2_Intron|IL5RA_uc010hbs.2_Missense_Mutation_p.D300N|IL5RA_uc011asl.1_Missense_Mutation_p.D300N|IL5RA_uc011asm.1_Missense_Mutation_p.D300N|IL5RA_uc010hbt.2_Missense_Mutation_p.D300N|IL5RA_uc011asn.1_Missense_Mutation_p.D300N|IL5RA_uc010hbu.2_Missense_Mutation_p.D300N|IL5RA_uc010hbp.2_Missense_Mutation_p.D11N	NM_000564	NP_000555	Q01344	IL5RA_HUMAN	interleukin 5 receptor, alpha isoform 1	300	Extracellular (Potential).				cell proliferation	extracellular space|integral to membrane|plasma membrane	interleukin-5 receptor activity			ovary(1)	1				Epithelial(13;0.00278)|all cancers(10;0.00809)|OV - Ovarian serous cystadenocarcinoma(96;0.00944)		TTAGAAAGATCATCAATTATT	0.418													22	80					0	0	0.00188189	0	0
ITPR1	3708	broad.mit.edu	37	3	4714885	4714885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:4714885C>T	uc003bqa.2	+	21	2618	c.2270C>T	c.(2269-2271)TCA>TTA	p.S757L	ITPR1_uc010hca.1_Missense_Mutation_p.S742L|ITPR1_uc011asu.1_Intron|ITPR1_uc010hcb.1_Missense_Mutation_p.S742L	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	757	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		AACGAAATCTCAGGCCAGCTG	0.547													9	33					0	0	0.000274275	0	0
BHLHE40	8553	broad.mit.edu	37	3	5024874	5024875	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:5024874_5024875GG>AA	uc003bqf.2	+	5	1043_1044	c.736_737GG>AA	c.(736-738)GGA>AAA	p.G246K	BHLHE40_uc011asw.1_Missense_Mutation_p.G106K	NM_003670	NP_003661	O14503	BHE40_HUMAN	basic helix-loop-helix family, member e40	246						Golgi apparatus|nucleolus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CAGTGGCTATGGAGGAGAATCG	0.584													25	48					0	0	6.4e-05	0	0
GRM7	2917	broad.mit.edu	37	3	7620609	7620609	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:7620609C>T	uc003bqm.2	+	8	2290	c.2016C>T	c.(2014-2016)GCC>GCT	p.A672A	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.A672A|GRM7_uc003bql.2_Silent_p.A672A|GRM7_uc003bqn.1_Silent_p.A255A|GRM7_uc010hch.1_Silent_p.A183A	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	672	Helical; Name=3; (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	GTTATGCAGCCCTCTTGACGA	0.458													22	53					0	0	0.00152264	0	0
CAMK1	8536	broad.mit.edu	37	3	9804897	9804897	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:9804897C>T	uc003bst.2	-	4	394	c.216G>A	c.(214-216)AAG>AAA	p.K72K	OGG1_uc003bsk.2_Intron|OGG1_uc003bsl.2_Intron|OGG1_uc003bsm.2_Intron|OGG1_uc003bsn.2_Intron|OGG1_uc003bso.2_Intron|CAMK1_uc003bsu.2_RNA|CAMK1_uc003bss.2_5'Flank|uc003bsv.1_RNA	NM_003656	NP_003647	Q14012	KCC1A_HUMAN	calcium/calmodulin-dependent protein kinase I	72	Protein kinase.				cell differentiation|nervous system development|positive regulation of muscle cell differentiation|signal transduction	cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|skin(1)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.0475)		GGTGCTTGATCCTGAAAGGAG	0.338													27	93					0	0	0.00283554	0	0
TADA3	10474	broad.mit.edu	37	3	9831419	9831419	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:9831419G>A	uc003bsx.1	-	3	984	c.436C>T	c.(436-438)CCC>TCC	p.P146S	TADA3_uc010hcn.1_Missense_Mutation_p.P146S|TADA3_uc003bsy.2_Missense_Mutation_p.P146S|ARPC4_uc003bsz.1_5'Flank|ARPC4_uc003bta.1_5'Flank|ARPC4_uc003btb.1_5'Flank|ARPC4_uc003btc.1_5'Flank	NM_006354	NP_006345	O75528	TADA3_HUMAN	transcriptional adaptor 3 isoform a	146					estrogen receptor signaling pathway|histone H3 acetylation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex|STAGA complex|transcription factor TFTC complex	ligand-dependent nuclear receptor binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity				0						TCATTTTTGGGGATCCGTGGC	0.587													64	82					0	0	0.00361006	0	0
ATP2B2	491	broad.mit.edu	37	3	10430007	10430007	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:10430007G>A	uc003bvt.2	-	6	1300	c.861C>T	c.(859-861)ACC>ACT	p.T287T	ATP2B2_uc003bvv.2_Silent_p.T287T|ATP2B2_uc003bvw.2_Silent_p.T287T|ATP2B2_uc010hdp.2_Silent_p.T287T|ATP2B2_uc010hdo.2_Silent_p.T23T	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	287	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CCCCCAGGAGGGTAAAGATGA	0.522													53	164					0	0	0.00361006	0	0
SLC6A11	6538	broad.mit.edu	37	3	10953791	10953791	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:10953791G>A	uc003bvz.2	+	7	942	c.908G>A	c.(907-909)GGA>GAA	p.G303E		NM_014229	NP_055044	P48066	S6A11_HUMAN	solute carrier family 6 (neurotransmitter	303					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.229)		GTAGATGCTGGAACGCAGATC	0.488													69	160					0	0	0.00361006	0	0
ATG7	10533	broad.mit.edu	37	3	11356878	11356878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:11356878C>T	uc003bwc.2	+	7	706	c.589C>T	c.(589-591)CCT>TCT	p.P197S	ATG7_uc003bwd.2_Missense_Mutation_p.P197S|ATG7_uc011aum.1_Missense_Mutation_p.P158S	NM_006395	NP_006386	O95352	ATG7_HUMAN	APG7 autophagy 7-like isoform a	197					autophagy|cellular membrane fusion|positive regulation of protein modification process|protein lipidation|protein transport	cytoplasm	APG12 activating enzyme activity|protein homodimerization activity|ubiquitin activating enzyme activity			central_nervous_system(1)	1						CACAGCTCTTCCTTACTTCTT	0.373													9	33					0	0	0.000442599	0	0
TIMP4	7079	broad.mit.edu	37	3	12198371	12198372	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:12198371_12198372GG>TT	uc003bwo.2	-	3	607_608	c.300_301CC>AA	c.(298-303)TCCCTC>TCAATC	p.L101I	SYN2_uc003bwl.1_Intron|SYN2_uc003bwm.2_Intron|SYN2_uc003bwn.2_Intron	NM_003256	NP_003247	Q99727	TIMP4_HUMAN	tissue inhibitor of metalloproteinase 4	101	NTR.						metal ion binding|metalloendopeptidase inhibitor activity				0						ACACCACAGAGGGAAGAGTCAA	0.401													11	566					0	0	6.4e-05	0	0
NUP210	23225	broad.mit.edu	37	3	13415266	13415266	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:13415266C>T	uc003bxv.1	-	12	1622	c.1539G>A	c.(1537-1539)GTG>GTA	p.V513V	NUP210_uc003bxx.2_Silent_p.V185V	NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	513	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					GTGCCTGGATCACACTGAACC	0.567													17	14					0	0	0.000958276	0	0
FBLN2	2199	broad.mit.edu	37	3	13613143	13613143	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:13613143C>T	uc011avb.1	+	2	1413	c.1288C>T	c.(1288-1290)CCC>TCC	p.P430S	FBLN2_uc011auz.1_Missense_Mutation_p.P456S|FBLN2_uc011ava.1_Missense_Mutation_p.P430S|FBLN2_uc011avc.1_Missense_Mutation_p.P430S	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	430	Subdomain NB (Cys-free).|N.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			CCATTCTATCCCCAGAAGTAG	0.612													5	18					0	0	0.000602214	0	0
FGD5	152273	broad.mit.edu	37	3	14939518	14939518	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:14939518C>T	uc003bzc.2	+	6	3092	c.2982C>T	c.(2980-2982)ATC>ATT	p.I994I	FGD5_uc011avk.1_Silent_p.I994I|FGD5_uc003bzd.2_Silent_p.I72I	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	994	DH.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						CCACTCACATCCTGCAGTTCG	0.602													35	78					0	0	0.00128727	0	0
PLCL2	23228	broad.mit.edu	37	3	17053427	17053427	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:17053427C>T	uc011awc.1	+	5	2670	c.2565C>T	c.(2563-2565)TCC>TCT	p.S855S	PLCL2_uc011awd.1_Silent_p.S737S	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	863					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						CCCTGCAGTCCTTAACTGGAG	0.483													29	96					0	0	0.00428921	0	0
KCNH8	131096	broad.mit.edu	37	3	19554559	19554559	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:19554559C>T	uc003cbk.1	+	13	2372	c.2177C>T	c.(2176-2178)TCC>TTC	p.S726F	KCNH8_uc010hex.1_Missense_Mutation_p.S187F	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	726	Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						gaggCAGTCTCCCTCTCTCCC	0.408													4	11					0	0	0.00024832	0	0
KCNH8	131096	broad.mit.edu	37	3	19575308	19575308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:19575308C>T	uc003cbk.1	+	16	3236	c.3041C>T	c.(3040-3042)CCA>CTA	p.P1014L	KCNH8_uc010hex.1_Missense_Mutation_p.P475L	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	1014	Ser-rich.|Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						TGCATCTCTCCACATTCAGAT	0.448													38	142					0	0	0.0025221	0	0
ZNF385D	79750	broad.mit.edu	37	3	21466984	21466984	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:21466984C>T	uc003cce.2	-	6	1260	c.852G>A	c.(850-852)CAG>CAA	p.Q284Q		NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	284	Matrin-type 3.					nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						TGCTGTTTACCTGTTTAAGTT	0.398													14	56					0	0	0.00244969	0	0
ZNF385D	79750	broad.mit.edu	37	3	21552420	21552420	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:21552420C>T	uc003cce.2	-	4	780	c.372G>A	c.(370-372)AAG>AAA	p.K124K	ZNF385D_uc010hfb.1_RNA	NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	124						nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						TTGCGCTGTCCTTGGCAGTTA	0.463													25	77					0	0	0.00127121	0	0
RBMS3	27303	broad.mit.edu	37	3	29476339	29476339	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:29476339A>G	uc003cel.2	+	2	411	c.181A>G	c.(181-183)ACC>GCC	p.T61A	RBMS3_uc003cek.2_Missense_Mutation_p.T61A|RBMS3_uc010hfq.2_Missense_Mutation_p.T61A|RBMS3_uc003cem.2_Missense_Mutation_p.T60A|RBMS3_uc010hfr.2_Missense_Mutation_p.T61A	NM_001003793	NP_001003793	Q6XE24	RBMS3_HUMAN	RNA binding motif, single stranded interacting	61	RRM 1.					cytoplasm	nucleotide binding|RNA binding			central_nervous_system(1)	1		Ovarian(412;0.0956)				GTTGAGTAAAACCAACCTGTA	0.478													34	29					0	0	0.00327116	0	0
TRIM71	131405	broad.mit.edu	37	3	32933286	32933286	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:32933286C>T	uc003cff.2	+	4	2653	c.2590C>T	c.(2590-2592)CGA>TGA	p.R864*		NM_001039111	NP_001034200	Q2Q1W2	LIN41_HUMAN	tripartite motif-containing 71	864	NHL 6.				multicellular organismal development	cytoplasm	zinc ion binding			ovary(2)|large_intestine(1)	3						TGGCAACAATCGAATCCTCGT	0.438													85	70					0	0	0.00361006	0	0
ARPP21	10777	broad.mit.edu	37	3	35729321	35729321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:35729321G>A	uc003cgb.2	+	6	616	c.352G>A	c.(352-354)GAT>AAT	p.D118N	ARPP21_uc003cga.2_Missense_Mutation_p.D118N|ARPP21_uc011axy.1_Missense_Mutation_p.D118N|ARPP21_uc003cgf.2_5'Flank	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	118						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						AAAAGAAAAGGATAAAAACAA	0.353													6	12					0	0	0.00198382	0	0
MIR128-2	406916	broad.mit.edu	37	3	35786040	35786040	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:35786040C>T	hsa-mir-128-2|MI0000727	+			c.73C>T			ARPP21_uc003cga.2_Intron|ARPP21_uc003cgb.2_Intron|ARPP21_uc011axy.1_Intron|ARPP21_uc003cgf.2_Intron|ARPP21_uc003cgg.2_Intron|uc011axz.1_RNA																	0						CGGTCTCTTTCCCTACTGTGT	0.572													10	30					0	0	0.000673444	0	0
STAC	6769	broad.mit.edu	37	3	36570432	36570432	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:36570432C>T	uc003cgh.1	+	10	1104	c.1065C>T	c.(1063-1065)TTC>TTT	p.F355F	STAC_uc011aya.1_Silent_p.F294F	NM_003149	NP_003140	Q99469	STAC_HUMAN	SH3 and cysteine rich domain	355					intracellular signal transduction	cytoplasm|soluble fraction	metal ion binding			skin(2)|ovary(1)|pancreas(1)	4						TTAGAACCTTCATTGGGTGTA	0.393													9	34					0	0	0.000274275	0	0
TRANK1	9881	broad.mit.edu	37	3	36897504	36897504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:36897504C>T	uc003cgj.2	-	3	2229	c.1927G>A	c.(1927-1929)GAC>AAC	p.D643N		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1193					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						AAGTTCTCGTCCCTCAGGTCC	0.463													109	134					0	0	0.00361006	0	0
SCN10A	6336	broad.mit.edu	37	3	38753783	38753784	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:38753783_38753784GG>AA	uc003ciq.2	-	22	3957_3958	c.3957_3958CC>TT	c.(3955-3960)TCCCTT>TCTTTT	p.L1320F		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1320	III.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	AAAGGTACAAGGGAAAACTCTC	0.446													29	100					0	0	6.4e-05	0	0
SCN10A	6336	broad.mit.edu	37	3	38768117	38768117	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:38768117C>T	uc003ciq.2	-	16	3067	c.3067G>A	c.(3067-3069)GAA>AAA	p.E1023K		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1023					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GGGATCACTTCCTGCTGGAAG	0.532													23	59					0	0	0.00395357	0	0
SCN11A	11280	broad.mit.edu	37	3	38966958	38966958	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:38966958G>A	uc011ays.1	-	5	859	c.660C>T	c.(658-660)CCC>CCT	p.P220P		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	220	I.|Helical; Voltage-sensor; Name=S4 of repeat I; (By similarity).				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	AGGTACGCAGGGGCAATAGTT	0.463													10	38					0	0	0.000673444	0	0
SCN11A	11280	broad.mit.edu	37	3	38968341	38968341	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:38968341G>A	uc011ays.1	-	4	769	c.570C>T	c.(568-570)TTC>TTT	p.F190F		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	190	I.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GATCTCGAAGGAAAGAAAACT	0.368													35	116					0	0	0.00283554	0	0
CSRNP1	64651	broad.mit.edu	37	3	39185386	39185386	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:39185386C>T	uc003cjg.2	-	5	1144	c.930G>A	c.(928-930)AGG>AGA	p.R310R	CSRNP1_uc003cjh.2_Silent_p.R310R	NM_033027	NP_149016	Q96S65	CSRN1_HUMAN	AXIN1 up-regulated 1	310					apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(4)|skin(1)	5						CCTCCAGCTCCCTAAAGCTCT	0.607													22	23					0	0	0.00278032	0	0
XIRP1	165904	broad.mit.edu	37	3	39225952	39225952	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:39225952G>A	uc003cjk.1	-	2	5206	c.4985C>T	c.(4984-4986)TCC>TTC	p.S1662F	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_Missense_Mutation_p.S345F	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1662							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		ATCTCGGCTGGAAGGTAAAAC	0.542													32	99					0	0	0.00283554	0	0
XIRP1	165904	broad.mit.edu	37	3	39227007	39227007	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:39227007C>T	uc003cjk.1	-	2	4151	c.3930G>A	c.(3928-3930)AAG>AAA	p.K1310K	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_5'UTR	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1310	Pro-rich.						actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GTTTTGGGGTCTTTGTCTGTG	0.617													28	83					0	0	0.00106085	0	0
CCDC13	152206	broad.mit.edu	37	3	42775086	42775086	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:42775086C>T	uc003cly.3	-	11	1471	c.1387G>A	c.(1387-1389)GGA>AGA	p.G463R		NM_144719	NP_653320	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	463										ovary(1)	1						TCACCCACTCCTTTATTCCGA	0.592													16	63					0	0	0.000958276	0	0
CCDC13	152206	broad.mit.edu	37	3	42775094	42775094	+	Missense_Mutation	SNP	C	A	A	rs143411503		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:42775094C>A	uc003cly.3	-	11	1463	c.1379G>T	c.(1378-1380)CGG>CTG	p.R460L		NM_144719	NP_653320	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	460										ovary(1)	1						TCCTTTATTCCGAAGATACTG	0.587													5	72					0.00198382	0.00538272	0.00198382	1	0
CCR9	10803	broad.mit.edu	37	3	45943249	45943249	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:45943249A>T	uc003coz.1	+	3	1126	c.969A>T	c.(967-969)AGA>AGT	p.R323S	LZTFL1_uc003coy.1_Intron|LZTFL1_uc011bak.1_Intron|CCR9_uc010hiv.1_Missense_Mutation_p.R311S|CCR9_uc003cpa.1_Missense_Mutation_p.R311S	NM_031200	NP_112477	P51686	CCR9_HUMAN	chemokine (C-C motif) receptor 9 isoform A	323	Cytoplasmic (Potential).				cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane		p.R323I(1)		ovary(2)|breast(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00118)|KIRC - Kidney renal clear cell carcinoma(197;0.0182)|Kidney(197;0.0214)		TGGGTGAGAGATTCCGCCGGG	0.517													14	57					0	0	0.00185496	0	0
CCR1	1230	broad.mit.edu	37	3	46245447	46245447	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:46245447C>T	uc003cph.1	-	2	429	c.358G>A	c.(358-360)GAG>AAG	p.E120K	CCR3_uc003cpg.1_Intron	NM_001295	NP_001286	P32246	CCR1_HUMAN	chemokine (C-C motif) receptor 1	120	Helical; Name=3; (Potential).				cell adhesion|cell-cell signaling|cytokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	integral to plasma membrane	C-C chemokine receptor activity			skin(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		AAAAAGATCTCGCTGTACAAG	0.502													24	77					0	0	0.000720815	0	0
CCR3	1232	broad.mit.edu	37	3	46307076	46307076	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:46307076C>T	uc003cpg.1	+	4	970	c.427C>T	c.(427-429)CGA>TGA	p.R143*	CCR3_uc003cpi.1_Nonsense_Mutation_p.R143*|CCR3_uc003cpj.1_Nonsense_Mutation_p.R143*|CCR3_uc003cpk.1_Nonsense_Mutation_p.R164*|CCR3_uc010hjb.1_Nonsense_Mutation_p.R161*|CCR3_uc003cpl.1_Nonsense_Mutation_p.R176*	NM_178329	NP_847899	P51677	CCR3_HUMAN	CC chemokine receptor 3 isoform 1	143	Cytoplasmic (Potential).				cell adhesion|cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|inflammatory response|interspecies interaction between organisms|positive regulation of angiogenesis	integral to plasma membrane				ovary(3)|lung(3)|breast(1)|kidney(1)	8				BRCA - Breast invasive adenocarcinoma(193;0.00119)|KIRC - Kidney renal clear cell carcinoma(197;0.0183)|Kidney(197;0.0216)		GTTTGCCCTTCGAGCCCGGAC	0.498													22	63					0	0	0.00229938	0	0
RTP3	83597	broad.mit.edu	37	3	46542035	46542035	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:46542035G>A	uc003cps.1	+	2	413	c.345G>A	c.(343-345)CTG>CTA	p.L115L		NM_031440	NP_113628	Q9BQQ7	RTP3_HUMAN	transmembrane protein 7	115	Cytoplasmic (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste|protein targeting to membrane	cytoplasm|integral to membrane	protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0173)|Kidney(197;0.0204)		CAAGGATCCTGAAAAACCTGG	0.463													53	64					0	0	0.00361006	0	0
PTH1R	5745	broad.mit.edu	37	3	46944973	46944973	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:46944973C>T	uc003cqm.2	+	16	1812	c.1609C>T	c.(1609-1611)CAT>TAT	p.H537Y	PTH1R_uc003cqn.2_Missense_Mutation_p.H537Y	NM_000316	NP_000307	Q03431	PTH1R_HUMAN	parathyroid hormone receptor 1 precursor	537	Cytoplasmic (Potential).					cytoplasm|integral to plasma membrane|nucleus	parathyroid hormone receptor activity|peptide hormone binding|protein self-association			breast(1)	1						GCTGCCTGGCCATGCCAAGCC	0.677									Ollier_disease_/_Maffuci_syndrome				25	76					0	0	0.00332997	0	0
PTPN23	25930	broad.mit.edu	37	3	47453658	47453658	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:47453658C>G	uc003crf.1	+	22	4244	c.4148C>G	c.(4147-4149)CCG>CGG	p.P1383R	PTPN23_uc011bax.1_RNA|PTPN23_uc011bay.1_Missense_Mutation_p.P1253R|uc003cri.2_5'Flank	NM_015466	NP_056281	Q9H3S7	PTN23_HUMAN	protein tyrosine phosphatase, non-receptor type	1383	Tyrosine-protein phosphatase.				cilium morphogenesis	cilium|cytoplasmic membrane-bounded vesicle|microtubule basal body	protein tyrosine phosphatase activity			breast(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000271)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CATCAGCGGCCGCTGCACACG	0.627													20	59					0	0	0.00152264	0	0
COL7A1	1294	broad.mit.edu	37	3	48616938	48616938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:48616938C>T	uc003ctz.2	-	59	5247	c.5246G>A	c.(5245-5247)GGG>GAG	p.G1749E	MIR711_hsa-mir-711|MI0012488_5'Flank	NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1749	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TCCCCGAAACCCTTCAATGCC	0.607													13	38					0	0	0.00185496	0	0
COL7A1	1294	broad.mit.edu	37	3	48621382	48621382	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:48621382G>A	uc003ctz.2	-	38	4230	c.4229C>T	c.(4228-4230)CCC>CTC	p.P1410L		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1410	Triple-helical region.|Interrupted collagenous region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TGGTCCAGGGGGACCCTGGGA	0.647													11	28					0	0	0.00136819	0	0
P4HTM	54681	broad.mit.edu	37	3	49043268	49043268	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:49043268C>T	uc003cvg.2	+	7	1481	c.1132C>T	c.(1132-1134)CCT>TCT	p.P378S	P4HTM_uc003cvh.2_Missense_Mutation_p.P439S|WDR6_uc011bbx.1_5'Flank|WDR6_uc003cvj.2_5'Flank|WDR6_uc011bby.1_5'Flank|WDR6_uc010hkn.2_5'Flank|WDR6_uc011bbz.1_5'Flank	NM_177939	NP_808808	Q9NXG6	P4HTM_HUMAN	hypoxia-inducible factor prolyl 4-hydroxylase	378	Lumenal (Potential).|Fe2OG dioxygenase.					endoplasmic reticulum membrane|integral to membrane	calcium ion binding|iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			skin(1)|pancreas(1)	2					Vitamin C(DB00126)	GACTGTTTTCCCTGTAGCAGA	0.512													54	176					0	0	0.00361006	0	0
LOC646498	646498	broad.mit.edu	37	3	49215944	49215944	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:49215944T>C	uc011bcj.1	-	2	172	c.166A>G	c.(166-168)AAG>GAG	p.K56E		NM_001080528	NP_001073997			hypothetical LOC646498												0				BRCA - Breast invasive adenocarcinoma(193;8.04e-05)|Kidney(197;0.00221)|KIRC - Kidney renal clear cell carcinoma(197;0.00247)		TTGTCGTGCTTGGAGAAGAAG	0.517													12	41					0	0	0.00400662	0	0
C3orf62	375341	broad.mit.edu	37	3	49314265	49314265	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:49314265G>A	uc003cwn.2	-	1	244	c.41C>T	c.(40-42)TCT>TTT	p.S14F	C3orf62_uc003cwm.2_5'Flank	NM_198562	NP_940964	Q6ZUJ4	CC062_HUMAN	hypothetical protein LOC375341	14											0				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00218)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		TAGTTTTTCAGACATTTCTCC	0.448													10	52					0	0	0.000978159	0	0
DAG1	1605	broad.mit.edu	37	3	49570616	49570616	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:49570616C>T	uc003cxc.3	+	3	3090	c.2672C>T	c.(2671-2673)CCC>CTC	p.P891L		NM_004393	NP_004384	Q14118	DAG1_HUMAN	dystroglycan 1 preproprotein	891	PPXY motif.|Required for binding DMD and UTRN.|Required for interaction with CAV3.|Pro-rich.|Cytoplasmic (Potential).				cytoskeletal anchoring at plasma membrane|interspecies interaction between organisms|microtubule anchoring|negative regulation of cell migration|negative regulation of MAPKKK cascade|negative regulation of protein kinase B signaling cascade	basement membrane|contractile ring|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|extracellular space|filopodium|integral to membrane|integral to membrane of membrane fraction|lamellipodium|nucleoplasm	actin binding|alpha-actinin binding|calcium ion binding|laminin-1 binding|receptor activity|structural constituent of muscle|tubulin binding|vinculin binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;5.13e-05)|Kidney(197;0.00241)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)		TCACCTCCTCCCTATGTCCCA	0.652													9	24					0	0	0.000442599	0	0
BSN	8927	broad.mit.edu	37	3	49695089	49695089	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:49695089C>T	uc003cxe.3	+	5	8214	c.8100C>T	c.(8098-8100)ATC>ATT	p.I2700I		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	2700					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		AGGTGGAGATCGTCAGGTACA	0.652													25	83					0	0	0.001512	0	0
IP6K1	9807	broad.mit.edu	37	3	49770250	49770250	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:49770250G>A	uc003cxm.1	-	4	905	c.590C>T	c.(589-591)TCC>TTC	p.S197F	IP6K1_uc003cxn.1_Missense_Mutation_p.S32F|IP6K1_uc011bcv.1_Missense_Mutation_p.S32F|IP6K1_uc003cxo.2_Missense_Mutation_p.S197F	NM_153273	NP_695005	Q92551	IP6K1_HUMAN	inositol hexakisphosphate kinase 1 isoform 1	197					phosphatidylinositol phosphorylation	cytoplasm|nucleus	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol trisphosphate 3-kinase activity				0						CTTGGACTCGGAGCGCATGCG	0.557													11	63					0	0	0.00244969	0	0
CACNA2D2	9254	broad.mit.edu	37	3	50413430	50413430	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:50413430G>A	uc003daq.2	-	19	1775	c.1737C>T	c.(1735-1737)TTC>TTT	p.F579F	CACNA2D2_uc003dap.2_Silent_p.F579F	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	579	Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	CCGCATCCAGGAAGTCCAGAG	0.388													23	82					0	0	0.00278032	0	0
CACNA2D2	9254	broad.mit.edu	37	3	50471821	50471821	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:50471821T>A	uc003daq.2	-	3	366	c.328A>T	c.(328-330)AAT>TAT	p.N110Y	CACNA2D2_uc003dap.2_Missense_Mutation_p.N110Y	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	110	Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	TGAGGCTCATTCTCCTGTACC	0.572													61	48					0	0	0.00361006	0	0
DOCK3	1795	broad.mit.edu	37	3	51297624	51297624	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:51297624G>A	uc011bds.1	+	23	2245	c.2222G>A	c.(2221-2223)CGG>CAG	p.R741Q		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	741						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		GTACAGTCACGGATCCTGTAC	0.458													5	36					0	0	0.00116845	0	0
DOCK3	1795	broad.mit.edu	37	3	51394464	51394464	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:51394464C>T	uc011bds.1	+	44	4598	c.4575C>T	c.(4573-4575)ATC>ATT	p.I1525I		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1525	DHR-2.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		GCTCCCTGATCAGCCAGTATC	0.522													35	37					0	0	0.00283554	0	0
DNAH1	25981	broad.mit.edu	37	3	52403981	52403981	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:52403981C>T	uc011bef.1	+	38	6345	c.6084C>T	c.(6082-6084)CCC>CCT	p.P2028P		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	2028	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		AGCTGCCTCCCTTGCTGAAGC	0.607													35	103					0	0	0.00111076	0	0
STAB1	23166	broad.mit.edu	37	3	52557298	52557298	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:52557298G>A	uc003dej.2	+	64	7155	c.7081G>A	c.(7081-7083)GAT>AAT	p.D2361N	STAB1_uc003dek.1_Missense_Mutation_p.D376N|STAB1_uc003del.2_Missense_Mutation_p.D248N	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	2361	Extracellular (Potential).|FAS1 7.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		CTTCCTGGATGATGAGCTCAC	0.552													26	88					0	0	0.000720815	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54933883	54933883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:54933883C>T	uc003dhf.2	+	27	2485	c.2437C>T	c.(2437-2439)CCT>TCT	p.P813S	CACNA2D3_uc003dhg.1_Missense_Mutation_p.P719S|CACNA2D3_uc003dhh.1_RNA|uc003dhk.1_Intron	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	813	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		ACGGAAATCTCCTGTGGTGGC	0.453													5	9					0	0	0.00116845	0	0
LRTM1	57408	broad.mit.edu	37	3	54958920	54958920	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:54958920G>A	uc003dhl.2	-	2	464	c.330C>T	c.(328-330)CTC>CTT	p.L110L	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	110	LRR 3.|Extracellular (Potential).					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		CCAGGGAAAGGAGTGAATTCT	0.468													39	13					0	0	0.00148497	0	0
CACNA2D3	55799	broad.mit.edu	37	3	55002514	55002514	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:55002514G>A	uc003dhf.2	+	28	2535	c.2487G>A	c.(2485-2487)AGG>AGA	p.R829R	CACNA2D3_uc003dhg.1_Silent_p.R735R|CACNA2D3_uc003dhh.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	829	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TTTTCCAAAGGAAGTTCTGGA	0.378													5	17					0	0	0.00198382	0	0
CACNA2D3	55799	broad.mit.edu	37	3	55052318	55052318	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:55052318G>A	uc003dhf.2	+	35	3009	c.2961G>A	c.(2959-2961)GGG>GGA	p.G987G	CACNA2D3_uc003dhg.1_Silent_p.G893G|CACNA2D3_uc003dhh.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	987	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		AGACTACAGGGAATATTGCTT	0.507													11	10					0	0	0.00185496	0	0
WNT5A	7474	broad.mit.edu	37	3	55504257	55504257	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:55504257C>T	uc003dhn.2	-	5	1324	c.1006G>A	c.(1006-1008)GAG>AAG	p.E336K	WNT5A_uc003dhm.2_Missense_Mutation_p.E321K|WNT5A_uc010hmw.2_Missense_Mutation_p.E321K|WNT5A_uc010hmx.2_Missense_Mutation_p.E247K	NM_003392	NP_003383	P41221	WNT5A_HUMAN	wingless-type MMTV integration site family,	336					activation of JUN kinase activity|activation of protein kinase B activity|axon guidance|cartilage development|cellular protein localization|cellular response to calcium ion|cellular response to interferon-gamma|cellular response to lipopolysaccharide|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|cervix development|cochlea morphogenesis|convergent extension involved in organogenesis|dopaminergic neuron differentiation|dorsal/ventral axis specification|embryonic digit morphogenesis|embryonic skeletal system development|epithelial cell proliferation involved in mammary gland duct elongation|epithelial to mesenchymal transition|face development|genitalia development|heart looping|hemopoietic stem cell proliferation|keratinocyte differentiation|lateral sprouting involved in mammary gland duct morphogenesis|lens development in camera-type eye|male gonad development|mammary gland branching involved in thelarche|negative regulation of apoptosis|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of mesenchymal cell proliferation|negative regulation of transcription, DNA-dependent|neural tube closure|olfactory bulb interneuron development|optic cup formation involved in camera-type eye development|palate development|positive regulation of angiogenesis|positive regulation of cartilage development|positive regulation of cGMP metabolic process|positive regulation of chemokine biosynthetic process|positive regulation of cytokine secretion involved in immune response|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of macrophage activation|positive regulation of macrophage cytokine production|positive regulation of mesenchymal cell proliferation|positive regulation of neuron projection development|positive regulation of NF-kappaB transcription factor activity|positive regulation of ossification|positive regulation of protein catabolic process|positive regulation of protein kinase C signaling cascade|positive regulation of T cell chemotaxis|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|primitive streak formation|regulation of branching involved in mammary gland duct morphogenesis|somitogenesis|tail morphogenesis|type B pancreatic cell development|urinary bladder development|uterus development|vagina development|Wnt receptor signaling pathway, calcium modulating pathway|wound healing	extracellular space|membrane fraction|plasma membrane|proteinaceous extracellular matrix	frizzled binding|frizzled-2 binding|receptor tyrosine kinase-like orphan receptor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0				KIRC - Kidney renal clear cell carcinoma(284;0.00377)|Kidney(284;0.00408)|OV - Ovarian serous cystadenocarcinoma(275;0.204)		CACATGAGCTCGCAGCCATCC	0.637													22	72					0	0	0.00106085	0	0
FAM3D	131177	broad.mit.edu	37	3	58629399	58629399	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:58629399G>A	uc003dkq.2	-	6	609	c.312C>T	c.(310-312)GCC>GCT	p.A104A		NM_138805	NP_620160	Q96BQ1	FAM3D_HUMAN	family with sequence similarity 3, member D	104					negative regulation of insulin secretion	extracellular region	cytokine activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000225)|Kidney(10;0.000667)|KIRC - Kidney renal clear cell carcinoma(10;0.000802)|OV - Ovarian serous cystadenocarcinoma(275;0.169)		CATTCACCAGGGCGATGTTTA	0.453													20	95					0	0	0.00395357	0	0
ATXN7	6314	broad.mit.edu	37	3	63973943	63973944	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:63973943_63973944CC>TT	uc003dlw.3	+	9	1857_1858	c.1304_1305CC>TT	c.(1303-1305)TCC>TTT	p.S435F	ATXN7_uc003dlv.2_Missense_Mutation_p.S435F|ATXN7_uc010hnv.2_Missense_Mutation_p.S435F|ATXN7_uc011bfn.1_Missense_Mutation_p.S290F	NM_000333	NP_000324	O15265	ATX7_HUMAN	ataxin 7 isoform a	435	Pro-rich.				cell death|histone deubiquitination|nucleus organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nuclear matrix|nucleolus	protein binding|zinc ion binding				0		Prostate(884;0.0181)		BRCA - Breast invasive adenocarcinoma(55;0.000614)|KIRC - Kidney renal clear cell carcinoma(15;0.00294)|Kidney(15;0.00305)		GTGATTCCTTCCGAATCAAAGC	0.564													50	110					0	0	6.4e-05	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64666919	64666919	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:64666919G>A	uc003dmg.2	-	3	669	c.637C>T	c.(637-639)CAG>TAG	p.Q213*	ADAMTS9_uc011bfo.1_Nonsense_Mutation_p.Q213*|ADAMTS9_uc003dmh.1_Nonsense_Mutation_p.Q42*|ADAMTS9_uc003dmk.1_Nonsense_Mutation_p.Q213*	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	213					glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		GGCTCTCTCTGGGGGGCGCTG	0.458													109	424					0	0	0.00361006	0	0
MAGI1	9223	broad.mit.edu	37	3	65350400	65350400	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:65350400C>T	uc003dmn.2	-	20	3817	c.3291G>A	c.(3289-3291)AGG>AGA	p.R1097R	MAGI1_uc003dmm.2_Silent_p.R1125R|MAGI1_uc003dmo.2_Silent_p.R1126R|MAGI1_uc003dmp.2_Silent_p.R1030R	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	1126	PDZ 6.				cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		TGGTGGTATTCCTGCCAAAGT	0.393													29	47					0	0	0.00327116	0	0
MAGI1	9223	broad.mit.edu	37	3	65479266	65479266	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:65479266C>T	uc003dmn.2	-	3	997	c.471G>A	c.(469-471)GTG>GTA	p.V157V	MAGI1_uc003dmm.2_Silent_p.V157V|MAGI1_uc003dmo.2_Silent_p.V157V|MAGI1_uc003dmp.2_Silent_p.V157V|MAGI1_uc010hny.2_Silent_p.V41V|MAGI1_uc003dmr.2_Silent_p.V157V	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	157	Guanylate kinase-like.				cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		AGTTATAGTCCACGCCAGGCA	0.483													14	49					0	0	0.00244969	0	0
LRIG1	26018	broad.mit.edu	37	3	66457825	66457825	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:66457825G>A	uc003dmx.2	-	8	1040	c.1026C>T	c.(1024-1026)TCC>TCT	p.S342S	LRIG1_uc011bfu.1_5'Flank|LRIG1_uc003dmw.2_5'Flank|LRIG1_uc010hnz.2_Silent_p.S82S|LRIG1_uc010hoa.2_Silent_p.S342S	NM_015541	NP_056356	Q96JA1	LRIG1_HUMAN	leucine-rich repeats and immunoglobulin-like	342	Extracellular (Potential).|LRR 12.					integral to membrane				skin(3)|ovary(2)	5		Lung NSC(201;0.0101)		BRCA - Breast invasive adenocarcinoma(55;0.00047)		TGTGGCTGATGGAATTGTGGC	0.592													13	34					0	0	0.00244969	0	0
C3orf64	285203	broad.mit.edu	37	3	69028912	69028912	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:69028912C>T	uc003dnl.2	-	16	1646	c.1241G>A	c.(1240-1242)AGG>AAG	p.R414K	C3orf64_uc003dnj.2_Missense_Mutation_p.R93K|C3orf64_uc003dnk.2_Missense_Mutation_p.R330K|C3orf64_uc011bfw.1_RNA	NM_173654	NP_775925	Q5NDL2	AER61_HUMAN	AER61 glycosyltransferase	414						extracellular region	transferase activity, transferring glycosyl groups			ovary(1)	1		Lung NSC(201;0.126)		BRCA - Breast invasive adenocarcinoma(55;4.61e-05)|Epithelial(33;0.000291)|LUSC - Lung squamous cell carcinoma(21;0.0127)|KIRC - Kidney renal clear cell carcinoma(39;0.216)		GTGTGTGATCCTTAGTTGATC	0.403													25	16					0	0	0.00395357	0	0
FOXP1	27086	broad.mit.edu	37	3	71026984	71026984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:71026984G>A	uc003dol.2	-	11	1666	c.1343C>T	c.(1342-1344)TCG>TTG	p.S448L	FOXP1_uc003dom.2_Missense_Mutation_p.S372L|FOXP1_uc003don.2_RNA|FOXP1_uc003doo.2_Missense_Mutation_p.S448L|FOXP1_uc003dop.2_Missense_Mutation_p.S448L|FOXP1_uc003doq.1_Missense_Mutation_p.S447L|FOXP1_uc003doi.2_Missense_Mutation_p.S348L|FOXP1_uc003doj.2_Missense_Mutation_p.S348L|FOXP1_uc003dok.2_Missense_Mutation_p.S261L|FOXP1_uc003dor.1_Missense_Mutation_p.S226L	NM_032682	NP_116071	Q9H334	FOXP1_HUMAN	forkhead box P1 isoform 1	448					cardiac muscle cell differentiation|embryo development|immunoglobulin V(D)J recombination|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of immunoglobulin production|positive regulation of mesenchymal cell proliferation|pre-B cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|skeletal muscle tissue development|smooth muscle tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(201;4.62e-05)|Prostate(10;0.0181)|Hepatocellular(537;0.186)|Myeloproliferative disorder(1037;0.209)		BRCA - Breast invasive adenocarcinoma(55;1.17e-05)|Epithelial(33;1.39e-05)|LUSC - Lung squamous cell carcinoma(21;2.35e-05)|Lung(16;4.26e-05)		TCTACCTGACGAAATGGGCAC	0.488			T	PAX5	ALL								30	83					0	0	0.00209593	0	0
GPR27	2850	broad.mit.edu	37	3	71804034	71804034	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:71804034G>A	uc011bge.1	+	1	834	c.834G>A	c.(832-834)ACG>ACA	p.T278T	EIF4E3_uc003dox.2_5'Flank|EIF4E3_uc011bgd.1_5'Flank|EIF4E3_uc010hoc.2_5'Flank	NM_018971	NP_061844	Q9NS67	GPR27_HUMAN	G protein-coupled receptor 27	278	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Prostate(10;0.00899)		BRCA - Breast invasive adenocarcinoma(55;1.78e-05)|Epithelial(33;5.75e-05)|Lung(16;0.0012)|LUSC - Lung squamous cell carcinoma(21;0.00156)		AATTCAAGACGGAGAAGAGGC	0.547													12	25					0	0	0.000978159	0	0
CNTN3	5067	broad.mit.edu	37	3	74344349	74344349	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:74344349G>A	uc003dpm.1	-	18	2520	c.2440C>T	c.(2440-2442)CTA>TTA	p.L814L		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	814	Fibronectin type-III 3.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		GAGGAAGATAGGCTATTTGCA	0.378													19	77					0	0	0.00188189	0	0
ROBO2	6092	broad.mit.edu	37	3	77657030	77657030	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:77657030C>T	uc003dpy.3	+	21	3861	c.3218C>T	c.(3217-3219)CCT>CTT	p.P1073L	ROBO2_uc003dpz.2_Missense_Mutation_p.P1077L|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.P1077L|ROBO2_uc003dqa.2_Missense_Mutation_p.P200L	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	1073	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		GCCAATGTCCCTCTACCTCCC	0.423													19	59					0	0	0.00121646	0	0
VGLL3	389136	broad.mit.edu	37	3	87018183	87018183	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:87018183C>T	uc003dqn.2	-	3	858	c.494G>A	c.(493-495)GGA>GAA	p.G165E		NM_016206	NP_057290	A8MV65	VGLL3_HUMAN	colon carcinoma related protein	165					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	all_cancers(8;0.109)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00241)|Lung(72;0.00712)		AGGATGAACTCCCCCCAAACA	0.577													27	122					0	0	0.00106085	0	0
GPR128	84873	broad.mit.edu	37	3	100368606	100368606	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:100368606C>T	uc003duc.2	+	11	1602	c.1334C>T	c.(1333-1335)TCT>TTT	p.S445F	GPR128_uc011bhc.1_Missense_Mutation_p.S146F	NM_032787	NP_116176	Q96K78	GP128_HUMAN	G protein-coupled receptor 128 precursor	445	Helical; Name=1; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(1)	4						TGTGCACTGTCTGTTACTGGT	0.348													35	24					0	0	0.00195071	0	0
GPR128	84873	broad.mit.edu	37	3	100378648	100378648	+	Missense_Mutation	SNP	C	T	T	rs144717099		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:100378648C>T	uc003duc.2	+	14	2208	c.1940C>T	c.(1939-1941)TCG>TTG	p.S647L	GPR128_uc011bhc.1_Missense_Mutation_p.S348L|GPR128_uc003dud.2_Missense_Mutation_p.S170L	NM_032787	NP_116176	Q96K78	GP128_HUMAN	G protein-coupled receptor 128 precursor	647	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(1)	4						ATTACAATCTCGATCAAAGTG	0.438													12	39					0	0	0.00136819	0	0
IMPG2	50939	broad.mit.edu	37	3	101023106	101023106	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:101023106G>A	uc003duq.1	-	3	588	c.385C>T	c.(385-387)CCT>TCT	p.P129S	IMPG2_uc011bhe.1_5'UTR	NM_016247	NP_057331	Q9BZV3	IMPG2_HUMAN	interphotoreceptor matrix proteoglycan 2	129	Extracellular (Potential).				visual perception	integral to membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|hyaluronic acid binding|receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						TCACGCCCAGGAAGTCGATCC	0.413													12	23					0	0	0.00185496	0	0
SENP7	57337	broad.mit.edu	37	3	101062652	101062652	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:101062652G>A	uc003dut.2	-	14	2095	c.1984C>T	c.(1984-1986)CCT>TCT	p.P662S	SENP7_uc003duu.2_Missense_Mutation_p.P597S|SENP7_uc003duv.2_Missense_Mutation_p.P629S|SENP7_uc003duw.2_Missense_Mutation_p.P596S|SENP7_uc003dux.2_Missense_Mutation_p.P498S	NM_020654	NP_065705	Q9BQF6	SENP7_HUMAN	sentrin/SUMO-specific protease 7 isoform 1	662					proteolysis	nucleus	cysteine-type peptidase activity			ovary(3)|lung(2)	5						TGAAACAAAGGAAATGCCTGA	0.358													23	22					0	0	0.00229938	0	0
CBLB	868	broad.mit.edu	37	3	105470439	105470439	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:105470439A>T	uc003dwc.2	-	5	912	c.590T>A	c.(589-591)TTC>TAC	p.F197Y	CBLB_uc011bhi.1_Missense_Mutation_p.F219Y|CBLB_uc003dwd.1_Missense_Mutation_p.F197Y|CBLB_uc003dwe.1_Missense_Mutation_p.F197Y|CBLB_uc011bhj.1_RNA	NM_170662	NP_733762	Q13191	CBLB_HUMAN	Cas-Br-M (murine) ecotropic retroviral	197	Cbl-PTB.|EF-hand-like.				cell surface receptor linked signaling pathway|NLS-bearing substrate import into nucleus	cytoplasm|nucleus	calcium ion binding|ligase activity|signal transducer activity|zinc ion binding			lung(4)|ovary(3)|breast(1)|skin(1)	9						GCACTGTCTGAATACTTTCCA	0.373			Mis S		AML								13	21					0	0	0.000566183	0	0
GUCA1C	9626	broad.mit.edu	37	3	108626884	108626884	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:108626884C>T	uc003dxj.2	-	4	683	c.615G>A	c.(613-615)AAG>AAA	p.K205K	GUCA1C_uc003dxk.2_3'UTR	NM_005459	NP_005450	O95843	GUC1C_HUMAN	guanylate cyclase activator 1C	205					signal transduction|visual perception		calcium ion binding|calcium sensitive guanylate cyclase activator activity				0						TCATTTTCACCTTCCCTAGAC	0.453													8	21					0	0	0.000274275	0	0
DPPA4	55211	broad.mit.edu	37	3	109050814	109050814	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:109050814G>A	uc003dxq.3	-	3	298	c.243C>T	c.(241-243)ATC>ATT	p.I81I	DPPA4_uc011bho.1_Silent_p.I81I|DPPA4_uc011bhp.1_Silent_p.I81I	NM_018189	NP_060659	Q7L190	DPPA4_HUMAN	developmental pluripotency associated 4	81						nucleus	protein binding			upper_aerodigestive_tract(1)	1						GTAATGGAGGGATTGGTATCT	0.478													31	69					0	0	0.00283554	0	0
ZBED2	79413	broad.mit.edu	37	3	111312580	111312580	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:111312580C>T	uc003dxy.2	-	2	1354	c.469G>A	c.(469-471)GAA>AAA	p.E157K	CD96_uc003dxv.2_Intron|CD96_uc003dxw.2_Intron|CD96_uc003dxx.2_Intron|CD96_uc010hpy.1_Intron	NM_024508	NP_078784	Q9BTP6	ZBED2_HUMAN	zinc finger, BED domain containing 2	157							DNA binding|metal ion binding			skin(1)	1						ACCTCCTTTTCCCTTTGGCTG	0.627													23	47					0	0	0.00106085	0	0
GCET2	257144	broad.mit.edu	37	3	111842472	111842472	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:111842472C>T	uc003dys.1	-	6	517	c.367G>A	c.(367-369)GGA>AGA	p.G123R	C3orf52_uc011bht.1_Intron|C3orf52_uc003dyr.1_Intron|GCET2_uc003dyt.1_Missense_Mutation_p.G57R	NM_152785	NP_689998	Q8N6F7	GCET2_HUMAN	germinal center expressed transcript 2 isoform	123						mitochondrion					0						GTCTCAGTTCCTCCCAAGGAC	0.483													29	55					0	0	0.00178596	0	0
KIAA2018	205717	broad.mit.edu	37	3	113375879	113375879	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:113375879G>A	uc003eam.2	-	7	5061	c.4650C>T	c.(4648-4650)TCC>TCT	p.S1550S	KIAA2018_uc003eal.2_Silent_p.S1494S	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	1550	Gln-rich.				regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						GGCCAGTCTTGGATCGGGATT	0.498													16	32					0	0	0.00152264	0	0
KIAA2018	205717	broad.mit.edu	37	3	113378866	113378867	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:113378866_113378867GA>AT	uc003eam.2	-	7	2073_2074	c.1662_1663TC>AT	c.(1660-1665)ATTCTT>ATATTT	p.L555F	KIAA2018_uc003eal.2_Missense_Mutation_p.L499F	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	555					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						GGTGGCTGAAGAATTATAACAT	0.431													25	52					0	0	6.4e-05	0	0
ATP6V1A	523	broad.mit.edu	37	3	113528256	113528256	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:113528256C>T	uc003eao.2	+	15	1902	c.1836C>T	c.(1834-1836)TTC>TTT	p.F612F	ATP6V1A_uc011bik.1_Silent_p.F579F	NM_001690	NP_001681	P38606	VATA_HUMAN	ATPase, H+ transporting, lysosomal V1 subunit A	612					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|integral to plasma membrane|proton-transporting V-type ATPase, V1 domain	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			ovary(2)|skin(1)	3						AGAATGCATTCCGTAGCCTTG	0.388													13	29					0	0	0.00244969	0	0
C3orf30	152405	broad.mit.edu	37	3	118866239	118866239	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:118866239C>T	uc003ecb.1	+	1	1243	c.1203C>T	c.(1201-1203)GAC>GAT	p.D401D	IGSF11_uc003eby.2_5'Flank|IGSF11_uc003ebz.2_5'Flank|IGSF11_uc010hqs.2_5'Flank|C3orf30_uc011biw.1_Silent_p.D401D	NM_152539	NP_689752	Q96M34	CC030_HUMAN	hypothetical protein LOC152405	401										ovary(2)	2				GBM - Glioblastoma multiforme(114;0.222)		GCCAAGTAGACCTCAATTCCA	0.448													12	24					0	0	0.000978159	0	0
POPDC2	64091	broad.mit.edu	37	3	119367193	119367193	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:119367193G>A	uc003ecx.1	-	3	1057	c.923C>T	c.(922-924)CCC>CTC	p.P308L	POPDC2_uc010hqw.1_Missense_Mutation_p.P308L|POPDC2_uc003ecy.1_Missense_Mutation_p.P126L	NM_022135	NP_071418	Q9HBU9	POPD2_HUMAN	popeye protein 2	308						integral to membrane				central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.242)		AGAACAAGGGGGTGTTTGCTG	0.607													32	17					0	0	0.00428921	0	0
RABL3	285282	broad.mit.edu	37	3	120449619	120449619	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:120449619G>A	uc003edx.2	-	2	92	c.62C>T	c.(61-63)TCG>TTG	p.S21L		NM_173825	NP_776186	Q5HYI8	RABL3_HUMAN	RAB, member of RAS oncogene family-like 3	21	Small GTPase-like.				small GTPase mediated signal transduction		GTP binding				0				GBM - Glioblastoma multiforme(114;0.151)		ATGGACTAACGAAGATTTCCC	0.398													12	50					0	0	0.00244969	0	0
GTF2E1	2960	broad.mit.edu	37	3	120495420	120495420	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:120495420C>T	uc003edz.3	+	4	915	c.801C>T	c.(799-801)GCC>GCT	p.A267A		NM_005513	NP_005504	P29083	T2EA_HUMAN	general transcription factor IIE, polypeptide 1,	267					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	nucleoplasm	protein binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.159)		TTCATCGAGCCTCACTGGAAG	0.453													15	45					0	0	0.00316338	0	0
ARGFX	503582	broad.mit.edu	37	3	121289614	121289614	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:121289614G>A	uc003eef.2	+	2	149	c.54G>A	c.(52-54)AGG>AGA	p.R18R		NM_001012659	NP_001012677	A6NJG6	ARGFX_HUMAN	arginine-fifty homeobox	18						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(114;0.152)		TCATCAATAGGAATTATTCCA	0.463													17	56					0	0	0.000958276	0	0
ARGFX	503582	broad.mit.edu	37	3	121305037	121305037	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:121305037C>T	uc003eef.2	+	5	633	c.538C>T	c.(538-540)CCA>TCA	p.P180S		NM_001012659	NP_001012677	A6NJG6	ARGFX_HUMAN	arginine-fifty homeobox	180						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(114;0.152)		CAGCTCCCTTCCATCTCAGCC	0.493													39	89					0	0	0.0025221	0	0
HCLS1	3059	broad.mit.edu	37	3	121350806	121350806	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:121350806C>T	uc003eeh.3	-	14	1473	c.1348G>A	c.(1348-1350)GAT>AAT	p.D450N	HCLS1_uc011bjj.1_Missense_Mutation_p.D413N	NM_005335	NP_005326	P14317	HCLS1_HUMAN	hematopoietic cell-specific Lyn substrate 1	450	SH3.				erythrocyte differentiation|intracellular signal transduction|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of STAT protein|response to hormone stimulus	mitochondrion|nucleus|plasma membrane	DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(114;0.0912)		TCGTCCGGATCAAAGGAAAGC	0.493													76	44					0	0	0.00361006	0	0
HCLS1	3059	broad.mit.edu	37	3	121351017	121351017	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:121351017G>A	uc003eeh.3	-	13	1380	c.1255C>T	c.(1255-1257)CCG>TCG	p.P419S	HCLS1_uc011bjj.1_Missense_Mutation_p.P382S	NM_005335	NP_005326	P14317	HCLS1_HUMAN	hematopoietic cell-specific Lyn substrate 1	419					erythrocyte differentiation|intracellular signal transduction|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of STAT protein|response to hormone stimulus	mitochondrion|nucleus|plasma membrane	DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(114;0.0912)		gccccagccGGGCAGCCTGAT	0.418													12	28					0	0	0.00136819	0	0
GOLGB1	2804	broad.mit.edu	37	3	121417610	121417610	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:121417610C>T	uc003eei.3	-	13	1871	c.1745G>A	c.(1744-1746)GGA>GAA	p.G582E	GOLGB1_uc010hrc.2_Missense_Mutation_p.G587E|GOLGB1_uc003eej.3_Missense_Mutation_p.G548E|GOLGB1_uc011bjm.1_Missense_Mutation_p.G468E|GOLGB1_uc010hrd.1_Missense_Mutation_p.G546E	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	582	Potential.|Cytoplasmic (Potential).				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		AGCCCTTTTTCCCTGGAGCTG	0.358													12	39					0	0	0.00136819	0	0
CD86	942	broad.mit.edu	37	3	121822506	121822506	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:121822506G>A	uc003eet.2	+	3	328	c.212G>A	c.(211-213)GGC>GAC	p.G71D	CD86_uc011bjo.1_5'UTR|CD86_uc011bjp.1_Intron|CD86_uc003eeu.2_Missense_Mutation_p.G65D	NM_175862	NP_787058	P42081	CD86_HUMAN	CD86 antigen isoform 1	71	Ig-like V-type.|Extracellular (Potential).				interspecies interaction between organisms|positive regulation of cell proliferation|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-4 biosynthetic process|positive regulation of lymphotoxin A biosynthetic process|positive regulation of T-helper 2 cell differentiation|positive regulation of transcription, DNA-dependent|T cell costimulation		coreceptor activity|protein binding			pancreas(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.156)	Abatacept(DB01281)	GTATACTTAGGCAAAGAGAAA	0.433													18	41					0	0	0.00121646	0	0
CASR	846	broad.mit.edu	37	3	121981042	121981042	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:121981042G>A	uc003eev.3	+	4	1532	c.1160G>A	c.(1159-1161)AGC>AAC	p.S387N	CASR_uc003eew.3_Missense_Mutation_p.S387N	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	387	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TTTAGCAACAGCTCGACAGCC	0.488													15	49					0	0	0.00244969	0	0
CASR	846	broad.mit.edu	37	3	122002548	122002548	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:122002548A>G	uc003eev.3	+	7	2119	c.1747A>G	c.(1747-1749)AAC>GAC	p.N583D	CASR_uc003eew.3_Missense_Mutation_p.N593D	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	583	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CAGTGCCTGTAACAAGTGCCC	0.488													27	53					0	0	0.00178596	0	0
MYLK	4638	broad.mit.edu	37	3	123444892	123444892	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:123444892G>A	uc003ego.2	-	12	1832	c.1550C>T	c.(1549-1551)TCC>TTC	p.S517F	MYLK_uc011bjw.1_Missense_Mutation_p.S517F|MYLK_uc003egp.2_Missense_Mutation_p.S448F|MYLK_uc003egq.2_Missense_Mutation_p.S517F|MYLK_uc003egr.2_Missense_Mutation_p.S448F|MYLK_uc003egs.2_Missense_Mutation_p.S341F	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	517	Ig-like C2-type 4.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		CAGGACACTGGAGAAGGAGGG	0.597													10	20					0	0	0.000978159	0	0
ITGB5	3693	broad.mit.edu	37	3	124515542	124515542	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:124515542C>T	uc003eho.2	-	10	1683	c.1386G>A	c.(1384-1386)ACG>ACA	p.T462T	ITGB5_uc010hrx.2_RNA	NM_002213	NP_002204	P18084	ITB5_HUMAN	integrin, beta 5 precursor	462	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|muscle contraction	integrin complex	receptor activity			skin(2)	2				GBM - Glioblastoma multiforme(114;0.163)		TGCAGCCGCACGTGCAGTTGT	0.672													12	18					0	0	0.00136819	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125833439	125833439	+	Silent	SNP	G	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:125833439G>T	uc003eim.1	-	18	2233	c.2043C>A	c.(2041-2043)ATC>ATA	p.I681I	ALDH1L1_uc010hse.1_Intron|ALDH1L1_uc011bki.1_Silent_p.I580I|ALDH1L1_uc003ein.1_Silent_p.I216I	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	681	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	CAGCAAAGATGATGAGGGGTG	0.617													36	79					4.14194e-30	1.13937e-29	0.00285205	1	0
EEFSEC	60678	broad.mit.edu	37	3	128060384	128060384	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:128060384C>T	uc003eki.2	+	5	1133	c.1095C>T	c.(1093-1095)GAC>GAT	p.D365D	EEFSEC_uc003ekj.2_Silent_p.D310D	NM_021937	NP_068756	P57772	SELB_HUMAN	eukaryotic elongation factor,	365						cytoplasm|nucleus	GTP binding|GTPase activity|translation elongation factor activity			ovary(1)	1						CTATACTGGACTCTTTCAACT	0.493													20	39					0	0	0.000958276	0	0
KIAA1257	57501	broad.mit.edu	37	3	128696984	128696984	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:128696984C>T	uc003elj.3	-	5	908	c.712G>A	c.(712-714)GGC>AGC	p.G238S	KIAA1257_uc003elg.1_Missense_Mutation_p.G238S|KIAA1257_uc003eli.3_Missense_Mutation_p.G126S	NM_020741	NP_065792	Q9ULG3	K1257_HUMAN	hypothetical protein LOC57501	238											0						TTCTCAATGCCCTGTTCAGAT	0.368													23	62					0	0	0.000720815	0	0
Unknown	0	broad.mit.edu	37	3	129140478	129140478	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:129140478G>A	uc003emg.2	-	2	381	c.218C>T	c.(217-219)CCT>CTT	p.P73L		NM_207307	NP_997190			hypothetical protein LOC90288																		TTGGGATGCAGGATTAAGGGG	0.572													12	30					0	0	0.00185496	0	0
PLXND1	23129	broad.mit.edu	37	3	129279270	129279270	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:129279270G>A	uc003emx.2	-	31	5136	c.5036C>T	c.(5035-5037)CCT>CTT	p.P1679L	PLXND1_uc003emw.2_5'Flank|PLXND1_uc011blb.1_Missense_Mutation_p.P347L	NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	1679	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						CTCGTCCGTAGGCAGCACCTG	0.647													4	6					0	0	0.000602214	0	0
EPHB1	2047	broad.mit.edu	37	3	134851795	134851795	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:134851795C>T	uc003eqt.2	+	5	1421	c.1201C>T	c.(1201-1203)CCC>TCC	p.P401S	EPHB1_uc010htz.1_RNA|EPHB1_uc011bly.1_3'UTR|EPHB1_uc003equ.2_5'UTR	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	401	Extracellular (Potential).|Fibronectin type-III 1.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						GGCCCACACCCCCTACACCTT	0.607													12	20					0	0	0.000978159	0	0
PIK3CB	5291	broad.mit.edu	37	3	138417822	138417823	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:138417822_138417823CG>AT	uc011bmq.1	-	11	1696_1697	c.1696_1697CG>AT	c.(1696-1698)CGA>ATA	p.R566I	PIK3CB_uc011bmn.1_Missense_Mutation_p.R78I|PIK3CB_uc011bmo.1_Missense_Mutation_p.R12I|PIK3CB_uc011bmp.1_Missense_Mutation_p.R153I	NM_006219	NP_006210	P42338	PK3CB_HUMAN	catalytic phosphatidylinositol 3-kinase beta	566	PI3K helical.				activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						GAAAATCTCTCGGCAGTCTTGT	0.381													9	549					0	0	6.4e-05	0	0
CLSTN2	64084	broad.mit.edu	37	3	140122557	140122557	+	Missense_Mutation	SNP	C	T	T	rs150165907		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:140122557C>T	uc003etn.2	+	3	509	c.319C>T	c.(319-321)CGT>TGT	p.R107C	CLSTN2_uc003etm.2_Missense_Mutation_p.R107C	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	107	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						GGGCCGGCTCCGTGCCAAGAG	0.562										HNSCC(16;0.037)			47	104					0	0	0.00361006	0	0
CLSTN2	64084	broad.mit.edu	37	3	140123497	140123497	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:140123497G>A	uc003etn.2	+	4	716	c.526G>A	c.(526-528)GAC>AAC	p.D176N	CLSTN2_uc003etm.2_Missense_Mutation_p.D176N	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	176	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						CAAGATCTATGACAGCATTCT	0.527										HNSCC(16;0.037)			23	49					0	0	0.00395357	0	0
CPA3	1359	broad.mit.edu	37	3	148586804	148586804	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:148586804G>A	uc003ewm.2	+	3	299	c.247G>A	c.(247-249)GAT>AAT	p.D83N		NM_001870	NP_001861	P15088	CBPA3_HUMAN	carboxypeptidase A3 precursor	83					proteolysis	stored secretory granule|transport vesicle	metallocarboxypeptidase activity|zinc ion binding			breast(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			GTCTGCCTTGGATCAAAATAA	0.413													17	30					0	0	0.00152264	0	0
CPA3	1359	broad.mit.edu	37	3	148601524	148601524	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:148601524C>T	uc003ewm.2	+	9	955	c.903C>T	c.(901-903)ATC>ATT	p.I301I		NM_001870	NP_001861	P15088	CBPA3_HUMAN	carboxypeptidase A3 precursor	301				I -> T (in Ref. 5; AAB22578).	proteolysis	stored secretory granule|transport vesicle	metallocarboxypeptidase activity|zinc ion binding			breast(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			AGGTTTACATCACCTTCCATT	0.438													15	35					0	0	0.000566183	0	0
CP	1356	broad.mit.edu	37	3	148928053	148928053	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:148928053C>T	uc003ewy.3	-	3	761	c.508G>A	c.(508-510)GGA>AGA	p.G170R	CP_uc011bnr.1_RNA|CP_uc003ewx.3_5'Flank|CP_uc003ewz.2_Missense_Mutation_p.G170R|CP_uc010hvf.1_5'Flank	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor	170	F5/8 type A 1.|Plastocyanin-like 1.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)	TTGCCATCTCCTTCCCCAGGA	0.408													28	63					0	0	0.000878237	0	0
GPR171	29909	broad.mit.edu	37	3	150916724	150916724	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:150916724C>T	uc003eyq.3	-	3	690	c.450G>A	c.(448-450)ATG>ATA	p.M150I	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_013308	NP_037440	O14626	GP171_HUMAN	G protein-coupled receptor 171	150	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TGGGAATCATCATATTTGGCA	0.378													24	60					0	0	0.00278032	0	0
AADACL2	344752	broad.mit.edu	37	3	151474812	151474812	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:151474812C>T	uc003ezc.2	+	5	756	c.636C>T	c.(634-636)ATC>ATT	p.I212I	AADACL2_uc010hvn.2_5'UTR	NM_207365	NP_997248	Q6P093	ADCL2_HUMAN	arylacetamide deacetylase-like 2 precursor	212						extracellular region|integral to membrane	carboxylesterase activity				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			AACATAAAATCAAGATGCAAG	0.328													20	22					0	0	0.00121646	0	0
DHX36	170506	broad.mit.edu	37	3	154007607	154007607	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:154007607G>A	uc003ezy.3	-	16	1904	c.1823C>T	c.(1822-1824)CCT>CTT	p.P608L	DHX36_uc010hvq.2_Missense_Mutation_p.P594L|DHX36_uc003ezz.3_Missense_Mutation_p.P608L	NM_020865	NP_065916	Q9H2U1	DHX36_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 36	608	Helicase C-terminal.					cytoplasm|nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			GCAATGACCAGGTTGAACTCT	0.353													12	29					0	0	0.00244969	0	0
GPR149	344758	broad.mit.edu	37	3	154147234	154147234	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:154147234G>A	uc003faa.2	-	1	271	c.171C>T	c.(169-171)TCC>TCT	p.S57S		NM_001038705	NP_001033794	Q86SP6	GP149_HUMAN	G protein-coupled receptor 149	57	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(6)	6			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			TTTTCAGCAGGGAAATTAGTG	0.443													21	53					0	0	0.00152264	0	0
MME	4311	broad.mit.edu	37	3	154836577	154836577	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:154836577G>A	uc010hvr.1	+	8	908	c.697G>A	c.(697-699)GAA>AAA	p.E233K	MME_uc003fab.1_Missense_Mutation_p.E233K|MME_uc003fac.1_Missense_Mutation_p.E233K|MME_uc003fad.1_Missense_Mutation_p.E233K|MME_uc003fae.1_Missense_Mutation_p.E233K	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase	233	Extracellular (Potential).				cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	AGATTACTATGAATGCACTGG	0.284													9	7					0	0	0.00136819	0	0
PLCH1	23007	broad.mit.edu	37	3	155215207	155215207	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:155215207C>T	uc011bok.1	-	14	2038	c.1761_splice	c.e14-1	p.R587_splice	PLCH1_uc011boj.1_Splice_Site_p.R587_splice|PLCH1_uc011bol.1_Splice_Site_p.R569_splice	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a						lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			GCGACCCAATCTGTGAAGTAC	0.458													21	42					0	0	0.00152264	0	0
GMPS	8833	broad.mit.edu	37	3	155652728	155652728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:155652728C>T	uc003faq.2	+	14	2035	c.1700C>T	c.(1699-1701)CCA>CTA	p.P567L	GMPS_uc011bom.1_Missense_Mutation_p.P468L	NM_003875	NP_003866	P49915	GUAA_HUMAN	guanine monophosphate synthetase	567					glutamine metabolic process|purine base biosynthetic process	cytosol	ATP binding|GMP synthase (glutamine-hydrolyzing) activity|GMP synthase activity			ovary(2)|lung(1)	3			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)		L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	TTTGGCCCACCAGTTAAAGAA	0.378			T	MLL	AML								20	44					0	0	0.00188189	0	0
SHOX2	6474	broad.mit.edu	37	3	157816015	157816015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:157816015G>A	uc003fbr.2	-	5	936	c.797C>T	c.(796-798)CCG>CTG	p.P266L	SHOX2_uc003fbs.2_Missense_Mutation_p.P290L|SHOX2_uc010hvw.2_Missense_Mutation_p.P254L	NM_006884	NP_006875	O60902	SHOX2_HUMAN	short stature homeobox 2 isoform a	266					nervous system development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			Lung(72;0.00318)|LUSC - Lung squamous cell carcinoma(72;0.0043)			GGCCAGGTGCGGATGCAGGTG	0.672													36	63					0	0	0.00283554	0	0
ZBBX	79740	broad.mit.edu	37	3	167031864	167031864	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:167031864C>T	uc003fep.2	-	16	1638	c.1315G>A	c.(1315-1317)GAA>AAA	p.E439K	ZBBX_uc011bpc.1_Missense_Mutation_p.E439K|ZBBX_uc003feq.2_Missense_Mutation_p.E410K	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	439						intracellular	zinc ion binding			ovary(2)	2						ATGCCATTTTCATATGGAAAG	0.289													29	47					0	0	0.00106085	0	0
LRRC31	79782	broad.mit.edu	37	3	169578450	169578451	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:169578450_169578451CC>TT	uc003fgc.1	-	3	462_463	c.385_386GG>AA	c.(385-387)GGA>AAA	p.G129K	LRRC31_uc010hwp.1_Intron	NM_024727	NP_079003	Q6UY01	LRC31_HUMAN	leucine rich repeat containing 31	129										ovary(2)|skin(1)	3	all_cancers(22;2.76e-22)|all_epithelial(15;4.73e-27)|all_lung(20;9.24e-17)|Lung NSC(18;3.85e-16)|Ovarian(172;0.000223)|Breast(254;0.197)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00943)			AAGGAGGGTTCCACCTACAAAA	0.45													51	40					0	0	6.4e-05	0	0
PIK3CA	5290	broad.mit.edu	37	3	178947158	178947158	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:178947158G>A	uc003fjk.2	+	18	2751	c.2594G>A	c.(2593-2595)GGC>GAC	p.G865D		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	865	PI3K/PI4K.				epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			TGCAAAGGCGGCTTGAAAGGT	0.423		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			8	14					0	0	0.00307968	0	0
MCF2L2	23101	broad.mit.edu	37	3	182925542	182925542	+	Missense_Mutation	SNP	G	A	A	rs148585637		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:182925542G>A	uc003fli.1	-	23	2656	c.2566C>T	c.(2566-2568)CGT>TGT	p.R856C		NM_015078	NP_055893	Q86YR7	MF2L2_HUMAN	Rho family guanine-nucleotide exchange factor	856	PH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)|large_intestine(2)|breast(1)	5	all_cancers(143;1.26e-12)|Ovarian(172;0.0355)		all cancers(12;3.35e-44)|Epithelial(37;6.48e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			ATTTTATAACGATCCTTGTGA	0.428													22	46					0	0	0.00229938	0	0
EIF4G1	1981	broad.mit.edu	37	3	184035276	184035276	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:184035276C>T	uc003fnp.2	+	5	513	c.315C>T	c.(313-315)ATC>ATT	p.I105I	EIF4G1_uc003fno.1_Intron|EIF4G1_uc010hxw.1_Intron|EIF4G1_uc003fnt.2_Intron|EIF4G1_uc003fnq.2_Silent_p.I18I|EIF4G1_uc003fnr.2_Intron|EIF4G1_uc010hxx.2_Silent_p.I112I|EIF4G1_uc003fns.2_Silent_p.I65I|EIF4G1_uc010hxy.2_Silent_p.I112I|EIF4G1_uc010hxz.1_Silent_p.I18I|EIF4G1_uc003fnv.3_Silent_p.I105I|EIF4G1_uc003fnu.3_Silent_p.I105I|EIF4G1_uc003fnw.2_Silent_p.I112I|EIF4G1_uc003fnx.2_5'Flank|EIF4G1_uc003fny.3_5'Flank	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	105					insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CCTACTACATCCCTGGACAGG	0.587													11	32					0	0	0.00185496	0	0
SENP2	59343	broad.mit.edu	37	3	185331142	185331143	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:185331142_185331143GG>TT	uc003fpn.2	+	10	1050_1051	c.879_880GG>TT	c.(877-882)AAGGGG>AATTGG	p.293_294KG>NW	SENP2_uc011brv.1_Missense_Mutation_p.283_284KG>NW|SENP2_uc011brw.1_Missense_Mutation_p.106_107KG>NW	NM_021627	NP_067640	Q9HC62	SENP2_HUMAN	SUMO1/sentrin/SMT3 specific protease 2	293_294					mRNA transport|protein desumoylation|protein transport|proteolysis|regulation of Wnt receptor signaling pathway|transmembrane transport|Wnt receptor signaling pathway	cytoplasm|nuclear membrane|nuclear pore	protein binding|SUMO-specific protease activity				0	all_cancers(143;1.28e-10)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			GGTGTTCAAAGGGGAAAATTAC	0.317													11	402					0	0	6.4e-05	0	0
DGKG	1608	broad.mit.edu	37	3	186015231	186015231	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:186015231C>T	uc003fqa.2	-	5	889	c.352G>A	c.(352-354)GAG>AAG	p.E118K	DGKG_uc003fqb.2_Missense_Mutation_p.E118K|DGKG_uc003fqc.2_Missense_Mutation_p.E118K|DGKG_uc011brx.1_Missense_Mutation_p.E118K	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	118					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	GCACAGGCCTCGTCTGCTTTG	0.448													32	75					0	0	0.00111076	0	0
MASP1	5648	broad.mit.edu	37	3	187003734	187003734	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:187003734G>A	uc003frh.1	-	2	448	c.116C>T	c.(115-117)TCC>TTC	p.S39F	MASP1_uc003fri.2_Missense_Mutation_p.S39F|MASP1_uc003frj.2_Intron|MASP1_uc003frk.1_Missense_Mutation_p.S39F|MASP1_uc011bse.1_Missense_Mutation_p.S13F	NM_001879	NP_001870	P48740	MASP1_HUMAN	mannan-binding lectin serine protease 1 isoform	39	Interaction with FCN2.|Interaction with MBL2.|Homodimerization (By similarity).|CUB 1.				complement activation, lectin pathway|negative regulation of complement activation|proteolysis	extracellular space	calcium ion binding|calcium-dependent protein binding|protein binding|protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|breast(1)|liver(1)	4	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.49e-18)	GBM - Glioblastoma multiforme(93;0.0366)		ACTGGGATAGGAGTCTGGATA	0.478													21	51					0	0	0.00278032	0	0
LEPREL1	55214	broad.mit.edu	37	3	189706745	189706745	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:189706745C>T	uc011bsk.1	-	4	1294	c.906G>A	c.(904-906)GAG>GAA	p.E302E	LEPREL1_uc003fsg.2_Silent_p.E121E	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	302					collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	GAAGAAAATTCTCGATGGGAG	0.498													22	48					0	0	0.00229938	0	0
ATP13A5	344905	broad.mit.edu	37	3	193068932	193068932	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:193068932C>T	uc011bsq.1	-	7	665	c.665G>A	c.(664-666)GGT>GAT	p.G222D		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	222	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		TTCTATGTAACCTTGAGACAG	0.418													10	35					0	0	0.000673444	0	0
TNK2	10188	broad.mit.edu	37	3	195615303	195615303	+	Missense_Mutation	SNP	G	A	A	rs142416449		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:195615303G>A	uc003fvu.1	-	2	700	c.157C>T	c.(157-159)CGG>TGG	p.R53W	TNK2_uc003fvs.1_Missense_Mutation_p.R85W|TNK2_uc003fvt.1_Missense_Mutation_p.R116W|TNK2_uc010hzw.1_RNA|TNK2_uc003fvv.1_5'Flank|TNK2_uc010hzx.1_Missense_Mutation_p.R67W	NM_005781	NP_005772	Q07912	ACK1_HUMAN	tyrosine kinase, non-receptor, 2 isoform 1	53	SAM-like domain.				positive regulation of peptidyl-tyrosine phosphorylation|protein ubiquitination|small GTPase mediated signal transduction	adherens junction|cytoplasmic vesicle membrane|endosome|nucleus	ATP binding|GTPase inhibitor activity|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			ovary(3)|central_nervous_system(3)|lung(2)|stomach(1)|skin(1)	10	all_cancers(143;6.48e-09)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;1.46e-22)|OV - Ovarian serous cystadenocarcinoma(49;8.3e-19)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;0.000757)	Adenosine triphosphate(DB00171)	CTACCAGGCCGACCCATGCCG	0.597													17	43					0	0	0.00074312	0	0
TM4SF19	116211	broad.mit.edu	37	3	196054427	196054427	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:196054427C>T	uc003fwl.1	-	2	160	c.35G>A	c.(34-36)CGG>CAG	p.R12Q	TM4SF19_uc003fwj.2_RNA|TM4SF19_uc010iad.1_Missense_Mutation_p.R12Q|TM4SF19_uc011btv.1_Missense_Mutation_p.R12Q	NM_138461	NP_612470	Q96DZ7	T4S19_HUMAN	transmembrane 4 L six family member 19	12	Cytoplasmic (Potential).					integral to membrane					0	all_cancers(143;1.19e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;3.94e-24)|all cancers(36;4.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;8.53e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00314)		GGAGCAAGTCCGTGAGCTTGC	0.607													20	54					0	0	0.00152264	0	0
LRRC33	375387	broad.mit.edu	37	3	196387578	196387578	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:196387578C>T	uc003fwv.2	+	3	1168	c.1064C>T	c.(1063-1065)TCC>TTC	p.S355F		NM_198565	NP_940967	Q86YC3	LRC33_HUMAN	leucine rich repeat containing 33 precursor	355	Extracellular (Potential).|LRR 12.					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;8.88e-09)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.9e-23)|all cancers(36;1.76e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00326)		CCTTCCCTCTCCCACCTGAAC	0.602													16	51					0	0	0.00074312	0	0
PDE6B	5158	broad.mit.edu	37	4	650810	650810	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:650810G>A	uc003gap.2	+	9	1308	c.1255G>A	c.(1255-1257)GAG>AAG	p.E419K	PDE6B_uc003gao.3_Missense_Mutation_p.E419K|PDE6B_uc011buy.1_Missense_Mutation_p.E140K|uc003gaq.1_5'Flank	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	419	GAF 2.				cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						GGTTCTCATGGAGGTAAGCAC	0.612													12	35					0	0	0.00400662	0	0
GRK4	2868	broad.mit.edu	37	4	3015443	3015443	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:3015443G>A	uc003ggn.1	+	8	1084	c.629G>A	c.(628-630)GGA>GAA	p.G210E	GRK4_uc003ggo.1_Missense_Mutation_p.G210E|GRK4_uc003ggp.1_Missense_Mutation_p.G178E|GRK4_uc003ggq.1_Missense_Mutation_p.G178E	NM_182982	NP_892027	P32298	GRK4_HUMAN	G protein-coupled receptor kinase 4 isoform	210	Protein kinase.					cell cortex	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		CGAGCCACAGGAAAAATGTAT	0.398													64	174					0	0	0.00361006	0	0
WFS1	7466	broad.mit.edu	37	4	6279305	6279305	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:6279305C>T	uc003giy.2	+	2	289	c.123C>T	c.(121-123)CCC>CCT	p.P41P	WFS1_uc003gix.2_Silent_p.P41P	NM_001145853	NP_001139325	O76024	WFS1_HUMAN	wolframin	41					endoplasmic reticulum calcium ion homeostasis|endoplasmic reticulum unfolded protein response|ER overload response|ER-associated protein catabolic process|glucose homeostasis|kidney development|negative regulation of neuron apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|polyubiquitinated misfolded protein transport|positive regulation of calcium ion transport|positive regulation of growth|positive regulation of protein ubiquitination|positive regulation of proteolysis|protein stabilization|renal water homeostasis|sensory perception of sound|visual perception	dendrite|integral to endoplasmic reticulum membrane	activating transcription factor binding|ATPase binding|transporter activity|ubiquitin protein ligase binding			central_nervous_system(2)	2				Colorectal(103;0.0512)		GCGAAAGGCCCCGAGCACCCG	0.711													38	72					0	0	0.00128727	0	0
CCDC96	257236	broad.mit.edu	37	4	7043099	7043099	+	Missense_Mutation	SNP	G	A	A	rs34275081	byFrequency	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:7043099G>A	uc003gjv.2	-	1	1630	c.1567C>T	c.(1567-1569)CGG>TGG	p.R523W	TADA2B_uc003gjw.3_5'Flank|TADA2B_uc010idi.2_5'Flank	NM_153376	NP_699207	Q2M329	CCD96_HUMAN	coiled-coil domain containing 96	523	Potential.										0						TCCAGGCGCCGGTGAAGCAGT	0.557													22	52					0	0	0.00229938	0	0
SORCS2	57537	broad.mit.edu	37	4	7684486	7684486	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:7684486G>A	uc003gkb.3	+	10	1358	c.1358G>A	c.(1357-1359)GGA>GAA	p.G453E	SORCS2_uc011bwi.1_Missense_Mutation_p.G281E	NM_020777	NP_065828	Q96PQ0	SORC2_HUMAN	VPS10 domain receptor protein SORCS 2 precursor	453	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(1)|central_nervous_system(1)	2						GGGGTGAAAGGAGTCTTCCTG	0.413													7	10					0	0	0.00198382	0	0
ABLIM2	84448	broad.mit.edu	37	4	8089972	8089972	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:8089972C>T	uc003gko.2	-	4	521	c.378G>A	c.(376-378)GGG>GGA	p.G126G	ABLIM2_uc003gkj.3_Silent_p.G126G|ABLIM2_uc003gkm.3_Silent_p.G126G|ABLIM2_uc003gkp.2_Silent_p.G126G|ABLIM2_uc003gkq.2_Silent_p.G126G|ABLIM2_uc003gkr.2_Silent_p.G126G|ABLIM2_uc003gks.3_Silent_p.G126G|ABLIM2_uc011bwl.1_Silent_p.G131G	NM_001130084	NP_001123556	Q6H8Q1	ABLM2_HUMAN	actin binding LIM protein family, member 2	126	LIM zinc-binding 2.				axon guidance|cytoskeleton organization	actin cytoskeleton|cytoplasm|intermediate filament cytoskeleton|nucleus	actin binding|zinc ion binding			pancreas(3)	3						TGCATTCCTTCCCGTTGAAGG	0.652													21	7					0	0	0.00332997	0	0
BOD1L	259282	broad.mit.edu	37	4	13606324	13606324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:13606324G>A	uc003gmz.1	-	10	2317	c.2200C>T	c.(2200-2202)CCA>TCA	p.P734S	BOD1L_uc010idr.1_Missense_Mutation_p.P71S	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	734	Lys-rich.						DNA binding			ovary(5)|breast(1)	6						TCTTCCGATGGAGTTTTCTCT	0.363													21	35					0	0	0.00121646	0	0
PROM1	8842	broad.mit.edu	37	4	16034954	16034954	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:16034954G>A	uc003goo.2	-	4	694	c.482C>T	c.(481-483)TCC>TTC	p.S161F	PROM1_uc003gor.2_Missense_Mutation_p.S161F|PROM1_uc003gos.2_Missense_Mutation_p.S152F|PROM1_uc003got.2_Missense_Mutation_p.S161F|PROM1_uc003gou.2_Missense_Mutation_p.S152F|PROM1_uc003gop.2_Missense_Mutation_p.S152F|PROM1_uc003goq.3_Missense_Mutation_p.S152F|PROM1_uc010iec.1_Missense_Mutation_p.S39F	NM_006017	NP_006008	O43490	PROM1_HUMAN	prominin 1 isoform 1	161	Helical; (Potential).				camera-type eye photoreceptor cell differentiation|photoreceptor cell maintenance|retina layer formation	apical plasma membrane|cell surface|integral to plasma membrane|microvillus membrane|photoreceptor outer segment membrane|plasma membrane	beta-actinin binding|cadherin binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	7						CACCAACAGGGAGATTGCAAA	0.383													34	24					0	0	0.00375469	0	0
CLRN2	645104	broad.mit.edu	37	4	17528501	17528501	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:17528501G>A	uc003gpg.1	+	3	597	c.495G>A	c.(493-495)ACG>ACA	p.T165T		NM_001079827	NP_001073296	A0PK11	CLRN2_HUMAN	clarin 2	165						integral to membrane					0						ACGACCTGACGGAACGAATCG	0.547													22	51					0	0	0.00188189	0	0
SLIT2	9353	broad.mit.edu	37	4	20525790	20525790	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:20525790C>T	uc003gpr.1	+	14	1632	c.1428C>T	c.(1426-1428)TTC>TTT	p.F476F	SLIT2_uc003gps.1_Silent_p.F476F	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	476	LRRCT 2.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						GCAAGAAATTCCGTTGTTCAG	0.473													22	68					0	0	0.00152264	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23830201	23830201	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:23830201C>T	uc003gqs.2	-	5	699	c.579G>A	c.(577-579)GCG>GCA	p.A193A	PPARGC1A_uc003gqt.2_RNA|PPARGC1A_uc011bxp.1_RNA|PPARGC1A_uc010ier.1_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	193					androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				AAATACTCTTCGCTTTATTGC	0.413													26	22					0	0	0.00127121	0	0
SLC34A2	10568	broad.mit.edu	37	4	25677759	25677759	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:25677759C>T	uc003grr.2	+	13	1542	c.1461C>T	c.(1459-1461)ATC>ATT	p.I487I	SLC34A2_uc003grs.2_Silent_p.I486I|SLC34A2_uc010iev.2_Silent_p.I486I	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	487	Helical; Name=M6; (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				TGTTGCAGATCGCCCTGTGCC	0.602													7	14					0	0	0.00307968	0	0
SEL1L3	23231	broad.mit.edu	37	4	25783914	25783914	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:25783914C>T	uc003gru.3	-	15	2559	c.2407G>A	c.(2407-2409)GGA>AGA	p.G803R	SEL1L3_uc003grv.2_Missense_Mutation_p.G210R	NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	803	Sel1-like 6.					integral to membrane	binding				0						TGCAGGACTCCAAGATTGTAT	0.448													21	74					0	0	0.00395357	0	0
CCKAR	886	broad.mit.edu	37	4	26483310	26483310	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:26483310G>A	uc003gse.1	-	5	1390	c.1237C>T	c.(1237-1239)CTG>TTG	p.L413L		NM_000730	NP_000721	P32238	CCKAR_HUMAN	cholecystokinin A receptor	413	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|elevation of cytosolic calcium ion concentration|response to nutrient	integral to plasma membrane	cholecystokinin receptor activity			lung(3)|pancreas(1)	4		Breast(46;0.0503)			Ceruletide(DB00403)	AACCTGGACAGAGAGGCTCCT	0.577													35	71					0	0	0.00375469	0	0
CCKAR	886	broad.mit.edu	37	4	26483788	26483788	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:26483788C>T	uc003gse.1	-	5	912	c.759G>A	c.(757-759)AGG>AGA	p.R253R		NM_000730	NP_000721	P32238	CCKAR_HUMAN	cholecystokinin A receptor	253	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|elevation of cytosolic calcium ion concentration|response to nutrient	integral to plasma membrane	cholecystokinin receptor activity			lung(3)|pancreas(1)	4		Breast(46;0.0503)			Ceruletide(DB00403)	TGCTAGGTTTCCTTTCTGGGT	0.582													17	36					0	0	0.00074312	0	0
CCKAR	886	broad.mit.edu	37	4	26491787	26491787	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:26491787G>A	uc003gse.1	-	1	256	c.103C>T	c.(103-105)CCT>TCT	p.P35S		NM_000730	NP_000721	P32238	CCKAR_HUMAN	cholecystokinin A receptor	35	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|elevation of cytosolic calcium ion concentration|response to nutrient	integral to plasma membrane	cholecystokinin receptor activity			lung(3)|pancreas(1)	4		Breast(46;0.0503)			Ceruletide(DB00403)	CCTTTGGAAGGACGGGGCTGA	0.438													11	31					0	0	0.00136819	0	0
ARAP2	116984	broad.mit.edu	37	4	36069745	36069745	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:36069745G>A	uc003gsq.1	-	33	5237	c.4899C>T	c.(4897-4899)TTC>TTT	p.F1633F	ARAP2_uc003gso.2_Intron	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1633					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						CCAGGCAGTTGAAACTCCGAT	0.517													24	51					0	0	0.00332997	0	0
ARAP2	116984	broad.mit.edu	37	4	36212334	36212334	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:36212334C>T	uc003gsq.1	-	6	1503	c.1165G>A	c.(1165-1167)GAG>AAG	p.E389K	ARAP2_uc003gsr.1_Missense_Mutation_p.E389K	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	389					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						ACCTTGTCCTCGCTTATTTTC	0.338													20	52					0	0	0.00121646	0	0
TMEM156	80008	broad.mit.edu	37	4	38995404	38995404	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:38995404C>T	uc003gto.2	-	3	681	c.573G>A	c.(571-573)CCG>CCA	p.P191P	TMEM156_uc010ifj.2_Silent_p.P191P	NM_024943	NP_079219	Q8N614	TM156_HUMAN	transmembrane protein 156	191	Extracellular (Potential).					integral to membrane				skin(1)	1						TACAATCATTCGGGTATTCCA	0.353													32	64					0	0	0.00178596	0	0
TMEM156	80008	broad.mit.edu	37	4	39000348	39000348	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:39000348G>A	uc003gto.2	-	2	378	c.270C>T	c.(268-270)ATC>ATT	p.I90I	TMEM156_uc010ifj.2_Silent_p.I90I	NM_024943	NP_079219	Q8N614	TM156_HUMAN	transmembrane protein 156	90	Extracellular (Potential).					integral to membrane				skin(1)	1						ATTCACCTGTGATGTCTTGGC	0.373													6	12					0	0	0.00198382	0	0
WDR19	57728	broad.mit.edu	37	4	39247026	39247026	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:39247026C>T	uc003gtv.2	+	24	2837	c.2683C>T	c.(2683-2685)CCT>TCT	p.P895S	WDR19_uc011byi.1_Missense_Mutation_p.P735S|WDR19_uc003gtw.1_Missense_Mutation_p.P492S	NM_025132	NP_079408	Q8NEZ3	WDR19_HUMAN	WD repeat domain 19	895	TPR 4.				cell projection organization	microtubule basal body|motile cilium|photoreceptor connecting cilium	binding			large_intestine(1)	1						CGTTTCTTCTCCTAAGATCCA	0.408													8	23					0	0	0.000673444	0	0
GRXCR1	389207	broad.mit.edu	37	4	42895554	42895554	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:42895554G>A	uc003gwt.2	+	1	271	c.271G>A	c.(271-273)GGT>AGT	p.G91S		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	91			G -> V.		cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						CAGTGAGAAGGGTTTTGGTAC	0.453													23	18					0	0	0.00332997	0	0
YIPF7	285525	broad.mit.edu	37	4	44626725	44626725	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:44626725G>A	uc010ifx.1	-	5	590	c.573C>T	c.(571-573)AAC>AAT	p.N191N		NM_182592	NP_872398	Q8N8F6	YIPF7_HUMAN	Yip1 domain family, member 7	191	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane					0						AGCTCATCAGGTTCAGCAAGG	0.512													4	15					0	0	0.00024832	0	0
YIPF7	285525	broad.mit.edu	37	4	44652082	44652082	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:44652082G>A	uc010ifx.1	-	2	125	c.108C>T	c.(106-108)TAC>TAT	p.Y36Y	YIPF7_uc010ify.1_Silent_p.Y36Y	NM_182592	NP_872398	Q8N8F6	YIPF7_HUMAN	Yip1 domain family, member 7	36						endoplasmic reticulum membrane|integral to membrane					0						AATTAGATTGGTAAAAATCAG	0.284													8	4					0	0	0.000978159	0	0
GABRG1	2565	broad.mit.edu	37	4	46043158	46043158	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:46043158G>A	uc003gxb.2	-	9	1397	c.1245C>T	c.(1243-1245)TTC>TTT	p.F415F		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	415	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		AGCAACAGAAGAAGCTGGCAC	0.413													6	29					0	0	0.00307968	0	0
CNGA1	1259	broad.mit.edu	37	4	47939467	47939467	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:47939467T>A	uc003gxt.3	-	11	1310	c.1044A>T	c.(1042-1044)AAA>AAT	p.K348N	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Missense_Mutation_p.K417N	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	348	Cytoplasmic (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						TGTATACGTATTTTCTAGCCA	0.413													44	76					0	0	0.00285205	0	0
TEC	7006	broad.mit.edu	37	4	48147207	48147207	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:48147207G>A	uc003gxz.2	-	14	1450	c.1359C>T	c.(1357-1359)TTC>TTT	p.F453F		NM_003215	NP_003206	P42680	TEC_HUMAN	tec protein tyrosine kinase	453	Protein kinase.				intracellular protein kinase cascade	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)	9						TCTGTCGGAGGAAATTCAGAA	0.473													29	64					0	0	0.00127121	0	0
PDGFRA	5156	broad.mit.edu	37	4	55129979	55129979	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:55129979C>T	uc003han.3	+	4	844	c.513C>T	c.(511-513)TCC>TCT	p.S171S	PDGFRA_uc003haa.2_Intron|PDGFRA_uc003hal.2_Silent_p.S171S|PDGFRA_uc010igq.1_Silent_p.S65S|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	171	Extracellular (Potential).|Ig-like C2-type 2.				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	TACCTGCCTCCTACGACAGCA	0.502			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			12	41					0	0	0.00136819	0	0
POLR2B	5431	broad.mit.edu	37	4	57860960	57860961	+	Missense_Mutation	DNP	TC	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:57860960_57860961TC>AA	uc003hcl.1	+	5	547_548	c.504_505TC>AA	c.(502-507)GATCGT>GAAAGT	p.168_169DR>ES	POLR2B_uc011cae.1_Missense_Mutation_p.161_162DR>ES|POLR2B_uc011caf.1_Missense_Mutation_p.93_94DR>ES	NM_000938	NP_000929	P30876	RPB2_HUMAN	DNA directed RNA polymerase II polypeptide B	168_169					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(2)	2	Glioma(25;0.08)|all_neural(26;0.181)					GCTTGACAGATCGTGATCTTTG	0.337													32	35					0	0	6.4e-05	0	0
POLR2B	5431	broad.mit.edu	37	4	57896476	57896476	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:57896476G>A	uc003hcl.1	+	24	3389	c.3346G>A	c.(3346-3348)GTT>ATT	p.V1116I	POLR2B_uc011cae.1_Missense_Mutation_p.V1109I|POLR2B_uc011caf.1_Missense_Mutation_p.V1041I|POLR2B_uc003hcm.1_Missense_Mutation_p.V609I	NM_000938	NP_000929	P30876	RPB2_HUMAN	DNA directed RNA polymerase II polypeptide B	1116					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(2)	2	Glioma(25;0.08)|all_neural(26;0.181)					TCCATATCAGGTTCATGTTTG	0.458													33	26					0	0	0.00283554	0	0
LPHN3	23284	broad.mit.edu	37	4	62813848	62813848	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:62813848T>A	uc010ihh.2	+	14	2628	c.2455T>A	c.(2455-2457)TCA>ACA	p.S819T	LPHN3_uc003hcq.3_Missense_Mutation_p.S819T|LPHN3_uc003hct.2_Missense_Mutation_p.S212T	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	806	GPS.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						CCCTAACTGTTCATTTTGGAG	0.378													6	19					0	0	0.00116845	0	0
TMPRSS11D	9407	broad.mit.edu	37	4	68704004	68704004	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:68704004G>A	uc003hdq.2	-	5	426	c.361C>T	c.(361-363)CAA>TAA	p.Q121*	LOC550112_uc003hdl.3_Intron|TMPRSS11D_uc011caj.1_Nonsense_Mutation_p.Q4*	NM_004262	NP_004253	O60235	TM11D_HUMAN	transmembrane protease, serine 11D	121	SEA.|Extracellular (Potential).				proteolysis|respiratory gaseous exchange	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						CTAGTGAATTGAAATTTCATG	0.333													7	31					0	0	0.00307968	0	0
TMPRSS11F	389208	broad.mit.edu	37	4	68935687	68935687	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:68935687G>A	uc003hdt.1	-	6	602	c.553C>T	c.(553-555)CGC>TGC	p.R185C	LOC550112_uc003hdl.3_Intron|uc011cak.1_Intron	NM_207407	NP_997290	Q6ZWK6	TM11F_HUMAN	transmembrane protease, serine 11F	185	Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						TGGAACTTACGACTGTTGAGA	0.318													107	75					0	0	0.00361006	0	0
TMPRSS11B	132724	broad.mit.edu	37	4	69097034	69097034	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:69097034G>A	uc003hdw.3	-	7	709	c.573C>T	c.(571-573)TCC>TCT	p.S191S		NM_182502	NP_872308	Q86T26	TM11B_HUMAN	transmembrane protease, serine 11B	191	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						CCCCCTCCAGGGAGCTTTTTC	0.498													18	26					0	0	0.00121646	0	0
UGT2B28	54490	broad.mit.edu	37	4	70156526	70156526	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:70156526C>T	uc003hej.2	+	5	1309	c.1307C>T	c.(1306-1308)CCT>CTT	p.P436L	UGT2B28_uc010ihr.2_Intron	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	436					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	ATTAATGATCCTTCGTGAGTA	0.398													9	5					0	0	0.000442599	0	0
UGT2A1	10941	broad.mit.edu	37	4	70512659	70512659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:70512659C>T	uc003hem.3	-	1	767	c.704G>A	c.(703-705)AGT>AAT	p.S235N	UGT2A1_uc011caq.1_Missense_Mutation_p.S235N|UGT2A1_uc010ihu.2_Missense_Mutation_p.S235N|UGT2A1_uc010iht.2_Missense_Mutation_p.S235N	NM_006798	NP_006789	Q9Y4X1	UD2A1_HUMAN	UDP glucuronosyltransferase 2 family,	235	Extracellular (Potential).				detection of chemical stimulus|sensory perception of smell	integral to membrane	glucuronosyltransferase activity|glucuronosyltransferase activity			ovary(1)	1						TAAAGCTTTACTATAGTATGA	0.323													9	19					0	0	0.000274275	0	0
AMBN	258	broad.mit.edu	37	4	71467169	71467169	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:71467169T>G	uc003hfl.2	+	6	404	c.329T>G	c.(328-330)CTC>CGC	p.L110R		NM_016519	NP_057603	Q9NP70	AMBN_HUMAN	ameloblastin precursor	110					bone mineralization|cell adhesion|cell proliferation|odontogenesis of dentine-containing tooth	proteinaceous extracellular matrix	growth factor activity|structural constituent of tooth enamel			ovary(3)|skin(1)	4			Lung(101;0.235)			CCCCCACCTCTCCCATCACAG	0.438											OREG0016218	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	49	113					0	0	0.00361006	0	0
RUFY3	22902	broad.mit.edu	37	4	71630223	71630223	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:71630223C>T	uc003hfq.2	+	4	1097	c.502C>T	c.(502-504)CGT>TGT	p.R168C	RUFY3_uc003hfp.3_Missense_Mutation_p.R228C|RUFY3_uc011cax.1_Missense_Mutation_p.R186C|RUFY3_uc003hfr.2_Missense_Mutation_p.R168C|RUFY3_uc011cay.1_Missense_Mutation_p.R104C	NM_014961	NP_055776	Q7L099	RUFY3_HUMAN	RUN and FYVE domain containing 3 isoform 2	168	RUN.				negative regulation of axonogenesis	filopodium|growth cone					0		all_hematologic(202;0.248)	Lung(101;0.235)			AGCCTGGCTTCGTTTGGCATT	0.368													27	70					0	0	0.00178596	0	0
SLC4A4	8671	broad.mit.edu	37	4	72316957	72316957	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:72316957C>T	uc003hfy.2	+	11	1378	c.1261C>T	c.(1261-1263)CAT>TAT	p.H421Y	SLC4A4_uc010iic.2_Missense_Mutation_p.H421Y|SLC4A4_uc010iib.2_Missense_Mutation_p.H421Y|SLC4A4_uc003hfz.2_Missense_Mutation_p.H421Y|SLC4A4_uc003hgc.3_Missense_Mutation_p.H377Y|SLC4A4_uc010iid.2_5'UTR|SLC4A4_uc003hga.2_Missense_Mutation_p.H299Y|SLC4A4_uc003hgb.3_Missense_Mutation_p.H377Y	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	421	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			GGATACGCCCCATGATGGAGG	0.438													16	50					0	0	0.00074312	0	0
AFP	174	broad.mit.edu	37	4	74303947	74303947	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:74303947A>T	uc003hgz.1	+	3	241	c.194A>T	c.(193-195)AAA>ATA	p.K65I	AFP_uc003hha.1_Missense_Mutation_p.K65I	NM_001134	NP_001125	P02771	FETA_HUMAN	alpha-fetoprotein precursor	65	Albumin 1.				transport		metal ion binding			ovary(1)	1	Breast(15;0.00102)		Epithelial(6;2.42e-05)|all cancers(17;0.000268)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			GAAGTAAGCAAAATGGTGAAA	0.284									Alpha-Fetoprotein_Hereditary_Persistence_of				16	29					0	0	0.00400662	0	0
ANKRD56	345079	broad.mit.edu	37	4	77816833	77816833	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:77816833C>T	uc003hki.2	-	1	2170	c.2170G>A	c.(2170-2172)GGA>AGA	p.G724R		NM_001029870	NP_001025041	A6NEL2	ANR56_HUMAN	ankyrin repeat domain 56	724											0						CGAGGAGCTCCCAACAGCTGC	0.502													89	159					0	0	0.00361006	0	0
MRPL1	65008	broad.mit.edu	37	4	78808408	78808408	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:78808408G>T	uc003hku.2	+	5	719	c.521G>T	c.(520-522)GGA>GTA	p.G174V	MRPL1_uc010iji.1_Missense_Mutation_p.G97V	NM_020236	NP_064621	Q9BYD6	RM01_HUMAN	mitochondrial ribosomal protein L1 precursor	174							RNA binding				0						GAAGAAAATGGAGCTGCATTT	0.328													12	32					4.3838e-07	1.19719e-06	0.00185496	1	0
FRAS1	80144	broad.mit.edu	37	4	79173594	79173594	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:79173594C>T	uc003hlb.2	+	5	798	c.358C>T	c.(358-360)CAT>TAT	p.H120Y	FRAS1_uc003hkw.2_Missense_Mutation_p.H120Y|FRAS1_uc003hky.1_5'UTR|FRAS1_uc003hkz.2_5'Flank	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	120	VWFC 2.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CTCTTGCAATCATGGGGAAGT	0.517													17	37					0	0	0.000958276	0	0
FRAS1	80144	broad.mit.edu	37	4	79308840	79308840	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:79308840G>A	uc003hlb.2	+	29	4400	c.3960G>A	c.(3958-3960)GTG>GTA	p.V1320V	FRAS1_uc003hkw.2_Silent_p.V1320V	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1319	CSPG 3.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TGTTCCAAGTGAAGACCGTGC	0.433													12	12					0	0	0.00244969	0	0
FRAS1	80144	broad.mit.edu	37	4	79429917	79429917	+	Silent	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:79429917A>G	uc003hlb.2	+	63	9977	c.9537A>G	c.(9535-9537)GAA>GAG	p.E3179E	FRAS1_uc003hlc.1_Silent_p.E181E	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3174	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						ACCATGTGGAAGAAGTTACCA	0.522													8	25					0	0	0.00307968	0	0
PRDM8	56978	broad.mit.edu	37	4	81124550	81124550	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:81124550G>A	uc010ijo.2	+	8	2773	c.1934G>A	c.(1933-1935)AGG>AAG	p.R645K	PRDM8_uc003hmb.3_Missense_Mutation_p.R645K|PRDM8_uc003hmc.3_Missense_Mutation_p.R645K	NM_020226	NP_064611	Q9NQV8	PRDM8_HUMAN	PR domain containing 8	645	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TACCATATGAGGTCGCACCAC	0.567													7	17					0	0	0.00307968	0	0
C4orf22	255119	broad.mit.edu	37	4	81866028	81866028	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:81866028G>A	uc003hmf.2	+	5	590	c.541G>A	c.(541-543)GAT>AAT	p.D181N	C4orf22_uc010ijp.2_Missense_Mutation_p.D198N	NM_152770	NP_689983	Q6V702	CD022_HUMAN	hypothetical protein LOC255119	181										skin(2)	2						AGTGATTGCCGATAATCCAGA	0.323													25	21					0	0	0.000878237	0	0
TMEM150C	441027	broad.mit.edu	37	4	83411342	83411342	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:83411342C>T	uc003hmy.1	-	7	491	c.413G>A	c.(412-414)GGA>GAA	p.G138E	TMEM150C_uc011ccj.1_Missense_Mutation_p.G168E	NM_001080506	NP_001073975	B9EJG8	T150C_HUMAN	transmembrane protein 150C	138	Helical; (Potential).					integral to membrane				ovary(1)	1						TGTGCCAAATCCAAAGGTCAA	0.463													111	70					0	0	0.00361006	0	0
HELQ	113510	broad.mit.edu	37	4	84352866	84352866	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:84352866T>G	uc003hom.2	-	11	2425	c.2246A>C	c.(2245-2247)GAA>GCA	p.E749A	HELQ_uc010ikb.2_Missense_Mutation_p.E682A|HELQ_uc003hol.3_RNA|HELQ_uc010ikc.2_RNA	NM_133636	NP_598375	Q8TDG4	HELQ_HUMAN	DNA helicase HEL308	749	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|breast(1)|skin(1)	3						CTTGGTGAATTCCTGAACAAG	0.303								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					13	42					0	0	0.00074312	0	0
WDFY3	23001	broad.mit.edu	37	4	85611810	85611810	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:85611810G>A	uc003hpd.2	-	61	9620	c.9212C>T	c.(9211-9213)ACT>ATT	p.T3071I		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	3071						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		TTCATAAACAGTCATGGCCTA	0.478													14	23					0	0	0.00316338	0	0
PKD2	5311	broad.mit.edu	37	4	88973229	88973229	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:88973229C>T	uc003hre.2	+	7	1701	c.1635C>T	c.(1633-1635)TTC>TTT	p.F545F	PKD2_uc011cdf.1_5'UTR|PKD2_uc011cdg.1_5'UTR|PKD2_uc011cdh.1_5'UTR	NM_000297	NP_000288	Q13563	PKD2_HUMAN	polycystin 2	545	Extracellular (Potential).					basal cortex|basal plasma membrane|endoplasmic reticulum|integral to membrane|lamellipodium|microtubule basal body	calcium ion binding|cytoskeletal protein binding|voltage-gated chloride channel activity|voltage-gated sodium channel activity			skin(1)	1		Hepatocellular(203;0.114)|Acute lymphoblastic leukemia(40;0.221)		OV - Ovarian serous cystadenocarcinoma(123;9.98e-10)|COAD - Colon adenocarcinoma(81;0.0237)		AAAATACTTTCCCCAACTTTG	0.353													47	24					0	0	0.00361006	0	0
ABCG2	9429	broad.mit.edu	37	4	89039399	89039399	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:89039399C>T	uc003hrg.2	-	7	1196	c.703G>A	c.(703-705)GGA>AGA	p.G235R	ABCG2_uc003hrh.2_Missense_Mutation_p.G235R|ABCG2_uc003hrf.2_Missense_Mutation_p.G105R	NM_004827	NP_004818	Q9UNQ0	ABCG2_HUMAN	ATP-binding cassette, sub-family G, member 2	235	ABC transporter.|Cytoplasmic (Potential).				cellular iron ion homeostasis|urate metabolic process	integral to membrane|plasma membrane	ATP binding|heme transporter activity|protein homodimerization activity|xenobiotic-transporting ATPase activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;7.02e-05)	Imatinib(DB00619)|Mitoxantrone(DB01204)|Nicardipine(DB00622)|Nitrendipine(DB01054)|Rosuvastatin(DB01098)|Saquinavir(DB01232)|Topotecan(DB01030)	ATTGTTCGTCCCTGCTTAGAC	0.373													18	41					0	0	0.00278032	0	0
HERC3	8916	broad.mit.edu	37	4	89628082	89628082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:89628082G>A	uc003hrw.1	+	26	3290	c.3124G>A	c.(3124-3126)GAC>AAC	p.D1042N	HERC3_uc011cdn.1_Missense_Mutation_p.D924N|HERC3_uc011cdo.1_Missense_Mutation_p.D486N|FAM13AOS_uc003hry.1_5'Flank	NM_014606	NP_055421	Q15034	HERC3_HUMAN	hect domain and RLD 3	1042	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasmic membrane-bounded vesicle	ubiquitin-protein ligase activity			lung(2)|prostate(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(123;0.000319)		CCAGGCCCTTGACAACTATGA	0.517											OREG0016265	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	25					0	0	0.00244969	0	0
MMRN1	22915	broad.mit.edu	37	4	90849068	90849068	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:90849068G>A	uc003hst.2	+	5	1149	c.1078G>A	c.(1078-1080)GAA>AAA	p.E360K	MMRN1_uc010iku.2_Missense_Mutation_p.E326K|MMRN1_uc011cds.1_Missense_Mutation_p.E102K	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	360	Potential.				cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		CTCCTCCCTAGAAGGAAAAGT	0.338													26	64					0	0	0.000878237	0	0
BANK1	55024	broad.mit.edu	37	4	102946546	102946546	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:102946546C>T	uc003hvy.3	+	9	1748	c.1474C>T	c.(1474-1476)CCT>TCT	p.P492S	BANK1_uc003hvx.3_Missense_Mutation_p.P477S|BANK1_uc010ill.2_Missense_Mutation_p.P359S|BANK1_uc003hvz.3_Missense_Mutation_p.P462S	NM_017935	NP_060405	Q8NDB2	BANK1_HUMAN	B-cell scaffold protein with ankyrin repeats 1	492					B cell activation					ovary(2)|skin(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.7e-07)		TGTGTTCATTCCTGGTGCTGA	0.498													27	17					0	0	0.000720815	0	0
NHEDC1	150159	broad.mit.edu	37	4	103870499	103870499	+	Silent	SNP	G	A	A	rs78972166		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:103870499G>A	uc003hww.2	-	4	419	c.297C>T	c.(295-297)TTC>TTT	p.F99F	NHEDC1_uc003hwu.2_Silent_p.F99F|NHEDC1_uc010ilm.2_5'UTR|NHEDC1_uc003hwv.2_Intron|NHEDC1_uc011cev.1_Intron	NM_139173	NP_631912	Q4ZJI4	NHDC1_HUMAN	Na+/H+ exchanger domain containing 1 isoform 1	99	Helical; (Potential).					integral to membrane	solute:hydrogen antiporter activity			ovary(1)|skin(1)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;1.5e-08)		AAAAAATAATGAACAACCCAA	0.348													22	52					0	0	0.00332997	0	0
CENPE	1062	broad.mit.edu	37	4	104067125	104067125	+	Missense_Mutation	SNP	C	T	T	rs113334734	byFrequency	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:104067125C>T	uc003hxb.1	-	30	4364	c.4274G>A	c.(4273-4275)GGA>GAA	p.G1425E	CENPE_uc003hxc.1_Missense_Mutation_p.G1400E	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	1425	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TTTGGACAATCCGAGCATTTC	0.368													33	98					0	0	0.00283554	0	0
TACR3	6870	broad.mit.edu	37	4	104640632	104640632	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:104640632G>A	uc003hxe.1	-	1	344	c.201C>T	c.(199-201)CCC>CCT	p.P67P		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	67	Extracellular (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		AGGGCTGGGAGGGCGCGGGGG	0.672													22	36					0	0	0.00229938	0	0
ENPEP	2028	broad.mit.edu	37	4	111397858	111397858	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:111397858C>T	uc003iab.3	+	1	630	c.288C>T	c.(286-288)TTC>TTT	p.F96F		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	96	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	TGCCGGACTTCGTCAACCCAG	0.627													25	62					0	0	0.00395357	0	0
ALPK1	80216	broad.mit.edu	37	4	113348783	113348783	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:113348783G>A	uc003iap.3	+	9	1036	c.757G>A	c.(757-759)GAT>AAT	p.D253N	ALPK1_uc003ian.3_Missense_Mutation_p.D253N|ALPK1_uc011cfx.1_Missense_Mutation_p.D175N|ALPK1_uc003iao.3_RNA|ALPK1_uc010imo.2_Missense_Mutation_p.D81N	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	253							ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		GAGCAAGAACGATTATGAAAA	0.393													14	31					0	0	0.00244969	0	0
NDST4	64579	broad.mit.edu	37	4	115767138	115767138	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:115767138G>A	uc003ibu.2	-	10	2635	c.1956C>T	c.(1954-1956)TTC>TTT	p.F652F	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	652	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		ATGGTGTAGGGAAAAAGTCCA	0.358													27	16					0	0	0.00106085	0	0
NDST4	64579	broad.mit.edu	37	4	115858526	115858526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:115858526G>A	uc003ibu.2	-	5	2034	c.1355C>T	c.(1354-1356)CCA>CTA	p.P452L	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	452	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		TTTCAGATGTGGATATTCTTC	0.468													46	26					0	0	0.00361006	0	0
SYNPO2	171024	broad.mit.edu	37	4	119948498	119948498	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:119948498C>T	uc003icm.3	+	3	1170	c.974C>T	c.(973-975)TCC>TTC	p.S325F	SYNPO2_uc010ina.2_Missense_Mutation_p.S325F|SYNPO2_uc010inb.2_Missense_Mutation_p.S325F|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.S253F	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	325						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						TCTCTGGTATCCTTTGCCGTC	0.557													11	29					0	0	0.00136819	0	0
SYNPO2	171024	broad.mit.edu	37	4	119979005	119979005	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:119979005C>T	uc010inb.2	+	5	3898	c.3702C>T	c.(3700-3702)TCC>TCT	p.S1234S	SYNPO2_uc011cgh.1_3'UTR|SYNPO2_uc010inc.2_Silent_p.S1104S	NM_133477	NP_597734	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform a	Error:Variant_position_missing_in_Q9UMS6_after_alignment						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						CAATCATGTCCATGGAAACCA	0.433													24	37					0	0	0.00278032	0	0
KIAA1109	84162	broad.mit.edu	37	4	123147970	123147970	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:123147970C>T	uc003ieh.2	+	22	2947	c.2902C>T	c.(2902-2904)CGT>TGT	p.R968C	KIAA1109_uc003iei.1_Missense_Mutation_p.R721C|KIAA1109_uc010ins.1_Missense_Mutation_p.R311C|KIAA1109_uc003iej.1_3'UTR	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	968					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TGGAATTGATCGTCGGTTCTG	0.338													36	34					0	0	0.00375469	0	0
KIAA1109	84162	broad.mit.edu	37	4	123207806	123207806	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:123207806C>T	uc003ieh.2	+	51	9193	c.9148C>T	c.(9148-9150)CCC>TCC	p.P3050S	KIAA1109_uc003iel.1_Missense_Mutation_p.P985S	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	3050					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TCTTAACCTTCCCCCTGTTAC	0.393													27	81					0	0	0.00127121	0	0
BBS12	166379	broad.mit.edu	37	4	123663614	123663614	+	Silent	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:123663614T>G	uc003ieu.2	+	2	760	c.567T>G	c.(565-567)CTT>CTG	p.L189L		NM_152618	NP_689831	Q6ZW61	BBS12_HUMAN	Bardet-Biedl syndrome 12	189					cellular protein metabolic process	cilium	ATP binding			ovary(2)	2						TTTCCAACCTTTCTGGGAGAC	0.403									Bardet-Biedl_syndrome				22	49					0	0	0.00229938	0	0
FAT4	79633	broad.mit.edu	37	4	126373056	126373056	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:126373056C>T	uc003ifj.3	+	9	10885	c.10885C>T	c.(10885-10887)CCC>TCC	p.P3629S	FAT4_uc011cgp.1_Missense_Mutation_p.P1927S|FAT4_uc003ifi.1_Missense_Mutation_p.P1107S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3629	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TAACTTGTTTCCCGGTGGGAT	0.443													25	16					0	0	0.000878237	0	0
PCDH18	54510	broad.mit.edu	37	4	138450973	138450973	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:138450973C>T	uc003ihe.3	-	1	2657	c.2270G>A	c.(2269-2271)GGG>GAG	p.G757E	PCDH18_uc003ihf.3_Missense_Mutation_p.G750E|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.G537E|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	757	Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TGTGATGTCCCCTTTGTGAAT	0.493													15	20					0	0	0.00400662	0	0
PCDH18	54510	broad.mit.edu	37	4	138453134	138453134	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:138453134C>T	uc003ihe.3	-	1	496	c.109G>A	c.(109-111)GAA>AAA	p.E37K	PCDH18_uc003ihf.3_Missense_Mutation_p.E30K|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Intron|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	37	Extracellular (Potential).|Cadherin 1.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					ACCCTCTGTTCCTCATAAATC	0.383													22	49					0	0	0.00188189	0	0
TBC1D9	23158	broad.mit.edu	37	4	141578692	141578692	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:141578692G>A	uc010ioj.2	-	12	2468	c.2196C>T	c.(2194-2196)ACC>ACT	p.T732T		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	732						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				TTCCCAAAACGGTCATGGCCT	0.423													69	140					0	0	0.00361006	0	0
TBC1D9	23158	broad.mit.edu	37	4	141600298	141600298	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:141600298G>A	uc010ioj.2	-	5	921	c.649C>T	c.(649-651)CTG>TTG	p.L217L		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	217						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				ACATCAGGCAGAAGCAGGGTG	0.493													23	54					0	0	0.00106085	0	0
RNF150	57484	broad.mit.edu	37	4	142053480	142053480	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:142053480C>T	uc003iio.1	-	1	1137	c.483G>A	c.(481-483)GCG>GCA	p.A161A	RNF150_uc010iok.1_Silent_p.A161A|RNF150_uc003iip.1_Silent_p.A161A	NM_020724	NP_065775	Q9ULK6	RN150_HUMAN	ring finger protein 150 precursor	161	Extracellular (Potential).|PA.					integral to membrane	zinc ion binding			ovary(1)	1	all_hematologic(180;0.162)					GCCACTCACCCGCGTGGGGCA	0.667													3	4					0	0	6.4e-05	0	0
POU4F2	5458	broad.mit.edu	37	4	147561842	147561842	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:147561842C>A	uc003ikv.2	+	2	1360	c.1112C>A	c.(1111-1113)TCC>TAC	p.S371Y		NM_004575	NP_004566	Q12837	PO4F2_HUMAN	Brn3b POU domain transcription factor	371	Homeobox.				estrogen receptor signaling pathway|MAPKKK cascade|negative regulation of transcription from RNA polymerase II promoter	nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			breast(1)	1	all_hematologic(180;0.151)					CCTCGGCCCTCCTCTGAAAAG	0.562													30	59					2.80507e-11	7.67993e-11	0.0024448	1	0
EDNRA	1909	broad.mit.edu	37	4	148461043	148461043	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:148461043C>T	uc003iky.2	+	6	1667	c.975C>T	c.(973-975)AGC>AGT	p.S325S	EDNRA_uc011cid.1_Silent_p.S100S|EDNRA_uc010ipf.1_RNA|EDNRA_uc010ipg.1_Silent_p.S216S	NM_001957	NP_001948	P25101	EDNRA_HUMAN	endothelin receptor type A isoform a precursor	325	Helical; Name=6; (Potential).				activation of adenylate cyclase activity|artery smooth muscle contraction|cell proliferation|glucose transport|respiratory gaseous exchange	integral to plasma membrane	endothelin-A receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)|breast(1)	2	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.154)	Bosentan(DB00559)	TTCATTTAAGCCGTATATTGA	0.383													43	81					0	0	0.00222228	0	0
DCLK2	166614	broad.mit.edu	37	4	151119159	151119159	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:151119159C>T	uc003ilm.3	+	4	965	c.865C>T	c.(865-867)CGT>TGT	p.R289C	DCLK2_uc003iln.3_Missense_Mutation_p.R289C|DCLK2_uc003ilo.3_Missense_Mutation_p.R289C|DCLK2_uc003ilp.3_RNA	NM_001040260	NP_001035350	Q8N568	DCLK2_HUMAN	doublecortin-like kinase 2 isoform a	289					intracellular signal transduction	cytoplasm|cytoskeleton	ATP binding|protein serine/threonine kinase activity			ovary(3)	3	all_hematologic(180;0.151)					TCTAGAATGTCGTGTCCTGAA	0.408													13	39					0	0	0.00185496	0	0
LRBA	987	broad.mit.edu	37	4	151356749	151356749	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:151356749C>A	uc010ipj.2	-	47	7540	c.7066G>T	c.(7066-7068)GAT>TAT	p.D2356Y	LRBA_uc010ipi.2_Intron|LRBA_uc003ils.3_Missense_Mutation_p.D246Y|LRBA_uc003ilt.3_Missense_Mutation_p.D1004Y|LRBA_uc003ilu.3_Missense_Mutation_p.D2345Y	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	2356	BEACH.					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					ACCTTAATATCAGAGGTATCA	0.358													66	44					4.09171e-25	1.12474e-24	0.00361006	1	0
TIGD4	201798	broad.mit.edu	37	4	153690662	153690662	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:153690662A>T	uc003imy.2	-	2	2277	c.1495T>A	c.(1495-1497)TTA>ATA	p.L499I		NM_145720	NP_663772	Q8IY51	TIGD4_HUMAN	tigger transposable element derived 4	499					regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	chromatin binding|DNA binding			ovary(1)	1	all_hematologic(180;0.093)					AGGTCTGCTAAAGAATTTTGA	0.294													14	35					0	0	0.00244969	0	0
FGA	2243	broad.mit.edu	37	4	155505773	155505773	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:155505773C>T	uc003iod.1	-	6	2162	c.2104G>A	c.(2104-2106)GAG>AAG	p.E702K		NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	702	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	CCTTCCCCCTCGTCATTCAGG	0.488													22	50					0	0	0.00229938	0	0
NPY2R	4887	broad.mit.edu	37	4	156136174	156136174	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:156136174G>A	uc003ioq.2	+	2	1578	c.1083G>A	c.(1081-1083)AAG>AAA	p.K361K	NPY2R_uc003ior.2_Silent_p.K361K	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	361	Cytoplasmic (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity	p.K361R(1)		lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				AGGCTAAAAAGAACCTGGAGG	0.483													20	59					0	0	0.00188189	0	0
MAP9	79884	broad.mit.edu	37	4	156268978	156268978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:156268978G>A	uc003ios.2	-	14	2165	c.1901C>T	c.(1900-1902)CCG>CTG	p.P634L	MAP9_uc011cin.1_Missense_Mutation_p.P609L	NM_001039580	NP_001034669	Q49MG5	MAP9_HUMAN	aster-associated protein	634					cell division|mitosis	cytoplasm|microtubule|spindle				ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.143)		AGGGCTCCACGGAGGAAGTGC	0.358													4	6					0	0	0.000602214	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156631897	156631897	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:156631897G>A	uc003iov.2	+	7	1116	c.580G>A	c.(580-582)GAT>AAT	p.D194N	GUCY1A3_uc003iou.2_Missense_Mutation_p.D194N|GUCY1A3_uc010iqc.2_Missense_Mutation_p.D194N|GUCY1A3_uc003iow.2_Missense_Mutation_p.D194N|GUCY1A3_uc010iqd.2_Missense_Mutation_p.D193N|GUCY1A3_uc003iox.2_Missense_Mutation_p.D194N|GUCY1A3_uc003ioz.2_5'UTR|GUCY1A3_uc003ioy.2_Missense_Mutation_p.D194N|GUCY1A3_uc010iqe.2_5'UTR|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Missense_Mutation_p.D194N	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	194					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity	p.D194fs*2(2)		central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		TCTATGCCTGGATAAGGAGGA	0.453													10	39					0	0	0.000442599	0	0
PDGFC	56034	broad.mit.edu	37	4	157688958	157688958	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:157688958A>C	uc003iph.1	-	5	1379	c.888T>G	c.(886-888)TGT>TGG	p.C296W	PDGFC_uc003ipi.1_Missense_Mutation_p.C133W|PDGFC_uc011cis.1_Missense_Mutation_p.C133W|PDGFC_uc011cir.1_Missense_Mutation_p.C140W	NM_016205	NP_057289	Q9NRA1	PDGFC_HUMAN	platelet-derived growth factor C precursor	296					central nervous system development|platelet-derived growth factor receptor signaling pathway|positive regulation of cell division|positive regulation of DNA replication|positive regulation of fibroblast proliferation|vascular endothelial growth factor receptor signaling pathway	endoplasmic reticulum lumen|extracellular space|Golgi membrane|nucleus	cell surface binding|growth factor activity|platelet-derived growth factor receptor binding|protein homodimerization activity			ovary(1)|lung(1)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.08)|Kidney(143;0.0977)|COAD - Colon adenocarcinoma(41;0.212)		TGCTTGGGACACATTGACATT	0.398													3	35					0	0	0.00024832	0	0
GLRB	2743	broad.mit.edu	37	4	158060009	158060009	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:158060009C>T	uc003ipj.2	+	7	861	c.659C>T	c.(658-660)CCT>CTT	p.P220L		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	220	Extracellular (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	TCAGGAGATCCTGTGCAATTA	0.279													35	21					0	0	0.00285205	0	0
RXFP1	59350	broad.mit.edu	37	4	159529150	159529150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:159529150C>T	uc003ipz.2	+	6	573	c.491C>T	c.(490-492)TCC>TTC	p.S164F	RXFP1_uc010iqj.1_5'UTR|RXFP1_uc011cja.1_Missense_Mutation_p.S83F|RXFP1_uc010iqo.2_Missense_Mutation_p.S164F|RXFP1_uc011cjb.1_Missense_Mutation_p.S110F|RXFP1_uc010iqk.2_Missense_Mutation_p.S32F|RXFP1_uc011cjc.1_Missense_Mutation_p.S83F|RXFP1_uc011cjd.1_Missense_Mutation_p.S83F|RXFP1_uc010iql.2_Missense_Mutation_p.S32F|RXFP1_uc011cje.1_Missense_Mutation_p.S191F|RXFP1_uc010iqm.2_Missense_Mutation_p.S131F|RXFP1_uc011cjf.1_Missense_Mutation_p.S34F|RXFP1_uc010iqn.2_Missense_Mutation_p.S110F	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	164	Extracellular (Potential).|LRR 1.					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		AAGATTACATCCATCTCCATC	0.289													34	26					0	0	0.00428921	0	0
NPY1R	4886	broad.mit.edu	37	4	164246629	164246629	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:164246629G>A	uc003iqm.1	-	3	1247	c.981C>T	c.(979-981)TTC>TTT	p.F327F	NPY1R_uc011cjj.1_Silent_p.F84F	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	327	Cytoplasmic (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				AGTCTCTCTGGAAGTTTTTGT	0.433													14	49					0	0	0.00400662	0	0
NPY1R	4886	broad.mit.edu	37	4	164246778	164246778	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:164246778G>A	uc003iqm.1	-	3	1098	c.832C>T	c.(832-834)CCT>TCT	p.P278S	NPY1R_uc011cjj.1_Missense_Mutation_p.P35S	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	278	Helical; Name=6; (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				ATGGTAAGAGGGAGCCAGCAG	0.433													34	15					0	0	0.0024448	0	0
TKTL2	84076	broad.mit.edu	37	4	164394221	164394221	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:164394221C>T	uc003iqp.3	-	1	827	c.666G>A	c.(664-666)GTG>GTA	p.V222V		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	222						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				ACAAGGCCTCCACATCATGGC	0.483													35	68					0	0	0.00111076	0	0
Unknown	0	broad.mit.edu	37	4	165981082	165981082	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:165981082G>A	uc011cjl.1	+	1	783	c.783G>A	c.(781-783)GAG>GAA	p.E261E		NM_001105575	NP_001099045			tripartite motif-containing 75																		CTGAAAATGAGAGTAGCCCAT	0.373													26	56					0	0	0.000878237	0	0
DDX60	55601	broad.mit.edu	37	4	169188838	169188838	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:169188838G>A	uc003irp.2	-	22	3226	c.2934C>T	c.(2932-2934)CTC>CTT	p.L978L		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	978							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		TCTCTCCATAGAGCACTAAAA	0.348													17	43					0	0	0.000958276	0	0
DDX60L	91351	broad.mit.edu	37	4	169351758	169351758	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:169351758G>A	uc003irq.3	-	13	1769	c.1548C>T	c.(1546-1548)TTC>TTT	p.F516F	DDX60L_uc003irr.1_Silent_p.F516F|DDX60L_uc003irs.1_Silent_p.F243F	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	516							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		TCTTTTTCAGGAAATCAAGAA	0.333													7	9					0	0	0.00198382	0	0
GALNTL6	442117	broad.mit.edu	37	4	173730571	173730571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:173730571C>T	uc003isv.2	+	6	1349	c.613C>T	c.(613-615)CGC>TGC	p.R205C		NM_001034845	NP_001030017	Q49A17	GLTL6_HUMAN	N-acetylgalactosaminyltransferase-like 6	205	Catalytic subdomain A.|Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(2)|ovary(1)|skin(1)	4						GAGGATTGTTCGCACCAAGAA	0.478													12	36					0	0	0.00400662	0	0
MORF4	10934	broad.mit.edu	37	4	174537654	174537654	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:174537654C>T	uc011cke.1	-	1	141	c.141G>A	c.(139-141)AAG>AAA	p.K47K		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		GGGCCCTTTTCTTTCGAGGAG	0.403													15	80					0	0	0.00400662	0	0
NEIL3	55247	broad.mit.edu	37	4	178256880	178256880	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:178256880C>T	uc003iut.2	+	3	434	c.317C>T	c.(316-318)CCA>CTA	p.P106L	NEIL3_uc010irs.2_Missense_Mutation_p.P9L	NM_018248	NP_060718	Q8TAT5	NEIL3_HUMAN	nei endonuclease VIII-like 3	106					base-excision repair|nucleotide-excision repair	nucleus	bubble DNA binding|damaged DNA binding|DNA N-glycosylase activity|DNA-(apurinic or apyrimidinic site) lyase activity|double-stranded DNA binding|single-stranded DNA binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4		Breast(14;6.27e-05)|Melanoma(52;0.00102)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.164)		all cancers(43;1.96e-23)|Epithelial(43;2.52e-20)|OV - Ovarian serous cystadenocarcinoma(60;1.89e-11)|GBM - Glioblastoma multiforme(59;9.49e-05)|Colorectal(24;0.00013)|COAD - Colon adenocarcinoma(29;0.000696)|STAD - Stomach adenocarcinoma(60;0.00308)|LUSC - Lung squamous cell carcinoma(193;0.0398)|READ - Rectum adenocarcinoma(43;0.191)		ATGATTAATCCACTTGAGTAT	0.338								BER_DNA_glycosylases					27	57					0	0	0.00106085	0	0
RWDD4A	201965	broad.mit.edu	37	4	184572254	184572254	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:184572254G>A	uc003ivt.1	-	4	472	c.246C>T	c.(244-246)GCC>GCT	p.A82A	RWDD4A_uc003ivu.1_RNA|RWDD4A_uc003ivv.1_Silent_p.A19A|RWDD4A_uc011ckl.1_RNA	NM_152682	NP_689895	Q6NW29	RWDD4_HUMAN	RWD domain containing 4A	82	RWD.										0		all_lung(41;4.4e-14)|Lung NSC(41;1.03e-13)|Colorectal(36;0.00139)|all_hematologic(60;0.00756)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.202)		all cancers(43;7.35e-27)|Epithelial(43;1.49e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.76e-10)|GBM - Glioblastoma multiforme(59;5.54e-06)|Colorectal(24;7.92e-06)|STAD - Stomach adenocarcinoma(60;2.35e-05)|COAD - Colon adenocarcinoma(29;6.26e-05)|LUSC - Lung squamous cell carcinoma(40;0.00935)|READ - Rectum adenocarcinoma(43;0.166)		CCTGTAGCTTGGCTAATATAC	0.368													16	38					0	0	0.00316338	0	0
IRF2	3660	broad.mit.edu	37	4	185311898	185311898	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:185311898C>T	uc003iwf.3	-	8	900	c.700G>A	c.(700-702)GAA>AAA	p.E234K		NM_002199	NP_002190	P14316	IRF2_HUMAN	interferon regulatory factor 2	234					blood coagulation|cell proliferation|interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	focal adhesion|nucleoplasm	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		all_lung(41;7.86e-14)|Lung NSC(41;1.87e-13)|Colorectal(36;0.00146)|Hepatocellular(41;0.00826)|Renal(120;0.00992)|Prostate(90;0.0115)|all_neural(102;0.0573)|all_hematologic(60;0.0592)		all cancers(43;3.94e-27)|Epithelial(43;5.3e-24)|OV - Ovarian serous cystadenocarcinoma(60;1.06e-10)|Colorectal(24;7.98e-07)|STAD - Stomach adenocarcinoma(60;3.95e-05)|GBM - Glioblastoma multiforme(59;8.3e-05)|COAD - Colon adenocarcinoma(29;0.000106)|BRCA - Breast invasive adenocarcinoma(30;0.000311)|LUSC - Lung squamous cell carcinoma(40;0.0128)|READ - Rectum adenocarcinoma(43;0.0419)		TCAGTCGTTTCGCTTTCTGTT	0.537													14	45					0	0	0.00244969	0	0
SORBS2	8470	broad.mit.edu	37	4	186545032	186545032	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:186545032G>A	uc003iyl.2	-	13	2397	c.1539C>T	c.(1537-1539)TTC>TTT	p.F513F	SORBS2_uc003iyh.2_Intron|SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Silent_p.F613F|SORBS2_uc003iyn.1_Intron|SORBS2_uc011cku.1_Intron|SORBS2_uc011ckv.1_Silent_p.F417F|SORBS2_uc003iyd.2_Intron|SORBS2_uc003iye.2_Intron|SORBS2_uc003iya.2_Intron|SORBS2_uc003iyb.2_Intron|SORBS2_uc003iyc.2_Intron|SORBS2_uc003iyg.2_Silent_p.F627F|SORBS2_uc003iyf.2_Intron|SORBS2_uc003iyo.1_Intron	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	513						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		TCAGCTTTTCGAATTCGGAGA	0.572													26	59					0	0	0.00106085	0	0
TRIML1	339976	broad.mit.edu	37	4	189060977	189060977	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:189060977G>A	uc003izm.1	+	1	380	c.265G>A	c.(265-267)GAG>AAG	p.E89K		NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	89					multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		GCTGCAGAGCGAGGATGAGCA	0.662													23	13					0	0	0.00229938	0	0
SLC9A3	6550	broad.mit.edu	37	5	484715	484715	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:484715G>A	uc003jbe.2	-	5	964	c.852C>T	c.(850-852)ATC>ATT	p.I284I	SLC9A3_uc011clx.1_Silent_p.I284I	NM_004174	NP_004165	P48764	SL9A3_HUMAN	solute carrier family 9 (sodium/hydrogen	284	Cytoplasmic (Potential).					cell surface|integral to membrane	sodium:hydrogen antiporter activity				0			Epithelial(17;0.000529)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|all cancers(22;0.00186)|Lung(60;0.0863)			CGGGCTCGATGATACGCACAT	0.622													7	28					0	0	0.00307968	0	0
TRIP13	9319	broad.mit.edu	37	5	900650	900650	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:900650G>A	uc003jbr.2	+	4	540	c.430G>A	c.(430-432)GAA>AAA	p.E144K	TRIP13_uc010ite.1_Missense_Mutation_p.E144K	NM_004237	NP_004228	Q15645	PCH2_HUMAN	thyroid hormone receptor interactor 13	144					double-strand break repair|reciprocal meiotic recombination|synaptonemal complex assembly|transcription from RNA polymerase II promoter		ATP binding|identical protein binding|nucleoside-triphosphatase activity|transcription cofactor activity				0			Epithelial(17;0.00147)|OV - Ovarian serous cystadenocarcinoma(19;0.00271)|all cancers(22;0.00622)|Lung(60;0.165)			ATACGATGTGGAAGTCAAATC	0.458													35	22					0	0	0.00111076	0	0
NKD2	85409	broad.mit.edu	37	5	1038363	1038363	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:1038363G>A	uc003jbt.1	+	10	1236	c.1231G>A	c.(1231-1233)GTG>ATG	p.V411M	NKD2_uc010itf.1_3'UTR	NM_033120	NP_149111	Q969F2	NKD2_HUMAN	naked cuticle homolog 2	411					exocytosis|Wnt receptor signaling pathway	cytoplasmic membrane-bounded vesicle|plasma membrane	calcium ion binding|ubiquitin protein ligase binding				0	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;3.28e-09)		Epithelial(17;0.00093)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00417)|Lung(60;0.165)			GCACGAGGTGGTGCGGGACCT	0.577													5	4					0	0	0.00116845	0	0
SLC6A19	340024	broad.mit.edu	37	5	1216766	1216766	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:1216766C>T	uc003jbw.3	+	7	1037	c.981C>T	c.(979-981)TTC>TTT	p.F327F		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	327	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TCATTGGGTTCCGCGCCACAC	0.597													16	29					0	0	0.00316338	0	0
NSUN2	54888	broad.mit.edu	37	5	6625745	6625745	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:6625745G>C	uc003jdu.2	-	4	462	c.397C>G	c.(397-399)CGA>GGA	p.R133G	NSUN2_uc011cmk.1_Missense_Mutation_p.R98G|NSUN2_uc003jdv.2_5'UTR	NM_017755	NP_060225	Q08J23	NSUN2_HUMAN	NOL1/NOP2/Sun domain family, member 2	133						cytoplasm|nucleolus	tRNA (cytosine-5-)-methyltransferase activity|tRNA binding			ovary(1)	1						AAGATTTTTCGACTTAAATTT	0.343													21	16					0	0	0.00332997	0	0
SRD5A1	6715	broad.mit.edu	37	5	6633926	6633927	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:6633926_6633927CC>TT	uc003jdw.2	+	1	427_428	c.237_238CC>TT	c.(235-240)CTCCGC>CTTTGC	p.R80C	NSUN2_uc003jdu.2_5'Flank|NSUN2_uc011cmk.1_5'Flank|NSUN2_uc003jdv.2_5'Flank|SRD5A1_uc011cml.1_RNA|SRD5A1_uc011cmm.1_Missense_Mutation_p.S88F	NM_001047	NP_001038	P18405	S5A1_HUMAN	steroid-5-alpha-reductase 1	80					androgen biosynthetic process|cell differentiation|sex determination|sex differentiation	endoplasmic reticulum membrane|integral to membrane|microsome	3-oxo-5-alpha-steroid 4-dehydrogenase activity|electron carrier activity				0					Dutasteride(DB01126)|Finasteride(DB01216)	CCCCGCGTCTCCGCAGCGCGCC	0.738													7	37					0	0	6.4e-05	0	0
MTRR	4552	broad.mit.edu	37	5	7897231	7897231	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:7897231C>T	uc003jed.2	+	14	1934	c.1904C>T	c.(1903-1905)TCC>TTC	p.S635F	MTRR_uc003jee.3_Missense_Mutation_p.S608F|MTRR_uc003jef.3_RNA|MTRR_uc003jeg.3_RNA|MTRR_uc010ito.2_RNA	NM_024010	NP_076915	Q9UBK8	MTRR_HUMAN	methionine synthase reductase isoform 2	635					methionine biosynthetic process	cytosol	[methionine synthase] reductase activity|flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding			ovary(1)	1					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)|L-Methionine(DB00134)	CTAAAGGTTTCCTTCTCAAGA	0.438													28	18					0	0	0.00106085	0	0
TAS2R1	50834	broad.mit.edu	37	5	9629808	9629808	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:9629808G>A	uc003jem.1	-	1	656	c.337C>T	c.(337-339)CCA>TCA	p.P113S		NM_019599	NP_062545	Q9NYW7	TA2R1_HUMAN	taste receptor T2R1	113	Cytoplasmic (Potential).				chemosensory behavior|sensory perception of taste	integral to membrane	taste receptor activity			ovary(3)	3						ATGAAGAGTGGGTGACGGACG	0.443													22	6					0	0	0.00152264	0	0
CTNND2	1501	broad.mit.edu	37	5	10981885	10981885	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:10981885C>T	uc003jfa.1	-	21	3562	c.3417G>A	c.(3415-3417)CAG>CAA	p.Q1139Q	CTNND2_uc010itt.2_Silent_p.Q1048Q|CTNND2_uc011cmy.1_Silent_p.Q802Q|CTNND2_uc011cmz.1_Silent_p.Q706Q|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.Q731Q	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	1139					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						TTTACTTTACCTGGTTGTGTT	0.338													35	81					0	0	0.00111076	0	0
CTNND2	1501	broad.mit.edu	37	5	11159724	11159724	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:11159724G>A	uc003jfa.1	-	12	2268	c.2123C>T	c.(2122-2124)TCA>TTA	p.S708L	CTNND2_uc010itt.2_Missense_Mutation_p.S617L|CTNND2_uc011cmy.1_Missense_Mutation_p.S371L|CTNND2_uc011cmz.1_Missense_Mutation_p.S275L|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.S275L	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	708	ARM 5.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						CACCTGTGATGAATGCAGCTG	0.557													48	33					0	0	0.00361006	0	0
DNAH5	1767	broad.mit.edu	37	5	13718991	13718991	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:13718991C>T	uc003jfd.2	-	72	12541	c.12499G>A	c.(12499-12501)GGT>AGT	p.G4167S	DNAH5_uc003jfc.2_Missense_Mutation_p.G335S	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4167	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTGGACTCACCACTATATGTT	0.388									Kartagener_syndrome				11	44					0	0	0.000978159	0	0
DNAH5	1767	broad.mit.edu	37	5	13719030	13719030	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:13719030G>A	uc003jfd.2	-	72	12502	c.12460C>T	c.(12460-12462)CCA>TCA	p.P4154S	DNAH5_uc003jfc.2_Missense_Mutation_p.P322S	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4154	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGTCCTTGTGGAGGATCGTTG	0.448									Kartagener_syndrome				11	62					0	0	0.00185496	0	0
DNAH5	1767	broad.mit.edu	37	5	13727616	13727616	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:13727616C>T	uc003jfd.2	-	70	12075	c.12033G>A	c.(12031-12033)CAG>CAA	p.Q4011Q	DNAH5_uc003jfc.2_Silent_p.Q179Q	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4011					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GACTTTTTACCTGGGCGATGG	0.323									Kartagener_syndrome				8	24					0	0	0.000274275	0	0
DNAH5	1767	broad.mit.edu	37	5	13727654	13727654	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:13727654G>A	uc003jfd.2	-	70	12037	c.11995C>T	c.(11995-11997)CTT>TTT	p.L3999F	DNAH5_uc003jfc.2_Missense_Mutation_p.L167F	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3999					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GATCTAATAAGGAGAAGACGT	0.348									Kartagener_syndrome				23	19					0	0	0.00127121	0	0
DNAH5	1767	broad.mit.edu	37	5	13759068	13759068	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:13759068G>A	uc003jfd.2	-	61	10348	c.10306C>T	c.(10306-10308)CGC>TGC	p.R3436C	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3436	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGGAGATGGCGATTCTCTTGC	0.547									Kartagener_syndrome				36	92					0	0	0.00170553	0	0
DNAH5	1767	broad.mit.edu	37	5	13769624	13769624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:13769624C>T	uc003jfd.2	-	57	9748	c.9706G>A	c.(9706-9708)GAT>AAT	p.D3236N	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3236	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCGGCTTTATCGTTGGCCACT	0.418									Kartagener_syndrome				20	48					0	0	0.00278032	0	0
DNAH5	1767	broad.mit.edu	37	5	13776775	13776775	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:13776775T>A	uc003jfd.2	-	55	9188	c.9146A>T	c.(9145-9147)AAT>ATT	p.N3049I		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3049	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CAGGTCGCTATTAATTTCATC	0.408									Kartagener_syndrome				22	34					0	0	0.00188189	0	0
DNAH5	1767	broad.mit.edu	37	5	13811764	13811764	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:13811764G>A	uc003jfd.2	-	44	7441	c.7399C>T	c.(7399-7401)CCT>TCT	p.P2467S		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2467					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ACCTTCAGAGGAATCAGGCCT	0.403									Kartagener_syndrome				42	20					0	0	0.00361006	0	0
DNAH5	1767	broad.mit.edu	37	5	13845071	13845071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:13845071G>A	uc003jfd.2	-	32	5188	c.5146C>T	c.(5146-5148)CGG>TGG	p.R1716W		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1716	Stem (By similarity).		R -> L (in CILD3).		microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AAGAAAAACCGAGGAAAGCAC	0.443									Kartagener_syndrome				17	25					0	0	0.000566183	0	0
DNAH5	1767	broad.mit.edu	37	5	13920608	13920608	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:13920608C>A	uc003jfd.2	-	6	821	c.779G>T	c.(778-780)TGG>TTG	p.W260L	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	260	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTGTTTGATCCATACTTTCAT	0.398									Kartagener_syndrome				27	94					7.07758e-08	1.93495e-07	0.000720815	1	0
DNAH5	1767	broad.mit.edu	37	5	13928280	13928280	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:13928280C>T	uc003jfd.2	-	3	242	c.200G>A	c.(199-201)AGA>AAA	p.R67K	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	67	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTGATCAATTCTTTCAATCTG	0.318									Kartagener_syndrome				12	42					0	0	0.00185496	0	0
TRIO	7204	broad.mit.edu	37	5	14387901	14387901	+	Silent	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:14387901C>A	uc003jff.2	+	23	3832	c.3826C>A	c.(3826-3828)CGA>AGA	p.R1276R	TRIO_uc003jfg.2_RNA|TRIO_uc011cna.1_Silent_p.R1227R|TRIO_uc003jfh.1_Silent_p.R925R	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	1276					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					GGTGAAACTTCGAGATGCTGC	0.433													28	31					5.91797e-21	1.62438e-20	0.0024448	1	0
PRDM9	56979	broad.mit.edu	37	5	23524458	23524459	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:23524458_23524459CC>TT	uc003jgo.2	+	10	1148_1149	c.966_967CC>TT	c.(964-969)GCCCGG>GCTTGG	p.R323W		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	323	SET.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						TGAACTGTGCCCGGGATGATGA	0.54										HNSCC(3;0.000094)			12	36					0	0	6.4e-05	0	0
PRDM9	56979	broad.mit.edu	37	5	23527808	23527808	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:23527808G>A	uc003jgo.2	+	11	2793	c.2611G>A	c.(2611-2613)GAT>AAT	p.D871N		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	871	C2H2-type 14.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						GGGCTTTAGCGATAGGTCAAG	0.547										HNSCC(3;0.000094)			19	46					0	0	0.000958276	0	0
CDH9	1007	broad.mit.edu	37	5	26915833	26915833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:26915833G>A	uc003jgs.1	-	3	597	c.428C>T	c.(427-429)TCG>TTG	p.S143L	CDH9_uc010iug.2_Missense_Mutation_p.S143L	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	143	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						GATAAATTCCGATTCCGGTTC	0.398													67	32					0	0	0.00361006	0	0
CDH6	1004	broad.mit.edu	37	5	31322980	31322980	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:31322980C>T	uc003jhe.1	+	12	2264	c.1938C>T	c.(1936-1938)ATC>ATT	p.I646I		NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	646	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						AGCCTTTGATCATTTCCAAAG	0.463													22	47					0	0	0.00332997	0	0
SPEF2	79925	broad.mit.edu	37	5	35641617	35641617	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:35641617C>T	uc003jjo.2	+	3	357	c.246C>T	c.(244-246)GCC>GCT	p.A82A	SPEF2_uc003jjn.1_Silent_p.A82A|SPEF2_uc003jjq.3_Silent_p.A82A	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	82	CH.				nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGAATGTGGCCCATGGCATCA	0.423													8	24					0	0	0.000274275	0	0
SPEF2	79925	broad.mit.edu	37	5	35740050	35740050	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:35740050G>A	uc003jjo.2	+	22	3204	c.3093G>A	c.(3091-3093)TGG>TGA	p.W1031*	SPEF2_uc003jjp.1_Nonsense_Mutation_p.W517*	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1031					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TACCTTACTGGGAACTAATAG	0.338													16	31					0	0	0.00400662	0	0
SPEF2	79925	broad.mit.edu	37	5	35779244	35779244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:35779244C>T	uc003jjo.2	+	30	4354	c.4243C>T	c.(4243-4245)CGC>TGC	p.R1415C	SPEF2_uc003jjp.1_Missense_Mutation_p.R901C|SPEF2_uc003jjr.2_5'UTR	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1415					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TGACGTAGCTCGCTATCACAT	0.323													9	22					0	0	0.000673444	0	0
UGT3A1	133688	broad.mit.edu	37	5	35957327	35957327	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:35957327C>T	uc003jjv.1	-	5	1195	c.1038G>A	c.(1036-1038)GTG>GTA	p.V346V	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Silent_p.V346V|UGT3A1_uc011cor.1_Silent_p.V312V	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	346	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CCACAATTTTCACATTTGTGG	0.488													12	28					0	0	0.00244969	0	0
UGT3A2	167127	broad.mit.edu	37	5	36039597	36039597	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:36039597G>A	uc003jjz.1	-	5	1150	c.1057C>T	c.(1057-1059)CCT>TCT	p.P353S	UGT3A2_uc011cos.1_Missense_Mutation_p.P319S|UGT3A2_uc011cot.1_Missense_Mutation_p.P51S	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	353	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TCACTCTGAGGAAGCCAGTCC	0.537													18	56					0	0	0.00152264	0	0
UGT3A2	167127	broad.mit.edu	37	5	36039788	36039788	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:36039788T>C	uc003jjz.1	-	5	959	c.866A>G	c.(865-867)AAG>AGG	p.K289R	UGT3A2_uc011cos.1_Missense_Mutation_p.K255R|UGT3A2_uc011cot.1_5'UTR	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	289	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GTCCCCAAACTTGGCAATGAA	0.448													11	37					0	0	0.00136819	0	0
OSMR	9180	broad.mit.edu	37	5	38886271	38886271	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:38886271C>T	uc003jln.1	+	7	1337	c.970C>T	c.(970-972)CTT>TTT	p.L324F	OSMR_uc003jlm.1_Missense_Mutation_p.L324F	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	324	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					TGTCAATATCCTTTTTAACCT	0.403													15	40					0	0	0.000566183	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41004490	41004490	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:41004490G>A	uc003jmj.3	-	37	4642	c.4152C>T	c.(4150-4152)TAC>TAT	p.Y1384Y	HEATR7B2_uc003jmi.3_Silent_p.Y939Y	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1384	HEAT 15.						binding			ovary(6)|central_nervous_system(2)	8						TTTCCTTGAAGTAGAAGCTCA	0.468													74	54					0	0	0.00361006	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41018473	41018473	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:41018473G>A	uc003jmj.3	-	27	3223	c.2733C>T	c.(2731-2733)ATC>ATT	p.I911I	HEATR7B2_uc003jmi.3_Silent_p.I466I	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	911							binding			ovary(6)|central_nervous_system(2)	8						CTTTCGCAGTGATCTGGAAGG	0.393													5	27					0	0	0.000602214	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41033178	41033178	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:41033178A>T	uc003jmj.3	-	23	2816	c.2326T>A	c.(2326-2328)TTT>ATT	p.F776I	HEATR7B2_uc003jmi.3_Missense_Mutation_p.F331I	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	776							binding			ovary(6)|central_nervous_system(2)	8						TTGTAGGAAAACTGGAACCCC	0.453													15	8					0	0	0.00121646	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41055862	41055862	+	Silent	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:41055862A>G	uc003jmj.3	-	10	1505	c.1015T>C	c.(1015-1017)TTG>CTG	p.L339L	HEATR7B2_uc003jmi.3_Intron	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	339	HEAT 4.						binding			ovary(6)|central_nervous_system(2)	8						TTGACAGCCAATCTTAACAAA	0.418													20	58					0	0	0.00278032	0	0
C6	729	broad.mit.edu	37	5	41153961	41153961	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:41153961C>T	uc003jmk.2	-	15	2451	c.2241G>A	c.(2239-2241)CAG>CAA	p.Q747Q	C6_uc003jml.1_Silent_p.Q747Q	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	747	C5b-binding domain.|Sushi 2.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				AGGAATTCCCCTGGCATGTGT	0.473													4	14					0	0	0.00116845	0	0
C6	729	broad.mit.edu	37	5	41201788	41201788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:41201788C>T	uc003jmk.2	-	3	382	c.172G>A	c.(172-174)GAA>AAA	p.E58K	C6_uc003jml.1_Missense_Mutation_p.E58K	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	58	TSP type-1 1.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				CAAAAGTTTTCCTGGTAGTAC	0.408													8	39					0	0	0.000274275	0	0
C5orf51	285636	broad.mit.edu	37	5	41909989	41909989	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:41909989C>T	uc003jmo.2	+	3	349	c.349C>T	c.(349-351)CCA>TCA	p.P117S		NM_175921	NP_787117	A6NDU8	CE051_HUMAN	hypothetical protein LOC285636	117											0						TAATATGCATCCAAAAGTAAG	0.308													5	24					0	0	0.000602214	0	0
NNT	23530	broad.mit.edu	37	5	43651924	43651924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:43651924C>T	uc003joe.2	+	13	2056	c.1801C>T	c.(1801-1803)CCT>TCT	p.P601S	NNT_uc003jof.2_Missense_Mutation_p.P601S	NM_012343	NP_036475	Q13423	NNTM_HUMAN	nicotinamide nucleotide transhydrogenase	601	Helical; (Potential).				tricarboxylic acid cycle	integral to membrane|mitochondrial respiratory chain	NAD binding|NAD(P)+ transhydrogenase (AB-specific) activity|NAD(P)+ transhydrogenase (B-specific) activity|NADP binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(6;2.58e-06)				NADH(DB00157)	GTACCTGCTCCCTGCCGGCAC	0.453													36	82					0	0	0.00111076	0	0
HCN1	348980	broad.mit.edu	37	5	45303919	45303919	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:45303919C>T	uc003jok.2	-	6	1425	c.1400G>A	c.(1399-1401)CGG>CAG	p.R467Q		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	467	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						CACCAGTTTCCGACAGTTGAA	0.358													13	45					0	0	0.00316338	0	0
PARP8	79668	broad.mit.edu	37	5	50056193	50056193	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:50056193G>A	uc003jon.3	+	6	524	c.342G>A	c.(340-342)GGG>GGA	p.G114G	PARP8_uc011cpz.1_Intron|PARP8_uc003joo.2_Silent_p.G114G|PARP8_uc003jop.2_Silent_p.G114G	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	114						intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				AGGAAAATGGGGAGGTATGTA	0.229													7	12					0	0	0.00307968	0	0
PARP8	79668	broad.mit.edu	37	5	50091143	50091143	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:50091143C>T	uc003jon.3	+	13	1502	c.1320C>T	c.(1318-1320)TCC>TCT	p.S440S	PARP8_uc011cpz.1_Silent_p.S332S|PARP8_uc003joo.2_Silent_p.S440S|PARP8_uc003jop.2_Silent_p.S440S	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	440						intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				CCAAGTCATCCAAAACTGAGC	0.438													27	19					0	0	0.00127121	0	0
ITGA1	3672	broad.mit.edu	37	5	52161619	52161619	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:52161619G>A	uc003jou.2	+	6	644	c.592G>A	c.(592-594)GAA>AAA	p.E198K	ITGA1_uc003jov.2_RNA	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	198	Extracellular (Potential).|VWFA.			E -> K (in Ref. 3).	axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity			ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				TGACCTTCTTGAAAGAATGGA	0.358													36	21					0	0	0.00327116	0	0
ITGA1	3672	broad.mit.edu	37	5	52189578	52189578	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:52189578G>A	uc003jou.2	+	9	1049	c.997G>A	c.(997-999)GAA>AAA	p.E333K	ITGA1_uc003jov.2_RNA	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	333	Extracellular (Potential).|VWFA.				axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity			ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				AATTGCAAGTGAACCCACTGA	0.373													14	55					0	0	0.00244969	0	0
ITGA1	3672	broad.mit.edu	37	5	52240865	52240865	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:52240865G>A	uc003jou.2	+	27	3430	c.3378G>A	c.(3376-3378)GAG>GAA	p.E1126E	ITGA1_uc003jov.2_RNA|ITGA1_uc003jow.2_Silent_p.E657E	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	1126	Extracellular (Potential).				axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity			ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				AAAAAAGAGAGGTAAGTGCAA	0.338													47	118					0	0	0.00361006	0	0
IL31RA	133396	broad.mit.edu	37	5	55195914	55195914	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:55195914G>A	uc003jql.2	+	8	1088	c.1023G>A	c.(1021-1023)GGG>GGA	p.G341G	IL31RA_uc003jqk.2_Silent_p.G341G|IL31RA_uc011cqj.1_Silent_p.G199G|IL31RA_uc003jqm.2_Silent_p.G309G|IL31RA_uc003jqn.2_Silent_p.G341G|IL31RA_uc010iwa.1_Silent_p.G309G|IL31RA_uc003jqo.2_Silent_p.G199G	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	309	Extracellular (Potential).|Fibronectin type-III 3.				anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				ATTCTCTTGGGAAGTCTCCAG	0.453													50	118					0	0	0.00361006	0	0
RGS7BP	401190	broad.mit.edu	37	5	63890555	63890555	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:63890555G>A	uc003jtj.2	+	4	482	c.482G>A	c.(481-483)GGA>GAA	p.G161E	RGS7BP_uc011cqu.1_Missense_Mutation_p.G28E	NM_001029875	NP_001025046	Q6MZT1	R7BP_HUMAN	regulator of G-protein signaling 7 binding	161					negative regulation of signal transduction	cytoplasm|nucleus|plasma membrane					0		Lung NSC(810;0.000518)|Prostate(74;0.0435)|Ovarian(174;0.186)		Lung(70;0.147)		CCTGGCGGGGGAACCAAGAGT	0.478													12	34					0	0	0.00400662	0	0
MAST4	375449	broad.mit.edu	37	5	66124697	66124697	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:66124697G>A	uc003jut.1	+	1	94	c.26G>A	c.(25-27)CGA>CAA	p.R9Q	MAST4_uc003jur.3_Intron|MAST4_uc010iwz.2_Intron|MAST4_uc003jus.2_Missense_Mutation_p.R9Q	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	1266						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		ATTCTAAGACGAAGAGGGCTC	0.483													6	4					0	0	0.000274275	0	0
PTCD2	79810	broad.mit.edu	37	5	71627109	71627109	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:71627109C>T	uc003kcb.2	+	4	385	c.375C>T	c.(373-375)TTC>TTT	p.F125F	PTCD2_uc011csf.1_5'UTR|PTCD2_uc003kcc.2_5'UTR|PTCD2_uc011csg.1_Intron|PTCD2_uc011csh.1_Intron|PTCD2_uc003kcd.2_RNA	NM_024754	NP_079030	Q8WV60	PTCD2_HUMAN	pentatricopeptide repeat domain 2	125											0		Lung NSC(167;0.00237)|Ovarian(174;0.0175)|Prostate(461;0.141)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.73e-53)		ACAAAAATTTCACTTTGGGGG	0.398													46	97					0	0	0.00361006	0	0
F2RL2	2151	broad.mit.edu	37	5	75914462	75914462	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:75914462C>T	uc003kem.2	-	2	255	c.70G>A	c.(70-72)GAA>AAA	p.E24K	IQGAP2_uc003kek.2_Intron|IQGAP2_uc010izv.2_Intron|IQGAP2_uc011csv.1_Intron|IQGAP2_uc003kel.2_Intron|F2RL2_uc011csw.1_Missense_Mutation_p.E2K	NM_004101	NP_004092	O00254	PAR3_HUMAN	coagulation factor II (thrombin) receptor-like 2	24					platelet activation	extracellular region|integral to plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|thrombin receptor activity			skin(2)|ovary(1)	3		all_lung(232;0.000462)|Lung NSC(167;0.00124)|Prostate(461;0.00955)|Ovarian(174;0.0129)		all cancers(79;4.43e-43)		GTATCATTTTCCATGCCTGTA	0.338													80	55					0	0	0.00361006	0	0
WDR41	55255	broad.mit.edu	37	5	76736641	76736641	+	Silent	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:76736641T>C	uc003kff.1	-	9	1166	c.879A>G	c.(877-879)GAA>GAG	p.E293E	WDR41_uc011csy.1_Silent_p.E235E|WDR41_uc011csz.1_Silent_p.E238E|WDR41_uc011cta.1_RNA|WDR41_uc011ctb.1_RNA	NM_018268	NP_060738	Q9HAD4	WDR41_HUMAN	WD repeat domain 41	293											0		all_lung(232;0.000961)|Lung NSC(167;0.0011)|Ovarian(174;0.0105)|Prostate(461;0.059)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-50)|Epithelial(54;2.04e-44)|all cancers(79;6.84e-40)		TTTTTACCTCTTCATCACATG	0.323													27	17					0	0	0.00106085	0	0
OTP	23440	broad.mit.edu	37	5	76932724	76932724	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:76932724G>A	uc003kfg.2	-	2	517	c.369C>T	c.(367-369)TTC>TTT	p.F123F		NM_032109	NP_115485	Q5XKR4	OTP_HUMAN	orthopedia homeobox	123	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(1)	1		all_lung(232;0.00051)|Lung NSC(167;0.000601)|Ovarian(174;0.0105)|Prostate(461;0.214)		OV - Ovarian serous cystadenocarcinoma(54;9.04e-51)|Epithelial(54;1.62e-45)|all cancers(79;4.4e-41)		GAGTCTTGGCGAAGCTCCTCT	0.637													39	90					0	0	0.00195071	0	0
VCAN	1462	broad.mit.edu	37	5	82834193	82834193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:82834193C>T	uc003kii.3	+	8	5727	c.5371C>T	c.(5371-5373)CCT>TCT	p.P1791S	VCAN_uc003kij.3_Missense_Mutation_p.P804S|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.P455S	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	1791	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		AGATTCTACTCCTGTCTTTAC	0.433													9	21					0	0	0.000673444	0	0
RHOBTB3	22836	broad.mit.edu	37	5	95119555	95119555	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:95119555C>T	uc003klm.2	+	10	2048	c.1511C>T	c.(1510-1512)TCC>TTC	p.S504F		NM_014899	NP_055714	O94955	RHBT3_HUMAN	rho-related BTB domain containing 3	504	Interaction with Rab9.				retrograde transport, endosome to Golgi	Golgi apparatus	ATP binding|ATPase activity|Rab GTPase binding			lung(1)|skin(1)	2		all_cancers(142;2.58e-06)|all_epithelial(76;4.19e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0164)|Colorectal(57;0.0846)|Breast(839;0.198)		all cancers(79;8.79e-16)		TACCAAGTGTCCAGACTGCAG	0.483													52	111					0	0	0.00361006	0	0
PCSK1	5122	broad.mit.edu	37	5	95728839	95728839	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:95728839G>A	uc003kls.1	-	14	2334	c.2128C>T	c.(2128-2130)CCT>TCT	p.P710S	PCSK1_uc010jbi.1_Missense_Mutation_p.P400S	NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	710					cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	AGCTGGGAAGGTTTGTTCAGC	0.418													42	93					0	0	0.00361006	0	0
ST8SIA4	7903	broad.mit.edu	37	5	100147679	100147679	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:100147679C>T	uc003knk.2	-	5	1280	c.952G>A	c.(952-954)GAT>AAT	p.D318N		NM_005668	NP_005659	Q92187	SIA8D_HUMAN	ST8 alpha-N-acetyl-neuraminide	318	Lumenal (Potential).				axon guidance|N-glycan processing	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			large_intestine(1)|central_nervous_system(1)	2		all_cancers(142;1.5e-07)|all_epithelial(76;1.43e-10)|Prostate(80;0.000644)|Lung NSC(167;0.0059)|all_lung(232;0.00914)|Ovarian(225;0.024)|Colorectal(57;0.09)|Breast(839;0.203)		COAD - Colon adenocarcinoma(37;0.00402)		TTTAAGTCATCATAATAATGA	0.353													22	11					0	0	0.00152264	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101834414	101834414	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:101834414C>T	uc003knn.2	-	1	307	c.135G>A	c.(133-135)GGG>GGA	p.G45G	SLCO6A1_uc003kno.2_Silent_p.G45G|SLCO6A1_uc003knp.2_Silent_p.G45G|SLCO6A1_uc003knq.2_Silent_p.G45G	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	45	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		GGTGTTTTTTCCCGGGCTTCG	0.572													72	137					0	0	0.00361006	0	0
RAB9BP1	9366	broad.mit.edu	37	5	104435377	104435377	+	RNA	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:104435377G>A	uc003kok.2	+	1		c.203G>A				NR_000039				Homo sapiens RAB9, member RAS oncogene family, pseudogene 1 (RAB9P1), non-coding RNA.												0						GGTCAGGAGTGATTCTGAAGC	0.413													15	29					0	0	0.00400662	0	0
PJA2	9867	broad.mit.edu	37	5	108673046	108673046	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:108673046G>A	uc003kos.3	-	10	2233	c.2013C>T	c.(2011-2013)TGC>TGT	p.C671C		NM_014819	NP_055634	O43164	PJA2_HUMAN	praja 2, RING-H2 motif containing	671	RING-type; atypical.|Interaction with PRKAR1A, PRKAR2A and PRKAR2B.				long-term memory|regulation of protein kinase A signaling cascade	cell junction|endoplasmic reticulum membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	ligase activity|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(142;4.4e-06)|all_epithelial(76;8.17e-08)|Prostate(80;0.00676)|Lung NSC(167;0.0436)|Ovarian(225;0.0443)|all_lung(232;0.053)|Colorectal(57;0.0946)|Breast(839;0.151)		OV - Ovarian serous cystadenocarcinoma(64;3.46e-10)|Epithelial(69;6.02e-09)|COAD - Colon adenocarcinoma(37;0.224)		GGCACACAGGGCATGTTCCCG	0.448													9	36					0	0	0.000274275	0	0
TRIM36	55521	broad.mit.edu	37	5	114466515	114466515	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:114466515G>A	uc003kqs.2	-	9	2115	c.1606C>T	c.(1606-1608)CGT>TGT	p.R536C	TRIM36_uc011cwc.1_Missense_Mutation_p.R524C|TRIM36_uc003kqt.2_Missense_Mutation_p.R381C	NM_018700	NP_061170	Q9NQ86	TRI36_HUMAN	tripartite motif-containing 36 isoform 1	536	B30.2/SPRY.					acrosomal vesicle|cytoskeleton	ligase activity|zinc ion binding			ovary(4)|lung(2)|breast(2)	8		all_cancers(142;0.00133)|all_epithelial(76;2.41e-05)|Prostate(80;0.00955)|Ovarian(225;0.0443)|Breast(839;0.195)		OV - Ovarian serous cystadenocarcinoma(64;3.62e-08)|Epithelial(69;7.69e-08)|all cancers(49;9.33e-06)		CTCTCTACACGGTCTCTCTTC	0.398													41	31					0	0	0.00222228	0	0
AQPEP	206338	broad.mit.edu	37	5	115327846	115327846	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:115327846A>C	uc003kro.2	+	5	1296	c.1132A>C	c.(1132-1134)AAC>CAC	p.N378H	AQPEP_uc003krp.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	378	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						TAGTTTTGACAACCATGCAAT	0.313													24	51					0	0	0.00106085	0	0
SEMA6A	57556	broad.mit.edu	37	5	115783050	115783050	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:115783050G>A	uc010jck.2	-	19	3061	c.2352C>T	c.(2350-2352)ATC>ATT	p.I784I	SEMA6A_uc003krx.3_Silent_p.I801I|SEMA6A_uc011cwe.1_Silent_p.I163I|SEMA6A_uc003krv.3_Silent_p.I211I|SEMA6A_uc003krw.3_Silent_p.I261I|SEMA6A_uc010jcj.2_Silent_p.I328I	NM_020796	NP_065847	Q9H2E6	SEM6A_HUMAN	sema domain, transmembrane domain (TM), and	784	Cytoplasmic (Potential).				apoptosis|axon guidance|cell surface receptor linked signaling pathway|cytoskeleton organization|organ morphogenesis	axon|integral to membrane|plasma membrane	receptor activity			ovary(2)	2		all_cancers(142;0.00316)|all_epithelial(76;5.71e-05)|Prostate(80;0.00845)|Ovarian(225;0.0796)|Lung NSC(810;0.171)|all_lung(232;0.203)		OV - Ovarian serous cystadenocarcinoma(64;1.59e-08)|Epithelial(69;2e-08)|all cancers(49;5.7e-08)|COAD - Colon adenocarcinoma(49;0.151)		TGCAGGCATTGATGAGGTTCT	0.677													17	35					0	0	0.000566183	0	0
PRR16	51334	broad.mit.edu	37	5	120021865	120021865	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:120021865C>T	uc003ksq.2	+	2	539	c.376C>T	c.(376-378)CCT>TCT	p.P126S	PRR16_uc003ksp.2_Missense_Mutation_p.P103S|PRR16_uc003ksr.2_Missense_Mutation_p.P56S	NM_016644	NP_057728	Q569H4	PRR16_HUMAN	proline rich 16	126	Pro-rich.									pancreas(2)|ovary(1)	3		all_cancers(142;0.0464)|Prostate(80;0.00446)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.000126)|Epithelial(69;0.000331)|all cancers(49;0.00169)		TCCACCACCTCCTCCAAGGTT	0.512													26	16					0	0	0.00127121	0	0
PRR16	51334	broad.mit.edu	37	5	120022262	120022262	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:120022262C>T	uc003ksq.2	+	2	936	c.773C>T	c.(772-774)CCT>CTT	p.P258L	PRR16_uc003ksp.2_Missense_Mutation_p.P235L|PRR16_uc003ksr.2_Missense_Mutation_p.P188L	NM_016644	NP_057728	Q569H4	PRR16_HUMAN	proline rich 16	258	Pro-rich.									pancreas(2)|ovary(1)	3		all_cancers(142;0.0464)|Prostate(80;0.00446)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.000126)|Epithelial(69;0.000331)|all cancers(49;0.00169)		CCCCATCTCCCTCCTTTCCCA	0.537													9	7					0	0	0.000442599	0	0
GRAMD3	65983	broad.mit.edu	37	5	125809035	125809035	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:125809035C>T	uc003ktu.2	+	5	891	c.461C>T	c.(460-462)TCC>TTC	p.S154F	GRAMD3_uc011cwt.1_Missense_Mutation_p.S169F|GRAMD3_uc011cwv.1_Missense_Mutation_p.S162F|GRAMD3_uc011cww.1_Missense_Mutation_p.S50F|GRAMD3_uc011cwx.1_RNA|GRAMD3_uc011cwy.1_Missense_Mutation_p.S45F|GRAMD3_uc011cwz.1_Missense_Mutation_p.S138F|GRAMD3_uc011cwu.1_Missense_Mutation_p.S138F	NM_023927	NP_076416	Q96HH9	GRAM3_HUMAN	GRAM domain containing 3 isoform 2	154	GRAM.									central_nervous_system(1)	1		Prostate(80;0.0928)	KIRC - Kidney renal clear cell carcinoma(527;0.0584)|Kidney(363;0.0934)	Epithelial(69;0.0401)|OV - Ovarian serous cystadenocarcinoma(64;0.0604)|all cancers(49;0.108)		TGTTTTCATTCCAAAGTCTTT	0.299													16	51					0	0	0.00074312	0	0
MEGF10	84466	broad.mit.edu	37	5	126734473	126734473	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:126734473C>T	uc003kuh.3	+	8	1127	c.765C>T	c.(763-765)TGC>TGT	p.C255C	MEGF10_uc010jdc.1_Silent_p.C255C|MEGF10_uc010jdd.1_Silent_p.C255C|MEGF10_uc003kui.3_Silent_p.C255C	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	255	Extracellular (Potential).|Necessary for interaction with AP2M1, self-assembly and formation of the irregular, mosaic-like adhesion pattern.|EGF-like 4.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		AATGCTCTTGCCCTTCTGGCT	0.517													35	13					0	0	0.00375469	0	0
MEGF10	84466	broad.mit.edu	37	5	126754812	126754812	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:126754812G>C	uc003kuh.3	+	12	1668	c.1306G>C	c.(1306-1308)GGA>CGA	p.G436R	MEGF10_uc010jdc.1_Missense_Mutation_p.G436R|MEGF10_uc010jdd.1_Missense_Mutation_p.G436R|MEGF10_uc003kui.3_Missense_Mutation_p.G436R	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	436	Extracellular (Potential).|Necessary for interaction with AP2M1, self-assembly and formation of the irregular, mosaic-like adhesion pattern.|EGF-like 7.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		GCCTGTCTAGGGAATTGACTG	0.428													3	110					0	0	6.4e-05	0	0
FBN2	2201	broad.mit.edu	37	5	127674668	127674668	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:127674668G>A	uc003kuu.2	-	26	3868	c.3429C>T	c.(3427-3429)TTC>TTT	p.F1143F	FBN2_uc003kuv.2_Silent_p.F1110F	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1143	EGF-like 16; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		CATAGCCTTCGAAGCACTCGC	0.502													31	18					0	0	0.00178596	0	0
FBN2	2201	broad.mit.edu	37	5	127681079	127681079	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:127681079C>T	uc003kuu.2	-	24	3626	c.3187G>A	c.(3187-3189)GAT>AAT	p.D1063N	FBN2_uc003kuv.2_Missense_Mutation_p.D1030N	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1063					bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		GTAAGAACATCCCCTCGGTTA	0.597													31	71					0	0	0.00283554	0	0
ADAMTS19	171019	broad.mit.edu	37	5	129037128	129037128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:129037128G>A	uc003kvb.1	+	20	2984	c.2984G>A	c.(2983-2985)GGA>GAA	p.G995E	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	995	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		TGTGGAAAAGGAATGCAGAGC	0.488													17	55					0	0	0.00121646	0	0
FAM13B	51306	broad.mit.edu	37	5	137289982	137289982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:137289982G>A	uc003lbz.2	-	14	2059	c.1525C>T	c.(1525-1527)CAT>TAT	p.H509Y	FAM13B_uc003lcb.2_Missense_Mutation_p.H413Y|FAM13B_uc003lca.2_Missense_Mutation_p.H509Y	NM_016603	NP_057687	Q9NYF5	FA13B_HUMAN	hypothetical protein LOC51306 isoform 1	509					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						AAGGGGTGATGATTCATTCTT	0.448													14	42					0	0	0.00244969	0	0
PSD2	84249	broad.mit.edu	37	5	139193033	139193033	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:139193033G>A	uc003leu.1	+	3	716	c.511G>A	c.(511-513)GAC>AAC	p.D171N		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	171					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGATGAGAGCGACAGCTGCGT	0.657													15	39					0	0	0.00316338	0	0
IK	3550	broad.mit.edu	37	5	140041216	140041216	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:140041216G>A	uc003lgq.2	+	17	1535	c.1425G>A	c.(1423-1425)AAG>AAA	p.K475K		NM_006083	NP_006074	Q13123	RED_HUMAN	RED protein	475					cell-cell signaling|immune response	extracellular space|nucleus|soluble fraction				large_intestine(1)	1		all_hematologic(541;4.8e-07)|all_lung(500;0.000434)|Lung NSC(810;0.00161)|Breast(839;0.128)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTAACAAGAAGGGGCCCTTAG	0.493													11	6					0	0	0.00185496	0	0
PCDHA7	56141	broad.mit.edu	37	5	140216247	140216247	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:140216247C>T	uc003lhq.2	+	1	2279	c.2279C>T	c.(2278-2280)TCT>TTT	p.S760F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.S760F	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	760	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGGTGTGCTCTGGGGAGGGC	0.572													13	22					0	0	0.00136819	0	0
PCDHA8	56140	broad.mit.edu	37	5	140221000	140221000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:140221000C>T	uc003lhs.2	+	1	94	c.94C>T	c.(94-96)CAC>TAC	p.H32Y	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.H32Y	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	32	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGGCCAGCTCCACTACTCCGT	0.642													18	43					0	0	0.000566183	0	0
PCDHA8	56140	broad.mit.edu	37	5	140221068	140221068	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:140221068G>A	uc003lhs.2	+	1	162	c.162G>A	c.(160-162)CTG>CTA	p.L54L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Silent_p.L54L	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	54	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCTGGGGCTGGAGCTGGCGG	0.637													42	73					0	0	0.00222228	0	0
PCDHA10	56139	broad.mit.edu	37	5	140237415	140237415	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:140237415C>T	uc003lhx.2	+	1	1782	c.1782C>T	c.(1780-1782)CGC>CGT	p.R594R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc011dad.1_Silent_p.R594R	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	594	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTAAGGTGCGCGCAGTGGACG	0.672													14	23					0	0	0.00185496	0	0
PCDHA11	56138	broad.mit.edu	37	5	140248820	140248820	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:140248820C>T	uc003lia.2	+	1	990	c.132C>T	c.(130-132)TTC>TTT	p.F44F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Silent_p.F44F	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	44	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGGCACCTTCGTGGGCCGCA	0.652													40	70					0	0	0.00195071	0	0
PCDHA11	56138	broad.mit.edu	37	5	140249705	140249705	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:140249705C>T	uc003lia.2	+	1	1875	c.1017C>T	c.(1015-1017)ATC>ATT	p.I339I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Silent_p.I339I	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	339	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGTGGAAATCTTGGACACCA	0.493													30	17					0	0	0.00209593	0	0
PCDHA12	56137	broad.mit.edu	37	5	140256462	140256462	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:140256462C>T	uc003lic.2	+	1	1532	c.1405C>T	c.(1405-1407)CCG>TCG	p.P469S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.P469S	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	469	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAGAACAACCCGCCGGGCTG	0.662													33	57					0	0	0.00283554	0	0
PCDHB1	29930	broad.mit.edu	37	5	140431494	140431494	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:140431494C>T	uc003lik.1	+	1	516	c.439C>T	c.(439-441)CCT>TCT	p.P147S		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	147	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGAGAGCACCCCTTTGGGTTC	0.532													23	13					0	0	0.00332997	0	0
PCDHB4	56131	broad.mit.edu	37	5	140501824	140501824	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:140501824G>A	uc003lip.1	+	1	244	c.244G>A	c.(244-246)GAT>AAT	p.D82N		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	82	Cadherin 1.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCAGACTGGAGATTTGCTTCT	0.547													18	39					0	0	0.000958276	0	0
SLC25A2	83884	broad.mit.edu	37	5	140682655	140682655	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:140682655C>T	uc003ljf.2	-	1	958	c.778G>A	c.(778-780)GAA>AAA	p.E260K		NM_031947	NP_114153	Q9BXI2	ORNT2_HUMAN	solute carrier family 25 member 2	260	Solcar 3.				mitochondrial ornithine transport|urea cycle	integral to membrane|mitochondrial inner membrane	L-ornithine transmembrane transporter activity			ovary(1)	1		all_lung(500;0.000249)|Lung NSC(810;0.0011)|Ovarian(839;0.00556)|Breast(839;0.0173)|all_hematologic(541;0.152)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.00204)	L-Ornithine(DB00129)	ACTATTCCTTCATTTCTCACA	0.423													10	31					0	0	0.000442599	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140723605	140723606	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:140723605_140723606CC>TT	uc003ljm.1	+	1	5_6	c.5_6CC>TT	c.(4-6)ACC>ATT	p.T2I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_5'UTR|PCDHGA3_uc011dap.1_Missense_Mutation_p.T2I	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	2					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGGAAATGACCAATTGCCTGA	0.52											OREG0016855	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	57	137					0	0	6.4e-05	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140751143	140751143	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:140751143C>T	uc003ljw.1	+	1	1182	c.1182C>T	c.(1180-1182)ATC>ATT	p.I394I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Silent_p.I394I|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	394	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTTTAAAATCGTTCAAGATA	0.453													12	30					0	0	0.00136819	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140755310	140755310	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:140755310G>A	uc003ljy.1	+	1	1660	c.1660G>A	c.(1660-1662)GAC>AAC	p.D554N	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Missense_Mutation_p.D554N	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	554	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTTTGTGCTGGACCAGAATGA	0.637													30	96					0	0	0.00283554	0	0
PCDHGB5	56101	broad.mit.edu	37	5	140778104	140778104	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:140778104C>T	uc003lkf.1	+	1	410	c.410C>T	c.(409-411)TCC>TTC	p.S137F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Missense_Mutation_p.S137F	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	137	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGCAAAATTCCTTTGAGCTG	0.413													10	30					0	0	0.00316338	0	0
PCDHGA9	56107	broad.mit.edu	37	5	140784900	140784900	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:140784900C>T	uc003lkh.1	+	1	2381	c.2381C>T	c.(2380-2382)TCT>TTT	p.S794F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Missense_Mutation_p.S794F|PCDHGB6_uc003lki.1_5'Flank|PCDHGB6_uc003lkj.1_5'Flank	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	794	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGTGCGTCTCTGTTGATTCC	0.398													20	36					0	0	0.00121646	0	0
DIAPH1	1729	broad.mit.edu	37	5	140953720	140953720	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:140953720G>A	uc003llb.3	-	16	1838	c.1697C>T	c.(1696-1698)TCT>TTT	p.S566F	DIAPH1_uc003llc.3_Missense_Mutation_p.S557F|DIAPH1_uc010jgc.1_Missense_Mutation_p.S5F	NM_005219	NP_005210	O60610	DIAP1_HUMAN	diaphanous 1 isoform 1	566	Potential.				regulation of microtubule-based process|sensory perception of sound	cytoplasm|cytoskeleton|ruffle membrane	actin binding|receptor binding|Rho GTPase binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCTGCCGCAGAGAGGGAAGC	0.483													20	31					0	0	0.00278032	0	0
KIAA0141	9812	broad.mit.edu	37	5	141318137	141318137	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:141318137C>T	uc003lls.2	+	12	1483	c.1361C>T	c.(1360-1362)CCC>CTC	p.P454L	KIAA0141_uc003llt.2_Missense_Mutation_p.P454L|KIAA0141_uc003llu.1_RNA	NM_001142603	NP_001136075	Q14154	DELE_HUMAN	hypothetical protein LOC9812 precursor	454					apoptosis|regulation of caspase activity	mitochondrion	protein binding			skin(1)	1		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCTCCAGCCCCTCCCTCTGC	0.562													46	31					0	0	0.00361006	0	0
SH3RF2	153769	broad.mit.edu	37	5	145393508	145393508	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:145393508C>T	uc003lnt.2	+	5	1181	c.943C>T	c.(943-945)CCT>TCT	p.P315S	SH3RF2_uc011dbl.1_Missense_Mutation_p.P315S	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	315							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGTCCATTCTCCTTCAGGGCG	0.577													43	30					0	0	0.00361006	0	0
C5orf46	389336	broad.mit.edu	37	5	147276571	147276571	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:147276571T>G	uc010jgp.2	-	3	286	c.249A>C	c.(247-249)AAA>AAC	p.K83N	C5orf46_uc003lou.2_Missense_Mutation_p.K83N	NM_206966	NP_996849	Q6UWT4	CE046_HUMAN	hypothetical protein LOC389336 precursor	83						extracellular region					0						TTGATGAATGTTTTCCTTCAT	0.303													2	8					0	0	6.4e-05	0	0
SPINK6	404203	broad.mit.edu	37	5	147585614	147585614	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:147585614G>A	uc003lpa.2	+	2	330	c.74G>A	c.(73-75)GGA>GAA	p.G25E		NM_205841	NP_995313	Q6UWN8	ISK6_HUMAN	serine protease inhibitor, Kazal type 6	25	Kazal-like.					extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCAGTCAGGGAGGACAGGTC	0.388													78	44					0	0	0.00361006	0	0
ARHGEF37	389337	broad.mit.edu	37	5	149008485	149008485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:149008485G>A	uc003lra.1	+	12	1838	c.1774G>A	c.(1774-1776)GAG>AAG	p.E592K		NM_001001669	NP_001001669	A1IGU5	ARH37_HUMAN	hypothetical protein LOC389337	592					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0						TCTAACACCGGAGCCCAGCCC	0.612													9	17					0	0	0.000442599	0	0
SYNPO	11346	broad.mit.edu	37	5	150028561	150028561	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:150028561C>T	uc003lsn.2	+	3	1830	c.1456C>T	c.(1456-1458)CCT>TCT	p.P486S	SYNPO_uc003lso.3_Missense_Mutation_p.P242S|SYNPO_uc003lsp.2_Missense_Mutation_p.P242S	NM_001109974	NP_001103444	Q8N3V7	SYNPO_HUMAN	synaptopodin isoform B	486					positive regulation of actin filament bundle assembly|regulation of stress fiber assembly	actin cytoskeleton|cytoplasm|dendritic spine|perikaryon|postsynaptic density|postsynaptic membrane|tight junction	actin binding|protein binding			large_intestine(1)	1		Medulloblastoma(196;0.134)|all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GACGGCCAGGCCTTTTGGGAT	0.647													23	40					0	0	0.00188189	0	0
DCTN4	51164	broad.mit.edu	37	5	150102495	150102495	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:150102495G>A	uc003lsv.2	-	9	984	c.882C>T	c.(880-882)ATC>ATT	p.I294I	DCTN4_uc003lsu.2_Silent_p.I237I|DCTN4_uc010jhi.2_Silent_p.I301I	NM_016221	NP_057305	Q9UJW0	DCTN4_HUMAN	dynactin 4 (p62) isoform b	294						centrosome|nucleus	protein N-terminus binding			central_nervous_system(1)	1		Medulloblastoma(196;0.167)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TTTTGAATTTGATTGACGTTG	0.338													17	5					0	0	0.00152264	0	0
FAT2	2196	broad.mit.edu	37	5	150945775	150945775	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:150945775G>A	uc003lue.3	-	1	2731	c.2718C>T	c.(2716-2718)TTC>TTT	p.F906F	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Silent_p.F906F	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	906	Extracellular (Potential).|Cadherin 7.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CAGTGACAGAGAAGAGCTGGT	0.552													8	28					0	0	0.000274275	0	0
FAT2	2196	broad.mit.edu	37	5	150946634	150946634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:150946634G>A	uc003lue.3	-	1	1872	c.1859C>T	c.(1858-1860)TCC>TTC	p.S620F	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Missense_Mutation_p.S620F	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	620	Extracellular (Potential).|Cadherin 5.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GCGTTTGAGGGATATCACTCC	0.418													41	25					0	0	0.00148497	0	0
GLRA1	2741	broad.mit.edu	37	5	151304061	151304061	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:151304061A>G	uc003lut.2	-	1	337	c.50T>C	c.(49-51)TTC>TCC	p.F17S	GLRA1_uc003lur.2_Missense_Mutation_p.F17S|GLRA1_uc003lus.2_5'UTR	NM_001146040	NP_001139512	P23415	GLRA1_HUMAN	glycine receptor, alpha 1 isoform 1 precursor	17					muscle contraction|negative regulation of transmission of nerve impulse|neuropeptide signaling pathway|positive regulation of acrosome reaction|regulation of membrane potential|startle response	cell junction|chloride channel complex|integral to plasma membrane|intracellular membrane-bounded organelle|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|protein binding|receptor activity|taurine binding|transmitter-gated ion channel activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.0341)|Medulloblastoma(196;0.0912)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Ethanol(DB00898)|Glycine(DB00145)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	ATACCTGAAGAATACAATGGT	0.458													19	46					0	0	0.00332997	0	0
NMUR2	56923	broad.mit.edu	37	5	151784643	151784643	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:151784643G>A	uc003luv.2	-	1	198	c.32C>T	c.(31-33)TCC>TTC	p.S11F		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	11	Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity			ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			GTAGATCCAGGAAGCATTCTG	0.498													25	86					0	0	0.00106085	0	0
GRIA1	2890	broad.mit.edu	37	5	153029980	153029980	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:153029980G>A	uc003lva.3	+	4	916	c.551G>A	c.(550-552)GGA>GAA	p.G184E	GRIA1_uc003luy.3_Missense_Mutation_p.G184E|GRIA1_uc003luz.3_Missense_Mutation_p.G89E|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.G104E|GRIA1_uc011dcx.1_Missense_Mutation_p.G115E|GRIA1_uc011dcy.1_Missense_Mutation_p.G194E|GRIA1_uc011dcz.1_Missense_Mutation_p.G194E|GRIA1_uc010jia.1_Missense_Mutation_p.G164E	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	184	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	ACAGAGGAGGGATACCGGATG	0.512													23	36					0	0	0.00395357	0	0
GRIA1	2890	broad.mit.edu	37	5	153077667	153077667	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:153077667G>A	uc003lva.3	+	9	1563	c.1198G>A	c.(1198-1200)GAT>AAT	p.D400N	GRIA1_uc003luy.3_Missense_Mutation_p.D400N|GRIA1_uc003luz.3_Missense_Mutation_p.D305N|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.D320N|GRIA1_uc011dcx.1_Missense_Mutation_p.D331N|GRIA1_uc011dcy.1_Missense_Mutation_p.D410N|GRIA1_uc011dcz.1_Missense_Mutation_p.D410N|GRIA1_uc010jia.1_Missense_Mutation_p.D380N	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	400	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	AGCTGGGGGCGATAATTCAAG	0.478													16	23					0	0	0.000566183	0	0
HAVCR2	84868	broad.mit.edu	37	5	156514250	156514251	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:156514250_156514251CC>AA	uc003lwk.1	-	7	912_913	c.768_769GG>TT	c.(766-771)GAGGGA>GATTGA	p.256_257EG>D*		NM_032782	NP_116171	Q8TDQ0	HAVR2_HUMAN	T cell immunoglobulin mucin 3 precursor	256_257	Cytoplasmic (Potential).					integral to membrane					0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GAGCGAATTCCCTCTGCTACTG	0.46													12	472					0	0	6.4e-05	0	0
FAM71B	153745	broad.mit.edu	37	5	156592780	156592780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:156592780C>T	uc003lwn.2	-	1	500	c.400G>A	c.(400-402)GAT>AAT	p.D134N		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	134						nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TTCTCATGATCGTGGATGGAG	0.527													117	346					0	0	0.00361006	0	0
CYFIP2	26999	broad.mit.edu	37	5	156760402	156760402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:156760402C>T	uc003lwq.2	+	23	2471	c.2333C>T	c.(2332-2334)TCC>TTC	p.S778F	CYFIP2_uc011ddn.1_Missense_Mutation_p.S752F|CYFIP2_uc011ddo.1_Missense_Mutation_p.S582F|CYFIP2_uc003lwr.2_Missense_Mutation_p.S778F|CYFIP2_uc003lws.2_Missense_Mutation_p.S778F|CYFIP2_uc003lwt.2_Missense_Mutation_p.S681F|CYFIP2_uc011ddp.1_Missense_Mutation_p.S512F	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	803					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ATGTATAAATCCTTGGACCAA	0.473													142	294					0	0	0.00361006	0	0
ADAM19	8728	broad.mit.edu	37	5	156929909	156929909	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:156929909G>A	uc003lwz.2	-	12	1274	c.1210C>T	c.(1210-1212)CTC>TTC	p.L404F	ADAM19_uc003lww.1_Missense_Mutation_p.L137F|ADAM19_uc003lwy.2_Missense_Mutation_p.L3F|ADAM19_uc011ddr.1_Missense_Mutation_p.L335F	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	404	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ATGTTGGAGAGACACATTCCA	0.547													26	55					0	0	0.000878237	0	0
EBF1	1879	broad.mit.edu	37	5	158141181	158141181	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:158141181G>A	uc010jip.2	-	12	1437	c.1135C>T	c.(1135-1137)CTC>TTC	p.L379F	EBF1_uc011ddw.1_Missense_Mutation_p.L247F|EBF1_uc011ddx.1_Missense_Mutation_p.L380F|EBF1_uc003lxl.3_Missense_Mutation_p.L348F	NM_024007	NP_076870	Q9UH73	COE1_HUMAN	early B-cell factor	379					multicellular organismal development	nucleus	DNA binding|metal ion binding		HMGA2/EBF1(2)	soft_tissue(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Acute lymphoblastic leukemia(3;2.99e-06)|all_hematologic(3;0.000772)|Medulloblastoma(196;0.037)|all_neural(177;0.143)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GCCCTTTTGAGTATTACTTCC	0.488			T	HMGA2	lipoma								68	124					0	0	0.00361006	0	0
UBLCP1	134510	broad.mit.edu	37	5	158699032	158699032	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:158699032C>T	uc003lxq.2	+	6	776	c.450C>T	c.(448-450)GAC>GAT	p.D150D		NM_145049	NP_659486	Q8WVY7	UBCP1_HUMAN	ubiquitin-like domain containing CTD phosphatase	150	FCP1 homology.					nucleus	phosphoprotein phosphatase activity			ovary(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0523)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TTCTTTTAGACCACAGGTCTT	0.303													15	38					0	0	0.00316338	0	0
FABP6	2172	broad.mit.edu	37	5	159661850	159661850	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:159661850G>A	uc003lya.1	+	3	395	c.267G>A	c.(265-267)GGG>GGA	p.G89G	FABP6_uc003lxx.1_Silent_p.G138G|FABP6_uc003lxz.1_Silent_p.G138G	NM_001445	NP_001436	P51161	FABP6_HUMAN	gastrotropin isoform 2	89					bile acid and bile salt transport|bile acid metabolic process|negative regulation of cell proliferation	cytosol	transporter activity				0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGGAGGGCGGGAAGCTGGTGG	0.408													9	29					0	0	0.000673444	0	0
GABRB2	2561	broad.mit.edu	37	5	160721205	160721205	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:160721205C>T	uc003lys.1	-	11	1640	c.1422G>A	c.(1420-1422)CTG>CTA	p.L474L	GABRB2_uc011deh.1_Silent_p.L275L|GABRB2_uc003lyr.1_Silent_p.L436L|GABRB2_uc003lyt.1_Silent_p.L436L|GABRB2_uc010jiu.1_Silent_p.L373L	NM_021911	NP_068711	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	474	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity				0	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	TGGTGATTTTCAGTTGGGAGG	0.502													5	21					0	0	0.000602214	0	0
GABRA6	2559	broad.mit.edu	37	5	161113235	161113235	+	Splice_Site	SNP	G	A	A	rs140035570		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:161113235G>A	uc003lyu.2	+	2	377	c.39_splice	c.e2-1	p.W13_splice		NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6						gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TCTACACACAGGCTAGAAAAT	0.448										TCGA Ovarian(5;0.080)			16	29					0	0	0.000566183	0	0
GABRA6	2559	broad.mit.edu	37	5	161119131	161119131	+	Silent	SNP	G	A	A	rs144044129		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:161119131G>A	uc003lyu.2	+	8	1349	c.1011G>A	c.(1009-1011)AGG>AGA	p.R337R	GABRA6_uc003lyv.2_Silent_p.R108R	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	337	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity	p.R337R(1)		ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	AGGCCAAAAGGAAGGCACAGT	0.418										TCGA Ovarian(5;0.080)			22	48					0	0	0.00395357	0	0
ODZ2	57451	broad.mit.edu	37	5	167420183	167420183	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:167420183C>T	uc010jjd.2	+	5	1182	c.1182C>T	c.(1180-1182)TTC>TTT	p.F394F	ODZ2_uc003lzq.2_Silent_p.F273F|ODZ2_uc003lzr.3_Silent_p.F203F	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TGGCGTATTTCATAGGTAAGT	0.532													19	30					0	0	0.00121646	0	0
ODZ2	57451	broad.mit.edu	37	5	167674098	167674098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:167674098G>A	uc010jjd.2	+	27	6127	c.6127G>A	c.(6127-6129)GTC>ATC	p.V2043I	ODZ2_uc003lzr.3_Missense_Mutation_p.V1813I|ODZ2_uc003lzt.3_Missense_Mutation_p.V1416I|ODZ2_uc010jje.2_Missense_Mutation_p.V1307I	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		CTTGAAGATGGTCAACCTCCA	0.527													38	25					0	0	0.00111076	0	0
WWC1	23286	broad.mit.edu	37	5	167868776	167868776	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:167868776G>A	uc003lzu.2	+	16	2463	c.2370G>A	c.(2368-2370)AAG>AAA	p.K790K	WWC1_uc003lzv.2_Silent_p.K790K|WWC1_uc011den.1_Silent_p.K790K|WWC1_uc003lzw.2_Silent_p.K589K|WWC1_uc010jjf.1_Silent_p.K57K	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	790					cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		AATACTTGAAGAAACAGAGCA	0.622													12	28					0	0	0.00136819	0	0
SLIT3	6586	broad.mit.edu	37	5	168093514	168093514	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:168093514G>A	uc003mab.2	-	36	4937	c.4517C>T	c.(4516-4518)TCG>TTG	p.S1506L	SLIT3_uc010jjg.2_Missense_Mutation_p.S1513L	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1506	CTCK.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TTCTACAAACGAGGAGCCGTC	0.637													11	11					0	0	0.000978159	0	0
SLIT3	6586	broad.mit.edu	37	5	168199797	168199797	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:168199797A>G	uc003mab.2	-	14	1868	c.1448T>C	c.(1447-1449)TTC>TCC	p.F483S	SLIT3_uc010jjg.2_Missense_Mutation_p.F483S|SLIT3_uc010jji.2_Missense_Mutation_p.F483S|SLIT3_uc003mac.1_Missense_Mutation_p.F280S	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	483	LRRCT 2.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGAGCAGCGGAACTTCTTGCT	0.607													14	37					0	0	0.000566183	0	0
SLIT3	6586	broad.mit.edu	37	5	168620526	168620526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:168620526G>A	uc003mab.2	-	4	790	c.370C>T	c.(370-372)CTT>TTT	p.L124F	SLIT3_uc010jjg.2_Missense_Mutation_p.L124F|SLIT3_uc010jji.2_Missense_Mutation_p.L124F	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	124	LRR 3.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AATTCTGGAAGGACTTGCAGC	0.473													49	38					0	0	0.00361006	0	0
RANBP17	64901	broad.mit.edu	37	5	170345744	170345744	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:170345744G>A	uc003mba.2	+	10	998	c.982G>A	c.(982-984)GAA>AAA	p.E328K	RANBP17_uc003max.1_RNA|RANBP17_uc003may.1_RNA|RANBP17_uc003maz.1_RNA|RANBP17_uc010jjr.1_RNA	NM_022897	NP_075048	Q9H2T7	RBP17_HUMAN	RAN binding protein 17	328					mRNA transport|protein import into nucleus|transmembrane transport	cytoplasm|nuclear pore	GTP binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00751)|all_lung(126;0.0123)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TAATTATCATGAATTTTGTCG	0.323			T	TRD@	ALL								12	37					0	0	0.00244969	0	0
C5orf41	153222	broad.mit.edu	37	5	172517681	172517681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:172517681C>T	uc003mch.2	+	4	803	c.499C>T	c.(499-501)CCC>TCC	p.P167S	C5orf41_uc003mcg.2_Missense_Mutation_p.P167S|C5orf41_uc003mcf.2_Missense_Mutation_p.P167S|C5orf41_uc011dfd.1_Missense_Mutation_p.P167S	NM_153607	NP_705835	Q8IUR6	CE041_HUMAN	luman-recruiting factor	167							protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Renal(175;0.000159)|Lung NSC(126;0.00223)|all_lung(126;0.00391)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CAAACAAAATCCCTTACCCTC	0.433													17	24					0	0	0.000566183	0	0
C5orf25	375484	broad.mit.edu	37	5	175717561	175717561	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:175717561C>T	uc003mds.3	+	4	1384	c.977C>T	c.(976-978)TCA>TTA	p.S326L	C5orf25_uc003mdt.3_Intron|C5orf25_uc003mdr.3_Intron|C5orf25_uc011dfk.1_Missense_Mutation_p.S345L|uc003mdu.1_Missense_Mutation_p.S237L			Q8NDZ2	CE025_HUMAN	RecName: Full=Uncharacterized protein C5orf25;	326	Pro-rich.										0	all_cancers(89;0.00381)|Renal(175;0.000269)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.119)		GTGTTACATTCACCTGGAGAC	0.532													27	61					0	0	0.00106085	0	0
CLTB	1212	broad.mit.edu	37	5	175824609	175824609	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:175824609G>A	uc003meh.2	-	5	638	c.463C>T	c.(463-465)CGG>TGG	p.R155W	CLTB_uc003mei.2_Missense_Mutation_p.R155W|CLTB_uc011dfn.1_RNA	NM_007097	NP_009028	P09497	CLCB_HUMAN	clathrin, light polypeptide isoform b	155	Involved in binding clathrin heavy chain.				intracellular protein transport|vesicle-mediated transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle	protein binding|structural molecule activity				0	all_cancers(89;0.00522)|Renal(175;0.000269)|Lung NSC(126;0.0105)|all_lung(126;0.0168)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.098)		CCCTCTCACCGGTTGTTGATC	0.602													22	53					0	0	0.00229938	0	0
RNF44	22838	broad.mit.edu	37	5	175958571	175958571	+	Missense_Mutation	SNP	G	A	A	rs144164161		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:175958571G>A	uc003mek.1	-	4	883	c.358C>T	c.(358-360)CCC>TCC	p.P120S	RNF44_uc011dfo.1_Missense_Mutation_p.P28S|RNF44_uc003mel.1_5'Flank	NM_014901	NP_055716	Q7L0R7	RNF44_HUMAN	ring finger protein 44	120	Pro-rich.						zinc ion binding				0	all_cancers(89;0.0029)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GTAGGCAAGGGGAAGCCTTGG	0.612													7	19					0	0	0.000274275	0	0
UNC5A	90249	broad.mit.edu	37	5	176295932	176295932	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:176295932C>T	uc003mey.2	+	5	880	c.688C>T	c.(688-690)CGC>TGC	p.R230C	UNC5A_uc003mex.1_Missense_Mutation_p.R230C|UNC5A_uc010jkg.1_Missense_Mutation_p.R190C	NM_133369	NP_588610	Q6ZN44	UNC5A_HUMAN	netrin receptor Unc5h1 precursor	230	Ig-like C2-type.|Extracellular (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane|plasma membrane				skin(1)	1	all_cancers(89;0.000119)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CGTGGCACGTCGCCGCAGCGC	0.657													15	18					0	0	0.00121646	0	0
DDX41	51428	broad.mit.edu	37	5	176941768	176941768	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:176941768G>A	uc003mho.2	-	9	890	c.869C>T	c.(868-870)CCA>CTA	p.P290L	DDX41_uc003mhm.2_Missense_Mutation_p.P70L|DDX41_uc003mhn.2_Missense_Mutation_p.P159L|DDX41_uc003mhp.2_Missense_Mutation_p.P159L|DDX41_uc003mhq.1_Missense_Mutation_p.P70L	NM_016222	NP_057306	Q9UJV9	DDX41_HUMAN	DEAD-box protein abstrakt	290	Helicase ATP-binding.				apoptosis|multicellular organismal development	catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding|zinc ion binding				0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.191)			GCGCAGGAGTGGTGAGCTGTC	0.657													41	68					0	0	0.00222228	0	0
LOC202181	202181	broad.mit.edu	37	5	177054540	177054540	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:177054540G>A	uc011dgc.1	-	2	333	c.205C>T	c.(205-207)CCC>TCC	p.P69S	LOC202181_uc011dgb.1_RNA	NM_198567	NP_940969			hypothetical protein LOC375484												0						GTCCCCAGGGGAAAATTCTCT	0.418													48	33					0	0	0.00361006	0	0
GFPT2	9945	broad.mit.edu	37	5	179743354	179743354	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:179743354G>A	uc003mlw.1	-	13	1358	c.1260C>T	c.(1258-1260)TTC>TTT	p.F420F		NM_005110	NP_005101	O94808	GFPT2_HUMAN	glutamine-fructose-6-phosphate transaminase 2	420	SIS 1.				dolichol-linked oligosaccharide biosynthetic process|energy reserve metabolic process|fructose 6-phosphate metabolic process|glutamine metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol	glutamine-fructose-6-phosphate transaminase (isomerizing) activity|sugar binding			ovary(1)|skin(1)	2	all_cancers(89;4.97e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	Medulloblastoma(196;0.0392)|all_neural(177;0.0529)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		L-Glutamine(DB00130)	ACTGGCTGATGAAAAAGCAAA	0.493													7	23					0	0	0.00307968	0	0
BTNL3	10917	broad.mit.edu	37	5	180432702	180432702	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr5:180432702C>T	uc003mmr.2	+	8	1359	c.1231C>T	c.(1231-1233)CTG>TTG	p.L411L	BTNL3_uc010jlp.2_Silent_p.L196L	NM_197975	NP_932079	Q6UXE8	BTNL3_HUMAN	butyrophilin-like 3 precursor	411	B30.2/SPRY.|Cytoplasmic (Potential).				lipid metabolic process	integral to membrane					0	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.00336)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)|all_lung(500;0.248)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000272)			AGGGGTCTTCCTGGACTATGA	0.478													13	27					0	0	0.00244969	0	0
MYLK4	340156	broad.mit.edu	37	6	2683260	2683260	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:2683260G>A	uc003mty.3	-	7	979	c.682C>T	c.(682-684)CTG>TTG	p.L228L		NM_001012418	NP_001012418	Q86YV6	MYLK4_HUMAN	myosin light chain kinase family, member 4	228	Protein kinase.						ATP binding|protein serine/threonine kinase activity			breast(3)|ovary(1)	4	Ovarian(93;0.0412)	all_hematologic(90;0.0897)				CTTACCTTCAGGTCCAAGTGG	0.478													30	98					0	0	0.00209593	0	0
DSP	1832	broad.mit.edu	37	6	7580358	7580358	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:7580358C>T	uc003mxp.1	+	23	4214	c.3935C>T	c.(3934-3936)TCC>TTC	p.S1312F	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1312	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		CACAAGCAGTCCCTGGAGGAG	0.532													97	42					0	0	0.00361006	0	0
DSP	1832	broad.mit.edu	37	6	7584062	7584062	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:7584062G>A	uc003mxp.1	+	24	6846	c.6567G>A	c.(6565-6567)CGG>CGA	p.R2189R	DSP_uc003mxq.1_Silent_p.R1590R	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2189	Plectin 5.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TGAAGGAACGGTGCAGAATCG	0.468													23	84					0	0	0.00278032	0	0
SYCP2L	221711	broad.mit.edu	37	6	10894142	10894142	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:10894142C>T	uc003mzo.2	+	3	417	c.121C>T	c.(121-123)CAG>TAG	p.Q41*	SYCP2L_uc011dim.1_RNA	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	41						nucleus				ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			TAAAGGATTTCAGAAAATAAA	0.308													30	8					0	0	0.00178596	0	0
HIVEP1	3096	broad.mit.edu	37	6	12122173	12122173	+	Silent	SNP	C	T	T	rs34746669		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:12122173C>T	uc003nac.2	+	4	2324	c.2145C>T	c.(2143-2145)ACC>ACT	p.T715T	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	715					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				CTCTTGTCACCACGTCAACAC	0.527													9	38					0	0	0.000978159	0	0
ATXN1	6310	broad.mit.edu	37	6	16327105	16327105	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:16327105G>A	uc003nbt.2	-	8	2408	c.1437C>T	c.(1435-1437)CCC>CCT	p.P479P	ATXN1_uc010jpi.2_Silent_p.P479P|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	479					cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				CCAGGTGCTGGGGCAGGCTGC	0.672													48	151					0	0	0.00361006	0	0
CAP2	10486	broad.mit.edu	37	6	17426906	17426906	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:17426906G>A	uc003ncb.2	+	3	450	c.207G>A	c.(205-207)GGG>GGA	p.G69G	CAP2_uc010jpk.1_RNA|CAP2_uc011dja.1_Silent_p.G69G|CAP2_uc011djb.1_Silent_p.G69G|CAP2_uc011djc.1_Silent_p.G69G|CAP2_uc011djd.1_Silent_p.G69G	NM_006366	NP_006357	P40123	CAP2_HUMAN	adenylyl cyclase-associated protein 2	69					activation of adenylate cyclase activity|axon guidance|cytoskeleton organization|establishment or maintenance of cell polarity|signal transduction	plasma membrane	actin binding			ovary(1)	1	Breast(50;0.0333)|Ovarian(93;0.0386)	all_hematologic(90;0.0466)	all cancers(50;0.194)|Epithelial(50;0.227)			TCCTTGCTGGGGACGTGGAGA	0.517													15	54					0	0	0.00400662	0	0
DEK	7913	broad.mit.edu	37	6	18256622	18256622	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:18256622T>A	uc003ncr.1	-	5	615	c.422A>T	c.(421-423)CAA>CTA	p.Q141L	DEK_uc011djf.1_Missense_Mutation_p.Q107L|DEK_uc011djg.1_RNA	NM_003472	NP_003463	P35659	DEK_HUMAN	DEK oncogene isoform 1	141					chromatin modification|regulation of transcription from RNA polymerase II promoter|signal transduction|transcription from RNA polymerase II promoter|viral genome replication	nucleus	DNA binding|histone binding			kidney(1)	1	Ovarian(93;0.00769)|Breast(50;0.0495)	all_hematologic(90;0.053)	OV - Ovarian serous cystadenocarcinoma(7;0.00291)|all cancers(50;0.031)|Epithelial(50;0.0332)			CTTTTTATATTGGACACTTCC	0.264			T	NUP214	AML								12	52					0	0	0.00244969	0	0
CDKAL1	54901	broad.mit.edu	37	6	21108659	21108660	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:21108659_21108660CG>AT	uc003ndc.1	+	13	1438_1439	c.1264_1265CG>AT	c.(1264-1266)CGG>ATG	p.R422M	CDKAL1_uc003ndd.1_Missense_Mutation_p.R422M|CDKAL1_uc003nde.1_Intron|CDKAL1_uc003ndf.1_Missense_Mutation_p.R18M	NM_017774	NP_060244	Q5VV42	CDKAL_HUMAN	CDK5 regulatory subunit associated protein	422					RNA modification	integral to membrane	4 iron, 4 sulfur cluster binding|metal ion binding|transferase activity			ovary(2)	2	all_epithelial(95;0.0708)|Breast(50;0.131)|Ovarian(93;0.227)		OV - Ovarian serous cystadenocarcinoma(7;0.0241)|all cancers(50;0.123)|Epithelial(50;0.248)			AGATCTTTCTCGGGTGTTTCAT	0.292													10	516					0	0	6.4e-05	0	0
SOX4	6659	broad.mit.edu	37	6	21596018	21596018	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:21596018C>T	uc003ndi.2	+	1	2047	c.1253C>T	c.(1252-1254)TCC>TTC	p.S418F		NM_003107	NP_003098	Q06945	SOX4_HUMAN	SRY (sex determining region Y)-box 4	418					canonical Wnt receptor signaling pathway|cardiac ventricle formation|cellular response to glucose stimulus|DNA damage response, detection of DNA damage|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|glial cell development|glial cell proliferation|limb bud formation|negative regulation of apoptosis|negative regulation of cell proliferation|negative regulation of protein export from nucleus|negative regulation of protein ubiquitination|neural tube formation|neuroepithelial cell differentiation|noradrenergic neuron differentiation|positive regulation of apoptosis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|positive regulation of insulin secretion|positive regulation of N-terminal peptidyl-lysine acetylation|positive regulation of translation|pro-B cell differentiation|protein stabilization|skeletal system development|spinal cord motor neuron differentiation|sympathetic nervous system development|T cell differentiation	mitochondrion|nucleus	core promoter sequence-specific DNA binding|protein binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|RNA polymerase II transcription coactivator activity				0	Ovarian(93;0.163)		all cancers(50;0.0751)|Epithelial(50;0.155)			GAGAGCATGTCCCTGGGCAGC	0.488													13	40					0	0	0.000958276	0	0
PRL	5617	broad.mit.edu	37	6	22294638	22294638	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:22294638G>A	uc003ndp.2	-	2	723	c.204C>T	c.(202-204)TTC>TTT	p.F68F	PRL_uc003ndo.2_Silent_p.F69F|PRL_uc003ndq.2_Silent_p.F68F|PRL_uc003ndr.1_RNA	NM_000948	NP_000939	P01236	PRL_HUMAN	prolactin precursor	68					cell proliferation|cell surface receptor linked signaling pathway|female pregnancy|lactation|positive regulation of JAK-STAT cascade|regulation of multicellular organism growth	cytosol|extracellular region	hormone activity|prolactin receptor binding				0	Ovarian(93;0.163)					TGGTACTTACGAATTCGCTGA	0.527													25	83					0	0	0.00127121	0	0
LRRC16A	55604	broad.mit.edu	37	6	25492246	25492246	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:25492246C>T	uc011djw.1	+	15	1590	c.1214C>T	c.(1213-1215)TCT>TTT	p.S405F	LRRC16A_uc010jpx.2_Missense_Mutation_p.S405F|LRRC16A_uc010jpy.2_Missense_Mutation_p.S405F	NM_017640	NP_060110	Q5VZK9	LR16A_HUMAN	leucine rich repeat containing 16A	405	LRR 5.				actin filament organization|blood coagulation|cell migration|lamellipodium assembly|ruffle organization|urate metabolic process	cytosol|lamellipodium|nucleus				ovary(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4						ACTGTCTTCTCTCACCGGTAT	0.408													8	36					0	0	0.000274275	0	0
SCGN	10590	broad.mit.edu	37	6	25689431	25689431	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:25689431C>T	uc003nfb.2	+	8	762	c.559C>T	c.(559-561)CAA>TAA	p.Q187*	SCGN_uc010jpz.2_Nonsense_Mutation_p.Q78*	NM_006998	NP_008929	O76038	SEGN_HUMAN	secretagogin precursor	187						extracellular region|transport vesicle membrane	calcium ion binding			ovary(2)|pancreas(1)	3						CTTCCTTCTCCAATTTAAAAT	0.368													17	68					0	0	0.000958276	0	0
HIST1H2BA	255626	broad.mit.edu	37	6	25727414	25727414	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:25727414C>T	uc003nfd.2	+	1	278	c.278C>T	c.(277-279)TCC>TTC	p.S93F	HIST1H2AA_uc003nfc.2_5'Flank	NM_170610	NP_733759	Q96A08	H2B1A_HUMAN	histone cluster 1, H2ba	93					nucleosome assembly	nucleosome|nucleus	DNA binding			kidney(1)	1						ACCATTTCTTCCAGAGAGATT	0.517													20	70					0	0	0.00152264	0	0
SLC17A4	10050	broad.mit.edu	37	6	25776929	25776930	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:25776929_25776930CC>TT	uc003nfe.2	+	9	1213_1214	c.1094_1095CC>TT	c.(1093-1095)ACC>ATT	p.T365I	SLC17A4_uc011djx.1_Missense_Mutation_p.T135I|SLC17A4_uc003nff.1_Missense_Mutation_p.T126I|SLC17A4_uc003nfg.2_Missense_Mutation_p.T302I|SLC17A4_uc010jqa.2_Intron	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	365					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						AGACTCATCACCATCAGGAAAC	0.485													16	31					0	0	6.4e-05	0	0
SLC17A2	10246	broad.mit.edu	37	6	25915870	25915870	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:25915870G>A	uc011dkb.1	-	9	1151	c.1068C>T	c.(1066-1068)CTC>CTT	p.L356L	SLC17A2_uc011dkc.1_Intron|SLC17A2_uc003nfl.2_Intron			O00624	NPT3_HUMAN	SubName: Full=Solute carrier family 17 (Sodium phosphate), member 2, isoform CRA_b; SubName: Full=Putative uncharacterized protein SLC17A2;	356	Helical; (Potential).				phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			ovary(1)	1						ATGGAAGGAGGAGCCCTGGGC	0.493													11	30					0	0	0.00136819	0	0
SLC17A2	10246	broad.mit.edu	37	6	25916919	25916919	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:25916919G>A	uc011dkb.1	-	7	1007	c.924C>T	c.(922-924)ATC>ATT	p.I308I	SLC17A2_uc011dkc.1_Silent_p.I308I|SLC17A2_uc003nfl.2_Silent_p.I308I			O00624	NPT3_HUMAN	SubName: Full=Solute carrier family 17 (Sodium phosphate), member 2, isoform CRA_b; SubName: Full=Putative uncharacterized protein SLC17A2;	308					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			ovary(1)	1						TCACATCTCTGATGTTAACAT	0.353													21	68					0	0	0.00332997	0	0
BTN3A3	10384	broad.mit.edu	37	6	26444391	26444392	+	Missense_Mutation	DNP	TC	GT	GT	rs138755245		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:26444391_26444392TC>GT	uc003nhz.2	+	4	472_473	c.292_293TC>GT	c.(292-294)TCG>GTG	p.S98V	BTN3A3_uc003nia.2_Missense_Mutation_p.S56V|BTN3A3_uc011dkn.1_Missense_Mutation_p.S56V	NM_006994	NP_008925	O00478	BT3A3_HUMAN	butyrophilin, subfamily 3, member A3 isoform a	98	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane					0						AGGGAGAACTTCGATTCTGCGG	0.525													17	76					0	0	6.4e-05	0	0
ZNF391	346157	broad.mit.edu	37	6	27369044	27369044	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:27369044C>T	uc003njf.1	+	3	1413	c.895C>T	c.(895-897)CAC>TAC	p.H299Y		NM_001076781	NP_001070249	Q9UJN7	ZN391_HUMAN	zinc finger protein 391	299	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(2)|skin(1)	3						TCAGAGAATCCACAGTGGAGA	0.483													17	41					0	0	0.000958276	0	0
GPX6	257202	broad.mit.edu	37	6	28483479	28483479	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:28483479G>A	uc011dlj.1	-	1	92	c.42C>T	c.(40-42)TTC>TTT	p.F14F	GPX6_uc010jrg.1_RNA	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	14					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	AGCCAACCAGGAAAAACAGGA	0.547													11	27					0	0	0.00185496	0	0
SCAND3	114821	broad.mit.edu	37	6	28540556	28540556	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:28540556C>T	uc003nlo.2	-	4	3728	c.3110G>A	c.(3109-3111)AGA>AAA	p.R1037K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	1037					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						agagaataatcttgaattcaa	0													11	18					0	0	0.000978159	0	0
SCAND3	114821	broad.mit.edu	37	6	28540782	28540782	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:28540782A>G	uc003nlo.2	-	4	3502	c.2884T>C	c.(2884-2886)TTT>CTT	p.F962L		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	962					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						caaaatttaaattccaaacca	0													10	27					0	0	0.000442599	0	0
SCAND3	114821	broad.mit.edu	37	6	28542620	28542620	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:28542620C>T	uc003nlo.2	-	3	2480	c.1862G>A	c.(1861-1863)GGA>GAA	p.G621E		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	621					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ATGGATATTTCCATCACATGA	0.423													13	20					0	0	0.00244969	0	0
SCAND3	114821	broad.mit.edu	37	6	28542725	28542725	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:28542725G>A	uc003nlo.2	-	3	2375	c.1757C>T	c.(1756-1758)CCT>CTT	p.P586L		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	586					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						AGCCACCTTAGGAGTGACAGA	0.373													9	18					0	0	0.000274275	0	0
SCAND3	114821	broad.mit.edu	37	6	28543082	28543082	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:28543082C>T	uc003nlo.2	-	3	2018	c.1400G>A	c.(1399-1401)TGC>TAC	p.C467Y		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	467	Integrase catalytic.				DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CTGGCTTTGGCAGGTCTGAGA	0.428													7	32					0	0	0.00198382	0	0
OR5V1	81696	broad.mit.edu	37	6	29323035	29323035	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:29323035G>A	uc011dlo.1	-	1	1020	c.938C>T	c.(937-939)TCC>TTC	p.S313F		NM_030876	NP_110503	Q9UGF6	OR5V1_HUMAN	olfactory receptor, family 5, subfamily V,	313	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|kidney(1)	4						ATCCAAAGAGGAAATTGGTGG	0.358													21	18					0	0	0.00229938	0	0
OR10C1	442194	broad.mit.edu	37	6	29408455	29408455	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:29408455C>T	uc011dlp.1	+	1	663	c.663C>T	c.(661-663)CTC>CTT	p.L221L	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	221	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGCGTATCCTCGTTACCATCT	0.592													70	113					0	0	0.00361006	0	0
GABBR1	2550	broad.mit.edu	37	6	29572397	29572397	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:29572397G>A	uc003nmt.3	-	22	2922	c.2586C>T	c.(2584-2586)ACC>ACT	p.T862T	GABBR1_uc003nmp.3_Silent_p.T745T|GABBR1_uc003nms.3_Silent_p.T745T|GABBR1_uc003nmu.3_Silent_p.T800T|GABBR1_uc011dlr.1_Silent_p.T685T	NM_001470	NP_001461	Q9UBS5	GABR1_HUMAN	gamma-aminobutyric acid (GABA) B receptor 1	862	Cytoplasmic (Potential).				gamma-aminobutyric acid signaling pathway|negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|extracellular region|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(5)|liver(1)|skin(1)	7					Baclofen(DB00181)|Progabide(DB00837)	ATTCCCCTCGGGTGATCAGCC	0.587													52	32					0	0	0.00361006	0	0
ZFP57	346171	broad.mit.edu	37	6	29640907	29640907	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:29640907G>A	uc011dlw.1	-	4	1132	c.981C>T	c.(979-981)GCC>GCT	p.A327A	ZFP57_uc003nnl.3_Silent_p.A307A	NM_001109809	NP_001103279	Q9NU63	ZFP57_HUMAN	zinc finger protein 57 homolog	243					DNA methylation involved in embryo development|regulation of gene expression by genetic imprinting|transcription, DNA-dependent		DNA binding|zinc ion binding			ovary(3)|skin(2)	5						CCTGGGACCTGGCCACTGGTG	0.557													84	37					0	0	0.00361006	0	0
MDC1	9656	broad.mit.edu	37	6	30673675	30673675	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:30673675G>A	uc003nrg.3	-	10	3725	c.3285C>T	c.(3283-3285)TCC>TCT	p.S1095S	MDC1_uc003nrf.3_Intron|MDC1_uc011dmp.1_Silent_p.S702S	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	1095	Pro-rich.			Missing (in Ref. 2; CAH18685).	cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						CCAGCTCTGAGGACAAGGGAG	0.552								Other_conserved_DNA_damage_response_genes					74	156					0	0	0.00361006	0	0
MDC1	9656	broad.mit.edu	37	6	30680194	30680194	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:30680194G>A	uc003nrg.3	-	5	1965	c.1525C>T	c.(1525-1527)CAC>TAC	p.H509Y	MDC1_uc003nrf.3_Missense_Mutation_p.H163Y|MDC1_uc011dmp.1_Missense_Mutation_p.H381Y|MDC1_uc003nrh.1_Missense_Mutation_p.H381Y|MDC1_uc003nri.2_Missense_Mutation_p.H509Y	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	509	Required for nuclear localization (NLS1).				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						CTCTCCAGGTGGATCCCAGGT	0.488								Other_conserved_DNA_damage_response_genes					34	76					0	0	0.00375469	0	0
HLA-B	3106	broad.mit.edu	37	6	31323340	31323340	+	Missense_Mutation	SNP	G	A	A	rs77659523		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:31323340G>A	uc003nth.2	-	4	703	c.649C>T	c.(649-651)CCC>TCC	p.P217S	HLA-C_uc003ntb.2_RNA|HLA-C_uc003ntc.1_5'Flank|HLA-B_uc010jsm.1_RNA|HLA-B_uc011dnk.1_RNA|HLA-B_uc003ntf.2_Intron|HLA-B_uc003ntg.1_Missense_Mutation_p.P96S|HLA-B_uc003nti.1_RNA|HLA-B_uc010jsn.1_RNA|HLA-B_uc010jso.2_3'UTR	NM_005514	NP_005505	P01889	1B07_HUMAN	major histocompatibility complex, class I, B	217	Alpha-3.|Ig-like C1-type.|Extracellular (Potential).				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity				0						TCAGAGATGGGGTGGTGGGTC	0.582									Melanoma_Familial_Clustering_of|Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of				33	36					0	0	0.000953801	0	0
NCR3	259197	broad.mit.edu	37	6	31557900	31557900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:31557900G>A	uc003nuv.2	-	2	311	c.47C>T	c.(46-48)TCC>TTC	p.S16F	NCR3_uc003nuw.2_Missense_Mutation_p.S16F|NCR3_uc003nux.1_Missense_Mutation_p.S16F	NM_147130	NP_667341	O14931	NCTR3_HUMAN	natural cytotoxicity triggering receptor 3	16					cell recognition|immune response|inflammatory response|positive regulation of natural killer cell mediated cytotoxicity	integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						GAGAGCACAGGATCCTGGGGG	0.562													11	11					0	0	0.000673444	0	0
BAT2	7916	broad.mit.edu	37	6	31594924	31594925	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:31594924_31594925CC>TT	uc003nvb.3	+	11	1488_1489	c.1239_1240CC>TT	c.(1237-1242)CCCCCA>CCTTCA	p.P414S	BAT2_uc011dnv.1_RNA|BAT2_uc003nvc.3_Missense_Mutation_p.P414S	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	414	4 X 57 AA type A repeats.|2 X type B repeats.|2-1.					cytoplasm|nucleus	protein binding				0						CTCCCCTACCCCCACCTCACCG	0.658													7	10					0	0	6.4e-05	0	0
DOM3Z	1797	broad.mit.edu	37	6	31937781	31937781	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:31937781C>A	uc003nyo.1	-	6	1598	c.1064G>T	c.(1063-1065)TGG>TTG	p.W355L	DOM3Z_uc003nyp.1_Missense_Mutation_p.W355L|DOM3Z_uc003nyq.1_Missense_Mutation_p.W96L|DOM3Z_uc003nyr.1_Missense_Mutation_p.W355L|DOM3Z_uc003nys.1_3'UTR|STK19_uc003nyt.2_5'Flank|STK19_uc011dow.1_5'Flank|STK19_uc011dox.1_5'Flank|STK19_uc003nyv.2_5'Flank|STK19_uc003nyw.2_5'Flank|STK19_uc010jtn.1_5'Flank	NM_005510	NP_005501	O77932	DOM3Z_HUMAN	DOM-3 homolog Z	355							identical protein binding|metal ion binding|nucleotide binding				0						GCCAGGCTCCCAAGAGAAGAG	0.587													12	226					0.00010058	0.000274184	0.00136819	1	0
TNXB	7148	broad.mit.edu	37	6	32036660	32036660	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:32036660C>T	uc003nzl.2	-	16	6043	c.5841G>A	c.(5839-5841)GTG>GTA	p.V1947V		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2029	Fibronectin type-III 12.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CATACAGGGTCACCAGGTATC	0.542													124	147					0	0	0.00361006	0	0
TNXB	7148	broad.mit.edu	37	6	32038147	32038147	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:32038147C>T	uc003nzl.2	-	14	5237	c.5035G>A	c.(5035-5037)GAG>AAG	p.E1679K		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1761	Fibronectin type-III 10.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						ACCCACAGCTCCCCAAGGCGG	0.582													47	50					0	0	0.00361006	0	0
NOTCH4	4855	broad.mit.edu	37	6	32163318	32163318	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:32163318G>A	uc003obb.2	-	30	6047	c.5908C>T	c.(5908-5910)CCT>TCT	p.P1970S	GPSM3_uc003oax.3_5'Flank|GPSM3_uc003oay.3_5'Flank|GPSM3_uc003oaz.2_5'Flank|NOTCH4_uc011dpt.1_3'UTR|NOTCH4_uc003oba.2_Missense_Mutation_p.P630S|NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	1970	Cytoplasmic (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						GTAAGGCAAGGAGGCGGGATC	0.617													131	147					0	0	0.00361006	0	0
NOTCH4	4855	broad.mit.edu	37	6	32189026	32189026	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:32189026G>A	uc003obb.2	-	4	667	c.528C>T	c.(526-528)CCC>CCT	p.P176P	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Silent_p.P176P	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	176	Extracellular (Potential).|EGF-like 4.				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						ACTGGATCTGGGGGTATGTGG	0.612													150	173					0	0	0.00361006	0	0
C6orf10	10665	broad.mit.edu	37	6	32260952	32260952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:32260952C>T	uc011dpy.1	-	12	1671	c.1498G>A	c.(1498-1500)GAT>AAT	p.D500N	C6orf10_uc011dpx.1_Intron	NM_006781	NP_006772	Q5SRN2	CF010_HUMAN	chromosome 6 open reading frame 10	500	Lys-rich.					integral to membrane				skin(1)	1						ttttctttatcattatttcct	0.184													25	23					0	0	0.00278032	0	0
HLA-DQB1	3119	broad.mit.edu	37	6	32629941	32629941	+	Missense_Mutation	SNP	T	G	G	rs9274001		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:32629941T>G	uc003obw.2	-	3	546	c.464A>C	c.(463-465)TAT>TCT	p.Y155S	HLA-DQB1_uc010juc.1_Missense_Mutation_p.Y110S|HLA-DQB1_uc003obv.2_Missense_Mutation_p.Y155S|HLA-DQB1_uc011dqd.1_Missense_Mutation_p.Y155S|HLA-DQB1_uc011dqe.1_3'UTR	NM_002123	NP_002114	P01920	DQB1_HUMAN	major histocompatibility complex, class II, DQ	155	Extracellular (Potential).|Beta-2.|Ig-like C1-type.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CTGGCCTGGATAGAAATCTGT	0.562									Melanoma_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia|T-cell_Lymphoma_(Cutaneous)__Familial_Clustering_of|Sj_gren_syndrome				19	26					0	0	0.000958276	0	0
DAXX	1616	broad.mit.edu	37	6	33289089	33289089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:33289089G>A	uc003oec.2	-	3	667	c.463C>T	c.(463-465)CCC>TCC	p.P155S	DAXX_uc011drd.1_Missense_Mutation_p.P80S|DAXX_uc011dre.1_Missense_Mutation_p.P167S|DAXX_uc003oed.2_Missense_Mutation_p.P155S|DAXX_uc010juw.2_Missense_Mutation_p.P80S	NM_001350	NP_001341	Q9UER7	DAXX_HUMAN	death-domain associated protein isoform a	155	Necessary for interaction with USP7.				activation of JUN kinase activity|androgen receptor signaling pathway|apoptosis|induction of apoptosis via death domain receptors|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|regulation of protein ubiquitination|transcription, DNA-dependent	chromosome, centromeric region|cytosol|nucleolus|PML body	androgen receptor binding|heat shock protein binding|p53 binding|protein homodimerization activity|protein N-terminus binding|receptor signaling protein activity|transcription factor binding|ubiquitin protein ligase binding			pancreas(18)|ovary(2)|skin(2)|prostate(1)	23						TTCCCAGAGGGCTCATTGGAG	0.557			Mis|F|N		Pancreatic neuroendocrine tumors								25	37					0	0	0.000720815	0	0
C6orf125	84300	broad.mit.edu	37	6	33669180	33669180	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:33669180G>A	uc003ofa.1	-	2	197	c.156C>T	c.(154-156)GCC>GCT	p.A52A	C6orf125_uc003oez.1_5'Flank|C6orf125_uc010jve.1_RNA	NM_032340	NP_115716	Q9BRT2	CF125_HUMAN	hypothetical protein LOC84300	52											0						TCTGATCACAGGCCTCAGGCT	0.493													45	51					0	0	0.00361006	0	0
PPARD	5467	broad.mit.edu	37	6	35392531	35392531	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:35392531C>T	uc003okm.2	+	7	1362	c.1053C>T	c.(1051-1053)TTC>TTT	p.F351F	PPARD_uc003okl.2_Silent_p.F351F|PPARD_uc003okn.2_Silent_p.F351F|PPARD_uc011dtb.1_Silent_p.F312F|PPARD_uc011dtc.1_Silent_p.F253F	NM_006238	NP_006229	Q03181	PPARD_HUMAN	peroxisome proliferative activated receptor,	351	Ligand-binding.				apoptosis|axon ensheathment|cholesterol metabolic process|decidualization|embryo implantation|fatty acid beta-oxidation|fatty acid transport|generation of precursor metabolites and energy|glucose metabolic process|glucose transport|negative regulation of transcription from RNA polymerase II promoter|positive regulation of fat cell differentiation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	drug binding|linoleic acid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1					Icosapent(DB00159)|Sulindac(DB00605)|Treprostinil(DB00374)	TGGCCCTATTCATTGCGGCCA	0.567													17	12					0	0	0.00152264	0	0
CDKN1A	1026	broad.mit.edu	37	6	36651888	36651888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:36651888C>T	uc003omm.3	+	2	132	c.10C>T	c.(10-12)CCG>TCG	p.P4S	CDKN1A_uc011dtq.1_Missense_Mutation_p.P38S|CDKN1A_uc003oml.2_Missense_Mutation_p.P4S|CDKN1A_uc003omn.2_Missense_Mutation_p.P4S	NM_000389	NP_000380	P38936	CDN1A_HUMAN	cyclin-dependent kinase inhibitor 1A	4					cell cycle arrest|cellular response to extracellular stimulus|cellular response to ionizing radiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|induction of apoptosis by intracellular signals|negative regulation of cell growth|negative regulation of cell proliferation|positive regulation of fibroblast proliferation|positive regulation of reactive oxygen species metabolic process|Ras protein signal transduction|S phase of mitotic cell cycle|stress-induced premature senescence	cyclin-dependent protein kinase holoenzyme complex|cytosol|nucleoplasm|PCNA-p21 complex	cyclin-dependent protein kinase activating kinase activity|cyclin-dependent protein kinase inhibitor activity|metal ion binding			ovary(1)|breast(1)	2						CATGTCAGAACCGGCTGGGGA	0.632									Multiple_Endocrine_Neoplasia_type_1				6	12					0	0	0.00116845	0	0
DNAH8	1769	broad.mit.edu	37	6	38705606	38705606	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:38705606G>A	uc003ooe.1	+	5	923	c.323G>A	c.(322-324)GGA>GAA	p.G108E		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AGTATTGAGGGAACAGTGAAG	0.259													30	53					0	0	0.0024448	0	0
DNAH8	1769	broad.mit.edu	37	6	38759333	38759333	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:38759333C>T	uc003ooe.1	+	19	2733	c.2133C>T	c.(2131-2133)ATC>ATT	p.I711I		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CCTTGTAGATCAGTGACTTGT	0.348													16	16					0	0	0.00316338	0	0
DNAH8	1769	broad.mit.edu	37	6	38835890	38835890	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:38835890G>A	uc003ooe.1	+	46	6695	c.6095G>A	c.(6094-6096)GGA>GAA	p.G2032E		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AGGACTCTTGGATCTCAAAAA	0.363													20	52					0	0	0.000958276	0	0
KCNK5	8645	broad.mit.edu	37	6	39158950	39158950	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:39158950C>T	uc003oon.2	-	5	1580	c.1216G>A	c.(1216-1218)GAC>AAC	p.D406N		NM_003740	NP_003731	O95279	KCNK5_HUMAN	potassium channel, subfamily K, member 5	406					excretion	integral to plasma membrane	potassium channel activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						TCCTGGGCGTCCCATGGCTCG	0.627													16	41					0	0	0.00074312	0	0
KCNK16	83795	broad.mit.edu	37	6	39284208	39284208	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:39284208G>A	uc003ooq.2	-	5	686	c.672C>T	c.(670-672)CCC>CCT	p.P224P	KCNK17_uc003ooo.2_5'Flank|KCNK17_uc003oop.2_5'Flank|KCNK16_uc003oor.3_Intron|KCNK16_uc010jwy.2_Intron|KCNK16_uc011dtz.1_Silent_p.P224P	NM_032115	NP_115491	Q96T55	KCNKG_HUMAN	potassium channel, subfamily K, member 16	224						integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(1)	3						AATGCTTGCTGGGGTCTGTGC	0.617													4	13					0	0	0.00024832	0	0
LRFN2	57497	broad.mit.edu	37	6	40399472	40399472	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:40399472C>T	uc003oph.1	-	2	1846	c.1381G>A	c.(1381-1383)GAT>AAT	p.D461N		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	461	Fibronectin type-III.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					AGTACCTCATCGTCAGAGCAG	0.592													18	7					0	0	0.000958276	0	0
LRFN2	57497	broad.mit.edu	37	6	40399839	40399839	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:40399839G>A	uc003oph.1	-	2	1479	c.1014C>T	c.(1012-1014)GTC>GTT	p.V338V		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	338	Extracellular (Potential).|Ig-like.					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					CATTGTCATAGACAGCGGTCC	0.602													15	20					0	0	0.00244969	0	0
GUCA1B	2979	broad.mit.edu	37	6	42156425	42156425	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:42156425G>A	uc003orz.2	-	2	388	c.252C>T	c.(250-252)CTC>CTT	p.L84L		NM_002098	NP_002089	Q9UMX6	GUC1B_HUMAN	guanylate cyclase activator 1B (retina)	84	EF-hand 2.				body fluid secretion|cell-cell signaling|receptor guanylyl cyclase signaling pathway|visual perception	plasma membrane	calcium ion binding|calcium sensitive guanylate cyclase activator activity			skin(2)	2	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|Epithelial(12;0.00154)|STAD - Stomach adenocarcinoma(11;0.00177)			CCCTCAGCACGAGATTCAGAG	0.552													11	15					0	0	0.00136819	0	0
TRERF1	55809	broad.mit.edu	37	6	42237097	42237097	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:42237097C>T	uc003osd.2	-	5	795	c.232G>A	c.(232-234)GAT>AAT	p.D78N	TRERF1_uc011duq.1_Missense_Mutation_p.D78N|TRERF1_uc003osb.2_Intron|TRERF1_uc003osc.2_Intron|TRERF1_uc003ose.2_Missense_Mutation_p.D78N	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	78					cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CTCGAGGTATCCATTTGGCCA	0.582													40	37					0	0	0.00148497	0	0
ZNF318	24149	broad.mit.edu	37	6	43325230	43325230	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:43325230G>A	uc003oux.2	-	3	900	c.822C>T	c.(820-822)CCC>CCT	p.P274P	ZNF318_uc003ouw.2_RNA	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	274					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			CATCATAACGGGGTCTTTTGG	0.488													35	27					0	0	0.00428921	0	0
CAPN11	11131	broad.mit.edu	37	6	44137222	44137222	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:44137222G>A	uc003owt.1	+	3	331	c.293G>A	c.(292-294)GGC>GAC	p.G98D		NM_007058	NP_008989	Q9UMQ6	CAN11_HUMAN	calpain 11	98	Calpain catalytic.				proteolysis	acrosomal vesicle	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)|breast(1)	2	all_cancers(18;3.19e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			AAGGACCTGGGCCCCAACTCC	0.572													6	6					0	0	0.00116845	0	0
AARS2	57505	broad.mit.edu	37	6	44271982	44271982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:44271982G>A	uc010jza.1	-	14	1946	c.1943C>T	c.(1942-1944)CCT>CTT	p.P648L	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_020745	NP_065796	Q5JTZ9	SYAM_HUMAN	alanyl-tRNA synthetase 2, mitochondrial	648					alanyl-tRNA aminoacylation	mitochondrion	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			ovary(1)	1	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		L-Alanine(DB00160)	CTCTGTGCCAGGGCCCAGGGT	0.607											OREG0017473	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	17					0	0	0.00121646	0	0
TDRD6	221400	broad.mit.edu	37	6	46657589	46657589	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:46657589C>T	uc003oyj.2	+	1	1724	c.1724C>T	c.(1723-1725)TCG>TTG	p.S575L	TDRD6_uc010jze.2_Missense_Mutation_p.S569L	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	575	Tudor 3.				cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			CGAGGCAATTCGGAAAATGTG	0.443													29	59					0	0	0.001512	0	0
GPR116	221395	broad.mit.edu	37	6	46849839	46849839	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:46849839C>T	uc003oyo.3	-	7	907	c.618G>A	c.(616-618)CGG>CGA	p.R206R	GPR116_uc003oyp.3_Silent_p.R206R|GPR116_uc003oyq.3_Silent_p.R206R|GPR116_uc010jzi.1_5'Flank|GPR116_uc003oyr.2_Silent_p.R206R	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	206	SEA.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			CGTAACCCTTCCGGAACTGAA	0.368													30	44					0	0	0.00209593	0	0
CRISP3	10321	broad.mit.edu	37	6	49704164	49704164	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:49704164C>T	uc003ozs.2	-	3	144	c.129G>A	c.(127-129)GTG>GTA	p.V43V		NM_006061	NP_006052	P54108	CRIS3_HUMAN	cysteine-rich secretory protein 3 precursor	43					innate immune response	proteinaceous extracellular matrix|specific granule				skin(2)	2	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			TGTGCTTATTCACAATCTCCC	0.413													31	39					0	0	0.00327116	0	0
PGK2	5232	broad.mit.edu	37	6	49753833	49753833	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:49753833C>T	uc003ozu.2	-	1	1175	c.1068G>A	c.(1066-1068)ATG>ATA	p.M356I		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	356					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					CAATTTCATCCATGAGGGCTT	0.463													18	25					0	0	0.00121646	0	0
TFAP2D	83741	broad.mit.edu	37	6	50696616	50696616	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:50696616G>A	uc003paf.2	+	4	1158	c.646G>A	c.(646-648)GGC>AGC	p.G216S	TFAP2D_uc011dwt.1_RNA	NM_172238	NP_758438	Q7Z6R9	AP2D_HUMAN	transcription factor AP-2 beta-like 1	216							DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|breast(1)	7	Lung NSC(77;0.0334)					CTCTGTCCCTGGCCGTTTGTC	0.468													23	13					0	0	0.00395357	0	0
PKHD1	5314	broad.mit.edu	37	6	51503726	51503726	+	Silent	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:51503726A>C	uc003pah.1	-	64	11703	c.11427T>G	c.(11425-11427)GGT>GGG	p.G3809G		NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	3809	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					AGCTAACATAACCATCTTGAG	0.383													39	62					0	0	0.00222228	0	0
PKHD1	5314	broad.mit.edu	37	6	51889718	51889718	+	Silent	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:51889718C>A	uc003pah.1	-	32	5166	c.4890G>T	c.(4888-4890)GGG>GGT	p.G1630G	PKHD1_uc003pai.2_Silent_p.G1630G	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1630	Extracellular (Potential).|IPT/TIG 11.				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					CAGAGCCATTCCCTGTGGGAA	0.488													34	39					1.836e-18	5.03585e-18	0.00375469	1	0
PKHD1	5314	broad.mit.edu	37	6	51923238	51923238	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:51923238C>T	uc003pah.1	-	16	1671	c.1395G>A	c.(1393-1395)AGG>AGA	p.R465R	PKHD1_uc003pai.2_Silent_p.R465R	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	465	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					TCCTCATCCCCCTGCTTGGGG	0.562													30	30					0	0	0.00283554	0	0
PKHD1	5314	broad.mit.edu	37	6	51944766	51944766	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:51944766C>T	uc003pah.1	-	5	598	c.322G>A	c.(322-324)GAA>AAA	p.E108K	PKHD1_uc003pai.2_Missense_Mutation_p.E108K	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	108	Extracellular (Potential).|IPT/TIG 1; atypical.				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					AAGTATGCTTCCAGGAAGTAC	0.468													23	47					0	0	0.000720815	0	0
IL17A	3605	broad.mit.edu	37	6	52054084	52054084	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:52054084G>A	uc003pak.1	+	3	507	c.462G>A	c.(460-462)GTG>GTA	p.V154V		NM_002190	NP_002181	Q16552	IL17_HUMAN	interleukin 17A precursor	154					apoptosis|cell-cell signaling|fibroblast activation|immune response|inflammatory response|positive regulation of interleukin-23 production|positive regulation of osteoclast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein glycosylation	extracellular space	cytokine activity				0	Lung NSC(77;0.116)					TCCACCATGTGGCCTAAGAGC	0.597													11	12					0	0	0.000978159	0	0
TINAG	27283	broad.mit.edu	37	6	54186144	54186144	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:54186144C>T	uc003pcj.2	+	3	615	c.469C>T	c.(469-471)CGT>TGT	p.R157C	TINAG_uc003pci.2_3'UTR|TINAG_uc010jzt.2_Intron	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	157					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			ATGCCTTGTTCGTTCAGAATT	0.378													15	21					0	0	0.000958276	0	0
TINAG	27283	broad.mit.edu	37	6	54254608	54254608	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:54254608G>A	uc003pcj.2	+	11	1462	c.1316G>A	c.(1315-1317)GGA>GAA	p.G439E	TINAG_uc010jzt.2_RNA	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	439					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			AATTCCTGGGGAAAGTCATGG	0.393													23	25					0	0	0.001512	0	0
GFRAL	389400	broad.mit.edu	37	6	55264058	55264058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:55264058C>T	uc003pcm.1	+	7	1119	c.1033C>T	c.(1033-1035)CAT>TAT	p.H345Y		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	345	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			AACTGGATTTCATTCCCCCTT	0.284													9	9					0	0	0.000274275	0	0
KHDRBS2	202559	broad.mit.edu	37	6	62688069	62688069	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:62688069C>T	uc003peg.2	-	4	632	c.385G>A	c.(385-387)GAT>AAT	p.D129N		NM_152688	NP_689901	Q5VWX1	KHDR2_HUMAN	KH domain-containing, RNA-binding, signal	129	KH.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	SH3 domain binding			skin(7)|ovary(3)|liver(1)	11				BRCA - Breast invasive adenocarcinoma(397;0.149)		TGAAGCTCATCACTCAAGTGG	0.373													9	14					0	0	0.000442599	0	0
MCART3P	442229	broad.mit.edu	37	6	66498502	66498502	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:66498502C>T	uc011dxw.1	+	1		c.731C>T				NR_026540				Homo sapiens mitochondrial carrier triple repeat 3 pseudogene, mRNA (cDNA clone IMAGE:4821649).												0						CATCAAAACCCGGGATGCAAT	0.463													18	24					0	0	0.00074312	0	0
BAI3	577	broad.mit.edu	37	6	69348981	69348981	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:69348981C>T	uc003pev.3	+	3	862	c.414C>T	c.(412-414)TTC>TTT	p.F138F	BAI3_uc010kak.2_Silent_p.F138F	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	138	CUB.|Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				CAACTAATTTCCCAGGATTAC	0.333													10	23					0	0	0.000978159	0	0
COL19A1	1310	broad.mit.edu	37	6	70850851	70850851	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:70850851G>A	uc003pfc.1	+	20	1569	c.1452G>A	c.(1450-1452)GAG>GAA	p.E484E	COL19A1_uc010kam.1_Silent_p.E380E	NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	484	Triple-helical region 3 (COL3).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						CTTAGGGAGAGCCTTTTACAA	0.373													24	19					0	0	0.00332997	0	0
COL19A1	1310	broad.mit.edu	37	6	70890205	70890205	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:70890205G>A	uc003pfc.1	+	43	2786	c.2669G>A	c.(2668-2670)GGA>GAA	p.G890E		NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	890	Triple-helical region 5 (COL5).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						CCTTGCCAGGGAAAACCTGGT	0.488													19	23					0	0	0.00121646	0	0
RIMS1	22999	broad.mit.edu	37	6	72957726	72957726	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:72957726T>C	uc003pga.2	+	12	2214	c.2137T>C	c.(2137-2139)TCC>CCC	p.S713P	RIMS1_uc011dyb.1_Missense_Mutation_p.S339P|RIMS1_uc003pgc.2_Missense_Mutation_p.S339P|RIMS1_uc010kaq.2_Missense_Mutation_p.S187P|RIMS1_uc011dyc.1_Missense_Mutation_p.S187P|RIMS1_uc010kar.2_Missense_Mutation_p.S106P|RIMS1_uc011dyd.1_Missense_Mutation_p.S172P|RIMS1_uc003pgf.2_5'Flank|RIMS1_uc003pgg.2_5'Flank|RIMS1_uc003pgi.2_5'Flank|RIMS1_uc003pgh.2_5'Flank|RIMS1_uc003pgd.2_5'Flank|RIMS1_uc003pge.2_5'Flank|RIMS1_uc003pgb.3_Missense_Mutation_p.S339P|RIMS1_uc010kas.1_Missense_Mutation_p.S172P	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	713					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				AGGTTCAAGTTCCTTTGAATC	0.328													15	21					0	0	0.00400662	0	0
C6orf221	154288	broad.mit.edu	37	6	74073307	74073307	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:74073307C>T	uc003pgt.3	+	3	431	c.378C>T	c.(376-378)GTC>GTT	p.V126V		NM_001017361	NP_001017361	Q587J8	ECAT1_HUMAN	hypothetical protein LOC154288	126										skin(2)	2						CCCAGGATGTCGCCACTCAGA	0.617													17	16					0	0	0.00074312	0	0
COL12A1	1303	broad.mit.edu	37	6	75828862	75828862	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:75828862C>T	uc003phs.2	-	46	7417	c.7251G>A	c.(7249-7251)TGG>TGA	p.W2417*	COL12A1_uc003pht.2_Nonsense_Mutation_p.W1253*	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	2417	VWFA 4.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						TGCCGCTCTCCCAAGTCAAGA	0.498													8	15					0	0	0.00307968	0	0
NT5E	4907	broad.mit.edu	37	6	86181079	86181079	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:86181079C>T	uc003pko.3	+	3	1243	c.687C>T	c.(685-687)ATC>ATT	p.I229I	NT5E_uc003pkn.2_Silent_p.I229I|NT5E_uc010kbr.2_Silent_p.I229I	NM_002526	NP_002517	P21589	5NTD_HUMAN	5' nucleotidase, ecto precursor	229					DNA metabolic process|purine base metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	anchored to membrane|cytoplasm|membrane fraction|plasma membrane	5'-nucleotidase activity|nucleotide binding			ovary(3)|central_nervous_system(1)	4		all_cancers(76;0.000215)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0427)		BRCA - Breast invasive adenocarcinoma(108;0.0417)	Pentoxifylline(DB00806)	ATAAACTCATCGCTCAGAAAG	0.408													15	39					0	0	0.00121646	0	0
ZNF292	23036	broad.mit.edu	37	6	87967944	87967944	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:87967944G>A	uc003plm.3	+	8	4638	c.4597G>A	c.(4597-4599)GTA>ATA	p.V1533I		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	1533					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		AAATCCAACTGTACCACCCCT	0.463													11	5					0	0	0.000978159	0	0
BACH2	60468	broad.mit.edu	37	6	90660443	90660443	+	Missense_Mutation	SNP	G	A	A	rs144153232		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:90660443G>A	uc011eab.1	-	7	2191	c.1382C>T	c.(1381-1383)CCG>CTG	p.P461L	BACH2_uc003pnw.2_Missense_Mutation_p.P461L|BACH2_uc010kch.2_Missense_Mutation_p.P461L	NM_021813	NP_068585	Q9BYV9	BACH2_HUMAN	BTB and CNC homology 1, basic leucine zipper	461						nucleus	protein dimerization activity|sequence-specific DNA binding			ovary(3)|pancreas(1)|lung(1)|skin(1)	6		all_cancers(76;7.37e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.0063)		BRCA - Breast invasive adenocarcinoma(108;0.0799)		CTTTGGCACCGGCTCAGAGAG	0.617													24	18					0	0	0.000878237	0	0
EPHA7	2045	broad.mit.edu	37	6	93967895	93967895	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:93967895C>T	uc003poe.2	-	11	2273	c.2032G>A	c.(2032-2034)GAC>AAC	p.D678N	EPHA7_uc003pof.2_Missense_Mutation_p.D673N|EPHA7_uc011eac.1_Missense_Mutation_p.D674N	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	678	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		CACAAAAAGTCTCTCCTTTGT	0.428													9	18					0	0	0.000442599	0	0
EPHA7	2045	broad.mit.edu	37	6	94120784	94120784	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:94120784C>T	uc003poe.2	-	3	508	c.267G>A	c.(265-267)TGG>TGA	p.W89*	EPHA7_uc003pof.2_Nonsense_Mutation_p.W89*|EPHA7_uc011eac.1_Nonsense_Mutation_p.W89*|EPHA7_uc003pog.3_Nonsense_Mutation_p.W89*	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	89	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		CTTTGGAAATCCAGTTAGTCC	0.438													17	24					0	0	0.00400662	0	0
FHL5	9457	broad.mit.edu	37	6	97053872	97053872	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:97053872C>T	uc003pos.1	+	5	834	c.429C>T	c.(427-429)ATC>ATT	p.I143I	FHL5_uc003pot.1_Silent_p.I143I	NM_020482	NP_065228	Q5TD97	FHL5_HUMAN	activator of cAMP-responsive element modulator	143	LIM zinc-binding 2.					nucleus	zinc ion binding			ovary(2)	2		all_cancers(76;1.57e-07)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00266)|Colorectal(196;0.0341)|Lung NSC(302;0.204)		BRCA - Breast invasive adenocarcinoma(108;0.0948)		AGCCTTTGATCTCCAAAGAGA	0.413													15	18					0	0	0.00316338	0	0
PRDM13	59336	broad.mit.edu	37	6	100056687	100056687	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:100056687G>A	uc003pqg.1	+	2	476	c.215G>A	c.(214-216)CGG>CAG	p.R72Q		NM_021620	NP_067633	Q9H4Q3	PRD13_HUMAN	PR domain containing 13	72	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(76;1.64e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0128)|Colorectal(196;0.069)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0598)		GGGTTAATCCGGGCAGCCAGA	0.622													9	13					0	0	0.000442599	0	0
LIN28B	389421	broad.mit.edu	37	6	105526471	105526471	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:105526471C>T	uc003pqv.1	+	4	769	c.566C>T	c.(565-567)TCA>TTA	p.S189L	LIN28B_uc010kda.1_3'UTR	NM_001004317	NP_001004317	Q6ZN17	LN28B_HUMAN	lin-28 homolog B	189					miRNA catabolic process|pre-miRNA processing|regulation of transcription, DNA-dependent|RNA 3'-end processing	cytoplasm|nucleus	DNA binding|protein binding|RNA binding|zinc ion binding				0		all_cancers(87;0.00346)|Acute lymphoblastic leukemia(125;2.26e-08)|all_hematologic(75;2.79e-06)|all_epithelial(87;0.204)				CCATGCACTTCAACTCTCCCT	0.557													16	22					0	0	0.00400662	0	0
PREP	5550	broad.mit.edu	37	6	105736770	105736770	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:105736770C>T	uc003prc.2	-	11	1521	c.1318_splice	c.e11-1	p.I440_splice		NM_002726	NP_002717	P48147	PPCE_HUMAN	prolyl endopeptidase						proteolysis		serine-type endopeptidase activity			ovary(3)	3		all_cancers(87;0.000128)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0344)|Lung NSC(302;0.191)|Colorectal(196;0.202)			Oxytocin(DB00107)	GGTAGAAAATCTAGAATATAA	0.338													18	20					0	0	0.00152264	0	0
PREP	5550	broad.mit.edu	37	6	105771585	105771585	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:105771585C>T	uc003prc.2	-	10	1475	c.1272G>A	c.(1270-1272)GAG>GAA	p.E424E		NM_002726	NP_002717	P48147	PPCE_HUMAN	prolyl endopeptidase	424					proteolysis		serine-type endopeptidase activity			ovary(3)	3		all_cancers(87;0.000128)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0344)|Lung NSC(302;0.191)|Colorectal(196;0.202)			Oxytocin(DB00107)	TTACGGTCACCTCTCGGAAAA	0.418													17	19					0	0	0.00229938	0	0
BEND3	57673	broad.mit.edu	37	6	107390646	107390646	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:107390646G>A	uc003prs.2	-	5	2399	c.1749C>T	c.(1747-1749)CCC>CCT	p.P583P		NM_001080450	NP_001073919	Q5T5X7	BEND3_HUMAN	BEN domain containing 3	583	BEN 3.									ovary(3)	3						TGAAGAGCTCGGGGAACAGGT	0.632													25	32					0	0	0.00106085	0	0
BEND3	57673	broad.mit.edu	37	6	107391958	107391958	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:107391958G>A	uc003prs.2	-	5	1087	c.437C>T	c.(436-438)TCG>TTG	p.S146L		NM_001080450	NP_001073919	Q5T5X7	BEND3_HUMAN	BEN domain containing 3	146										ovary(3)	3						CAGGTCCCCCGAGGGAGGATT	0.572													37	52					0	0	0.00195071	0	0
FOXO3	2309	broad.mit.edu	37	6	108984964	108984964	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:108984964C>T	uc003psk.2	+	3	1244	c.928C>T	c.(928-930)CGT>TGT	p.R310C	FOXO3_uc003psn.2_Intron|FOXO3_uc003psm.2_Missense_Mutation_p.R310C|FOXO3_uc011ean.1_Missense_Mutation_p.R90C|FOXO3_uc010kdj.1_Missense_Mutation_p.R90C	NM_201559	NP_963853	O43524	FOXO3_HUMAN	forkhead box O3A	310				PGSPTSRSSDELDAWTDFRSRTNSNASTVSGRLSPIMAS -> AWQPHVNAAVMSWMRGRTSVHAPILTPAQSVAACRPSW QV (in Ref. 5; CAA04860).	antral ovarian follicle growth|apoptosis|embryo development|glucose homeostasis|induction of apoptosis|initiation of primordial ovarian follicle growth|insulin receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|oocyte maturation|ovulation from ovarian follicle|pattern specification process|phosphatidylinositol-mediated signaling|positive regulation of erythrocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|tissue development	cytosol|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding			central_nervous_system(4)|lung(2)	6		all_cancers(87;1.78e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;3.88e-05)|Colorectal(196;0.0294)|all_lung(197;0.0487)|Lung SC(18;0.152)		Epithelial(106;0.000759)|all cancers(137;0.00121)|BRCA - Breast invasive adenocarcinoma(108;0.00163)|OV - Ovarian serous cystadenocarcinoma(136;0.00718)		GACGGACTTCCGTTCACGCAC	0.607													7	8					0	0	0.00198382	0	0
SLC22A16	85413	broad.mit.edu	37	6	110759941	110759941	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:110759941G>A	uc003puf.2	-	5	1360	c.1293C>T	c.(1291-1293)GTC>GTT	p.V431V	SLC22A16_uc003pue.2_Silent_p.V412V	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	431	Helical; (Potential).				acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		TCACCATAACGACACCACAGG	0.458													27	27					0	0	0.001512	0	0
HS3ST5	222537	broad.mit.edu	37	6	114378693	114378693	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:114378693G>A	uc003pwg.3	-	2	801	c.769C>T	c.(769-771)CGC>TGC	p.R257C	uc003pwf.2_Intron|HS3ST5_uc003pwh.3_Missense_Mutation_p.R257C	NM_153612	NP_705840	Q8IZT8	HS3S5_HUMAN	heparan sulfate (glucosamine)	257	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification|negative regulation of coagulation|protein sulfation|regulation of virion penetration into host cell	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity|protein binding			ovary(1)|pancreas(1)	2		all_cancers(87;0.0587)|Colorectal(196;0.0676)|all_epithelial(87;0.154)		OV - Ovarian serous cystadenocarcinoma(136;0.00937)|all cancers(137;0.0117)|Epithelial(106;0.0274)|GBM - Glioblastoma multiforme(226;0.143)		GTGATGAGGCGATCTCCATCG	0.423													23	28					0	0	0.00278032	0	0
DSE	29940	broad.mit.edu	37	6	116757438	116757438	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:116757438C>T	uc003pws.2	+	6	2001	c.1807C>T	c.(1807-1809)CAT>TAT	p.H603Y	DSE_uc011ebg.1_Missense_Mutation_p.H622Y|DSE_uc003pwt.2_Missense_Mutation_p.H603Y|DSE_uc003pwu.2_Missense_Mutation_p.H270Y	NM_001080976	NP_001074445	Q9UL01	DSE_HUMAN	dermatan sulfate epimerase precursor	603					dermatan sulfate biosynthetic process	endoplasmic reticulum|Golgi apparatus|integral to membrane	chondroitin-glucuronate 5-epimerase activity			ovary(1)	1		all_cancers(87;0.00019)|all_epithelial(87;0.000416)|Ovarian(999;0.133)|Colorectal(196;0.234)		Epithelial(106;0.00915)|OV - Ovarian serous cystadenocarcinoma(136;0.0149)|GBM - Glioblastoma multiforme(226;0.0189)|all cancers(137;0.0262)		AGATGGTGTCCATGGGGCTTT	0.488													16	14					0	0	0.00400662	0	0
DSE	29940	broad.mit.edu	37	6	116757959	116757959	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:116757959C>T	uc003pws.2	+	6	2522	c.2328C>T	c.(2326-2328)CGC>CGT	p.R776R	DSE_uc011ebg.1_Silent_p.R795R|DSE_uc003pwt.2_Silent_p.R776R|DSE_uc003pwu.2_Silent_p.R443R	NM_001080976	NP_001074445	Q9UL01	DSE_HUMAN	dermatan sulfate epimerase precursor	776					dermatan sulfate biosynthetic process	endoplasmic reticulum|Golgi apparatus|integral to membrane	chondroitin-glucuronate 5-epimerase activity			ovary(1)	1		all_cancers(87;0.00019)|all_epithelial(87;0.000416)|Ovarian(999;0.133)|Colorectal(196;0.234)		Epithelial(106;0.00915)|OV - Ovarian serous cystadenocarcinoma(136;0.0149)|GBM - Glioblastoma multiforme(226;0.0189)|all cancers(137;0.0262)		CTGCTGAACGCCTGCTGAGAT	0.463													5	23					0	0	0.000602214	0	0
GPRC6A	222545	broad.mit.edu	37	6	117150200	117150200	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:117150200C>T	uc003pxj.1	-	1	1	c.-21_splice	c.e1-1		GPRC6A_uc003pxk.1_Splice_Site|GPRC6A_uc003pxl.1_Splice_Site	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,						response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		TTGCTCAGTTCATGTGAGTTC	0.403													3	1					0	0	6.4e-05	0	0
ROS1	6098	broad.mit.edu	37	6	117718260	117718260	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:117718260C>T	uc003pxp.1	-	7	796	c.597G>A	c.(595-597)TTG>TTA	p.L199L	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	199	Fibronectin type-III 2.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		TATTCCTAATCAAAGGTGCAG	0.403			T	GOPC|ROS1	glioblastoma|NSCLC								17	25					0	0	0.000958276	0	0
ROS1	6098	broad.mit.edu	37	6	117725504	117725504	+	Missense_Mutation	SNP	C	T	T	rs34245787		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:117725504C>T	uc003pxp.1	-	5	576	c.377G>A	c.(376-378)GGA>GAA	p.G126E	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	126	Fibronectin type-III 1.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		GTATTTTACTCCAGAGAAGTT	0.428			T	GOPC|ROS1	glioblastoma|NSCLC								25	20					0	0	0.00278032	0	0
FAM184A	79632	broad.mit.edu	37	6	119345183	119345183	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:119345183G>A	uc003pyj.2	-	2	1303	c.955C>T	c.(955-957)CTT>TTT	p.L319F	FAM184A_uc003pyk.3_Missense_Mutation_p.L199F|FAM184A_uc003pyl.3_Missense_Mutation_p.L199F	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	319	Potential.									ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						TTGTCAAGAAGACTTCCAGCT	0.348													52	70					0	0	0.00361006	0	0
GJA1	2697	broad.mit.edu	37	6	121768817	121768817	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:121768817C>T	uc003pyr.2	+	2	1074	c.824C>T	c.(823-825)ACC>ATC	p.T275I	GJA1_uc011ebo.1_Missense_Mutation_p.T176I|GJA1_uc011ebp.1_Missense_Mutation_p.T63I	NM_000165	NP_000156	P17302	CXA1_HUMAN	connexin 43	275	Cytoplasmic (Potential).				cell-cell signaling|cellular membrane organization|gap junction assembly|heart development|muscle contraction|positive regulation of I-kappaB kinase/NF-kappaB cascade	connexon complex|Golgi-associated vesicle membrane|integral to plasma membrane|membrane raft	ion transmembrane transporter activity|signal transducer activity			ovary(2)	2				GBM - Glioblastoma multiforme(226;0.00252)	Carvedilol(DB01136)	TCCTCACCAACCGCTCCCCTC	0.517													14	33					0	0	0.00185496	0	0
C6orf174	387104	broad.mit.edu	37	6	127796668	127796668	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:127796668C>T	uc003qbd.2	-	6	3368	c.2503G>A	c.(2503-2505)GAC>AAC	p.D835N	C6orf174_uc003qbc.2_5'UTR	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	835	Potential.					integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		GTGCTCGTGTCGGCGATGAGC	0.672													38	52					0	0	0.00222228	0	0
C6orf174	387104	broad.mit.edu	37	6	127837547	127837547	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:127837547C>T	uc003qbd.2	-	2	1078	c.213G>A	c.(211-213)CGG>CGA	p.R71R		NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	71						integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		gctgctgctgcCGAACAGAAT	0.572													18	14					0	0	0.00152264	0	0
THEMIS	387357	broad.mit.edu	37	6	128134490	128134491	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:128134490_128134491TC>AT	uc003qbi.2	-	5	1614_1615	c.1295_1296GA>AT	c.(1294-1296)GGA>GAT	p.G432D	THEMIS_uc010kfa.2_Missense_Mutation_p.G335D|THEMIS_uc011ebt.1_Missense_Mutation_p.G432D|THEMIS_uc010kfb.2_Missense_Mutation_p.G397D	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	432	CABIT 2.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						CTACAAAACCTCCTTCCATGTA	0.446													18	23					0	0	6.4e-05	0	0
THEMIS	387357	broad.mit.edu	37	6	128134744	128134744	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:128134744C>T	uc003qbi.2	-	5	1361	c.1042G>A	c.(1042-1044)GAG>AAG	p.E348K	THEMIS_uc010kfa.2_Missense_Mutation_p.E251K|THEMIS_uc011ebt.1_Missense_Mutation_p.E348K|THEMIS_uc010kfb.2_Missense_Mutation_p.E313K	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	348	CABIT 2.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						GTTGGGAACTCCCTCGGTCGC	0.478													17	22					0	0	0.00074312	0	0
PTPRK	5796	broad.mit.edu	37	6	128298072	128298072	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:128298072G>A	uc003qbk.2	-	26	4203	c.3836C>T	c.(3835-3837)TCC>TTC	p.S1279F	PTPRK_uc003qbj.2_Missense_Mutation_p.S1280F|PTPRK_uc010kfc.2_Missense_Mutation_p.S1286F|PTPRK_uc011ebu.1_Missense_Mutation_p.S1302F	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	1279	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		ATTAACCTGGGACAAGTCGAC	0.358													7	13					0	0	0.000274275	0	0
L3MBTL3	84456	broad.mit.edu	37	6	130381225	130381225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:130381225G>A	uc003qbt.2	+	10	974	c.804G>A	c.(802-804)ATG>ATA	p.M268I	L3MBTL3_uc003qbu.2_Missense_Mutation_p.M243I	NM_032438	NP_115814	Q96JM7	LMBL3_HUMAN	l(3)mbt-like 3 isoform a	268	MBT 1.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(5)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.0266)|OV - Ovarian serous cystadenocarcinoma(155;0.154)		AAGTTGGCATGAAATTAGAAG	0.393													19	14					0	0	0.00278032	0	0
ENPP3	5169	broad.mit.edu	37	6	131997883	131997883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:131997883C>T	uc003qcu.3	+	11	1227	c.880C>T	c.(880-882)CCA>TCA	p.P294S	ENPP3_uc010kfn.1_RNA|ENPP3_uc010kfo.1_RNA|ENPP3_uc010kfp.1_RNA|ENPP3_uc010kfq.2_RNA|ENPP3_uc003qcv.2_Missense_Mutation_p.P294S	NM_005021	NP_005012	O14638	ENPP3_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	294	Extracellular (Potential).|Phosphodiesterase.				immune response|nucleoside triphosphate catabolic process|phosphate metabolic process	extracellular region|integral to plasma membrane|perinuclear region of cytoplasm	metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity			ovary(3)|skin(1)	4	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0252)|OV - Ovarian serous cystadenocarcinoma(155;0.0511)		CAGAAGTGTCCCATTTGAAGA	0.348													7	18					0	0	0.000274275	0	0
TAAR1	134864	broad.mit.edu	37	6	132966171	132966171	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:132966171G>A	uc003qdm.1	-	1	972	c.972C>T	c.(970-972)TTC>TTT	p.F324F		NM_138327	NP_612200	Q96RJ0	TAAR1_HUMAN	trace amine associated receptor 1	324	Cytoplasmic (Potential).					plasma membrane					0	Breast(56;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00616)|GBM - Glioblastoma multiforme(226;0.0154)	Amphetamine(DB00182)	AATCTTTTTGGAAAATTTTAC	0.299													6	9					0	0	0.00198382	0	0
TAAR1	134864	broad.mit.edu	37	6	132966382	132966382	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:132966382C>T	uc003qdm.1	-	1	761	c.761G>A	c.(760-762)GGG>GAG	p.G254E		NM_138327	NP_612200	Q96RJ0	TAAR1_HUMAN	trace amine associated receptor 1	254	Helical; Name=6; (Potential).					plasma membrane					0	Breast(56;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00616)|GBM - Glioblastoma multiforme(226;0.0154)	Amphetamine(DB00182)	CATCACAATCCCCAATGTCTT	0.378													12	12					0	0	0.00136819	0	0
TCF21	6943	broad.mit.edu	37	6	134210763	134210763	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:134210763G>A	uc003qei.3	+	1	504	c.228G>A	c.(226-228)GGG>GGA	p.G76G	uc003qeg.1_5'Flank|TCF21_uc003qej.2_Silent_p.G76G	NM_003206	NP_003197	O43680	TCF21_HUMAN	transcription factor 21	76					branching involved in ureteric bud morphogenesis|mesoderm development|negative regulation of androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent	nucleus	androgen receptor binding|E-box binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity				0	Colorectal(23;0.221)|Breast(56;0.247)			GBM - Glioblastoma multiforme(68;0.00518)|OV - Ovarian serous cystadenocarcinoma(155;0.00783)		GCCAGGAGGGGAAGCAGGTCC	0.692													10	18					0	0	0.000978159	0	0
PDE7B	27115	broad.mit.edu	37	6	136508200	136508200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:136508200G>A	uc003qgp.2	+	12	1375	c.1072G>A	c.(1072-1074)GAA>AAA	p.E358K	uc003qgq.1_Intron|PDE7B_uc003qgr.2_Missense_Mutation_p.E410K	NM_018945	NP_061818	Q9NP56	PDE7B_HUMAN	phosphodiesterase 7B	358	Catalytic (By similarity).				signal transduction|synaptic transmission	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(1)	1	Colorectal(23;0.24)			OV - Ovarian serous cystadenocarcinoma(155;0.0136)|GBM - Glioblastoma multiforme(68;0.0147)	Dyphylline(DB00651)|Ketotifen(DB00920)	ATTTGAACTGGAAATCAGTCC	0.289													23	37					0	0	0.00395357	0	0
BCLAF1	9774	broad.mit.edu	37	6	136599532	136599532	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:136599532C>T	uc003qgx.1	-	4	740	c.487G>A	c.(487-489)GAA>AAA	p.E163K	BCLAF1_uc003qgw.1_Missense_Mutation_p.E163K|BCLAF1_uc003qgy.1_Missense_Mutation_p.E161K|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.E161K	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	163					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		GTTTGTTTTTCCTGAGACCCT	0.433													6	45					0	0	0.00116845	0	0
MAP7	9053	broad.mit.edu	37	6	136698940	136698940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:136698940G>A	uc003qgz.2	-	7	950	c.704C>T	c.(703-705)TCG>TTG	p.S235L	MAP7_uc011edf.1_Missense_Mutation_p.S220L|MAP7_uc011edg.1_Missense_Mutation_p.S257L|MAP7_uc010kgu.2_Missense_Mutation_p.S257L|MAP7_uc011edh.1_Missense_Mutation_p.S220L|MAP7_uc010kgv.2_Missense_Mutation_p.S257L|MAP7_uc010kgs.2_Missense_Mutation_p.S89L|MAP7_uc011edi.1_Missense_Mutation_p.S89L|MAP7_uc010kgq.1_Missense_Mutation_p.S141L|MAP7_uc003qha.1_Missense_Mutation_p.S198L|MAP7_uc010kgr.2_Missense_Mutation_p.S89L|MAP7_uc010kgt.2_Missense_Mutation_p.S257L	NM_003980	NP_003971	Q14244	MAP7_HUMAN	microtubule-associated protein 7	235					establishment or maintenance of cell polarity|microtubule cytoskeleton organization|protein localization in plasma membrane|response to osmotic stress	basolateral plasma membrane|microtubule|microtubule associated complex|nucleus|perinuclear region of cytoplasm	receptor binding|structural molecule activity				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00199)|OV - Ovarian serous cystadenocarcinoma(155;0.00643)		GGCCAGGAACGAATGTGTGGG	0.527													26	46					0	0	0.00127121	0	0
KIAA1244	57221	broad.mit.edu	37	6	138619790	138619790	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:138619790C>T	uc003qhu.2	+	22	3696	c.3696C>T	c.(3694-3696)TTC>TTT	p.F1232F		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	1232					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		CTGTTTCCTTCATCCATGACA	0.478													7	12					0	0	0.00307968	0	0
GRM1	2911	broad.mit.edu	37	6	146350696	146350696	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:146350696G>A	uc010khw.1	+	2	513	c.43G>A	c.(43-45)GAG>AAG	p.E15K	GRM1_uc010khu.1_Missense_Mutation_p.E15K|GRM1_uc010khv.1_Missense_Mutation_p.E15K|GRM1_uc003qll.2_Missense_Mutation_p.E15K|GRM1_uc011edz.1_Missense_Mutation_p.E15K|GRM1_uc011eea.1_Missense_Mutation_p.E15K	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	15					synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	GATCTTTTTGGAGGTGTCCCT	0.602													44	72					0	0	0.00361006	0	0
LATS1	9113	broad.mit.edu	37	6	150004522	150004522	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:150004522G>A	uc003qmu.1	-	4	2251	c.1703C>T	c.(1702-1704)CCA>CTA	p.P568L	LATS1_uc010kif.1_Missense_Mutation_p.P463L|LATS1_uc003qmv.1_Missense_Mutation_p.P568L|LATS1_uc003qmw.2_Missense_Mutation_p.P568L|LATS1_uc010kig.1_Missense_Mutation_p.P463L	NM_004690	NP_004681	O95835	LATS1_HUMAN	LATS homolog 1	568	Interaction with YAP1.				cell division|cytoplasmic sequestering of protein|G2/M transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|positive regulation of peptidyl-serine phosphorylation|regulation of actin filament polymerization|sister chromatid segregation	microtubule organizing center|spindle pole	ATP binding|magnesium ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;6.93e-13)|GBM - Glioblastoma multiforme(68;0.116)		AGGAACAGATGGGTTTTGGTG	0.468													48	58					0	0	0.00361006	0	0
IYD	389434	broad.mit.edu	37	6	150713566	150713566	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:150713566C>T	uc003qnu.1	+	3	596	c.456C>T	c.(454-456)ATC>ATT	p.I152I	IYD_uc003qnv.1_Silent_p.I152I|IYD_uc003qnw.1_RNA|IYD_uc003qnx.1_Silent_p.I152I|IYD_uc010kik.1_Silent_p.I70I	NM_203395	NP_981932	Q6PHW0	IYD1_HUMAN	iodotyrosine dehalogenase 1 isoform 2	152	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process	integral to membrane|plasma membrane				ovary(2)	2		Ovarian(120;0.028)	BRCA - Breast invasive adenocarcinoma(37;0.215)	OV - Ovarian serous cystadenocarcinoma(155;4.16e-12)		TTCGAAAGATCATTGAGGAGG	0.522													28	32					0	0	0.000720815	0	0
PLEKHG1	57480	broad.mit.edu	37	6	151152882	151152882	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:151152882G>A	uc003qny.1	+	16	2947	c.2635G>A	c.(2635-2637)GAG>AAG	p.E879K	PLEKHG1_uc011eel.1_Missense_Mutation_p.E919K|PLEKHG1_uc011eem.1_Missense_Mutation_p.E938K|PLEKHG1_uc003qnz.2_Missense_Mutation_p.E879K	NM_001029884	NP_001025055	Q9ULL1	PKHG1_HUMAN	pleckstrin homology domain containing, family G	879					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(37;0.0923)	OV - Ovarian serous cystadenocarcinoma(155;6.69e-13)		GAGCACCCCTGAGCTGAGCCG	0.627													15	23					0	0	0.00244969	0	0
C6orf97	80129	broad.mit.edu	37	6	151869468	151869468	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:151869468C>T	uc003qol.2	+	5	707	c.618C>T	c.(616-618)TTC>TTT	p.F206F		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	206	Potential.										0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		AAAATGAATTCGTGAAAGGAC	0.368													8	22					0	0	0.000274275	0	0
ESR1	2099	broad.mit.edu	37	6	152382133	152382133	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:152382133G>A	uc003qom.3	+	8	1613	c.1243G>A	c.(1243-1245)GGA>AGA	p.G415R	ESR1_uc010kin.2_Missense_Mutation_p.G415R|ESR1_uc010kio.2_Missense_Mutation_p.G417R|ESR1_uc010kip.2_Missense_Mutation_p.G414R|ESR1_uc003qon.3_Missense_Mutation_p.G415R|ESR1_uc003qoo.3_Missense_Mutation_p.G415R|ESR1_uc010kiq.2_Missense_Mutation_p.G13R|ESR1_uc010kir.2_Missense_Mutation_p.G154R|ESR1_uc011eet.1_Intron|ESR1_uc011eeu.1_RNA|ESR1_uc011eev.1_Intron|ESR1_uc011eew.1_Intron|ESR1_uc010kis.2_Missense_Mutation_p.G84R|ESR1_uc011eex.1_Intron|ESR1_uc010kit.1_Silent_p.R105R|ESR1_uc011eey.1_Missense_Mutation_p.G152R	NM_001122742	NP_001116214	P03372	ESR1_HUMAN	estrogen receptor alpha isoform 4	415	Steroid-binding.|Interaction with AKAP13.				positive regulation of retinoic acid receptor signaling pathway|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to estradiol stimulus	chromatin remodeling complex|cytoplasm|nucleoplasm	beta-catenin binding|enzyme binding|estrogen receptor activity|estrogen response element binding|nitric-oxide synthase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|zinc ion binding			central_nervous_system(2)|ovary(1)|lung(1)|breast(1)	5		Ovarian(120;0.0448)	BRCA - Breast invasive adenocarcinoma(37;0.0841)	OV - Ovarian serous cystadenocarcinoma(155;4.55e-10)	Chlorotrianisene(DB00269)|Clomifene(DB00882)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Desogestrel(DB00304)|Dienestrol(DB00890)|Diethylstilbestrol(DB00255)|Dromostanolone(DB00858)|Drospirenone(DB01395)|Estradiol(DB00783)|Estramustine(DB01196)|Estriol(DB04573)|Estrone(DB00655)|Ethinyl Estradiol(DB00977)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Fluoxymesterone(DB01185)|Fulvestrant(DB00947)|Letrozole(DB01006)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Melatonin(DB01065)|Mestranol(DB01357)|Naloxone(DB01183)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)|Quinestrol(DB04575)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Toremifene(DB00539)	TAGGAACCAGGGAAAATGTGT	0.378													9	3					0	0	0.000274275	0	0
SYNE1	23345	broad.mit.edu	37	6	152553250	152553250	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:152553250C>T	uc010kiw.2	-	113	21464	c.20862_splice	c.e113+1	p.K6954_splice	SYNE1_uc010kiv.2_Splice_Site_p.K1478_splice|SYNE1_uc003qos.3_Splice_Site_p.K1478_splice|SYNE1_uc003qot.3_Splice_Site_p.K6883_splice|SYNE1_uc003qou.3_Splice_Site_p.K6954_splice	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1						cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ATTTTAATTACCTTATATTTC	0.249										HNSCC(10;0.0054)			8	25					0	0	0.000673444	0	0
SYNE1	23345	broad.mit.edu	37	6	152655162	152655162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:152655162C>T	uc010kiw.2	-	77	13377	c.12775G>A	c.(12775-12777)GAA>AAA	p.E4259K	SYNE1_uc003qot.3_Missense_Mutation_p.E4188K|SYNE1_uc003qou.3_Missense_Mutation_p.E4259K|SYNE1_uc010kiz.2_Missense_Mutation_p.E14K	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	4259	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TTATCCCATTCTGTAGTAAAT	0.358										HNSCC(10;0.0054)			49	67					0	0	0.00361006	0	0
IPCEF1	26034	broad.mit.edu	37	6	154567812	154567812	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:154567812C>T	uc003qpx.2	-	5	312	c.156G>A	c.(154-156)AAG>AAA	p.K52K	OPRM1_uc003qpt.1_Intron|IPCEF1_uc003qpw.2_Silent_p.K53K|IPCEF1_uc010kjh.2_Silent_p.K53K	NM_015553	NP_056368	Q8WWN9	ICEF1_HUMAN	phosphoinositide-binding protein PIP3-E isoform	52	PH.				response to oxidative stress	cytoplasm|plasma membrane	oxygen transporter activity|peroxidase activity				0						TTCCCTTTTCCTTTTTCTTAT	0.438													18	24					0	0	0.00152264	0	0
ARID1B	57492	broad.mit.edu	37	6	157405823	157405823	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:157405823C>T	uc003qqn.2	+	5	2004	c.1852C>T	c.(1852-1854)CCC>TCC	p.P618S	ARID1B_uc003qqo.2_Missense_Mutation_p.P631S|ARID1B_uc003qqp.2_Missense_Mutation_p.P618S|ARID1B_uc003qqq.1_Missense_Mutation_p.P60S	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	676					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		TGATGACCTCCCCACGGGAAC	0.502													20	25					0	0	0.00152264	0	0
ARID1B	57492	broad.mit.edu	37	6	157488186	157488186	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:157488186C>A	uc003qqn.2	+	9	2831	c.2679C>A	c.(2677-2679)TTC>TTA	p.F893L	ARID1B_uc003qqo.2_Missense_Mutation_p.F906L|ARID1B_uc003qqp.2_Missense_Mutation_p.F893L|ARID1B_uc010kjl.2_Missense_Mutation_p.F91L	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	951					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		AAGGCAGTTTCCCCGGCATGA	0.522													69	96					1.42954e-44	3.93957e-44	0.00361006	1	0
SYNJ2	8871	broad.mit.edu	37	6	158517304	158517304	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:158517304C>T	uc003qqx.1	+	27	4474	c.4399C>T	c.(4399-4401)CAT>TAT	p.H1467Y	SYNJ2_uc003qqy.1_Missense_Mutation_p.H1180Y|SYNJ2_uc003qqz.1_Missense_Mutation_p.H1084Y|SYNJ2_uc003qra.1_Missense_Mutation_p.H810Y|SYNJ2_uc010kjp.1_Missense_Mutation_p.H350Y	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	1467	Catalytic (By similarity).						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		GCCACCAGATCATGAACACAA	0.527													17	18					0	0	0.000958276	0	0
TAGAP	117289	broad.mit.edu	37	6	159459245	159459245	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:159459245C>T	uc003qrz.2	-	9	1131	c.799G>A	c.(799-801)GAA>AAA	p.E267K	TAGAP_uc011eft.1_Missense_Mutation_p.E204K|TAGAP_uc003qsa.2_Missense_Mutation_p.E89K	NM_054114	NP_473455	Q8N103	TAGAP_HUMAN	T-cell activation Rho GTPase-activating protein	267	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(1)	1		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.16e-16)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		ATGAGGAATTCCACCAGTGTC	0.403													26	29					0	0	0.000878237	0	0
FNDC1	84624	broad.mit.edu	37	6	159660606	159660606	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:159660606G>A	uc010kjv.2	+	14	4438	c.4238G>A	c.(4237-4239)CGA>CAA	p.R1413Q	FNDC1_uc010kjw.1_Missense_Mutation_p.R1298Q	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	1413						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		GGGCAGGGGCGACATGGCACA	0.532													6	8					0	0	0.00198382	0	0
FNDC1	84624	broad.mit.edu	37	6	159687154	159687154	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:159687154G>A	uc010kjv.2	+	21	5523	c.5323G>A	c.(5323-5325)GAT>AAT	p.D1775N		NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	1775						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		TTTCAAACATGATCCCAGCTA	0.468													20	33					0	0	0.000958276	0	0
IGF2R	3482	broad.mit.edu	37	6	160494835	160494835	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:160494835C>T	uc003qta.2	+	35	5142	c.4994C>T	c.(4993-4995)CCC>CTC	p.P1665L		NM_000876	NP_000867	P11717	MPRI_HUMAN	insulin-like growth factor 2 receptor precursor	1665	11.|Lumenal (Potential).				receptor-mediated endocytosis	cell surface|endocytic vesicle|endosome|integral to plasma membrane|lysosomal membrane|trans-Golgi network transport vesicle	glycoprotein binding|insulin-like growth factor receptor activity|phosphoprotein binding|transporter activity			ovary(3)	3		Breast(66;0.000777)|Ovarian(120;0.0305)		OV - Ovarian serous cystadenocarcinoma(65;2.45e-17)|BRCA - Breast invasive adenocarcinoma(81;1.09e-05)		GACTTGTCTCCCCTTATTCAT	0.418													17	24					0	0	0.00188189	0	0
CCR6	1235	broad.mit.edu	37	6	167550831	167550831	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:167550831C>T	uc003qvl.2	+	13	3589	c.1113C>T	c.(1111-1113)TCC>TCT	p.S371S	CCR6_uc010kkm.2_Silent_p.S371S|CCR6_uc003qvn.3_Silent_p.S371S|CCR6_uc003qvm.3_Silent_p.S371S	NM_031409	NP_113597	P51684	CCR6_HUMAN	chemokine (C-C motif) receptor 6	371	Cytoplasmic (Potential).			SSFTM -> VVLHYVIES (in Ref. 4; AAB06949).	cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|humoral immune response	integral to plasma membrane	C-C chemokine receptor activity			ovary(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.0606)		OV - Ovarian serous cystadenocarcinoma(33;8.21e-20)|BRCA - Breast invasive adenocarcinoma(81;4.55e-06)|GBM - Glioblastoma multiforme(31;0.00507)		ATGCGTCGTCCTTCACTATGT	0.368													14	20					0	0	0.00400662	0	0
TTLL2	83887	broad.mit.edu	37	6	167754223	167754223	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:167754223C>T	uc003qvs.1	+	3	923	c.835C>T	c.(835-837)CGG>TGG	p.R279W	TTLL2_uc011egr.1_RNA	NM_031949	NP_114155	Q9BWV7	TTLL2_HUMAN	tubulin tyrosine ligase-like family, member 2	279	TTL.				protein modification process		ATP binding|tubulin-tyrosine ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(66;7.8e-06)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		AGGGTTGGTTCGGTTTGCCAC	0.398													60	76					0	0	0.00361006	0	0
MLLT4	4301	broad.mit.edu	37	6	168352394	168352394	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:168352394C>T	uc003qwd.2	+	29	4478	c.4336C>T	c.(4336-4338)CAG>TAG	p.Q1446*	MLLT4_uc003qwb.1_Nonsense_Mutation_p.Q1431*|MLLT4_uc003qwc.1_Nonsense_Mutation_p.Q1447*|MLLT4_uc003qwg.1_Nonsense_Mutation_p.Q756*	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1447	Potential.				adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		GATGCGCACTCAGTCCTTAAA	0.577			T	MLL	AL								37	40					0	0	0.00222228	0	0
KIF25	3834	broad.mit.edu	37	6	168445589	168445589	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr6:168445589C>T	uc003qwk.1	+	9	1330	c.1068C>T	c.(1066-1068)TTC>TTT	p.F356F	KIF25_uc003qwl.1_Silent_p.F304F	NM_030615	NP_085118	Q9UIL4	KIF25_HUMAN	kinesin family member 25 isoform 1	356					microtubule-based movement|mitotic sister chromatid segregation	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity			ovary(1)|pancreas(1)	2		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		GCCTGGGTTTCGGGATCCGAG	0.562													29	44					0	0	0.00127121	0	0
HEATR2	54919	broad.mit.edu	37	7	813754	813754	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:813754G>A	uc010krz.1	+	10	2021	c.2001G>A	c.(1999-2001)GGG>GGA	p.G667G	HEATR2_uc003siz.2_Silent_p.G535G|HEATR2_uc003sjb.2_Silent_p.G47G|HEATR2_uc003sjc.2_Silent_p.G92G	NM_017802	NP_060272	Q86Y56	HEAT2_HUMAN	HEAT repeat containing 2	667							protein binding			skin(1)	1		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0182)|Epithelial(4;5.48e-17)|OV - Ovarian serous cystadenocarcinoma(56;1.95e-16)|all cancers(6;2.98e-14)		GGCATGCGGGGAGGACAGCCG	0.667													43	61					0	0	0.00321405	0	0
HEATR2	54919	broad.mit.edu	37	7	825182	825182	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:825182C>T	uc010krz.1	+	13	2480	c.2460C>T	c.(2458-2460)TTC>TTT	p.F820F	HEATR2_uc003siz.2_Silent_p.F688F|HEATR2_uc003sjb.2_Silent_p.F200F|HEATR2_uc003sjc.2_Silent_p.F245F	NM_017802	NP_060272	Q86Y56	HEAT2_HUMAN	HEAT repeat containing 2	820	HEAT 10.						protein binding			skin(1)	1		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0182)|Epithelial(4;5.48e-17)|OV - Ovarian serous cystadenocarcinoma(56;1.95e-16)|all cancers(6;2.98e-14)		GCGGGCTGTTCCCAGATCTCC	0.552													72	106					0	0	0.00361006	0	0
AMZ1	155185	broad.mit.edu	37	7	2740289	2740289	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:2740289G>A	uc003smr.1	+	2	565	c.204G>A	c.(202-204)CTG>CTA	p.L68L	AMZ1_uc003sms.1_Silent_p.L68L|AMZ1_uc011jwa.1_5'Flank	NM_133463	NP_597720	Q400G9	AMZ1_HUMAN	archaelysin family metallopeptidase 1	68							metallopeptidase activity|zinc ion binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;5.03e-14)		ACTGGCTCCTGAGCCGACCCG	0.667													45	95					0	0	0.00285205	0	0
RNF216	54476	broad.mit.edu	37	7	5662578	5662579	+	Missense_Mutation	DNP	CC	AA	AA	rs150725128		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:5662578_5662579CC>AA	uc003soy.1	-	17	2703_2704	c.2513_2514GG>TT	c.(2512-2514)CGG>CTT	p.R838L	RNF216_uc010ksz.1_Missense_Mutation_p.R460L|RNF216_uc010kta.1_Missense_Mutation_p.R460L|RNF216_uc011jwj.1_Missense_Mutation_p.R460L|RNF216_uc003sox.1_Missense_Mutation_p.R895L	NM_207116	NP_996999	Q9NWF9	RN216_HUMAN	ring finger protein 216 isoform b	838	Pro-rich.				apoptosis|interspecies interaction between organisms|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination|regulation of defense response to virus by host|regulation of interferon-beta production	cytoplasm|nucleus|nucleus	ligase activity|protein binding|protein binding|zinc ion binding			ovary(3)|breast(2)	5		Ovarian(82;0.07)		UCEC - Uterine corpus endometrioid carcinoma (126;0.135)|OV - Ovarian serous cystadenocarcinoma(56;2.69e-13)		CATAGTTGACCCGCACGTTGGG	0.644													9	197					0	0	6.4e-05	0	0
RSPH10B2	728194	broad.mit.edu	37	7	5983093	5983093	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:5983093G>A	uc003sph.1	-	15	1891	c.1620C>T	c.(1618-1620)TTC>TTT	p.F540F	RSPH10B2_uc003spg.1_Silent_p.F387F|RSPH10B2_uc010ktd.1_Silent_p.F540F|RSPH10B2_uc011jwk.1_Silent_p.F241F	NM_173565	NP_775836	B2RC85	R10B2_HUMAN	radial spoke head 10 homolog B	540										ovary(1)|pancreas(1)|skin(1)	3						GTTGCTCACGGAATAAATTGC	0.378													10	97					0	0	0.00188189	0	0
RSPH10B2	728194	broad.mit.edu	37	7	5998705	5998705	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:5998705G>A	uc003sph.1	-	7	849	c.578C>T	c.(577-579)TCC>TTC	p.S193F	RSPH10B2_uc003spg.1_Missense_Mutation_p.S40F|RSPH10B2_uc010ktd.1_Missense_Mutation_p.S193F|RSPH10B2_uc011jwk.1_Intron	NM_173565	NP_775836	B2RC85	R10B2_HUMAN	radial spoke head 10 homolog B	193	MORN 5.									ovary(1)|pancreas(1)|skin(1)	3						GTAATAAATGGAGCCCTGAAA	0.403													22	58					0	0	0.000878237	0	0
PMS2	5395	broad.mit.edu	37	7	6017358	6017358	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:6017358G>A	uc003spl.2	-	14	2393	c.2306C>T	c.(2305-2307)TCC>TTC	p.S769F	PMS2_uc003spj.2_Missense_Mutation_p.S663F|PMS2_uc003spk.2_Missense_Mutation_p.S634F|PMS2_uc011jwl.1_Missense_Mutation_p.S634F|PMS2_uc010ktg.2_Missense_Mutation_p.S458F|PMS2_uc010kte.2_Missense_Mutation_p.S368F|PMS2_uc010ktf.1_Intron	NM_000535	NP_000526	P54278	PMS2_HUMAN	PMS2 postmeiotic segregation increased 2 isoform	769					mismatch repair|reciprocal meiotic recombination|somatic hypermutation of immunoglobulin genes	MutLalpha complex	ATP binding|ATPase activity|endonuclease activity|protein binding|single base insertion or deletion binding			lung(1)|central_nervous_system(1)	2		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;4.39e-15)		AGTTGGCAAGGAAATCAGTTT	0.463			Mis|N|F			colorectal|endometrial|ovarian|medulloblastoma|glioma		Direct_reversal_of_damage|MMR	Lynch_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				18	121					0	0	0.00188189	0	0
ZNF12	7559	broad.mit.edu	37	7	6731743	6731743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:6731743G>A	uc003sqt.1	-	5	1384	c.830C>T	c.(829-831)TCC>TTC	p.S277F	ZNF12_uc011jxa.1_Missense_Mutation_p.S115F|ZNF12_uc003sqs.1_Missense_Mutation_p.S239F	NM_016265	NP_057349	P17014	ZNF12_HUMAN	zinc finger protein 12 isoform a	277	C2H2-type 1.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0231)		TTTACAGAAGGATTTCCCACA	0.408													71	20					0	0	0.00361006	0	0
MIOS	54468	broad.mit.edu	37	7	7645580	7645580	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:7645580C>T	uc003srf.2	+	12	2717	c.2409C>T	c.(2407-2409)ACC>ACT	p.T803T	MIOS_uc003srg.2_Silent_p.T338T|MIOS_uc010ktq.2_Silent_p.T198T	NM_019005	NP_061878	Q9NXC5	MIO_HUMAN	missing oocyte, meiosis regulator, homolog	803											0						TAGGAGGAACCAAATCAGATG	0.318													22	7					0	0	0.00152264	0	0
THSD7A	221981	broad.mit.edu	37	7	11676263	11676263	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:11676263G>A	uc003ssf.3	-	2	768	c.516C>T	c.(514-516)ATC>ATT	p.I172I		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	172	Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		ACTCACAGATGATATCCTCCG	0.498										HNSCC(18;0.044)			32	53					0	0	0.00283554	0	0
DGKB	1607	broad.mit.edu	37	7	14880849	14880849	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:14880849C>T	uc003ssz.2	-	1	227	c.40G>A	c.(40-42)GAA>AAA	p.E14K	DGKB_uc011jxt.1_Missense_Mutation_p.E14K|DGKB_uc003sta.2_Missense_Mutation_p.E14K|DGKB_uc011jxu.1_Missense_Mutation_p.E14K|DGKB_uc011jxv.1_Missense_Mutation_p.E14K	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	14					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	TGGGAAAATTCCGAAGGGCTG	0.378													33	14					0	0	0.00128727	0	0
PRPS1L1	221823	broad.mit.edu	37	7	18067241	18067241	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:18067241G>A	uc003stz.2	-	1	246	c.165C>T	c.(163-165)ATC>ATT	p.I55I		NM_175886	NP_787082	P21108	PRPS3_HUMAN	phosphoribosyl pyrophosphate synthetase 1-like	55					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			ovary(1)	1	Lung NSC(10;0.0385)|all_lung(11;0.0736)					CACTCTGAACGATGTAGACAT	0.493													195	302					0	0	0.00361006	0	0
ITGB8	3696	broad.mit.edu	37	7	20420314	20420314	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:20420314C>T	uc003suu.2	+	5	1366	c.661C>T	c.(661-663)CCC>TCC	p.P221S	ITGB8_uc011jyh.1_Missense_Mutation_p.P86S|ITGB8_uc003sut.2_Missense_Mutation_p.P221S	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	221	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						CTGCATGCCTCCCCATGGATA	0.383													21	94					0	0	0.00229938	0	0
DNAH11	8701	broad.mit.edu	37	7	21856193	21856193	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:21856193G>A	uc003svc.2	+	65	10493	c.10462G>A	c.(10462-10464)GAA>AAA	p.E3488K		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3488	AAA 5 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AATGTCCACCGAAAATGCCGC	0.493									Kartagener_syndrome				15	5					0	0	0.00244969	0	0
DNAH11	8701	broad.mit.edu	37	7	21920455	21920455	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:21920455G>A	uc003svc.2	+	76	12383	c.12352G>A	c.(12352-12354)GGA>AGA	p.G4118R		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	4118	AAA 6 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TTTTAATCCTGGAGACCTCAC	0.468									Kartagener_syndrome				14	59					0	0	0.00316338	0	0
DFNA5	1687	broad.mit.edu	37	7	24745866	24745866	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:24745866G>A	uc010kus.1	-	8	1208	c.1120C>T	c.(1120-1122)CCC>TCC	p.P374S	DFNA5_uc003swz.2_Missense_Mutation_p.P210S|DFNA5_uc003sxa.1_Missense_Mutation_p.P374S|DFNA5_uc010kut.1_Missense_Mutation_p.P210S	NM_001127453	NP_001120925	O60443	DFNA5_HUMAN	deafness, autosomal dominant 5 protein isoform	374					sensory perception of sound					ovary(1)	1						GCATCCTCGGGGCCCGGACAC	0.597													29	48					0	0	0.0024448	0	0
DFNA5	1687	broad.mit.edu	37	7	24749959	24749959	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:24749959C>T	uc010kus.1	-	6	834	c.746G>A	c.(745-747)AGA>AAA	p.R249K	DFNA5_uc003swz.2_Missense_Mutation_p.R85K|DFNA5_uc003sxa.1_Missense_Mutation_p.R249K|DFNA5_uc010kut.1_Missense_Mutation_p.R85K	NM_001127453	NP_001120925	O60443	DFNA5_HUMAN	deafness, autosomal dominant 5 protein isoform	249					sensory perception of sound					ovary(1)	1						AGAGTCAATTCTCTTCTTGTT	0.488													31	113					0	0	0.00327116	0	0
SKAP2	8935	broad.mit.edu	37	7	26883685	26883685	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:26883685C>T	uc003syc.2	-	4	564	c.271G>A	c.(271-273)GAA>AAA	p.E91K	SKAP2_uc011jzi.1_5'UTR|SKAP2_uc011jzj.1_Missense_Mutation_p.E76K	NM_003930	NP_003921	O75563	SKAP2_HUMAN	src kinase associated phosphoprotein 2	91					B cell activation|cell junction assembly|protein complex assembly|signal transduction	cytosol|plasma membrane	SH3/SH2 adaptor activity			pancreas(1)	1						TCATATCGTTCTGAGGCTAAT	0.403													36	205					0	0	0.00128727	0	0
HOXA3	3200	broad.mit.edu	37	7	27148121	27148121	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:27148121C>T	uc011jzl.1	-	3	945	c.745G>A	c.(745-747)GAT>AAT	p.D249N	HOXA3_uc011jzk.1_Missense_Mutation_p.D91N|HOXA3_uc003syk.2_Missense_Mutation_p.D249N	NM_030661	NP_109377	O43365	HXA3_HUMAN	homeobox A3 isoform a	249	Homeobox.				angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(2)	2						CCCTTCTGATCCTTTTTGTAC	0.602													22	100					0	0	0.00278032	0	0
TAX1BP1	8887	broad.mit.edu	37	7	27797749	27797749	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:27797749C>A	uc003szl.2	+	3	420	c.262C>A	c.(262-264)CAA>AAA	p.Q88K	TAX1BP1_uc011jzo.1_Missense_Mutation_p.Q88K|TAX1BP1_uc003szk.2_Missense_Mutation_p.Q88K|TAX1BP1_uc011jzp.1_5'UTR	NM_006024	NP_006015	Q86VP1	TAXB1_HUMAN	Tax1 (human T-cell leukemia virus type I)	88					anti-apoptosis|apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production	cytosol	identical protein binding|kinase binding|zinc ion binding			breast(1)	1			GBM - Glioblastoma multiforme(3;0.0823)			ACTAGCATTCCAAGGTAAGGA	0.348													12	570					0.00244969	0.00664202	0.00244969	1	0
FAM188B	84182	broad.mit.edu	37	7	30911861	30911861	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:30911861C>T	uc003tbt.2	+	14	1826	c.1749C>T	c.(1747-1749)ATC>ATT	p.I583I	FAM188B_uc010kwe.2_Silent_p.I554I|AQP1_uc011kac.1_5'UTR|FAM188B_uc003tbu.2_Silent_p.I103I	NM_032222	NP_115598	Q4G0A6	F188B_HUMAN	hypothetical protein LOC84182	583											0						TTTCCAGCATCCGCCAGGACT	0.592													5	32					0	0	0.00116845	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31102932	31102932	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:31102932G>A	uc003tca.1	+	2	274	c.51_splice	c.e2+1	p.M17_splice	ADCYAP1R1_uc003tcb.1_Splice_Site_p.M17_splice|ADCYAP1R1_uc003tcc.1_Splice_Site_p.M17_splice|ADCYAP1R1_uc003tcd.1_Splice_Site_p.M17_splice|ADCYAP1R1_uc003tce.1_Splice_Site_p.M17_splice	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1						activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						GCTGCCTATGGTAAGGGCCCA	0.592													10	79					0	0	0.000673444	0	0
CCDC129	223075	broad.mit.edu	37	7	31692375	31692375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:31692375G>A	uc003tcj.1	+	14	4060	c.3067G>A	c.(3067-3069)GCA>ACA	p.A1023T	CCDC129_uc011kad.1_Missense_Mutation_p.A1033T|CCDC129_uc003tci.1_Missense_Mutation_p.A874T|CCDC129_uc011kae.1_Intron|CCDC129_uc003tck.1_Missense_Mutation_p.A931T	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	1023											0						ATCAGCTTGGGCAAAGTTAGG	0.502													48	23					0	0	0.00361006	0	0
PDE1C	5137	broad.mit.edu	37	7	31918629	31918629	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:31918629C>T	uc003tcm.1	-	4	874	c.405G>A	c.(403-405)CAG>CAA	p.Q135Q	PDE1C_uc003tcn.1_Silent_p.Q135Q|PDE1C_uc003tco.1_Silent_p.Q195Q|PDE1C_uc003tcr.2_Silent_p.Q135Q|PDE1C_uc003tcs.2_Silent_p.Q135Q	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	135					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			ATATCCCAGCCTGCACTGCGT	0.507													11	77					0	0	0.00244969	0	0
NPSR1	387129	broad.mit.edu	37	7	34851472	34851472	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:34851472G>A	uc003teg.1	+	4	603	c.475G>A	c.(475-477)GGA>AGA	p.G159R	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.G159R|NPSR1_uc010kwt.1_Missense_Mutation_p.G6R|NPSR1_uc010kwu.1_Intron|NPSR1_uc010kwv.1_Intron|NPSR1_uc003tei.1_Missense_Mutation_p.G159R|NPSR1_uc010kww.1_Missense_Mutation_p.G148R|NPSR1_uc011kar.1_Intron|AAA1_uc010kwy.2_Intron|AAA1_uc003tek.3_Intron	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	159	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	GTTCCTTCAAGGAGGTGAGCT	0.443													26	116					0	0	0.001512	0	0
ELMO1	9844	broad.mit.edu	37	7	37354483	37354483	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:37354483C>T	uc003tfk.1	-	4	470	c.163G>A	c.(163-165)GAT>AAT	p.D55N	ELMO1_uc010kxg.1_Missense_Mutation_p.D55N	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	55					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						TTTGAACTATCGGCATGCTGG	0.323													23	32					0	0	0.001512	0	0
TXNDC3	51314	broad.mit.edu	37	7	37916489	37916489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:37916489G>A	uc003tfn.2	+	12	1246	c.874G>A	c.(874-876)GAT>AAT	p.D292N		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	292					cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						CATTGAAGAGGATGCAGCTAA	0.323									Kartagener_syndrome				10	56					0	0	0.000673444	0	0
TARP	445347	broad.mit.edu	37	7	38305208	38305208	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:38305208G>A	uc003tge.1	-	5	876	c.499C>T	c.(499-501)CAG>TAG	p.Q167*	uc003tfz.1_Intron|TARP_uc003tgb.2_5'UTR|TARP_uc003tgc.1_5'UTR|TARP_uc003tgd.1_5'UTR|TARP_uc010kxi.1_RNA|TARP_uc003tgf.1_RNA|TARP_uc003tgj.1_RNA|TARP_uc003tgh.1_RNA|TARP_uc003tgi.1_RNA|TARP_uc003tgg.1_RNA			A2JGV3	A2JGV3_HUMAN	Homo sapiens TCRgamma alternate reading frame protein (TCRg) mRNA, complete cds.	Error:Variant_position_missing_in_A2JGV3_after_alignment											0						CCAGCCTTCTGGAGCTTTGTT	0.383													90	320					0	0	0.00361006	0	0
AMPH	273	broad.mit.edu	37	7	38431535	38431535	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:38431535C>T	uc003tgu.2	-	19	1761	c.1692G>A	c.(1690-1692)GAG>GAA	p.E564E	AMPH_uc003tgv.2_Silent_p.E522E|AMPH_uc003tgt.2_Silent_p.E449E|AMPH_uc003tgw.1_Silent_p.E587E|AMPH_uc010kxl.1_RNA	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	564					endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						TCTCCTTGGGCTCTGCACCTA	0.592													12	62					0	0	0.000978159	0	0
POU6F2	11281	broad.mit.edu	37	7	39504103	39504103	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:39504103C>T	uc003thb.1	+	10	1936	c.1894C>T	c.(1894-1896)CCT>TCT	p.P632S		NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	632	Homeobox (By similarity).				central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						GAACACACACCCTTCTGGGCA	0.502													6	24					0	0	0.00198382	0	0
GLI3	2737	broad.mit.edu	37	7	42004030	42004030	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:42004030G>A	uc011kbh.1	-	15	4732	c.4641C>T	c.(4639-4641)TTC>TTT	p.F1547F	GLI3_uc011kbg.1_Silent_p.F1488F	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	1547					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						ACAGCGCTGGGAATGGGAGGG	0.567									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				9	60					0	0	0.000673444	0	0
GLI3	2737	broad.mit.edu	37	7	42005516	42005516	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:42005516G>A	uc011kbh.1	-	15	3246	c.3155C>T	c.(3154-3156)CCC>CTC	p.P1052L	GLI3_uc011kbg.1_Missense_Mutation_p.P993L	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	1052					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						GCCGCCCTCGGGCCGCGTGTA	0.657									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				31	50					0	0	0.00178596	0	0
HECW1	23072	broad.mit.edu	37	7	43484569	43484569	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:43484569C>T	uc003tid.1	+	11	2403	c.1798C>T	c.(1798-1800)CTC>TTC	p.L600F	HECW1_uc011kbi.1_Missense_Mutation_p.L600F	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	600					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						GAAGGATGGGCTCAGCGAGGT	0.701													6	32					0	0	0.00198382	0	0
MRPS24	64951	broad.mit.edu	37	7	43906562	43906562	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:43906562G>A	uc003tit.1	-	4	291	c.240C>T	c.(238-240)GAC>GAT	p.D80D		NM_032014	NP_114403	Q96EL2	RT24_HUMAN	mitochondrial ribosomal protein S24 precursor	80					translation	mitochondrial large ribosomal subunit|mitochondrial small ribosomal subunit	protein binding|structural constituent of ribosome				0						CTGCGGCATGGTCCTCTCCAT	0.552													60	15					0	0	0.00361006	0	0
NPC1L1	29881	broad.mit.edu	37	7	44561837	44561837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:44561837G>A	uc003tlb.2	-	11	2698	c.2642C>T	c.(2641-2643)TCG>TTG	p.S881L	NPC1L1_uc003tlc.2_Missense_Mutation_p.S881L|NPC1L1_uc011kbw.1_Intron|NPC1L1_uc003tla.2_5'Flank	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	881	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	AAGCAGGTACGAGTCCTAGGA	0.542													24	2					0	0	0.00332997	0	0
PPIA	5478	broad.mit.edu	37	7	44838999	44838999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:44838999C>T	uc003tlw.2	+	3	192	c.109C>T	c.(109-111)CGT>TGT	p.R37C	PPIA_uc003tlx.2_RNA|PPIA_uc010kyl.2_RNA	NM_021130	NP_066953	P62937	PPIA_HUMAN	peptidylprolyl isomerase A	37	PPIase cyclophilin-type.				entry into host cell|leukocyte migration|platelet activation|platelet degranulation|protein folding|provirus integration|regulation of viral genome replication|RNA-dependent DNA replication|uncoating of virus	cytosol|extracellular region|nucleus	peptide binding|peptidyl-prolyl cis-trans isomerase activity|unfolded protein binding|virion binding				0					Cyclosporine(DB00091)|L-Proline(DB00172)	AGAAAATTTTCGTGCTCTGAG	0.264													31	142					0	0	0.00209593	0	0
SUN3	256979	broad.mit.edu	37	7	48046893	48046893	+	Missense_Mutation	SNP	G	A	A	rs139673000		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:48046893G>A	uc003tof.2	-	6	458	c.361C>T	c.(361-363)CGT>TGT	p.R121C	SUN3_uc010kyq.2_Missense_Mutation_p.R21C|SUN3_uc003tog.2_Missense_Mutation_p.R121C|SUN3_uc011kcf.1_Missense_Mutation_p.R109C	NM_152782	NP_689995	Q8TAQ9	SUN3_HUMAN	Sad1 and UNC84 domain containing 1	121	Potential.					integral to membrane				central_nervous_system(1)	1						AGAATTTGACGAAAATTGTTT	0.403													10	74					0	0	0.000442599	0	0
ABCA13	154664	broad.mit.edu	37	7	48288868	48288868	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:48288868C>T	uc003toq.2	+	15	1950	c.1925C>T	c.(1924-1926)GCC>GTC	p.A642V	ABCA13_uc010kyr.2_Missense_Mutation_p.A145V	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	642					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TATTGGAAAGCCTTCAAAAAG	0.328													11	84					0	0	0.00136819	0	0
ABCA13	154664	broad.mit.edu	37	7	48314904	48314904	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:48314904G>A	uc003toq.2	+	17	5666	c.5641G>A	c.(5641-5643)GAA>AAA	p.E1881K	ABCA13_uc010kyr.2_Missense_Mutation_p.E1384K	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	1881					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CTCCCGAATGGAAATAACTAG	0.403													11	94					0	0	0.000978159	0	0
DDC	1644	broad.mit.edu	37	7	50607688	50607688	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:50607688G>A	uc003tpf.3	-	3	326	c.240C>T	c.(238-240)TTC>TTT	p.F80F	DDC_uc010kza.2_Silent_p.F80F|DDC_uc003tpg.3_Silent_p.F80F	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	80	1.|2 X approximate tandem repeats.				cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	TGGCAGTGGGGAAGTAGGCGA	0.642													9	25					0	0	0.000442599	0	0
COBL	23242	broad.mit.edu	37	7	51095722	51095722	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:51095722G>A	uc003tpr.3	-	10	3256	c.3071C>T	c.(3070-3072)CCA>CTA	p.P1024L	COBL_uc003tps.2_Missense_Mutation_p.P1081L|COBL_uc011kcl.1_Missense_Mutation_p.P1024L|COBL_uc003tpp.3_Missense_Mutation_p.P810L|COBL_uc003tpq.3_Missense_Mutation_p.P965L|COBL_uc003tpo.3_Missense_Mutation_p.P566L	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	1024	Poly-Pro.									skin(3)|ovary(2)	5	Glioma(55;0.08)					AGATGTGTGTGGAGGGGGTGG	0.632													21	39					0	0	0.00229938	0	0
COBL	23242	broad.mit.edu	37	7	51096981	51096981	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:51096981G>A	uc003tpr.3	-	10	1997	c.1812C>T	c.(1810-1812)TCC>TCT	p.S604S	COBL_uc003tps.2_Silent_p.S661S|COBL_uc011kcl.1_Silent_p.S604S|COBL_uc003tpp.3_Silent_p.S390S|COBL_uc003tpq.3_Silent_p.S545S|COBL_uc003tpo.3_Silent_p.S146S	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	604										skin(3)|ovary(2)	5	Glioma(55;0.08)					CGACGTCATGGGAAGCGGGGT	0.547													18	83					0	0	0.00121646	0	0
POM121L12	285877	broad.mit.edu	37	7	53103888	53103888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:53103888G>A	uc003tpz.2	+	1	540	c.524G>A	c.(523-525)CGG>CAG	p.R175Q		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	175											0						CCCTGCACCCGGGAGACTCTG	0.587													9	39					0	0	0.000274275	0	0
VSTM2A	222008	broad.mit.edu	37	7	54612448	54612448	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:54612448C>T	uc010kzf.2	+	2	618	c.213C>T	c.(211-213)GAC>GAT	p.D71D	VSTM2A_uc010kze.2_Silent_p.D71D|VSTM2A_uc003tqc.3_Silent_p.D71D	NM_182546	NP_872352	Q8TAG5	VTM2A_HUMAN	V-set and transmembrane domain containing 2	71	Ig-like V-type.					extracellular region					0			STAD - Stomach adenocarcinoma(5;0.0525)			GGCCGGAGGACCTGGATCCCG	0.731													11	29					0	0	0.00185496	0	0
VSTM2A	222008	broad.mit.edu	37	7	54617573	54617573	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:54617573C>T	uc010kzf.2	+	4	749	c.344C>T	c.(343-345)TCC>TTC	p.S115F	VSTM2A_uc010kze.2_Missense_Mutation_p.S115F|VSTM2A_uc003tqc.3_Missense_Mutation_p.S115F	NM_182546	NP_872352	Q8TAG5	VTM2A_HUMAN	V-set and transmembrane domain containing 2	115	Ig-like V-type.					extracellular region					0			STAD - Stomach adenocarcinoma(5;0.0525)			CTTCAGATTTCCAAAGTGAGG	0.423													40	14					0	0	0.00321405	0	0
VOPP1	81552	broad.mit.edu	37	7	55560099	55560099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:55560099C>T	uc003tqs.2	-	4	387	c.204G>A	c.(202-204)ATG>ATA	p.M68I	VOPP1_uc003tqq.2_Missense_Mutation_p.M59I|VOPP1_uc010kzh.2_Missense_Mutation_p.M65I|VOPP1_uc010kzi.2_Missense_Mutation_p.M51I|VOPP1_uc011kcr.1_5'UTR	NM_030796	NP_110423	Q96AW1	VOPP1_HUMAN	EGFR-coamplified and overexpressed protein	68	Helical; (Potential).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic vesicle membrane|endosome|integral to organelle membrane	signal transducer activity				0						GCACGCCCATCATCAGAAGGA	0.617													4	19					0	0	0.000602214	0	0
FKBP9L	360132	broad.mit.edu	37	7	55766705	55766705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:55766705C>T	uc010kzl.2	-	2	179	c.79G>A	c.(79-81)GAA>AAA	p.E27K		NR_003949				SubName: Full=cDNA, FLJ79189, highly similar to FK506-binding protein 9 (EC 5.2.1.8);												0						CCTCTTCCTTCCTCTCCATAC	0.488													14	18					0	0	0.00185496	0	0
CCT6A	908	broad.mit.edu	37	7	56126106	56126106	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:56126106C>T	uc003trl.1	+	7	941	c.777C>T	c.(775-777)CTC>CTT	p.L259L	PSPH_uc003trj.2_Intron|CCT6A_uc003trm.1_Silent_p.L214L|CCT6A_uc011kcu.1_Silent_p.L228L|SNORA15_uc003trn.1_5'Flank	NM_001762	NP_001753	P40227	TCPZ_HUMAN	chaperonin containing TCP1, subunit 6A isoform	259					'de novo' posttranslational protein folding	cytosol	ATP binding|unfolded protein binding			upper_aerodigestive_tract(1)	1	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			GAGAAAAACTCGTGAAAGCTG	0.313													13	70					0	0	0.00244969	0	0
ZNF92	168374	broad.mit.edu	37	7	64864337	64864337	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:64864337C>T	uc003ttz.2	+	4	1453	c.1310C>T	c.(1309-1311)TCC>TTC	p.S437F	ZNF92_uc003tua.2_Missense_Mutation_p.S368F|ZNF92_uc010kzu.2_Missense_Mutation_p.S405F|ZNF92_uc003tub.2_Missense_Mutation_p.S361F	NM_152626	NP_689839	Q03936	ZNF92_HUMAN	zinc finger protein 92 isoform 2	437	C2H2-type 11.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(55;0.159)				TTTAGCTGGTCCTCAGCTTTT	0.363													13	16					0	0	0.00185496	0	0
MLXIPL	51085	broad.mit.edu	37	7	73010233	73010233	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:73010233C>T	uc003tyn.1	-	14	2173	c.2125G>A	c.(2125-2127)GGC>AGC	p.G709S	MLXIPL_uc003tyj.1_Missense_Mutation_p.G88S|MLXIPL_uc003tyk.1_Missense_Mutation_p.G688S|MLXIPL_uc003tyl.1_Missense_Mutation_p.G707S|MLXIPL_uc003tym.1_Missense_Mutation_p.G690S|MLXIPL_uc003tyo.1_RNA|MLXIPL_uc003typ.1_Missense_Mutation_p.G615S	NM_032951	NP_116569	Q9NP71	WBS14_HUMAN	Williams Beuren syndrome chromosome region 14	709	Leucine-zipper.				anatomical structure morphogenesis|energy reserve metabolic process|glucose mediated signaling pathway|intracellular protein kinase cascade|negative regulation of cell cycle arrest|negative regulation of oxidative phosphorylation|negative regulation of peptidyl-serine phosphorylation|positive regulation of cell proliferation|positive regulation of fatty acid biosynthetic process|positive regulation of glycolysis|positive regulation of transcription from RNA polymerase II promoter|triglyceride homeostasis	cytosol|transcription factor complex	carbohydrate response element binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				TCCTGCAAGCCCGCACGCTCC	0.632													30	0					0	0	0.00178596	0	0
ELN	2006	broad.mit.edu	37	7	73483003	73483003	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:73483003G>A	uc003tzw.2	+	33	2257	c.2166G>A	c.(2164-2166)GGG>GGA	p.G722G	RFC2_uc011kfa.1_Intron|ELN_uc003tzn.2_Silent_p.G716G|ELN_uc003tzz.2_Silent_p.G635G|ELN_uc003tzo.2_Silent_p.G650G|ELN_uc003tzp.2_Silent_p.G609G|ELN_uc003tzq.2_Silent_p.G562G|ELN_uc003tzr.2_RNA|ELN_uc003tzs.2_Silent_p.G697G|ELN_uc003tzt.2_Silent_p.G703G|ELN_uc003tzu.2_Silent_p.G684G|ELN_uc003tzv.2_Silent_p.G669G|ELN_uc003tzx.2_Silent_p.G706G|ELN_uc011kff.1_Silent_p.G698G|ELN_uc003tzy.2_Silent_p.G692G	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	778					blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	CCTGCCTGGGGAAAGCTTGTG	0.577			T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						20	67					0	0	0.00229938	0	0
ABCB4	5244	broad.mit.edu	37	7	87032569	87032569	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:87032569C>T	uc003uiv.1	-	27	3612	c.3536G>A	c.(3535-3537)GGG>GAG	p.G1179E	ABCB4_uc003uiw.1_Missense_Mutation_p.G1172E|ABCB4_uc003uix.1_Missense_Mutation_p.G1125E	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	1179	ABC transporter 2.|Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					GAGCTGAGTCCCCTTATCTCC	0.408													36	88					0	0	0.00128727	0	0
STEAP4	79689	broad.mit.edu	37	7	87910343	87910343	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:87910343C>T	uc003ujs.2	-	4	1141	c.1036G>A	c.(1036-1038)GAT>AAT	p.D346N	STEAP4_uc010lek.2_Missense_Mutation_p.D170N	NM_024636	NP_078912	Q687X5	STEA4_HUMAN	tumor necrosis factor, alpha-induced protein 9	346	Ferric oxidoreductase.				fat cell differentiation|ion transport|iron ion homeostasis	Golgi membrane|integral to membrane|plasma membrane	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0	Esophageal squamous(14;0.00802)					ACATATGAATCACTGAGCCAG	0.378													10	32					0	0	0.000442599	0	0
SAMD9L	219285	broad.mit.edu	37	7	92763134	92763134	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:92763134C>T	uc003umh.1	-	5	3367	c.2151G>A	c.(2149-2151)AAG>AAA	p.K717K	SAMD9L_uc003umj.1_Silent_p.K717K|SAMD9L_uc003umi.1_Silent_p.K717K|SAMD9L_uc010lfb.1_Silent_p.K717K|SAMD9L_uc003umk.1_Silent_p.K717K|SAMD9L_uc010lfc.1_Silent_p.K717K|SAMD9L_uc010lfd.1_Silent_p.K717K|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	717										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			AATCTTTAAGCTTTTCATAAC	0.368													26	18					0	0	0.000720815	0	0
COL1A2	1278	broad.mit.edu	37	7	94055744	94055744	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:94055744G>A	uc003ung.1	+	46	3478	c.3007G>A	c.(3007-3009)GGC>AGC	p.G1003S	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	1003			G -> D (in OI2A).		axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	GGGCCCACAAGGCATTCGTGG	0.468										HNSCC(75;0.22)			16	1					0	0	0.00400662	0	0
COL1A2	1278	broad.mit.edu	37	7	94058723	94058723	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:94058723T>C	uc003ung.1	+	51	4406	c.3935T>C	c.(3934-3936)GTT>GCT	p.V1312A	COL1A2_uc011kib.1_Missense_Mutation_p.V164A	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	1312	Fibrillar collagen NC1.				axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	ACTTACACTGTTCTTGTAGAT	0.478										HNSCC(75;0.22)			53	3					0	0	0.00361006	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94879550	94879550	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:94879550C>T	uc003unp.2	+	9	2595	c.2313C>T	c.(2311-2313)ATC>ATT	p.I771I	PPP1R9A_uc010lfj.2_Silent_p.I793I|PPP1R9A_uc011kif.1_Silent_p.I771I|PPP1R9A_uc003unq.2_Silent_p.I771I|PPP1R9A_uc011kig.1_Silent_p.I771I	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	771	Interacts with TGN38 (By similarity).|Potential.					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			AGAAGTTGATCAAGGATTTTC	0.353										HNSCC(28;0.073)			34	14					0	0	0.00428921	0	0
TRIP6	7205	broad.mit.edu	37	7	100468258	100468258	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:100468258C>T	uc003uww.2	+	6	1062	c.892C>T	c.(892-894)CGC>TGC	p.R298C	TRIP6_uc010lhk.1_RNA	NM_003302	NP_003293	Q15654	TRIP6_HUMAN	thyroid receptor-interacting protein 6	298	LIM zinc-binding 1.				focal adhesion assembly|positive regulation of cell migration|regulation of transcription, DNA-dependent|release of cytoplasmic sequestered NF-kappaB|transcription, DNA-dependent	cytoplasm|cytoskeleton|focal adhesion|nucleus	identical protein binding|interleukin-1 receptor binding|kinase binding|thyroid hormone receptor binding|zinc ion binding			central_nervous_system(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)					GGCCCTTGATCGCGTCTTTCA	0.597													75	8					0	0	0.00361006	0	0
MUC17	140453	broad.mit.edu	37	7	100678869	100678869	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:100678869C>A	uc003uxp.1	+	3	4225	c.4172C>A	c.(4171-4173)CCT>CAT	p.P1391H	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1391	Extracellular (Potential).|59 X approximate tandem repeats.|21.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AACTCAAATCCTAGTGAAGGA	0.493													163	99					3.04171e-70	8.38549e-70	0.00361006	1	0
SERPINE1	5054	broad.mit.edu	37	7	100771899	100771899	+	Silent	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:100771899A>C	uc003uxt.2	+	2	373	c.225A>C	c.(223-225)GGA>GGC	p.G75G	SERPINE1_uc011kkj.1_Silent_p.G60G|SERPINE1_uc003uxu.1_5'Flank	NM_000602	NP_000593	P05121	PAI1_HUMAN	plasminogen activator inhibitor-1 isoform 1	75				G -> V (in Ref. 7; CAA31208).	angiogenesis|cellular response to chemical stimulus|cellular response to lipopolysaccharide|chronological cell aging|defense response to Gram-negative bacterium|fibrinolysis|negative regulation of apoptosis|negative regulation of cell adhesion mediated by integrin|negative regulation of fibrinolysis|negative regulation of plasminogen activation|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell-matrix adhesion|negative regulation of vascular wound healing|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of interleukin-8 production|positive regulation of leukotriene production involved in inflammatory response|positive regulation of monocyte chemotaxis|positive regulation of receptor-mediated endocytosis|regulation of receptor activity	extracellular matrix|extracellular space|plasma membrane|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity			ovary(1)|lung(1)|central_nervous_system(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)				Atorvastatin(DB01076)|Dimethyl sulfoxide(DB01093)|Drotrecogin alfa(DB00055)|Simvastatin(DB00641)|Tenecteplase(DB00031)|Troglitazone(DB00197)|Urokinase(DB00013)	CAACAGGAGGAGAAACCCAGC	0.577													19	22					0	0	0.000958276	0	0
FBXL13	222235	broad.mit.edu	37	7	102495290	102495290	+	Silent	SNP	G	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:102495290G>T	uc003vaq.2	-	17	2080	c.1653C>A	c.(1651-1653)TCC>TCA	p.S551S	FBXL13_uc010liq.1_Intron|FBXL13_uc010lir.1_Silent_p.S551S|FBXL13_uc003var.2_RNA|FBXL13_uc003vas.2_Intron	NM_145032	NP_659469	Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13 isoform	551	LRR 13.										0						TTTTATGTCTGGAAAGCACAT	0.264													15	4					1.49906e-05	4.09238e-05	0.00244969	1	0
PIK3CG	5294	broad.mit.edu	37	7	106509277	106509277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:106509277C>T	uc003vdv.3	+	2	1356	c.1271C>T	c.(1270-1272)CCC>CTC	p.P424L	PIK3CG_uc003vdu.2_Missense_Mutation_p.P424L|PIK3CG_uc003vdw.2_Missense_Mutation_p.P424L	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	424					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						AAAGACTTGCCCAAAGGGGCT	0.522													48	3					0	0	0.00361006	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113519909	113519909	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:113519909C>T	uc010ljy.1	-	4	1269	c.1238G>A	c.(1237-1239)GGA>GAA	p.G413E		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	413					glycogen metabolic process	integral to membrane		p.G413G(1)		lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						CTTGATTTCTCCCATATTTGA	0.403													15	57					0	0	0.00074312	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113558876	113558876	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:113558876G>A	uc010ljy.1	-	1	207	c.176C>T	c.(175-177)TCA>TTA	p.S59L		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	59					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TCTAGTACCTGAAGATGGGGT	0.403													29	20					0	0	0.000878237	0	0
FOXP2	93986	broad.mit.edu	37	7	114304412	114304412	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:114304412C>T	uc003vhb.2	+	16	2298	c.1924C>T	c.(1924-1926)CAC>TAC	p.H642Y	FOXP2_uc003vgu.2_RNA|FOXP2_uc003vgz.2_Missense_Mutation_p.H667Y|FOXP2_uc003vha.2_Missense_Mutation_p.H550Y|FOXP2_uc011kmu.1_Missense_Mutation_p.H659Y|FOXP2_uc011kmv.1_Missense_Mutation_p.H641Y|FOXP2_uc010ljz.1_Missense_Mutation_p.H457Y	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I	642					camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						GCAGGCCGTCCACGAAGACCT	0.488													33	9					0	0	0.0024448	0	0
FOXP2	93986	broad.mit.edu	37	7	114329980	114329980	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:114329980G>A	uc003vhb.2	+	17	2521	c.2147G>A	c.(2146-2148)TGA>TAA	p.*716*	FOXP2_uc003vgu.2_RNA|FOXP2_uc003vgz.2_Silent_p.*741*|FOXP2_uc003vha.2_Silent_p.*624*|FOXP2_uc011kmu.1_Silent_p.*733*|FOXP2_uc011kmv.1_Silent_p.*715*|FOXP2_uc010ljz.1_Silent_p.*531*	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I	716					camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						GATCTGGAATGAGAACTGACT	0.403													10	32					0	0	0.000978159	0	0
MET	4233	broad.mit.edu	37	7	116339428	116339428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:116339428C>T	uc003vij.2	+	2	477	c.290C>T	c.(289-291)CCA>CTA	p.P97L	MET_uc010lkh.2_Missense_Mutation_p.P97L|MET_uc011knc.1_Missense_Mutation_p.P97L|MET_uc011knd.1_Missense_Mutation_p.P97L|MET_uc011kne.1_Missense_Mutation_p.P97L|MET_uc011knf.1_Missense_Mutation_p.P97L|MET_uc011kng.1_Missense_Mutation_p.P97L|MET_uc011knh.1_Missense_Mutation_p.P97L|MET_uc011kni.1_Missense_Mutation_p.P97L|MET_uc003vii.1_Missense_Mutation_p.P116L|MET_uc010lkg.2_Missense_Mutation_p.P97L|MET_uc011kmz.1_Missense_Mutation_p.P97L|MET_uc011kna.1_Missense_Mutation_p.P97L|MET_uc011knb.1_Missense_Mutation_p.P97L	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	97	Extracellular (Potential).|Sema.				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			GATTGTTTCCCATGTCAGGAC	0.443			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				12	49					0	0	0.000978159	0	0
ST7	7982	broad.mit.edu	37	7	116870013	116870013	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:116870013C>T	uc011knn.1	+	14	1545	c.1540C>T	c.(1540-1542)CCA>TCA	p.P514S	ST7_uc003vio.2_3'UTR|ST7_uc003viq.2_3'UTR|ST7_uc011knm.1_3'UTR|ST7_uc003vir.2_3'UTR	NM_021908	NP_068708	Q9NRC1	ST7_HUMAN	suppression of tumorigenicity 7 isoform b	Error:Variant_position_missing_in_Q9NRC1_after_alignment						integral to membrane	binding			central_nervous_system(1)|skin(1)	2	all_cancers(3;3.88e-07)|all_epithelial(6;3.42e-07)|Lung NSC(10;0.00072)|all_lung(10;0.000847)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		AAAAGGGAAGCCATTCCGAGA	0.428													17	7					0	0	0.00400662	0	0
ASZ1	136991	broad.mit.edu	37	7	117060321	117060321	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:117060321T>A	uc003vjb.2	-	4	399	c.336A>T	c.(334-336)CAA>CAT	p.Q112H	ASZ1_uc011kno.1_Missense_Mutation_p.Q112H|ASZ1_uc011knp.1_5'UTR	NM_130768	NP_570124	Q8WWH4	ASZ1_HUMAN	ankyrin repeat, SAM and basic leucine zipper	112	ANK 3.				cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(10;0.00156)|all_lung(10;0.00175)		STAD - Stomach adenocarcinoma(10;0.000512)			TCAAAATACTTTGCTTATCTA	0.308													15	69					0	0	0.00400662	0	0
CFTR	1080	broad.mit.edu	37	7	117175322	117175322	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:117175322C>T	uc003vjd.2	+	6	732	c.600C>T	c.(598-600)TTC>TTT	p.F200F	CFTR_uc011knq.1_5'UTR	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	200	Helical; Name=3; (Potential).|ABC transmembrane type-1 1.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TGGCACATTTCGTGTGGATCG	0.453									Cystic_Fibrosis				56	198					0	0	0.00361006	0	0
CFTR	1080	broad.mit.edu	37	7	117282597	117282597	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:117282597G>A	uc003vjd.2	+	23	3955	c.3823G>A	c.(3823-3825)GAT>AAT	p.D1275N	CFTR_uc011knq.1_Missense_Mutation_p.D681N	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	1275	Cytoplasmic (Potential).|ABC transporter 2.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TGTGTCTTGGGATTCAATAAC	0.403									Cystic_Fibrosis				19	18					0	0	0.00121646	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121652699	121652699	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:121652699C>T	uc003vjy.2	+	12	3994	c.3599C>T	c.(3598-3600)CCA>CTA	p.P1200L	PTPRZ1_uc003vjz.2_Intron|PTPRZ1_uc011knt.1_Intron	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	1200	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						ACTGTTCTTCCAGCTGTGCCC	0.378													108	82					0	0	0.00361006	0	0
CADPS2	93664	broad.mit.edu	37	7	122114448	122114448	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:122114448G>A	uc010lkp.2	-	12	2148	c.1985C>T	c.(1984-1986)TCC>TTC	p.S662F	CADPS2_uc011knx.1_Missense_Mutation_p.S33F|CADPS2_uc003vkg.3_Missense_Mutation_p.S359F|CADPS2_uc010lkq.2_Missense_Mutation_p.S659F	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	662					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						GCAAGAATAGGAATCATTCAG	0.378													19	65					0	0	0.00152264	0	0
ASB15	142685	broad.mit.edu	37	7	123257713	123257713	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:123257713G>A	uc003vku.1	+	7	665	c.373G>A	c.(373-375)GAA>AAA	p.E125K	ASB15_uc003vkv.1_Missense_Mutation_p.E125K|ASB15_uc003vkw.1_Missense_Mutation_p.E125K	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	125	ANK 1.				intracellular signal transduction					skin(2)|lung(1)	3						TGGTCTGGTGGAAAATGTAAG	0.408													25	73					0	0	0.00395357	0	0
SPAM1	6677	broad.mit.edu	37	7	123595075	123595075	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:123595075G>A	uc003vld.2	+	5	1381	c.979G>A	c.(979-981)GAA>AAA	p.E327K	SPAM1_uc003vle.2_Missense_Mutation_p.E327K|SPAM1_uc011koa.1_5'UTR|SPAM1_uc003vlf.3_Missense_Mutation_p.E327K|SPAM1_uc010lku.2_Missense_Mutation_p.E327K	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	327					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	TACATTTGGCGAAACTGTTGC	0.373													27	22					0	0	0.000878237	0	0
CALU	813	broad.mit.edu	37	7	128407644	128407644	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:128407644C>T	uc003vns.2	+	6	930	c.778C>T	c.(778-780)CCC>TCC	p.P260S	CALU_uc003vnq.2_Missense_Mutation_p.P260S|CALU_uc003vnr.2_Missense_Mutation_p.P260S	NM_001130674	NP_001124146	O43852	CALU_HUMAN	calumenin isoform b precursor	260	EF-hand 5.				platelet activation|platelet degranulation	extracellular region|Golgi apparatus|melanosome|sarcoplasmic reticulum lumen	calcium ion binding|protein binding				0						CTGGATCCTTCCCTCAGACTA	0.502													47	15					0	0	0.00361006	0	0
FLNC	2318	broad.mit.edu	37	7	128494728	128494728	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:128494728G>A	uc003vnz.3	+	41	7198	c.6989G>A	c.(6988-6990)GGC>GAC	p.G2330D	FLNC_uc003voa.3_Missense_Mutation_p.G2297D	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2330	Filamin 21.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GGTGTGGCCGGCGTGCCAGGT	0.672													8	19					0	0	0.00307968	0	0
PLXNA4	91584	broad.mit.edu	37	7	131831286	131831286	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:131831286G>A	uc003vra.3	-	28	5267	c.5038C>T	c.(5038-5040)CGA>TGA	p.R1680*	PLXNA4_uc003vqz.3_5'Flank	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1680	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						GCCAGGAGTCGGGTCAGGTAG	0.567													84	236					0	0	0.00361006	0	0
DGKI	9162	broad.mit.edu	37	7	137531208	137531208	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:137531208C>T	uc003vtt.2	-	1	402	c.401G>A	c.(400-402)AGG>AAG	p.R134K	DGKI_uc003vtu.2_5'UTR	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	134					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						CCGCACCTACCTGTACGAGAC	0.652													7	42					0	0	0.000274275	0	0
OR9A4	130075	broad.mit.edu	37	7	141618715	141618715	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:141618715C>T	uc003vwu.1	+	1	40	c.40C>T	c.(40-42)CTT>TTT	p.L14F		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					ATTTTATCTCCTTGGCTTCCC	0.378													88	137					0	0	0.00361006	0	0
TAS2R38	5726	broad.mit.edu	37	7	141672962	141672962	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:141672962C>T	uc003vwx.1	-	1	612	c.528G>A	c.(526-528)ATG>ATA	p.M176I		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	176	Extracellular (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					TATTGTTATTCATGAATAGCA	0.408													13	67					0	0	0.00244969	0	0
MGAM	8972	broad.mit.edu	37	7	141759342	141759342	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:141759342G>A	uc003vwy.2	+	32	3944	c.3890G>A	c.(3889-3891)GGG>GAG	p.G1297E		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1297	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AAGTTTGCTGGGTTTCCAGCT	0.557													55	33					0	0	0.00361006	0	0
MGAM	8972	broad.mit.edu	37	7	141799458	141799458	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:141799458C>T	uc003vwy.2	+	44	5161	c.5107C>T	c.(5107-5109)CCT>TCT	p.P1703S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1703	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CTTGCCAGCCCCTCTTGACCA	0.527													28	60					0	0	0.00127121	0	0
PRSS1	5644	broad.mit.edu	37	7	142459713	142459713	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:142459713C>T	uc003wak.2	+	3	306	c.289C>T	c.(289-291)CCC>TCC	p.P97S	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_3'UTR|PRSS1_uc003wam.2_Missense_Mutation_p.P37S	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	97	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			CATCCGCCACCCCCAATACGA	0.542									Hereditary_Pancreatitis				112	53					0	0	0.00361006	0	0
PRSS1	5644	broad.mit.edu	37	7	142459835	142459835	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:142459835G>A	uc003wak.2	+	3	428	c.411G>A	c.(409-411)ACG>ACA	p.T137T	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_3'UTR|PRSS1_uc003wam.2_Silent_p.T77T	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	137	Peptidase S1.		T -> M (in a colorectal cancer sample; somatic mutation).		digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity	p.T137M(1)		large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			CCACTGGCACGAAGTGCCTCA	0.552									Hereditary_Pancreatitis				26	85					0	0	0.000720815	0	0
PRSS1	5644	broad.mit.edu	37	7	142460770	142460771	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:142460770_142460771TC>GT	uc003wak.2	+	5	660_661	c.643_644TC>GT	c.(643-645)TCC>GTC	p.S215V	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc003wam.2_Missense_Mutation_p.S155V	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	215	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			AGGAGTTGTCTCCTGGGGTGAT	0.5									Hereditary_Pancreatitis				19	98					0	0	6.4e-05	0	0
TRPV6	55503	broad.mit.edu	37	7	142570143	142570143	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:142570143C>T	uc003wbx.1	-	14	2093	c.1877G>A	c.(1876-1878)GGA>GAA	p.G626E	TRPV6_uc003wbw.1_Missense_Mutation_p.G412E|TRPV6_uc010lou.1_Missense_Mutation_p.G497E	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	626	Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					CCAGCGGTCTCCCAGGCCATA	0.647													14	15					0	0	0.00244969	0	0
TRPV6	55503	broad.mit.edu	37	7	142575033	142575033	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:142575033C>T	uc003wbx.1	-	4	566	c.350_splice	c.e4-1	p.G117_splice	TRPV6_uc003wbw.1_5'Flank|TRPV6_uc010lou.1_5'UTR	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,						regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					GCAGTCTGACCTGGCCCAGAG	0.627													16	67					0	0	0.00074312	0	0
KEL	3792	broad.mit.edu	37	7	142650939	142650939	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:142650939C>T	uc003wcb.2	-	9	1239	c.1029G>A	c.(1027-1029)TTG>TTA	p.L343L		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	343	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					ACATGTTTTTCAAATATTCCA	0.557													57	229					0	0	0.00361006	0	0
TMEM139	135932	broad.mit.edu	37	7	142983219	142983219	+	Missense_Mutation	SNP	C	T	T	rs143413842		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:142983219C>T	uc010lov.2	+	3	308	c.169C>T	c.(169-171)CGG>TGG	p.R57W	CASP2_uc003wco.2_5'Flank|CASP2_uc003wcp.2_5'Flank|CASP2_uc011kta.1_5'Flank|TMEM139_uc003wck.3_Missense_Mutation_p.R57W|TMEM139_uc003wcl.2_Missense_Mutation_p.R57W|TMEM139_uc003wcm.2_Missense_Mutation_p.R57W|TMEM139_uc003wcn.2_Intron	NM_153345	NP_699176	Q8IV31	TM139_HUMAN	transmembrane protein 139 precursor	57	Cytoplasmic (Potential).					integral to membrane					0	Melanoma(164;0.059)					TCTCCTGGTCCGGTTTCTGGA	0.547													23	91					0	0	0.00188189	0	0
TAS2R60	338398	broad.mit.edu	37	7	143141207	143141207	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:143141207G>A	uc011ktg.1	+	1	662	c.662G>A	c.(661-663)GGA>GAA	p.G221E	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	221	Cytoplasmic (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					ACATCTCTGGGAAGACACAGG	0.458													47	74					0	0	0.00361006	0	0
Unknown	0	broad.mit.edu	37	7	143510097	143510098	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:143510097_143510098GG>TA	uc011ktn.1	+	4	1768_1769	c.1754_1755GG>TA	c.(1753-1755)AGG>ATA	p.R585I	uc011kto.1_RNA|uc011ktp.1_Intron|LOC154761_uc011ktq.1_Intron|LOC154761_uc011ktr.1_Intron|LOC154761_uc011kts.1_Intron|LOC154761_uc003wdj.1_Intron|LOC154761_uc003wdl.2_3'UTR|LOC154761_uc003wdm.2_3'UTR	NM_001130026	NP_001123498			hypothetical protein LOC285966 isoform B																		ACCAAGGCCAGGAAGCTATCTC	0.559													6	41					0	0	6.4e-05	0	0
OR2F1	26211	broad.mit.edu	37	7	143657257	143657257	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:143657257A>C	uc003wds.1	+	1	238	c.194A>C	c.(193-195)AAC>ACC	p.N65T		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	65	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					TTTCTCACCAACCTCTCCCTT	0.502													42	182					0	0	0.00361006	0	0
OR6B1	135946	broad.mit.edu	37	7	143701136	143701136	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:143701136G>A	uc003wdt.1	+	1	47	c.47G>A	c.(46-48)GGA>GAA	p.G16E		NM_001005281	NP_001005281	O95007	OR6B1_HUMAN	olfactory receptor, family 6, subfamily B,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.0783)					ATTCTGGTGGGATTCCCTGGG	0.478													15	37					0	0	0.00316338	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146818223	146818223	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:146818223G>A	uc003weu.1	+	6	1423	c.907G>A	c.(907-909)GGA>AGA	p.G303R		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	303	Laminin G-like 1.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CCGTACCAATGGAGAGTTTGA	0.473										HNSCC(39;0.1)			15	71					0	0	0.000566183	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147336230	147336230	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:147336230T>G	uc003weu.1	+	13	2446	c.1930T>G	c.(1930-1932)TTG>GTG	p.L644V		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	644	Extracellular (Potential).|Fibrinogen C-terminal.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GTCTCATGACTTGCAGATGCA	0.478										HNSCC(39;0.1)			29	111					0	0	0.00327116	0	0
ZNF425	155054	broad.mit.edu	37	7	148801022	148801022	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:148801022G>A	uc003wfj.2	-	4	2014	c.1941C>T	c.(1939-1941)TTC>TTT	p.F647F		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	647	C2H2-type 16.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			ACTGTTGAGTGAAACTTTTGC	0.537													39	143					0	0	0.0025221	0	0
KRBA1	84626	broad.mit.edu	37	7	149422475	149422475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:149422475C>T	uc003wfz.2	+	10	1595	c.1196C>T	c.(1195-1197)TCG>TTG	p.S399L	KRBA1_uc010lpj.2_RNA|KRBA1_uc003wga.2_RNA|KRBA1_uc003wgb.2_Missense_Mutation_p.S67L	NM_032534	NP_115923	A5PL33	KRBA1_HUMAN	KRAB A domain containing 1	399										ovary(1)|central_nervous_system(1)	2	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CCAAATGGGTCGTCACCTTCC	0.582													11	11					0	0	0.000978159	0	0
GIMAP7	168537	broad.mit.edu	37	7	150217444	150217444	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:150217444G>A	uc003whk.2	+	2	512	c.382G>A	c.(382-384)GTC>ATC	p.V128I		NM_153236	NP_694968	Q8NHV1	GIMA7_HUMAN	GTPase, IMAP family member 7	128							GTP binding			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAAGCACATGGTCATCTTGTT	0.512													16	58					0	0	0.00121646	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325121	150325121	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:150325121C>T	uc003whn.2	-	3	989	c.565G>A	c.(565-567)GAT>AAT	p.D189N	GIMAP6_uc003whm.2_Missense_Mutation_p.D109N	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	189							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGGGTCACATCCAGCCAGGCA	0.607													38	210					0	0	0.00111076	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325271	150325271	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:150325271C>T	uc003whn.2	-	3	839	c.415G>A	c.(415-417)GAT>AAT	p.D139N	GIMAP6_uc003whm.2_Missense_Mutation_p.D59N	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	139							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ACCTGCTGATCCTCATCCGTG	0.642													48	67					0	0	0.00361006	0	0
GIMAP2	26157	broad.mit.edu	37	7	150389992	150389992	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:150389992G>A	uc003who.2	+	3	706	c.618G>A	c.(616-618)TTG>TTA	p.L206L	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	206						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGGATCTGTTGATGGAGAAAA	0.438													14	69					0	0	0.00316338	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439873	150439873	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:150439873G>A	uc003whr.1	+	3	998	c.646G>A	c.(646-648)GGC>AGC	p.G216S	GIMAP5_uc010lpu.2_Missense_Mutation_p.G74S	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	216	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGAGCGAGAGGGCTCCTTCCA	0.592													20	59					0	0	0.00152264	0	0
TMEM176B	28959	broad.mit.edu	37	7	150491073	150491073	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:150491073G>A	uc003wht.3	-	3	457	c.291C>T	c.(289-291)GGC>GGT	p.G97G	TMEM176B_uc003whu.3_Silent_p.G97G|TMEM176B_uc003whv.3_Intron|TMEM176B_uc003whw.3_Silent_p.G97G	NM_001101313	NP_001094783	Q3YBM2	T176B_HUMAN	transmembrane protein 176B isoform a	97	Helical; (Potential).				cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGAAGGCACAGCCTGAGGCAC	0.567													27	124					0	0	0.00127121	0	0
TMEM176B	28959	broad.mit.edu	37	7	150493629	150493629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:150493629C>T	uc003wht.3	-	2	195	c.29G>A	c.(28-30)GGA>GAA	p.G10E	TMEM176B_uc003whu.3_Missense_Mutation_p.G10E|TMEM176B_uc003whv.3_Missense_Mutation_p.G10E|TMEM176B_uc003whw.3_Missense_Mutation_p.G10E	NM_001101313	NP_001094783	Q3YBM2	T176B_HUMAN	transmembrane protein 176B isoform a	10					cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CATAGCAACTCCATTCACAAT	0.537													54	38					0	0	0.00361006	0	0
ABP1	26	broad.mit.edu	37	7	150558147	150558147	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:150558147C>T	uc003why.1	+	6	6324	c.2106C>T	c.(2104-2106)TTC>TTT	p.F702F	ABP1_uc003whz.1_Silent_p.F702F|ABP1_uc003wia.1_Silent_p.F721F	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	702					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	TCAACTTCTTCCCAGAGGACC	0.617													22	44					0	0	0.00278032	0	0
ACCN3	9311	broad.mit.edu	37	7	150749682	150749682	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:150749682C>T	uc003win.2	+	11	1907	c.1539C>T	c.(1537-1539)GCC>GCT	p.A513A	ACCN3_uc003wio.2_Missense_Mutation_p.P520L|ACCN3_uc003wip.2_Missense_Mutation_p.R494C|ACCN3_uc003wiq.2_RNA	NM_004769	NP_004760	Q9UHC3	ACCN3_HUMAN	amiloride-sensitive cation channel 3 isoform a	513	Cytoplasmic (Potential).				sensory perception|signal transduction	cytoplasm|integral to plasma membrane	ligand-gated sodium channel activity			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CTCCCTGTGCCGTCACCAAGA	0.632													30	64					0	0	0.00127121	0	0
ASB10	136371	broad.mit.edu	37	7	150883911	150883911	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:150883911G>A	uc003wjm.1	-	1	568	c.442C>T	c.(442-444)CGT>TGT	p.R148C	ASB10_uc003wjl.1_Missense_Mutation_p.R148C|ASB10_uc003wjn.1_Intron	NM_001142459	NP_001135931	Q8WXI3	ASB10_HUMAN	ankyrin repeat and SOCS box-containing 10	103					intracellular signal transduction						0			OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CTCAGAGCACGGATGTTGAAG	0.632													8	16					0	0	0.000274275	0	0
MLL3	58508	broad.mit.edu	37	7	151884350	151884350	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:151884350G>A	uc003wla.2	-	33	5224	c.5005C>T	c.(5005-5007)CCT>TCT	p.P1669S	MLL3_uc003wkz.2_Missense_Mutation_p.P730S	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	1669					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GGCTTACCAGGGAATTCTTCC	0.368			N		medulloblastoma								14	78					0	0	0.00400662	0	0
PAXIP1	22976	broad.mit.edu	37	7	154738110	154738110	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:154738110C>T	uc003wlp.2	-	20	3202	c.3159G>A	c.(3157-3159)CTG>CTA	p.L1053L	LOC100132707_uc011kvr.1_RNA|LOC100132707_uc003wlo.2_RNA|PAXIP1_uc003wlq.1_Silent_p.L1019L|PAXIP1_uc011kvs.1_Silent_p.L1017L	NM_007349	NP_031375	Q6ZW49	PAXI1_HUMAN	PAX interacting protein 1	1053	Interaction with TP53BP1.|BRCT 6.				DNA damage response, signal transduction by p53 class mediator|DNA recombination|DNA repair|histone H3-K4 methylation|positive regulation of histone acetylation|positive regulation of histone H3-K36 methylation|positive regulation of histone H3-K4 methylation|positive regulation of isotype switching|positive regulation of protein ubiquitination|positive regulation of transcription initiation from RNA polymerase II promoter|response to ionizing radiation|transcription, DNA-dependent	histone methyltransferase complex|nuclear matrix				lung(2)|ovary(1)|breast(1)|pancreas(1)	5	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0296)	UCEC - Uterine corpus endometrioid carcinoma (81;0.178)		GCACTCCAGTCAGAACGAACT	0.428													32	159					0	0	0.00148497	0	0
LMBR1	64327	broad.mit.edu	37	7	156619310	156619310	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:156619310G>A	uc003wmw.3	-	4	523	c.308C>T	c.(307-309)TCC>TTC	p.S103F	LMBR1_uc003wmx.3_5'UTR|LMBR1_uc010lqn.2_Missense_Mutation_p.S103F|LMBR1_uc011kvx.1_Missense_Mutation_p.S82F|LMBR1_uc010lqo.2_RNA	NM_022458	NP_071903	Q8WVP7	LMBR1_HUMAN	limb region 1 protein	103	Extracellular (Potential).					integral to membrane	receptor activity				0	Ovarian(565;0.218)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00231)	UCEC - Uterine corpus endometrioid carcinoma (81;0.208)		ATGAATCAGGGAGCCATTTAG	0.323													3	8					0	0	6.4e-05	0	0
PTPRN2	5799	broad.mit.edu	37	7	157959969	157959969	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:157959969G>A	uc003wno.2	-	6	685	c.564C>T	c.(562-564)TTC>TTT	p.F188F	PTPRN2_uc003wnp.2_Silent_p.F171F|PTPRN2_uc003wnq.2_Silent_p.F188F|PTPRN2_uc003wnr.2_Silent_p.F150F|PTPRN2_uc011kwa.1_Silent_p.F211F	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	188	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		TGCTCTCGGAGAAGCGGTCAT	0.607													25	86					0	0	0.00209593	0	0
VIPR2	7434	broad.mit.edu	37	7	158829503	158829503	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:158829503G>A	uc003woh.2	-	7	874	c.688C>T	c.(688-690)CTC>TTC	p.L230F	VIPR2_uc010lqx.2_RNA|VIPR2_uc010lqy.2_RNA	NM_003382	NP_003373	P41587	VIPR2_HUMAN	vasoactive intestinal peptide receptor 2	230	Cytoplasmic (Potential).				cell-cell signaling	integral to plasma membrane				lung(1)|central_nervous_system(1)	2	Ovarian(565;0.152)	all_cancers(7;1.13e-11)|all_epithelial(9;0.000545)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00231)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)|STAD - Stomach adenocarcinoma(7;0.18)		GCCACCAGGAGGGTGTGGAGG	0.607													4	56					0	0	0.000602214	0	0
MYOM2	9172	broad.mit.edu	37	8	2056620	2056620	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:2056620C>T	uc003wpx.3	+	24	3180	c.3042C>T	c.(3040-3042)CCC>CCT	p.P1014P	MYOM2_uc011kwi.1_Silent_p.P439P	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	1014					muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		TAAAGAACCCCAGTAAGTAAG	0.468													53	48					0	0	0.00361006	0	0
CSMD1	64478	broad.mit.edu	37	8	3076893	3076893	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:3076893C>T	uc011kwk.1	-	29	4949	c.4559G>A	c.(4558-4560)GGG>GAG	p.G1520E	CSMD1_uc011kwj.1_Missense_Mutation_p.G912E|CSMD1_uc003wqe.2_Missense_Mutation_p.G676E	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1520	Extracellular (Potential).|CUB 9.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CTGGTAACTCCCAATGAGGGG	0.478													15	7					0	0	0.000566183	0	0
CSMD1	64478	broad.mit.edu	37	8	3216769	3216769	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:3216769G>A	uc011kwk.1	-	21	3602	c.3212C>T	c.(3211-3213)TCC>TTC	p.S1071F	CSMD1_uc011kwj.1_Missense_Mutation_p.S463F|CSMD1_uc003wqe.2_Missense_Mutation_p.S227F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1071	Sushi 6.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CAGGAAGCAGGAAAACGTCAG	0.557													35	107					0	0	0.00375469	0	0
DEFA4	1669	broad.mit.edu	37	8	6793604	6793604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:6793604G>A	uc003wqu.1	-	3	283	c.232C>T	c.(232-234)CGT>TGT	p.R78C		NM_001925	NP_001916	P12838	DEF4_HUMAN	defensin, alpha 4 preproprotein	78					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space				large_intestine(1)	1				COAD - Colon adenocarcinoma(149;0.0572)|READ - Rectum adenocarcinoma(644;0.121)		TTCCCAACACGAAGTTCTGTT	0.507													35	49					0	0	0.00128727	0	0
SGK223	157285	broad.mit.edu	37	8	8234125	8234125	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:8234125C>T	uc003wsh.3	-	2	1794	c.1794G>A	c.(1792-1794)CGG>CGA	p.R598R		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	598							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						CACCGTTGGTCCGGCAGGAAG	0.662													40	16					0	0	0.00361006	0	0
XKR6	286046	broad.mit.edu	37	8	10756373	10756373	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:10756373G>A	uc003wtk.1	-	3	1042	c.1015C>T	c.(1015-1017)CAC>TAC	p.H339Y		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	339						integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		AGCAGCTTGTGATAGGAGGCT	0.557													41	96					0	0	0.00148497	0	0
PCM1	5108	broad.mit.edu	37	8	17822259	17822259	+	Missense_Mutation	SNP	G	A	A	rs35353404		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:17822259G>A	uc003wyi.3	+	18	3259	c.2837G>A	c.(2836-2838)GGA>GAA	p.G946E	PCM1_uc011kyh.1_Missense_Mutation_p.G946E|PCM1_uc003wyj.3_Missense_Mutation_p.G947E	NM_006197	NP_006188	Q15154	PCM1_HUMAN	pericentriolar material 1	946				G -> R (in Ref. 1; AAA60120).	centrosome organization|cilium assembly|G2/M transition of mitotic cell cycle|interkinetic nuclear migration|microtubule anchoring|negative regulation of neurogenesis|protein localization to centrosome	centriolar satellite|cytosol|nuclear membrane|pericentriolar material	identical protein binding		PCM1/JAK2(30)	haematopoietic_and_lymphoid_tissue(30)|breast(4)|ovary(2)	36				Colorectal(111;0.0789)		TCCTACAATGGAAAGGAAACT	0.294			T	RET|JAK2	papillary thyroid|CML|MPD								22	28					0	0	0.00278032	0	0
TNFRSF10D	8793	broad.mit.edu	37	8	23003225	23003225	+	Missense_Mutation	SNP	G	A	A	rs115978162	byFrequency	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:23003225G>A	uc003xcz.1	-	5	784	c.692C>T	c.(691-693)TCA>TTA	p.S231L		NM_003840	NP_003831	Q9UBN6	TR10D_HUMAN	tumor necrosis factor receptor superfamily,	231	Helical; (Potential).				anti-apoptosis|apoptosis	integral to membrane	TRAIL binding|transmembrane receptor activity				0		Prostate(55;0.0421)|Breast(100;0.067)		Colorectal(74;0.0147)|COAD - Colon adenocarcinoma(73;0.0612)		CTTCCGACATGAAAAGCCAAC	0.512													15	20					0	0	0.00316338	0	0
ADAM28	10863	broad.mit.edu	37	8	24201093	24201093	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:24201093C>T	uc003xdy.2	+	18	2069	c.1986C>T	c.(1984-1986)GTC>GTT	p.V662V	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Silent_p.V349V	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	662	Extracellular (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		CCTCAGTGGTCTTCCGTAGGT	0.448													7	11					0	0	0.00198382	0	0
NEFL	4747	broad.mit.edu	37	8	24813201	24813201	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:24813201C>T	uc003xee.2	-	1	931	c.829G>A	c.(829-831)GAG>AAG	p.E277K		NM_006158	NP_006149	P07196	NFL_HUMAN	neurofilament, light polypeptide 68kDa	277	Rod.|Linker 2.				anterograde axon cargo transport|axon transport of mitochondrion|neurofilament bundle assembly|retrograde axon cargo transport|synaptic transmission	cytosol|neurofilament	identical protein binding|protein C-terminus binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.00965)|Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		AACCATTCCTCAGCGTTCTGC	0.652													17	19					0	0	0.000566183	0	0
ELP3	55140	broad.mit.edu	37	8	28017872	28017872	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:28017872C>T	uc003xgo.3	+	13	1532	c.1384C>T	c.(1384-1386)CGT>TGT	p.R462C	ELP3_uc003xgn.3_Missense_Mutation_p.R447C|ELP3_uc011laq.1_Missense_Mutation_p.R390C|ELP3_uc011lar.1_Missense_Mutation_p.R370C|ELP3_uc011las.1_Missense_Mutation_p.R343C|ELP3_uc011lat.1_Missense_Mutation_p.R343C	NM_018091	NP_060561	Q9H9T3	ELP3_HUMAN	elongation protein 3 homolog	462	N-acetyltransferase.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|nucleolus|transcription elongation factor complex	histone acetyltransferase activity|iron-sulfur cluster binding|metal ion binding|phosphorylase kinase regulator activity|protein binding				0		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.127)|Kidney(114;0.151)|Colorectal(74;0.183)		AGAAACTTTCCGTTTCGAATT	0.473													13	18					0	0	0.00185496	0	0
FUT10	84750	broad.mit.edu	37	8	33247208	33247208	+	Missense_Mutation	SNP	G	A	A	rs149780215		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:33247208G>A	uc003xje.2	-	4	841	c.485C>T	c.(484-486)CCA>CTA	p.P162L	FUT10_uc003xjc.2_Missense_Mutation_p.P169L|FUT10_uc003xjd.2_Missense_Mutation_p.P134L|FUT10_uc011lbi.1_Missense_Mutation_p.P212L|FUT10_uc003xjf.2_Missense_Mutation_p.P100L|FUT10_uc003xjg.2_Missense_Mutation_p.P134L|FUT10_uc003xjh.2_Missense_Mutation_p.P162L	NM_032664	NP_116053	Q6P4F1	FUT10_HUMAN	fucosyltransferase 10	162	Lumenal (Potential).				embryo development|fertilization|hemopoiesis|L-fucose catabolic process|nervous system development|protein folding|protein glycosylation|protein targeting|wound healing	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			ovary(1)|pancreas(1)	2				KIRC - Kidney renal clear cell carcinoma(67;0.129)|Kidney(114;0.154)		GGTGATCACTGGTTTATGAAA	0.443													30	27					0	0	0.00127121	0	0
FGFR1	2260	broad.mit.edu	37	8	38287320	38287320	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:38287320G>A	uc003xlp.2	-	3	1180	c.238C>T	c.(238-240)CGC>TGC	p.R80C	FGFR1_uc011lbo.1_Missense_Mutation_p.R80C|FGFR1_uc011lbp.1_Intron|FGFR1_uc011lbq.1_Intron|FGFR1_uc010lwk.2_Missense_Mutation_p.R72C|FGFR1_uc011lbr.1_5'Flank|FGFR1_uc011lbs.1_Intron|FGFR1_uc011lbt.1_Intron|FGFR1_uc011lbu.1_Missense_Mutation_p.R113C|FGFR1_uc011lbv.1_Missense_Mutation_p.R80C|FGFR1_uc011lbw.1_Intron|FGFR1_uc011lbx.1_Intron|FGFR1_uc003xlv.2_Intron|FGFR1_uc003xlu.2_Intron|FGFR1_uc003xlw.1_RNA	NM_023110	NP_075598	P11362	FGFR1_HUMAN	fibroblast growth factor receptor 1 isoform 1	80	Extracellular (Potential).|Ig-like C2-type 1.				axon guidance|cell growth|insulin receptor signaling pathway|MAPKKK cascade|positive regulation of cell proliferation|skeletal system development	extracellular region|integral to plasma membrane|membrane fraction	ATP binding|fibroblast growth factor receptor activity|heparin binding|protein homodimerization activity			lung(5)|central_nervous_system(5)|stomach(2)|breast(2)|ovary(1)	15	all_cancers(2;9.05e-47)|all_epithelial(2;2.64e-50)|all_lung(3;1.71e-23)|Lung NSC(2;3.61e-23)|Colorectal(12;0.000442)	Breast(189;1.48e-05)|all_lung(54;0.00354)|Lung NSC(58;0.0138)|Hepatocellular(245;0.065)	Epithelial(3;3.96e-34)|all cancers(3;3.06e-30)|BRCA - Breast invasive adenocarcinoma(5;2.28e-21)|COAD - Colon adenocarcinoma(9;0.24)		Palifermin(DB00039)	CCTGTGATGCGGGTGCGGTTG	0.667		1	T	BCR|FOP|ZNF198|CEP1	MPD|NHL		Pfeiffer syndrome|Kallman syndrome						5	10					0	0	0.00116845	0	0
ADAM9	8754	broad.mit.edu	37	8	38913098	38913098	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:38913098C>T	uc003xmr.2	+	14	1476	c.1398C>T	c.(1396-1398)TTC>TTT	p.F466F	ADAM9_uc011lcf.1_RNA|ADAM9_uc011lcg.1_RNA|ADAM9_uc010lwr.2_RNA|ADAM9_uc003xms.2_RNA	NM_003816	NP_003807	Q13443	ADAM9_HUMAN	ADAM metallopeptidase domain 9 isoform 1	466	Extracellular (Potential).|Disintegrin.				activation of MAPKK activity|cell-cell adhesion mediated by integrin|cell-matrix adhesion|keratinocyte differentiation|monocyte activation|PMA-inducible membrane protein ectodomain proteolysis|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell adhesion mediated by integrin|positive regulation of keratinocyte migration|positive regulation of macrophage fusion|positive regulation of membrane protein ectodomain proteolysis|positive regulation of protein secretion|response to calcium ion|response to glucocorticoid stimulus|response to hydrogen peroxide|response to manganese ion|response to tumor necrosis factor|transforming growth factor beta receptor signaling pathway	extracellular space|extracellular space|integral to membrane|intrinsic to external side of plasma membrane	collagen binding|integrin binding|laminin binding|metalloendopeptidase activity|protein kinase C binding|SH3 domain binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_lung(54;0.00292)|Lung NSC(58;0.0115)|Hepatocellular(245;0.0153)	LUSC - Lung squamous cell carcinoma(45;2.74e-07)			TTCACTAGTTCCTTCCAGGAG	0.358													14	21					0	0	0.00316338	0	0
CHRNB3	1142	broad.mit.edu	37	8	42586888	42586888	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:42586888C>T	uc003xpi.1	+	5	566	c.438C>T	c.(436-438)CCC>CCT	p.P146P		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	146	Extracellular (Potential).				synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			GGACCCCTCCCGCCAGCTACA	0.532													18	17					0	0	0.00121646	0	0
CHRNB3	1142	broad.mit.edu	37	8	42591761	42591761	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:42591761G>A	uc003xpi.1	+	6	1505	c.1377G>A	c.(1375-1377)TAG>TAA	p.*459*		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	459					synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			GTTACCATTAGGAATTTAAAA	0.413													37	52					0	0	0.00170553	0	0
HGSNAT	138050	broad.mit.edu	37	8	43048908	43048908	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:43048908C>T	uc003xpx.3	+	14	1434	c.1386C>T	c.(1384-1386)TAC>TAT	p.Y462Y		NM_152419	NP_689632	Q68CP4	HGNAT_HUMAN	heparan-alpha-glucosaminide N-acetyltransferase	490	Lumenal, vesicle (Potential).				lysosomal transport|protein oligomerization	integral to membrane|lysosomal membrane	heparan-alpha-glucosaminide N-acetyltransferase activity				0	Prostate(17;0.0119)|Ovarian(28;0.0172)|Lung SC(25;0.184)	all_cancers(86;0.000223)|all_epithelial(80;1.61e-07)|all_lung(54;0.00021)|Lung NSC(58;0.000778)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.0777)|LUSC - Lung squamous cell carcinoma(45;0.17)			AGGTACTTTACCACACCGAGG	0.463													17	29					0	0	0.000958276	0	0
PXDNL	137902	broad.mit.edu	37	8	52384783	52384783	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:52384783C>T	uc003xqu.3	-	8	877	c.776G>A	c.(775-777)GGA>GAA	p.G259E		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	259	Ig-like C2-type 1.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				TTTGGGGTTTCCTTCCGCCCG	0.443													19	78					0	0	0.00188189	0	0
OPRK1	4986	broad.mit.edu	37	8	54163366	54163366	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:54163366A>G	uc003xrh.1	-	1	607	c.232T>C	c.(232-234)TCG>CCG	p.S78P	OPRK1_uc003xri.1_Missense_Mutation_p.S78P|OPRK1_uc010lyc.1_5'UTR	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	78	Helical; Name=1; (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	ATGACCAGCGAGTTGCCCACC	0.692													4	21					0	0	0.00024832	0	0
RP1	6101	broad.mit.edu	37	8	55540730	55540730	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:55540730G>A	uc003xsd.1	+	4	4436	c.4288G>A	c.(4288-4290)GAT>AAT	p.D1430N	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1430					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GAAGTTTCAGGATGAAAATGC	0.373													14	32					0	0	0.00244969	0	0
UBXN2B	137886	broad.mit.edu	37	8	59352256	59352256	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:59352256C>T	uc003xtl.2	+	6	720	c.598C>T	c.(598-600)CAT>TAT	p.H200Y		NM_001077619	NP_001071087	Q14CS0	UBX2B_HUMAN	UBX domain protein 2B	200	SEP.					cytosol|endoplasmic reticulum|Golgi apparatus|nucleus				ovary(2)	2						TATGGAGGATCATCAGGATCA	0.383													27	55					0	0	0.000878237	0	0
CYP7A1	1581	broad.mit.edu	37	8	59409675	59409675	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:59409675G>A	uc003xtm.3	-	3	459	c.396C>T	c.(394-396)ACC>ACT	p.T132T		NM_000780	NP_000771	P22680	CP7A1_HUMAN	cytochrome P450, family 7, subfamily A,	132					bile acid biosynthetic process|cellular lipid metabolic process|cellular response to cholesterol|cellular response to glucose stimulus|cholesterol catabolic process|cholesterol homeostasis|regulation of bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	cholesterol 7-alpha-monooxygenase activity|electron carrier activity|heme binding			ovary(1)	1		all_lung(136;0.0271)|Lung NSC(129;0.0351)|all_epithelial(80;0.0554)				GGCCCTGCAGGGTTTTGATGA	0.458									Neonatal_Giant_Cell_Hepatitis				28	56					0	0	0.000878237	0	0
CA8	767	broad.mit.edu	37	8	61135273	61135273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:61135273G>A	uc003xtz.1	-	7	921	c.673C>T	c.(673-675)CCA>TCA	p.P225S	CA8_uc003xua.1_Missense_Mutation_p.P225S	NM_004056	NP_004047	P35219	CAH8_HUMAN	carbonic anhydrase VIII	225					one-carbon metabolic process		carbonate dehydratase activity|zinc ion binding				0		all_cancers(86;0.172)|all_epithelial(80;0.0383)|all_lung(136;0.0413)|Lung NSC(129;0.0474)				CTGCAAGGTGGGATGGTGAGA	0.458													41	26					0	0	0.0025221	0	0
CHD7	55636	broad.mit.edu	37	8	61735282	61735282	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:61735282G>A	uc003xue.2	+	12	3655	c.3178G>A	c.(3178-3180)GAA>AAA	p.E1060K	CHD7_uc003xuf.2_Missense_Mutation_p.E173K	NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	1060	Helicase ATP-binding.				central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			TCAGTTGTATGAAATGTACTT	0.418													28	55					0	0	0.001512	0	0
CLVS1	157807	broad.mit.edu	37	8	62212699	62212699	+	Silent	SNP	C	T	T	rs149356822		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:62212699C>T	uc003xuh.2	+	2	637	c.313C>T	c.(313-315)CTG>TTG	p.L105L	CLVS1_uc003xug.2_Silent_p.L105L|CLVS1_uc003xui.2_Intron|CLVS1_uc010lyp.2_Silent_p.L105L	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	105					lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						CCAGCTAAACCTGGACATGTT	0.517													9	18					0	0	0.000274275	0	0
BHLHE22	27319	broad.mit.edu	37	8	65493401	65493401	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:65493401C>T	uc003xvi.2	+	1	588	c.54C>T	c.(52-54)TTC>TTT	p.F18F	LOC401463_uc003xvh.2_Intron	NM_152414	NP_689627	Q8NFJ8	BHE22_HUMAN	basic helix-loop-helix domain containing, class	18					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						ACGACCTCTTCCTGCACAAGA	0.667													9	6					0	0	0.000673444	0	0
CYP7B1	9420	broad.mit.edu	37	8	65517309	65517309	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:65517309C>T	uc003xvj.2	-	5	1367	c.1163G>A	c.(1162-1164)CGA>CAA	p.R388Q		NM_004820	NP_004811	O75881	CP7B1_HUMAN	cytochrome P450, family 7, subfamily B,	388					bile acid biosynthetic process|cell death|cholesterol metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	25-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(3)	3		all_cancers(86;0.217)|Lung NSC(129;0.0521)|all_lung(136;0.0906)|all_epithelial(80;0.215)				GTCTCCCTTTCGCACACAGTA	0.453													32	47					0	0	0.0024448	0	0
TRIM55	84675	broad.mit.edu	37	8	67062607	67062607	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:67062607G>A	uc003xvv.2	+	7	1117	c.891G>A	c.(889-891)ATG>ATA	p.M297I	TRIM55_uc003xvu.2_Missense_Mutation_p.M297I|TRIM55_uc003xvw.2_Missense_Mutation_p.M297I|TRIM55_uc003xvx.2_Intron	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	297	COS.					cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			CATTTCAGATGGAGAAAATAG	0.378													18	31					0	0	0.000958276	0	0
ADHFE1	137872	broad.mit.edu	37	8	67364250	67364250	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:67364250C>T	uc003xwb.3	+	9	831	c.797C>T	c.(796-798)CCC>CTC	p.P266L	ADHFE1_uc003xwd.3_RNA|ADHFE1_uc003xwc.3_Missense_Mutation_p.P218L|ADHFE1_uc003xwe.3_RNA|ADHFE1_uc003xwf.3_RNA|ADHFE1_uc011les.1_Missense_Mutation_p.P196L|ADHFE1_uc011leq.1_RNA|ADHFE1_uc011ler.1_RNA	NM_144650	NP_653251	Q8IWW8	HOT_HUMAN	alcohol dehydrogenase, iron containing, 1	266					2-oxoglutarate metabolic process|molecular hydrogen transport	mitochondrial matrix	hydroxyacid-oxoacid transhydrogenase activity|metal ion binding			ovary(1)|lung(1)|breast(1)|skin(1)	4		Lung NSC(129;0.197)	Epithelial(68;0.0321)|all cancers(69;0.0751)|BRCA - Breast invasive adenocarcinoma(89;0.0855)|OV - Ovarian serous cystadenocarcinoma(28;0.226)			CCTTCAAATCCCATCACACGG	0.537													16	42					0	0	0.00400662	0	0
C8orf45	157777	broad.mit.edu	37	8	67793138	67793138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:67793138C>T	uc003xwz.3	+	8	935	c.764C>T	c.(763-765)CCA>CTA	p.P255L	C8orf45_uc003xwv.2_Missense_Mutation_p.P255L|C8orf45_uc011lev.1_Missense_Mutation_p.P255L|C8orf45_uc011lew.1_Missense_Mutation_p.P186L|C8orf45_uc011lex.1_Missense_Mutation_p.P13L|C8orf45_uc003xwy.3_Missense_Mutation_p.P255L	NM_173518	NP_775789	Q4G0Z9	CH045_HUMAN	minichromosome maintenance complex	255					DNA replication		ATP binding|DNA binding			ovary(1)	1	Breast(64;0.186)		Epithelial(68;0.00384)|OV - Ovarian serous cystadenocarcinoma(28;0.00913)|all cancers(69;0.0175)|BRCA - Breast invasive adenocarcinoma(89;0.206)			ATTGGAATTCCAACCTGTGTA	0.239													9	25					0	0	0.000442599	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70594480	70594480	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:70594480C>T	uc003xyl.2	-	7	2428	c.1721G>A	c.(1720-1722)GGA>GAA	p.G574E	SLCO5A1_uc010lzb.2_Missense_Mutation_p.G519E|SLCO5A1_uc011lfa.1_RNA|SLCO5A1_uc003xyk.2_Missense_Mutation_p.G574E	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	574	Extracellular (Potential).|Kazal-like.					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			GTATGTAATTCCATCTGATCC	0.433													14	48					0	0	0.000566183	0	0
XKR9	389668	broad.mit.edu	37	8	71646610	71646610	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:71646610G>A	uc003xyq.2	+	5	1607	c.1073G>A	c.(1072-1074)GGA>GAA	p.G358E	XKR9_uc010lze.2_Missense_Mutation_p.G358E|XKR9_uc010lzd.2_Missense_Mutation_p.G226E	NM_001011720	NP_001011720	Q5GH70	XKR9_HUMAN	XK, Kell blood group complex subunit-related	358						integral to membrane				ovary(1)|skin(1)	2	Breast(64;0.0716)		Epithelial(68;0.00301)|all cancers(69;0.0165)|OV - Ovarian serous cystadenocarcinoma(28;0.0524)|BRCA - Breast invasive adenocarcinoma(89;0.166)			GAAATTGATGGAAAACCAGTT	0.279													11	22					0	0	0.00316338	0	0
ZFHX4	79776	broad.mit.edu	37	8	77616557	77616557	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:77616557G>A	uc003yav.2	+	2	621	c.234G>A	c.(232-234)AAG>AAA	p.K78K	ZFHX4_uc003yat.1_Silent_p.K78K|ZFHX4_uc003yau.1_Silent_p.K78K|ZFHX4_uc003yaw.1_Silent_p.K78K	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	78						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CCTCAGCAAAGGAGATACCCT	0.502										HNSCC(33;0.089)			29	89					0	0	0.001512	0	0
ZFHX4	79776	broad.mit.edu	37	8	77618646	77618646	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:77618646G>A	uc003yav.2	+	2	2710	c.2323G>A	c.(2323-2325)GAA>AAA	p.E775K	ZFHX4_uc003yat.1_Missense_Mutation_p.E775K|ZFHX4_uc003yau.1_Missense_Mutation_p.E775K|ZFHX4_uc003yaw.1_Missense_Mutation_p.E775K	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	775	C2H2-type 4; degenerate.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TTGTGATTATGAAACCAATGT	0.507										HNSCC(33;0.089)			9	17					0	0	0.000673444	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766066	77766066	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:77766066G>A	uc003yav.2	+	10	7161	c.6774G>A	c.(6772-6774)CGG>CGA	p.R2258R	ZFHX4_uc003yau.1_Silent_p.R2303R|ZFHX4_uc003yaw.1_Silent_p.R2258R	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2258						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CTAATGAACGGTACATTCGAA	0.383										HNSCC(33;0.089)			31	21					0	0	0.00127121	0	0
CHMP4C	92421	broad.mit.edu	37	8	82670747	82670747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:82670747G>A	uc003ycl.2	+	5	844	c.670G>A	c.(670-672)GAT>AAT	p.D224N		NM_152284	NP_689497	Q96CF2	CHM4C_HUMAN	chromatin modifying protein 4C	224	Intramolecular interaction with N- terminus (By similarity).				cellular membrane organization|endosome transport|protein transport	cytosol|late endosome membrane	protein binding			ovary(2)	2						AGAGGATGATGATATCAAACA	0.318													13	22					0	0	0.00244969	0	0
CA3	761	broad.mit.edu	37	8	86351982	86351982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:86351982G>A	uc003ydj.2	+	2	159	c.76G>A	c.(76-78)GAA>AAA	p.E26K	CA13_uc003ydf.1_RNA|CA3_uc011lfv.1_RNA	NM_005181	NP_005172	P07451	CAH3_HUMAN	carbonic anhydrase III	26					one-carbon metabolic process	cytoplasm	carbonate dehydratase activity|zinc ion binding				0						TGCCAAGGGGGAAAACCAGTC	0.493													19	28					0	0	0.00188189	0	0
ATP6V0D2	245972	broad.mit.edu	37	8	87163713	87163713	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:87163713G>A	uc003ydp.1	+	7	904	c.835G>A	c.(835-837)GAA>AAA	p.E279K		NM_152565	NP_689778	Q8N8Y2	VA0D2_HUMAN	ATPase, H+ transporting, lysosomal 38kDa, V0	279					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	apical plasma membrane|endosome membrane|proton-transporting V-type ATPase, V0 domain|vacuolar proton-transporting V-type ATPase complex	hydrogen ion transmembrane transporter activity|protein binding				0						ACCTTTATTTGAAGCTGTAGG	0.299													8	24					0	0	0.000673444	0	0
CNGB3	54714	broad.mit.edu	37	8	87738832	87738832	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:87738832G>A	uc003ydx.2	-	3	311	c.265C>T	c.(265-267)CAA>TAA	p.Q89*		NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	89	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						GCTGCATTTTGAGGGTCAGGG	0.413													58	166					0	0	0.00361006	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88886032	88886032	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:88886032C>T	uc003ydz.2	-	1	265	c.168G>A	c.(166-168)AGG>AGA	p.R56R		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	56										ovary(1)	1						GGACCTTTTTCCTCTGCATGC	0.502													29	49					0	0	0.001512	0	0
DPY19L4	286148	broad.mit.edu	37	8	95800237	95800237	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:95800237G>A	uc003ygx.2	+	18	2088	c.1964G>A	c.(1963-1965)AGA>AAA	p.R655K		NM_181787	NP_861452	Q7Z388	D19L4_HUMAN	dpy-19-like 4	655						integral to membrane				ovary(2)	2	Breast(36;3.85e-06)					GGACCCATGAGAGGCTGTAGG	0.318													130	295					0	0	0.00361006	0	0
CCNE2	9134	broad.mit.edu	37	8	95906253	95906253	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:95906253G>T	uc003yhc.2	-	3	218	c.109C>A	c.(109-111)CAG>AAG	p.Q37K	C8orf38_uc003yhe.1_5'Flank|C8orf38_uc003yhf.2_5'Flank|CCNE2_uc003yhd.2_Missense_Mutation_p.Q37K	NM_057749	NP_477097	O96020	CCNE2_HUMAN	cyclin E2	37					cell cycle checkpoint|cell division|G1/S transition of mitotic cell cycle|regulation of cyclin-dependent protein kinase activity	cytosol|nucleoplasm	protein kinase binding				0	Breast(36;8.75e-07)					TAAATCACCTGGGTAGTTTTC	0.468													13	567					0.000308642	0.000840457	0.00316338	1	0
PTDSS1	9791	broad.mit.edu	37	8	97299284	97299284	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:97299284C>T	uc003yht.1	+	4	453	c.351C>T	c.(349-351)TTC>TTT	p.F117F	PTDSS1_uc003yhu.1_Intron	NM_014754	NP_055569	P48651	PTSS1_HUMAN	phosphatidylserine synthase 1	117	Helical; (Potential).				phosphatidylserine biosynthetic process	integral to membrane	transferase activity			ovary(1)	1	Breast(36;6.18e-05)				Phosphatidylserine(DB00144)	TCCTGGTATTCCTACTCTTCC	0.408													102	69					0	0	0.00361006	0	0
VPS13B	157680	broad.mit.edu	37	8	100887729	100887729	+	Silent	SNP	C	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:100887729C>A	uc003yiv.2	+	62	12015	c.11904C>A	c.(11902-11904)GCC>GCA	p.A3968A	VPS13B_uc003yiw.2_Silent_p.A3943A	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	3968					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			GTCACCTGGCCCCCAGCTGTT	0.483													48	29					2.43468e-25	6.69493e-25	0.00361006	1	0
RIMS2	9699	broad.mit.edu	37	8	105260975	105260975	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:105260975G>A	uc003yls.2	+	25	3818	c.3577G>A	c.(3577-3579)GAT>AAT	p.D1193N	RIMS2_uc003ylp.2_Missense_Mutation_p.D1175N|RIMS2_uc003ylw.2_Missense_Mutation_p.D1182N|RIMS2_uc003ylq.2_Missense_Mutation_p.D989N|RIMS2_uc003ylr.2_Missense_Mutation_p.D1014N	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1237					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			CCAGTTCAGTGATTTCCTGGA	0.458										HNSCC(12;0.0054)			17	73					0	0	0.00278032	0	0
ZFPM2	23414	broad.mit.edu	37	8	106813867	106813867	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:106813867G>A	uc003ymd.2	+	8	1580	c.1557G>A	c.(1555-1557)AAG>AAA	p.K519K	ZFPM2_uc011lhs.1_Silent_p.K250K	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	519					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			TCTTAGCTAAGATGTCTGAAC	0.498													19	72					0	0	0.000958276	0	0
ABRA	137735	broad.mit.edu	37	8	107781815	107781815	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:107781815C>T	uc003ymm.3	-	1	658	c.604G>A	c.(604-606)GAG>AAG	p.E202K		NM_139166	NP_631905	Q8N0Z2	ABRA_HUMAN	actin-binding Rho activating protein	202					positive regulation of Rho protein signal transduction|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent|transmembrane transport	actin cytoskeleton|plasma membrane|sarcomere	actin binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(57;3.83e-09)			TCGGGCCTCTCCTCAGCCTCT	0.592													156	54					0	0	0.00361006	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110412520	110412520	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:110412520G>A	uc003yne.2	+	13	1332	c.1228G>A	c.(1228-1230)GGT>AGT	p.G410S		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	410	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CTACATCAAGGGTGATGACCG	0.383										HNSCC(38;0.096)			22	86					0	0	0.00278032	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110497314	110497314	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:110497314C>T	uc003yne.2	+	58	9722	c.9618C>T	c.(9616-9618)TTC>TTT	p.F3206F		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3206	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GCTACGATTTCCACCAGACAG	0.323										HNSCC(38;0.096)			9	23					0	0	0.000442599	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110510883	110510883	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:110510883G>A	uc003yne.2	+	67	10816	c.10712_splice	c.e67-1	p.G3571_splice		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor						immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTTGGTAAAAGGTGGGAGAAG	0.398										HNSCC(38;0.096)			22	10					0	0	0.00332997	0	0
CSMD3	114788	broad.mit.edu	37	8	114185968	114185968	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:114185968G>A	uc003ynu.2	-	4	851	c.692C>T	c.(691-693)CCT>CTT	p.P231L	CSMD3_uc003ynt.2_Missense_Mutation_p.P191L|CSMD3_uc011lhx.1_Missense_Mutation_p.P231L|CSMD3_uc010mcx.1_Missense_Mutation_p.P231L	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	231	Extracellular (Potential).|Sushi 1.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GATAGGAACAGGAAAATCCCA	0.418										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			9	52					0	0	0.000978159	0	0
CSMD3	114788	broad.mit.edu	37	8	114327001	114327001	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:114327001C>T	uc003ynu.2	-	2	359	c.200G>A	c.(199-201)GGA>GAA	p.G67E	CSMD3_uc003ynt.2_Missense_Mutation_p.G27E|CSMD3_uc011lhx.1_Missense_Mutation_p.G67E|CSMD3_uc010mcx.1_Missense_Mutation_p.G67E|CSMD3_uc003ynx.3_Missense_Mutation_p.G67E	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	67	Extracellular (Potential).|CUB 1.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TTTTAAAGTTCCACCACATGT	0.318										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			122	45					0	0	0.00361006	0	0
SAMD12	401474	broad.mit.edu	37	8	119391684	119391684	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:119391684G>A	uc003yom.2	-	4	707	c.578C>T	c.(577-579)TCC>TTC	p.S193F	SAMD12_uc010mda.1_Intron|SAMD12_uc010mdb.1_Intron	NM_207506	NP_997389	Q8N8I0	SAM12_HUMAN	sterile alpha motif domain containing 12 isoform	193										ovary(1)	1	all_cancers(13;3.91e-25)|Lung NSC(37;1.13e-07)|Ovarian(258;0.0249)		STAD - Stomach adenocarcinoma(47;0.00391)			TTCTATGATGGAAATTCTGTG	0.378													9	20					0	0	0.000978159	0	0
TNFRSF11B	4982	broad.mit.edu	37	8	119938786	119938786	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:119938786T>G	uc003yon.3	-	4	1087	c.764A>C	c.(763-765)AAG>ACG	p.K255T	TNFRSF11B_uc010mdc.1_RNA	NM_002546	NP_002537	O00300	TR11B_HUMAN	osteoprotegerin precursor	255	Death 1.				apoptosis|skeletal system development		cytokine activity|receptor activity			central_nervous_system(2)	2	all_cancers(13;3.71e-26)|Lung NSC(37;1.69e-07)|Ovarian(258;0.018)|all_neural(195;0.0592)|Hepatocellular(40;0.234)		STAD - Stomach adenocarcinoma(47;0.00193)			TTTCCATAACTTCAGCAGCTG	0.383													29	126					0	0	0.00327116	0	0
COLEC10	10584	broad.mit.edu	37	8	120114604	120114604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:120114604G>A	uc003yoo.2	+	4	407	c.310G>A	c.(310-312)GGT>AGT	p.G104S		NM_006438	NP_006429	Q9Y6Z7	COL10_HUMAN	collectin sub-family member 10 precursor	104	Collagen-like.					collagen|cytoplasm	mannose binding			ovary(2)|skin(1)	3	all_cancers(13;4.13e-26)|Lung NSC(37;1.36e-07)|Ovarian(258;0.018)|Hepatocellular(40;0.234)		STAD - Stomach adenocarcinoma(47;0.00113)			AGGGGAAAAAGGTTTGCTTGG	0.249													6	20					0	0	0.000673444	0	0
FAM83A	84985	broad.mit.edu	37	8	124219445	124219445	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:124219445C>T	uc003ypv.2	+	5	2836	c.822C>T	c.(820-822)TTC>TTT	p.F274F	FAM83A_uc003ypw.2_Silent_p.F274F|FAM83A_uc003ypy.2_Silent_p.F218F|FAM83A_uc003ypx.2_Silent_p.F274F|FAM83A_uc003ypz.2_Silent_p.F274F	NM_032899	NP_116288	Q86UY5	FA83A_HUMAN	hypothetical protein LOC84985 isoform a	274										ovary(3)|skin(1)	4	Lung NSC(37;1.55e-09)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			TCTCCAAGTTCACAGGCCAGG	0.463													8	38					0	0	0.000274275	0	0
ADCY8	114	broad.mit.edu	37	8	131859744	131859744	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:131859744C>T	uc003ytd.3	-	11	2684	c.2428G>A	c.(2428-2430)GAC>AAC	p.D810N	ADCY8_uc010mds.2_Intron	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	810					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			ATCGACTTGTCAAAATCACAC	0.353										HNSCC(32;0.087)			10	39					0	0	0.000978159	0	0
FAM135B	51059	broad.mit.edu	37	8	139164728	139164728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:139164728C>T	uc003yuy.2	-	13	2161	c.1990G>A	c.(1990-1992)GAA>AAA	p.E664K	FAM135B_uc003yux.2_Missense_Mutation_p.E565K|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.E226K|FAM135B_uc003yvb.2_Missense_Mutation_p.E226K	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	664										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TCCTGCTCTTCTGTGTGAGAG	0.507										HNSCC(54;0.14)			19	74					0	0	0.00121646	0	0
FAM135B	51059	broad.mit.edu	37	8	139164862	139164862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:139164862C>T	uc003yuy.2	-	13	2027	c.1856G>A	c.(1855-1857)GGA>GAA	p.G619E	FAM135B_uc003yux.2_Missense_Mutation_p.G520E|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.G181E|FAM135B_uc003yvb.2_Missense_Mutation_p.G181E	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	619										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TATTCCCTTTCCTAGAGTACT	0.478										HNSCC(54;0.14)			29	93					0	0	0.001512	0	0
COL22A1	169044	broad.mit.edu	37	8	139712353	139712353	+	Splice_Site	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:139712353A>C	uc003yvd.2	-	32	3039	c.2592_splice	c.e32+1	p.P864_splice	COL22A1_uc011ljo.1_Splice_Site_p.P164_splice	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1						cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			GCTACTACTTACGGGCATCCG	0.557										HNSCC(7;0.00092)			5	22					0	0	0.00307968	0	0
EIF2C2	27161	broad.mit.edu	37	8	141545600	141545600	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:141545600G>A	uc003yvn.2	-	17	2278	c.2238C>T	c.(2236-2238)TTC>TTT	p.F746F	EIF2C2_uc010men.2_Silent_p.F669F|EIF2C2_uc010meo.2_Intron	NM_012154	NP_036286	Q9UKV8	AGO2_HUMAN	argonaute 2 isoform 1	746	Piwi.				mRNA cleavage involved in gene silencing by miRNA|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|pre-miRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|mRNA cap binding complex|nucleus|polysome|RNA-induced silencing complex	endoribonuclease activity, cleaving siRNA-paired mRNA|metal ion binding|protein binding|RNA 7-methylguanosine cap binding|siRNA binding|translation initiation factor activity				0	all_cancers(97;2.54e-14)|all_epithelial(106;5.99e-13)|Lung NSC(106;1.45e-05)|all_lung(105;2.07e-05)|Ovarian(258;0.0154)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.158)			GGTAGAAGTCGAACTCGGTGG	0.562													28	79					0	0	0.00209593	0	0
DENND3	22898	broad.mit.edu	37	8	142161922	142161922	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:142161922G>A	uc003yvy.2	+	7	1098	c.820G>A	c.(820-822)GAA>AAA	p.E274K	DENND3_uc010mep.2_Missense_Mutation_p.E287K	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	274	DENN.									ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			CGACCACTTCGAAGAAGTCAG	0.552													34	85					0	0	0.00128727	0	0
TSNARE1	203062	broad.mit.edu	37	8	143381912	143381912	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:143381912G>A	uc003ywk.2	-	10	1343	c.1225C>T	c.(1225-1227)CCG>TCG	p.P409S	TSNARE1_uc011lju.1_Missense_Mutation_p.P408S|TSNARE1_uc003ywj.2_Missense_Mutation_p.P410S|TSNARE1_uc003ywl.3_Missense_Mutation_p.P190S	NM_145003	NP_659440	Q96NA8	TSNA1_HUMAN	t-SNARE domain containing 1	409					vesicle-mediated transport	integral to membrane					0	all_cancers(97;7.39e-11)|all_epithelial(106;8.98e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000332)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					GTGATGTCCGGGAGCAGCGCC	0.632													15	35					0	0	0.000566183	0	0
BAI1	575	broad.mit.edu	37	8	143569868	143569868	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:143569868G>A	uc003ywm.2	+	13	2635	c.2452G>A	c.(2452-2454)GAG>AAG	p.E818K		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	818	Extracellular (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					GGGGCTGACAGGTGAGGGGCC	0.652													7	38					0	0	0.000442599	0	0
LYNX1	66004	broad.mit.edu	37	8	143857012	143857012	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:143857012G>A	uc003yxc.1	-	3	423	c.153C>T	c.(151-153)ACC>ACT	p.T51T	LYNX1_uc003yxb.2_Silent_p.T51T|LYNX1_uc003yxd.1_Silent_p.T51T|LYNX1_uc003yxe.1_Silent_p.T51T	NM_177476	NP_803429	Q9BZG9	LYNX1_HUMAN	Ly-6 neurotoxin-like protein 1 isoform c	51	UPAR/Ly6.					anchored to membrane|plasma membrane					0	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					CAGACTCACAGGTGCGCGTGG	0.662													8	5					0	0	0.00307968	0	0
CYP11B2	1585	broad.mit.edu	37	8	143994724	143994724	+	Silent	SNP	C	T	T	rs61757297	byFrequency	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:143994724C>T	uc003yxk.1	-	6	1101	c.1098G>A	c.(1096-1098)CGG>CGA	p.R366R		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	366					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	TGAGGGCCGCCCGCAGCAAGG	0.692									Familial_Hyperaldosteronism_type_I				32	29					0	0	0.00361006	0	0
MAPK15	225689	broad.mit.edu	37	8	144801597	144801597	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:144801597C>T	uc003yzj.2	+	7	707	c.666C>T	c.(664-666)TCC>TCT	p.S222S		NM_139021	NP_620590	Q8TD08	MK15_HUMAN	mitogen-activated protein kinase 15	222	Protein kinase.				protein autophosphorylation	extracellular region	ATP binding|MAP kinase activity|SH3 domain binding			lung(2)	2	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			CCGGCACGTCCACCCTCCACC	0.662													14	39					0	0	0.00121646	0	0
EPPK1	83481	broad.mit.edu	37	8	144940898	144940898	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr8:144940898T>C	uc003zaa.1	-	1	6537	c.6524A>G	c.(6523-6525)CAA>CGA	p.Q2175R		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	2175						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TCTAATTCCTTGGAACCACAG	0.517													76	258					0	0	0.00361006	0	0
SMARCA2	6595	broad.mit.edu	37	9	2081880	2081880	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:2081880G>A	uc003zhc.2	+	15	2332	c.2233G>A	c.(2233-2235)GGA>AGA	p.G745R	SMARCA2_uc003zhd.2_Missense_Mutation_p.G745R|SMARCA2_uc010mha.2_Missense_Mutation_p.G736R	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	745	Helicase ATP-binding.				chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		CAACTTGAACGGAATCTTAGC	0.423													15	3					0	0	0.000566183	0	0
INSL6	11172	broad.mit.edu	37	9	5164164	5164164	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:5164164A>T	uc003zix.2	-	2	407	c.391T>A	c.(391-393)TTT>ATT	p.F131I		NM_007179	NP_009110	Q9Y581	INSL6_HUMAN	insulin-like 6 precursor	131						extracellular region	hormone activity				0	all_hematologic(13;0.137)	Breast(48;0.147)|Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0128)|Lung(218;0.145)		GATGAAGAAAATTCTCTTGTC	0.338													26	4					0	0	0.00395357	0	0
KIAA2026	158358	broad.mit.edu	37	9	5924691	5924691	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:5924691G>A	uc003zjq.3	-	7	2869	c.2653C>T	c.(2653-2655)CTG>TTG	p.L885L	KIAA2026_uc010mht.2_Silent_p.L60L	NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	885										ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		AGGATATCCAGAGGTTCTGTT	0.368													34	7					0	0	0.00428921	0	0
IL33	90865	broad.mit.edu	37	9	6256006	6256006	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:6256006C>T	uc003zjt.2	+	8	708	c.651C>T	c.(649-651)TTC>TTT	p.F217F	IL33_uc011lmg.1_Silent_p.F175F|IL33_uc011lmh.1_Silent_p.F91F|IL33_uc003zju.1_Silent_p.F217F	NM_033439	NP_254274	O95760	IL33_HUMAN	interleukin 33 precursor	217					positive regulation of chemokine secretion|positive regulation of inflammatory response|positive regulation of macrophage activation|positive regulation of transcription from RNA polymerase II promoter	extracellular space	cytokine activity				0		Acute lymphoblastic leukemia(23;0.158)|Prostate(43;0.167)		GBM - Glioblastoma multiforme(50;0.0161)|Lung(218;0.105)		ACCAGGCCTTCTTTGTCCTTC	0.403													20	4					0	0	0.00332997	0	0
FREM1	158326	broad.mit.edu	37	9	14776104	14776104	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:14776104C>T	uc003zlm.2	-	25	5130	c.4540G>A	c.(4540-4542)GGG>AGG	p.G1514R	FREM1_uc010mic.2_Intron|FREM1_uc003zlk.2_5'Flank|FREM1_uc003zll.2_Missense_Mutation_p.G50R	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1514	CSPG 11.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		AGTCTCAACCCCTTGTTCCTG	0.587													24	6					0	0	0.000720815	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18574073	18574073	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:18574073G>A	uc003zne.3	+	4	410	c.283G>A	c.(283-285)GCT>ACT	p.A95T	ADAMTSL1_uc003znb.2_Missense_Mutation_p.A95T|ADAMTSL1_uc003znc.3_Missense_Mutation_p.A95T	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	95						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		GCAATGCTCAGCTCATAATGA	0.473													35	7					0	0	0.00111076	0	0
SLC24A2	25769	broad.mit.edu	37	9	19520939	19520939	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:19520939C>T	uc003zoa.1	-	9	1751	c.1689G>A	c.(1687-1689)ATG>ATA	p.M563I	SLC24A2_uc003zob.1_Missense_Mutation_p.M546I	NM_020344	NP_065077	Q9UI40	NCKX2_HUMAN	solute carrier family 24	563	Alpha-2.|Extracellular (Potential).				visual perception	integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(3)	3				GBM - Glioblastoma multiforme(1;1.67e-55)|Lung(42;0.0443)		TGGACACAGCCATGTCCCCTA	0.512													10	2					0	0	0.000673444	0	0
SLC24A2	25769	broad.mit.edu	37	9	19786072	19786072	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:19786072C>T	uc003zoa.1	-	1	855	c.793G>A	c.(793-795)GAA>AAA	p.E265K	SLC24A2_uc003zob.1_Missense_Mutation_p.E265K	NM_020344	NP_065077	Q9UI40	NCKX2_HUMAN	solute carrier family 24	265	Extracellular (Potential).				visual perception	integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(3)	3				GBM - Glioblastoma multiforme(1;1.67e-55)|Lung(42;0.0443)		AGCAAGCTTTCCCACCACATG	0.383													14	3					0	0	0.00244969	0	0
IFNA21	3452	broad.mit.edu	37	9	21166166	21166166	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:21166166C>T	uc003zom.2	-	1	494	c.446G>A	c.(445-447)AGA>AAA	p.R149K		NM_002175	NP_002166	P01568	IFN21_HUMAN	interferon, alpha 21 precursor	149					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding			central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(5;1.93e-187)|Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		AAGAGTGATTCTTTGGAAGTA	0.448													47	8					0	0	0.00361006	0	0
IFNA5	3442	broad.mit.edu	37	9	21305016	21305016	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:21305016G>A	uc011lnh.1	-	1	240	c.240C>T	c.(238-240)CTC>CTT	p.L80L		NM_002169	NP_002160	P01569	IFNA5_HUMAN	interferon, alpha 5 precursor	80					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding			ovary(1)	1				Lung(24;2.34e-24)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		TCATCTCATGGAGGACAGAGA	0.468													27	7					0	0	0.000720815	0	0
TEK	7010	broad.mit.edu	37	9	27172711	27172711	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:27172711C>T	uc003zqi.3	+	5	1168	c.726C>T	c.(724-726)TGC>TGT	p.C242C	TEK_uc010mjc.1_Silent_p.C95C|TEK_uc011lnn.1_Silent_p.C242C|TEK_uc011lno.1_Silent_p.C242C|TEK_uc011lnp.1_Silent_p.C138C|TEK_uc003zqj.1_Silent_p.C219C	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	242	Extracellular (Potential).|EGF-like 1.				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		AATGCATTTGCCCTCCTGGGT	0.443													12	10					0	0	0.00136819	0	0
TAF1L	138474	broad.mit.edu	37	9	32631485	32631485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:32631485G>A	uc003zrg.1	-	1	4183	c.4093C>T	c.(4093-4095)CCT>TCT	p.P1365S	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1365					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TGCTGTTTAGGAAACTTGAGA	0.438													88	64					0	0	0.00361006	0	0
TAF1L	138474	broad.mit.edu	37	9	32633142	32633142	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:32633142C>T	uc003zrg.1	-	1	2526	c.2436G>A	c.(2434-2436)GGG>GGA	p.G812G	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	812					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TGGAGTTAGGCCCAGGAACTT	0.438													39	27					0	0	0.00195071	0	0
ANXA2P2	304	broad.mit.edu	37	9	33624406	33624406	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:33624406C>T	uc010mjx.2	+	1	184	c.135C>T	c.(133-135)GCC>GCT	p.A45A		NM_004039	NP_004030			annexin A2 isoform 2												0						TTGAAACAGCCATCAAGACCA	0.483											OREG0019140	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	15					0	0	0.00375469	0	0
KIAA1161	57462	broad.mit.edu	37	9	34372144	34372144	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:34372144G>A	uc003zue.3	-	3	965	c.798C>T	c.(796-798)CCC>CCT	p.P266P		NM_020702	NP_065753	Q6NSJ0	K1161_HUMAN	hypothetical protein LOC57462	266	Extracellular (Potential).				carbohydrate metabolic process	integral to membrane	hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|breast(1)|central_nervous_system(1)	3			LUSC - Lung squamous cell carcinoma(29;0.0107)	GBM - Glioblastoma multiforme(74;0.126)		GTGGCTTGTAGGGCGTGTCGT	0.667													12	24					0	0	0.00316338	0	0
FANCG	2189	broad.mit.edu	37	9	35078706	35078706	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:35078706G>A	uc003zwb.1	-	3	695	c.203C>T	c.(202-204)CCC>CTC	p.P68L	FANCG_uc003zwa.1_5'Flank|FANCG_uc010mkj.1_5'UTR|FANCG_uc011lot.1_Missense_Mutation_p.P68L	NM_004629	NP_004620	O15287	FANCG_HUMAN	Fanconi anemia, complementation group G	68					cell cycle checkpoint|DNA repair|mitochondrion organization	mitochondrion|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|large_intestine(1)|lung(1)	4			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			CAGCTCCAAGGGAAGAACAGG	0.532			Mis|N|F|S			AML|leukemia		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				8	60					0	0	0.000442599	0	0
CD72	971	broad.mit.edu	37	9	35612968	35612968	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:35612968C>T	uc003zxb.2	-	6	835	c.711G>A	c.(709-711)TGG>TGA	p.W237*	CD72_uc003zxc.1_Nonsense_Mutation_p.W22*|CD72_uc010mkt.1_Nonsense_Mutation_p.W22*|CD72_uc010mku.2_Nonsense_Mutation_p.W237*	NM_001782	NP_001773	P21854	CD72_HUMAN	CD72 molecule	237	C-type lectin.|Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	receptor binding|sugar binding|transmembrane receptor activity				0			Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			GATGCATTATCCATCCCGACG	0.413													47	23					0	0	0.00361006	0	0
TLN1	7094	broad.mit.edu	37	9	35719223	35719223	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:35719223A>G	uc003zxt.2	-	16	2098	c.1744T>C	c.(1744-1746)TCC>CCC	p.S582P		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	582					axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			GTCAGGTTGGAGGAGATTGTG	0.607													18	11					0	0	0.00152264	0	0
SPAG8	26206	broad.mit.edu	37	9	35811392	35811392	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:35811392G>A	uc003zye.2	-	2	766	c.651C>T	c.(649-651)TTC>TTT	p.F217F	SPAG8_uc003zyf.2_Silent_p.F134F|SPAG8_uc003zyg.2_Silent_p.F217F	NM_172312	NP_758516	Q99932	SPAG8_HUMAN	sperm associated antigen 8 isoform 2	217						acrosomal vesicle|membrane				ovary(1)	1	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)			CCAGGTTTCTGAACCCTGGAG	0.512													40	126					0	0	0.00321405	0	0
FRMPD1	22844	broad.mit.edu	37	9	37729769	37729769	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:37729769C>T	uc004aag.1	+	8	701	c.657C>T	c.(655-657)ATC>ATT	p.I219I	FRMPD1_uc004aah.1_Silent_p.I219I|FRMPD1_uc011lqm.1_Silent_p.I41I|FRMPD1_uc011lqn.1_Silent_p.I88I	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	219	FERM.					cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		TCCGAAGTATCGAGTACTTTG	0.567													26	74					0	0	0.000720815	0	0
FRMPD1	22844	broad.mit.edu	37	9	37745844	37745844	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:37745844C>T	uc004aag.1	+	16	3859	c.3815C>T	c.(3814-3816)TCA>TTA	p.S1272L	FRMPD1_uc004aah.1_Missense_Mutation_p.S1272L	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	1272						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		TTAGAAACTTCAAACCATTGC	0.488													25	98					0	0	0.00395357	0	0
SHB	6461	broad.mit.edu	37	9	37919910	37919910	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:37919910C>T	uc004aax.2	-	6	2006	c.1438G>A	c.(1438-1440)GAA>AAA	p.E480K		NM_003028	NP_003019	Q15464	SHB_HUMAN	Src homology 2 domain containing adaptor protein	480	SH2.				angiogenesis|apoptosis|cell differentiation|signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity			central_nervous_system(2)|skin(1)	3		all_epithelial(88;0.122)		GBM - Glioblastoma multiforme(29;3.27e-05)|Lung(182;0.0658)		TGGATGACTTCCGGGACACTG	0.532													45	29					0	0	0.00285205	0	0
CNTNAP3	79937	broad.mit.edu	37	9	39144264	39144264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:39144264C>T	uc004abi.2	-	11	1968	c.1729G>A	c.(1729-1731)GGC>AGC	p.G577S	CNTNAP3_uc004abj.2_Missense_Mutation_p.G577S|CNTNAP3_uc011lqr.1_Intron|CNTNAP3_uc004abk.1_Missense_Mutation_p.G577S|CNTNAP3_uc011lqs.1_Intron|CNTNAP3_uc004abl.1_Intron	NM_033655	NP_387504	Q9BZ76	CNTP3_HUMAN	cell recognition molecule CASPR3 precursor	577	EGF-like 1.|Extracellular (Potential).				cell adhesion|cell recognition|signal transduction	extracellular region|integral to membrane|plasma membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		CCCGTATAGCCTGTGCCTAGA	0.493													6	5					0	0	0.000673444	0	0
FAM75A6	389730	broad.mit.edu	37	9	43627414	43627414	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:43627414C>G	uc011lrb.1	-	4	1302	c.1273G>C	c.(1273-1275)GAG>CAG	p.E425Q		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	425						integral to membrane					0						ACCAGGGACTCGCTGTGCAGA	0.498													162	103					0	0	0.00361006	0	0
Unknown	0	broad.mit.edu	37	9	66513833	66513833	+	RNA	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:66513833G>A	uc010mnh.1	-	6		c.915C>T								Homo sapiens cDNA FLJ20444 fis, clone KAT05128.																		TCTTCTACATGATCAACGCAG	0.488													9	55					0	0	0.000673444	0	0
AQP7P1	375719	broad.mit.edu	37	9	67281776	67281776	+	RNA	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:67281776T>G	uc004aem.1	-	1		c.129A>C			AQP7P1_uc004aen.1_Intron|AQP7P1_uc004aeo.1_RNA|AQP7P1_uc004aep.1_Intron					Homo sapiens aquaporin 7 pseudogene 1, mRNA (cDNA clone IMAGE:6191443).												0						TCGCACCATATTTCCTGGATC	0.542													4	57					0	0	0.000602214	0	0
Unknown	0	broad.mit.edu	37	9	70181982	70181982	+	RNA	SNP	T	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:70181982T>C	uc004afw.2	-	3		c.2130A>G								Homo sapiens COBW domain containing 5, mRNA (cDNA clone IMAGE:5287337), complete cds.																		CACTTTGTTTTAAAACTGTGA	0.373													13	61					0	0	0.00332997	0	0
C9orf71	169693	broad.mit.edu	37	9	71152294	71152294	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:71152294C>T	uc004agt.2	-	2	447	c.394G>A	c.(394-396)GAA>AAA	p.E132K	uc004ags.1_RNA	NM_153237	NP_694969	Q8N6L7	CI071_HUMAN	hypothetical protein LOC169693	132						integral to membrane					0						TCCTGGAATTCCAGGCCCGTC	0.552													18	32					0	0	0.000958276	0	0
PIP5K1B	8395	broad.mit.edu	37	9	71478832	71478832	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:71478832G>A	uc004agu.2	+	5	454	c.149G>A	c.(148-150)CGA>CAA	p.R50Q	PIP5K1B_uc011lrq.1_Missense_Mutation_p.R50Q|PIP5K1B_uc004agv.2_RNA	NM_003558	NP_003549	O14986	PI51B_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	50	PIPK.					endomembrane system|membrane|uropod	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|protein binding			stomach(1)	1				Lung(182;0.133)		AAGCCAGAACGAGATGTTCTT	0.403													33	82					0	0	0.00375469	0	0
APBA1	320	broad.mit.edu	37	9	72067079	72067079	+	Missense_Mutation	SNP	C	T	T	rs140108483		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:72067079C>T	uc004ahh.2	-	9	2203	c.1927G>A	c.(1927-1929)GAT>AAT	p.D643N		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	643	PID.				axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						ATCAGGTCATCGTTGTACATG	0.517													53	106					0	0	0.00361006	0	0
RORB	6096	broad.mit.edu	37	9	77275628	77275628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:77275628G>A	uc004aji.2	+	5	815	c.766G>A	c.(766-768)GAA>AAA	p.E256K	RORB_uc004ajh.2_Missense_Mutation_p.E245K	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	256	Ligand-binding (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						CCACACCTATGAAGAAATTAA	0.388													36	48					0	0	0.00327116	0	0
PCSK5	5125	broad.mit.edu	37	9	78601055	78601055	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:78601055G>A	uc004ajz.2	+	3	843	c.305G>A	c.(304-306)TGG>TAG	p.W102*	PCSK5_uc004ajy.2_Nonsense_Mutation_p.W102*|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	102					anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						CAGGTGGAATGGATCCAACAG	0.448													18	65					0	0	0.000958276	0	0
PCSK5	5125	broad.mit.edu	37	9	78638698	78638698	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:78638698C>T	uc004ajz.2	+	4	994	c.456C>T	c.(454-456)ATC>ATT	p.I152I	PCSK5_uc004ajy.2_Silent_p.I152I|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	152	Catalytic.				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						ACATGAATATCGAAGGAGCCT	0.448													25	43					0	0	0.00332997	0	0
Unknown	0	broad.mit.edu	37	9	78973651	78973651	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:78973651G>A	uc004akc.1	+	10	1872	c.1652G>A	c.(1651-1653)AGC>AAC	p.S551N						Homo sapiens cDNA FLJ16215 fis, clone CTONG2025610, moderately similar to PC6B.																		TATAGAGAGAGCACCAGCTTT	0.512													79	112					0	0	0.00361006	0	0
PRUNE2	158471	broad.mit.edu	37	9	79321591	79321591	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:79321591G>A	uc010mpk.2	-	8	5723	c.5599C>T	c.(5599-5601)CCC>TCC	p.P1867S	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1867					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						ACTCCCCAGGGACTGGCATTT	0.463													21	10					0	0	0.00152264	0	0
VPS13A	23230	broad.mit.edu	37	9	79853039	79853039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:79853039C>T	uc004akr.2	+	18	1977	c.1717C>T	c.(1717-1719)CCA>TCA	p.P573S	VPS13A_uc004akp.3_Missense_Mutation_p.P573S|VPS13A_uc004akq.3_Missense_Mutation_p.P573S|VPS13A_uc004aks.2_Missense_Mutation_p.P573S	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	573	TPR 3.				Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						TGAGATAAATCCATTAGATGA	0.318													60	94					0	0	0.00361006	0	0
FLJ46321	389763	broad.mit.edu	37	9	84606249	84606249	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:84606249C>T	uc004amn.2	+	4	911	c.864C>T	c.(862-864)CCC>CCT	p.P288P		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	288						integral to membrane					0						CCATGAATCCCATTGATTCTT	0.483													87	311					0	0	0.00361006	0	0
FRMD3	257019	broad.mit.edu	37	9	85926816	85926816	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:85926816G>A	uc004ams.1	-	8	961	c.759C>T	c.(757-759)ATC>ATT	p.I253I	FRMD3_uc004amr.1_Silent_p.I239I	NM_174938	NP_777598	A2A2Y4	FRMD3_HUMAN	FERM domain containing 3	253	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)|central_nervous_system(1)	2						TTATCAAATGGATTCTCTTAT	0.383													15	49					0	0	0.00074312	0	0
KIF27	55582	broad.mit.edu	37	9	86504117	86504117	+	Nonsense_Mutation	SNP	G	A	A	rs148451065		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:86504117G>A	uc004ana.2	-	7	2005	c.1861C>T	c.(1861-1863)CGA>TGA	p.R621*	KIF27_uc010mpw.2_Nonsense_Mutation_p.R621*|KIF27_uc010mpx.2_Nonsense_Mutation_p.R621*	NM_017576	NP_060046	Q86VH2	KIF27_HUMAN	kinesin family member 27	621					cilium assembly|microtubule-based movement	cilium|cytoplasm|microtubule	ATP binding|microtubule motor activity			lung(4)|skin(1)	5						CTTCGTGTTCGAAATCCAGCA	0.418													115	107					0	0	0.00361006	0	0
HNRNPK	3190	broad.mit.edu	37	9	86586822	86586822	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:86586822G>A	uc004ang.3	-	11	1152	c.928C>T	c.(928-930)CCT>TCT	p.P310S	HNRNPK_uc011lsw.1_Missense_Mutation_p.P70S|HNRNPK_uc004and.3_Missense_Mutation_p.P70S|HNRNPK_uc004ank.3_Missense_Mutation_p.P310S|HNRNPK_uc004anf.3_Missense_Mutation_p.P310S|HNRNPK_uc004anh.3_Missense_Mutation_p.P286S|HNRNPK_uc011lsx.1_Missense_Mutation_p.P286S|HNRNPK_uc004ani.3_Missense_Mutation_p.P310S|HNRNPK_uc004anj.3_Missense_Mutation_p.P310S|HNRNPK_uc004ann.3_Missense_Mutation_p.P286S|HNRNPK_uc004anl.3_Missense_Mutation_p.P310S|HNRNPK_uc004anm.3_Missense_Mutation_p.P310S|uc004ano.1_5'Flank|MIR7-1_hsa-mir-7-1|MI0000263_5'Flank	NM_031262	NP_112552	P61978	HNRPK_HUMAN	heterogeneous nuclear ribonucleoprotein K	310	Poly-Pro.|5 X 4 AA repeats of G-X-G-G.|2 X 6 AA approximate repeats.|2 X 22 AA approximate repeats.|Interaction with ZIK1 (By similarity).				interspecies interaction between organisms|positive regulation of low-density lipoprotein particle receptor biosynthetic process|positive regulation of receptor-mediated endocytosis|regulation of lipid transport by positive regulation of transcription from an RNA polymerase II promoter|regulation of low-density lipoprotein particle clearance|signal transduction	catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nuclear chromatin|nucleoplasm	protein binding|RNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|single-stranded DNA binding			skin(1)	1						GGTGGTGGAGGAAGAGGAAGA	0.512													28	114					0	0	0.00327116	0	0
SLC28A3	64078	broad.mit.edu	37	9	86894981	86894981	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:86894981C>T	uc010mpz.2	-	16	1862	c.1737G>A	c.(1735-1737)ATG>ATA	p.M579I	SLC28A3_uc011lsy.1_Missense_Mutation_p.M510I|SLC28A3_uc004anu.1_Missense_Mutation_p.M579I	NM_022127	NP_071410	Q9HAS3	S28A3_HUMAN	concentrative Na+-nucleoside cotransporter	579	Cytoplasmic (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to membrane|plasma membrane	nucleoside binding			upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|skin(1)	4						TGGAAGGAGCCATGGATGCTG	0.532													8	19					0	0	0.000274275	0	0
DAPK1	1612	broad.mit.edu	37	9	90219967	90219968	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:90219967_90219968GG>AA	uc004apc.2	+	3	299_300	c.161_162GG>AA	c.(160-162)CGG>CAA	p.R54Q	DAPK1_uc004ape.2_Missense_Mutation_p.R54Q|DAPK1_uc004apd.2_Missense_Mutation_p.R54Q|DAPK1_uc011ltg.1_Missense_Mutation_p.R54Q|DAPK1_uc011lth.1_5'UTR	NM_004938	NP_004929	P53355	DAPK1_HUMAN	death-associated protein kinase 1	54	Protein kinase.				apoptosis|induction of apoptosis by extracellular signals|intracellular protein kinase cascade	actin cytoskeleton|cytoplasm	ATP binding|calmodulin binding|protein serine/threonine kinase activity			ovary(1)|breast(1)	2						TCCAGCCGGCGGGGTGTGAGCC	0.559									Chronic_Lymphocytic_Leukemia_Familial_Clustering_of				34	27					0	0	6.4e-05	0	0
C9orf79	286234	broad.mit.edu	37	9	90502037	90502037	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:90502037G>A	uc004app.3	+	4	2670	c.2635G>A	c.(2635-2637)GCC>ACC	p.A879T	C9orf79_uc004apo.1_Missense_Mutation_p.A691T	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	879						integral to membrane				ovary(3)	3						TACCCCCTGGGCCTCCTGGGT	0.562													16	23					0	0	0.000566183	0	0
FAM75C1	441452	broad.mit.edu	37	9	90534241	90534241	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:90534241G>A	uc010mqi.2	+	2	290	c.261G>A	c.(259-261)AGG>AGA	p.R87R	FAM75C1_uc004apq.3_Silent_p.R70R	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						CCAGAGGCAGGATGAAAAACC	0.542													20	126					0	0	0.000878237	0	0
DIRAS2	54769	broad.mit.edu	37	9	93375518	93375518	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:93375518T>G	uc004aqx.1	-	2	703	c.592A>C	c.(592-594)ATC>CTC	p.I198L		NM_017594	NP_060064	Q96HU8	DIRA2_HUMAN	Di-Ras2	198					small GTPase mediated signal transduction	intracellular|plasma membrane	GTP binding|GTPase activity				0						CTTCACATGATCACGCACTTG	0.562													20	87					0	0	0.00188189	0	0
DIRAS2	54769	broad.mit.edu	37	9	93375766	93375766	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:93375766G>A	uc004aqx.1	-	2	455	c.344C>T	c.(343-345)CCC>CTC	p.P115L		NM_017594	NP_060064	Q96HU8	DIRA2_HUMAN	Di-Ras2	115					small GTPase mediated signal transduction	intracellular|plasma membrane	GTP binding|GTPase activity				0						CAGCATGATGGGGATGCTCTC	0.582													22	86					0	0	0.00332997	0	0
ROR2	4920	broad.mit.edu	37	9	94486368	94486368	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:94486368G>A	uc004arj.1	-	9	2607	c.2408C>T	c.(2407-2409)CCC>CTC	p.P803L	ROR2_uc004ari.1_Intron	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	803	Cytoplasmic (Potential).|Pro-rich.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						GCCCTTCATGGGGATGAACTG	0.672													48	36					0	0	0.00361006	0	0
BICD2	23299	broad.mit.edu	37	9	95481688	95481688	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:95481688C>T	uc004aso.1	-	5	1296	c.1239G>A	c.(1237-1239)GAG>GAA	p.E413E	BICD2_uc004asp.1_Silent_p.E413E	NM_015250	NP_056065	Q8TD16	BICD2_HUMAN	bicaudal D homolog 2 isoform 2	413	Potential.				microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule	cytoplasmic vesicle|cytoskeleton|Golgi apparatus|plasma membrane	Rab GTPase binding			skin(1)	1						CACGGTCCTTCTCGTTGTCCA	0.607													11	57					0	0	0.000978159	0	0
KIAA1529	57653	broad.mit.edu	37	9	100090419	100090419	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:100090419C>T	uc011lut.1	+	28	3101	c.2328C>T	c.(2326-2328)ATC>ATT	p.I776I	KIAA1529_uc004axe.1_Silent_p.I776I|KIAA1529_uc004axg.1_Silent_p.I637I|KIAA1529_uc004axh.1_5'Flank|KIAA1529_uc011luw.1_5'Flank|KIAA1529_uc011lus.1_Silent_p.I594I|KIAA1529_uc010msm.1_Intron|KIAA1529_uc004axf.2_Silent_p.I637I|KIAA1529_uc011luv.1_Silent_p.I634I	NM_020893	NP_065944			hypothetical protein LOC57653											ovary(4)|large_intestine(2)|skin(1)	7		Acute lymphoblastic leukemia(62;0.154)				TGCGTGAAATCTTTGAACAGG	0.478													26	61					0	0	0.000878237	0	0
KIAA1529	57653	broad.mit.edu	37	9	100127970	100127970	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:100127970C>T	uc011lut.1	+	42	5318	c.4545C>T	c.(4543-4545)ATC>ATT	p.I1515I	KIAA1529_uc004axe.1_Silent_p.I1321I|KIAA1529_uc004axg.1_Silent_p.I1376I|KIAA1529_uc004axh.1_RNA|KIAA1529_uc011luw.1_Silent_p.I469I|MIR1302-8_hsa-mir-1302-8|MI0006369_5'Flank	NM_020893	NP_065944			hypothetical protein LOC57653											ovary(4)|large_intestine(2)|skin(1)	7		Acute lymphoblastic leukemia(62;0.154)				TTAAGGGGATCATCTTGACCC	0.552													21	94					0	0	0.000720815	0	0
ANKS6	203286	broad.mit.edu	37	9	101530400	101530400	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:101530400G>A	uc004ayu.2	-	11	2126	c.2105C>T	c.(2104-2106)CCA>CTA	p.P702L	ANKS6_uc004ayt.2_Missense_Mutation_p.P401L|ANKS6_uc004ayv.1_Missense_Mutation_p.P164L|ANKS6_uc004ayw.1_Missense_Mutation_p.P284L|ANKS6_uc004ayx.1_RNA|ANKS6_uc004ayy.1_RNA	NM_173551	NP_775822	Q68DC2	ANKS6_HUMAN	ankyrin repeat and sterile alpha motif domain	702	Ser-rich.									ovary(2)	2		Acute lymphoblastic leukemia(62;0.0527)				AGGGGAGGCTGGAAGCTCAGA	0.587													15	16					0	0	0.00244969	0	0
COL15A1	1306	broad.mit.edu	37	9	101748019	101748019	+	Silent	SNP	C	T	T	rs141708640		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:101748019C>T	uc004azb.1	+	3	479	c.273C>T	c.(271-273)TTC>TTT	p.F91F	COL15A1_uc004aza.2_Silent_p.F91F	NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	91	TSP N-terminal.				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				TCAGGGACTTCGCCATCAGCG	0.622													15	36					0	0	0.000566183	0	0
COL15A1	1306	broad.mit.edu	37	9	101824273	101824273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:101824273G>A	uc004azb.1	+	37	3629	c.3423G>A	c.(3421-3423)ATG>ATA	p.M1141I		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	1141	Nonhelical region 10 (NC10).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				TCAGCAACATGGATGACATGC	0.423													75	67					0	0	0.00361006	0	0
LPPR1	54886	broad.mit.edu	37	9	104032222	104032222	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:104032222C>T	uc004bbb.2	+	3	523	c.124C>T	c.(124-126)CAG>TAG	p.Q42*	LPPR1_uc011lvi.1_Nonsense_Mutation_p.Q18*|LPPR1_uc004bbc.2_Nonsense_Mutation_p.Q42*|LPPR1_uc010mtc.2_Nonsense_Mutation_p.Q26*	NM_207299	NP_997182	Q8TBJ4	LPPR1_HUMAN	plasticity related gene 3	42						integral to membrane	catalytic activity				0						TGACACTTTTCAGGTGCATAT	0.493													20	75					0	0	0.00188189	0	0
BAAT	570	broad.mit.edu	37	9	104125001	104125001	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:104125001G>A	uc010mtd.2	-	4	1075	c.966C>T	c.(964-966)TTC>TTT	p.F322F	BAAT_uc004bbd.3_Silent_p.F322F	NM_001127610	NP_001121082	Q14032	BAAT_HUMAN	bile acid Coenzyme A: amino acid	322					acyl-CoA metabolic process|bile acid and bile salt transport|bile acid biosynthetic process|digestion|fatty acid metabolic process|glycine metabolic process	cytosol|peroxisomal matrix	carboxylesterase activity|glycine N-choloyltransferase activity|N-acyltransferase activity|palmitoyl-CoA hydrolase activity			ovary(1)|lung(1)|skin(1)	3		Acute lymphoblastic leukemia(62;0.0559)			Glycine(DB00145)	CTCCTACAATGAAGAGGAATT	0.468													21	80					0	0	0.00278032	0	0
BAAT	570	broad.mit.edu	37	9	104133253	104133253	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:104133253C>T	uc010mtd.2	-	2	543	c.434G>A	c.(433-435)GGC>GAC	p.G145D	BAAT_uc004bbd.3_Missense_Mutation_p.G145D	NM_001127610	NP_001121082	Q14032	BAAT_HUMAN	bile acid Coenzyme A: amino acid	145					acyl-CoA metabolic process|bile acid and bile salt transport|bile acid biosynthetic process|digestion|fatty acid metabolic process|glycine metabolic process	cytosol|peroxisomal matrix	carboxylesterase activity|glycine N-choloyltransferase activity|N-acyltransferase activity|palmitoyl-CoA hydrolase activity			ovary(1)|lung(1)|skin(1)	3		Acute lymphoblastic leukemia(62;0.0559)			Glycine(DB00145)	TCGAAGGCGGCCTTCTCGAAC	0.438													16	91					0	0	0.00316338	0	0
PPP3R2	5535	broad.mit.edu	37	9	104356958	104356958	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:104356958G>A	uc004bbr.2	-	1	326	c.255C>T	c.(253-255)TTC>TTT	p.F85F	GRIN3A_uc004bbp.1_Intron|GRIN3A_uc004bbq.1_Intron|PPP3R2_uc010mtf.1_Intron	NM_147180	NP_671709	Q96LZ3	CANB2_HUMAN	protein phosphatase 3 regulatory subunit B, beta	82	EF-hand 2.						calcium ion binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(62;0.0527)			Cyclosporine(DB00091)	CCTTGACGCTGAACTGGGAGG	0.552													58	86					0	0	0.00361006	0	0
SMC2	10592	broad.mit.edu	37	9	106876340	106876340	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:106876340C>T	uc004bbv.2	+	12	1798	c.1510C>T	c.(1510-1512)CCC>TCC	p.P504S	SMC2_uc004bbu.1_Missense_Mutation_p.P504S|SMC2_uc004bbw.2_Missense_Mutation_p.P504S|SMC2_uc011lvl.1_Missense_Mutation_p.P504S|SMC2_uc004bbx.2_Missense_Mutation_p.P504S	NM_001042551	NP_001036016	O95347	SMC2_HUMAN	structural maintenance of chromosomes 2	504	Potential.				cell division|mitotic chromosome condensation|symbiosis, encompassing mutualism through parasitism	condensin complex|cytoplasm|nuclear chromosome	ATP binding|protein heterodimerization activity			ovary(4)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|breast(1)	9						AGCCAGATTTCCCAATCTTCG	0.343													58	131					0	0	0.00361006	0	0
OR13F1	138805	broad.mit.edu	37	9	107266990	107266990	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:107266990G>A	uc011lvm.1	+	1	447	c.447G>A	c.(445-447)TGG>TGA	p.W149*		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	149	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						CTGGCTCCTGGATGACAGGCT	0.493													56	70					0	0	0.00361006	0	0
OR13C8	138802	broad.mit.edu	37	9	107331637	107331637	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:107331637C>T	uc011lvo.1	+	1	189	c.189C>T	c.(187-189)CTC>CTT	p.L63L		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	63	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ATTTCTTCCTCTGTAATCTTT	0.428													59	197					0	0	0.00361006	0	0
ABCA1	19	broad.mit.edu	37	9	107564394	107564394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:107564394G>A	uc004bcl.2	-	34	4952	c.4639C>T	c.(4639-4641)CCG>TCG	p.P1547S		NM_005502	NP_005493	O95477	ABCA1_HUMAN	ATP-binding cassette, sub-family A member 1	1547	Extracellular.				Cdc42 protein signal transduction|cellular lipid metabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|endosome transport|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|interleukin-1 beta secretion|intracellular cholesterol transport|lysosome organization|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|platelet dense granule organization|positive regulation of cAMP biosynthetic process|reverse cholesterol transport	integral to plasma membrane|membrane fraction|membrane raft|phagocytic vesicle	anion transmembrane transporter activity|apolipoprotein A-I receptor activity|ATP binding|ATPase activity|cholesterol transporter activity|phospholipid transporter activity|small GTPase binding|syntaxin-13 binding			large_intestine(4)|lung(4)|ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	17				OV - Ovarian serous cystadenocarcinoma(323;0.023)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TCTTGACTCGGAGGAAGTGCT	0.423													45	47					0	0	0.00361006	0	0
SLC44A1	23446	broad.mit.edu	37	9	108127850	108127850	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:108127850C>T	uc004bcn.2	+	11	1561	c.1340C>T	c.(1339-1341)TCT>TTT	p.S447F	SLC44A1_uc010mtk.1_Missense_Mutation_p.S447F|SLC44A1_uc004bco.1_Missense_Mutation_p.S239F	NM_080546	NP_536856	Q8WWI5	CTL1_HUMAN	CDW92 antigen	447	Mitochondrial intermembrane (Potential).					integral to membrane|mitochondrial outer membrane|plasma membrane	choline transmembrane transporter activity			breast(3)|ovary(1)	4					Choline(DB00122)	GCAAAAGGATCTTTCATTATC	0.363													23	79					0	0	0.00229938	0	0
PTPN3	5774	broad.mit.edu	37	9	112151520	112151520	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:112151520C>T	uc004bed.2	-	22	2358	c.2246G>A	c.(2245-2247)CGA>CAA	p.R749Q	PTPN3_uc004beb.2_Missense_Mutation_p.R618Q|PTPN3_uc004bec.2_Missense_Mutation_p.R573Q|PTPN3_uc010mtu.2_RNA|PTPN3_uc011lwg.1_Missense_Mutation_p.R704Q|PTPN3_uc011lwh.1_Missense_Mutation_p.R595Q|PTPN3_uc011lwd.1_Missense_Mutation_p.R217Q|PTPN3_uc011lwe.1_Missense_Mutation_p.R462Q|PTPN3_uc011lwf.1_Missense_Mutation_p.R417Q	NM_002829	NP_002820	P26045	PTN3_HUMAN	protein tyrosine phosphatase, non-receptor type	749	Tyrosine-protein phosphatase.				negative regulation of membrane protein ectodomain proteolysis|negative regulation of mitotic cell cycle	cytoplasm|cytoskeleton|internal side of plasma membrane	ATPase binding|cytoskeletal protein binding|phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(3)	3						TACCCGCCCTCGTTCTGTGAG	0.512													13	30					0	0	0.00244969	0	0
PALM2-AKAP2	445815	broad.mit.edu	37	9	112900290	112900290	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:112900290C>T	uc004bei.2	+	9	3354	c.3162C>T	c.(3160-3162)TCC>TCT	p.S1054S	PALM2-AKAP2_uc004bek.3_Silent_p.S822S|PALM2-AKAP2_uc004bej.3_Silent_p.S822S|PALM2-AKAP2_uc004bel.1_Silent_p.S632S|AKAP2_uc011lwi.1_Silent_p.S680S|AKAP2_uc004bem.2_Silent_p.S680S|PALM2-AKAP2_uc010mtw.1_Silent_p.S640S|AKAP2_uc011lwj.1_Silent_p.S591S|PALM2-AKAP2_uc004ben.2_Silent_p.S591S	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	591							enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						AAGCTGTGTCCAAAACCAGCA	0.542													6	32					0	0	0.00116845	0	0
SVEP1	79987	broad.mit.edu	37	9	113169812	113169812	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:113169812C>T	uc010mtz.2	-	38	8405	c.8068G>A	c.(8068-8070)GAA>AAA	p.E2690K	SVEP1_uc010mty.2_Missense_Mutation_p.E616K	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2690	Sushi 21.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CCCAGAAGTTCATATCCTGGA	0.453													48	161					0	0	0.00361006	0	0
SVEP1	79987	broad.mit.edu	37	9	113231282	113231282	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:113231282T>G	uc010mtz.2	-	17	3435	c.3098A>C	c.(3097-3099)AAG>ACG	p.K1033T	SVEP1_uc010mua.1_Missense_Mutation_p.K1033T	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1033					cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						GGGGCAAAGCTTGCACTCAAG	0.443													13	66					0	0	0.00316338	0	0
OR2K2	26248	broad.mit.edu	37	9	114090528	114090528	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:114090528G>A	uc011lwp.1	-	1	186	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_205859	NP_995581	Q8NGT1	OR2K2_HUMAN	olfactory receptor, family 2, subfamily K,	91	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GATTTCCAAGGAATAAGTACA	0.408													12	51					0	0	0.00185496	0	0
DNAJC25	548645	broad.mit.edu	37	9	114411979	114411979	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:114411979C>T	uc004bfl.2	+	3	792	c.736C>T	c.(736-738)CTG>TTG	p.L246L	DNAJC25-GNG10_uc004bfn.2_Intron|DNAJC25_uc004bfm.2_Silent_p.L124L	NM_001015882	NP_001015882	Q9H1X3	DJC25_HUMAN	DnaJ (Hsp40) homolog, subfamily C , member 25	246	Helical; (Potential).				protein folding	integral to membrane	heat shock protein binding|unfolded protein binding				0						TGATCTTCTCCTGTTTCAAAT	0.343													17	54					0	0	0.00400662	0	0
C9orf84	158401	broad.mit.edu	37	9	114464453	114464453	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:114464453C>T	uc004bfr.2	-	21	2964	c.2829G>A	c.(2827-2829)CTG>CTA	p.L943L	C9orf84_uc011lwt.1_RNA|C9orf84_uc004bfq.2_Silent_p.L904L|C9orf84_uc010mug.2_Silent_p.L854L	NM_173521	NP_775792	Q5VXU9	CI084_HUMAN	hypothetical protein LOC158401 isoform 1	943										ovary(2)	2						ATAATGCCATCAGCCTCATAA	0.284													17	35					0	0	0.000566183	0	0
ZNF883	169834	broad.mit.edu	37	9	115760208	115760208	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:115760208G>A	uc011lwy.1	-	5	1571	c.332C>T	c.(331-333)TCC>TTC	p.S111F		NM_001101338	NP_001094808	P0CG24	ZN883_HUMAN	hypothetical protein LOC169834	111	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATTTCTAAGGGATGACCTATG	0.383													16	49					0	0	0.00316338	0	0
FKBP15	23307	broad.mit.edu	37	9	115946644	115946644	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:115946644G>A	uc004bgs.2	-	17	1762	c.1644C>T	c.(1642-1644)TCC>TCT	p.S548S	FKBP15_uc010muu.1_Silent_p.S612S|FKBP15_uc004bgr.2_5'UTR|FKBP15_uc011lxc.1_Silent_p.S129S|FKBP15_uc011lxd.1_Silent_p.S480S|FKBP15_uc010mut.1_Silent_p.S416S	NM_015258	NP_056073	Q5T1M5	FKB15_HUMAN	FK506 binding protein 15, 133kDa	548	Potential.				endocytosis|protein folding	axon|early endosome	actin binding			ovary(3)	3						GAATAAGCATGGAATTGCCAG	0.373													9	12					0	0	0.000274275	0	0
KIF12	113220	broad.mit.edu	37	9	116857321	116857321	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:116857321G>A	uc004bif.2	-	8	925	c.687C>T	c.(685-687)ACC>ACT	p.T229T	KIF12_uc004big.2_RNA	NM_138424	NP_612433	Q96FN5	KIF12_HUMAN	kinesin family member 12	362					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						CCTGTGGTCGGGTGGTGACCC	0.637													8	40					0	0	0.000274275	0	0
COL27A1	85301	broad.mit.edu	37	9	116931714	116931714	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:116931714C>T	uc011lxl.1	+	3	1879	c.1879C>T	c.(1879-1881)CCG>TCG	p.P627S	COL27A1_uc004bii.2_RNA|COL27A1_uc010mvd.1_Missense_Mutation_p.P477S	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	627	Pro-rich.|Collagen-like 1.|Triple-helical region.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						GATGGGGCCTCCGGGACCCAA	0.632													17	66					0	0	0.00152264	0	0
PAPPA	5069	broad.mit.edu	37	9	118949875	118949875	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:118949875C>T	uc004bjn.2	+	2	1239	c.858C>T	c.(856-858)CTC>CTT	p.L286L	PAPPA_uc011lxp.1_Silent_p.L79L|PAPPA_uc011lxq.1_Silent_p.L79L	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	286	Metalloprotease.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						AGCTCCTCCTCCAGGAGAACT	0.572													14	71					0	0	0.00185496	0	0
PAPPA	5069	broad.mit.edu	37	9	118950233	118950233	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:118950233C>T	uc004bjn.2	+	2	1597	c.1216C>T	c.(1216-1218)CGC>TGC	p.R406C	PAPPA_uc011lxp.1_Missense_Mutation_p.R199C|PAPPA_uc011lxq.1_Missense_Mutation_p.R199C	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	406	Metalloprotease.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CTCCTCCCTTCGCCGCCGCCT	0.612													32	51					0	0	0.000953801	0	0
PAPPA	5069	broad.mit.edu	37	9	119115011	119115011	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:119115011G>A	uc004bjn.2	+	16	4372	c.3991G>A	c.(3991-3993)GAG>AAG	p.E1331K	PAPPA_uc011lxq.1_Missense_Mutation_p.E706K	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1331	Sushi 2.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						GACCTGCATGGAGGATGGGCT	0.587													25	56					0	0	0.00106085	0	0
ASTN2	23245	broad.mit.edu	37	9	119858380	119858380	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:119858380C>T	uc004bjs.1	-	5	1320	c.1219G>A	c.(1219-1221)GAT>AAT	p.D407N	ASTN2_uc004bjr.1_Missense_Mutation_p.D407N|ASTN2_uc004bjt.1_Missense_Mutation_p.D356N	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	407	Cytoplasmic (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						TGAGTTTCATCGTCTGCCTCT	0.527													9	41					0	0	0.000442599	0	0
DBC1	1620	broad.mit.edu	37	9	121929824	121929824	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:121929824C>T	uc004bkc.2	-	8	2280	c.1824G>A	c.(1822-1824)TGG>TGA	p.W608*		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	608					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						AAAATGTTTTCCACCGATTGC	0.557													39	106					0	0	0.00128727	0	0
DBC1	1620	broad.mit.edu	37	9	121930399	121930399	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:121930399C>T	uc004bkc.2	-	8	1705	c.1249G>A	c.(1249-1251)GGC>AGC	p.G417S		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	417					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GTGGTGCTGCCGTGGCACACG	0.612													8	16					0	0	0.000274275	0	0
GSN	2934	broad.mit.edu	37	9	124074660	124074660	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:124074660G>A	uc004blf.1	+	5	771	c.710G>A	c.(709-711)AGA>AAA	p.R237K	GSN_uc004bld.1_Missense_Mutation_p.R186K|GSN_uc010mvq.1_Missense_Mutation_p.R197K|GSN_uc010mvr.1_Missense_Mutation_p.R197K|GSN_uc010mvu.1_Missense_Mutation_p.R186K|GSN_uc010mvt.1_Missense_Mutation_p.R186K|GSN_uc010mvs.1_Missense_Mutation_p.R186K|GSN_uc004ble.1_Missense_Mutation_p.R186K|GSN_uc010mvv.1_Missense_Mutation_p.R186K|GSN_uc011lyh.1_Missense_Mutation_p.R203K|GSN_uc011lyi.1_Missense_Mutation_p.R186K|GSN_uc011lyj.1_Missense_Mutation_p.R210K|GSN_uc004blg.1_5'UTR	NM_000177	NP_000168	P06396	GELS_HUMAN	gelsolin isoform a precursor	237	Gelsolin-like 2.				actin filament polymerization|actin filament severing|barbed-end actin filament capping|cellular component disassembly involved in apoptosis|cilium morphogenesis	actin cytoskeleton|cytosol	actin binding|calcium ion binding|protein binding			breast(2)|ovary(1)	3						CGGTATGAAAGACTGAAGGCC	0.617													31	103					0	0	0.00327116	0	0
PTGS1	5742	broad.mit.edu	37	9	125140279	125140280	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:125140279_125140280CC>TT	uc004bmg.1	+	3	331_332	c.196_197CC>TT	c.(196-198)CCC>TTC	p.P66F	PTGS1_uc011lys.1_Missense_Mutation_p.P41F|PTGS1_uc010mwb.1_5'UTR|PTGS1_uc004bmf.1_Missense_Mutation_p.P66F|PTGS1_uc004bmh.1_5'UTR|PTGS1_uc011lyt.1_5'UTR	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	66	EGF-like.				cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	CTATTCCGGCCCCAACTGCACC	0.609													14	66					0	0	6.4e-05	0	0
OR1J1	347168	broad.mit.edu	37	9	125239944	125239944	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:125239944G>A	uc011lyu.1	-	1	262	c.262C>T	c.(262-264)CAG>TAG	p.Q88*	OR1J2_uc004bmj.1_Intron	NM_001004451	NP_001004451	Q8NGS3	OR1J1_HUMAN	olfactory receptor, family 1, subfamily J,	88	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						GCTAGGTGCTGAGTCTGCATG	0.428													52	58					0	0	0.00361006	0	0
PDCL	5082	broad.mit.edu	37	9	125582721	125582721	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:125582721G>A	uc004bmz.1	-	4	645	c.549C>T	c.(547-549)ATC>ATT	p.I183I	PDCL_uc004bna.2_3'UTR	NM_005388	NP_005379	Q13371	PHLP_HUMAN	phosducin-like	183					signal transduction|visual perception						0						TATGAACCATGATGACAATGC	0.463													36	67					0	0	0.000953801	0	0
STRBP	55342	broad.mit.edu	37	9	125901857	125901857	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:125901857G>A	uc004bns.2	-	14	1878	c.1448C>T	c.(1447-1449)TCA>TTA	p.S483L	STRBP_uc004bnt.2_Missense_Mutation_p.S301L|STRBP_uc004bnu.2_Missense_Mutation_p.S469L|STRBP_uc004bnv.2_Missense_Mutation_p.S483L|STRBP_uc004bnr.2_Intron	NM_018387	NP_060857	Q96SI9	STRBP_HUMAN	spermatid perinuclear RNA binding protein	483					multicellular organismal development	cytoplasm|nucleus	DNA binding			breast(1)|skin(1)	2						ATTATTGCTTGAGTTTGAAGA	0.274													27	32					0	0	0.000878237	0	0
CRB2	286204	broad.mit.edu	37	9	126133697	126133697	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:126133697G>A	uc004bnx.1	+	8	2368	c.2276G>A	c.(2275-2277)TGG>TAG	p.W759*	CRB2_uc004bnw.1_Nonsense_Mutation_p.W759*	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	759	Extracellular (Potential).|Laminin G-like 2.					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						AGCCAGCCCTGGGGTGGGCCC	0.667													25	97					0	0	0.000720815	0	0
DENND1A	57706	broad.mit.edu	37	9	126214555	126214555	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:126214555G>A	uc004bnz.1	-	17	1532	c.1299C>T	c.(1297-1299)TTC>TTT	p.F433F	DENND1A_uc011lzl.1_Silent_p.F208F|DENND1A_uc004bny.1_Silent_p.F172F|DENND1A_uc011lzm.1_Silent_p.F401F|DENND1A_uc004boa.1_Silent_p.F433F|DENND1A_uc004bob.1_Silent_p.F403F|DENND1A_uc004boc.2_Silent_p.F401F	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	433						cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						CAGTACTTACGAACTTGTAGA	0.323													21	87					0	0	0.00332997	0	0
OLFML2A	169611	broad.mit.edu	37	9	127563899	127563899	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:127563899C>T	uc004bov.2	+	5	989	c.876C>T	c.(874-876)ACC>ACT	p.T292T	OLFML2A_uc010mwr.1_Silent_p.T256T|OLFML2A_uc004bow.2_Silent_p.T78T	NM_182487	NP_872293	Q68BL7	OLM2A_HUMAN	olfactomedin-like 2A precursor	292											0						GGGGCTTCACCTACTACAAGG	0.637													25	14					0	0	0.00127121	0	0
PPP6C	5537	broad.mit.edu	37	9	127920583	127920583	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:127920583G>A	uc004bpg.3	-	4	537	c.316C>T	c.(316-318)CGT>TGT	p.R106C	PPP6C_uc010mwv.2_Missense_Mutation_p.R143C|PPP6C_uc010mww.2_Missense_Mutation_p.R84C|PPP6C_uc011lzr.1_Intron	NM_002721	NP_002712	O00743	PPP6_HUMAN	protein phosphatase 6, catalytic subunit isoform	106					G1/S transition of mitotic cell cycle|protein dephosphorylation	cytosol	metal ion binding|protein binding|protein serine/threonine phosphatase activity			ovary(1)|skin(1)	2						AGTGTAATACGATCAGGCCAT	0.353													114	115					0	0	0.00361006	0	0
ZBTB43	23099	broad.mit.edu	37	9	129594916	129594917	+	Missense_Mutation	DNP	TT	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:129594916_129594917TT>AA	uc004bql.2	+	3	401_402	c.128_129TT>AA	c.(127-129)ATT>AAA	p.I43K	ZBTB43_uc010mxf.2_Missense_Mutation_p.I43K	NM_014007	NP_054726	O43298	ZBT43_HUMAN	zinc finger and BTB domain containing 43	43	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CAAGGCCACATTTTCCGGGCAC	0.465													13	53					0	0	6.4e-05	0	0
ZNF79	7633	broad.mit.edu	37	9	130207219	130207219	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:130207219G>A	uc004bqw.3	+	5	1654	c.1240G>A	c.(1240-1242)GAG>AAG	p.E414K	ZNF79_uc011maf.1_Missense_Mutation_p.E390K|ZNF79_uc011mag.1_Missense_Mutation_p.E390K	NM_007135	NP_009066	Q15937	ZNF79_HUMAN	zinc finger protein 79	414					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						CCACACCGGGGAGAAGCCATA	0.483													43	51					0	0	0.00170553	0	0
DNM1	1759	broad.mit.edu	37	9	130982548	130982548	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:130982548C>T	uc011mau.1	+	6	864	c.777C>T	c.(775-777)TTC>TTT	p.F259F	DNM1_uc010mxr.2_Silent_p.F259F|DNM1_uc011mat.1_Silent_p.F259F	NM_004408	NP_004399	Q05193	DYN1_HUMAN	dynamin 1 isoform 1	259					receptor-mediated endocytosis	microtubule	GTP binding|GTPase activity			ovary(2)	2						GAAAGTTCTTCCTCTCCCATC	0.557													32	120					0	0	0.00327116	0	0
METTL11A	28989	broad.mit.edu	37	9	132397675	132397675	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:132397675C>T	uc004byd.1	+	4	798	c.604C>T	c.(604-606)CTG>TTG	p.L202L	METTL11A_uc010myw.1_RNA|METTL11A_uc011mbs.1_3'UTR|ASB6_uc004bye.1_3'UTR|ASB6_uc004byf.1_3'UTR|ASB6_uc004byg.1_3'UTR|ASB6_uc011mbt.1_3'UTR|ASB6_uc010myx.1_3'UTR	NM_014064	NP_054783	Q9BV86	NTM1A_HUMAN	methyltransferase like 11A	202					chromosome segregation|N-terminal peptidyl-proline dimethylation|N-terminal peptidyl-serine dimethylation|N-terminal peptidyl-serine trimethylation|spindle organization	nucleus	protein binding|protein methyltransferase activity				0						CCTCAGCCTCCTGGCCGAGGA	0.617													53	73					0	0	0.00361006	0	0
ASB6	140459	broad.mit.edu	37	9	132402973	132402973	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:132402973G>A	uc004byf.1	-	2	308	c.142C>T	c.(142-144)CGA>TGA	p.R48*	ASB6_uc004bye.1_5'UTR|ASB6_uc004byg.1_Nonsense_Mutation_p.R48*|ASB6_uc011mbt.1_Intron|ASB6_uc010myx.1_Nonsense_Mutation_p.R48*	NM_017873	NP_060343	Q9NWX5	ASB6_HUMAN	ankyrin repeat and SOCS box-containing 6 isoform	48					intracellular signal transduction	cytoplasm					0		Ovarian(14;0.00556)				ACAAGGATTCGGCTCTCCTCG	0.622													22	24					0	0	0.00229938	0	0
LAMC3	10319	broad.mit.edu	37	9	133920952	133920952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:133920952C>T	uc004caa.1	+	8	1522	c.1424C>T	c.(1423-1425)GCT>GTT	p.A475V		NM_006059	NP_006050	Q9Y6N6	LAMC3_HUMAN	laminin, gamma 3 precursor	475	Laminin EGF-like 4.				cell adhesion	basement membrane|membrane	structural molecule activity			ovary(2)|pancreas(1)	3	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.06e-05)|Epithelial(140;0.000551)		CACAATCCAGCTGGCTGCAGC	0.607													26	31					0	0	0.000878237	0	0
LAMC3	10319	broad.mit.edu	37	9	133961098	133961098	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:133961098G>A	uc004caa.1	+	25	4316	c.4218G>A	c.(4216-4218)AAG>AAA	p.K1406K	LAMC3_uc010mze.1_Silent_p.K94K	NM_006059	NP_006050	Q9Y6N6	LAMC3_HUMAN	laminin, gamma 3 precursor	1406	Domain II and I.				cell adhesion	basement membrane|membrane	structural molecule activity			ovary(2)|pancreas(1)	3	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.06e-05)|Epithelial(140;0.000551)		TGTTGGCCAAGGACAGTGCCA	0.637													6	34					0	0	0.00116845	0	0
LAMC3	10319	broad.mit.edu	37	9	133962954	133962954	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:133962954C>T	uc004caa.1	+	26	4420	c.4322C>T	c.(4321-4323)TCC>TTC	p.S1441F	LAMC3_uc010mze.1_Missense_Mutation_p.S129F	NM_006059	NP_006050	Q9Y6N6	LAMC3_HUMAN	laminin, gamma 3 precursor	1441	Domain II and I.|Potential.				cell adhesion	basement membrane|membrane	structural molecule activity			ovary(2)|pancreas(1)	3	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.06e-05)|Epithelial(140;0.000551)		CAACAGGCGTCCCAGCAGGTG	0.657													14	56					0	0	0.00244969	0	0
ADAMTS13	11093	broad.mit.edu	37	9	136320464	136320464	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:136320464C>T	uc004cdv.3	+	25	3751	c.3307C>T	c.(3307-3309)CAG>TAG	p.Q1103*	ADAMTS13_uc004cdp.3_Nonsense_Mutation_p.Q330*|ADAMTS13_uc004cdt.1_Nonsense_Mutation_p.Q1103*|ADAMTS13_uc004cdu.1_Nonsense_Mutation_p.Q1072*|ADAMTS13_uc004cdw.3_Nonsense_Mutation_p.Q1103*|ADAMTS13_uc004cdx.3_Nonsense_Mutation_p.Q1072*|ADAMTS13_uc004cdz.3_Nonsense_Mutation_p.Q773*|ADAMTS13_uc004cea.1_5'Flank|ADAMTS13_uc004ceb.3_5'Flank	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1103	TSP type-1 8.				cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		CCTCGGACCCCAGGCCCAGGC	0.667													41	148					0	0	0.00285205	0	0
SARDH	1757	broad.mit.edu	37	9	136599167	136599167	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:136599167C>T	uc004cep.3	-	2	263	c.129G>A	c.(127-129)CAG>CAA	p.Q43Q	SARDH_uc004ceo.2_Silent_p.Q43Q|SARDH_uc011mdn.1_Silent_p.Q43Q|SARDH_uc011mdo.1_Intron	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	43					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		TCAGGGTCCGCTGATATGGCA	0.687													11	49					0	0	0.00136819	0	0
COL5A1	1289	broad.mit.edu	37	9	137622301	137622301	+	Missense_Mutation	SNP	G	A	A	rs148288567		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:137622301G>A	uc004cfe.2	+	7	1526	c.1144G>A	c.(1144-1146)GAC>AAC	p.D382N		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	382	Nonhelical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CAGCACCGCCGACACCTCCAA	0.622													12	65					0	0	0.00136819	0	0
COL5A1	1289	broad.mit.edu	37	9	137623417	137623417	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:137623417G>A	uc004cfe.2	+	8	1622	c.1240G>A	c.(1240-1242)GAG>AAG	p.E414K		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	414	Nonhelical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GAACCTTGACGAGAActacta	0.547													36	88					0	0	0.00111076	0	0
COL5A1	1289	broad.mit.edu	37	9	137653774	137653774	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:137653774G>A	uc004cfe.2	+	19	2321	c.1939G>A	c.(1939-1941)GAC>AAC	p.D647N		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	647	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		TTCCTAGGGTGACCCTGGTCC	0.567													34	55					0	0	0.00170553	0	0
GLT6D1	360203	broad.mit.edu	37	9	138516270	138516270	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:138516270G>A	uc010nbd.1	-	5	758	c.504C>T	c.(502-504)TTC>TTT	p.F168F		NM_182974	NP_892019	Q7Z4J2	GL6D1_HUMAN	glycosyltransferase 6 domain containing 1	168	Lumenal (Potential).				carbohydrate metabolic process	integral to membrane	transferase activity, transferring hexosyl groups			ovary(1)	1		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;4.3e-07)|Epithelial(140;1.58e-06)|all cancers(34;5.36e-05)		TGCTGAAGAGGAAGTCCACCT	0.597													28	31					0	0	0.001512	0	0
SOHLH1	402381	broad.mit.edu	37	9	138590849	138590849	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:138590849C>T	uc004cgl.2	-	2	250	c.189G>A	c.(187-189)AGG>AGA	p.R63R	SOHLH1_uc010nbe.2_Silent_p.R63R	NM_001012415	NP_001012415	Q5JUK2	SOLH1_HUMAN	spermatogenesis and oogenesis specific basic	63	Basic motif.				cell differentiation|multicellular organismal development|oogenesis|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			breast(1)|central_nervous_system(1)	2		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.66e-07)|Epithelial(140;1.11e-06)|all cancers(34;6.45e-05)		ACCTGCGCTCCCTCTCGCTGA	0.697													32	43					0	0	0.00327116	0	0
LCN15	389812	broad.mit.edu	37	9	139656668	139656668	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:139656668C>T	uc004cjd.2	-	5	517	c.492G>A	c.(490-492)AAG>AAA	p.K164K		NM_203347	NP_976222	Q6UWW0	LCN15_HUMAN	lipocalin 15 precursor	164					lipid metabolic process	extracellular region	binding|transporter activity				0						CCATCATGTCCTTGGGGAGCC	0.647													5	1					0	0	0.00198382	0	0
ABCA2	20	broad.mit.edu	37	9	139915991	139915991	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:139915991G>A	uc011mem.1	-	7	895	c.747C>T	c.(745-747)ATC>ATT	p.I249I	ABCA2_uc011mel.1_Silent_p.I250I|ABCA2_uc004ckl.1_Silent_p.I180I|ABCA2_uc004ckm.1_Silent_p.I280I|ABCA2_uc004cko.1_Silent_p.I26I|ABCA2_uc010nca.2_Silent_p.I180I	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	249					cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		GCACAGTGAGGATCCGGCCCA	0.697													4	5					0	0	0.000602214	0	0
EXD3	54932	broad.mit.edu	37	9	140245817	140245817	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:140245817G>A	uc004cmp.2	-	13	1533	c.1337C>T	c.(1336-1338)TCC>TTC	p.S446F	C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Missense_Mutation_p.S126F|EXD3_uc004cmq.1_RNA	NM_017820	NP_060290	Q8N9H8	MUT7_HUMAN	exonuclease 3'-5' domain containing 3	446					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding				0						CACCAGCCGGGAAAAGGCCTG	0.672													11	26					0	0	0.00185496	0	0
PNPLA7	375775	broad.mit.edu	37	9	140400467	140400467	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:140400467C>T	uc004cnf.2	-	12	1556	c.1219G>A	c.(1219-1221)GAC>AAC	p.D407N	C9orf167_uc011mew.1_Intron|PNPLA7_uc011mfa.1_Intron|PNPLA7_uc010ncj.1_Missense_Mutation_p.D432N	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	407				FLHSDEHPGSSVASKSRKSVMVAEIPSTVSQHSESHTDETL ASRKSDAIFRAAKKDLLTLMKLEDSSLLDG -> LCLLPQC LGGLPPTDTSVYSSASSDCCGCSMPVLCIMGHKPHVTVDT (in Ref. 1; BAC86509).	lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		GGGTGCTCGTCCGAGTGCAGG	0.652													14	19					0	0	0.00074312	0	0
CACNA1B	774	broad.mit.edu	37	9	140943685	140943685	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:140943685C>T	uc004cog.2	+	24	3773	c.3628C>T	c.(3628-3630)CAC>TAC	p.H1210Y	CACNA1B_uc011mfd.1_Missense_Mutation_p.H740Y|CACNA1B_uc004coi.2_Missense_Mutation_p.H420Y	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1210	Cytoplasmic (Potential).|III.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	ACTGCTGCTTCACCCTGGAGC	0.453													17	76					0	0	0.00278032	0	0
CACNA1B	774	broad.mit.edu	37	9	141010018	141010018	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr9:141010018C>T	uc004cog.2	+	41	5809	c.5664C>T	c.(5662-5664)TCC>TCT	p.S1888S	CACNA1B_uc004coi.2_Silent_p.S1100S	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1888	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	GTCCTGTGTCCCTGTTCCACC	0.602													58	84					0	0	0.00361006	0	0
CRLF2	64109	broad.mit.edu	37	X	1327758	1327758	+	RNA	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:1327758G>A	uc004cpm.1	-	2		c.123C>T						Q9HC73	CRLF2_HUMAN	Homo sapiens mRNA for IL-XR, complete cds.							extracellular region|integral to membrane|plasma membrane	receptor activity			haematopoietic_and_lymphoid_tissue(7)	7		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				TCACCTGCACGGTTTCTAAAT	0.478			Mis|T	P2RY8|IGH@	B-ALL|Downs associated ALL								81	109					0	0	0.00361006	0	0
ASMT	438	broad.mit.edu	37	X	1752114	1752115	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:1752114_1752115CC>AA	uc004cqd.2	+	8	863_864	c.718_719CC>AA	c.(718-720)CCA>AAA	p.P240K	ASMT_uc010ncy.2_Missense_Mutation_p.P240K|ASMT_uc004cqe.2_Intron	NM_004043	NP_004034	P46597	HIOM_HUMAN	acetylserotonin O-methyltransferase	212					melatonin biosynthetic process|translation	cytosol	acetylserotonin O-methyltransferase activity|S-methyltransferase activity			skin(1)	1		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TTTTGACATCCCAGAAGTGGTG	0.53													11	305					0	0	6.4e-05	0	0
ARSE	415	broad.mit.edu	37	X	2867429	2867429	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:2867429C>T	uc004crc.3	-	6	1020	c.770G>A	c.(769-771)AGA>AAA	p.R257K	ARSE_uc011mhi.1_Missense_Mutation_p.R203K|ARSE_uc011mhh.1_Missense_Mutation_p.R282K	NM_000047	NP_000038	P51690	ARSE_HUMAN	arylsulfatase E precursor	257					skeletal system development	Golgi stack	arylsulfatase activity|metal ion binding			ovary(1)|central_nervous_system(1)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GGTGTGGTTTCTCATCAGAAA	0.532													42	3					0	0	0.00222228	0	0
ARSF	416	broad.mit.edu	37	X	3030406	3030406	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:3030406G>A	uc004cre.1	+	11	1803	c.1582G>A	c.(1582-1584)GAT>AAT	p.D528N	ARSF_uc004crf.1_Missense_Mutation_p.D528N	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	528						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GCCCCTCCATGATTTTGTGAT	0.557													44	1					0	0	0.00285205	0	0
MXRA5	25878	broad.mit.edu	37	X	3238709	3238709	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:3238709G>A	uc004crg.3	-	5	5174	c.5017C>T	c.(5017-5019)CCT>TCT	p.P1673S		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1673						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				AATGGGAGAGGAATTGTTGTA	0.413													80	72					0	0	0.00361006	0	0
SHROOM2	357	broad.mit.edu	37	X	9900626	9900626	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:9900626C>T	uc004csu.1	+	6	3393	c.3303C>T	c.(3301-3303)TCC>TCT	p.S1101S	SHROOM2_uc004csv.2_5'UTR|SHROOM2_uc011mic.1_5'UTR|SHROOM2_uc004csw.1_5'UTR	NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	1101					apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				CCCCTGCGTCCCTGGATGTGT	0.687													9	20					0	0	0.000274275	0	0
FRMPD4	9758	broad.mit.edu	37	X	12736325	12736325	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:12736325A>T	uc004cuz.1	+	16	3886	c.3380A>T	c.(3379-3381)GAA>GTA	p.E1127V	FRMPD4_uc011mij.1_Missense_Mutation_p.E1119V	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	1127					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						AGGGAGGCCGAAGGGAAGGAA	0.527													71	106					0	0	0.00361006	0	0
FANCB	2187	broad.mit.edu	37	X	14868780	14868780	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:14868780G>A	uc004cwg.1	-	7	1611	c.1343C>T	c.(1342-1344)CCT>CTT	p.P448L	FANCB_uc004cwh.1_Missense_Mutation_p.P448L	NM_001018113	NP_001018123	Q8NB91	FANCB_HUMAN	Fanconi anemia complementation group B	448					DNA repair	nucleoplasm				lung(1)	1	Hepatocellular(33;0.183)					ACCACAAAGAGGAACAAGACA	0.294								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				15	17					0	0	0.00316338	0	0
REPS2	9185	broad.mit.edu	37	X	17065603	17065603	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:17065603C>T	uc004cxv.1	+	6	1076	c.905C>T	c.(904-906)TCA>TTA	p.S302L	REPS2_uc004cxw.1_Missense_Mutation_p.S301L|REPS2_uc011miw.1_Missense_Mutation_p.S161L	NM_004726	NP_004717	Q8NFH8	REPS2_HUMAN	RALBP1 associated Eps domain containing 2	302	EH 2.				epidermal growth factor receptor signaling pathway|protein complex assembly	cytoplasm	calcium ion binding|protein binding			skin(2)|central_nervous_system(1)	3	Hepatocellular(33;0.183)					TCTTTCATTTCAGGTAAGAAT	0.483													65	3					0	0	0.00361006	0	0
PHKA2	5256	broad.mit.edu	37	X	18942232	18942232	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:18942232G>A	uc004cyv.3	-	17	2165	c.1735C>T	c.(1735-1737)CAT>TAT	p.H579Y	PHKA2_uc010nfg.1_RNA	NM_000292	NP_000283	P46019	KPB2_HUMAN	phosphorylase kinase, alpha 2 (liver)	579					glucose metabolic process|glycogen catabolic process	cytosol|phosphorylase kinase complex|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(1)|central_nervous_system(1)	2	Hepatocellular(33;0.183)					ACAGCAGAATGAATGTCTGAG	0.358													44	55					0	0	0.00321405	0	0
ZNF645	158506	broad.mit.edu	37	X	22291568	22291568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:22291568C>T	uc004dai.1	+	1	509	c.460C>T	c.(460-462)CGT>TGT	p.R154C		NM_152577	NP_689790	Q8N7E2	ZN645_HUMAN	zinc finger protein 645	154						intracellular	zinc ion binding			lung(1)|pancreas(1)	2						TGAAAAAGTTCGTCCTCATAT	0.448													32	32					0	0	0.00209593	0	0
DCAF8L2	347442	broad.mit.edu	37	X	27766203	27766203	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:27766203G>A	uc011mjy.1	+	1	1278	c.1191G>A	c.(1189-1191)AGG>AGA	p.R397R		NM_001136533	NP_001130005			DDB1 and CUL4 associated factor 8-like 2											central_nervous_system(1)|pancreas(1)	2						ATGACCAGAGGAAAATTGATA	0.393													34	0					0	0	0.00375469	0	0
CXorf22	170063	broad.mit.edu	37	X	35971789	35971789	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:35971789G>A	uc004ddj.2	+	7	1186	c.1127G>A	c.(1126-1128)GGA>GAA	p.G376E	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	376										large_intestine(1)|lung(1)|ovary(1)	3						GAGTCCGTAGGAAGTAAAGAT	0.323													34	1					0	0	0.00327116	0	0
CXorf22	170063	broad.mit.edu	37	X	35985768	35985768	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:35985768A>C	uc004ddj.2	+	10	1692	c.1633A>C	c.(1633-1635)AAG>CAG	p.K545Q	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	545										large_intestine(1)|lung(1)|ovary(1)	3						TCCCACGGGAAAGTTTGTGGT	0.363													15	0					0	0	0.00400662	0	0
BCOR	54880	broad.mit.edu	37	X	39933481	39933481	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:39933481G>A	uc004den.3	-	4	1410	c.1118C>T	c.(1117-1119)TCA>TTA	p.S373L	BCOR_uc004dep.3_Missense_Mutation_p.S373L|BCOR_uc004deo.3_Missense_Mutation_p.S373L|BCOR_uc004dem.3_Missense_Mutation_p.S373L|BCOR_uc004deq.3_Missense_Mutation_p.S373L	NM_001123385	NP_001116857	Q6W2J9	BCOR_HUMAN	BCL-6 interacting corepressor isoform c	373					heart development|histone H2A monoubiquitination|negative regulation of bone mineralization|negative regulation of histone H3-K36 methylation|negative regulation of histone H3-K4 methylation|negative regulation of tooth mineralization|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|palate development|specification of axis polarity|transcription, DNA-dependent	nucleus	heat shock protein binding|histone deacetylase binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						GTATGGCTTTGACAGGGCAAC	0.602													34	2					0	0	0.00327116	0	0
ZNF41	7592	broad.mit.edu	37	X	47308035	47308035	+	Silent	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:47308035T>G	uc004dhs.3	-	4	1327	c.1260A>C	c.(1258-1260)ACA>ACC	p.T420T	ZNF41_uc004dhu.3_Silent_p.T412T|ZNF41_uc004dht.3_Silent_p.T292T|ZNF41_uc004dhv.3_Silent_p.T388T|ZNF41_uc004dhw.3_Silent_p.T380T|ZNF41_uc004dhy.3_Silent_p.T378T|ZNF41_uc004dhx.3_Silent_p.T378T|ZNF41_uc011mlm.1_Silent_p.T292T	NM_153380	NP_700359	P51814	ZNF41_HUMAN	zinc finger protein 41	420						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3		all_lung(315;0.000129)				GTTTTTCTCCTGTATGAATTC	0.403													44	2					0	0	0.00321405	0	0
KCND1	3750	broad.mit.edu	37	X	48826440	48826440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:48826440C>T	uc004dlx.1	-	1	1812	c.239G>A	c.(238-240)GGC>GAC	p.G80D	KCND1_uc004dlw.1_5'Flank	NM_004979	NP_004970	Q9NSA2	KCND1_HUMAN	potassium voltage-gated channel, Shal-related	80	Cytoplasmic (Potential).					voltage-gated potassium channel complex	metal ion binding|voltage-gated potassium channel activity			ovary(2)|lung(1)	3						GAAGTACTCGCCTGAGTCAGC	0.587													6	14					0	0	0.00307968	0	0
CACNA1F	778	broad.mit.edu	37	X	49061645	49061646	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:49061645_49061646GA>AT	uc004dnb.2	-	48	5947_5948	c.5885_5886TC>AT	c.(5884-5886)TTC>TAT	p.F1962Y	CACNA1F_uc010nip.2_Missense_Mutation_p.F1951Y	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	1962	Cytoplasmic (Potential).				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	CCTCCTCATCGAAGCGGGAGAG	0.604													13	0					0	0	6.4e-05	0	0
HUWE1	10075	broad.mit.edu	37	X	53622156	53622156	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:53622156G>A	uc004dsp.2	-	30	3773	c.3371C>T	c.(3370-3372)CCC>CTC	p.P1124L	HUWE1_uc004dsn.2_5'Flank	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	1124				P -> L (in Ref. 1 and 5).	base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						CCTGAATCGGGGAGTAGGTGT	0.463													50	3					0	0	0.00361006	0	0
WNK3	65267	broad.mit.edu	37	X	54259292	54259292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:54259292C>T	uc004dtd.1	-	21	5088	c.4649G>A	c.(4648-4650)CGA>CAA	p.R1550Q	WNK3_uc004dtc.1_Missense_Mutation_p.R1597Q	NM_001002838	NP_001002838	Q9BYP7	WNK3_HUMAN	WNK lysine deficient protein kinase 3 isoform 2	1550					intracellular protein kinase cascade|positive regulation of establishment of protein localization in plasma membrane|positive regulation of peptidyl-threonine phosphorylation|positive regulation of rubidium ion transmembrane transporter activity|positive regulation of rubidium ion transport|positive regulation of sodium ion transmembrane transporter activity|positive regulation of sodium ion transport|protein autophosphorylation	adherens junction|tight junction	ATP binding|protein binding|protein serine/threonine kinase activity|rubidium ion transmembrane transporter activity|sodium ion transmembrane transporter activity			lung(4)|ovary(3)|kidney(2)|central_nervous_system(2)	11						GGGGCGGCTTCGAAGTTTGCT	0.408													45	50					0	0	0.00361006	0	0
ITIH5L	347365	broad.mit.edu	37	X	54784275	54784275	+	Silent	SNP	T	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:54784275T>G	uc004dtj.2	-	8	2262	c.2232A>C	c.(2230-2232)CTA>CTC	p.L744L		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	744	Pro-rich.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						TCTGGTGTGATAGAGAGCCGG	0.517													85	5					0	0	0.00361006	0	0
PAGE3	139793	broad.mit.edu	37	X	55287011	55287011	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:55287011C>T	uc004dul.2	-	4	584	c.275G>A	c.(274-276)GGA>GAA	p.G92E	PAGE3_uc011mon.1_RNA	NM_001017931	NP_001017931			P antigen family, member 3 (prostate												0						CAGAAATTCTCCCTTGACATT	0.393													8	10					0	0	0.000673444	0	0
ZC3H12B	340554	broad.mit.edu	37	X	64717044	64717044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:64717044G>A	uc010nko.2	+	2	617	c.608G>A	c.(607-609)GGA>GAA	p.G203E		NM_001010888	NP_001010888	Q5HYM0	ZC12B_HUMAN	zinc finger CCCH-type containing 12B	203							endonuclease activity|nucleic acid binding|zinc ion binding			lung(1)|kidney(1)|pancreas(1)	3						TCCTGCAGAGGAATACAACTT	0.408													14	2					0	0	0.00316338	0	0
FAM155B	27112	broad.mit.edu	37	X	68748926	68748926	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:68748926G>A	uc004dxk.2	+	2	1000	c.952G>A	c.(952-954)GAG>AAG	p.E318K		NM_015686	NP_056501	O75949	F155B_HUMAN	transmembrane protein 28	318						integral to membrane				ovary(1)|breast(1)	2						ATACTGCCTGGAGGTGCAGAC	0.587													10	15					0	0	0.000978159	0	0
EDA	1896	broad.mit.edu	37	X	69255270	69255270	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:69255270C>T	uc004dxs.2	+	8	1229	c.987C>T	c.(985-987)TTC>TTT	p.F329F	EDA_uc004dxr.2_Silent_p.F327F|EDA_uc011mpj.1_Silent_p.F324F	NM_001399	NP_001390	Q92838	EDA_HUMAN	ectodysplasin A isoform EDA-A1	329	Extracellular (Potential).				cell differentiation|ectoderm development|immune response|positive regulation of NF-kappaB transcription factor activity|signal transduction	collagen|cytoskeleton|membrane fraction	tumor necrosis factor receptor binding			ovary(2)|large_intestine(1)	3						AGAAGCCCTTCCTGCAGTGCA	0.547													9	12					0	0	0.000442599	0	0
NHSL2	340527	broad.mit.edu	37	X	71359742	71359742	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:71359742G>A	uc011mqa.1	+	6	2344	c.2344G>A	c.(2344-2346)GAT>AAT	p.D782N	NHSL2_uc004eak.1_Missense_Mutation_p.D416N|NHSL2_uc010nli.2_Missense_Mutation_p.D551N	NM_001013627	NP_001013649	Q5HYW2	NHSL2_HUMAN	NHS-like 2	782											0	Renal(35;0.156)					ACCCAACCTGGATCTGTCTGG	0.498													13	3					0	0	0.00316338	0	0
XIST	7503	broad.mit.edu	37	X	73072305	73072305	+	RNA	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:73072305C>T	uc004ebm.1	-	1		c.284G>A				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						AGAAAAATTCCTTAAATATTA	0.308													9	0					0	0	0.000673444	0	0
KIAA2022	340533	broad.mit.edu	37	X	73961340	73961340	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:73961340C>T	uc004eby.2	-	3	3669	c.3052G>A	c.(3052-3054)GGC>AGC	p.G1018S		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1018					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TCATCATCGCCATCCTTTTCA	0.463													23	2					0	0	0.00229938	0	0
KIAA2022	340533	broad.mit.edu	37	X	73961524	73961524	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:73961524G>A	uc004eby.2	-	3	3485	c.2868C>T	c.(2866-2868)ACC>ACT	p.T956T		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	956					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						ATGGGAGTTGGGTATCTTGCA	0.438													49	5					0	0	0.00361006	0	0
ZDHHC15	158866	broad.mit.edu	37	X	74636998	74636998	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:74636998C>T	uc004ecg.2	-	10	1369	c.891G>A	c.(889-891)ATG>ATA	p.M297I	ZDHHC15_uc004ech.2_Missense_Mutation_p.M288I|ZDHHC15_uc011mqo.1_RNA	NM_144969	NP_659406	Q96MV8	ZDH15_HUMAN	zinc finger, DHHC-type containing 15 isoform 1	297						integral to membrane	zinc ion binding			ovary(2)	2						TCATAGACCTCATAGGGAAGG	0.443													40	35					0	0	0.00148497	0	0
ZCCHC5	203430	broad.mit.edu	37	X	77913437	77913437	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:77913437G>A	uc004edc.1	-	2	777	c.481C>T	c.(481-483)CCC>TCC	p.P161S		NM_152694	NP_689907	Q8N8U3	ZCHC5_HUMAN	zinc finger, CCHC domain containing 5	161	Pro-rich.						nucleic acid binding|zinc ion binding			ovary(1)	1						ATATTTGGGGGATCCTGGGGT	0.567													31	1					0	0	0.00283554	0	0
FAM46D	169966	broad.mit.edu	37	X	79698282	79698282	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:79698282G>A	uc004edl.1	+	5	578	c.244G>A	c.(244-246)GAT>AAT	p.D82N	FAM46D_uc004edm.1_Missense_Mutation_p.D82N	NM_152630	NP_689843	Q8NEK8	FA46D_HUMAN	hypothetical protein LOC169966	82										lung(2)	2						CAGCTATAAGGATCTGGACGT	0.383													5	10					0	0	0.00116845	0	0
Unknown	0	broad.mit.edu	37	X	80185707	80185707	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:80185707G>A	uc004eec.1	+	1	780	c.606G>A	c.(604-606)GTG>GTA	p.V202V						SubName: Full=cDNA FLJ16670 fis, clone THYMU3001133, highly similar to Voltage-dependent anion-selective channel protein 1; SubName: Full=Voltage-dependent anion channel 1, isoform CRA_a;																		CGGCTAAAGTGAACAACTCCA	0.498													73	3					0	0	0.00361006	0	0
KLHL4	56062	broad.mit.edu	37	X	86773011	86773011	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:86773011G>A	uc004efb.2	+	1	297	c.115G>A	c.(115-117)GAA>AAA	p.E39K	KLHL4_uc004efa.2_Missense_Mutation_p.E39K	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	39						cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						TCTTCAGCAGGAAGGATATGA	0.498													20	19					0	0	0.00121646	0	0
KLHL4	56062	broad.mit.edu	37	X	86888766	86888766	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:86888766G>A	uc004efb.2	+	8	1749	c.1567G>A	c.(1567-1569)GGA>AGA	p.G523R	KLHL4_uc004efa.2_Missense_Mutation_p.G523R	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	523	Kelch 2.					cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						CACTCTTGAAGGACCAATGTA	0.403													13	19					0	0	0.00400662	0	0
SRPX2	27286	broad.mit.edu	37	X	99922337	99922337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:99922337G>A	uc004egb.2	+	9	1508	c.1028G>A	c.(1027-1029)CGA>CAA	p.R343Q		NM_014467	NP_055282	O60687	SRPX2_HUMAN	sushi-repeat-containing protein, X-linked 2	343					angiogenesis|cell motility|cell-cell adhesion|positive regulation of cell migration involved in sprouting angiogenesis|regulation of phosphorylation	cytoplasm|extracellular region	receptor binding			ovary(2)	2						GAGAAACAGCGACTCCTCATC	0.478													27	32					0	0	0.00178596	0	0
TAF7L	54457	broad.mit.edu	37	X	100533048	100533048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:100533048G>A	uc004ehb.2	-	8	836	c.824C>T	c.(823-825)GCC>GTC	p.A275V	TAF7L_uc004eha.2_Missense_Mutation_p.A189V|TAF7L_uc004ehc.1_Missense_Mutation_p.A189V	NM_024885	NP_079161	Q5H9L4	TAF7L_HUMAN	TATA box binding protein-associated factor, RNA	275					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription initiation from RNA polymerase II promoter	cytoplasm|transcription factor TFIID complex	binding			breast(1)	1						GGTACTTACGGCTTCAGCATC	0.453													18	24					0	0	0.00152264	0	0
ZMAT1	84460	broad.mit.edu	37	X	101139513	101139513	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:101139513G>A	uc004eim.2	-	2	3871	c.373C>T	c.(373-375)CAT>TAT	p.H125Y	ZMAT1_uc011mrl.1_Missense_Mutation_p.H296Y|ZMAT1_uc004ein.2_Missense_Mutation_p.H125Y|ZMAT1_uc011mrm.1_Missense_Mutation_p.H125Y	NM_032441	NP_115817	Q5H9K5	ZMAT1_HUMAN	zinc finger, matrin type 1 isoform 3	125						nucleus	zinc ion binding			ovary(1)	1						TTCTTTGAATGAGGTAACTGC	0.383													22	3					0	0	0.00188189	0	0
GPRASP1	9737	broad.mit.edu	37	X	101909135	101909135	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:101909135C>T	uc004ejj.3	+	5	1095	c.294C>T	c.(292-294)CCC>CCT	p.P98P	GPRASP1_uc004eji.3_Silent_p.P98P|GPRASP1_uc010nod.2_Silent_p.P98P	NM_014710	NP_055525	Q5JY77	GASP1_HUMAN	G protein-coupled receptor associated sorting	98						cytoplasm	protein binding			ovary(1)|lung(1)	2						GGGCTCAGCCCAGGTTTGGTG	0.478													125	6					0	0	0.00361006	0	0
MID2	11043	broad.mit.edu	37	X	107169963	107169963	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:107169963C>T	uc004enl.2	+	10	2441	c.1868C>T	c.(1867-1869)TCC>TTC	p.S623F	MID2_uc004enk.2_Missense_Mutation_p.S593F	NM_012216	NP_036348	Q9UJV3	TRIM1_HUMAN	midline 2 isoform 1	623	B30.2/SPRY.					centrosome|microtubule	ligase activity|zinc ion binding			ovary(1)	1						AAGAATGCCTCCTCATGGGTC	0.468													17	15					0	0	0.00400662	0	0
COL4A5	1287	broad.mit.edu	37	X	107938566	107938566	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:107938566C>T	uc004enz.1	+	51	5093	c.4891C>T	c.(4891-4893)CGT>TGT	p.R1631C	COL4A5_uc011mso.1_Missense_Mutation_p.R1628C|COL4A5_uc011msp.1_Missense_Mutation_p.R307C	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	1625	Collagen IV NC1.		Missing (in APSX).		axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						GGAAGAGTTTCGTTCAGCTCC	0.493									Alport_syndrome_with_Diffuse_Leiomyomatosis				23	33					0	0	0.00127121	0	0
CHRDL1	91851	broad.mit.edu	37	X	109931860	109931860	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:109931860C>T	uc004eou.3	-	9	1299	c.950G>A	c.(949-951)GGA>GAA	p.G317E	CHRDL1_uc004eov.2_Missense_Mutation_p.G311E|CHRDL1_uc004eow.2_Missense_Mutation_p.G316E|CHRDL1_uc010nps.2_Missense_Mutation_p.G316E|CHRDL1_uc004eot.2_Missense_Mutation_p.G237E|CHRDL1_uc011mss.1_Missense_Mutation_p.G231E	NM_001143981	NP_001137453	Q9BU40	CRDL1_HUMAN	chordin-like 1 isoform 1 precursor	310	VWFC 3.				BMP signaling pathway|cell differentiation|nervous system development|ossification	extracellular region					0						GCAGCATTTTCCGTCTATTTT	0.443													48	53					0	0	0.00361006	0	0
CAPN6	827	broad.mit.edu	37	X	110494210	110494210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:110494210C>T	uc004epc.1	-	8	1261	c.1093G>A	c.(1093-1095)GAT>AAT	p.D365N	CAPN6_uc011msu.1_Missense_Mutation_p.D110N	NM_014289	NP_055104	Q9Y6Q1	CAN6_HUMAN	calpain 6	365	Domain III.				microtubule bundle formation|proteolysis|regulation of cytoskeleton organization	perinuclear region of cytoplasm|spindle microtubule	calcium-dependent cysteine-type endopeptidase activity|microtubule binding			ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|skin(1)	6						ATCAGGGGATCATCATCCACA	0.473													87	91					0	0	0.00361006	0	0
AMOT	154796	broad.mit.edu	37	X	112022744	112022744	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:112022744G>A	uc004epr.2	-	10	2638	c.2638C>T	c.(2638-2640)CCC>TCC	p.P880S	AMOT_uc004eps.2_Missense_Mutation_p.P471S|AMOT_uc011mtc.1_Missense_Mutation_p.P120S	NM_001113490	NP_001106962	Q4VCS5	AMOT_HUMAN	angiomotin isoform 1	880					actin cytoskeleton organization|cell-cell junction assembly|negative regulation of angiogenesis|negative regulation of vascular permeability|positive regulation of blood vessel endothelial cell migration|positive regulation of cell size|positive regulation of stress fiber assembly|regulation of cell migration	actin filament|cell surface|cytoplasm|endocytic vesicle|external side of plasma membrane|integral to membrane|lamellipodium|ruffle|stress fiber|tight junction|tight junction	angiostatin binding|protein binding|receptor activity			ovary(1)	1						acagagatgggagcaacagct	0.254													9	8					0	0	0.000442599	0	0
SLC6A14	11254	broad.mit.edu	37	X	115588792	115588792	+	Silent	SNP	A	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:115588792A>G	uc004eqi.2	+	13	1736	c.1632A>G	c.(1630-1632)TCA>TCG	p.S544S		NM_007231	NP_009162	Q9UN76	S6A14_HUMAN	solute carrier family 6 (amino acid	544	Helical; Name=11; (Potential).				cellular amino acid metabolic process|response to toxin	integral to membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)|pancreas(1)	3					L-Proline(DB00172)	TTATCTGGTCATTGGTGCAAT	0.368													59	4					0	0	0.00361006	0	0
SLC6A14	11254	broad.mit.edu	37	X	115590032	115590032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:115590032C>T	uc004eqi.2	+	14	1944	c.1840C>T	c.(1840-1842)CGT>TGT	p.R614C		NM_007231	NP_009162	Q9UN76	S6A14_HUMAN	solute carrier family 6 (amino acid	614	Cytoplasmic (Potential).				cellular amino acid metabolic process|response to toxin	integral to membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)|pancreas(1)	3					L-Proline(DB00172)	GGAACAACATCGTGGGGAAAG	0.408													45	5					0	0	0.00361006	0	0
CXorf61	203413	broad.mit.edu	37	X	115593146	115593146	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:115593146G>A	uc004eqj.1	-	2	224	c.104C>T	c.(103-105)TCA>TTA	p.S35L		NM_001017978	NP_001017978	Q5H943	KKLC1_HUMAN	chromosome X open reading frame 61	35	Extracellular (Potential).					integral to membrane|plasma membrane					0						AAGAGCAGTTGAATTTGATGA	0.373													18	25					0	0	0.00278032	0	0
KIAA1210	57481	broad.mit.edu	37	X	118223173	118223174	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:118223173_118223174CC>TT	uc004era.3	-	11	2019_2020	c.2019_2020GG>AA	c.(2017-2022)GTGGAA>GTAAAA	p.E674K		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	674										ovary(4)|skin(1)	5						GAAAGGCTTTCCACCATCAGTG	0.465													10	16					0	0	6.4e-05	0	0
DCAF12L1	139170	broad.mit.edu	37	X	125685875	125685875	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:125685875G>A	uc004eul.2	-	1	968	c.717C>T	c.(715-717)CTC>CTT	p.L239L		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	239										skin(3)|ovary(1)	4						CATATACGGGGAGACCCACCT	0.667													17	16					0	0	0.00074312	0	0
XPNPEP2	7512	broad.mit.edu	37	X	128887159	128887159	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:128887159T>A	uc004eut.1	+	11	1286	c.1042T>A	c.(1042-1044)TCC>ACC	p.S348T		NM_003399	NP_003390	O43895	XPP2_HUMAN	X-prolyl aminopeptidase 2, membrane-bound	348					cellular process|proteolysis	anchored to membrane|plasma membrane	aminopeptidase activity|metal ion binding|metalloexopeptidase activity				0						AGACACCTACTCCCCAGTGAT	0.582													35	52					0	0	0.00222228	0	0
SASH3	54440	broad.mit.edu	37	X	128924974	128924974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:128924974G>A	uc011mun.1	+	4	541	c.359G>A	c.(358-360)AGC>AAC	p.S120N	SASH3_uc004euu.2_Missense_Mutation_p.S120N|SASH3_uc011muo.1_Missense_Mutation_p.S37N	NM_018990	NP_061863	O75995	SASH3_HUMAN	SAM and SH3 domain containing 3	120										ovary(2)|pancreas(1)	3						AGCCTGGACAGCCCTGGCCCT	0.617													55	3					0	0	0.00361006	0	0
ARHGAP36	158763	broad.mit.edu	37	X	130215884	130215884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:130215884C>T	uc004evz.2	+	2	590	c.245C>T	c.(244-246)CCT>CTT	p.P82L	ARHGAP36_uc004ewa.2_Missense_Mutation_p.P70L|ARHGAP36_uc004ewb.2_Missense_Mutation_p.P51L|ARHGAP36_uc004ewc.2_5'Flank	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	82					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						GAATTCAAACCTGACAGAGGT	0.582													59	3					0	0	0.00361006	0	0
FRMD7	90167	broad.mit.edu	37	X	131212235	131212235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:131212235C>T	uc004ewn.2	-	12	1988	c.1810G>A	c.(1810-1812)GGG>AGG	p.G604R	FRMD7_uc011muy.1_Missense_Mutation_p.G589R	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	604					regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					AATTCTGACCCAAAAGGAAAA	0.423													18	23					0	0	0.000958276	0	0
FRMD7	90167	broad.mit.edu	37	X	131212788	131212788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:131212788C>T	uc004ewn.2	-	12	1435	c.1257G>A	c.(1255-1257)ATG>ATA	p.M419I	FRMD7_uc011muy.1_Missense_Mutation_p.M404I	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	419					regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					AGACAGGGTCCATATAAATAA	0.378													100	3					0	0	0.00361006	0	0
FRMD7	90167	broad.mit.edu	37	X	131214289	131214289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:131214289C>T	uc004ewn.2	-	10	1089	c.911G>A	c.(910-912)CGA>CAA	p.R304Q	FRMD7_uc011muy.1_Missense_Mutation_p.R289Q	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	304					regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					CCTTTGGGTTCGTCCACTATC	0.368													22	1					0	0	0.00278032	0	0
SAGE1	55511	broad.mit.edu	37	X	134994479	134994479	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:134994479G>A	uc004ezh.2	+	19	2689	c.2522_splice	c.e19-1	p.N841_splice	SAGE1_uc010nry.1_3'UTR|SAGE1_uc011mvv.1_Splice_Site_p.N465_splice	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1											ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					AATATCTTCAGATTATGAAAG	0.313													57	3					0	0	0.00361006	0	0
CDR1	1038	broad.mit.edu	37	X	139866342	139866342	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:139866342G>A	uc004fbg.1	-	1	382	c.190C>T	c.(190-192)CTG>TTG	p.L64L	uc004fbf.1_RNA	NM_004065	NP_004056	P51861	CDR1_HUMAN	cerebellar degeneration-related protein 1,	64	11.|23 X 6 AA approximate repeats.										0	Acute lymphoblastic leukemia(192;7.65e-05)	Lung SC(4;0.051)				AGGTCTTCCAGGAAATCCGTG	0.443													55	5					0	0	0.00361006	0	0
MAGEC3	139081	broad.mit.edu	37	X	140985541	140985541	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:140985541A>T	uc011mwp.1	+	8	1855	c.1855A>T	c.(1855-1857)ATT>TTT	p.I619F	MAGEC3_uc004fbs.2_3'UTR|MAGEC3_uc010nsj.2_3'UTR	NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	619	MAGE 2.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCAGGCCATAATTGACACCAC	0.483													43	1					0	0	0.00321405	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993259	140993259	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:140993259G>A	uc004fbt.2	+	4	355	c.69G>A	c.(67-69)CAG>CAA	p.Q23Q	MAGEC1_uc010nsl.1_5'UTR	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	23							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					AGAGTCCTCAGAGTTGTCCTG	0.522										HNSCC(15;0.026)			53	2					0	0	0.00361006	0	0
UBE2NL	389898	broad.mit.edu	37	X	142967326	142967326	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:142967326G>A	uc004fca.2	+	1	154	c.124G>A	c.(124-126)GAA>AAA	p.E42K		NM_001012989	NP_001013007	Q5JXB2	UE2NL_HUMAN	ubiquitin-conjugating enzyme E2N-like	42							acid-amino acid ligase activity				0	Acute lymphoblastic leukemia(192;6.56e-05)					CATTGCTGGGGAATCAAAGGA	0.473													43	37					0	0	0.00285205	0	0
AFF2	2334	broad.mit.edu	37	X	148037775	148037775	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:148037775C>G	uc004fcp.2	+	11	2679	c.2200C>G	c.(2200-2202)CCT>GCT	p.P734A	AFF2_uc004fcq.2_Missense_Mutation_p.P724A|AFF2_uc004fcr.2_Missense_Mutation_p.P695A|AFF2_uc011mxb.1_Missense_Mutation_p.P699A|AFF2_uc004fcs.2_Missense_Mutation_p.P701A|AFF2_uc011mxc.1_Missense_Mutation_p.P375A	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	734					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					CAAAGTCCTGCCTCCGTGCAT	0.468													46	48					0	0	0.00361006	0	0
AFF2	2334	broad.mit.edu	37	X	148038032	148038032	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:148038032C>T	uc004fcp.2	+	11	2936	c.2457C>T	c.(2455-2457)CTC>CTT	p.L819L	AFF2_uc004fcq.2_Silent_p.L809L|AFF2_uc004fcr.2_Silent_p.L780L|AFF2_uc011mxb.1_Silent_p.L784L|AFF2_uc004fcs.2_Silent_p.L786L|AFF2_uc011mxc.1_Silent_p.L460L	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	819					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					ACAGCTCACTCCATGCAGCAC	0.532													33	40					0	0	0.00283554	0	0
MTMR1	8776	broad.mit.edu	37	X	149919206	149919206	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:149919206C>T	uc004fei.2	+	13	1682	c.1547C>T	c.(1546-1548)CCT>CTT	p.P516L	MTMR1_uc011mya.1_Missense_Mutation_p.P422L|MTMR1_uc004feh.1_Missense_Mutation_p.P524L|MTMR1_uc004fej.2_RNA|MTMR1_uc010ntf.2_RNA	NM_003828	NP_003819	Q13613	MTMR1_HUMAN	myotubularin-related protein 1	516	Myotubularin phosphatase.					plasma membrane	protein tyrosine phosphatase activity			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TTTAAGTTTCCTTCAGCATTC	0.328													37	23					0	0	0.00428921	0	0
CNGA2	1260	broad.mit.edu	37	X	150912180	150912180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:150912180G>A	uc004fey.1	+	7	1429	c.1205G>A	c.(1204-1206)AGC>AAC	p.S402N		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	402	Extracellular (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CGAAAGGTCAGCAAGGGGATG	0.498													29	34					0	0	0.00178596	0	0
GABRA3	2556	broad.mit.edu	37	X	151424268	151424268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:151424268G>A	uc010ntk.1	-	5	773	c.533C>T	c.(532-534)ACC>ATC	p.T178I		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	178	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	ATAGAGGAGGGTTCCGTTGTC	0.478													19	36					0	0	0.00152264	0	0
GABRA3	2556	broad.mit.edu	37	X	151532952	151532952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:151532952C>T	uc010ntk.1	-	2	331	c.91G>A	c.(91-93)GAA>AAA	p.E31K		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	31	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CGTCTTGATTCCCCTTGACCA	0.448													75	5					0	0	0.00361006	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900195	151900195	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:151900195C>T	uc010ntp.2	-	3	960	c.606G>A	c.(604-606)CTG>CTA	p.L202L	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.L202L	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	202	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GGACGATTATCAGGAGGCCTG	0.582													56	62					0	0	0.00361006	0	0
ABCD1	215	broad.mit.edu	37	X	153001939	153001939	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:153001939C>T	uc004fif.2	+	4	1764	c.1365C>T	c.(1363-1365)GTC>GTT	p.V455V	ABCD1_uc004fig.2_5'Flank	NM_000033	NP_000024	P33897	ABCD1_HUMAN	ATP-binding cassette, sub-family D (ALD), member	455					fatty acid beta-oxidation using acyl-CoA oxidase|peroxisomal membrane transport|peroxisome organization	cytosol|integral to peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|identical protein binding|peroxisomal fatty-acyl-CoA transporter activity				0	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GGTCTGGTGTCCGTGTGGAGG	0.627													17	16					0	0	0.00074312	0	0
HCFC1	3054	broad.mit.edu	37	X	153223333	153223333	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:153223333G>A	uc004fjp.2	-	12	2561	c.2033C>T	c.(2032-2034)TCC>TTC	p.S678F		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	678	Interaction with SIN3A.				cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GCCCAGATTGGAAATCTAAAA	0.557													50	2					0	0	0.00361006	0	0
HCFC1	3054	broad.mit.edu	37	X	153224144	153224144	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:153224144G>A	uc004fjp.2	-	10	2207	c.1679C>T	c.(1678-1680)CCC>CTC	p.P560L		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	560					cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CGAGGAAGGGGGGATCTTCTG	0.657													13	22					0	0	0.00136819	0	0
MECP2	4204	broad.mit.edu	37	X	153296706	153296707	+	Missense_Mutation	DNP	GG	AA	AA	rs61749710		TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:153296706_153296707GG>AA	uc004fjv.2	-	4	798_799	c.572_573CC>TT	c.(571-573)CCC>CTT	p.P191L	MECP2_uc004fjw.2_Missense_Mutation_p.P203L	NM_004992	NP_004983	P51608	MECP2_HUMAN	methyl CpG binding protein 2 isoform 1	191	A.T hook 1.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	heterochromatin|nucleus	double-stranded methylated DNA binding|protein domain specific binding|protein N-terminus binding|transcription corepressor activity				0	all_cancers(53;3.7e-16)|all_epithelial(53;3.44e-10)|all_lung(58;2.06e-07)|Lung NSC(58;2.72e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CGCTCCCTTTGGGGCGTCCCCG	0.614													87	2					0	0	6.4e-05	0	0
OPN1MW	2652	broad.mit.edu	37	X	153458976	153458976	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:153458976C>T	uc004fkb.2	+	5	904	c.822C>T	c.(820-822)GTC>GTT	p.V274V		NM_000513	NP_000504	P04001	OPSG_HUMAN	opsin 1 (cone pigments), medium-wave-sensitive	274	Helical; Name=6; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity				0	all_cancers(53;1.83e-16)|all_epithelial(53;2.73e-10)|all_lung(58;6.39e-07)|Lung NSC(58;8.37e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TGGTGATGGTCCTGGCATTCT	0.577													50	115					0	0	0.00361006	0	0
F8	2157	broad.mit.edu	37	X	154175986	154175986	+	Silent	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:154175986C>T	uc004fmt.2	-	13	2271	c.2100G>A	c.(2098-2100)TCG>TCA	p.S700S		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	700	F5/8 type A 2.|Plastocyanin-like 4.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	GGTTTTCCATCGACATGAAGA	0.413													40	52					0	0	0.00361006	0	0
VAMP7	6845	broad.mit.edu	37	X	155171569	155171569	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:155171569C>T	uc004fnr.2	+	8	791	c.617C>T	c.(616-618)TCA>TTA	p.S206L	VAMP7_uc004fnt.2_Missense_Mutation_p.S165L|VAMP7_uc011naa.1_Missense_Mutation_p.S167L|VAMP7_uc011nab.1_Missense_Mutation_p.S105L|VAMP7_uc004fns.2_Silent_p.F183F|VAMP7_uc011nac.1_Missense_Mutation_p.S139L	NM_005638	NP_005629	P51809	VAMP7_HUMAN	vesicle-associated membrane protein 7 isoform 1	206	Helical; Anchor for type IV membrane protein; (Potential).				calcium ion-dependent exocytosis|endosome to lysosome transport|eosinophil degranulation|ER to Golgi vesicle-mediated transport|neutrophil degranulation|phagocytosis, engulfment|post-Golgi vesicle-mediated transport|protein transport|vesicle fusion	endoplasmic reticulum membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|phagocytic vesicle membrane|plasma membrane|SNARE complex|transport vesicle membrane	protein binding				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					ATCATTGTTTCACCTCTCTGT	0.353													32	34					0	0	0.00148497	0	0
IL9R	3581	broad.mit.edu	37	X	155233513	155233513	+	Silent	SNP	G	A	A			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:155233513G>A	uc004fnv.1	+	4	605	c.426G>A	c.(424-426)CGG>CGA	p.R142R	IL9R_uc010nvn.2_Silent_p.R121R|IL9R_uc004fnu.1_Missense_Mutation_p.G187E	NM_002186	NP_002177	Q01113	IL9R_HUMAN	interleukin 9 receptor precursor	142	Extracellular (Potential).				cell proliferation	extracellular space|integral to plasma membrane	interleukin-9 receptor activity				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					ACCTGCCCCGGAGACACGGTG	0.617													24	19					0	0	0.001512	0	0
PTPN14	5784	broad.mit.edu	37	1	214557011	214557019	+	In_Frame_Del	DEL	CTCCCGGAG	-	-	rs142125075	byFrequency	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:214557011_214557019delCTCCCGGAG	uc001hkk.1	-	13	2450_2458	c.2179_2187delCTCCGGGAG	c.(2179-2187)CTCCGGGAGdel	p.LRE727del	PTPN14_uc010pty.1_In_Frame_Del_p.LRE628del	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	727_729					lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		ACTCCATCTTCTCCCGGAGCATGGGGATC	0.617													9	67	---	---	---	---					
PCNXL2	80003	broad.mit.edu	37	1	233121997	233121997	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr1:233121997delG	uc001hvl.2	-	33	6316	c.6081delC	c.(6079-6081)TCCfs	p.S2027fs	PCNXL2_uc001hvk.1_Frame_Shift_Del_p.S679fs|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	2027	Ser-rich.					integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				AGCTCAGGGTGGAGCTGGTGG	0.652													2	4	---	---	---	---					
CACNA2D4	93589	broad.mit.edu	37	12	1995401	1995401	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr12:1995401delA	uc001qjp.2	-	8	1212	c.981delT	c.(979-981)ATTfs	p.I327fs	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Intron	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	327	VWFA.|Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		CTATGATATTAATGAAGTCAT	0.493													31	29	---	---	---	---					
ADAM6	8755	broad.mit.edu	37	14	106090958	106090967	+	RNA	DEL	GAGTCCAGCA	-	-			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr14:106090958_106090967delGAGTCCAGCA	uc010tyt.1	-	3648		c.62444_62453delTGCTGGACTC			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron					Parts of antibodies, mostly variable regions.												0						GGAGCCGTCGGAGTCCAGCACGGGAGGCGT	0.605													10	462	---	---	---	---					
FBN1	2200	broad.mit.edu	37	15	48797337	48797339	+	In_Frame_Del	DEL	GTT	-	-			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr15:48797337_48797339delGTT	uc001zwx.1	-	16	2171_2173	c.1843_1845delAAC	c.(1843-1845)AACdel	p.N615del		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	615	EGF-like 10; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TTTCACACTCGTTAATGTCTGTG	0.424													12	31	---	---	---	---					
TP53	7157	broad.mit.edu	37	17	7578384	7578401	+	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	-	-	rs138525931	by1000genomes	TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr17:7578384_7578401delGCAGCGCTCATGGTGGGG	uc002gim.2	-	5	723_740	c.529_546delCCCCACCATGAGCGCTGC	c.(529-546)CCCCACCATGAGCGCTGCdel	p.PHHERC177del	TP53_uc002gig.1_In_Frame_Del_p.PHHERC177del|TP53_uc002gih.2_In_Frame_Del_p.PHHERC177del|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_In_Frame_Del_p.PHHERC45del|TP53_uc010cng.1_In_Frame_Del_p.PHHERC45del|TP53_uc002gii.1_In_Frame_Del_p.PHHERC45del|TP53_uc010cnh.1_In_Frame_Del_p.PHHERC177del|TP53_uc010cni.1_In_Frame_Del_p.PHHERC177del|TP53_uc002gij.2_In_Frame_Del_p.PHHERC177del|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_In_Frame_Del_p.PHHERC84del|TP53_uc002gio.2_In_Frame_Del_p.PHHERC45del|TP53_uc010vug.1_In_Frame_Del_p.PHHERC138del	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	177_182	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		C -> R (in sporadic cancers; somatic mutation).|C -> S (in sporadic cancers; somatic mutation).|C -> Y (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.H179R(98)|p.H179Y(74)|p.H179L(31)|p.R181H(20)|p.H179Q(17)|p.P177L(17)|p.P177R(15)|p.R181P(14)|p.H179N(13)|p.E180*(13)|p.R181C(13)|p.H178fs*69(10)|p.H179D(10)|p.P177P(10)|p.H178Y(8)|p.P177_C182delPHHERC(8)|p.P177S(8)|p.C182S(8)|p.0?(7)|p.H178P(6)|p.E180K(5)|p.H178fs*3(5)|p.H178Q(5)|p.C182*(5)|p.H178D(4)|p.C176_R181delCPHHER(3)|p.H179P(3)|p.H178N(3)|p.P177H(3)|p.E180D(3)|p.R175_E180delRCPHHE(3)|p.R181L(3)|p.R174fs*24(3)|p.H179fs*68(2)|p.H179H(2)|p.R174fs*1(2)|p.H178H(2)|p.P177fs*3(2)|p.C182Y(2)|p.C182C(2)|p.C182R(2)|p.R181R(2)|p.V173fs*59(2)|p.V173fs*69(1)|p.R175_H178>X(1)|p.E180G(1)|p.E180fs*67(1)|p.E180Q(1)|p.R174fs*70(1)|p.E171_H179delEVVRRCPHH(1)|p.H178fs*6(1)|p.H178L(1)|p.R174fs*3(1)|p.V172_E180delVVRRCPHHE(1)|p.R174_H179delRRCPHH(1)|p.E171fs*1(1)|p.H179del(1)|p.P177fs*4(1)|p.H168fs*69(1)|p.E180>DGRCPHQ(1)|p.H178del(1)|p.P177I(1)|p.E180_S183del(1)|p.P177T(1)|p.K164_P219del(1)|p.R49P(1)|p.E171fs*61(1)|p.V173fs*23(1)|p.C176_P177delCP(1)|p.P177fs*69(1)|p.R42fs*24(1)|p.R88P(1)|p.C182fs*4(1)|p.R174_E180>K(1)|p.P177_E180delPHHE(1)|p.C182fs*65(1)|p.C176fs*65(1)|p.R181G(1)|p.C176fs*68(1)|p.R174_H178>S(1)|p.R181>XXXXXXX(1)|p.H178_H179>QY(1)|p.?(1)|p.R81fs*24(1)|p.P177_H179delPHH(1)|p.E180fs*6(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTC	0.638		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			11	11	---	---	---	---					
KIAA0355	9710	broad.mit.edu	37	19	34840010	34840011	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr19:34840010_34840011delTC	uc002nvd.3	+	12	3636_3637	c.2777_2778delTC	c.(2776-2778)TTCfs	p.F926fs		NM_014686	NP_055501	O15063	K0355_HUMAN	hypothetical protein LOC9710	926										ovary(1)	1	Esophageal squamous(110;0.162)					GACAGCTTGTTCTCCATGTTTT	0.559													15	54	---	---	---	---					
RFTN1	23180	broad.mit.edu	37	3	16419362	16419362	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr3:16419362delT	uc003cay.2	-	5	971	c.689delA	c.(688-690)GAGfs	p.E230fs	RFTN1_uc010hes.2_Frame_Shift_Del_p.E194fs	NM_015150	NP_055965	Q14699	RFTN1_HUMAN	raft-linking protein	230						plasma membrane				ovary(3)|central_nervous_system(1)	4						GAGGGGCACCTCCCCTCTGGG	0.637													23	22	---	---	---	---					
NMU	10874	broad.mit.edu	37	4	56465332	56465337	+	In_Frame_Del	DEL	CTTCTT	-	-			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr4:56465332_56465337delCTTCTT	uc003hbc.2	-	9	607_612	c.501_506delAAGAAG	c.(499-507)GGAAGAAGG>GGG	p.RR168del	NMU_uc003hbd.1_RNA|NMU_uc010igv.1_RNA|NMU_uc010igw.1_In_Frame_Del_p.RR83del|NMU_uc010igx.1_RNA	NM_006681	NP_006672	P48645	NMU_HUMAN	neuromedin U precursor	168_169					neuropeptide signaling pathway	extracellular region					0	Lung NSC(11;0.00256)|all_epithelial(27;0.075)|Glioma(25;0.08)|all_neural(26;0.101)	all_hematologic(202;0.103)	LUSC - Lung squamous cell carcinoma(4;6.72e-08)|Lung(4;6.22e-07)|Epithelial(7;0.00559)	LUSC - Lung squamous cell carcinoma(721;0.0115)		CCCTGCTGACCTTCTTCCATTCCGTG	0.301													7	27	---	---	---	---					
PCLO	27445	broad.mit.edu	37	7	82545344	82545344	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chr7:82545344delA	uc003uhx.2	-	7	12247	c.11958delT	c.(11956-11958)CTTfs	p.L3986fs	PCLO_uc003uhv.2_Frame_Shift_Del_p.L3986fs|PCLO_uc010lec.2_Frame_Shift_Del_p.L951fs	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3917					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GTGCTATCATAAGGGGTTGGT	0.398													80	175	---	---	---	---					
TFE3	7030	broad.mit.edu	37	X	48888962	48888980	+	Frame_Shift_Del	DEL	GGCTCTCCAGGTCTTTGGA	-	-			TCGA-EE-A29L-06A-12D-A196-08	TCGA-EE-A29L-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a626c740-1caf-4fb9-9fd0-cc54b541f21f	733ad89a-8fd6-4293-8a62-ab83f1d1e8c7	g.chrX:48888962_48888980delGGCTCTCCAGGTCTTTGGA	uc004dmb.3	-	9	1454_1472	c.1216_1234delTCCAAAGACCTGGAGAGCC	c.(1216-1236)TCCAAAGACCTGGAGAGCCGGfs	p.S406fs	TFE3_uc004dmc.3_Frame_Shift_Del_p.S301fs	NM_006521	NP_006512	P19532	TFE3_HUMAN	transcription factor E3	406_412	Leucine-zipper.				humoral immune response|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding		ASPSCR1/TFE3(161)|PRCC/TFE3(25)|SFPQ/TFE3(6)|NONO/TFE3(2)|CLTC/TFE3(2)	soft_tissue(120)|kidney(76)|central_nervous_system(1)	197						GATCGCTGCCGGCTCTCCAGGTCTTTGGAGCGCTGCTGC	0.607			T	SFPQ|ASPSCR1|PRCC|NONO|CLTC	papillary renal|alveolar soft part sarcoma|renal								5	3	---	---	---	---					
