Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SAMD11	148398	broad.mit.edu	37	1	861352	861353	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:861352_861353CC>TT	uc001abw.1	+	2	111_112	c.31_32CC>TT	c.(31-33)CCG>TTG	p.P11L	SAMD11_uc001abv.1_Missense_Mutation_p.P11L	NM_152486	NP_689699	Q96NU1	SAM11_HUMAN	sterile alpha motif domain containing 11	11						nucleus					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.74e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000472)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		GGTGCATCCTCCGATCTGCGAC	0.644													12	63					0	0	0.004672	0	0
PLEKHG5	57449	broad.mit.edu	37	1	6534523	6534523	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:6534523G>A	uc001ano.1	-	7	696	c.595C>T	c.(595-597)CTT>TTT	p.L199F	PLEKHG5_uc001ann.1_Missense_Mutation_p.L180F|PLEKHG5_uc001anq.1_Missense_Mutation_p.L220F|PLEKHG5_uc001anp.1_Missense_Mutation_p.L220F|PLEKHG5_uc001anj.1_5'Flank|PLEKHG5_uc009vma.1_5'UTR|PLEKHG5_uc010nzr.1_Missense_Mutation_p.L212F|PLEKHG5_uc001ank.1_Missense_Mutation_p.L143F|PLEKHG5_uc009vmb.1_Missense_Mutation_p.L143F|PLEKHG5_uc001anl.1_Missense_Mutation_p.L143F|PLEKHG5_uc001anm.1_Missense_Mutation_p.L143F	NM_001042663	NP_001036128	O94827	PKHG5_HUMAN	pleckstrin homology domain containing family G	199					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			liver(1)	1	Ovarian(185;0.02)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;5.51e-35)|GBM - Glioblastoma multiforme(13;3.57e-27)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		TTGACACGAAGGTAGTGTCCC	0.617													4	20					0	0	0.001168	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18807904	18807904	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:18807904G>A	uc001bax.2	+	1	481	c.429G>A	c.(427-429)CAG>CAA	p.Q143Q	KLHDC7A_uc009vpg.2_5'UTR	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	143						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GCCCCAGCCAGGAAACCAGAA	0.637													8	20					0	0	0.003080	0	0
EPHA8	2046	broad.mit.edu	37	1	22915620	22915620	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:22915620C>T	uc001bfx.1	+	5	1361	c.1236C>T	c.(1234-1236)ATC>ATT	p.I412I	EPHA8_uc001bfw.2_Silent_p.I412I	NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	412	Extracellular (Potential).|Fibronectin type-III 1.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		CCTTCTGGATCGAGGCCGTCA	0.662													7	24					0	0	0.001984	0	0
EPHB2	2048	broad.mit.edu	37	1	23235527	23235527	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:23235527C>T	uc009vqj.1	+	13	2510	c.2365C>T	c.(2365-2367)CCC>TCC	p.P789S	EPHB2_uc001bge.2_Missense_Mutation_p.P790S|EPHB2_uc001bgf.2_Missense_Mutation_p.P789S|EPHB2_uc010odu.1_Missense_Mutation_p.P731S	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	789	Cytoplasmic (Potential).|Protein kinase.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		CGGAAAGATCCCCATCCGCTG	0.458									Hereditary_Prostate_Cancer				5	24					0	0	0.001168	0	0
HNRNPR	10236	broad.mit.edu	37	1	23648120	23648120	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:23648120C>T	uc001bgr.3	-	7	871	c.712G>A	c.(712-714)GGA>AGA	p.G238R	HNRNPR_uc001bgp.3_Missense_Mutation_p.G238R|HNRNPR_uc009vqk.2_Missense_Mutation_p.G137R|HNRNPR_uc001bgs.3_Missense_Mutation_p.G137R|HNRNPR_uc010odw.1_Missense_Mutation_p.G200R|HNRNPR_uc010odx.1_Missense_Mutation_p.G78R|HNRNPR_uc009vql.2_Missense_Mutation_p.G99R	NM_005826	NP_005817	O43390	HNRPR_HUMAN	heterogeneous nuclear ribonucleoprotein R	238	RRM 1.					catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding			upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00394)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;6.83e-27)|Colorectal(126;6.01e-08)|COAD - Colon adenocarcinoma(152;3.32e-06)|GBM - Glioblastoma multiforme(114;6.69e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|KIRC - Kidney renal clear cell carcinoma(1967;0.00357)|STAD - Stomach adenocarcinoma(196;0.0131)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0875)|LUSC - Lung squamous cell carcinoma(448;0.19)		ATGCACACTCCAAGGTGTTTA	0.403													36	134					0	0	0.001485	0	0
LYPLA2	11313	broad.mit.edu	37	1	24120985	24120985	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:24120985C>T	uc001bht.2	+	9	661	c.540C>T	c.(538-540)CCC>CCT	p.P180P	LYPLA2_uc001bhr.2_Silent_p.P175P|LYPLA2_uc001bhs.1_3'UTR|LYPLA2_uc001bhu.2_Silent_p.P157P	NM_007260	NP_009191	O95372	LYPA2_HUMAN	lysophospholipase II	180					fatty acid metabolic process	cytoplasm	hydrolase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Breast(348;0.0044)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;1.79e-24)|Colorectal(126;4.8e-08)|COAD - Colon adenocarcinoma(152;2.83e-06)|GBM - Glioblastoma multiforme(114;4.22e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000946)|KIRC - Kidney renal clear cell carcinoma(1967;0.00314)|STAD - Stomach adenocarcinoma(196;0.0123)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0827)|LUSC - Lung squamous cell carcinoma(448;0.184)		CCATGGTGCCCGTACGGTTTG	0.617													8	32					0	0	0.004482	0	0
IL22RA1	58985	broad.mit.edu	37	1	24447491	24447491	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:24447491G>A	uc001biq.1	-	7	1568	c.1529C>T	c.(1528-1530)TCC>TTC	p.S510F	IL22RA1_uc010oeg.1_Missense_Mutation_p.S442F|IL22RA1_uc009vrb.1_Missense_Mutation_p.S374F|IL22RA1_uc010oeh.1_3'UTR	NM_021258	NP_067081	Q8N6P7	I22R1_HUMAN	interleukin 22 receptor, alpha 1 precursor	510	Cytoplasmic (Potential).					integral to membrane	interferon receptor activity			skin(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000992)|all_lung(284;0.00138)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;3.84e-24)|Colorectal(126;6.43e-08)|COAD - Colon adenocarcinoma(152;3.51e-06)|GBM - Glioblastoma multiforme(114;5.06e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00911)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.148)		CAAAGGGAGGGACATGGGGTG	0.612													10	65					0	0	0.000673	0	0
C1orf94	84970	broad.mit.edu	37	1	34663168	34663168	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:34663168G>A	uc001bxs.3	+	2	492	c.93G>A	c.(91-93)GGG>GGA	p.G31G	C1orf94_uc001bxt.2_Silent_p.G221G	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	31							protein binding				0		Myeloproliferative disorder(586;0.0393)				GCAGCAAGGGGACAGAGGACA	0.567													19	51					0	0	0.000958	0	0
NCDN	23154	broad.mit.edu	37	1	36030854	36030855	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:36030854_36030855GG>AA	uc001bza.2	+	8	1907_1908	c.1780_1781GG>AA	c.(1780-1782)GGG>AAG	p.G594K	NCDN_uc001bzb.2_Missense_Mutation_p.G594K|NCDN_uc001bzc.2_Missense_Mutation_p.G577K	NM_001014839	NP_001014839	Q9UBB6	NCDN_HUMAN	neurochondrin isoform 1	594					neuron projection development	cytosol|dendrite|neuronal cell body				large_intestine(2)|pancreas(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				AGCATCCCGAGGGTTCTTCGCA	0.614											OREG0013355	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	105					0	0	0.004672	0	0
TRAPPC3	27095	broad.mit.edu	37	1	36603448	36603448	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:36603448G>A	uc001bzx.2	-	4	460	c.372C>T	c.(370-372)TCC>TCT	p.S124S	TRAPPC3_uc001bzy.2_Silent_p.S78S	NM_014408	NP_055223	O43617	TPPC3_HUMAN	trafficking protein particle complex 3	124						endoplasmic reticulum	guanylate cyclase activity|heme binding			central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0393)				AATAAATAAGGGATGAGTGGT	0.458													20	60					0	0	0.001216	0	0
FAM176B	55194	broad.mit.edu	37	1	36788614	36788614	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:36788614C>T	uc001cai.1	-	1	236	c.25G>A	c.(25-27)GAG>AAG	p.E9K	C1orf113_uc010oic.1_Intron|FAM176B_uc001caj.1_Missense_Mutation_p.E9K	NM_018166	NP_060636	Q9NVM1	F176B_HUMAN	hypothetical protein LOC55194	9						integral to membrane				pancreas(1)	1						CTGAGCAACTCCATGTCCCTT	0.662													5	46					0	0	0.001168	0	0
ZMYND12	84217	broad.mit.edu	37	1	42905608	42905608	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:42905608G>A	uc001chj.2	-	4	783	c.513C>T	c.(511-513)CAC>CAT	p.H171H	ZMYND12_uc010ojt.1_Silent_p.H61H	NM_032257	NP_115633	Q9H0C1	ZMY12_HUMAN	zinc finger, MYND-type containing 12 isoform 1	171						intracellular	zinc ion binding			ovary(1)	1	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GCAGTAAAGAGTGGGTGGCAT	0.443													26	88					0	0	0.001271	0	0
DAB1	1600	broad.mit.edu	37	1	57489283	57489283	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:57489283G>A	uc001cys.1	-	13	1490	c.816C>T	c.(814-816)ATC>ATT	p.I272I	DAB1_uc001cyt.1_Silent_p.I270I|DAB1_uc001cyq.1_Silent_p.I270I|DAB1_uc001cyr.1_Silent_p.I186I|DAB1_uc009vzw.1_Silent_p.I254I|DAB1_uc009vzx.1_Silent_p.I272I	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	305					cell differentiation|nervous system development					skin(2)|ovary(1)	3						ATGAAGATGGGATAAAGGCAT	0.537													9	25					0	0	0.000443	0	0
RPE65	6121	broad.mit.edu	37	1	68905297	68905297	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:68905297C>T	uc001dei.1	-	7	726	c.672G>A	c.(670-672)GAG>GAA	p.E224E		NM_000329	NP_000320	Q16518	RPE65_HUMAN	retinal pigment epithelium-specific protein	224					visual perception	cytoplasm|plasma membrane	all-trans-retinyl-palmitate hydrolase activity|metal ion binding|retinol isomerase activity			ovary(1)	1						GTACAACGATCTCTGACTTGC	0.363													16	61					0	0	0.001216	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74648261	74648261	+	Silent	SNP	G	A	A	rs144700840		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:74648261G>A	uc001dfy.3	-	3	726	c.534C>T	c.(532-534)AAC>AAT	p.N178N	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	178	LRRCT.									ovary(2)	2						AAAGTCGATGGTTACATGCTT	0.343													5	26					0	0	0.001168	0	0
SLC44A5	204962	broad.mit.edu	37	1	75677163	75677163	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:75677163G>A	uc001dgu.2	-	23	2181	c.2037C>T	c.(2035-2037)TTC>TTT	p.F679F	SLC44A5_uc001dgt.2_Silent_p.F679F|SLC44A5_uc001dgs.2_Silent_p.F637F|SLC44A5_uc001dgr.2_Silent_p.F637F|SLC44A5_uc010oqz.1_Silent_p.F718F|SLC44A5_uc010ora.1_Silent_p.F673F|SLC44A5_uc010orb.1_Silent_p.F549F	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	679	Cytoplasmic (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						AGAAGCAGATGAAAATTGTTT	0.443													13	32					0	0	0.001855	0	0
ST6GALNAC3	256435	broad.mit.edu	37	1	76779672	76779672	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:76779672G>A	uc001dhh.2	+	2	364	c.201G>A	c.(199-201)GTG>GTA	p.V67V	ST6GALNAC3_uc001dhg.3_Silent_p.V67V|ST6GALNAC3_uc010orh.1_Intron	NM_152996	NP_694541	Q8NDV1	SIA7C_HUMAN	sialyltransferase 7C isoform 1	67	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			ovary(3)|skin(2)	5						ACATAAATGTGAAGACACAAG	0.458													13	56					0	0	0.004007	0	0
ELTD1	64123	broad.mit.edu	37	1	79357344	79357344	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:79357344G>A	uc001diq.3	-	14	2031	c.1875C>T	c.(1873-1875)TTC>TTT	p.F625F		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	625	Helical; Name=6; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		TGCCGAGAAGGAACAGAAGAG	0.478													4	40					0	0	0.000248	0	0
RBMXL1	494115	broad.mit.edu	37	1	89448463	89448464	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:89448463_89448464GG>AA	uc009wcx.2	-	3	1762_1763	c.1046_1047CC>TT	c.(1045-1047)CCC>CTT	p.P349L	CCBL2_uc001dmp.2_Intron|CCBL2_uc001dmq.2_Intron|CCBL2_uc001dmr.2_Intron|RBMXL1_uc001dms.2_Missense_Mutation_p.P349L	NM_001162536	NP_001156008	Q96E39	RBMXL_HUMAN	RNA binding motif protein, X-linked-like 1	349	Ser-rich.						nucleotide binding|RNA binding				0						CTACAGAAGGGGGAAGCCCTCT	0.53													25	166					0	0	0.004672	0	0
GBP6	163351	broad.mit.edu	37	1	89834181	89834181	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:89834181A>G	uc001dnf.2	+	2	345	c.71A>G	c.(70-72)AAC>AGC	p.N24S	GBP6_uc010ost.1_Intron	NM_198460	NP_940862	Q6ZN66	GBP6_HUMAN	guanylate binding protein family, member 6	24							GTP binding|GTPase activity			ovary(2)	2		Lung NSC(277;0.0908)		all cancers(265;0.0108)|Epithelial(280;0.0398)		CTATTGGTGAACCAGCAAGCT	0.483													21	95					0	0	0.002299	0	0
BCAR3	8412	broad.mit.edu	37	1	94057855	94057855	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:94057855G>A	uc001dpz.2	-	4	728	c.453C>T	c.(451-453)AGC>AGT	p.S151S	BCAR3_uc001dqa.2_Silent_p.S151S|BCAR3_uc001dqb.2_Silent_p.S151S|BCAR3_uc001dpy.2_Silent_p.S60S|uc009wdn.2_RNA	NM_003567	NP_003558	O75815	BCAR3_HUMAN	breast cancer antiestrogen resistance 3	151					response to drug|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3		all_lung(203;0.00145)|Lung NSC(277;0.00662)		all cancers(265;0.0126)|GBM - Glioblastoma multiforme(16;0.0467)|Epithelial(280;0.166)		ACCAGGCATGGCTGCGCAGGT	0.597													13	47					0	0	0.002450	0	0
AGL	178	broad.mit.edu	37	1	100346996	100346996	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:100346996T>A	uc001dsi.1	+	16	2550	c.2150T>A	c.(2149-2151)TTT>TAT	p.F717Y	AGL_uc001dsj.1_Missense_Mutation_p.F717Y|AGL_uc001dsk.1_Missense_Mutation_p.F717Y|AGL_uc001dsl.1_Missense_Mutation_p.F717Y|AGL_uc001dsm.1_Missense_Mutation_p.F701Y|AGL_uc001dsn.1_Missense_Mutation_p.F700Y	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	717	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		GCCAAGGGTTTTATTCAGGCA	0.393													16	87					0	0	0.004007	0	0
CHIA	27159	broad.mit.edu	37	1	111860660	111860660	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:111860660G>A	uc001eas.2	+	8	761	c.658G>A	c.(658-660)GGC>AGC	p.G220S	CHIA_uc001ear.2_Missense_Mutation_p.G112S|CHIA_uc001eaq.2_Missense_Mutation_p.G112S|CHIA_uc009wgc.2_Missense_Mutation_p.G112S|CHIA_uc001eat.2_Missense_Mutation_p.G59S|CHIA_uc001eav.2_Missense_Mutation_p.G59S|CHIA_uc001eau.2_Missense_Mutation_p.G59S|CHIA_uc009wgd.2_Missense_Mutation_p.G59S	NM_201653	NP_970615	Q9BZP6	CHIA_HUMAN	acidic chitinase isoform c	220					apoptosis|cell wall chitin metabolic process|chitin catabolic process|digestion|immune response|positive regulation of chemokine secretion|production of molecular mediator involved in inflammatory response|response to acid|response to fungus	cytoplasm|extracellular space	cation binding|chitin binding|chitinase activity|kinase binding|lysozyme activity|sugar binding			ovary(1)	1		all_cancers(81;3.23e-05)|all_epithelial(167;1.2e-05)|all_lung(203;0.000154)|Lung NSC(277;0.000304)		Colorectal(144;0.0115)|Lung(183;0.0292)|COAD - Colon adenocarcinoma(174;0.0314)|all cancers(265;0.0477)|Epithelial(280;0.0918)|LUSC - Lung squamous cell carcinoma(189;0.154)		CTCCTGGGAGGGCTACACTGG	0.532													9	37					0	0	0.001368	0	0
ST7L	54879	broad.mit.edu	37	1	113161675	113161675	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:113161675G>A	uc001ecd.2	-	1	366	c.61C>T	c.(61-63)CCT>TCT	p.P21S	ST7L_uc001ecc.2_5'Flank|ST7L_uc010owg.1_Missense_Mutation_p.P21S|ST7L_uc010owh.1_Missense_Mutation_p.P21S|ST7L_uc001ece.2_Missense_Mutation_p.P21S|ST7L_uc001ecf.2_Missense_Mutation_p.P21S|ST7L_uc001ecg.2_RNA|ST7L_uc010owi.1_5'Flank|ST7L_uc001ech.2_Missense_Mutation_p.P21S|ST7L_uc001eci.2_Missense_Mutation_p.P21S|ST7L_uc009wgi.1_RNA|ST7L_uc010owj.1_Missense_Mutation_p.P21S|CAPZA1_uc001ecj.1_5'Flank	NM_017744	NP_060214	Q8TDW4	ST7L_HUMAN	suppression of tumorigenicity 7-like isoform 1	21					negative regulation of cell growth	integral to membrane	binding				0	Lung SC(450;0.246)	all_cancers(81;1.44e-07)|all_epithelial(167;7.64e-07)|all_lung(203;2.16e-05)|Lung NSC(69;3.86e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTTAGGCCAGGGACAGATGCA	0.692													5	21					0	0	0.001168	0	0
DENND2C	163259	broad.mit.edu	37	1	115079119	115079119	+	RNA	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:115079119G>A	uc001eez.2	-	29		c.4524C>T				NM_198459		Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C											skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GCAAGGTGATGGAAGTGGGCA	0.483													16	97					0	0	0.001882	0	0
FAM46C	54855	broad.mit.edu	37	1	118166458	118166458	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:118166458G>A	uc001ehe.2	+	2	1167	c.968G>A	c.(967-969)GGG>GAG	p.G323E		NM_017709	NP_060179	Q5VWP2	FA46C_HUMAN	hypothetical protein LOC54855	323											0	Lung SC(450;0.225)	all_cancers(81;0.000101)|all_lung(203;3.4e-06)|all_epithelial(167;4.98e-06)|Lung NSC(69;2.33e-05)		Lung(183;0.0576)|LUSC - Lung squamous cell carcinoma(189;0.192)|Colorectal(144;0.247)		TGTCTCATGGGGCATGAACGC	0.537										Multiple Myeloma(3;1.13e-06)			7	43					0	0	0.001984	0	0
HFE2	148738	broad.mit.edu	37	1	145416393	145416393	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:145416393C>T	uc001eni.2	+	4	1063	c.738C>T	c.(736-738)GCC>GCT	p.A246A	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Silent_p.A20A|HFE2_uc001enk.2_Silent_p.A133A|HFE2_uc001enl.2_Silent_p.A20A	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	246					axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					TTCCTGTAGCCTTTGAAGATG	0.473													16	83					0	0	0.004007	0	0
LOC200030	200030	broad.mit.edu	37	1	148017573	148017573	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:148017573G>A	uc001eqf.2	-	12	1765	c.1730C>T	c.(1729-1731)TCG>TTG	p.S577L	LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqg.2_Intron|FLJ39739_uc001eqo.1_Intron|NBPF14_uc010pab.1_Intron|NBPF14_uc010pac.1_Intron|NBPF14_uc001eqx.2_Intron|NBPF14_uc010pae.1_Intron|NBPF14_uc010paf.1_Intron|NBPF14_uc009wkf.1_RNA|NBPF14_uc001eqq.2_Missense_Mutation_p.S237L|NBPF14_uc001eqs.1_Missense_Mutation_p.S116L	NM_017940	NP_060410	Q86T75	NBPFB_HUMAN	hypothetical protein LOC55672	577	NBPF 3.					cytoplasm					0						AGACTTGTACGAGGCCAACAT	0.478													16	338					0	0	0.003610	0	0
CTSS	1520	broad.mit.edu	37	1	150727493	150727493	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:150727493G>A	uc001evn.2	-	4	516	c.383C>T	c.(382-384)ACT>ATT	p.T128I	CTSS_uc010pcj.1_Intron|CTSS_uc001evo.1_Missense_Mutation_p.T128I	NM_004079	NP_004070	P25774	CATS_HUMAN	cathepsin S preproprotein	128					immune response|proteolysis	extracellular region|lysosome	cysteine-type endopeptidase activity				0	all_cancers(9;6.17e-52)|all_epithelial(9;9.7e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.00146)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0485)|Epithelial(6;5.02e-21)|all cancers(9;1.28e-20)|OV - Ovarian serous cystadenocarcinoma(6;1.09e-14)|BRCA - Breast invasive adenocarcinoma(12;0.00501)|LUSC - Lung squamous cell carcinoma(543;0.171)			TTTCACTTCAGTAACACACCC	0.423													31	150					0	0	0.002096	0	0
FLG	2312	broad.mit.edu	37	1	152275224	152275224	+	Silent	SNP	C	T	T	rs150630644		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:152275224C>T	uc001ezu.1	-	3	12174	c.12138G>A	c.(12136-12138)TCG>TCA	p.S4046S		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	4046					keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity	p.S4046S(1)		ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCAGTTGTTTCGATATATCAC	0.343									Ichthyosis				5	54					0	0	0.001168	0	0
FLG	2312	broad.mit.edu	37	1	152284056	152284056	+	Silent	SNP	G	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:152284056G>T	uc001ezu.1	-	3	3342	c.3306C>A	c.(3304-3306)TCC>TCA	p.S1102S	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1102	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGTCACGTGCGGACTCTTGGT	0.577									Ichthyosis				8	330					0.00448238	0.00848147	0.004482	1	0
INTS3	65123	broad.mit.edu	37	1	153732018	153732018	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:153732018C>T	uc009wom.2	+	12	1387	c.1166C>T	c.(1165-1167)TCC>TTC	p.S389F	INTS3_uc001fct.2_Missense_Mutation_p.S389F|INTS3_uc001fcu.2_Missense_Mutation_p.S81F|INTS3_uc001fcv.2_Missense_Mutation_p.S183F|INTS3_uc010peb.1_Missense_Mutation_p.S183F|INTS3_uc001fcw.2_5'UTR|INTS3_uc010pec.1_Intron	NM_023015	NP_075391	Q68E01	INT3_HUMAN	integrator complex subunit 3	390					DNA repair|G2/M transition checkpoint|response to ionizing radiation|snRNA processing	integrator complex|SOSS complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GTCGCTGCCTCCAATGCCAAG	0.493													23	134					0	0	0.002299	0	0
NUP210L	91181	broad.mit.edu	37	1	154018830	154018830	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:154018830C>T	uc001fdw.2	-	26	3571	c.3499G>A	c.(3499-3501)GAA>AAA	p.E1167K	NUP210L_uc009woq.2_Missense_Mutation_p.E76K|NUP210L_uc010peh.1_Missense_Mutation_p.E1167K	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	1167						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			TGAACAACTTCAATCTGTACT	0.478													13	33					0	0	0.001855	0	0
ATP8B2	57198	broad.mit.edu	37	1	154315295	154315295	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:154315295C>T	uc001fex.2	+	15	1410	c.1410C>T	c.(1408-1410)TCC>TCT	p.S470S		NM_020452	NP_065185	P98198	AT8B2_HUMAN	ATPase, class I, type 8B, member 2 isoform a	456	Cytoplasmic (Potential).				ATP biosynthetic process	plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(1)|skin(1)	2	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			TTGACTTCTCCTTCAATCCTC	0.557													17	66					0	0	0.001216	0	0
ZBTB7B	51043	broad.mit.edu	37	1	154987342	154987342	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:154987342G>A	uc001fgk.3	+	3	364	c.206G>A	c.(205-207)GGA>GAA	p.G69E	ZBTB7B_uc009wpa.2_Missense_Mutation_p.G69E|ZBTB7B_uc001fgj.3_Missense_Mutation_p.G103E|ZBTB7B_uc010peq.1_Missense_Mutation_p.G103E|ZBTB7B_uc001fgl.3_Missense_Mutation_p.G69E	NM_015872	NP_056956	O15156	ZBT7B_HUMAN	zinc finger and BTB domain containing 7B	69	BTB.				cell differentiation|ectoderm development|multicellular organismal development|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding				0	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GGCGGTGGCGGAGCTGTCATG	0.652													15	63					0	0	0.002450	0	0
DCST2	127579	broad.mit.edu	37	1	155005658	155005658	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:155005658G>A	uc001fgm.2	-	2	431	c.351C>T	c.(349-351)ACC>ACT	p.T117T	DCST2_uc009wpb.2_RNA|DCST1_uc010per.1_5'Flank|DCST1_uc001fgn.1_5'Flank|DCST1_uc010pes.1_5'Flank	NM_144622	NP_653223	Q5T1A1	DCST2_HUMAN	DC-STAMP domain containing 2	117	Cytoplasmic (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			CGCTGGCCCGGGTGAAGTTGC	0.617													6	20					0	0	0.001168	0	0
IQGAP3	128239	broad.mit.edu	37	1	156507026	156507026	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:156507026G>A	uc001fpf.2	-	27	3444	c.3369C>T	c.(3367-3369)CTC>CTT	p.L1123L		NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	1123	Ras-GAP.				small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CAGTCATGGCGAGGAGGTTGC	0.557													10	79					0	0	0.000978	0	0
FCRL5	83416	broad.mit.edu	37	1	157514075	157514075	+	Missense_Mutation	SNP	G	T	T	rs145991029		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:157514075G>T	uc001fqu.2	-	5	979	c.821C>A	c.(820-822)CCG>CAG	p.P274Q	FCRL5_uc009wsm.2_Missense_Mutation_p.P274Q|FCRL5_uc010phv.1_Missense_Mutation_p.P274Q|FCRL5_uc010phw.1_Missense_Mutation_p.P189Q|FCRL5_uc001fqv.1_Missense_Mutation_p.P274Q|FCRL5_uc010phx.1_Missense_Mutation_p.P25Q	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	274	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				CCAGGATCTCGGGCTGTCAGA	0.512													5	172					0.00116845	0.0022188	0.001168	1	0
OR10Z1	128368	broad.mit.edu	37	1	158577107	158577107	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:158577107G>A	uc010pio.1	+	1	879	c.879G>A	c.(877-879)AGG>AGA	p.R293R		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					ATAGTCTAAGGAATAGGGCTA	0.463													43	205					0	0	0.003214	0	0
MNDA	4332	broad.mit.edu	37	1	158811970	158811970	+	Silent	SNP	T	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:158811970T>A	uc001fsz.1	+	2	227	c.27T>A	c.(25-27)CTT>CTA	p.L9L		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	9	DAPIN.				B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					AGAAAATTCTTTTGCTGAAAG	0.308													10	48					0	0	0.001855	0	0
LY9	4063	broad.mit.edu	37	1	160793254	160793254	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:160793254G>A	uc001fwu.2	+	8	1549	c.1499_splice	c.e8-1	p.E500_splice	LY9_uc001fwv.2_Intron|LY9_uc001fww.2_Splice_Site_p.E410_splice|LY9_uc001fwx.2_Splice_Site_p.E410_splice|LY9_uc001fwy.1_Intron|LY9_uc001fwz.2_Intron	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a						cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			ATGTGTTCCAGAACCCACAGC	0.557													7	18					0	0	0.003080	0	0
ADAMTS4	9507	broad.mit.edu	37	1	161163612	161163612	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:161163612G>A	uc001fyt.3	-	6	1981	c.1553C>T	c.(1552-1554)CCA>CTA	p.P518L		NM_005099	NP_005090	O75173	ATS4_HUMAN	ADAM metallopeptidase with thrombospondin type 1	518	Disintegrin.				proteolysis|skeletal system development	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|protease binding|zinc ion binding			ovary(4)|central_nervous_system(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			ACCAGCCTGTGGAATCTGCAA	0.637													9	31					0	0	0.000673	0	0
SCYL3	57147	broad.mit.edu	37	1	169842850	169842850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:169842850G>A	uc001ggs.2	-	5	707	c.509C>T	c.(508-510)CCT>CTT	p.P170L	SCYL3_uc001ggt.2_Missense_Mutation_p.P170L|SCYL3_uc001ggu.2_RNA	NM_181093	NP_851607	Q8IZE3	PACE1_HUMAN	SCY1-like 3 isoform 2	170	Protein kinase.				cell migration	Golgi apparatus|lamellipodium	ATP binding|protein binding|protein kinase activity			ovary(1)|skin(1)	2	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CTCTTCAGGAGGGATAGATGC	0.328													13	84					0	0	0.002450	0	0
FMO3	2328	broad.mit.edu	37	1	171073058	171073058	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:171073058G>A	uc001ghi.2	+	3	376	c.265G>A	c.(265-267)GAA>AAA	p.E89K	FMO3_uc001ghh.2_Missense_Mutation_p.E89K|FMO3_uc010pmb.1_Missense_Mutation_p.E69K|FMO3_uc010pmc.1_Intron|MIR1295_hsa-mir-1295|MI0006357_5'Flank	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	89					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CAAGATCCAGGAATATATCAT	0.378													7	60					0	0	0.001984	0	0
BAT2L2	23215	broad.mit.edu	37	1	171557584	171557584	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:171557584C>T	uc010pmg.1	+	33	8399	c.8133C>T	c.(8131-8133)TTC>TTT	p.F2711F	BAT2L2_uc010pmh.1_Silent_p.F1623F|BAT2L2_uc010pmi.1_Silent_p.F548F|BAT2L2_uc010pmj.1_Silent_p.F243F	NM_015172	NP_055987	Q9Y520	PRC2C_HUMAN	HBxAg transactivated protein 2	2711							protein C-terminus binding				0						AGAAGCAGTTCCAGTCAGCCC	0.433													13	44					0	0	0.001368	0	0
FAM129A	116496	broad.mit.edu	37	1	184764971	184764972	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:184764971_184764972GG>AA	uc001gra.2	-	14	2120_2121	c.1926_1927CC>TT	c.(1924-1929)CTCCCT>CTTTCT	p.P643S	FAM129A_uc001grb.1_Intron	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	643					negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						CTTGGCCCAGGGAGAGAAAGGC	0.55													16	80					0	0	0.004672	0	0
FAM5C	339479	broad.mit.edu	37	1	190067643	190067643	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:190067643G>A	uc001gse.1	-	8	2038	c.1806C>T	c.(1804-1806)GAC>GAT	p.D602D	FAM5C_uc010pot.1_Silent_p.D500D	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	602						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GCAGGGGTAGGTCCAACTTAG	0.468													41	186					0	0	0.001706	0	0
LGR6	59352	broad.mit.edu	37	1	202163294	202163294	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:202163294C>T	uc001gxu.2	+	1	177	c.177C>T	c.(175-177)GCC>GCT	p.A59A		NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	59	LRRNT.|Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity	p.299_300insGRS(1)		large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						GGCTGTCCGCCGTTCCGGGGG	0.567													11	22					0	0	0.002450	0	0
FMOD	2331	broad.mit.edu	37	1	203317363	203317363	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:203317363G>A	uc001gzr.2	-	2	172	c.36C>T	c.(34-36)CTC>CTT	p.L12L	FMOD_uc010pqi.1_RNA	NM_002023	NP_002014	Q06828	FMOD_HUMAN	fibromodulin precursor	12					transforming growth factor beta receptor complex assembly	extracellular space|proteinaceous extracellular matrix				ovary(2)|breast(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.171)			AGAGGGAGAAGAGCCCTGCCA	0.572													7	54					0	0	0.004482	0	0
CDK18	5129	broad.mit.edu	37	1	205492424	205492424	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:205492424G>A	uc001hcr.2	+	2	348	c.129G>A	c.(127-129)GAG>GAA	p.E43E	CDK18_uc009xbk.1_Intron|CDK18_uc009xbl.1_RNA|CDK18_uc010pri.1_Missense_Mutation_p.R2K|CDK18_uc001hcp.2_Silent_p.E43E|CDK18_uc001hcq.2_Silent_p.E43E|CDK18_uc010prj.1_5'UTR|CDK18_uc001hcs.2_5'UTR|CDK18_uc009xbm.1_5'Flank	NM_212503	NP_997668	Q07002	CDK18_HUMAN	PCTAIRE protein kinase 3 isoform a	41							ATP binding|cyclin-dependent protein kinase activity|protein binding|signal transducer activity			stomach(2)	2						GGCGGAATGAGAGTGAGGGGT	0.622													9	38					0	0	0.000443	0	0
C1orf227	149643	broad.mit.edu	37	1	213009267	213009267	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:213009267C>T	uc001hjq.2	-	2	333	c.225G>A	c.(223-225)TGG>TGA	p.W75*		NM_001024601	NP_001019772	Q537H7	CA227_HUMAN	hypothetical protein LOC149643	75											0						TCAGCTTGATCCAGGAGCTCC	0.403													17	113					0	0	0.000958	0	0
KCNK2	3776	broad.mit.edu	37	1	215298065	215298065	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:215298065C>T	uc001hkq.2	+	3	616	c.447C>T	c.(445-447)TTC>TTT	p.F149F	KCNK2_uc001hko.2_Silent_p.F145F|KCNK2_uc009xdm.2_RNA|KCNK2_uc001hkp.2_Intron|KCNK2_uc010pua.1_Intron|KCNK2_uc001hkr.3_Silent_p.F134F	NM_001017425	NP_001017425	O95069	KCNK2_HUMAN	potassium channel, subfamily K, member 2 isoform	149							outward rectifier potassium channel activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0399)|all cancers(67;0.0556)|GBM - Glioblastoma multiforme(131;0.068)	Dofetilide(DB00204)	GTTCCTTCTTCTTTGCTGGCA	0.363													22	144					0	0	0.003330	0	0
USH2A	7399	broad.mit.edu	37	1	215824121	215824121	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:215824121C>T	uc001hku.1	-	65	14543	c.14156G>A	c.(14155-14157)GGA>GAA	p.G4719E		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4719	Fibronectin type-III 32.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GGGGGCTTTTCCTGCAGAATT	0.473										HNSCC(13;0.011)			20	84					0	0	0.001216	0	0
USH2A	7399	broad.mit.edu	37	1	216073545	216073545	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:216073545G>A	uc001hku.1	-	40	7853	c.7466C>T	c.(7465-7467)CCT>CTT	p.P2489L		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2489	Extracellular (Potential).|Fibronectin type-III 11.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CGATGCAGAAGGATTGGAAAA	0.348										HNSCC(13;0.011)			9	43					0	0	0.004482	0	0
USH2A	7399	broad.mit.edu	37	1	216348630	216348630	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:216348630G>A	uc001hku.1	-	21	4978	c.4591C>T	c.(4591-4593)CCC>TCC	p.P1531S	USH2A_uc001hkv.2_Missense_Mutation_p.P1531S	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1531	Laminin G-like 1.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GTGGAGCTGGGAAATTTACAA	0.403										HNSCC(13;0.011)			5	27					0	0	0.000602	0	0
IARS2	55699	broad.mit.edu	37	1	220316323	220316323	+	Silent	SNP	T	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:220316323T>A	uc001hmc.2	+	21	2702	c.2598T>A	c.(2596-2598)ACT>ACA	p.T866T	IARS2_uc001hmd.2_Silent_p.T202T	NM_018060	NP_060530	Q9NSE4	SYIM_HUMAN	mitochondrial isoleucine tRNA synthetase	866					isoleucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|isoleucine-tRNA ligase activity			ovary(2)|skin(2)	4				GBM - Glioblastoma multiforme(131;0.0554)	L-Isoleucine(DB00167)	GGATTAGTACTAGTTCTATCT	0.433													15	66					0	0	0.003163	0	0
CAPN2	824	broad.mit.edu	37	1	223943208	223943208	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:223943208C>T	uc001hob.3	+	10	1386	c.1162C>T	c.(1162-1164)CTG>TTG	p.L388L	CAPN2_uc010puy.1_Silent_p.L310L|CAPN2_uc001hoc.2_5'Flank	NM_001748	NP_001739	P17655	CAN2_HUMAN	calpain 2 isoform 1	388	Domain III.				proteolysis	cytoplasm|plasma membrane				lung(3)|breast(1)|skin(1)	5				GBM - Glioblastoma multiforme(131;0.109)		CCCTCAGTACCTGATCAAGCT	0.512													26	45					0	0	0.001061	0	0
TP53BP2	7159	broad.mit.edu	37	1	223984229	223984229	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:223984229G>A	uc010pvb.1	-	13	2304	c.2012C>T	c.(2011-2013)TCC>TTC	p.S671F	TP53BP2_uc001hod.2_Missense_Mutation_p.S542F|TP53BP2_uc010puz.1_5'UTR|TP53BP2_uc010pva.1_Missense_Mutation_p.S310F	NM_001031685	NP_001026855	Q13625	ASPP2_HUMAN	tumor protein p53 binding protein, 2 isoform 1	665					apoptosis|cell cycle|induction of apoptosis|negative regulation of cell cycle|signal transduction	nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protein binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(2)|lung(1)	3				GBM - Glioblastoma multiforme(131;0.0958)		CTGGCTATTGGAATAAATGTT	0.453													16	152					0	0	0.004007	0	0
ACBD3	64746	broad.mit.edu	37	1	226353593	226353593	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:226353593A>G	uc001hpy.2	-	2	442	c.395T>C	c.(394-396)GTT>GCT	p.V132A		NM_022735	NP_073572	Q9H3P7	GCP60_HUMAN	acyl-Coenzyme A binding domain containing 3	132	ACB.				steroid biosynthetic process|transport	Golgi membrane|integral to membrane|mitochondrion	fatty-acyl-CoA binding|protein binding				0	Breast(184;0.158)			GBM - Glioblastoma multiforme(131;0.121)		AAAGAATCCAACCTCAGGACA	0.393													4	47					0	0	0.001168	0	0
URB2	9816	broad.mit.edu	37	1	229772137	229772138	+	Missense_Mutation	DNP	CC	GT	GT	rs147789751	byFrequency	TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:229772137_229772138CC>GT	uc001hts.1	+	4	1913_1914	c.1777_1778CC>GT	c.(1777-1779)CCA>GTA	p.P593V	URB2_uc009xfd.1_Missense_Mutation_p.P593V	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	593						nucleolus				central_nervous_system(2)|ovary(1)	3						CACCCCAGGCCCAGAGCCAGAG	0.599													18	115					0	0	0.004672	0	0
WDR64	128025	broad.mit.edu	37	1	241912906	241912906	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:241912906G>A	uc001hzf.1	+	8	935	c.782G>A	c.(781-783)GGG>GAG	p.G261E	WDR64_uc001hzg.1_Missense_Mutation_p.G7E	NM_144625	NP_653226	B1ANS9	WDR64_HUMAN	WD repeat domain 64	541										skin(1)	1	Ovarian(103;0.103)	all_cancers(173;0.0121)	OV - Ovarian serous cystadenocarcinoma(106;0.0116)			TTGCCGGAGGGGAAAGACTGG	0.522													31	82					0	0	0.001512	0	0
OR2W5	441932	broad.mit.edu	37	1	247655180	247655180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:247655180C>T	uc001icz.1	+	1	751	c.751C>T	c.(751-753)CTT>TTT	p.L251F		NM_001004698	NP_001004698	A6NFC9	OR2W5_HUMAN	olfactory receptor, family 2, subfamily W,	251					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.222)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			TGGTCTCTCTCTTCTACGGAA	0.542													20	61					0	0	0.000958	0	0
IL15RA	3601	broad.mit.edu	37	10	6002399	6002399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:6002399G>A	uc001iiv.2	-	4	596	c.514C>T	c.(514-516)CAC>TAC	p.H172Y	IL15RA_uc001iiu.2_Missense_Mutation_p.H20Y|IL15RA_uc010qau.1_Missense_Mutation_p.H139Y|IL15RA_uc001iiw.2_Missense_Mutation_p.H136Y|IL15RA_uc001iix.2_Missense_Mutation_p.H103Y|IL15RA_uc001iiy.2_Missense_Mutation_p.H20Y	NM_002189	NP_002180	Q13261	I15RA_HUMAN	interleukin 15 receptor, alpha isoform 1	172	Extracellular (Potential).				cell proliferation	cytoplasmic vesicle membrane|endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane|nuclear membrane	cytokine receptor activity				0						GGGGTGCCGTGGGAGGACTCA	0.587													19	94					0	0	0.001523	0	0
HSPA14	51182	broad.mit.edu	37	10	14890856	14890856	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:14890856C>T	uc001inf.2	+	5	479	c.338C>T	c.(337-339)CCA>CTA	p.P113L	HSPA14_uc010qbw.1_Missense_Mutation_p.P113L	NM_016299	NP_057383	Q0VDF9	HSP7E_HUMAN	heat shock 70kDa protein 14 isoform 1	113					'de novo' cotranslational protein folding	cytosol	ATP binding|protein binding			ovary(2)|breast(2)|lung(1)	5						TTTGTTAACCCAGAAGATGTT	0.234													10	45					0	0	0.001855	0	0
PLXDC2	84898	broad.mit.edu	37	10	20290791	20290791	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:20290791G>A	uc001iqg.1	+	2	837	c.200G>A	c.(199-201)AGA>AAA	p.R67K	PLXDC2_uc001iqh.1_Missense_Mutation_p.R67K	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	67	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						AGGTGGAAAAGAAACTTGGAC	0.527													10	27					0	0	0.000443	0	0
ARHGAP21	57584	broad.mit.edu	37	10	24874692	24874692	+	Nonsense_Mutation	SNP	G	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:24874692G>C	uc001isb.2	-	26	5013	c.4526C>G	c.(4525-4527)TCA>TGA	p.S1509*	ARHGAP21_uc010qdb.1_RNA	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	1508					signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						GTTGTGTTTTGAGTTGTGTGG	0.488													36	219					0	0	0.001287	0	0
GPR158	57512	broad.mit.edu	37	10	25839947	25839947	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:25839947C>T	uc001isj.2	+	6	1507	c.1447C>T	c.(1447-1449)CTC>TTC	p.L483F		NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	483	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						TCGCTGTATTCTCCTAAGATG	0.423													35	112					0	0	0.001485	0	0
PTCHD3	374308	broad.mit.edu	37	10	27703027	27703027	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:27703027C>T	uc001itu.2	-	1	271	c.153G>A	c.(151-153)CCG>CCA	p.P51P		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	51					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						CGGGGGATTTCGGGGGTGCCA	0.682													22	88					0	0	0.002780	0	0
SVIL	6840	broad.mit.edu	37	10	29821661	29821661	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:29821661G>A	uc001iut.1	-	8	2388	c.1635C>T	c.(1633-1635)ACC>ACT	p.T545T	SVIL_uc001iuu.1_Intron|SVIL_uc009xld.1_Silent_p.T545T	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	545					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				ACAGAGAGCGGGTACGGACCT	0.567													27	121					0	0	0.001512	0	0
KIAA1462	57608	broad.mit.edu	37	10	30317232	30317232	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:30317232C>T	uc001iux.2	-	2	1904	c.1845G>A	c.(1843-1845)AAG>AAA	p.K615K	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Silent_p.K477K|KIAA1462_uc009xle.1_Silent_p.K615K	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	615										ovary(4)	4						GAGCCGGGCTCTTATCAGACC	0.498													12	70					0	0	0.000978	0	0
ANK3	288	broad.mit.edu	37	10	61834589	61834589	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:61834589T>C	uc001jky.2	-	37	6242	c.6050A>G	c.(6049-6051)CAA>CGA	p.Q2017R	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2017					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGCTTTTACTTGCACTCTCTC	0.423													34	96					0	0	0.004289	0	0
ANK3	288	broad.mit.edu	37	10	61846547	61846547	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:61846547G>A	uc001jky.2	-	30	3828	c.3636C>T	c.(3634-3636)TTC>TTT	p.F1212F	ANK3_uc001jkw.2_Silent_p.F346F|ANK3_uc009xpa.2_Silent_p.F346F|ANK3_uc001jkx.2_Silent_p.F390F|ANK3_uc010qih.1_Silent_p.F1213F|ANK3_uc001jkz.3_Silent_p.F1206F|ANK3_uc001jla.1_Silent_p.F278F|ANK3_uc001jlb.1_Silent_p.F730F	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1212					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTGGTTTATGGAATTTCCGTC	0.468													7	63					0	0	0.000443	0	0
STOX1	219736	broad.mit.edu	37	10	70644203	70644203	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:70644203C>T	uc001jos.2	+	3	738	c.651C>T	c.(649-651)TCC>TCT	p.S217S	STOX1_uc001jor.2_Silent_p.S217S|STOX1_uc009xpy.2_Intron|STOX1_uc001joq.2_Silent_p.S107S	NM_001130161	NP_001123633	Q6ZVD7	STOX1_HUMAN	storkhead box 1 isoform a	217						cytoplasm|nucleolus	DNA binding			kidney(1)|skin(1)	2						TGCCAGCTTCCATGACATATC	0.483													20	51					0	0	0.001216	0	0
C10orf35	219738	broad.mit.edu	37	10	71391546	71391546	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:71391546C>T	uc001jpq.3	+	3	217	c.47C>T	c.(46-48)CCC>CTC	p.P16L		NM_145306	NP_660349	Q96D05	CJ035_HUMAN	hypothetical protein LOC219738	16						integral to membrane				ovary(1)|skin(1)	2						GATGACGACCCCCGAGTGAGG	0.597													5	24					0	0	0.001984	0	0
ECD	11319	broad.mit.edu	37	10	74899442	74899442	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:74899442G>C	uc001jtn.2	-	10	1424	c.1181C>G	c.(1180-1182)CCA>CGA	p.P394R	ECD_uc009xqx.2_Missense_Mutation_p.P427R|ECD_uc009xqy.2_Missense_Mutation_p.P351R|ECD_uc001jto.2_Missense_Mutation_p.P93R	NM_007265	NP_009196	O95905	SGT1_HUMAN	suppressor of S. cerevisiae gcr2 isoform 1	394					regulation of glycolysis|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	transcription coactivator activity			pancreas(1)	1	Prostate(51;0.0119)					TATATCAAATGGTATTGTCTG	0.343													47	227					0	0	0.003610	0	0
LRIT2	340745	broad.mit.edu	37	10	85981822	85981822	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:85981822G>A	uc001kcy.2	-	3	1515	c.1507C>T	c.(1507-1509)CGC>TGC	p.R503C	LRIT2_uc010qmc.1_Missense_Mutation_p.R513C	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	503						integral to membrane				ovary(2)	2						GCTTTCCTGCGATGAAGACAG	0.632													17	66					0	0	0.006122	0	0
AGAP11	119385	broad.mit.edu	37	10	88768937	88768937	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:88768937C>T	uc001kee.2	+	12	2132	c.928C>T	c.(928-930)CTG>TTG	p.L310L	AGAP11_uc001kef.2_Intron	NM_133447	NP_597704	Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase	310					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						CCTGGCCAGCCTGCAGTCATG	0.582													23	161					0	0	0.005443	0	0
LIPF	8513	broad.mit.edu	37	10	90435980	90435980	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:90435980G>A	uc001kfg.1	+	9	1069	c.903G>A	c.(901-903)GGG>GGA	p.G301G	LIPF_uc001kfh.1_Silent_p.G278G|LIPF_uc010qmt.1_Silent_p.G311G|LIPF_uc010qmu.1_Silent_p.G268G	NM_004190	NP_004181	P07098	LIPG_HUMAN	lipase, gastric precursor	301					lipid catabolic process|triglyceride metabolic process	extracellular region	lipid binding|triglyceride lipase activity				0		Colorectal(252;0.0161)		Colorectal(12;3.91e-05)|COAD - Colon adenocarcinoma(12;5.43e-05)		TTAAGTCTGGGAAATTCCAAG	0.308													9	54					0	0	0.000443	0	0
MYOF	26509	broad.mit.edu	37	10	95076544	95076544	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:95076544C>T	uc001kin.2	-	50	5748	c.5625G>A	c.(5623-5625)ACG>ACA	p.T1875T	MYOF_uc001kio.2_Silent_p.T1862T|MYOF_uc009xue.2_RNA	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	1875	Cytoplasmic (Potential).				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						TTCGAAATTCCGTTTGGTCAA	0.413													11	70					0	0	0.001368	0	0
LZTS2	84445	broad.mit.edu	37	10	102762458	102762458	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:102762458T>A	uc001ksj.2	+	2	232	c.163T>A	c.(163-165)TTC>ATC	p.F55I	LZTS2_uc010qpw.1_Missense_Mutation_p.F55I|LZTS2_uc001ksk.2_Missense_Mutation_p.F55I|LZTS2_uc001ksl.2_Missense_Mutation_p.F55I|LZTS2_uc001ksm.2_RNA	NM_032429	NP_115805	Q9BRK4	LZTS2_HUMAN	leucine zipper, putative tumor suppressor 2	55	Required for centrosomal localization (By similarity).				cell division|mitosis|Wnt receptor signaling pathway	membrane|microtubule|microtubule organizing center				ovary(2)|large_intestine(1)|breast(1)	4				Epithelial(162;7.3e-09)|all cancers(201;3.72e-07)		TGGGCCCACCTTCTTCCGCCA	0.672													7	43					0	0	0.003080	0	0
C10orf118	55088	broad.mit.edu	37	10	115922738	115922739	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:115922738_115922739GG>AA	uc001lbb.1	-	2	941_942	c.289_290CC>TT	c.(289-291)CCT>TTT	p.P97F	C10orf118_uc001lbc.1_Missense_Mutation_p.P97F|C10orf118_uc009xye.1_RNA|C10orf118_uc001lbd.2_Missense_Mutation_p.P97F|C10orf118_uc001lbe.2_Missense_Mutation_p.P97F	NM_018017	NP_060487	Q7Z3E2	CJ118_HUMAN	CTCL tumor antigen L14-2	97										ovary(2)	2		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0161)|all cancers(201;0.0397)		ATTTCCACTAGGAAAATTAGCT	0.347													13	81					0	0	0.004672	0	0
C10orf46	143384	broad.mit.edu	37	10	120514134	120514134	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:120514134G>A	uc001lds.1	-	1	625	c.141C>T	c.(139-141)GCC>GCT	p.A47A	C10orf46_uc010qst.1_RNA	NM_153810	NP_722517	Q86Y37	CJ046_HUMAN	chromosome 10 open reading frame 46	47	Pro-rich.				ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex	ubiquitin protein ligase binding				0		Lung NSC(174;0.142)|all_lung(145;0.175)		all cancers(201;0.0131)		CTCGGGCAGGGGCCGGGATCG	0.731													3	13					0	0	0.004672	0	0
WDR11	55717	broad.mit.edu	37	10	122630798	122630798	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:122630798C>T	uc010qtf.1	+	10	1649	c.1411C>T	c.(1411-1413)CGT>TGT	p.R471C	WDR11_uc010qte.1_Missense_Mutation_p.R73C|WDR11_uc001lfd.1_5'UTR	NM_018117	NP_060587	Q9BZH6	WDR11_HUMAN	bromodomain and WD repeat domain containing 2	471	WD 4.					integral to membrane					0						GTTTGCTATTCGTATGTGTCC	0.473													11	62					0	0	0.001855	0	0
BTBD16	118663	broad.mit.edu	37	10	124094415	124094415	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:124094415A>C	uc001lgc.1	+	14	1435	c.1184A>C	c.(1183-1185)AAA>ACA	p.K395T	BTBD16_uc001lgd.1_Missense_Mutation_p.K394T	NM_144587	NP_653188	Q32M84	BTBDG_HUMAN	BTB (POZ) domain containing 16	395										skin(1)	1		all_neural(114;0.107)|Lung NSC(174;0.175)|all_lung(145;0.222)|Breast(234;0.238)				ACTTATTCGAAAACGATTGCT	0.303													10	96					0	0	0.001368	0	0
DMBT1	1755	broad.mit.edu	37	10	124339135	124339135	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:124339135G>A	uc001lgk.1	+	10	827	c.721G>A	c.(721-723)GAC>AAC	p.D241N	DMBT1_uc001lgl.1_Missense_Mutation_p.D241N|DMBT1_uc001lgm.1_Missense_Mutation_p.D241N|DMBT1_uc009xzz.1_Missense_Mutation_p.D241N|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Missense_Mutation_p.D93N	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	241	SRCR 2.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GAATGGAGGCGACAGGTGTCG	0.547													51	313					0	0	0.003610	0	0
C10orf137	26098	broad.mit.edu	37	10	127412404	127412404	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:127412404C>T	uc001liq.1	+	4	702	c.409C>T	c.(409-411)CCC>TCC	p.P137S	C10orf137_uc001lin.2_Missense_Mutation_p.P137S|C10orf137_uc001lio.1_Missense_Mutation_p.P137S|C10orf137_uc001lip.1_5'UTR	NM_015608	NP_056423	Q3B7T1	EDRF1_HUMAN	erythroid differentiation-related factor 1	137					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	binding			ovary(5)|large_intestine(3)|lung(2)	10		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				CCTGAAAATTCCCTACAGCAA	0.343													9	114					0	0	0.000978	0	0
Unknown	0	broad.mit.edu	37	10	134627746	134627746	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:134627746G>A	uc010qux.1	-	46	6476	c.6476C>T	c.(6475-6477)CCT>CTT	p.P2159L		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		GATGGAGACAGGAGTTAGCAT	0.557													7	23					0	0	0.001984	0	0
TUBGCP2	10844	broad.mit.edu	37	10	135095760	135095761	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr10:135095760_135095761GG>AA	uc001lmg.1	-	16	2732_2733	c.2375_2376CC>TT	c.(2374-2376)GCC>GTT	p.A792V	TUBGCP2_uc001lmf.1_Missense_Mutation_p.A385V|TUBGCP2_uc010qvc.1_Missense_Mutation_p.A820V|TUBGCP2_uc009ybk.1_Missense_Mutation_p.A815V|TUBGCP2_uc010qvd.1_Missense_Mutation_p.A662V|TUBGCP2_uc001lmh.1_RNA	NM_006659	NP_006650	Q9BSJ2	GCP2_HUMAN	tubulin, gamma complex associated protein 2	792					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytoplasmic microtubule|cytosol|spindle pole	protein binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.87e-06)|all cancers(32;8.98e-06)|Epithelial(32;1.15e-05)		CCCGCTCCTCGGCCCCTGCGGG	0.668													4	17					0	0	0.004672	0	0
OR51F2	119694	broad.mit.edu	37	11	4843076	4843076	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:4843076G>A	uc010qyn.1	+	1	461	c.461G>A	c.(460-462)CGA>CAA	p.R154Q		NM_001004753	NP_001004753	Q8NH61	O51F2_HUMAN	olfactory receptor, family 51, subfamily F,	154	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACCAATGCCCGAATTGCCAAG	0.463													51	148					0	0	0.003610	0	0
OR51S1	119692	broad.mit.edu	37	11	4869859	4869859	+	Missense_Mutation	SNP	G	A	A	rs142743963	byFrequency	TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:4869859G>A	uc010qyo.1	-	1	580	c.580C>T	c.(580-582)CGT>TGT	p.R194C		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	194	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		CAGGCCAAACGAGCCACATCT	0.552													14	73					0	0	0.003163	0	0
OR52A1	23538	broad.mit.edu	37	11	5173354	5173354	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:5173354C>T	uc010qyy.1	-	1	246	c.246G>A	c.(244-246)AAG>AAA	p.K82K		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	82	Extracellular (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTCCAAGCATCTTTGGCATAA	0.438													5	38					0	0	0.000602	0	0
OR52E6	390078	broad.mit.edu	37	11	5862614	5862614	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:5862614C>T	uc010qzq.1	-	1	514	c.514G>A	c.(514-516)GGA>AGA	p.G172R	TRIM5_uc001mbq.1_Intron	NM_001005167	NP_001005167	Q96RD3	O52E6_HUMAN	olfactory receptor, family 52, subfamily E,	172	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.55e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATACGATGTCCACAGAAGGGC	0.488													12	98					0	0	0.000978	0	0
OR52E4	390081	broad.mit.edu	37	11	5905803	5905803	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:5905803T>G	uc010qzs.1	+	1	281	c.281T>G	c.(280-282)ATC>AGC	p.I94S	TRIM5_uc001mbq.1_Intron	NM_001005165	NP_001005165	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTCCAAGAGATCAGCTTTGGG	0.458													20	90					0	0	0.000958	0	0
OR2AG2	338755	broad.mit.edu	37	11	6789510	6789510	+	Missense_Mutation	SNP	G	A	A	rs150417998		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:6789510G>A	uc001meq.1	-	1	679	c.679C>T	c.(679-681)CGT>TGT	p.R227C		NM_001004490	NP_001004490	A6NM03	O2AG2_HUMAN	olfactory receptor, family 2, subfamily AG,	227	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.15e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GATGGCATACGAAGCACAGTG	0.483													7	23					0	0	0.001984	0	0
OR5P3	120066	broad.mit.edu	37	11	7847391	7847391	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:7847391G>A	uc010rbg.1	-	1	129	c.129C>T	c.(127-129)ATC>ATT	p.I43I		NM_153445	NP_703146	Q8WZ94	OR5P3_HUMAN	olfactory receptor, family 5, subfamily P,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CAATTATGCTGATATTACCCA	0.363													13	72					0	0	0.001855	0	0
UEVLD	55293	broad.mit.edu	37	11	18566188	18566188	+	Missense_Mutation	SNP	C	T	T	rs146073687	byFrequency	TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:18566188C>T	uc001mot.2	-	9	1122	c.1042G>A	c.(1042-1044)GAG>AAG	p.E348K	UEVLD_uc001mou.2_Missense_Mutation_p.E348K|UEVLD_uc010rde.1_Missense_Mutation_p.E218K|UEVLD_uc010rdf.1_Missense_Mutation_p.E326K|UEVLD_uc010rdg.1_Missense_Mutation_p.E218K|UEVLD_uc001mov.2_Missense_Mutation_p.E326K	NM_001040697	NP_001035787	Q8IX04	UEVLD_HUMAN	ubiquitin-conjugating enzyme E2-like isoform a	348					cellular carbohydrate metabolic process|protein modification process|protein transport		binding|oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor				0						TCTCCTTGCTCGCCAATAACC	0.254													21	91					0	0	0.002299	0	0
CCDC73	493860	broad.mit.edu	37	11	32675583	32675583	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:32675583C>T	uc001mtv.2	-	11	819	c.775G>A	c.(775-777)GAA>AAA	p.E259K	CCDC73_uc001mtw.1_Missense_Mutation_p.E259K	NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	259	Potential.									ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					AATTCCAATTCCTTTAAAATT	0.269													6	44					0	0	0.001984	0	0
NAT10	55226	broad.mit.edu	37	11	34160824	34160824	+	Silent	SNP	C	T	T	rs113424951		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:34160824C>T	uc001mvk.2	+	22	2542	c.2298C>T	c.(2296-2298)GCC>GCT	p.A766A	NAT10_uc010ren.1_Silent_p.A694A	NM_024662	NP_078938	Q9H0A0	NAT10_HUMAN	N-acetyltransferase 10 isoform a	766	Required for localization to the nucleolus and midbody.					nucleolus	ATP binding|N-acetyltransferase activity|protein binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0119)|all_hematologic(20;0.0231)				GGCTTGCAGCCTTCTGGAAAG	0.582													20	80					0	0	0.001523	0	0
TP53I11	9537	broad.mit.edu	37	11	44958373	44958373	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:44958373G>A	uc001myi.2	-	8	920	c.315C>T	c.(313-315)CTC>CTT	p.L105L	TP53I11_uc001myf.1_RNA|TP53I11_uc001myj.2_Silent_p.L105L|TP53I11_uc001myk.2_Silent_p.L105L|TP53I11_uc001myl.2_Silent_p.L105L|TP53I11_uc001mym.2_Silent_p.L52L	NM_006034	NP_006025	O14683	P5I11_HUMAN	p53-induced protein	105	Extracellular (Potential).				negative regulation of cell proliferation|response to stress	integral to membrane				ovary(1)	1						CACCGCCGTAGAGGCGGATGG	0.692											OREG0020923	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	26					0	0	0.003080	0	0
AMBRA1	55626	broad.mit.edu	37	11	46563511	46563511	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:46563511C>T	uc010rgu.1	-	7	2416	c.2056G>A	c.(2056-2058)GAG>AAG	p.E686K	AMBRA1_uc010rgt.1_Missense_Mutation_p.E252K|AMBRA1_uc009ylc.1_Missense_Mutation_p.E686K|AMBRA1_uc001ncu.1_Missense_Mutation_p.E596K|AMBRA1_uc001ncv.2_Missense_Mutation_p.E596K|AMBRA1_uc001ncw.2_Missense_Mutation_p.E596K|AMBRA1_uc001ncx.2_Missense_Mutation_p.E686K	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	686					autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		AGTGAATCCTCCTCAGAGCTC	0.488													5	78					0	0	0.001168	0	0
OR4X1	390113	broad.mit.edu	37	11	48286288	48286288	+	Silent	SNP	G	A	A	rs140713653		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:48286288G>A	uc010rht.1	+	1	876	c.876G>A	c.(874-876)GTG>GTA	p.V292V		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	292	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.V292V(1)		ovary(1)|pancreas(1)|skin(1)	3						ATGCTGAAGTGAAAAATGCCA	0.348													11	35					0	0	0.000673	0	0
OR5M1	390168	broad.mit.edu	37	11	56380166	56380166	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:56380166G>A	uc001nja.1	-	1	813	c.813C>T	c.(811-813)TCC>TCT	p.S271S		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						CAGTTATTTTGGACTCCTCTA	0.423													47	146					0	0	0.003214	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57077973	57077973	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:57077973G>A	uc001njr.2	-	5	2524	c.2212C>T	c.(2212-2214)CCA>TCA	p.P738S	TNKS1BP1_uc001njs.2_Missense_Mutation_p.P738S|TNKS1BP1_uc009ymd.1_Missense_Mutation_p.P189S	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	738	Pro-rich.|Acidic.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				CTGGGCTGTGGGTCTCCTGTG	0.512													11	58					0	0	0.001368	0	0
OR4D9	390199	broad.mit.edu	37	11	59282667	59282667	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:59282667C>T	uc010rkv.1	+	1	282	c.282C>T	c.(280-282)TTC>TTT	p.F94F		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCATCTCCTTCAGTGGCTGTG	0.473													16	70					0	0	0.004990	0	0
VWCE	220001	broad.mit.edu	37	11	61048165	61048165	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:61048165C>T	uc001nra.2	-	9	1534	c.1255G>A	c.(1255-1257)GTG>ATG	p.V419M	VWCE_uc001nrb.2_RNA	NM_152718	NP_689931	Q96DN2	VWCE_HUMAN	von Willebrand factor C and EGF domains	419	VWFC 1.					extracellular region	calcium ion binding			ovary(1)	1						TCACACCTCACCTTTTCACAG	0.587													5	38					0	0	0.000602	0	0
UBXN1	51035	broad.mit.edu	37	11	62445872	62445872	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:62445872A>T	uc001nul.1	-	4	361	c.229T>A	c.(229-231)TCT>ACT	p.S77T	UBXN1_uc001nuj.2_Missense_Mutation_p.S77T|UBXN1_uc001num.1_Missense_Mutation_p.S77T|UBXN1_uc001nuk.2_Missense_Mutation_p.S42T|UBXN1_uc010rme.1_Missense_Mutation_p.S77T|UBXN1_uc010rmf.1_Missense_Mutation_p.S77T	NM_015853	NP_056937	Q04323	UBXN1_HUMAN	UBX domain protein 1	77	Interaction with BRCA1.				negative regulation of proteasomal ubiquitin-dependent protein catabolic process|negative regulation of protein ubiquitination|proteasomal ubiquitin-dependent protein catabolic process	cytoplasm	ATPase binding|K6-linked polyubiquitin binding				0						CCGGCAGCAGAACCAGATCCT	0.473													17	81					0	0	0.000958	0	0
PYGM	5837	broad.mit.edu	37	11	64526158	64526158	+	Silent	SNP	A	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:64526158A>G	uc001oax.3	-	2	1079	c.262T>C	c.(262-264)TTA>CTA	p.L88L	PYGM_uc001oay.3_Intron	NM_005609	NP_005600	P11217	PYGM_HUMAN	muscle glycogen phosphorylase isoform 1	88					glucose metabolic process|glycogen catabolic process	cytosol	glycogen phosphorylase activity|protein binding			ovary(2)	2					Pyridoxal Phosphate(DB00114)	TAGAACTCTAAAGACAGGTAG	0.592													5	46					0	0	0.001168	0	0
TIGD3	220359	broad.mit.edu	37	11	65124431	65124431	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:65124431C>T	uc001odo.3	+	2	1315	c.1152C>T	c.(1150-1152)CCC>CCT	p.P384P		NM_145719	NP_663771	Q6B0B8	TIGD3_HUMAN	tigger transposable element derived 3	384					regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0						CACCAGTCCCCGGCGGGCTGA	0.582													20	70					0	0	0.001216	0	0
UVRAG	7405	broad.mit.edu	37	11	75852215	75852215	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:75852215G>A	uc001oxc.2	+	15	2099	c.1858G>A	c.(1858-1860)GTC>ATC	p.V620I	UVRAG_uc010rrw.1_Missense_Mutation_p.V519I|UVRAG_uc001oxd.2_Missense_Mutation_p.V248I|UVRAG_uc010rrx.1_Missense_Mutation_p.V248I|UVRAG_uc010rry.1_Missense_Mutation_p.V176I	NM_003369	NP_003360	Q9P2Y5	UVRAG_HUMAN	UV radiation resistance associated	620					DNA repair|positive regulation of autophagy	early endosome|late endosome|lysosome	protein binding			skin(4)|lung(2)	6						GTTCCACCCAGTCTCAGAAGC	0.587													8	51					0	0	0.000673	0	0
FAT3	120114	broad.mit.edu	37	11	92086160	92086160	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:92086160G>A	uc001pdj.3	+	1	899	c.882G>A	c.(880-882)GCG>GCA	p.A294A		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	294	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ATGATGGAGCGAATGGAGAGA	0.438										TCGA Ovarian(4;0.039)			121	455					0	0	0.003610	0	0
CNTN5	53942	broad.mit.edu	37	11	100061871	100061871	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:100061871C>T	uc001pga.2	+	14	1933	c.1594C>T	c.(1594-1596)CCA>TCA	p.P532S	CNTN5_uc009ywv.1_Missense_Mutation_p.P532S|CNTN5_uc001pfz.2_Missense_Mutation_p.P532S|CNTN5_uc001pgb.2_Missense_Mutation_p.P458S|CNTN5_uc010ruk.1_5'UTR	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	532	Ig-like C2-type 5.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		AGCTATTCTTCCAGACGGGAG	0.363													7	29					0	0	0.004482	0	0
CARD17	440068	broad.mit.edu	37	11	104971471	104971471	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:104971471G>A	uc001pir.1	-	2	60	c.43C>T	c.(43-45)CGT>TGT	p.R15C	CASP1_uc010rve.1_Intron|CASP1_uc010rvf.1_Intron|CASP1_uc010rvg.1_Intron|CASP1_uc010rvh.1_Intron|CASP1_uc010rvi.1_Intron	NM_001007232	NP_001007233	Q5XLA6	CAR17_HUMAN	caspase recruitment domain family, member 17	15	CARD.				proteolysis|regulation of apoptosis	cytoplasm	cysteine-type endopeptidase activity|cysteine-type endopeptidase inhibitor activity			ovary(1)	1						CCCACTGAACGGATAAACTGC	0.433													13	121					0	0	0.001855	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106680984	106680984	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:106680984A>G	uc001pjg.1	-	5	1817	c.1427T>C	c.(1426-1428)TTA>TCA	p.L476S	GUCY1A2_uc010rvo.1_Missense_Mutation_p.L497S|GUCY1A2_uc009yxn.1_Missense_Mutation_p.L476S	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	476					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		AGTTCTTTCTAAAGTTGCCTT	0.443													9	70					0	0	0.004482	0	0
DRD2	1813	broad.mit.edu	37	11	113295295	113295295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:113295295C>T	uc001pnz.2	-	1	400	c.79G>A	c.(79-81)GGG>AGG	p.G27R	DRD2_uc010rwv.1_Missense_Mutation_p.G27R|DRD2_uc001poa.3_Missense_Mutation_p.G27R|DRD2_uc001pob.3_Missense_Mutation_p.G27R|DRD2_uc009yyr.1_Missense_Mutation_p.G27R	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	27	Extracellular (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	TCCGCCTTCCCGTCTGACCCG	0.582													19	56					0	0	0.001523	0	0
NNMT	4837	broad.mit.edu	37	11	114168875	114168875	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:114168875G>A	uc001por.1	+	4	621	c.357G>A	c.(355-357)GGG>GGA	p.G119G	NNMT_uc001pos.1_Silent_p.G119G	NM_006169	NP_006160	P40261	NNMT_HUMAN	nicotinamide N-methyltransferase	119					xenobiotic metabolic process	cytosol	nicotinamide N-methyltransferase activity|pyridine N-methyltransferase activity			ovary(1)	1		all_cancers(61;4.83e-16)|all_epithelial(67;7.28e-09)|all_hematologic(158;0.000135)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.79e-06)|Epithelial(105;1.32e-05)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.128)	Niacin(DB00627)	ATCTTGAAGGGAACAGGTAGA	0.488													10	54					0	0	0.000673	0	0
HINFP	25988	broad.mit.edu	37	11	119001634	119001634	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:119001634C>T	uc001pvp.2	+	4	570	c.381C>T	c.(379-381)GAC>GAT	p.D127D	HINFP_uc010rzb.1_Silent_p.D127D|HINFP_uc001pvq.2_Silent_p.D127D|HINFP_uc001pvr.2_5'Flank	NM_015517	NP_056332	Q9BQA5	HINFP_HUMAN	MBD2 (methyl-CpG-binding protein)-interacting	127					DNA damage checkpoint|DNA repair|establishment of protein localization|in utero embryonic development|myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription involved in G1/S phase of mitotic cell cycle	Cajal body	enzyme binding|histone binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription regulatory region DNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						ATATCCCTGACCACTTCCTGT	0.577													12	55					0	0	0.000978	0	0
PDZD3	79849	broad.mit.edu	37	11	119058144	119058144	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:119058144G>A	uc001pwb.2	+	3	1218	c.694G>A	c.(694-696)GGT>AGT	p.G232S	PDZD3_uc001pvy.2_Missense_Mutation_p.G166S|PDZD3_uc001pvz.2_Missense_Mutation_p.G166S|PDZD3_uc010rzd.1_Missense_Mutation_p.G153S|PDZD3_uc001pwa.2_5'UTR			Q86UT5	NHRF4_HUMAN	RecName: Full=Na(+)/H(+) exchange regulatory cofactor NHE-RF4;          Short=NHERF-4; AltName: Full=PDZ domain-containing protein 3; AltName: Full=PDZ domain-containing protein 2; AltName: Full=Intestinal and kidney-enriched PDZ protein; AltName: Full=Sodium-hydrogen exchanger regulatory factor 4;	232	PDZ 2.				cGMP-mediated signaling|ion transport|negative regulation of cGMP biosynthetic process|response to toxin|water transport	apical part of cell|brush border|cytosol|membrane fraction|subapical complex	guanylate cyclase inhibitor activity|ion channel inhibitor activity|protein C-terminus binding			breast(1)	1	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0523)|Breast(348;0.174)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;7.52e-05)		AGATGAGGGTGGTTTTGGCTT	0.632													9	22					0	0	0.000978	0	0
PVRL1	5818	broad.mit.edu	37	11	119549388	119549388	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:119549388G>C	uc001pwv.2	-	2	339	c.167C>G	c.(166-168)CCG>CGG	p.P56R	PVRL1_uc001pwu.1_Missense_Mutation_p.P56R|PVRL1_uc001pww.2_Missense_Mutation_p.P56R	NM_002855	NP_002846	Q15223	PVRL1_HUMAN	poliovirus receptor-related 1 isoform 1	56	Extracellular (Potential).|Ig-like V-type.				adherens junction organization|cell junction assembly|entry of virus into host cell|heterophilic cell-cell adhesion|homophilic cell adhesion|immune response	cell-cell adherens junction|extracellular region|integral to membrane	cell adhesion molecule binding|coreceptor activity|protein homodimerization activity				0		Breast(348;0.037)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.29e-05)		GCTGGGAAGCGGGTTGGCAAA	0.592													3	21					0	0	0.004672	0	0
LOC341056	341056	broad.mit.edu	37	11	122889164	122889164	+	RNA	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:122889164G>A	uc010rzt.1	+	1		c.891G>A				NR_027288				full-length cDNA clone CS0DC021YJ17 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).												0						CTCCAGATACGAAACGATGTG	0.493													6	28					0	0	0.001984	0	0
OR10G9	219870	broad.mit.edu	37	11	123893831	123893831	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:123893831C>T	uc010sad.1	+	1	112	c.112C>T	c.(112-114)CTG>TTG	p.L38L		NM_001001953	NP_001001953	Q8NGN4	O10G9_HUMAN	olfactory receptor, family 10, subfamily G,	38	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		GCTCACTGTGCTGGGGAACCT	0.572													7	116					0	0	0.004990	0	0
OR10G7	390265	broad.mit.edu	37	11	123909597	123909597	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:123909597G>A	uc001pzq.1	-	1	112	c.112C>T	c.(112-114)CTG>TTG	p.L38L		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	38	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		AGGTTCCCCAGCACAGTGAGC	0.572													10	70					0	0	0.001855	0	0
FOXRED1	55572	broad.mit.edu	37	11	126141523	126141523	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:126141523C>T	uc001qdi.2	+	2	324	c.277C>T	c.(277-279)CGA>TGA	p.R93*	SRPR_uc001qdh.2_5'Flank|SRPR_uc010sbm.1_5'Flank|FOXRED1_uc010sbn.1_Intron|FOXRED1_uc010sbo.1_Intron|FOXRED1_uc010sbp.1_Intron|FOXRED1_uc010sbq.1_5'UTR|FOXRED1_uc001qdj.2_5'UTR|FOXRED1_uc010sbr.1_Nonsense_Mutation_p.R79*|FOXRED1_uc001qdk.2_5'UTR	NM_017547	NP_060017	Q96CU9	FXRD1_HUMAN	FAD-dependent oxidoreductase domain containing	93						integral to membrane|mitochondrion	oxidoreductase activity|protein binding				0	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0739)|all_lung(97;0.0798)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0729)		AGGTGCTATTCGAGTGCTAGT	0.562													12	63					0	0	0.001368	0	0
C11orf45	219833	broad.mit.edu	37	11	128772520	128772520	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:128772520C>T	uc001qeu.2	-	4	564	c.370G>A	c.(370-372)GAT>AAT	p.D124N	KCNJ5_uc001qet.2_Intron|KCNJ5_uc009zck.2_Intron|C11orf45_uc009zcl.2_Missense_Mutation_p.D124N|C11orf45_uc001qev.2_Missense_Mutation_p.D124N	NM_145013	NP_659450	Q8TAV5	CK045_HUMAN	hypothetical protein LOC219833 precursor	124						extracellular region					0	all_hematologic(175;0.0641)	Lung NSC(97;0.00521)|Breast(109;0.00715)|all_lung(97;0.0111)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.00531)|LUSC - Lung squamous cell carcinoma(976;0.0193)|Lung(977;0.0195)		TCTCTACTATCATGGGCCTTG	0.587													7	32					0	0	0.001984	0	0
ST14	6768	broad.mit.edu	37	11	130079580	130079580	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:130079580C>T	uc001qfw.2	+	19	2623	c.2430C>T	c.(2428-2430)TCC>TCT	p.S810S		NM_021978	NP_068813	Q9Y5Y6	ST14_HUMAN	matriptase	810	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(2)|skin(2)|central_nervous_system(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000602)|Breast(109;0.000962)|all_lung(97;0.00126)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0183)|Lung(977;0.228)	Urokinase(DB00013)	GACCCCTGTCCAGCGTGGAGG	0.711													6	24					0	0	0.001984	0	0
IGSF9B	22997	broad.mit.edu	37	11	133806053	133806053	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr11:133806053G>A	uc001qgx.3	-	6	947	c.716C>T	c.(715-717)ACC>ATC	p.T239I	IGSF9B_uc001qgy.1_Missense_Mutation_p.T81I	NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	239	Extracellular (Potential).|Ig-like 3.					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		GATGTTGACGGTGATGTTCTC	0.617													4	12					0	0	0.000248	0	0
B4GALNT3	283358	broad.mit.edu	37	12	670545	670545	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:670545C>T	uc001qii.1	+	20	2925	c.2925C>T	c.(2923-2925)TCC>TCT	p.S975S	B4GALNT3_uc001qik.1_Silent_p.S524S	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	975	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			AGCGTCTCTCCCTCAGGAATT	0.612													6	22					0	0	0.003080	0	0
PLEKHG6	55200	broad.mit.edu	37	12	6424799	6424800	+	Missense_Mutation	DNP	TC	CT	CT			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:6424799_6424800TC>CT	uc001qnr.2	+	5	687_688	c.539_540TC>CT	c.(538-540)CTC>CCT	p.L180P	PLEKHG6_uc001qns.2_Missense_Mutation_p.L180P|PLEKHG6_uc010sew.1_Missense_Mutation_p.L180P|PLEKHG6_uc010sex.1_Missense_Mutation_p.L148P	NM_018173	NP_060643	Q3KR16	PKHG6_HUMAN	pleckstrin homology domain-containing family G	180	DH.				regulation of Rho protein signal transduction	cleavage furrow|cytoplasm|spindle pole	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|skin(1)	2						GTGAGAAAGCTCAAGATCATGA	0.634													12	18					0	0	0.004672	0	0
CD4	920	broad.mit.edu	37	12	6909591	6909591	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:6909591C>T	uc001qqv.1	+	3	413	c.168C>T	c.(166-168)TCC>TCT	p.S56S	CD4_uc009zez.1_Intron|CD4_uc009zfa.1_Intron|CD4_uc009zfb.1_Intron|CD4_uc010sfj.1_Intron|CD4_uc009zfc.1_Intron|CD4_uc010sfk.1_Intron|CD4_uc010sfl.1_Intron	NM_000616	NP_000607	P01730	CD4_HUMAN	CD4 antigen precursor	56	Extracellular (Potential).|Ig-like V-type.				cell adhesion|entry into host cell|immune response|induction by virus of host cell-cell fusion|initiation of viral infection|maintenance of protein location in cell|positive regulation of interleukin-2 biosynthetic process|positive regulation of protein kinase activity|protein palmitoleylation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|T cell selection|transmembrane receptor protein tyrosine kinase signaling pathway	early endosome|endoplasmic reticulum membrane|integral to membrane|T cell receptor complex	coreceptor activity|extracellular matrix structural constituent|glycoprotein binding|MHC class II protein binding|protein homodimerization activity|protein kinase binding|transmembrane receptor activity|zinc ion binding				0		Myeloproliferative disorder(1001;0.0122)				GGAAAAACTCCAACCAGATAA	0.478													10	50					0	0	0.000673	0	0
PHB2	11331	broad.mit.edu	37	12	7079698	7079698	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:7079698C>T	uc001qsd.2	-	1	219	c.9G>A	c.(7-9)CAG>CAA	p.Q3Q	PHB2_uc010sft.1_Silent_p.Q3Q|PHB2_uc010sfu.1_Silent_p.Q3Q|EMG1_uc009zfo.2_5'Flank|EMG1_uc001qsh.3_5'Flank|EMG1_uc010sfv.1_5'Flank	NM_001144831	NP_001138303	Q99623	PHB2_HUMAN	prohibitin 2 isoform 1	3					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial inner membrane|nucleus	estrogen receptor binding|receptor activity			ovary(2)|pancreas(1)	3						CCTTCAAGTTCTGGGCCATGT	0.706													10	32					0	0	0.000673	0	0
CD163	9332	broad.mit.edu	37	12	7635291	7635291	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:7635291G>A	uc001qsz.3	-	14	3323	c.3195C>T	c.(3193-3195)TTC>TTT	p.F1065F	CD163_uc001qta.3_Silent_p.F1065F|CD163_uc009zfw.2_Silent_p.F1098F	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	1065	Helical; (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						ATAATGCGACGAAAATGGCCA	0.423													28	102					0	0	0.001271	0	0
CLEC4C	170482	broad.mit.edu	37	12	7899916	7899916	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:7899916C>T	uc001qtg.1	-	1	203	c.29G>A	c.(28-30)CGA>CAA	p.R10Q	CLEC4C_uc001qth.1_Missense_Mutation_p.R10Q|CLEC4C_uc001qti.1_Missense_Mutation_p.R10Q	NM_130441	NP_569708	Q8WTT0	CLC4C_HUMAN	C-type lectin domain family 4, member C isoform	10	Cytoplasmic (Potential).				innate immune response	integral to membrane	sugar binding			ovary(2)|skin(1)	3				Kidney(36;0.0915)		GTGCTTACCTCGGTCTTGAGG	0.493													19	125					0	0	0.002780	0	0
CLEC12A	160364	broad.mit.edu	37	12	10124234	10124234	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:10124234G>A	uc001qwr.3	+	1	227	c.39G>A	c.(37-39)CAG>CAA	p.Q13Q	CLEC12A_uc001qwq.2_Silent_p.Q23Q|CLEC12A_uc001qws.3_Silent_p.Q13Q|CLEC12A_uc001qwt.2_5'UTR	NM_138337	NP_612210	Q5QGZ9	CL12A_HUMAN	myeloid inhibitory C-type lectin-like receptor	13	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity|sugar binding			skin(1)	1						TTCAATTCCAGAACTCCAGTG	0.323													15	75					0	0	0.004007	0	0
PRB2	653247	broad.mit.edu	37	12	11546713	11546713	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:11546713C>T	uc010shk.1	-	3	334	c.299G>A	c.(298-300)GGA>GAA	p.G100E		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TGGGGGTGGTCCTTGTGGCTT	0.612													62	335					0	0	0.003610	0	0
GRIN2B	2904	broad.mit.edu	37	12	13724872	13724872	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:13724872G>A	uc001rbt.2	-	10	2216	c.2037C>T	c.(2035-2037)CCC>CCT	p.P679P		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	679	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AGCGGAAAGGGGGTGAGAAGT	0.338													10	40					0	0	0.000443	0	0
DERA	51071	broad.mit.edu	37	12	16111241	16111241	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:16111241C>T	uc001rde.2	+	3	381	c.249C>T	c.(247-249)CTC>CTT	p.L83L	DERA_uc010shx.1_5'UTR	NM_015954	NP_057038	Q9Y315	DEOC_HUMAN	deoxyribose-phosphate aldolase-like	83					deoxyribonucleoside catabolic process|deoxyribonucleotide catabolic process	cytoplasm	deoxyribose-phosphate aldolase activity|protein binding				0		Hepatocellular(102;0.121)				GGGAAGATCTCTTAAAAGCTT	0.343													5	10					0	0	0.000602	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21013995	21013995	+	Missense_Mutation	SNP	C	T	T	rs150039066		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:21013995C>T	uc001rek.2	+	5	530	c.404C>T	c.(403-405)TCA>TTA	p.S135L	SLCO1B3_uc001rel.2_Missense_Mutation_p.S135L|SLCO1B3_uc010sil.1_Missense_Mutation_p.S135L|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_5'Flank	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	135	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					TCAGAAAATTCAACATCAAGT	0.284													9	48					0	0	0.004482	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21422553	21422553	+	Missense_Mutation	SNP	C	T	T	rs150224028	byFrequency	TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:21422553C>T	uc001rer.2	-	14	2193	c.1942G>A	c.(1942-1944)GAA>AAA	p.E648K	SLCO1A2_uc001res.2_Missense_Mutation_p.E648K|SLCO1A2_uc010siq.1_Missense_Mutation_p.E516K|SLCO1A2_uc010sio.1_Missense_Mutation_p.E516K|SLCO1A2_uc010sip.1_Missense_Mutation_p.E516K	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	648	Cytoplasmic (Potential).				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						CACTCATTTTCCTTCCCTTTG	0.333													21	95					0	0	0.002299	0	0
KRAS	3845	broad.mit.edu	37	12	25378647	25378647	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:25378647T>G	uc001rgp.1	-	4	532	c.351A>C	c.(349-351)AAA>AAC	p.K117N	KRAS_uc001rgq.1_Missense_Mutation_p.K117N	NM_033360	NP_203524	P01116	RASK_HUMAN	c-K-ras2 protein isoform a precursor	117	GTP.		K -> N (in a colorectal cancer sample; somatic mutation).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding	p.K117N(8)		large_intestine(12391)|pancreas(3285)|lung(2847)|biliary_tract(521)|ovary(443)|endometrium(339)|haematopoietic_and_lymphoid_tissue(318)|stomach(203)|thyroid(149)|prostate(85)|soft_tissue(77)|small_intestine(62)|upper_aerodigestive_tract(59)|cervix(49)|urinary_tract(48)|skin(38)|liver(31)|breast(28)|testis(17)|oesophagus(15)|central_nervous_system(9)|peritoneum(6)|salivary_gland(6)|kidney(5)|gastrointestinal_tract_(site_indeterminate)(5)|thymus(5)|eye(4)|autonomic_ganglia(2)|bone(2)|genital_tract(1)|penis(1)|adrenal_gland(1)	21052	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)			GCAAATCACATTTATTTCCTA	0.358		119	Mis		pancreatic|colorectal|lung|thyroid|AML|others				Cardiofaciocutaneous_syndrome|Noonan_syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			24	79					0	0	0.003954	0	0
Unknown	0	broad.mit.edu	37	12	31300929	31300929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:31300929G>A	uc010sjy.1	-	11	1331	c.1331C>T	c.(1330-1332)CCA>CTA	p.P444L						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		AAGCTGCTTTGGTTCTGGAAC	0.428													69	237					0	0	0.003610	0	0
CNTN1	1272	broad.mit.edu	37	12	41423019	41423019	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:41423019C>T	uc001rmm.1	+	23	3091	c.2978C>T	c.(2977-2979)TCA>TTA	p.S993L	CNTN1_uc001rmn.1_Missense_Mutation_p.S982L	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	993	Fibronectin type-III 4.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				GTCAAAATTTCAGGTAAGTGA	0.468													12	83					0	0	0.001855	0	0
PRICKLE1	144165	broad.mit.edu	37	12	42858523	42858523	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:42858523C>T	uc010skv.1	-	7	1600	c.1313G>A	c.(1312-1314)CGA>CAA	p.R438Q	PRICKLE1_uc001rnl.2_Missense_Mutation_p.R438Q|PRICKLE1_uc010skw.1_Missense_Mutation_p.R438Q|PRICKLE1_uc001rnm.2_Missense_Mutation_p.R438Q	NM_001144881	NP_001138353	Q96MT3	PRIC1_HUMAN	prickle homolog 1	438					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein import into nucleus	cytosol|nuclear membrane	zinc ion binding			ovary(3)|skin(1)	4	all_cancers(12;4.25e-05)|Breast(8;0.176)			GBM - Glioblastoma multiforme(48;0.2)		CTCACTGGCTCGAATATCCAT	0.418													10	67					0	0	0.001368	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45459056	45459056	+	RNA	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:45459056C>T	uc001rol.2	-	1		c.139G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						AATTGGAGTTCGTTTCCTTCC	0.443													7	27					0	0	0.003080	0	0
ARID2	196528	broad.mit.edu	37	12	46244297	46244298	+	Nonsense_Mutation	DNP	AC	TT	TT			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:46244297_46244298AC>TT	uc001ros.1	+	15	2391_2392	c.2391_2392AC>TT	c.(2389-2394)CCACAG>CCTTAG	p.Q798*	ARID2_uc001ror.2_Nonsense_Mutation_p.Q798*|ARID2_uc009zkg.1_Nonsense_Mutation_p.Q254*|ARID2_uc009zkh.1_Nonsense_Mutation_p.Q425*|ARID2_uc001rou.1_Nonsense_Mutation_p.Q132*	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	798	Gln-rich.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		AAGCTGTCCCACAGAGTCATAT	0.46													9	35					0	0	0.004672	0	0
ARID2	196528	broad.mit.edu	37	12	46245486	46245486	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:46245486C>T	uc001ros.1	+	15	3580	c.3580C>T	c.(3580-3582)CAG>TAG	p.Q1194*	ARID2_uc001ror.2_Nonsense_Mutation_p.Q1194*|ARID2_uc009zkg.1_Nonsense_Mutation_p.Q650*|ARID2_uc009zkh.1_Nonsense_Mutation_p.Q821*|ARID2_uc001rou.1_Nonsense_Mutation_p.Q528*	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	1194					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		AAATGCAACTCAGCTCATTGC	0.498													13	58					0	0	0.001855	0	0
TFCP2	7024	broad.mit.edu	37	12	51512481	51512481	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:51512481G>A	uc001rxw.2	-	2	656	c.197C>T	c.(196-198)CCT>CTT	p.P66L	TFCP2_uc001rxv.1_Missense_Mutation_p.P66L|TFCP2_uc009zlx.1_Missense_Mutation_p.P66L|TFCP2_uc001rxx.2_Missense_Mutation_p.P66L|TFCP2_uc009zly.1_5'UTR	NM_005653	NP_005644	Q12800	TFCP2_HUMAN	transcription factor CP2	66					regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ATATTGAAAAGGCAGGATTTT	0.383													21	72					0	0	0.001523	0	0
KRT80	144501	broad.mit.edu	37	12	52585451	52585452	+	Missense_Mutation	DNP	AG	GA	GA			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:52585451_52585452AG>GA	uc001rzx.2	-	1	333_334	c.235_236CT>TC	c.(235-237)CTG>TCG	p.L79S	KRT80_uc001rzy.2_Missense_Mutation_p.L79S	NM_182507	NP_872313	Q6KB66	K2C80_HUMAN	keratin 80 isoform a	79	Head.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.108)		CTGGTTCTTCAGCTGCTGAACA	0.564													21	87					0	0	0.004672	0	0
SP1	6667	broad.mit.edu	37	12	53800524	53800524	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:53800524G>A	uc001scw.2	+	4	1928	c.1831G>A	c.(1831-1833)GAC>AAC	p.D611N	SP1_uc010sog.1_Missense_Mutation_p.D604N	NM_138473	NP_612482	P08047	SP1_HUMAN	Sp1 transcription factor isoform a	611					positive regulation by host of viral transcription|positive regulation of transcription from RNA polymerase II promoter	cytoplasm	double-stranded DNA binding|histone deacetylase binding|HMG box domain binding|protein C-terminus binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(357;0.00527)		CTACTGTAAAGACAGTGAAGG	0.453													9	24					0	0	0.000443	0	0
NFE2	4778	broad.mit.edu	37	12	54686865	54686865	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:54686865G>A	uc009znk.2	-	2	925	c.415C>T	c.(415-417)CAA>TAA	p.Q139*	NFE2_uc001sfq.2_Nonsense_Mutation_p.Q139*|NFE2_uc001sfr.3_Nonsense_Mutation_p.Q139*|NFE2_uc009znl.2_Nonsense_Mutation_p.Q139*	NM_006163	NP_006154	Q16621	NFE2_HUMAN	nuclear factor, erythroid derived 2 isoform 1	139	Transactivation domain.				blood circulation|blood coagulation|multicellular organismal development|nucleosome disassembly|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	actin cytoskeleton|cytoplasm|PML body	protein dimerization activity|protein N-terminus binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|WW domain binding				0						GGGTCTTCTTGGGGCTTAGGT	0.592													30	137					0	0	0.002445	0	0
ZNF385A	25946	broad.mit.edu	37	12	54767880	54767881	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:54767880_54767881GG>AA	uc001sfw.1	-	3	420_421	c.237_238CC>TT	c.(235-240)GCCCGA>GCTTGA	p.R80*	ZNF385A_uc001sfv.1_Nonsense_Mutation_p.R61*|ZNF385A_uc009zno.1_RNA|ZNF385A_uc010sov.1_Nonsense_Mutation_p.R80*|ZNF385A_uc001sfx.1_Nonsense_Mutation_p.R80*|ZNF385A_uc001sfy.3_Nonsense_Mutation_p.R100*|ZNF385A_uc001sfz.3_Nonsense_Mutation_p.R100*	NM_015481	NP_056296	Q96PM9	Z385A_HUMAN	zinc finger protein 385A isoform c	80					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding|zinc ion binding			ovary(1)	1						TTGACTCGTCGGGCGTGGCGAT	0.579													11	40					0	0	0.004672	0	0
ZBTB39	9880	broad.mit.edu	37	12	57396571	57396572	+	Missense_Mutation	DNP	CC	TT	TT	rs140799751		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:57396571_57396572CC>TT	uc001sml.1	-	2	2216_2217	c.2130_2131GG>AA	c.(2128-2133)CCGGAC>CCAAAC	p.D711N	RDH16_uc010sqx.1_RNA	NM_014830	NP_055645	O15060	ZBT39_HUMAN	zinc finger and BTB domain containing 39	711					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1						AGTCAACTGTCCGGGTTCTTAT	0.55													16	52					0	0	0.004672	0	0
MARS	4141	broad.mit.edu	37	12	57884380	57884380	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:57884380G>A	uc001sog.2	+	7	746	c.723G>A	c.(721-723)GAG>GAA	p.E241E	ARHGAP9_uc001sod.2_5'Flank|ARHGAP9_uc001soe.1_5'Flank|MARS_uc001sof.1_RNA|MARS_uc010srp.1_Silent_p.E114E|MARS_uc010srq.1_Silent_p.E7E	NM_004990	NP_004981	P56192	SYMC_HUMAN	methionyl-tRNA synthetase	241					methionyl-tRNA aminoacylation	cytosol	ATP binding|methionine-tRNA ligase activity|protein binding|tRNA binding			ovary(3)|central_nervous_system(1)|pancreas(1)	5			GBM - Glioblastoma multiforme(3;4.27e-41)		L-Methionine(DB00134)	CTGCTTGGGAGAAGGGCCTAG	0.527													26	116					0	0	0.001786	0	0
KIF5A	3798	broad.mit.edu	37	12	57966362	57966362	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:57966362G>A	uc001sor.1	+	15	1778	c.1570_splice	c.e15-1	p.A524_splice	KIF5A_uc010srr.1_Splice_Site_p.A435_splice	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A						blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						GCTGTCCCCAGGCCACCATGC	0.607													12	30					0	0	0.001368	0	0
LGR5	8549	broad.mit.edu	37	12	71955582	71955582	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:71955582C>T	uc001swl.2	+	8	855	c.807C>T	c.(805-807)ATC>ATT	p.I269I	LGR5_uc001swm.2_Intron|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	269	LRR 9.|Extracellular (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						GCAACAATATCAGGTCGATAC	0.368													65	309					0	0	0.003610	0	0
LUM	4060	broad.mit.edu	37	12	91502039	91502039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:91502039C>T	uc001tbm.2	-	2	1107	c.718G>A	c.(718-720)GAA>AAA	p.E240K	LUM_uc001tbn.2_RNA	NM_002345	NP_002336	P51884	LUM_HUMAN	lumican precursor	240	LRR 8.				collagen fibril organization|visual perception	extracellular space|fibrillar collagen	collagen binding|extracellular matrix structural constituent			central_nervous_system(2)	2						TCAGCCAGTTCGTTGTGAGAT	0.388													21	58					0	0	0.001523	0	0
ANO4	121601	broad.mit.edu	37	12	101510530	101510530	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:101510530G>A	uc010svm.1	+	25	3096	c.2524G>A	c.(2524-2526)GAA>AAA	p.E842K	ANO4_uc001thw.2_Missense_Mutation_p.E807K|ANO4_uc001thx.2_Missense_Mutation_p.E842K|ANO4_uc001thy.2_Missense_Mutation_p.E362K	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	842	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						ATCTGAGCCTGAATCTGATGG	0.527										HNSCC(74;0.22)			19	83					0	0	0.001216	0	0
PRDM4	11108	broad.mit.edu	37	12	108133244	108133244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:108133244C>T	uc001tmp.2	-	11	2446	c.2009G>A	c.(2008-2010)GGG>GAG	p.G670E	PRDM4_uc010sww.1_Missense_Mutation_p.G77E|PRDM4_uc001tmq.2_RNA	NM_012406	NP_036538	Q9UKN5	PRDM4_HUMAN	PR domain containing 4	670					cell proliferation|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						ATTCTTCTCCCCAGTGTGGAT	0.493													9	53					0	0	0.004482	0	0
WSCD2	9671	broad.mit.edu	37	12	108641991	108641992	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:108641991_108641992CC>TT	uc001tms.2	+	9	2313_2314	c.1569_1570CC>TT	c.(1567-1572)CTCCGG>CTTTGG	p.R524W	WSCD2_uc001tmt.2_Missense_Mutation_p.R524W|WSCD2_uc001tmu.2_Missense_Mutation_p.R292W	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	524						integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						GCTCAGGGCTCCGGAAGCTCGA	0.604													8	58					0	0	0.004672	0	0
C12orf51	283450	broad.mit.edu	37	12	112608926	112608926	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:112608926G>A	uc009zwc.2	-	61	10679	c.10661C>T	c.(10660-10662)GCC>GTC	p.A3554V		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						CTGACCTTTGGCCTCCTTCAG	0.637													4	20					0	0	0.000248	0	0
SDSL	113675	broad.mit.edu	37	12	113866236	113866236	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:113866236G>A	uc001tvi.2	+	4	396	c.186G>A	c.(184-186)AAG>AAA	p.K62K	SDSL_uc009zwh.2_Silent_p.K62K	NM_138432	NP_612441	Q96GA7	SDSL_HUMAN	serine dehydratase-like	62					cellular amino acid metabolic process		L-serine ammonia-lyase activity|L-threonine ammonia-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	TGGCCAAGAAGGGATGCAGAC	0.552													5	36					0	0	0.001168	0	0
SDSL	113675	broad.mit.edu	37	12	113866240	113866240	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:113866240T>G	uc001tvi.2	+	4	400	c.190T>G	c.(190-192)TGC>GGC	p.C64G	SDSL_uc009zwh.2_Missense_Mutation_p.C64G	NM_138432	NP_612441	Q96GA7	SDSL_HUMAN	serine dehydratase-like	64					cellular amino acid metabolic process		L-serine ammonia-lyase activity|L-threonine ammonia-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	CAAGAAGGGATGCAGACACCT	0.552													4	35					0	0	0.000602	0	0
MLXIP	22877	broad.mit.edu	37	12	122619843	122619843	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:122619843C>T	uc001ubq.2	+	10	1805	c.1805C>T	c.(1804-1806)TCC>TTC	p.S602F	MLXIP_uc001ubt.2_Missense_Mutation_p.S209F	NM_014938	NP_055753	Q9HAP2	MLXIP_HUMAN	MLX interacting protein	602					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial outer membrane|nucleus	DNA binding			ovary(2)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)	Lung NSC(355;0.0659)		OV - Ovarian serous cystadenocarcinoma(86;0.000599)|Epithelial(86;0.00102)|BRCA - Breast invasive adenocarcinoma(302;0.233)		ATGTTGGCCTCCACCGTGTCC	0.602													12	38					0	0	0.002450	0	0
DNAH10	196385	broad.mit.edu	37	12	124317687	124317687	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:124317687G>A	uc001uft.3	+	26	4243	c.4218G>A	c.(4216-4218)TGG>TGA	p.W1406*		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1406	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TAGACACGTGGGAAAATATGA	0.443													4	19					0	0	0.000248	0	0
SCARB1	949	broad.mit.edu	37	12	125292418	125292418	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:125292418G>A	uc001ugo.3	-	7	1151	c.898C>T	c.(898-900)CGC>TGC	p.R300C	SCARB1_uc001ugn.3_Missense_Mutation_p.R300C|SCARB1_uc001ugm.3_Missense_Mutation_p.R300C|SCARB1_uc010tbd.1_Missense_Mutation_p.R300C|SCARB1_uc010tbe.1_Missense_Mutation_p.R259C|SCARB1_uc001ugp.3_Missense_Mutation_p.R300C	NM_005505	NP_005496	Q8WTV0	SCRB1_HUMAN	scavenger receptor class B, member 1 isoform 1	300	Extracellular (Potential).				adhesion to symbiont|cell adhesion|cholesterol efflux|cholesterol homeostasis|cholesterol import|detection of lipopolysaccharide|high-density lipoprotein particle clearance|high-density lipoprotein particle remodeling|lipopolysaccharide transport|lipoprotein metabolic process|positive regulation of cholesterol storage|positive regulation of endothelial cell migration|positive regulation of nitric-oxide synthase activity|recognition of apoptotic cell|reverse cholesterol transport|triglyceride homeostasis|wound healing	caveola	1-phosphatidylinositol binding|apolipoprotein A-I binding|high-density lipoprotein particle receptor activity|lipopolysaccharide receptor activity|low-density lipoprotein particle binding|phosphatidylserine binding|transporter activity			kidney(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000116)|Epithelial(86;0.000415)|all cancers(50;0.00395)	Phosphatidylserine(DB00144)	GCCACGAAGCGATAGGTGGGG	0.577													18	76					0	0	0.000958	0	0
GLT1D1	144423	broad.mit.edu	37	12	129360526	129360526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:129360526G>A	uc010tbh.1	+	2	112	c.103G>A	c.(103-105)GAG>AAG	p.E35K	GLT1D1_uc001uhx.1_Missense_Mutation_p.E46K|GLT1D1_uc001uhy.1_RNA	NM_144669	NP_653270	Q96MS3	GL1D1_HUMAN	glycosyltransferase 1 domain containing 1	46					biosynthetic process	extracellular region	transferase activity, transferring glycosyl groups				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.97e-06)|Epithelial(86;3.97e-05)|all cancers(50;0.00019)		AAGCCGATCTGAGATTGCAAA	0.478													48	154					0	0	0.003610	0	0
N4BP2L1	90634	broad.mit.edu	37	13	32981886	32981886	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr13:32981886C>T	uc001uuc.2	-	2	299	c.203G>A	c.(202-204)AGG>AAG	p.R68K	N4BP2L1_uc001uud.2_Missense_Mutation_p.R68K|N4BP2L1_uc010tdy.1_Missense_Mutation_p.R68K|N4BP2L1_uc001uuf.2_Missense_Mutation_p.R68K	NM_052818	NP_438169	Q5TBK1	N42L1_HUMAN	NEDD4 binding protein 2-like 1 isoform 1	68					cell killing		ATP binding			ovary(1)	1		Lung SC(185;0.0262)		all cancers(112;6.3e-06)|Epithelial(112;3.51e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00607)|BRCA - Breast invasive adenocarcinoma(63;0.0171)		AATCAGGGCCCTGGGAAAGTC	0.408													20	47					0	0	0.000958	0	0
PCDH20	64881	broad.mit.edu	37	13	61987036	61987036	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr13:61987036A>G	uc001vid.3	-	2	1560	c.1196T>C	c.(1195-1197)CTT>CCT	p.L399P	PCDH20_uc010thj.1_Missense_Mutation_p.L399P	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	372	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		TCCATTAGCAAGGATGGTGAG	0.428													35	73					0	0	0.002836	0	0
SLITRK1	114798	broad.mit.edu	37	13	84454584	84454584	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr13:84454584C>T	uc001vlk.2	-	1	1945	c.1059G>A	c.(1057-1059)TCG>TCA	p.S353S		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	353	Extracellular (Potential).|LRRNT 2.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		TCTTTAAACCCGACCCTGGGA	0.537													13	40					0	0	0.001855	0	0
TMCO3	55002	broad.mit.edu	37	13	114202694	114202694	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr13:114202694G>A	uc001vtu.3	+	12	2208	c.1847G>A	c.(1846-1848)GGG>GAG	p.G616E		NM_017905	NP_060375	Q6UWJ1	TMCO3_HUMAN	transmembrane and coiled-coil domains 3	616	Helical; (Potential).					integral to membrane	solute:hydrogen antiporter activity				0	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0145)|all_epithelial(44;0.00286)|all_lung(25;0.0273)|Breast(118;0.0411)|Lung NSC(25;0.0983)	all cancers(43;0.0317)			GTCTCTGCGGGGCTTGCCCAG	0.627													15	48					0	0	0.003163	0	0
OR11H12	440153	broad.mit.edu	37	14	19377716	19377716	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:19377716C>T	uc010tkp.1	+	1	123	c.123C>T	c.(121-123)TTC>TTT	p.F41F		NM_001013354	NP_001013372	B2RN74	O11HC_HUMAN	olfactory receptor, family 11, subfamily H,	41	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTCAGATCTTCCTCTTCTCAC	0.423													18	93					0	0	0.002299	0	0
OR4K1	79544	broad.mit.edu	37	14	20404268	20404268	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:20404268C>T	uc001vwj.1	+	1	443	c.443C>T	c.(442-444)TCC>TTC	p.S148F		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		GTGTCTATTTCCTGGGCGGTG	0.453													12	75					0	0	0.000978	0	0
TEP1	7011	broad.mit.edu	37	14	20852297	20852297	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:20852297C>T	uc001vxe.2	-	24	3474	c.3434G>A	c.(3433-3435)CGG>CAG	p.R1145Q	TEP1_uc010ahk.2_Missense_Mutation_p.R495Q|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.R1037Q|TEP1_uc010tlh.1_5'Flank	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1145					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		AAGGCGTGGCCGGGCAGGACT	0.652													13	55					0	0	0.003163	0	0
CDH24	64403	broad.mit.edu	37	14	23517672	23517672	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:23517672G>A	uc001wil.2	-	13	2237	c.1977C>T	c.(1975-1977)TTC>TTT	p.F659F	CDH24_uc001wik.3_RNA|CDH24_uc010akf.2_Silent_p.F621F	NM_022478	NP_071923	Q86UP0	CAD24_HUMAN	cadherin-like 24 isoform 1	659	Helical; (Potential).				adherens junction organization|cell junction assembly|cell-cell adhesion|homophilic cell adhesion	cell-cell junction|cell-cell junction|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|delta-catenin binding			central_nervous_system(1)	1	all_cancers(95;3.3e-05)			GBM - Glioblastoma multiforme(265;0.00654)		GCAGGGCCACGAAGAGCACCA	0.667													10	58					0	0	0.001368	0	0
CPNE6	9362	broad.mit.edu	37	14	24545597	24545597	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:24545597G>A	uc001wll.2	+	12	1186	c.1087G>A	c.(1087-1089)GGG>AGG	p.G363R	CPNE6_uc010tnv.1_Missense_Mutation_p.G418R|CPNE6_uc001wlm.2_Missense_Mutation_p.G188R|CPNE6_uc001wln.2_5'UTR	NM_006032	NP_006023	O95741	CPNE6_HUMAN	copine 6	363	VWFA.				lipid metabolic process|nervous system development|synaptic transmission|vesicle-mediated transport		calcium ion binding|transporter activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0184)		TTTTGGCTTTGGGGCTCGAAT	0.592													26	101					0	0	0.001061	0	0
TM9SF1	10548	broad.mit.edu	37	14	24662319	24662319	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:24662319C>T	uc001wnb.1	-	3	850	c.502G>A	c.(502-504)GAA>AAA	p.E168K	IPO4_uc001wmz.1_5'Flank|TM9SF1_uc010toa.1_Missense_Mutation_p.E81K|TM9SF1_uc001wna.1_RNA|TM9SF1_uc010tob.1_Missense_Mutation_p.E403K|TM9SF1_uc001wnc.2_Missense_Mutation_p.E168K|TM9SF1_uc001wnd.2_Missense_Mutation_p.E24K	NM_006405	NP_006396	O15321	TM9S1_HUMAN	transmembrane 9 superfamily member 1 isoform a	168					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)	1				GBM - Glioblastoma multiforme(265;0.0183)		CCATGGAATTCTAGGTGGAAG	0.522													19	58					0	0	0.002299	0	0
AKAP6	9472	broad.mit.edu	37	14	33014795	33014795	+	Silent	SNP	T	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:33014795T>A	uc001wrq.2	+	4	1106	c.936T>A	c.(934-936)GCT>GCA	p.A312A	AKAP6_uc010aml.2_Silent_p.A309A	NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	312					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		AAGACAATGCTTCTGCAGTCG	0.493													15	59					0	0	0.003163	0	0
MIA2	117153	broad.mit.edu	37	14	39717188	39717188	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:39717188C>T	uc001wux.2	+	4	1604	c.1410C>T	c.(1408-1410)TTC>TTT	p.F470F	MIA2_uc010amy.1_Silent_p.F401F	NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	470						extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		CTTGGAACTTCCAGAACATTC	0.318													21	74					0	0	0.003330	0	0
PRPF39	55015	broad.mit.edu	37	14	45571737	45571737	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:45571737T>C	uc001wvz.3	+	5	745	c.575T>C	c.(574-576)TTT>TCT	p.F192S	PRPF39_uc001wvy.3_Missense_Mutation_p.F71S|PRPF39_uc010and.2_5'UTR	NM_017922	NP_060392	Q86UA1	PRP39_HUMAN	PRP39 pre-mRNA processing factor 39 homolog	192	HAT 3.				mRNA processing|RNA splicing	nucleus	binding			ovary(1)|breast(1)	2						TTCAGAACTTTTGAGCATGCT	0.313													11	54					0	0	0.000978	0	0
ABHD12B	145447	broad.mit.edu	37	14	51368616	51368616	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:51368616C>T	uc001wys.2	+	10	865	c.850C>T	c.(850-852)CCT>TCT	p.P284S	ABHD12B_uc001wyq.2_Missense_Mutation_p.P177S|ABHD12B_uc001wyr.2_Missense_Mutation_p.P207S|ABHD12B_uc010any.2_RNA	NM_181533	NP_853511	Q7Z5M8	AB12B_HUMAN	abhydrolase domain containing 12B isoform b	284							hydrolase activity			breast(1)	1	all_epithelial(31;0.00481)|Breast(41;0.148)					AATAATCTTTCCTAATGATGA	0.299													5	36					0	0	0.001984	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72202091	72202091	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:72202091G>A	uc001xms.2	+	20	5517	c.5169G>A	c.(5167-5169)CAG>CAA	p.Q1723Q	SIPA1L1_uc001xmt.2_Silent_p.Q1702Q|SIPA1L1_uc001xmu.2_Silent_p.Q1702Q|SIPA1L1_uc001xmv.2_Silent_p.Q1723Q|SIPA1L1_uc010ttm.1_Silent_p.Q1177Q|SIPA1L1_uc001xmw.2_Silent_p.Q488Q	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1723					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		CTCTGGCCCAGATGAAGCCTT	0.542													25	68					0	0	0.002780	0	0
NRXN3	9369	broad.mit.edu	37	14	79454427	79454427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:79454427G>A	uc001xun.2	+	12	2577	c.2086G>A	c.(2086-2088)GAG>AAG	p.E696K	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.E821K	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	1069	EGF-like 3.|Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		GCAACAATGGGAGGGCTTCAC	0.448													12	59					0	0	0.001368	0	0
CCDC88C	440193	broad.mit.edu	37	14	91749693	91749693	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:91749693C>T	uc010aty.2	-	26	4709	c.4610G>A	c.(4609-4611)CGG>CAG	p.R1537Q	CCDC88C_uc001xzj.2_Missense_Mutation_p.R61Q|CCDC88C_uc001xzi.2_5'UTR	NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1537					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				GCCTGGGTGCCGGGCGATGGG	0.637													7	23					0	0	0.003080	0	0
TRIP11	9321	broad.mit.edu	37	14	92471846	92471846	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:92471846G>A	uc001xzy.2	-	11	3262	c.2474C>T	c.(2473-2475)TCA>TTA	p.S825L	TRIP11_uc010auf.1_Missense_Mutation_p.S561L	NM_004239	NP_004230	Q15643	TRIPB_HUMAN	thyroid hormone receptor interactor 11	825	Potential.				transcription from RNA polymerase II promoter	cytoskeleton|Golgi apparatus|membrane|nucleus	protein binding|transcription coactivator activity			ovary(6)|skin(2)|kidney(2)|central_nervous_system(1)|lung(1)|breast(1)	13				COAD - Colon adenocarcinoma(157;0.223)		CTGCAGCTTTGAACTTCTTTC	0.338			T	PDGFRB	AML								21	53					0	0	0.001523	0	0
DDX24	57062	broad.mit.edu	37	14	94526857	94526857	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:94526857C>G	uc001ycj.2	-	5	1599	c.1500G>C	c.(1498-1500)AAG>AAC	p.K500N	DDX24_uc010twq.1_Missense_Mutation_p.K457N|DDX24_uc010twr.1_Missense_Mutation_p.K250N	NM_020414	NP_065147	Q9GZR7	DDX24_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	500	Helicase ATP-binding.				RNA metabolic process	cytoplasm|nucleolus|nucleolus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|skin(1)	4		all_cancers(154;0.12)		Epithelial(152;0.114)|all cancers(159;0.19)|COAD - Colon adenocarcinoma(157;0.207)		GCGTTTGTCTCTTTGGGTTGT	0.488													35	151					0	0	0.003755	0	0
MIR154	406946	broad.mit.edu	37	14	101526114	101526114	+	RNA	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:101526114C>T	hsa-mir-154|MI0000480	+			c.23C>T			uc010awg.2_RNA|MIR496_hsa-mir-496|MI0003136_5'Flank|uc010awh.1_5'Flank|MIR377_hsa-mir-377|MI0000785_5'Flank																	0						GATAGGTTATCCGTGTTGCCT	0.498													35	100					0	0	0.004878	0	0
WDR20	91833	broad.mit.edu	37	14	102675407	102675408	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:102675407_102675408CC>TT	uc001ykz.2	+	3	949_950	c.900_901CC>TT	c.(898-903)GGCCAC>GGTTAC	p.H301Y	WDR20_uc001yky.1_Missense_Mutation_p.H44Y|WDR20_uc001yla.2_Missense_Mutation_p.H177Y|WDR20_uc001ylb.2_Missense_Mutation_p.H240Y|WDR20_uc010txu.1_Missense_Mutation_p.H332Y|WDR20_uc001ylc.2_Intron|WDR20_uc001yld.2_Missense_Mutation_p.H301Y|WDR20_uc001yle.2_Missense_Mutation_p.H240Y|WDR20_uc001ylf.2_Missense_Mutation_p.H313Y	NM_144574	NP_653175	Q8TBZ3	WDR20_HUMAN	WD repeat domain 20 isoform 2	301											0						TAGCCAGAGGCCACGGGCACAA	0.54													7	43					0	0	0.004672	0	0
TECPR2	9895	broad.mit.edu	37	14	102900623	102900623	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:102900623C>T	uc001ylw.1	+	9	1617	c.1469C>T	c.(1468-1470)TCC>TTC	p.S490F	TECPR2_uc010awl.2_Missense_Mutation_p.S490F|TECPR2_uc010txx.1_Intron	NM_014844	NP_055659	O15040	TCPR2_HUMAN	tectonin beta-propeller repeat containing 2	490							protein binding			lung(1)|central_nervous_system(1)|skin(1)	3						ACACCCTGCTCCGAATTTCCT	0.488													9	54					0	0	0.000443	0	0
INF2	64423	broad.mit.edu	37	14	105174326	105174326	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:105174326C>T	uc001ypb.2	+	8	1865	c.1722C>T	c.(1720-1722)TCC>TCT	p.S574S	INF2_uc010tyi.1_Silent_p.S574S|INF2_uc001ypc.2_Silent_p.S574S|INF2_uc010awz.1_RNA	NM_022489	NP_071934	Q27J81	INF2_HUMAN	inverted formin 2 isoform 1	574	FH2.				actin cytoskeleton organization	endoplasmic reticulum|nucleus|perinuclear region of cytoplasm	actin binding|Rho GTPase binding				0		all_cancers(154;0.0896)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00188)|OV - Ovarian serous cystadenocarcinoma(23;0.0191)|Epithelial(46;0.047)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.176)		AGCTGCCATCCAACGTGGCAC	0.642													7	35					0	0	0.001984	0	0
AHNAK2	113146	broad.mit.edu	37	14	105420656	105420656	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:105420656C>T	uc010axc.1	-	7	1252	c.1132G>A	c.(1132-1134)GAG>AAG	p.E378K	AHNAK2_uc001ypx.2_Missense_Mutation_p.E278K	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	378						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GCCCTCTCCTCTCTCCTGCTG	0.632													15	58					0	0	0.004007	0	0
ADAM6	8755	broad.mit.edu	37	14	106235850	106235850	+	RNA	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:106235850C>T	uc010tyt.1	-	3617		c.57997G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						TGGTCATCTCCTCCCGGGATG	0.637													34	175					0	0	0.002222	0	0
ADAM6	8755	broad.mit.edu	37	14	106725627	106725627	+	RNA	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:106725627G>A	uc010tyt.1	-	587		c.18021C>T								Parts of antibodies, mostly variable regions.												0						ATAGCCACAAGAAAAAGCCAG	0.438													10	129					0	0	0.001855	0	0
Unknown	0	broad.mit.edu	37	15	22440650	22440650	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr15:22440650G>A	uc001yug.2	-	1	216	c.197C>T	c.(196-198)TCC>TTC	p.S66F						full-length cDNA clone CS0DI014YE21 of Placenta Cot 25-normalized of Homo sapiens (human).																		TGAGCCCCAGGAGAAATTCCT	0.517													5	27					0	0	0.000602	0	0
C15orf2	23742	broad.mit.edu	37	15	24923560	24923560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr15:24923560G>A	uc001ywo.2	+	1	3020	c.2546G>A	c.(2545-2547)CGA>CAA	p.R849Q		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	849					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GAGTACATCCGATTTTATATG	0.502													12	48					0	0	0.000978	0	0
GABRB3	2562	broad.mit.edu	37	15	26825552	26825552	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr15:26825552G>A	uc001zaz.2	-	6	738	c.596C>T	c.(595-597)GCT>GTT	p.A199V	GABRB3_uc010uae.1_Missense_Mutation_p.A114V|GABRB3_uc001zba.2_Missense_Mutation_p.A199V|GABRB3_uc001zbb.2_Missense_Mutation_p.A255V	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	199	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	TCCGGTAACAGCCTTGTCCCC	0.532													35	49					0	0	0.003755	0	0
GABRG3	2567	broad.mit.edu	37	15	27574022	27574022	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr15:27574022G>A	uc001zbg.1	+	5	727	c.561G>A	c.(559-561)CTG>CTA	p.L187L	GABRG3_uc001zbf.2_Silent_p.L187L	NM_033223	NP_150092	Q99928	GBRG3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, gamma	187	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity				0		all_lung(180;4.58e-12)|Breast(32;0.000625)|Colorectal(260;0.235)		all cancers(64;3.15e-07)|Epithelial(43;1.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0261)		CCTGCCCGCTGATTTTCTCCA	0.542													11	15					0	0	0.001368	0	0
TMCO5A	145942	broad.mit.edu	37	15	38243360	38243360	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr15:38243360G>A	uc001zjw.2	+	11	895	c.792G>A	c.(790-792)AGG>AGA	p.R264R	TMCO5A_uc001zjv.1_Intron	NM_152453	NP_689666	Q8N6Q1	TMC5A_HUMAN	transmembrane and coiled-coil domains 5A	264						integral to membrane				central_nervous_system(1)	1						TACTGGGCAGGAGCACCTTGT	0.438													34	30					0	0	0.002836	0	0
SPTBN5	51332	broad.mit.edu	37	15	42143348	42143348	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr15:42143348T>A	uc001zos.2	-	65	10972	c.10639A>T	c.(10639-10641)AAA>TAA	p.K3547*		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	3582	PH.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		GAAGCTACTTTCTGAGGAGAG	0.622													10	11					0	0	0.000673	0	0
STRC	161497	broad.mit.edu	37	15	43893146	43893146	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr15:43893146G>A	uc001zsf.2	-	25	4846	c.4768C>T	c.(4768-4770)CAT>TAT	p.H1590Y	STRC_uc010bdl.2_Missense_Mutation_p.H817Y|STRC_uc001zse.2_Missense_Mutation_p.H108Y	NM_153700	NP_714544	Q7RTU9	STRC_HUMAN	stereocilin precursor	1590					sensory perception of sound	cell surface					0		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		GCTGTCAGATGAACGAAGTCC	0.592													25	42					0	0	0.004878	0	0
CGNL1	84952	broad.mit.edu	37	15	57730313	57730313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr15:57730313C>T	uc002aeg.2	+	2	192	c.116C>T	c.(115-117)TCC>TTC	p.S39F	CGNL1_uc010bfw.2_Missense_Mutation_p.S39F	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	39	Head.|ZIM (By similarity).					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		AAGGCAGGCTCCTACGGTGTC	0.478													54	78					0	0	0.003610	0	0
HERC1	8925	broad.mit.edu	37	15	64067493	64067493	+	Silent	SNP	G	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr15:64067493G>C	uc002amp.2	-	2	478	c.330C>G	c.(328-330)CTC>CTG	p.L110L	HERC1_uc010uil.1_Silent_p.L110L|HERC1_uc010bgt.1_Silent_p.L110L|HERC1_uc002amq.1_Silent_p.L110L	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	110					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						AGACACGCTGGAGTACAAGCA	0.473													40	51					0	0	0.001287	0	0
PARP16	54956	broad.mit.edu	37	15	65558942	65558942	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr15:65558942G>A	uc002aoo.2	-	3	731	c.477C>T	c.(475-477)TTC>TTT	p.F159F	PARP16_uc002aop.2_Intron|PARP16_uc002aoq.2_Silent_p.F159F	NM_017851	NP_060321	Q8N5Y8	PAR16_HUMAN	poly (ADP-ribose) polymerase family, member 16	159	PARP catalytic.					integral to membrane	NAD+ ADP-ribosyltransferase activity			lung(2)	2						TAATGGAATGGAAGTTTTCTA	0.493													21	49					0	0	0.003954	0	0
MEGF11	84465	broad.mit.edu	37	15	66215178	66215179	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr15:66215178_66215179CC>GT	uc002apm.2	-	14	1945_1946	c.1804_1805GG>AC	c.(1804-1806)GGA>ACA	p.G602T	MEGF11_uc002apl.2_Missense_Mutation_p.G527T|MEGF11_uc002apn.1_Missense_Mutation_p.G602T	NM_032445	NP_115821	A6BM72	MEG11_HUMAN	multiple EGF-like-domains 11 precursor	602	EGF-like 10.					basolateral plasma membrane|integral to membrane				pancreas(1)	1						GCATAAGGGTCCTCGGAAGCCA	0.614													11	43					0	0	0.004672	0	0
FSD2	123722	broad.mit.edu	37	15	83447578	83447578	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr15:83447578C>T	uc002bjd.2	-	6	1218	c.1051G>A	c.(1051-1053)GAC>AAC	p.D351N	FSD2_uc010uol.1_Missense_Mutation_p.D351N|FSD2_uc010uom.1_Missense_Mutation_p.D351N	NM_001007122	NP_001007123	A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing	351										central_nervous_system(1)	1						AAGGTCTGGTCTTCAAACTCA	0.478													27	18					0	0	0.001061	0	0
AKAP13	11214	broad.mit.edu	37	15	86198668	86198668	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr15:86198668C>T	uc002blv.1	+	11	4565	c.4395C>T	c.(4393-4395)GCC>GCT	p.A1465A	AKAP13_uc002blt.1_Silent_p.A1465A|AKAP13_uc002blu.1_Silent_p.A1465A|AKAP13_uc010bnf.1_Silent_p.A105A|AKAP13_uc002blw.1_5'UTR|AKAP13_uc010bne.1_Silent_p.A118A	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	1465					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						AGCATTTGGCCTGTGATATCA	0.483													19	20					0	0	0.001216	0	0
NTRK3	4916	broad.mit.edu	37	15	88476383	88476383	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr15:88476383C>T	uc002bme.1	-	15	1911	c.1749G>A	c.(1747-1749)AAG>AAA	p.K583K	NTRK3_uc002bmh.2_Silent_p.K575K|NTRK3_uc002bmf.1_Silent_p.K583K|NTRK3_uc010upl.1_Silent_p.K485K|NTRK3_uc010bnh.1_Silent_p.K575K	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	583	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			TCTGGAAATCCTTCCGGGCAG	0.567			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			25	31					0	0	0.001061	0	0
SEPX1	51734	broad.mit.edu	37	16	1990821	1990821	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:1990821G>C	uc010uvs.1	-	3	414	c.277C>G	c.(277-279)CGA>GGA	p.R93G		NM_016332	NP_057416	Q9NZV6	MSRB1_HUMAN	selenoprotein X, 1	93					protein repair	cytoplasm|nucleus	peptide-methionine-(S)-S-oxide reductase activity|zinc ion binding			ovary(1)	1					L-Methionine(DB00134)	ATTCAGAATCGGGACTGCCCC	0.592													3	52					0	0	0.000248	0	0
TBL3	10607	broad.mit.edu	37	16	2025406	2025407	+	Missense_Mutation	DNP	CC	TT	TT	rs141126567		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:2025406_2025407CC>TT	uc002cnu.1	+	9	874_875	c.772_773CC>TT	c.(772-774)CCA>TTA	p.P258L	TBL3_uc002cnv.1_Missense_Mutation_p.P144L|TBL3_uc010bsb.1_Missense_Mutation_p.P47L|TBL3_uc010bsc.1_Missense_Mutation_p.P144L|TBL3_uc010uvt.1_5'UTR|TBL3_uc002cnw.1_5'Flank	NM_006453	NP_006444	Q12788	TBL3_HUMAN	transducin beta-like 3	258	WD 5.				G-protein signaling, coupled to cGMP nucleotide second messenger|rRNA processing	nucleolus|small-subunit processome	receptor signaling protein activity				0						TGTGAAGTCCCCAGGGCTGTAC	0.629													20	77					0	0	0.004672	0	0
PKD1	5310	broad.mit.edu	37	16	2159956	2159956	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:2159956G>A	uc002cos.1	-	15	5421	c.5212C>T	c.(5212-5214)CTC>TTC	p.L1738F	PKD1_uc002cot.1_Missense_Mutation_p.L1738F	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	1738	PKD 13.|Extracellular (Potential).				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						TCGGCACTGAGGGTGACGCTT	0.637													4	17					0	0	0.000248	0	0
GLYR1	84656	broad.mit.edu	37	16	4873863	4873863	+	Missense_Mutation	SNP	C	T	T	rs142231403		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:4873863C>T	uc002cxx.3	-	6	620	c.583G>A	c.(583-585)GGA>AGA	p.G195R	GLYR1_uc002cxy.2_RNA|GLYR1_uc002cxz.1_Missense_Mutation_p.G126R|GLYR1_uc002cya.2_Missense_Mutation_p.G195R|GLYR1_uc010uxv.1_Missense_Mutation_p.G114R	NM_032569	NP_115958	Q49A26	GLYR1_HUMAN	cytokine-like nuclear factor n-pac	195					pentose-phosphate shunt	nucleus	coenzyme binding|DNA binding|methylated histone residue binding|phosphogluconate dehydrogenase (decarboxylating) activity				0						GCCATCGGTCCGGCCATCATC	0.552													32	155					0	0	0.002836	0	0
FAM86A	196483	broad.mit.edu	37	16	5140543	5140543	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:5140543G>A	uc002cyo.2	-	5	415	c.366C>T	c.(364-366)CTC>CTT	p.L122L	FAM86A_uc002cyp.2_Silent_p.L88L	NM_201400	NP_958802	Q96G04	FA86A_HUMAN	hypothetical protein LOC196483 isoform 1	122											0						TGCTCTCGGAGAGTGTGACCG	0.602													15	61					0	0	0.004007	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857522	9857522	+	Silent	SNP	A	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:9857522A>G	uc002czo.3	-	13	4427	c.3879T>C	c.(3877-3879)GAT>GAC	p.D1293D	GRIN2A_uc010uym.1_Silent_p.D1293D|GRIN2A_uc010uyn.1_Intron|GRIN2A_uc002czr.3_Intron	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1293	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CGACAATGTTATCGTAGGAAT	0.522													16	86					0	0	0.004990	0	0
GRIN2A	2903	broad.mit.edu	37	16	9923328	9923328	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:9923328C>T	uc002czo.3	-	9	2507	c.1959G>A	c.(1957-1959)ATG>ATA	p.M653I	GRIN2A_uc010uym.1_Missense_Mutation_p.M653I|GRIN2A_uc010uyn.1_Missense_Mutation_p.M496I|GRIN2A_uc002czr.3_Missense_Mutation_p.M653I	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	653	Helical; (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding	p.M653I(1)		skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCTCTTGGATCATGAAGGCAG	0.493													5	47					0	0	0.001168	0	0
RUNDC2A	84127	broad.mit.edu	37	16	12142328	12142328	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:12142328C>T	uc002dbw.1	+	7	661	c.599C>T	c.(598-600)ACG>ATG	p.T200M		NM_032167	NP_115543	Q9HA26	RUN2A_HUMAN	RUN domain containing 2A	200										ovary(1)	1						AAGGAGTCAACGCAGAACGTG	0.512			T	CIITA	PMBL|Hodgkin Lymphona|								19	79					0	0	0.001216	0	0
Unknown	0	broad.mit.edu	37	16	15457701	15457701	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:15457701G>A	uc010bvf.1	-	9	812	c.812C>T	c.(811-813)GCT>GTT	p.A271V						RecName: Full=NPIP-like protein 1;																		AGGGGAGTGAGCAGACACTCG	0.562													4	101					0	0	0.001168	0	0
XYLT1	64131	broad.mit.edu	37	16	17294482	17294482	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:17294482C>T	uc002dfa.2	-	4	1028	c.943G>A	c.(943-945)GAG>AAG	p.E315K		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	315	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						ACGGAGTCCTCGTCCCACTGC	0.572													30	115					0	0	0.002445	0	0
TMC7	79905	broad.mit.edu	37	16	19047023	19047023	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:19047023C>T	uc002dfq.2	+	7	1013	c.883C>T	c.(883-885)CTG>TTG	p.L295L	TMC7_uc010vao.1_Silent_p.L295L|TMC7_uc002dfp.2_Silent_p.L295L|TMC7_uc010vap.1_Silent_p.L185L	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	295	Cytoplasmic (Potential).					integral to membrane				skin(2)|ovary(1)	3						CAAAATCAACCTGATTCGGAG	0.473													14	61					0	0	0.003163	0	0
GPR139	124274	broad.mit.edu	37	16	20043470	20043470	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:20043470G>A	uc002dgu.1	-	2	811	c.649C>T	c.(649-651)CGT>TGT	p.R217C	GPR139_uc010vaw.1_Missense_Mutation_p.R124C	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	217	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(2)	2						CCACGGAGACGAAAATTGCTC	0.507													13	66					0	0	0.001855	0	0
DNAH3	55567	broad.mit.edu	37	16	21051177	21051177	+	Missense_Mutation	SNP	C	T	T	rs12927146		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:21051177C>T	uc010vbe.1	-	33	4727	c.4727G>A	c.(4726-4728)AGA>AAA	p.R1576K		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1576	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AACACACCTTCTGGAGTCCAG	0.483													23	96					0	0	0.005443	0	0
NPIPL3	23117	broad.mit.edu	37	16	21416240	21416240	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:21416240G>A	uc002dix.1	-	9	1199	c.1017C>T	c.(1015-1017)CTC>CTT	p.L339L	uc002diq.3_Intron|NPIPL3_uc010bws.2_Silent_p.L339L|uc010bwt.1_RNA|NPIPL3_uc010vbg.1_Silent_p.L320L|LOC100271836_uc002diu.1_RNA|NPIPL3_uc010bwu.1_Silent_p.L156L	NM_130464	NP_569731	Q92617	NPPL3_HUMAN	nuclear pore complex interacting protein-like 3	339						integral to membrane					0						GAGGTGTCTTGAGATTATCAT	0.443													9	95					0	0	0.004482	0	0
SCNN1G	6340	broad.mit.edu	37	16	23226577	23226577	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:23226577C>T	uc002dlm.1	+	13	1876	c.1737C>T	c.(1735-1737)CCC>CCT	p.P579P		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	579	Cytoplasmic (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	AACAGGCTCCCCCATGTCCAG	0.557													19	80					0	0	0.000958	0	0
GGA2	23062	broad.mit.edu	37	16	23497377	23497377	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:23497377G>A	uc002dlq.2	-	8	833	c.757C>T	c.(757-759)CGC>TGC	p.R253C	GGA2_uc010bxo.1_RNA	NM_015044	NP_055859	Q9UJY4	GGA2_HUMAN	ADP-ribosylation factor binding protein 2	253	GAT.				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|clathrin-coated vesicle|endosome membrane|trans-Golgi network	ADP-ribosylation factor binding			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(48;0.0386)		CCTGGCCTGCGGTACATGCTC	0.488													23	79					0	0	0.004656	0	0
PRKCB	5579	broad.mit.edu	37	16	24196802	24196802	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:24196802G>A	uc002dmd.2	+	15	1833	c.1636G>A	c.(1636-1638)GAA>AAA	p.E546K	PRKCB_uc002dme.2_Missense_Mutation_p.E546K	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	546	Protein kinase.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	AGGGGAGGATGAAGATGAACT	0.537													17	63					0	0	0.004990	0	0
XPO6	23214	broad.mit.edu	37	16	28117523	28117523	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:28117523G>A	uc002dpa.1	-	20	3126	c.2625C>T	c.(2623-2625)GCC>GCT	p.A875A	XPO6_uc002dpb.1_Silent_p.A861A|XPO6_uc010vcp.1_Silent_p.A875A	NM_015171	NP_055986	Q96QU8	XPO6_HUMAN	exportin 6	875					protein export from nucleus		protein binding|protein transporter activity			ovary(1)|skin(1)	2						GGATGCTCTCGGCTAACTGCT	0.577													6	28					0	0	0.003080	0	0
SULT1A1	6817	broad.mit.edu	37	16	28617511	28617511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:28617511G>A	uc002dqi.2	-	6	1114	c.641C>T	c.(640-642)TCC>TTC	p.S214F	uc010vct.1_Intron|SULT1A1_uc002dqj.2_Missense_Mutation_p.S214F|SULT1A1_uc002dqk.2_Missense_Mutation_p.S214F|SULT1A1_uc002dql.2_Missense_Mutation_p.S214F|SULT1A1_uc002dqm.2_Missense_Mutation_p.S136F|SULT1A1_uc002dqn.2_Missense_Mutation_p.S305F|SULT1A1_uc002dqo.2_Missense_Mutation_p.S214F|SULT1A1_uc002dqp.2_Missense_Mutation_p.S214F	NM_177534	NP_803878	P50225	ST1A1_HUMAN	sulfotransferase family, cytosolic, 1A,	214	PAPS.				3'-phosphoadenosine 5'-phosphosulfate metabolic process|catecholamine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						CTCTGGCAGGGAGCGCCCCAC	0.547													8	63					0	0	0.004482	0	0
SRCAP	10847	broad.mit.edu	37	16	30740881	30740881	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:30740881C>T	uc002dze.1	+	27	6500	c.6115C>T	c.(6115-6117)CAG>TAG	p.Q2039*	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Nonsense_Mutation_p.Q1834*	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2039					interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			AAGACTCATCCAGTATGATTG	0.383													15	120					0	0	0.003163	0	0
SETD1A	9739	broad.mit.edu	37	16	30977304	30977304	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:30977304C>T	uc002ead.1	+	8	2788	c.2102C>T	c.(2101-2103)GCC>GTC	p.A701V		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	701					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						GGATTGATTGCCGCCTCAGCT	0.637													14	81					0	0	0.004007	0	0
FUS	2521	broad.mit.edu	37	16	31195273	31195273	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:31195273C>T	uc002ebf.2	+	4	368	c.285C>T	c.(283-285)TCC>TCT	p.S95S	FUS_uc002ebe.1_Silent_p.S95S|FUS_uc002ebh.2_Silent_p.S94S|FUS_uc002ebg.2_5'UTR|FUS_uc002ebi.2_Silent_p.S95S|FUS_uc002ebj.2_5'UTR|FUS_uc002ebk.1_5'Flank	NM_004960	NP_004951	P35637	FUS_HUMAN	fusion (involved in t(12;16) in malignant	95	Gln/Gly/Ser/Tyr-rich.				cell death|nuclear mRNA splicing, via spliceosome	nucleoplasm	DNA binding|nucleotide binding|protein binding|RNA binding|zinc ion binding		FUS/DDIT3(623)|FUS/ERG(163)|FUS/CREB3L2(158)|FUS/CREB3L1(6)|FUS/ATF1(4)|FUS/FEV(2)	soft_tissue(791)|haematopoietic_and_lymphoid_tissue(153)|bone(12)|breast(2)	958		Renal(780;0.000219)|Breast(268;0.00957)|Hepatocellular(780;0.121)		GBM - Glioblastoma multiforme(240;2.31e-05)|Kidney(780;0.000209)		GGCAGCAGTCCTCCTACCCTG	0.582			T	DDIT3|ERG|FEV|ATF1|CREB3L2|CREB3L1	liposarcoma|AML|Ewing sarcoma|angiomatoid fibrous histiocytoma|fibromyxoid sarcoma								24	135					0	0	0.002299	0	0
ITGAM	3684	broad.mit.edu	37	16	31338198	31338198	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:31338198G>C	uc002ebq.2	+	22	2748	c.2650G>C	c.(2650-2652)GAT>CAT	p.D884H	ITGAM_uc002ebr.2_Missense_Mutation_p.D885H|ITGAM_uc010can.2_Missense_Mutation_p.D290H|ITGAM_uc002ebs.1_Missense_Mutation_p.D290H	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	884	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						TATCACGTTTGATGTAGACTC	0.363													3	212					0	0	0.004672	0	0
ITGAX	3687	broad.mit.edu	37	16	31374614	31374614	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:31374614C>T	uc002ebu.1	+	14	1696	c.1629C>T	c.(1627-1629)GCC>GCT	p.A543A	ITGAX_uc002ebt.2_Silent_p.A543A|ITGAX_uc010vfk.1_Silent_p.A193A	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	543	Extracellular (Potential).|FG-GAP 6.				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TCATCGGGGCCCCAGGAGAGG	0.642													46	131					0	0	0.003610	0	0
ABCC12	94160	broad.mit.edu	37	16	48121875	48121875	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:48121875C>T	uc002efc.1	-	25	3943	c.3597G>A	c.(3595-3597)GTG>GTA	p.V1199V	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	1199	ABC transporter 2.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				CCTGTGGGATCACAGTCAGCT	0.438													9	22					0	0	0.000443	0	0
NUP93	9688	broad.mit.edu	37	16	56868113	56868113	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:56868113G>A	uc002eka.2	+	14	1732	c.1611G>A	c.(1609-1611)CGG>CGA	p.R537R	NUP93_uc002ekb.2_Silent_p.R414R|NUP93_uc010vhi.1_Silent_p.R414R	NM_014669	NP_055484	Q8N1F7	NUP93_HUMAN	nucleoporin 93kDa	537					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(1)|lung(1)	2						TGTACACCCGGAAGTTTGAGT	0.532													41	101					0	0	0.003214	0	0
KATNB1	10300	broad.mit.edu	37	16	57789407	57789407	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:57789407G>A	uc002eml.1	+	16	1940	c.1566_splice	c.e16+1	p.K522_splice		NM_005886	NP_005877	Q9BVA0	KTNB1_HUMAN	katanin p80 subunit B 1						cell division|mitosis|negative regulation of microtubule depolymerization|positive regulation of microtubule depolymerization|protein targeting	katanin complex|microtubule|spindle pole	microtubule binding|protein heterodimerization activity				0		all_neural(199;0.223)				CGACATCAAGGCAAGTGCCCA	0.647													14	70					0	0	0.001855	0	0
RANBP10	57610	broad.mit.edu	37	16	67763670	67763671	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:67763670_67763671GG>AA	uc002eud.2	-	9	1175_1176	c.1059_1060CC>TT	c.(1057-1062)TCCCGA>TCTTGA	p.R354*	RANBP10_uc010ceo.2_Nonsense_Mutation_p.R125*|RANBP10_uc010vju.1_Nonsense_Mutation_p.R298*|RANBP10_uc010vjv.1_Nonsense_Mutation_p.R237*|RANBP10_uc010vjw.1_Nonsense_Mutation_p.R15*	NM_020850	NP_065901	Q6VN20	RBP10_HUMAN	RAN binding protein 10	354	Ser-rich.									ovary(1)	1		Acute lymphoblastic leukemia(13;4.34e-06)|all_hematologic(13;0.000643)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00522)|Epithelial(162;0.025)|all cancers(182;0.157)		TTGGGGCTTCGGGAGCTCAAAC	0.604													20	95					0	0	0.004672	0	0
PDPR	55066	broad.mit.edu	37	16	70176284	70176285	+	Missense_Mutation	DNP	CC	TT	TT	rs143406287	by1000genomes	TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:70176284_70176285CC>TT	uc002eyf.1	+	12	2420_2421	c.1463_1464CC>TT	c.(1462-1464)CCC>CTT	p.P488L	CLEC18C_uc002exy.2_Intron|PDPR_uc010vlr.1_Missense_Mutation_p.P388L|PDPR_uc002eyg.1_Missense_Mutation_p.P216L	NM_017990	NP_060460	Q8NCN5	PDPR_HUMAN	pyruvate dehydrogenase phosphatase regulatory	488					glycine catabolic process|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	aminomethyltransferase activity|oxidoreductase activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.124)		TTTGTTCCCCCCGACAAGGGTA	0.431													5	70					0	0	0.004672	0	0
HYDIN	54768	broad.mit.edu	37	16	70863536	70863536	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:70863536C>T	uc002ezr.2	-	81	14222	c.14094G>A	c.(14092-14094)GAG>GAA	p.E4698E	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4699										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GCTTGCGGTTCTCCAAGTTCA	0.557													5	35					0	0	0.001168	0	0
LOC283922	283922	broad.mit.edu	37	16	74372645	74372645	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:74372645G>A	uc002fcr.2	-	9	1660	c.314C>T	c.(313-315)CCT>CTT	p.P105L	LOC283922_uc010vms.1_RNA					Homo sapiens cDNA FLJ39449 fis, clone PROST2008360, highly similar to Homo sapiens pyruvate dehydrogenase phosphatase regulatory subunit (PDPR), mRNA.												0						ACCCTTGTCAGGGGGAACAAA	0.443													4	33					0	0	0.001168	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76532463	76532463	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:76532463G>A	uc002feu.1	+	17	2623	c.2238_splice	c.e17-1	p.W746_splice	CNTNAP4_uc002fev.1_Splice_Site_p.W610_splice|CNTNAP4_uc010chb.1_Splice_Site_p.W673_splice|CNTNAP4_uc002fex.1_Splice_Site_p.W749_splice	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1						cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						TTGTTTTTTAGGACCAATGAC	0.348													5	48					0	0	0.003080	0	0
CDH15	1013	broad.mit.edu	37	16	89256729	89256729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:89256729C>T	uc002fmt.2	+	8	1134	c.1057C>T	c.(1057-1059)CTT>TTT	p.L353F		NM_004933	NP_004924	P55291	CAD15_HUMAN	cadherin 15 preproprotein	353	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	calcium ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0261)		GGCGGCTGCCCTTAGGGCTGA	0.632													10	18					0	0	0.000978	0	0
FANCA	2175	broad.mit.edu	37	16	89831401	89831401	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:89831401G>A	uc002fou.1	-	28	2717	c.2675C>T	c.(2674-2676)TCC>TTC	p.S892F	FANCA_uc010vpn.1_Missense_Mutation_p.S892F|FANCA_uc010vpo.1_Missense_Mutation_p.S21F	NM_000135	NP_000126	O15360	FANCA_HUMAN	Fanconi anemia, complementation group A isoform	892					DNA repair|protein complex assembly	cytoplasm|nucleoplasm	protein binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6		Lung NSC(15;8.48e-06)|all_lung(18;1.31e-05)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.028)		GGGTCTCCAGGAAAGGCTGGC	0.532			D|Mis|N|F|S			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				12	88					0	0	0.001368	0	0
FAM101B	359845	broad.mit.edu	37	17	292987	292987	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:292987G>A	uc002frj.2	-	2	677	c.403C>T	c.(403-405)CCG>TCG	p.P135S		NM_182705	NP_874364	Q8N5W9	F101B_HUMAN	hypothetical protein LOC359845	205											0		Myeloproliferative disorder(207;0.204)		UCEC - Uterine corpus endometrioid carcinoma (25;0.0216)		TCGCTGCCCGGGAGCTCCGCG	0.657													11	17					0	0	0.001368	0	0
MYBBP1A	10514	broad.mit.edu	37	17	4444801	4444801	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:4444801G>A	uc002fyb.3	-	24	3316	c.3254C>T	c.(3253-3255)TCC>TTC	p.S1085F	MYBBP1A_uc002fxz.3_Missense_Mutation_p.S1085F|MYBBP1A_uc002fya.3_Missense_Mutation_p.S30F|MYBBP1A_uc010vsa.1_Missense_Mutation_p.S127F	NM_014520	NP_055335	Q9BQG0	MBB1A_HUMAN	MYB binding protein 1a isoform 2	1085					nucleocytoplasmic transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NLS-dependent protein nuclear import complex|nucleolus	DNA binding|DNA-directed DNA polymerase activity|transcription factor binding			ovary(1)|skin(1)	2						CAGCTCCAGGGAGGACAGTGC	0.657													12	105					0	0	0.001855	0	0
ZMYND15	84225	broad.mit.edu	37	17	4648217	4648217	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:4648217G>A	uc002fyt.2	+	11	1812	c.1773G>A	c.(1771-1773)CGG>CGA	p.R591R	ZMYND15_uc002fyv.2_Silent_p.R630R|ZMYND15_uc002fyu.2_Silent_p.R638R	NM_032265	NP_115641	Q9H091	ZMY15_HUMAN	zinc finger, MYND-type containing 15 isoform 2	591							zinc ion binding				0						CTCTGCCCCGGTTACAGGTGG	0.582													20	121					0	0	0.002299	0	0
NLRP1	22861	broad.mit.edu	37	17	5461997	5461997	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:5461997G>A	uc002gci.2	-	4	2574	c.2019C>T	c.(2017-2019)TTC>TTT	p.F673F	NLRP1_uc002gcg.1_Silent_p.F673F|NLRP1_uc002gck.2_Silent_p.F673F|NLRP1_uc002gcj.2_Silent_p.F673F|NLRP1_uc002gcl.2_Silent_p.F673F|NLRP1_uc002gch.3_Silent_p.F673F|NLRP1_uc010clh.2_Silent_p.F673F	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	673					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				GGCCCAATAGGAAACGTGTGG	0.498													19	90					0	0	0.001216	0	0
ALOX15B	247	broad.mit.edu	37	17	7951740	7951740	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:7951740G>A	uc002gju.2	+	14	2004	c.1888G>A	c.(1888-1890)GAG>AAG	p.E630K	ALOX15B_uc002gjv.2_Missense_Mutation_p.E601K|ALOX15B_uc002gjw.2_Missense_Mutation_p.E556K|ALOX15B_uc010vun.1_Missense_Mutation_p.E618K|ALOX15B_uc010cnp.2_Missense_Mutation_p.E436K	NM_001141	NP_001132	O15296	LX15B_HUMAN	arachidonate 15-lipoxygenase, second type	630	Lipoxygenase.				induction of apoptosis|leukotriene biosynthetic process|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of growth|prostate gland development|regulation of epithelial cell differentiation	cytoplasm	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			ovary(1)	1						GCACTTCACAGAGGAGGCCCC	0.662													17	40					0	0	0.004007	0	0
PFAS	5198	broad.mit.edu	37	17	8170169	8170169	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:8170169C>T	uc002gkr.2	+	23	3061	c.2920C>T	c.(2920-2922)CAT>TAT	p.H974Y	PFAS_uc010vuv.1_Missense_Mutation_p.H550Y|PFAS_uc002gks.2_Missense_Mutation_p.H53Y	NM_012393	NP_036525	O15067	PUR4_HUMAN	phosphoribosylformylglycinamidine synthase	974					'de novo' IMP biosynthetic process|glutamine metabolic process|purine base metabolic process	cytosol	ATP binding|phosphoribosylformylglycinamidine synthase activity|protein binding			ovary(2)|central_nervous_system(2)|pancreas(1)	5					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	TGCTGGCCTCCATTGCCTGGA	0.667													5	23					0	0	0.001984	0	0
PIK3R5	23533	broad.mit.edu	37	17	8789918	8789918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:8789918G>A	uc002glt.2	-	13	1977	c.1910C>T	c.(1909-1911)TCC>TTC	p.S637F	PIK3R5_uc010vuz.1_Missense_Mutation_p.S637F|PIK3R5_uc002glu.3_Missense_Mutation_p.S251F	NM_014308	NP_055123	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	637					platelet activation	cytosol|membrane|nucleus				breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						AGCCTTCAGGGACTGCTGTGG	0.592													17	93					0	0	0.001216	0	0
MYH8	4626	broad.mit.edu	37	17	10303905	10303905	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:10303905C>T	uc002gmm.2	-	27	3632	c.3537G>A	c.(3535-3537)AGG>AGA	p.R1179R	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1179	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						CCTCCAGGTCCCTGCGCAGTT	0.567									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				18	89					0	0	0.000958	0	0
MYH4	4622	broad.mit.edu	37	17	10353807	10353807	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:10353807C>T	uc002gmn.2	-	30	4255	c.4144G>A	c.(4144-4146)GAC>AAC	p.D1382N	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1382	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TGGATGGCGTCCGTCTCGTAC	0.537													18	129					0	0	0.001216	0	0
MYH1	4619	broad.mit.edu	37	17	10406151	10406151	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:10406151C>T	uc002gmo.2	-	24	3109	c.3015G>A	c.(3013-3015)GAG>GAA	p.E1005E	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1005	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GCTGGTGGGCCTCCTGGAGAG	0.488													14	127					0	0	0.003163	0	0
MYH2	4620	broad.mit.edu	37	17	10442879	10442879	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:10442879A>G	uc010coi.2	-	13	1276	c.1148T>C	c.(1147-1149)GTT>GCT	p.V383A	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.V383A|MYH2_uc010coj.2_Missense_Mutation_p.V383A	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	383	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CTTGTCAGCAACTAAAAAGAA	0.413													10	67					0	0	0.000443	0	0
MYOCD	93649	broad.mit.edu	37	17	12666801	12666801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:12666801C>T	uc002gnn.2	+	13	2956	c.2657C>T	c.(2656-2658)CCC>CTC	p.P886L	MYOCD_uc002gno.2_Missense_Mutation_p.P934L|MYOCD_uc002gnq.2_Missense_Mutation_p.P610L	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	886					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		ACTGAATCTCCCTGGGAAACC	0.547													9	37					0	0	0.001368	0	0
NCOR1	9611	broad.mit.edu	37	17	15942761	15942761	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:15942761G>A	uc002gpo.2	-	44	7181	c.6941C>T	c.(6940-6942)CCA>CTA	p.P2314L	NCOR1_uc002gpn.2_Missense_Mutation_p.P2211L|NCOR1_uc002gpl.2_Missense_Mutation_p.P329L|NCOR1_uc002gpm.2_Missense_Mutation_p.P834L|NCOR1_uc010vwb.1_Missense_Mutation_p.P898L|NCOR1_uc010coy.2_Missense_Mutation_p.P1222L	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	2314	Interaction with C1D (By similarity).				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		ATGAGGTGATGGGTCCCCTTC	0.468													6	31					0	0	0.001984	0	0
RAI1	10743	broad.mit.edu	37	17	17697372	17697372	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:17697372T>A	uc002grm.2	+	3	1579	c.1110T>A	c.(1108-1110)TTT>TTA	p.F370L	RAI1_uc002grn.1_Missense_Mutation_p.F370L	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	370						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		TGGAGAACTTTCCCTACAGCC	0.652													18	89					0	0	0.001216	0	0
B9D1	27077	broad.mit.edu	37	17	19263689	19263689	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:19263689C>T	uc002gvk.3	-	2	240	c.76G>A	c.(76-78)GAT>AAT	p.D26N	B9D1_uc010cqm.1_Missense_Mutation_p.M1I|B9D1_uc002gvl.3_Missense_Mutation_p.M1I|B9D1_uc010vyr.1_Missense_Mutation_p.M45I|B9D1_uc010vys.1_Missense_Mutation_p.M76I|B9D1_uc010cqn.1_Missense_Mutation_p.M76I	NM_015681	NP_056496	Q9UPM9	B9D1_HUMAN	B9 protein	26	B9.				cilium assembly	centrosome|microtubule basal body	protein binding				0	all_cancers(12;2.04e-05)|all_epithelial(12;0.000806)|Hepatocellular(7;0.00345)|Breast(13;0.143)					TAGAGGTCATCATACTCTGGA	0.517													27	107					0	0	0.001061	0	0
VTN	7448	broad.mit.edu	37	17	26694912	26694912	+	Missense_Mutation	SNP	C	T	T	rs112195186		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:26694912C>T	uc002hbc.2	-	7	1297	c.1148G>A	c.(1147-1149)CGA>CAA	p.R383Q	SARM1_uc010wah.1_Intron|SEBOX_uc010wai.1_5'Flank|SEBOX_uc010crk.1_5'UTR|SARM1_uc010waj.1_Intron	NM_000638	NP_000629	P04004	VTNC_HUMAN	vitronectin precursor	383	Heparin-binding.				cell adhesion mediated by integrin|immune response|negative regulation of endopeptidase activity|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein binding|positive regulation of receptor-mediated endocytosis|positive regulation of smooth muscle cell migration|positive regulation of vascular endothelial growth factor receptor signaling pathway|smooth muscle cell-matrix adhesion	alphav-beta3 integrin-vitronectin complex|extracellular space	heparin binding|integrin binding|scavenger receptor activity			ovary(1)|kidney(1)	2	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)	Urokinase(DB00013)	GCTGTGGCCTCGTTGTGAACG	0.612													4	13					0	0	0.000602	0	0
SLC46A1	113235	broad.mit.edu	37	17	26726681	26726681	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:26726681C>T	uc002hbf.1	-	6	1467	c.1371G>A	c.(1369-1371)CAG>CAA	p.Q457Q	SARM1_uc010crl.1_3'UTR|SARM1_uc002hbe.1_3'UTR|SLC46A1_uc002hbg.1_3'UTR	NM_080669	NP_542400	Q96NT5	PCFT_HUMAN	proton-coupled folate transporter	457					cellular iron ion homeostasis|folic acid metabolic process	apical plasma membrane|cytoplasm|integral to membrane	folic acid binding|folic acid transporter activity|heme transporter activity				0	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)	Folic Acid(DB00158)	ATCAGGGGCTCTGGGGAAACT	0.562													11	38					0	0	0.000978	0	0
CRYBA1	1411	broad.mit.edu	37	17	27576199	27576199	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:27576199C>A	uc002hdw.2	+	2	78	c.71C>A	c.(70-72)ACG>AAG	p.T24K		NM_005208	NP_005199	P05813	CRBA1_HUMAN	crystallin, beta A3	24	N-terminal arm.				visual perception	soluble fraction	structural constituent of eye lens				0			BRCA - Breast invasive adenocarcinoma(11;3.3e-05)|Colorectal(6;0.0178)|COAD - Colon adenocarcinoma(6;0.0551)			ACCAACCCTACGCCGGGGTCC	0.552													13	52					0.00316338	0.0059999	0.003163	1	0
TAOK1	57551	broad.mit.edu	37	17	27818848	27818848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:27818848C>T	uc002hdz.1	+	10	990	c.796C>T	c.(796-798)CCT>TCT	p.P266S	TAOK1_uc010wbe.1_Missense_Mutation_p.P266S|TAOK1_uc010wbf.1_Missense_Mutation_p.P266S|TAOK1_uc002heb.1_Missense_Mutation_p.P92S	NM_020791	NP_065842	Q7L7X3	TAOK1_HUMAN	TAO kinase 1	266	Protein kinase.				mitotic prometaphase	cytosol|intracellular membrane-bounded organelle	ATP binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)|skin(1)	4			Colorectal(6;0.198)			CCAGAAAATCCCTCAAGATCG	0.259													22	105					0	0	0.001271	0	0
NF1	4763	broad.mit.edu	37	17	29486063	29486063	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:29486063T>A	uc002hgg.2	+	3	573	c.240T>A	c.(238-240)TAT>TAA	p.Y80*	NF1_uc002hge.1_Nonsense_Mutation_p.Y80*|NF1_uc002hgf.1_Nonsense_Mutation_p.Y80*|NF1_uc002hgh.2_Nonsense_Mutation_p.Y80*|NF1_uc010csn.1_5'UTR	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	80			Y -> C.		actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.0?(5)|p.?(4)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		AAAATTTATATCTCTCTCAGT	0.328			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			10	32					0	0	0.000443	0	0
MYO1D	4642	broad.mit.edu	37	17	31107694	31107694	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:31107694G>A	uc002hho.1	-	2	216	c.204C>T	c.(202-204)GGC>GGT	p.G68G	MYO1D_uc002hhp.1_Silent_p.G68G|MYO1D_uc010wcb.1_Silent_p.G68G	NM_015194	NP_056009	O94832	MYO1D_HUMAN	myosin ID	68	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3			BRCA - Breast invasive adenocarcinoma(9;0.0362)			ACAGCTCACGGCCTTTATACT	0.443													11	53					0	0	0.000673	0	0
Unknown	0	broad.mit.edu	37	17	34234315	34234315	+	RNA	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:34234315C>T	uc010ctx.1	-	1		c.2639G>A								Homo sapiens cDNA FLJ43944 fis, clone TESTI4014392.																		TCTCCTGGGTCTGAGAAAATT	0.537													3	8					0	0	0.004672	0	0
PLXDC1	57125	broad.mit.edu	37	17	37262150	37262150	+	Silent	SNP	T	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:37262150T>G	uc002hrg.2	-	7	980	c.768A>C	c.(766-768)CTA>CTC	p.L256L	uc002hrf.1_Intron|PLXDC1_uc002hrh.2_RNA|PLXDC1_uc002hri.2_RNA|PLXDC1_uc002hrj.1_RNA|PLXDC1_uc002hrk.1_RNA	NM_020405	NP_065138	Q8IUK5	PXDC1_HUMAN	plexin domain containing 1 precursor	256	Extracellular (Potential).				angiogenesis	cytoplasm|extracellular region|integral to membrane|tight junction				ovary(1)|kidney(1)|skin(1)	3						AGGCATCCGATAGGCCGGTTT	0.587													5	109					0	0	0.001168	0	0
ERBB2	2064	broad.mit.edu	37	17	37884091	37884092	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:37884091_37884092GG>AA	uc002hso.2	+	27	3800_3801	c.3562_3563GG>AA	c.(3562-3564)GGG>AAG	p.G1188K	ERBB2_uc002hsm.2_Missense_Mutation_p.G1158K|ERBB2_uc010cwa.2_Missense_Mutation_p.G1173K|ERBB2_uc002hsp.2_Missense_Mutation_p.G991K|ERBB2_uc010cwb.2_3'UTR|ERBB2_uc010wek.1_Missense_Mutation_p.G912K	NM_004448	NP_004439	P04626	ERBB2_HUMAN	erbB-2 isoform a	1188	Cytoplasmic (Potential).				cell proliferation|heart development|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of cell adhesion|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|protein autophosphorylation|regulation of angiogenesis|regulation of microtubule-based process|regulation of transcription, DNA-dependent|transcription, DNA-dependent|wound healing	integral to membrane|nucleus|perinuclear region of cytoplasm|receptor complex	ATP binding|DNA binding|epidermal growth factor receptor activity|ErbB-3 class receptor binding|identical protein binding|protein C-terminus binding|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(73)|central_nervous_system(16)|ovary(16)|stomach(14)|breast(9)|upper_aerodigestive_tract(5)|large_intestine(3)|liver(3)|endometrium(2)|skin(1)|pancreas(1)	143	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)	Ovarian(249;0.0547)|Colorectal(1115;0.234)	UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;9.42e-64)|all cancers(3;5.61e-57)|BRCA - Breast invasive adenocarcinoma(8;2.5e-45)|STAD - Stomach adenocarcinoma(3;9.03e-13)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|OV - Ovarian serous cystadenocarcinoma(8;0.0917)|LUSC - Lung squamous cell carcinoma(15;0.171)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0767)	Lapatinib(DB01259)|Letrozole(DB01006)|Trastuzumab(DB00072)	TTTTGCCTTTGGGGGTGCCGTG	0.629		1	A|Mis|O		breast|ovarian|other tumour types|NSCLC|gastric					TCGA GBM(5;<1E-08)			11	55					0	0	0.004672	0	0
GSDMA	284110	broad.mit.edu	37	17	38122528	38122528	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:38122528G>A	uc002htl.1	+	3	348	c.230G>A	c.(229-231)GGG>GAG	p.G77E	GSDMA_uc002htm.1_Missense_Mutation_p.G77E	NM_178171	NP_835465	Q96QA5	GSDMA_HUMAN	gasdermin 1	77					apoptosis|induction of apoptosis	perinuclear region of cytoplasm					0						ACAGACACTGGGAATTTTGGC	0.398													15	44					0	0	0.004007	0	0
KRT26	353288	broad.mit.edu	37	17	38926572	38926572	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:38926572G>A	uc002hvf.2	-	3	660	c.614C>T	c.(613-615)ACC>ATC	p.T205I		NM_181539	NP_853517	Q7Z3Y9	K1C26_HUMAN	keratin 26	205	Rod.|Coil 1B.					intermediate filament	structural molecule activity				0		Breast(137;0.00526)				CTCCAGGTCGGTTGTACAAAG	0.483													13	102					0	0	0.001855	0	0
TUBG2	27175	broad.mit.edu	37	17	40818629	40818629	+	Silent	SNP	A	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:40818629A>G	uc010wgr.1	+	11	1423	c.1167A>G	c.(1165-1167)GAA>GAG	p.E389E	TUBG2_uc002iaq.2_3'UTR|TUBG2_uc002iar.2_Silent_p.E236E|TUBG2_uc002ias.2_Silent_p.E231E|TUBG2_uc002iap.2_Silent_p.E236E	NM_016437	NP_057521	Q9NRH3	TBG2_HUMAN	tubulin, gamma 2	389					G2/M transition of mitotic cell cycle|microtubule-based process|protein polymerization	cytosol	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.141)		AGCTCTTTGAAAGTTCCTGCC	0.498													14	36					0	0	0.004007	0	0
WNK4	65266	broad.mit.edu	37	17	40934877	40934877	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:40934877G>A	uc002ibj.2	+	2	741	c.720G>A	c.(718-720)TGG>TGA	p.W240*	WNK4_uc010wgx.1_5'UTR|WNK4_uc002ibk.1_5'Flank|WNK4_uc010wgy.1_5'Flank	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	240	Protein kinase.				intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		ATGATTCGTGGAAGTCGGTGC	0.602													4	33					0	0	0.000602	0	0
NBR1	4077	broad.mit.edu	37	17	41346489	41346489	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:41346489C>T	uc010czd.2	+	13	1787	c.1647C>T	c.(1645-1647)ATC>ATT	p.I549I	NBR1_uc010diz.2_Silent_p.I549I|NBR1_uc010whu.1_Silent_p.I549I|NBR1_uc010whv.1_Silent_p.I549I|NBR1_uc010whw.1_Silent_p.I528I|NBR1_uc010whx.1_Silent_p.I358I	NM_031862	NP_114068	Q14596	NBR1_HUMAN	neighbor of BRCA1 gene 1	549	ATG8 family protein-binding.				macroautophagy|protein oligomerization	autophagic vacuole|cytoplasmic vesicle|cytosol|late endosome|lysosome|sarcomere	ubiquitin binding|zinc ion binding			skin(1)	1		Breast(137;0.00086)		BRCA - Breast invasive adenocarcinoma(366;0.0934)		AGCTCTACATCCCATCTGTGG	0.522													47	118					0	0	0.003610	0	0
GPATCH8	23131	broad.mit.edu	37	17	42478429	42478429	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:42478429G>A	uc002igw.1	-	8	1080	c.1016C>T	c.(1015-1017)TCT>TTT	p.S339F	GPATCH8_uc002igv.1_Missense_Mutation_p.S261F|GPATCH8_uc010wiz.1_Missense_Mutation_p.S261F	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	339						intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		TCCTTGGTCAGAACTCTTCTC	0.478											OREG0024461	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	38	133					0	0	0.004289	0	0
Unknown	0	broad.mit.edu	37	17	45127331	45127331	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:45127331C>T	uc010wkj.1	+	2	883	c.529C>T	c.(529-531)CGC>TGC	p.R177C	uc010wkl.1_RNA					SubName: Full=Putative uncharacterized protein LRRC37A3;																		AACTCGCTCCCGCATGACCCA	0.418													45	742					0	0	0.003610	0	0
HOXB5	3215	broad.mit.edu	37	17	46669790	46669790	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:46669790G>A	uc002inr.2	-	2	650	c.591C>T	c.(589-591)GCC>GCT	p.A197A	HOXB3_uc010wlm.1_5'Flank|HOXB3_uc010dbf.2_5'Flank|HOXB3_uc010dbg.2_5'Flank	NM_002147	NP_002138	P09067	HXB5_HUMAN	homeobox B5	197	Homeobox.					nucleus	sequence-specific DNA binding				0						ACGCGGTCCGGGCCCTTTTCC	0.627													13	32					0	0	0.001855	0	0
TTLL6	284076	broad.mit.edu	37	17	46867348	46867348	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:46867348C>T	uc010wlo.1	-	11	1380	c.1345G>A	c.(1345-1347)GAG>AAG	p.E449K	TTLL6_uc002iob.2_Missense_Mutation_p.E142K|TTLL6_uc010dbi.2_RNA|TTLL6_uc002ioc.2_Missense_Mutation_p.E202K|TTLL6_uc002iod.2_Missense_Mutation_p.E296K	NM_001130918	NP_001124390	Q8N841	TTLL6_HUMAN	tubulin tyrosine ligase-like family, member 6	401	TTL.					cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity				0						CTCTCCTCCTCCAAGACTTTC	0.537													13	57					0	0	0.002450	0	0
NGFR	4804	broad.mit.edu	37	17	47587860	47587860	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:47587860C>T	uc002ioz.3	+	4	780	c.655C>T	c.(655-657)CCA>TCA	p.P219S		NM_002507	NP_002498	P08138	TNR16_HUMAN	nerve growth factor receptor precursor	219	Ser/Thr-rich.|Extracellular (Potential).				anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|membrane protein intracellular domain proteolysis|negative regulation of axonogenesis|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|positive regulation of axonogenesis	cell surface|cytosol|endosome|extracellular region|integral to plasma membrane|nucleoplasm				ovary(1)|lung(1)	2	all_cancers(4;1.45e-13)|Breast(4;6.34e-28)|all_epithelial(4;4.95e-17)					TGAGGCACCTCCAGAACAAGA	0.637													14	58					0	0	0.001855	0	0
CACNA1G	8913	broad.mit.edu	37	17	48695601	48695601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:48695601C>T	uc002irk.1	+	32	5696	c.5324C>T	c.(5323-5325)CCC>CTC	p.P1775L	CACNA1G_uc002irj.1_Missense_Mutation_p.P1741L|CACNA1G_uc002irl.1_Missense_Mutation_p.P1752L|CACNA1G_uc002irm.1_Missense_Mutation_p.P1741L|CACNA1G_uc002irn.1_Missense_Mutation_p.P1734L|CACNA1G_uc002iro.1_Missense_Mutation_p.P1741L|CACNA1G_uc002irp.1_Missense_Mutation_p.P1775L|CACNA1G_uc002irq.1_Missense_Mutation_p.P1752L|CACNA1G_uc002irr.1_Missense_Mutation_p.P1775L|CACNA1G_uc002irs.1_Missense_Mutation_p.P1764L|CACNA1G_uc002irt.1_Missense_Mutation_p.P1757L|CACNA1G_uc002irv.1_Missense_Mutation_p.P1764L|CACNA1G_uc002irw.1_Missense_Mutation_p.P1752L|CACNA1G_uc002iru.1_Missense_Mutation_p.P1741L|CACNA1G_uc002irx.1_Missense_Mutation_p.P1688L|CACNA1G_uc002iry.1_Missense_Mutation_p.P1677L|CACNA1G_uc002irz.1_Missense_Mutation_p.P1681L|CACNA1G_uc002isa.1_Missense_Mutation_p.P1654L|CACNA1G_uc002isb.1_Missense_Mutation_p.P1695L|CACNA1G_uc002isc.1_Missense_Mutation_p.P1677L|CACNA1G_uc002isd.1_Missense_Mutation_p.P1663L|CACNA1G_uc002ise.1_Missense_Mutation_p.P1643L|CACNA1G_uc002isf.1_Missense_Mutation_p.P1670L|CACNA1G_uc002isg.1_Missense_Mutation_p.P1636L|CACNA1G_uc002ish.1_Missense_Mutation_p.P1643L|CACNA1G_uc002isi.1_Missense_Mutation_p.P1631L	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1775	IV.|Extracellular (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	GAGACACACCCCTGTGAGGGC	0.612													26	61					0	0	0.005443	0	0
C17orf67	339210	broad.mit.edu	37	17	54892285	54892285	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:54892285C>T	uc010dci.2	-	2	180	c.173G>A	c.(172-174)AGA>AAA	p.R58K	C17orf67_uc002iuq.2_RNA	NM_001085430	NP_001078899	Q0P5P2	CQ067_HUMAN	hypothetical protein LOC339210 precursor	58						extracellular region					0	Breast(9;2.49e-06)					TCGCCGAGATCTTAGGAGCTG	0.512													93	436					0	0	0.003610	0	0
MSI2	124540	broad.mit.edu	37	17	55335632	55335632	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:55335632G>A	uc002iuz.1	+	4	360	c.187G>A	c.(187-189)GGC>AGC	p.G63S	MSI2_uc010wnm.1_Missense_Mutation_p.G41S|MSI2_uc002iva.2_Missense_Mutation_p.G59S	NM_138962	NP_620412	Q96DH6	MSI2H_HUMAN	musashi 2 isoform a	63	RRM 1.					cytoplasm	nucleotide binding|RNA binding			central_nervous_system(1)|pancreas(1)	2	Breast(9;1.78e-08)			GBM - Glioblastoma multiforme(1;0.0025)		TCCTTTCAGAGGCTTCGGTTT	0.448			T	HOXA9	CML								61	131					0	0	0.003610	0	0
PSMD12	5718	broad.mit.edu	37	17	65341909	65341909	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:65341909A>G	uc002jfy.2	-	8	946	c.860T>C	c.(859-861)GTT>GCT	p.V287A	PSMD12_uc002jga.2_Missense_Mutation_p.V267A|PSMD12_uc002jfz.2_Missense_Mutation_p.V228A|PSMD12_uc010det.1_Missense_Mutation_p.V287A	NM_002816	NP_002807	O00232	PSD12_HUMAN	proteasome 26S non-ATPase subunit 12 isoform 1	287	PCI.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	protein binding				0	all_cancers(12;2.38e-11)|all_epithelial(3;8.27e-13)					TATTCGGTGAACCAAATCTGA	0.358													26	39					0	0	0.002445	0	0
BPTF	2186	broad.mit.edu	37	17	65889738	65889738	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:65889738C>T	uc002jgf.2	+	6	2369	c.2308C>T	c.(2308-2310)CAT>TAT	p.H770Y	BPTF_uc002jge.2_Missense_Mutation_p.H896Y|BPTF_uc010wqm.1_Missense_Mutation_p.H833Y	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	896	Interaction with MAZ.				brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			CGGTTCTGTCCATGGGTCCAA	0.443													36	63					0	0	0.003610	0	0
ATP5H	10476	broad.mit.edu	37	17	73035134	73035134	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:73035134G>A	uc002jmn.1	-	6	443	c.379C>T	c.(379-381)CCA>TCA	p.P127S	KCTD2_uc010dfy.1_Intron|KCTD2_uc010dfz.2_Intron|ATP5H_uc002jmo.1_Missense_Mutation_p.P103S	NM_006356	NP_006347	O75947	ATP5H_HUMAN	ATP synthase, H+ transporting, mitochondrial F0	127					ATP catabolic process|respiratory electron transport chain	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	hydrogen ion transmembrane transporter activity				0	all_lung(278;0.226)					TGATCAAATGGAATTAAGTTC	0.408													12	67					0	0	0.001368	0	0
EVPL	2125	broad.mit.edu	37	17	74004837	74004837	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:74004837C>T	uc002jqi.2	-	22	4677	c.4449G>A	c.(4447-4449)TGG>TGA	p.W1483*	EVPL_uc010wss.1_Nonsense_Mutation_p.W1505*|EVPL_uc010wst.1_Nonsense_Mutation_p.W953*	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1483	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GGTCCAGGTCCCACCGCAGGG	0.587													29	121					0	0	0.001271	0	0
EXOC7	23265	broad.mit.edu	37	17	74084194	74084194	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:74084194C>T	uc002jqs.2	-	12	1557	c.1462G>A	c.(1462-1464)GAC>AAC	p.D488N	EXOC7_uc010dgv.1_Missense_Mutation_p.D384N|EXOC7_uc002jqq.2_Missense_Mutation_p.D437N|EXOC7_uc010wsw.1_Missense_Mutation_p.D460N|EXOC7_uc010wsx.1_Missense_Mutation_p.D429N|EXOC7_uc002jqr.2_Missense_Mutation_p.D406N|EXOC7_uc010wsv.1_Missense_Mutation_p.D396N	NM_001145297	NP_001138769	Q9UPT5	EXOC7_HUMAN	exocyst complex component 7 isoform 4	488					exocytosis|protein transport	centriolar satellite|cytosol|exocyst|plasma membrane	protein binding				0			LUSC - Lung squamous cell carcinoma(166;0.187)			TACTCCTTGTCCGGGTCATTC	0.632													43	91					0	0	0.003610	0	0
MGAT5B	146664	broad.mit.edu	37	17	74899435	74899435	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:74899435C>T	uc002jti.2	+	4	632	c.529C>T	c.(529-531)CCT>TCT	p.P177S	MGAT5B_uc002jth.2_Missense_Mutation_p.P166S	NM_198955	NP_945193	Q3V5L5	MGT5B_HUMAN	N-acetylglucosaminyltranferase VB isoform 2	166	Lumenal (Potential).					Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(2)|skin(1)	3						CCCCAAGTTCCCTGACTGCTC	0.647													31	41					0	0	0.002445	0	0
RNF213	57674	broad.mit.edu	37	17	78327434	78327434	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:78327434G>A	uc002jyh.1	+	9	4988	c.4765G>A	c.(4765-4767)GGA>AGA	p.G1589R	uc002jyi.1_RNA|RNF213_uc010dhw.1_5'Flank	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			TGAGAAGGTGGGAAAGGAAAC	0.557													22	82					0	0	0.002780	0	0
SIRT7	51547	broad.mit.edu	37	17	79872373	79872373	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:79872373C>T	uc002kcj.1	-	7	646	c.613G>A	c.(613-615)GTG>ATG	p.V205M	SIRT7_uc002kck.1_Missense_Mutation_p.V56M|SIRT7_uc002kcl.1_Missense_Mutation_p.V123M	NM_016538	NP_057622	Q9NRC8	SIRT7_HUMAN	sirtuin 7	205	Deacetylase sirtuin-type.				chromatin silencing|positive regulation of transcription on exit from mitosis|protein deacetylation|rRNA transcription	cytoplasm|nucleolus organizer region	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|NAD+ binding|protein binding|zinc ion binding				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.0165)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			AACACCCGCACGTACTCCCTG	0.637													30	89					0	0	0.002445	0	0
CETN1	1068	broad.mit.edu	37	18	580721	580721	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr18:580721G>A	uc002kko.1	+	1	355	c.313G>A	c.(313-315)GAA>AAA	p.E105K		NM_004066	NP_004057	Q12798	CETN1_HUMAN	centrin 1	105	EF-hand 3.				cell division|mitosis	spindle pole	ATP binding|ATP-dependent helicase activity|calcium ion binding|nucleic acid binding			upper_aerodigestive_tract(1)|ovary(1)	2						CACCAAAGAAGAAATCCTGAA	0.532													16	48					0	0	0.004007	0	0
CLUL1	27098	broad.mit.edu	37	18	618075	618075	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr18:618075G>A	uc002kkp.2	+	2	220	c.75G>A	c.(73-75)AAG>AAA	p.K25K	CLUL1_uc010wys.1_Silent_p.K77K|CLUL1_uc002kkq.2_Silent_p.K25K	NM_014410	NP_055225	Q15846	CLUL1_HUMAN	clusterin-like 1 (retinal) precursor	25					cell death	extracellular region				ovary(2)	2						CCACTTGGAAGGACAAAACTG	0.463													5	44					0	0	0.000602	0	0
KIAA0802	23255	broad.mit.edu	37	18	8784163	8784163	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr18:8784163G>A	uc002knr.2	+	6	1195	c.1053G>A	c.(1051-1053)AAG>AAA	p.K351K	KIAA0802_uc002knq.2_Silent_p.K351K|KIAA0802_uc010dkw.1_Silent_p.K189K	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	702	Potential.										0						TCAGCGGCAAGGTGCTCAAAC	0.682													6	42					0	0	0.001168	0	0
PPP4R1	9989	broad.mit.edu	37	18	9549287	9549288	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr18:9549287_9549288AG>TA	uc002koe.1	-	19	2714_2715	c.2596_2597CT>TA	c.(2596-2598)CTC>TAC	p.L866Y	PPP4R1_uc002kof.2_Missense_Mutation_p.L283Y|PPP4R1_uc010wzo.1_Missense_Mutation_p.L712Y|PPP4R1_uc002kod.1_Missense_Mutation_p.L849Y	NM_001042388	NP_001035847	Q8TF05	PP4R1_HUMAN	protein phosphatase 4, regulatory subunit 1	866	HEAT 14.				protein phosphorylation|signal transduction	protein phosphatase 4 complex	protein binding|protein phosphatase type 4 regulator activity			skin(1)	1						ATGCGGCATGAGATGCACAGCA	0.47													28	97					0	0	0.004672	0	0
TUBB6	84617	broad.mit.edu	37	18	12325740	12325740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr18:12325740C>T	uc002kqw.2	+	4	997	c.952C>T	c.(952-954)CGC>TGC	p.R318C	TUBB6_uc002kqv.2_Missense_Mutation_p.R246C|TUBB6_uc010dld.2_RNA|TUBB6_uc002kqx.2_Missense_Mutation_p.R281C|TUBB6_uc002kqy.2_Intron	NM_032525	NP_115914	Q9BUF5	TBB6_HUMAN	tubulin, beta 6	318					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0				READ - Rectum adenocarcinoma(1;0.0649)		CACCGTGTTCCGCGGGCCCAT	0.617													19	72					0	0	0.000958	0	0
ANKRD29	147463	broad.mit.edu	37	18	21197718	21197718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr18:21197718G>A	uc002kun.2	-	8	858	c.701C>T	c.(700-702)TCA>TTA	p.S234L	ANKRD29_uc002kuo.2_Missense_Mutation_p.S234L	NM_173505	NP_775776	Q8N6D5	ANR29_HUMAN	ankyrin repeat domain 29	234	ANK 7.									ovary(3)|breast(1)	4	all_cancers(21;5.07e-05)|all_epithelial(16;2.49e-07)|Lung NSC(20;0.00211)|all_lung(20;0.00676)|Colorectal(14;0.0202)|Ovarian(20;0.127)					AAGAGTGGGTGAGAATTTAAG	0.358													9	39					0	0	0.000673	0	0
LAMA3	3909	broad.mit.edu	37	18	21427576	21427576	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr18:21427576G>A	uc002kuq.2	+	32	4166	c.4080G>A	c.(4078-4080)AGG>AGA	p.R1360R	LAMA3_uc002kur.2_Silent_p.R1360R	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	1360	Domain III B.|Laminin EGF-like 11.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ACTGTTCCAGGAGGGGCACCA	0.652													9	33					0	0	0.000673	0	0
LAMA3	3909	broad.mit.edu	37	18	21501544	21501544	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr18:21501544G>A	uc002kuq.2	+	62	8258	c.8172G>A	c.(8170-8172)AGG>AGA	p.R2724R	LAMA3_uc002kur.2_Silent_p.R2668R|LAMA3_uc002kus.3_Silent_p.R1115R|LAMA3_uc002kut.3_Silent_p.R1059R	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	2724	Laminin G-like 2.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TTGCAATCAGGGAAAGGTAAG	0.338													22	99					0	0	0.005443	0	0
ASXL3	80816	broad.mit.edu	37	18	31323901	31323901	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr18:31323901G>A	uc010dmg.1	+	12	4144	c.4089G>A	c.(4087-4089)ATG>ATA	p.M1363I	ASXL3_uc002kxq.2_Missense_Mutation_p.M1070I	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1363					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						TTCCCCCAATGGGAATTAACA	0.488											OREG0024911	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	39	128					0	0	0.004878	0	0
SLC14A2	8170	broad.mit.edu	37	18	43224024	43224024	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr18:43224024C>T	uc010dnj.2	+	11	1571	c.1250C>T	c.(1249-1251)CCA>CTA	p.P417L	SLC14A2_uc002lbb.2_Missense_Mutation_p.P417L|SLC14A2_uc002lbe.2_Missense_Mutation_p.P417L	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	417						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						ACAAACAACCCAGCCATCTTC	0.567													41	98					0	0	0.001485	0	0
RNF165	494470	broad.mit.edu	37	18	44030306	44030306	+	Silent	SNP	T	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr18:44030306T>C	uc002lcb.1	+	5	714	c.663T>C	c.(661-663)CTT>CTC	p.L221L	RNF165_uc002lby.1_Silent_p.L154L|RNF165_uc010dnn.1_Silent_p.L17L	NM_152470	NP_689683	Q6ZSG1	RN165_HUMAN	ring finger protein 165	221							zinc ion binding				0				READ - Rectum adenocarcinoma(1;0.0873)		TTCACTTCCTTGCTCTCCAGG	0.517													13	44					0	0	0.002450	0	0
TCEB3B	51224	broad.mit.edu	37	18	44559634	44559634	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr18:44559634C>T	uc002lcr.1	-	1	2355	c.2002G>A	c.(2002-2004)GAA>AAA	p.E668K	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	668					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						TCCCCATTTTCGGGGTCAGCG	0.453													30	100					0	0	0.001786	0	0
KIAA0427	9811	broad.mit.edu	37	18	46383995	46383995	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr18:46383995C>T	uc002ldc.2	+	11	1849	c.1564C>T	c.(1564-1566)CTT>TTT	p.L522F	KIAA0427_uc002ldd.2_Missense_Mutation_p.L524F|KIAA0427_uc002lde.3_Missense_Mutation_p.L151F	NM_014772	NP_055587	O43310	CTIF_HUMAN	hypothetical protein LOC9811 isoform 1	522	MIF4G.				nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational initiation	perinuclear region of cytoplasm	protein binding				0						AGATGCTGTCCTTTGCTGCTC	0.547													15	60					0	0	0.000958	0	0
RNF152	220441	broad.mit.edu	37	18	59483414	59483414	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr18:59483414G>A	uc002lih.1	-	2	695	c.283C>T	c.(283-285)CCC>TCC	p.P95S		NM_173557	NP_775828	Q8N8N0	RN152_HUMAN	ring finger protein 152	95					apoptosis|protein K48-linked ubiquitination	integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			breast(1)	1		Colorectal(73;0.186)				CCATTGCTGGGAAGTTTGATG	0.647													7	38					0	0	0.001984	0	0
KIAA1468	57614	broad.mit.edu	37	18	59936121	59936121	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr18:59936121G>A	uc002lil.2	+	20	2915	c.2700G>A	c.(2698-2700)GGG>GGA	p.G900G	KIAA1468_uc002lik.1_Silent_p.G896G|KIAA1468_uc010xel.1_Silent_p.G900G|KIAA1468_uc002lim.2_Silent_p.G544G	NM_020854	NP_065905	Q9P260	K1468_HUMAN	hypothetical protein LOC57614	900							binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)	6		Colorectal(73;0.186)				CAGGAAATGGGGTCCTCACTA	0.289													11	21					0	0	0.001368	0	0
CNDP1	84735	broad.mit.edu	37	18	72250892	72250892	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr18:72250892C>T	uc002llq.2	+	11	1616	c.1405C>T	c.(1405-1407)CCG>TCG	p.P469S	CNDP1_uc002lls.2_Missense_Mutation_p.P272S	NM_032649	NP_116038	Q96KN2	CNDP1_HUMAN	carnosinase 1 precursor	469					proteolysis	extracellular region	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity|tripeptidase activity				0		Esophageal squamous(42;0.129)|Prostate(75;0.157)|Melanoma(33;0.211)		BRCA - Breast invasive adenocarcinoma(31;0.109)		GGTGCTAATTCCGCTGGGAGC	0.478													11	79					0	0	0.000978	0	0
PPAP2C	8612	broad.mit.edu	37	19	291298	291298	+	Silent	SNP	C	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:291298C>G	uc002loi.2	-	1	138	c.39G>C	c.(37-39)CTG>CTC	p.L13L	PPAP2C_uc002loh.2_5'Flank|PPAP2C_uc002loj.2_Intron	NM_003712	NP_003703	O43688	LPP2_HUMAN	phosphatidic acid phosphatase type 2C isoform 1	13	Helical; (Potential).				sphingolipid metabolic process	integral to membrane|plasma membrane	phosphatidate phosphatase activity|phosphoprotein phosphatase activity|sphingosine-1-phosphate phosphatase activity			central_nervous_system(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCAGTAAGCACAGCACGTCGA	0.736													4	63					0	0	0.000602	0	0
AZU1	566	broad.mit.edu	37	19	831868	831868	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:831868G>A	uc002lpz.1	+	5	763	c.747G>A	c.(745-747)GGG>GGA	p.G249G		NM_001700	NP_001691	P20160	CAP7_HUMAN	azurocidin 1 preproprotein	249					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis|cellular extravasation|defense response to Gram-negative bacterium|glial cell migration|induction of positive chemotaxis|inflammatory response|macrophage chemotaxis|microglial cell activation|monocyte activation|positive regulation of cell adhesion|positive regulation of fractalkine biosynthetic process|positive regulation of interleukin-1 beta biosynthetic process|positive regulation of MHC class II biosynthetic process|positive regulation of phagocytosis|positive regulation of tumor necrosis factor biosynthetic process|proteolysis|regulation of vascular permeability	azurophil granule|extracellular region	heparin binding|serine-type endopeptidase activity|toxin binding			pancreas(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;0.000172)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGGGACCGGGGCCAGCCTAGG	0.438													14	41					0	0	0.004007	0	0
ZNF77	58492	broad.mit.edu	37	19	2933775	2933775	+	Silent	SNP	G	A	A	rs140487750		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:2933775G>A	uc002lws.3	-	4	1481	c.1350C>T	c.(1348-1350)TCC>TCT	p.S450S		NM_021217	NP_067040	Q15935	ZNF77_HUMAN	zinc finger protein 77	450	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|zinc ion binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|GBM - Glioblastoma multiforme(1328;2.11e-07)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.174)|STAD - Stomach adenocarcinoma(1328;0.18)		GCTCTCGAAGGGAGGAGTGAC	0.502													6	38					0	0	0.001168	0	0
NFIC	4782	broad.mit.edu	37	19	3449011	3449011	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:3449011G>A	uc010xhi.1	+	7	1021	c.959_splice	c.e7-1	p.G320_splice	NFIC_uc002lxo.2_Splice_Site_p.G311_splice|NFIC_uc010xhh.1_Splice_Site_p.G311_splice|NFIC_uc002lxp.2_Splice_Site_p.G320_splice|NFIC_uc010xhj.1_Splice_Site_p.G320_splice	NM_205843	NP_995315	P08651	NFIC_HUMAN	nuclear factor I/C isoform 2						DNA replication|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;7.8e-05)|Epithelial(107;2.94e-108)|BRCA - Breast invasive adenocarcinoma(158;0.00154)|STAD - Stomach adenocarcinoma(1328;0.191)		CCCCTCCACAGGCATCTCGTC	0.597													20	85					0	0	0.003954	0	0
PLIN4	729359	broad.mit.edu	37	19	4513458	4513459	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:4513458_4513459CC>TT	uc002mar.1	-	3	471_472	c.471_472GG>AA	c.(469-474)ACGGTG>ACAATG	p.V158M	PLIN4_uc010dub.1_5'Flank	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	158	27 X 33 AA approximate tandem repeat.|2.					lipid particle|plasma membrane					0						CCAGTGGACACCGTGTCCTTGG	0.639													9	37					0	0	0.004672	0	0
C3	718	broad.mit.edu	37	19	6707488	6707488	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:6707488C>T	uc002mfm.2	-	16	2098	c.2036G>A	c.(2035-2037)CGA>CAA	p.R679Q		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	679					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TTTGTCCATTCGCTTCTCCGT	0.682													11	76					0	0	0.001368	0	0
FBN3	84467	broad.mit.edu	37	19	8151976	8151976	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:8151976C>T	uc002mjf.2	-	53	6760	c.6739G>A	c.(6739-6741)GGG>AGG	p.G2247R	FBN3_uc002mje.2_Missense_Mutation_p.G86R	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2247	EGF-like 36; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CAGCCCTCCCCAGAGCCAGGC	0.592													11	35					0	0	0.000673	0	0
ACTL9	284382	broad.mit.edu	37	19	8807915	8807915	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:8807915G>A	uc002mkl.2	-	1	1258	c.1137C>T	c.(1135-1137)TCC>TCT	p.S379S		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	379						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						CGATCCATACGGAGAAATTCC	0.657													13	25					0	0	0.002450	0	0
MUC16	94025	broad.mit.edu	37	19	9061891	9061891	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:9061891A>C	uc002mkp.2	-	3	25759	c.25555T>G	c.(25555-25557)TTT>GTT	p.F8519V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8521	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCTGACCAAAAGGTTGTTGTT	0.498													16	88					0	0	0.006122	0	0
MUC16	94025	broad.mit.edu	37	19	9065698	9065698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:9065698C>T	uc002mkp.2	-	3	21952	c.21748G>A	c.(21748-21750)GAG>AAG	p.E7250K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7252	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGCCTGTCTCCCTCAATTTA	0.483													42	125					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9067464	9067464	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:9067464C>T	uc002mkp.2	-	3	20186	c.19982G>A	c.(19981-19983)GGA>GAA	p.G6661E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6663	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTGCTGGTTCCCTTCAGCCC	0.512													18	73					0	0	0.006122	0	0
MUC16	94025	broad.mit.edu	37	19	9084946	9084946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:9084946G>A	uc002mkp.2	-	1	7073	c.6869C>T	c.(6868-6870)CCT>CTT	p.P2290L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2290	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCCAGGAATAGGTGTCACTCT	0.448													9	20					0	0	0.004482	0	0
MUC16	94025	broad.mit.edu	37	19	9090790	9090790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:9090790C>T	uc002mkp.2	-	1	1229	c.1025G>A	c.(1024-1026)AGG>AAG	p.R342K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	342	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCTTCTGACCCTTTCGGCACT	0.517													12	54					0	0	0.000978	0	0
AP1M2	10053	broad.mit.edu	37	19	10690440	10690440	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:10690440G>A	uc002mpc.2	-	7	852	c.768C>T	c.(766-768)ATC>ATT	p.I256I	AP1M2_uc002mpd.2_Silent_p.I258I	NM_005498	NP_005489	Q9Y6Q5	AP1M2_HUMAN	adaptor-related protein complex 1, mu 2 subunit	256	MHD.				cellular membrane organization|post-Golgi vesicle-mediated transport|protein targeting|regulation of defense response to virus by virus|vesicle targeting|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding			ovary(2)	2			Epithelial(33;1.58e-05)|all cancers(31;6.36e-05)			CATCAGGCGGGATGAAGGAGA	0.557													24	96					0	0	0.003330	0	0
CARM1	10498	broad.mit.edu	37	19	11031388	11031388	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:11031388C>T	uc002mpz.2	+	12	1514	c.1388C>T	c.(1387-1389)TCC>TTC	p.S463F	CARM1_uc010dxn.2_RNA|CARM1_uc002mqa.2_Missense_Mutation_p.S246F	NM_199141	NP_954592	Q86X55	CARM1_HUMAN	coactivator-associated arginine	463					cellular lipid metabolic process|histone H3-R2 methylation|interspecies interaction between organisms|pathogenesis|positive regulation of fat cell differentiation|regulation of estrogen receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleoplasm	beta-catenin binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-R17 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein-arginine omega-N asymmetric methyltransferase activity|transcription regulatory region DNA binding				0						GGCTCCAAGTCCAGTAACCTC	0.642													13	71					0	0	0.003163	0	0
LDLR	3949	broad.mit.edu	37	19	11216163	11216163	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:11216163G>A	uc002mqk.3	+	4	749	c.581G>A	c.(580-582)AGT>AAT	p.S194N	LDLR_uc010xlk.1_Missense_Mutation_p.S194N|LDLR_uc010xll.1_Missense_Mutation_p.S153N|LDLR_uc010xlm.1_Missense_Mutation_p.S47N|LDLR_uc010xln.1_Intron|LDLR_uc010xlo.1_Intron	NM_000527	NP_000518	P01130	LDLR_HUMAN	low density lipoprotein receptor precursor	194	Extracellular (Potential).				cholesterol homeostasis|cholesterol metabolic process|interspecies interaction between organisms|intestinal cholesterol absorption|low-density lipoprotein particle clearance|receptor-mediated endocytosis	clathrin-coated endocytic vesicle membrane|coated pit|early endosome|endosome membrane|external side of plasma membrane|integral to plasma membrane|low-density lipoprotein particle|lysosome	calcium ion binding|low-density lipoprotein receptor activity|protein binding|very-low-density lipoprotein particle receptor activity			ovary(2)|skin(2)	4		Lung NSC(9;0.000245)|Renal(1328;0.0007)|Hepatocellular(1079;0.0524)		GBM - Glioblastoma multiforme(1328;1.36e-05)|STAD - Stomach adenocarcinoma(1328;0.000766)|Lung(535;0.197)	Methyl aminolevulinate(DB00992)|Porfimer(DB00707)	CAAGGGGACAGTAGCCCCTGC	0.622													45	169					0	0	0.003214	0	0
LDLR	3949	broad.mit.edu	37	19	11224000	11224000	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:11224000G>A	uc002mqk.3	+	9	1401	c.1233G>A	c.(1231-1233)AAG>AAA	p.K411K	LDLR_uc010xlk.1_Silent_p.K411K|LDLR_uc010xll.1_Silent_p.K370K|LDLR_uc010xlm.1_Silent_p.K264K|LDLR_uc010xln.1_Silent_p.K284K|LDLR_uc010xlo.1_Silent_p.K243K	NM_000527	NP_000518	P01130	LDLR_HUMAN	low density lipoprotein receptor precursor	411	LDL-receptor class B 1.|Extracellular (Potential).				cholesterol homeostasis|cholesterol metabolic process|interspecies interaction between organisms|intestinal cholesterol absorption|low-density lipoprotein particle clearance|receptor-mediated endocytosis	clathrin-coated endocytic vesicle membrane|coated pit|early endosome|endosome membrane|external side of plasma membrane|integral to plasma membrane|low-density lipoprotein particle|lysosome	calcium ion binding|low-density lipoprotein receptor activity|protein binding|very-low-density lipoprotein particle receptor activity			ovary(2)|skin(2)	4		Lung NSC(9;0.000245)|Renal(1328;0.0007)|Hepatocellular(1079;0.0524)		GBM - Glioblastoma multiforme(1328;1.36e-05)|STAD - Stomach adenocarcinoma(1328;0.000766)|Lung(535;0.197)	Methyl aminolevulinate(DB00992)|Porfimer(DB00707)	AGGTCAGGAAGATGACGCTGG	0.627													50	221					0	0	0.003610	0	0
IL27RA	9466	broad.mit.edu	37	19	14150410	14150410	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:14150410C>T	uc002mxx.2	+	3	732	c.309C>T	c.(307-309)CTC>CTT	p.L103L		NM_004843	NP_004834	Q6UWB1	I27RA_HUMAN	class I cytokine receptor precursor	103	Extracellular (Potential).				cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity				0						CTGACAAACTCCTTGTCTGGG	0.607													12	68					0	0	0.000978	0	0
EMR3	84658	broad.mit.edu	37	19	14785576	14785576	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:14785576C>T	uc002mzi.3	-	1	155	c.7G>A	c.(7-9)GGA>AGA	p.G3R	EMR3_uc010dzp.2_Missense_Mutation_p.G3R|EMR3_uc010xnv.1_Missense_Mutation_p.G3R	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	3					neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						AGCAATGGTCCCTGCATTTCT	0.502													18	64					0	0	0.006122	0	0
OR7C2	26658	broad.mit.edu	37	19	15053071	15053071	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:15053071C>T	uc010xoc.1	+	1	771	c.771C>T	c.(769-771)GTC>GTT	p.V257V		NM_012377	NP_036509	O60412	OR7C2_HUMAN	olfactory receptor, family 7, subfamily C,	257	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Ovarian(108;0.203)					GCCTTGGGGTCTATCTCAGTT	0.547													26	99					0	0	0.003954	0	0
CYP4F11	57834	broad.mit.edu	37	19	16045035	16045035	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:16045035C>T	uc002nbu.2	-	2	220	c.184G>A	c.(184-186)GGA>AGA	p.G62R	CYP4F11_uc010eab.1_Missense_Mutation_p.G62R|CYP4F11_uc002nbt.2_Missense_Mutation_p.G62R	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	62					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						CCCTGGTGTCCCCAAAACCAG	0.607													7	34					0	0	0.003080	0	0
NWD1	284434	broad.mit.edu	37	19	16860484	16860484	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:16860484G>A	uc002neu.3	+	6	1453	c.1031G>A	c.(1030-1032)GGC>GAC	p.G344D	NWD1_uc002net.3_Missense_Mutation_p.G209D|NWD1_uc002nev.3_Missense_Mutation_p.G138D			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	344	ATP (Potential).|NACHT.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GGGCCCCCAGGCATTGGAAAG	0.632													11	35					0	0	0.000673	0	0
NWD1	284434	broad.mit.edu	37	19	16910870	16910870	+	Silent	SNP	T	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:16910870T>C	uc002neu.3	+	17	4055	c.3633T>C	c.(3631-3633)TTT>TTC	p.F1211F	NWD1_uc002net.3_Silent_p.F1076F|NWD1_uc002nev.3_Silent_p.F1005F			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1211							ATP binding			skin(3)|ovary(2)|pancreas(2)	7						CTGCACCATTTCTGGACCGCA	0.567													9	37					0	0	0.004482	0	0
UNC13A	23025	broad.mit.edu	37	19	17756850	17756850	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:17756850G>A	uc002nhd.2	-	18	2379	c.2379C>T	c.(2377-2379)GTC>GTT	p.V793V		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	705	C2 2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						TGGTCTTCCCGACCTGGACGG	0.567													10	25					0	0	0.000443	0	0
PIK3R2	5296	broad.mit.edu	37	19	18273852	18273852	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:18273852C>T	uc002nia.1	+	10	1697	c.1185C>T	c.(1183-1185)TTC>TTT	p.F395F	PIK3R2_uc002nib.1_RNA|PIK3R2_uc010ebi.1_RNA	NM_005027	NP_005018	O00459	P85B_HUMAN	phosphoinositide-3-kinase, regulatory subunit 2	395	SH2 1.				fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|negative regulation of anti-apoptosis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|T cell costimulation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	GTPase activator activity|phosphatidylinositol 3-kinase regulator activity|protein binding			lung(2)|stomach(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)	6						CACTCACCTTCTGCTCCGTTG	0.567													7	35					0	0	0.001984	0	0
HAPLN4	404037	broad.mit.edu	37	19	19369409	19369409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:19369409C>T	uc002nmb.2	-	4	795	c.740G>A	c.(739-741)GGG>GAG	p.G247E	HAPLN4_uc002nmc.2_Missense_Mutation_p.G247E	NM_023002	NP_075378	Q86UW8	HPLN4_HUMAN	hyaluronan and proteoglycan link protein 4	247	Link 1.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			pancreas(1)	1			Epithelial(12;0.00575)			GCGCAGGCCCCCGTTGGCATC	0.697													11	34					0	0	0.000673	0	0
TSSK6	83983	broad.mit.edu	37	19	19625778	19625778	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:19625778G>A	uc002nmr.2	-	1	692	c.459C>T	c.(457-459)ACC>ACT	p.T153T	TSSK6_uc002nmq.2_RNA|NDUFA13_uc002nms.2_5'Flank|NDUFA13_uc010xqx.1_5'Flank|NDUFA13_uc010xqy.1_5'Flank	NM_032037	NP_114426	Q9BXA6	TSSK6_HUMAN	testis-specific serine kinase 6	153	Protein kinase.				multicellular organismal development|sperm chromatin condensation		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			stomach(1)	1						AGCCGAAGTCGGTGAGCTTGA	0.682													12	33					0	0	0.001368	0	0
CILP2	148113	broad.mit.edu	37	19	19655235	19655235	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:19655235C>T	uc002nmv.3	+	8	1966	c.1881C>T	c.(1879-1881)TTC>TTT	p.F627F	CILP2_uc002nmw.3_Silent_p.F633F	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	627						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						ACCTGCGCTTCGTGGACAGCG	0.721													24	94					0	0	0.003330	0	0
ATP13A1	57130	broad.mit.edu	37	19	19766199	19766199	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:19766199G>A	uc002nnh.3	-	11	1488	c.1460C>T	c.(1459-1461)TCG>TTG	p.S487L	ATP13A1_uc002nnf.3_5'UTR|ATP13A1_uc002nng.2_Missense_Mutation_p.S369L	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	487	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(3)|large_intestine(2)|central_nervous_system(1)	6						AGGCACGACCGAGGTGAGGAT	0.627													5	31					0	0	0.000602	0	0
ZNF14	7561	broad.mit.edu	37	19	19825193	19825193	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:19825193G>A	uc002nnk.1	-	2	261	c.107C>T	c.(106-108)ACC>ATC	p.T36I		NM_021030	NP_066358	P17017	ZNF14_HUMAN	zinc finger protein 14	36	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Renal(1328;0.0474)				GTTTTTGAAGGTCTCCTGCAT	0.433													17	60					0	0	0.004007	0	0
LOC284441	284441	broad.mit.edu	37	19	20369251	20369251	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:20369251T>A	uc002nov.2	+	1	795	c.44T>A	c.(43-45)GTT>GAT	p.V15D		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						ATGTTAGAAGTTAACTACCCT	0.373													21	73					0	0	0.001882	0	0
LOC284441	284441	broad.mit.edu	37	19	20369866	20369866	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:20369866G>A	uc002nov.2	+	1	1410	c.659G>A	c.(658-660)GGA>GAA	p.G220E		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						AATGTTGAAGGAGTTGGTGTT	0.413													6	34					0	0	0.001168	0	0
FFAR3	2865	broad.mit.edu	37	19	35850642	35850642	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:35850642C>T	uc002nzd.2	+	2	925	c.850C>T	c.(850-852)CAA>TAA	p.Q284*	FFAR3_uc010xsu.1_Intron	NM_005304	NP_005295	O14843	FFAR3_HUMAN	free fatty acid receptor 3	284	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity|lipid binding				0	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;1.29e-19)|OV - Ovarian serous cystadenocarcinoma(14;4.63e-18)|all cancers(14;5.19e-17)|LUSC - Lung squamous cell carcinoma(66;0.0221)			CTCCGGGTTCCAAGCCGACTT	0.602													10	50					0	0	0.001855	0	0
ARHGAP33	115703	broad.mit.edu	37	19	36271932	36271932	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:36271932G>A	uc002obr.1	+	11	1025	c.940G>A	c.(940-942)GGC>AGC	p.G314S	ARHGAP33_uc002obs.1_Missense_Mutation_p.G314S|ARHGAP33_uc002obt.1_Missense_Mutation_p.G178S|ARHGAP33_uc010eel.2_5'Flank|ARHGAP33_uc002obv.1_5'Flank	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	314					cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						GAGGGTGTTTGGCTGCGATCT	0.711													14	44					0	0	0.003163	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38572699	38572699	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:38572699C>G	uc002ohk.2	+	3	1003	c.494C>G	c.(493-495)CCC>CGC	p.P165R		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	165					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GCCTTCCTCCCCCTTCGGCAC	0.716													15	54					0	0	0.004990	0	0
RYR1	6261	broad.mit.edu	37	19	38981316	38981316	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:38981316C>T	uc002oit.2	+	37	6201	c.6071C>T	c.(6070-6072)CCT>CTT	p.P2024L	RYR1_uc002oiu.2_Missense_Mutation_p.P2024L	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2024	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TGTCCTCTCCCTGAAGAGATT	0.463													9	36					0	0	0.004482	0	0
NFKBIB	4793	broad.mit.edu	37	19	39398053	39398054	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:39398053_39398054CC>TT	uc002ojw.2	+	5	781_782	c.723_724CC>TT	c.(721-726)GGCCGG>GGTTGG	p.R242W	NFKBIB_uc002ojx.2_Missense_Mutation_p.R210W|NFKBIB_uc002ojy.2_Missense_Mutation_p.R242W	NM_002503	NP_002494	Q15653	IKBB_HUMAN	nuclear factor of kappa light polypeptide gene	242	ANK 5.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription, DNA-dependent	cytosol|nucleus	protein binding|signal transducer activity|transcription coactivator activity			lung(1)|kidney(1)	2	all_cancers(60;4.39e-06)|Ovarian(47;0.0454)		Lung(45;0.000419)|LUSC - Lung squamous cell carcinoma(53;0.000554)			CCACGTGCGGCCGGAGCCCCCT	0.688													8	81					0	0	0.004672	0	0
LRFN1	57622	broad.mit.edu	37	19	39799143	39799143	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:39799143G>C	uc002okw.2	-	2	1446	c.1446C>G	c.(1444-1446)GAC>GAG	p.D482E		NM_020862	NP_065913	Q9P244	LRFN1_HUMAN	leucine rich repeat and fibronectin type III	482	Fibronectin type-III.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic density|postsynaptic membrane				ovary(2)	2	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;1.96e-27)|all cancers(26;2.05e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			CCGCCGCCAGGTCATTCACCA	0.657													9	21					0	0	0.001855	0	0
GRIK5	2901	broad.mit.edu	37	19	42563509	42563509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:42563509G>A	uc002osj.1	-	5	714	c.679C>T	c.(679-681)CTC>TTC	p.L227F	GRIK5_uc010eib.1_Missense_Mutation_p.L146F	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor	227	Extracellular (Potential).					cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	ACCTTACGGAGGATGAGGTGG	0.597													12	70					0	0	0.004007	0	0
MEGF8	1954	broad.mit.edu	37	19	42847656	42847656	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:42847656A>T	uc002otl.3	+	9	2176	c.1541A>T	c.(1540-1542)TAC>TTC	p.Y514F	MEGF8_uc002otm.3_Missense_Mutation_p.Y55F	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	514	Extracellular (Potential).					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				AGTGGTCGGTACTCACATGTA	0.637													13	45					0	0	0.003163	0	0
MEGF8	1954	broad.mit.edu	37	19	42875635	42875635	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:42875635G>A	uc002otl.3	+	40	7703	c.7068_splice	c.e40+1	p.Q2356_splice	MEGF8_uc002otm.3_Splice_Site_p.Q1964_splice|MEGF8_uc002otn.3_Intron	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8							integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				CAAGTACCAGGTGCGGCTGCA	0.617													10	61					0	0	0.000978	0	0
PSG8	440533	broad.mit.edu	37	19	43262407	43262407	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:43262407G>A	uc002ouo.2	-	3	554	c.456C>T	c.(454-456)TCC>TCT	p.S152S	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc010eim.2_RNA|PSG8_uc002oui.2_5'UTR|PSG8_uc002ouh.2_Silent_p.S152S|PSG8_uc010ein.2_Silent_p.S30S|PSG8_uc002ouj.3_Intron|PSG8_uc002ouk.3_5'UTR|PSG8_uc002oul.3_Silent_p.S152S|PSG8_uc002oum.3_Intron|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Intron	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	152	Ig-like C2-type 1.					extracellular region					0		Prostate(69;0.00899)				ATTTGCTGCTGGAGATGGAGG	0.512													37	165					0	0	0.001706	0	0
C19orf61	56006	broad.mit.edu	37	19	44254780	44254780	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:44254780C>T	uc002oxj.2	-	2	457	c.114G>A	c.(112-114)GAG>GAA	p.E38E	C19orf61_uc002oxk.2_Silent_p.E38E|C19orf61_uc010eiy.1_Silent_p.E38E	NM_019108	NP_061981	Q9H0W8	SMG9_HUMAN	SMG9 protein	38					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	intracellular	protein binding				0		Prostate(69;0.0352)				TGTAGTCCCTCTCCCGACCAC	0.493													14	66					0	0	0.004007	0	0
ZNF230	7773	broad.mit.edu	37	19	44515263	44515263	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:44515263C>T	uc002oyb.1	+	5	1323	c.1072C>T	c.(1072-1074)CAC>TAC	p.H358Y		NM_006300	NP_006291	Q9UIE0	ZN230_HUMAN	zinc finger protein 230	358	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				TCAGCGAATCCACAGTGGAGA	0.443													17	60					0	0	0.004990	0	0
RTN2	6253	broad.mit.edu	37	19	45998060	45998060	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:45998060C>T	uc002pcb.2	-	3	511	c.283G>A	c.(283-285)GAA>AAA	p.E95K	RTN2_uc002pcc.2_Missense_Mutation_p.E95K|RTN2_uc002pcd.2_RNA	NM_005619	NP_005610	O75298	RTN2_HUMAN	reticulon 2 isoform A	95						integral to endoplasmic reticulum membrane	signal transducer activity			ovary(3)	3		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00829)|Epithelial(262;0.184)|GBM - Glioblastoma multiforme(486;0.246)		TCTCGTGGTTCCGAGACTGAG	0.677													7	38					0	0	0.003080	0	0
RSPH6A	81492	broad.mit.edu	37	19	46307638	46307638	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:46307638C>T	uc002pdm.2	-	3	1668	c.1525G>A	c.(1525-1527)GAG>AAG	p.E509K	RSPH6A_uc002pdl.2_Missense_Mutation_p.E245K	NM_030785	NP_110412	Q9H0K4	RSH6A_HUMAN	radial spokehead-like 1	509	Glu-rich.					intracellular				ovary(1)|central_nervous_system(1)	2						TCCTCCTCCTCGTCGCCCTCC	0.657													13	33					0	0	0.001855	0	0
SLC8A2	6543	broad.mit.edu	37	19	47969382	47969382	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:47969382G>A	uc002pgx.2	-	2	557	c.279C>T	c.(277-279)TTC>TTT	p.F93F	SLC8A2_uc010xyq.1_Intron|SLC8A2_uc010xyr.1_Intron|SLC8A2_uc010ele.2_Silent_p.F93F	NM_015063	NP_055878	Q9UPR5	NAC2_HUMAN	solute carrier family 8 member 2 precursor	93	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(1)	4		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)		OV - Ovarian serous cystadenocarcinoma(262;0.000501)|all cancers(93;0.00058)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0457)		TGGCCGCCATGAAACGGTCGG	0.582													12	41					0	0	0.001368	0	0
CRX	1406	broad.mit.edu	37	19	48342687	48342688	+	Missense_Mutation	DNP	GG	AC	AC	rs141888455		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:48342687_48342688GG>AC	uc002phq.3	+	4	567_568	c.363_364GG>AC	c.(361-366)GCGGGC>GCACGC	p.G122R		NM_000554	NP_000545	O43186	CRX_HUMAN	cone-rod homeobox protein	122			G -> D (in RP).		organ morphogenesis|response to stimulus|visual perception		leucine zipper domain binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|central_nervous_system(1)	2		all_cancers(25;2.76e-09)|all_epithelial(76;7.01e-07)|all_lung(116;2.48e-06)|Lung NSC(112;5.15e-06)|Ovarian(192;0.0139)|all_neural(266;0.0146)|Breast(70;0.133)		OV - Ovarian serous cystadenocarcinoma(262;0.000266)|all cancers(93;0.000788)|Epithelial(262;0.0226)|GBM - Glioblastoma multiforme(486;0.0521)		AGAGGAAGGCGGGCACGTCCCC	0.55													14	46					0	0	0.004672	0	0
LIG1	3978	broad.mit.edu	37	19	48639036	48639036	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:48639036T>A	uc002pia.1	-	16	1544	c.1424A>T	c.(1423-1425)GAA>GTA	p.E475V	LIG1_uc010xze.1_Missense_Mutation_p.E168V|LIG1_uc002phz.1_RNA|LIG1_uc002pib.1_RNA|LIG1_uc010xzf.1_Missense_Mutation_p.E407V|LIG1_uc010xzg.1_Missense_Mutation_p.E444V	NM_000234	NP_000225	P18858	DNLI1_HUMAN	DNA ligase I	475					anatomical structure morphogenesis|base-excision repair|cell division|DNA ligation involved in DNA repair|DNA strand elongation involved in DNA replication|double-strand break repair via homologous recombination|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding			large_intestine(2)|lung(1)	3		all_epithelial(76;3.1e-06)|all_lung(116;4.39e-06)|Lung NSC(112;8.96e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;8.45e-05)|all cancers(93;0.000423)|Epithelial(262;0.0177)|GBM - Glioblastoma multiforme(486;0.0329)	Bleomycin(DB00290)	TGGTGGGAATTCTAAGAAAAG	0.562								NER					21	80					0	0	0.002299	0	0
PRR12	57479	broad.mit.edu	37	19	50098425	50098425	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:50098425C>T	uc002poo.3	+	4	833	c.833C>T	c.(832-834)CCT>CTT	p.P278L		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	14	Pro-rich.						DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		CCACCGCCGCCTGAGCGGGCC	0.706													3	15					0	0	0.004672	0	0
MYH14	79784	broad.mit.edu	37	19	50794224	50794224	+	Silent	SNP	A	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:50794224A>G	uc002prr.1	+	34	4970	c.4923A>G	c.(4921-4923)GGA>GGG	p.G1641G	MYH14_uc010enu.1_Silent_p.G1682G|MYH14_uc002prq.1_Silent_p.G1649G|MYH14_uc010ycb.1_5'UTR|MYH14_uc002prs.1_5'UTR	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	1641	Potential.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		AGCTGGAGGGAGAGCTGGAGG	0.647													3	7					0	0	0.004672	0	0
SPIB	6689	broad.mit.edu	37	19	50926861	50926861	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:50926861G>A	uc002psd.2	+	5	365	c.340_splice	c.e5-1	p.T114_splice	SPIB_uc002pse.2_Splice_Site_p.T114_splice|SPIB_uc010ycc.1_Splice_Site_p.T23_splice	NM_003121	NP_003112	Q01892	SPIB_HUMAN	Spi-B transcription factor (Spi-1/PU.1 related)						regulation of transcription from RNA polymerase II promoter	cytoplasm|microtubule cytoskeleton|nucleus	sequence-specific DNA binding			lung(1)|kidney(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00757)|GBM - Glioblastoma multiforme(134;0.0186)		ACCTTCCGCAGACCCTGGTTC	0.647													5	29					0	0	0.001168	0	0
ZNF28	7576	broad.mit.edu	37	19	53303297	53303297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:53303297G>A	uc002qad.2	-	4	1921	c.1801C>T	c.(1801-1803)CAT>TAT	p.H601Y	ZNF28_uc002qac.2_Missense_Mutation_p.H548Y|ZNF28_uc010eqe.2_Missense_Mutation_p.H547Y	NM_006969	NP_008900	P17035	ZNF28_HUMAN	zinc finger protein 28	601	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(134;0.0386)|Lung(386;0.145)		TCTCCAGTATGAACTCTCTGA	0.448													22	135					0	0	0.001061	0	0
ZNF331	55422	broad.mit.edu	37	19	54080951	54080951	+	Silent	SNP	C	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:54080951C>G	uc002qbx.1	+	7	2571	c.1137C>G	c.(1135-1137)GGC>GGG	p.G379G	ZNF331_uc002qby.1_Silent_p.G379G|ZNF331_uc002qbz.1_Silent_p.G379G|ZNF331_uc002qca.1_Silent_p.G379G|ZNF331_uc010eqr.1_Silent_p.G379G|ZNF331_uc002qcb.1_Silent_p.G379G|ZNF331_uc002qcc.1_Silent_p.G379G|ZNF331_uc002qcd.1_Silent_p.G379G	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	379					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		TCCACACAGGCGAAACCCCGT	0.493			T	?	follicular thyroid adenoma								5	50					0	0	0.000602	0	0
MIR520F	574464	broad.mit.edu	37	19	54185498	54185498	+	RNA	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:54185498G>A	hsa-mir-520f|MI0003146	+			c.86G>A			uc010yea.1_5'Flank|MIR515-2_hsa-mir-515-2|MI0003147_5'Flank																	0						TACCGTTTGGGAAAAGCAATG	0.428													6	29					0	0	0.001168	0	0
LILRA1	11024	broad.mit.edu	37	19	55106787	55106787	+	Missense_Mutation	SNP	C	T	T	rs151320443		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:55106787C>T	uc002qgh.1	+	5	763	c.581C>T	c.(580-582)TCG>TTG	p.S194L	LILRA2_uc010yfg.1_Intron|LILRA1_uc010yfh.1_Missense_Mutation_p.S194L	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	194	Ig-like C2-type 2.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		CGCAGGTGGTCGTACAGGTGC	0.572													36	110					0	0	0.003755	0	0
LILRB1	10859	broad.mit.edu	37	19	55143678	55143678	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:55143678C>T	uc002qgj.2	+	6	991	c.651C>T	c.(649-651)CTC>CTT	p.L217L	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Silent_p.L217L|LILRB1_uc002qgk.2_Silent_p.L217L|LILRB1_uc002qgm.2_Silent_p.L217L|LILRB1_uc010erq.2_Silent_p.L217L|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	217	Ig-like C2-type 2.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		TCCTGGAGCTCCTGGTCCTAG	0.587										HNSCC(37;0.09)			22	90					0	0	0.003954	0	0
LILRB4	11006	broad.mit.edu	37	19	55179188	55179188	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:55179188G>A	uc002qgp.2	+	11	1506	c.1144G>A	c.(1144-1146)GAA>AAA	p.E382K	LILRB4_uc002qgq.2_Missense_Mutation_p.E381K|LILRB4_uc002qgr.2_Missense_Mutation_p.E424K|LILRB4_uc010ert.2_Missense_Mutation_p.E423K|LILRB4_uc010eru.2_Missense_Mutation_p.E412K	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	382	Cytoplasmic (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		ACTGTCTGGGGAATTCCTGGA	0.592													5	28					0	0	0.001168	0	0
LILRP2	79166	broad.mit.edu	37	19	55224690	55224690	+	RNA	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:55224690G>A	uc002qgs.1	+	1		c.5090G>A			LILRP2_uc002qgt.1_RNA	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						GCTGCTTTAGGATTGGCACAG	0.542													5	15					0	0	0.000602	0	0
KIR3DL3	115653	broad.mit.edu	37	19	55247300	55247300	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:55247300G>A	uc002qgu.1	+	7	1086	c.1068G>A	c.(1066-1068)ATG>ATA	p.M356I	KIR2DL3_uc002qgv.2_Intron|KIR2DL3_uc002qgx.2_5'Flank|KIR2DL3_uc002qgy.2_5'Flank|KIR2DL3_uc010erw.1_5'Flank	NM_153443	NP_703144	Q8N743	KI3L3_HUMAN	killer cell immunoglobulin-like receptor, three	356	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(193;0.0192)		CTGTTGTAATGGACCAAGAGC	0.522													14	89					0	0	0.001882	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55331401	55331401	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:55331401G>A	uc002qhk.3	+	4	652	c.589G>A	c.(589-591)GGT>AGT	p.G197S	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR3DL1_uc010yfn.1_Missense_Mutation_p.G139S|KIR3DL1_uc010esf.2_Missense_Mutation_p.G102S|KIR3DL1_uc010yfo.1_Missense_Mutation_p.G139S|KIR3DL1_uc002qhl.3_Missense_Mutation_p.G197S	NM_013289	NP_037421	P43629	KI3L1_HUMAN	killer cell immunoglobulin-like receptor, three	197	Extracellular (Potential).|Ig-like C2-type 2.				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		CAGATGCTACGGTTCTGTTAC	0.537													27	116					0	0	0.002445	0	0
NLRP13	126204	broad.mit.edu	37	19	56424493	56424493	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:56424493C>T	uc010ygg.1	-	5	715	c.690G>A	c.(688-690)ACG>ACA	p.T230T		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	230	NACHT.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CCAAGACTATCGTCTGGGCCT	0.522													30	102					0	0	0.002096	0	0
USP29	57663	broad.mit.edu	37	19	57640915	57640915	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:57640915G>A	uc002qny.2	+	4	1228	c.872G>A	c.(871-873)GGA>GAA	p.G291E		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	291					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CCCAATTTGGGAAACACCTGT	0.473													11	29					0	0	0.000673	0	0
GREB1	9687	broad.mit.edu	37	2	11706653	11706653	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:11706653G>A	uc002rbk.1	+	4	625	c.325G>A	c.(325-327)GAG>AAG	p.E109K	GREB1_uc002rbl.2_Missense_Mutation_p.E109K|GREB1_uc002rbm.2_5'UTR|GREB1_uc002rbn.1_Missense_Mutation_p.E109K	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	109						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		CATTTCCAACGAGCCCATGGA	0.642													18	55					0	0	0.000958	0	0
GREB1	9687	broad.mit.edu	37	2	11772080	11772080	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:11772080C>T	uc002rbk.1	+	27	4957	c.4657C>T	c.(4657-4659)CGT>TGT	p.R1553C	GREB1_uc002rbp.1_Missense_Mutation_p.R551C	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	1553						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		AACCACCGGCCGTCACGAACA	0.378													12	66					0	0	0.001368	0	0
FAM49A	81553	broad.mit.edu	37	2	16740826	16740826	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:16740826C>G	uc010exm.1	-	9	887	c.739G>C	c.(739-741)GAG>CAG	p.E247Q	FAM49A_uc002rck.1_Missense_Mutation_p.E247Q	NM_030797	NP_110424	Q9H0Q0	FA49A_HUMAN	family with sequence similarity 49, member A	247						intracellular					0	Acute lymphoblastic leukemia(172;0.0734)|all_hematologic(175;0.088)		GBM - Glioblastoma multiforme(3;0.00969)			ATCAGGGTCTCTTCACTCGTA	0.502													21	76					0	0	0.001523	0	0
TP53I3	9540	broad.mit.edu	37	2	24300515	24300515	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:24300515C>T	uc002rey.1	-	6	993	c.933G>A	c.(931-933)CAG>CAA	p.Q311Q	LOC375190_uc002rew.2_Intron|SF3B14_uc002rev.2_5'Flank|SF3B14_uc010eyb.2_5'Flank|TP53I3_uc002rex.1_Missense_Mutation_p.G246R|TP53I3_uc002rez.1_Silent_p.Q311Q|TP53I3_uc010ykk.1_Silent_p.Q222Q	NM_147184	NP_671713	Q53FA7	QORX_HUMAN	tumor protein p53 inducible protein 3	311					induction of apoptosis by oxidative stress|NADP metabolic process		NADPH binding|NADPH:quinone reductase activity|protein homodimerization activity|quinone binding|zinc ion binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TATGGGCCTCCTGGATTTCGG	0.577													14	57					0	0	0.004007	0	0
DPYSL5	56896	broad.mit.edu	37	2	27121457	27121457	+	Silent	SNP	C	T	T	rs144960416		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:27121457C>T	uc002rhu.3	+	2	248	c.90C>T	c.(88-90)ATC>ATT	p.I30I	DPYSL5_uc002rhv.3_Silent_p.I30I	NM_020134	NP_064519	Q9BPU6	DPYL5_HUMAN	dihydropyrimidinase-like 5	30					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACGTCTACATCGAGAATGGCA	0.577													10	69					0	0	0.000443	0	0
C2orf16	84226	broad.mit.edu	37	2	27800226	27800226	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:27800226G>A	uc002rkz.3	+	1	838	c.787G>A	c.(787-789)GAA>AAA	p.E263K		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	263										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					TGTGGAATATGAAGGGATTAC	0.453													22	92					0	0	0.001523	0	0
LTBP1	4052	broad.mit.edu	37	2	33589288	33589288	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:33589288G>A	uc002ros.2	+	30	4408	c.4408G>A	c.(4408-4410)GAT>AAT	p.D1470N	LTBP1_uc002rot.2_Missense_Mutation_p.D1144N|LTBP1_uc002rou.2_Missense_Mutation_p.D1143N|LTBP1_uc002rov.2_Missense_Mutation_p.D1090N|LTBP1_uc010ymz.1_Missense_Mutation_p.D1101N|LTBP1_uc010yna.1_Missense_Mutation_p.D1048N|LTBP1_uc010ynb.1_Missense_Mutation_p.D367N	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1469	EGF-like 16; calcium-binding (Potential).				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				TTAAGATATGGATGAATGTCA	0.403													11	66					0	0	0.002450	0	0
TTC7A	57217	broad.mit.edu	37	2	47177586	47177586	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:47177586C>T	uc002rvo.2	+	2	637	c.269C>T	c.(268-270)CCT>CTT	p.P90L	TTC7A_uc002rvm.2_Missense_Mutation_p.P56L|TTC7A_uc002rvn.1_5'UTR|TTC7A_uc010fbb.2_Missense_Mutation_p.P90L|TTC7A_uc010fbc.2_5'UTR|TTC7A_uc002rvp.2_5'UTR	NM_020458	NP_065191	Q9ULT0	TTC7A_HUMAN	tetratricopeptide repeat domain 7A	90							binding			breast(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	Lung(47;0.0792)|LUSC - Lung squamous cell carcinoma(58;0.114)			GACTCCATGCCTTTGCTGGAG	0.473													24	68					0	0	0.002780	0	0
GPR75	10936	broad.mit.edu	37	2	54081434	54081434	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:54081434G>A	uc002rxo.3	-	2	731	c.460C>T	c.(460-462)CGC>TGC	p.R154C	ASB3_uc002rxi.3_Intron	NM_006794	NP_006785	O95800	GPR75_HUMAN	G protein-coupled receptor 75	154	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|skin(1)	2			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			GAGGCCGTGCGATTAGGCTGT	0.562													18	71					0	0	0.001216	0	0
PSME4	23198	broad.mit.edu	37	2	54146315	54146315	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:54146315G>A	uc002rxp.2	-	20	2545	c.2489C>T	c.(2488-2490)CCG>CTG	p.P830L	PSME4_uc010yop.1_Missense_Mutation_p.P716L|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_Missense_Mutation_p.P205L|PSME4_uc010fbv.1_Intron	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	830					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			TCCTTTCAACGGAGGTAGGAG	0.318													9	42					0	0	0.000443	0	0
RPL23AP32	56969	broad.mit.edu	37	2	54756579	54756579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:54756579C>T	uc010yot.1	+	1	221	c.97C>T	c.(97-99)CAC>TAC	p.H33Y	SPTBN1_uc002rxu.2_Intron|SPTBN1_uc002rxv.1_Intron	NR_002229				SubName: Full=Putative uncharacterized protein DKFZp547I014;												0						GAAAGGTGTCCACGGCCACAA	0.542													8	45					0	0	0.003080	0	0
BCL11A	53335	broad.mit.edu	37	2	60687571	60687571	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:60687571G>A	uc002sae.1	-	4	2704	c.2476C>T	c.(2476-2478)CGA>TGA	p.R826*	BCL11A_uc002sab.2_Intron|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Intron|BCL11A_uc010ypj.1_Intron|BCL11A_uc002sad.1_Nonsense_Mutation_p.R674*|BCL11A_uc002saf.1_Nonsense_Mutation_p.R792*	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	826					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			TTCAACACTCGATCACTGTGC	0.443			T	IGH@	B-CLL								119	440					0	0	0.003610	0	0
AHSA2	130872	broad.mit.edu	37	2	61413920	61413920	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:61413920G>A	uc002sbc.1	+	6	1999	c.413G>A	c.(412-414)TGA>TAA	p.*138*	AHSA2_uc002sbb.1_RNA	NM_152392	NP_689605	Q719I0	AHSA2_HUMAN	AHA1, activator of heat shock 90kDa protein	138					response to stress	cytoplasm	ATPase activator activity|chaperone binding			breast(1)	1			Epithelial(17;0.0994)			CTAAATGGTTGAATTAAAATT	0.328													6	21					0	0	0.001984	0	0
PROKR1	10887	broad.mit.edu	37	2	68872957	68872957	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:68872957G>A	uc010yqj.1	+	1	4	c.4G>A	c.(4-6)GAG>AAG	p.E2K	PROKR1_uc002ses.2_RNA	NM_138964	NP_620414	Q8TCW9	PKR1_HUMAN	G protein-coupled receptor 73	2	Extracellular (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(1)	1						TGGCCAGATGGAGACCACCAT	0.557													20	80					0	0	0.001216	0	0
PROKR1	10887	broad.mit.edu	37	2	68873115	68873115	+	Silent	SNP	T	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:68873115T>C	uc010yqj.1	+	1	162	c.162T>C	c.(160-162)AAT>AAC	p.N54N	PROKR1_uc002ses.2_RNA	NM_138964	NP_620414	Q8TCW9	PKR1_HUMAN	G protein-coupled receptor 73	54	Extracellular (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(1)	1						ATGTGACCAATTCCAGGACGT	0.512													29	125					0	0	0.001786	0	0
CYP26B1	56603	broad.mit.edu	37	2	72359359	72359359	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:72359359G>A	uc002sih.1	-	6	1536	c.1536C>T	c.(1534-1536)GTC>GTT	p.V512V	CYP26B1_uc010yra.1_Silent_p.V495V|CYP26B1_uc010yrb.1_Silent_p.V437V	NM_019885	NP_063938	Q9NR63	CP26B_HUMAN	cytochrome P450, family 26, subfamily b,	512					cell fate determination|embryonic limb morphogenesis|male meiosis|negative regulation of retinoic acid receptor signaling pathway|proximal/distal pattern formation|retinoic acid catabolic process|spermatogenesis|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			skin(2)	2						TCTTGGGTTAGACTGTGGCGC	0.657													3	11					0	0	0.000248	0	0
LRRTM4	80059	broad.mit.edu	37	2	76975869	76975869	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:76975869G>A	uc002snr.2	-	4	2140	c.1725C>T	c.(1723-1725)ATC>ATT	p.I575I	LRRTM4_uc002snq.2_Silent_p.I575I	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	575	Cytoplasmic (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		CCGACCTGGCGATGGTGGCGA	0.612													37	155					0	0	0.003610	0	0
REG1A	5967	broad.mit.edu	37	2	79348794	79348795	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:79348794_79348795GG>AA	uc002snz.2	+	3	274_275	c.171_172GG>AA	c.(169-174)TGGGTT>TGAATT	p.57_58WV>*I	REG1A_uc010ffx.1_Nonsense_Mutation_p.57_58WV>*I|REG1A_uc010ysd.1_Nonsense_Mutation_p.57_58WV>*I	NM_002909	NP_002900	P05451	REG1A_HUMAN	regenerating islet-derived 1 alpha precursor	57_58	C-type lectin.				positive regulation of cell proliferation	extracellular region	growth factor activity|sugar binding				0						GTGAGACCTGGGTTGATGCAGA	0.559													31	102					0	0	0.004672	0	0
FUNDC2P2	388965	broad.mit.edu	37	2	84518272	84518272	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:84518272C>T	uc010ffz.1	+	1	467	c.330C>T	c.(328-330)ATC>ATT	p.I110I		NR_003663				RecName: Full=FUN14 domain-containing protein 2; AltName: Full=Hepatitis C virus core-binding protein 6; AltName: Full=Cervical cancer proto-oncogene 3 protein;          Short=HCC-3;												0						AGCTGAAGATCCCTAAGAGCA	0.453													9	45					0	0	0.004482	0	0
RETSAT	54884	broad.mit.edu	37	2	85577962	85577962	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:85577962G>A	uc002spd.2	-	3	729	c.538C>T	c.(538-540)CTC>TTC	p.L180F	RETSAT_uc010fge.2_RNA|RETSAT_uc010ysm.1_Missense_Mutation_p.L119F|RETSAT_uc010fgf.2_Intron	NM_017750	NP_060220	Q6NUM9	RETST_HUMAN	all-trans-13,14-dihydroretinol saturase	180					retinol metabolic process	endoplasmic reticulum membrane|nuclear outer membrane	all-trans-retinol 13,14-reductase activity|electron carrier activity			ovary(2)	2					Vitamin A(DB00162)	TTCTCCTTGAGGCCCTGAATG	0.488													20	86					0	0	0.001216	0	0
PTCD3	55037	broad.mit.edu	37	2	86352579	86352579	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:86352579A>G	uc002sqw.2	+	11	872	c.806A>G	c.(805-807)CAC>CGC	p.H269R	PTCD3_uc010ytc.1_RNA|PTCD3_uc002sqx.1_Intron	NM_017952	NP_060422	Q96EY7	PTCD3_HUMAN	pentatricopeptide repeat domain 3 precursor	269	PPR 3.					mitochondrion	protein binding			ovary(1)	1						CTTTTCCAGCACCGAGCTTAT	0.318													11	74					0	0	0.001368	0	0
KDM3A	55818	broad.mit.edu	37	2	86693920	86693920	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:86693920C>T	uc002sri.3	+	10	1760	c.1433C>T	c.(1432-1434)GCT>GTT	p.A478V	KDM3A_uc010ytj.1_Missense_Mutation_p.A478V|KDM3A_uc010ytk.1_Missense_Mutation_p.A426V	NM_018433	NP_060903	Q9Y4C1	KDM3A_HUMAN	jumonji domain containing 1A	478					androgen receptor signaling pathway|cell differentiation|formaldehyde biosynthetic process|histone H3-K9 demethylation|hormone-mediated signaling pathway|positive regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	cytoplasm|nucleus	androgen receptor binding|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	5						TCAGCTTTAGCTTGCCGATCA	0.383													13	49					0	0	0.002450	0	0
FOXI3	344167	broad.mit.edu	37	2	88751516	88751516	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:88751516G>A	uc010ytq.1	-	2	539	c.539C>T	c.(538-540)CCC>CTC	p.P180L		NM_001135649	NP_001129121	A8MTJ6	FOXI3_HUMAN	forkhead box I3	180	Fork-head.				epidermal cell fate specification|otic placode formation|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0						CTGGTAGAAGGGGAAGCTATC	0.617													4	5					0	0	0.000248	0	0
RPIA	22934	broad.mit.edu	37	2	89036100	89036100	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:89036100C>T	uc002ste.2	+	7	686	c.645C>T	c.(643-645)ATC>ATT	p.I215I		NM_144563	NP_653164	P49247	RPIA_HUMAN	ribose 5-phosphate isomerase A	215					pentose-phosphate shunt, non-oxidative branch	cytosol	ribose-5-phosphate isomerase activity			ovary(1)	1		Acute lymphoblastic leukemia(2;0.000456)|all_hematologic(2;0.00287)				GAATCCCCATCGAGGTCATCC	0.493													11	85					0	0	0.001368	0	0
Unknown	0	broad.mit.edu	37	2	90154148	90154148	+	RNA	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:90154148C>T	uc010fhm.2	+	20		c.2613C>T								Parts of antibodies, mostly variable regions.																		CACTGGCATCCCAGCCAGGTT	0.537													16	61					0	0	0.001882	0	0
SNRNP200	23020	broad.mit.edu	37	2	96944041	96944041	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:96944041G>A	uc002svu.2	-	39	5630	c.5544C>T	c.(5542-5544)ATC>ATT	p.I1848I	SNRNP200_uc002svt.2_Silent_p.I458I|SNRNP200_uc010yuj.1_RNA	NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	1848	SEC63 2.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						CATTGGAGATGATCTCGATAA	0.507													20	66					0	0	0.001216	0	0
ITPRIPL1	150771	broad.mit.edu	37	2	96992828	96992828	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:96992828C>T	uc002svx.2	+	3	794	c.459C>T	c.(457-459)GTC>GTT	p.V153V	ITPRIPL1_uc010yuk.1_Silent_p.V145V|ITPRIPL1_uc002svy.2_Silent_p.V161V|ITPRIPL1_uc010yul.1_Silent_p.V145V	NM_001008949	NP_001008949	Q6GPH6	IPIL1_HUMAN	inositol 1,4,5-triphosphate receptor interacting	153	Cytoplasmic (Potential).					integral to membrane				central_nervous_system(2)|ovary(1)	3						TTGTCCCTGTCACCTCTTACA	0.532													16	57					0	0	0.003163	0	0
IL1F7	27178	broad.mit.edu	37	2	113675280	113675280	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:113675280G>A	uc002tij.2	+	4	376	c.334G>A	c.(334-336)GGG>AGG	p.G112R	IL1F7_uc002tik.2_Missense_Mutation_p.G91R|IL1F7_uc002til.2_Missense_Mutation_p.G72R|IL1F7_uc002tim.2_Missense_Mutation_p.G51R|IL1F7_uc002tin.2_Missense_Mutation_p.G86R	NM_014439	NP_055254	Q9NZH6	IL37_HUMAN	interleukin 1 family, member 7 isoform 1	112					immune response	cytosol|extracellular space|nucleus	cytokine activity|interleukin-1 receptor antagonist activity|interleukin-1 receptor binding				0						GATTCTCCTGGGGGTCTCTAA	0.478													36	125					0	0	0.003271	0	0
SAP130	79595	broad.mit.edu	37	2	128707888	128707888	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:128707888G>A	uc002tpp.2	-	16	2622	c.2490C>T	c.(2488-2490)GCC>GCT	p.A830A	SAP130_uc002tpn.2_Silent_p.A590A|SAP130_uc002tpo.2_Silent_p.A610A|SAP130_uc010fmd.2_Silent_p.A865A	NM_024545	NP_078821	Q9H0E3	SP130_HUMAN	Sin3A-associated protein, 130kDa isoform b	830	Pro-rich.				histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(2)|skin(2)	4	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0771)		TCCTTGGGGAGGCACCAGGTG	0.498													25	101					0	0	0.002780	0	0
PLEKHB2	55041	broad.mit.edu	37	2	131904263	131904263	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:131904263G>T	uc002tsg.3	+	8	1146	c.586G>T	c.(586-588)GAC>TAC	p.D196Y	PLEKHB2_uc002tsh.2_Intron|PLEKHB2_uc002tsj.3_Missense_Mutation_p.D195Y|PLEKHB2_uc002tsf.3_Missense_Mutation_p.D204Y|PLEKHB2_uc010zao.1_Missense_Mutation_p.D146Y|PLEKHB2_uc010zap.1_Missense_Mutation_p.E159D|PLEKHB2_uc010zaq.1_Missense_Mutation_p.E151D|PLEKHB2_uc002tsi.3_Missense_Mutation_p.D237Y	NM_001100623	NP_001094093	Q96CS7	PKHB2_HUMAN	pleckstrin homology domain containing, family B	196						membrane	protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.0828)		GCGCTATCGAGACAACGACAG	0.522													40	181					5.44703e-19	1.04554e-18	0.002222	1	0
TUBA3D	113457	broad.mit.edu	37	2	132237794	132237795	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:132237794_132237795GG>AA	uc002tsu.3	+	4	635_636	c.528_529GG>AA	c.(526-531)CAGGTC>CAAATC	p.V177I		NM_080386	NP_525125	Q13748	TBA3C_HUMAN	tubulin, alpha 3d	177					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(221;0.13)		CAGCCCCCCAGGTCTCCACAGC	0.569													36	169					0	0	0.004672	0	0
ZRANB3	84083	broad.mit.edu	37	2	135966509	135966509	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:135966509G>A	uc002tum.2	-	18	2652	c.2535C>T	c.(2533-2535)GAC>GAT	p.D845D	ZRANB3_uc002tuk.2_Silent_p.D388D|ZRANB3_uc002tul.2_Silent_p.D843D	NM_032143	NP_115519	Q5FWF4	ZRAB3_HUMAN	zinc finger, RAN-binding domain containing 3	845						intracellular	ATP binding|DNA binding|endonuclease activity|helicase activity|zinc ion binding			lung(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.135)		TCTTCACTTTGTCCATTGAGG	0.383													14	88					0	0	0.006122	0	0
THSD7B	80731	broad.mit.edu	37	2	138421083	138421083	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:138421083G>A	uc002tva.1	+	25	4502	c.4502G>A	c.(4501-4503)AGA>AAA	p.R1501K	THSD7B_uc010zbj.1_RNA	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GGGAAAAACAGACCTGTGAAT	0.353													3	14					0	0	0.004672	0	0
NEB	4703	broad.mit.edu	37	2	152544142	152544142	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:152544142C>T	uc010fnx.2	-	26	2712	c.2521G>A	c.(2521-2523)GAT>AAT	p.D841N		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	841	Nebulin 19.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		ACACTCACATCGCTGGTGTTC	0.532													9	18					0	0	0.004482	0	0
FMNL2	114793	broad.mit.edu	37	2	153399278	153399278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:153399278C>T	uc002tye.2	+	3	594	c.227C>T	c.(226-228)CCC>CTC	p.P76L		NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	76	GBD/FH3.				actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						AAGAATCCTCCCCATACATAC	0.418													15	52					0	0	0.006122	0	0
PKP4	8502	broad.mit.edu	37	2	159530490	159530490	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:159530490G>A	uc002tzv.2	+	19	3365	c.3105G>A	c.(3103-3105)CAG>CAA	p.Q1035Q	PKP4_uc002tzw.2_Silent_p.Q1035Q|PKP4_uc002tzx.2_Silent_p.Q692Q|PKP4_uc002uaa.2_Silent_p.Q887Q|uc002uab.1_Intron|PKP4_uc002uac.2_Silent_p.Q216Q|PKP4_uc002uad.2_RNA|PKP4_uc002uae.1_Silent_p.Q122Q	NM_003628	NP_003619	Q99569	PKP4_HUMAN	plakophilin 4 isoform a	1035					cell adhesion	desmosome	protein binding			ovary(5)|skin(2)	7						CCAACCAACAGATGTCACCCA	0.473										HNSCC(62;0.18)			27	104					0	0	0.002096	0	0
BAZ2B	29994	broad.mit.edu	37	2	160285724	160285724	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:160285724G>A	uc002uao.2	-	11	2594	c.2242C>T	c.(2242-2244)CCA>TCA	p.P748S	BAZ2B_uc002uap.2_Missense_Mutation_p.P746S|BAZ2B_uc002uaq.1_Missense_Mutation_p.P578S|BAZ2B_uc002uar.1_Missense_Mutation_p.P321S	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	748	MBD.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						TATTCCAATGGAATACGCAGT	0.269													4	38					0	0	0.000602	0	0
KCNH7	90134	broad.mit.edu	37	2	163250955	163250955	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:163250955C>T	uc002uch.1	-	12	2866	c.2654G>A	c.(2653-2655)GGA>GAA	p.G885E		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	885	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	ACAGTTGTCTCCTTCTGAATC	0.333													14	69					0	0	0.004990	0	0
ZAK	51776	broad.mit.edu	37	2	174131184	174131184	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:174131184C>T	uc002uhz.2	+	20	2309	c.2109C>T	c.(2107-2109)TCC>TCT	p.S703S	uc002uib.2_Intron	NM_016653	NP_057737	Q9NYL2	MLTK_HUMAN	MLK-related kinase isoform 1	703					activation of JUN kinase activity|activation of MAPKK activity|cell cycle arrest|cell death|cell differentiation|cell proliferation|DNA damage checkpoint|positive regulation of apoptosis|response to radiation	cytoplasm|nucleus	ATP binding|identical protein binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding			lung(3)|stomach(1)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.176)			GTCAGCATTCCACTCCTTCAA	0.483													12	53					0	0	0.002450	0	0
HOXD8	3234	broad.mit.edu	37	2	176996323	176996323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:176996323G>A	uc002uko.2	+	2	1474	c.856G>A	c.(856-858)GAA>AAA	p.E286K	uc002ukm.1_5'Flank|HOXD8_uc002ukn.2_Missense_Mutation_p.E102K|HOXD8_uc002ukp.2_Missense_Mutation_p.E285K	NM_019558	NP_062458	P13378	HXD8_HUMAN	homeobox D8	286					anterior/posterior axis specification, embryo	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.195)	Colorectal(32;0.0224)|READ - Rectum adenocarcinoma(9;0.0556)		AGACAGAGCCGAAGGCCTGAC	0.423													8	25					0	0	0.003080	0	0
TTN	7273	broad.mit.edu	37	2	179449219	179449219	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:179449219C>T	uc010zfg.1	-	260	57579	c.57355G>A	c.(57355-57357)GGA>AGA	p.G19119R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G12814R|TTN_uc010zfi.1_Missense_Mutation_p.G12747R|TTN_uc010zfj.1_Missense_Mutation_p.G12622R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	20046							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGGCTCCCTCCATCACTATCT	0.448													12	53					0	0	0.001368	0	0
TTN	7273	broad.mit.edu	37	2	179485685	179485685	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:179485685G>C	uc010zfg.1	-	196	38172	c.37948C>G	c.(37948-37950)CGG>GGG	p.R12650G	TTN_uc010zfh.1_Missense_Mutation_p.R6345G|TTN_uc010zfi.1_Missense_Mutation_p.R6278G|TTN_uc010zfj.1_Missense_Mutation_p.R6153G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13577							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCTTCACCCGGGTGTCCTTA	0.373													3	81					0	0	0.004672	0	0
TTN	7273	broad.mit.edu	37	2	179604270	179604270	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:179604270C>T	uc010zfh.1	-	46	13401	c.13177G>A	c.(13177-13179)GAA>AAA	p.E4393K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.E4326K|TTN_uc010zfj.1_Missense_Mutation_p.E4201K|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTGTTTTTCGTCAGAGACA	0.428													13	61					0	0	0.002450	0	0
TTN	7273	broad.mit.edu	37	2	179612512	179612512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:179612512G>A	uc002unb.2	-	46	14839	c.14615C>T	c.(14614-14616)TCC>TTC	p.S4872F	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	995							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCTAAAGTGGAGAAAGAAGC	0.368													10	46					0	0	0.000978	0	0
TTN	7273	broad.mit.edu	37	2	179664334	179664334	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:179664334G>A	uc002und.2	-	6	1019	c.794C>T	c.(793-795)TCC>TTC	p.S265F	TTN_uc010zfg.1_Missense_Mutation_p.S265F|TTN_uc010zfh.1_Missense_Mutation_p.S265F|TTN_uc010zfi.1_Missense_Mutation_p.S265F|TTN_uc010zfj.1_Missense_Mutation_p.S265F|TTN_uc002unb.2_Missense_Mutation_p.S265F			Q8WZ42	TITIN_HUMAN	Homo sapiens cDNA FLJ32040 fis, clone NTONG2000858, highly similar to H.sapiens mRNA for titin protein.	265							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGTGTTGGGGATCTTGACTT	0.562													14	74					0	0	0.004007	0	0
PMS1	5378	broad.mit.edu	37	2	190728858	190728858	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:190728858C>T	uc002urh.3	+	10	2775	c.2246C>T	c.(2245-2247)CCA>CTA	p.P749L	PMS1_uc010zgb.1_Missense_Mutation_p.P688L|PMS1_uc002urk.3_Missense_Mutation_p.P710L|PMS1_uc002uri.3_Intron|PMS1_uc010zgc.1_Missense_Mutation_p.P573L|PMS1_uc010zgd.1_Missense_Mutation_p.P573L|PMS1_uc002urj.2_Intron|PMS1_uc010fry.1_Intron|PMS1_uc010frz.2_Intron|PMS1_uc002url.2_Intron|PMS1_uc002urm.2_Intron	NM_000534	NP_000525	P54277	PMS1_HUMAN	postmeiotic segregation 1 isoform a	749					mismatch repair|reciprocal meiotic recombination	MutLalpha complex	ATP binding|ATPase activity|mismatched DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0013)|Epithelial(96;0.0263)|all cancers(119;0.0751)			TTATTAAATCCATATAGAGTA	0.383			Mis|N			colorectal|endometrial|ovarian		Direct_reversal_of_damage|MMR					31	162					0	0	0.003271	0	0
DNAH7	56171	broad.mit.edu	37	2	196746545	196746545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:196746545C>T	uc002utj.3	-	36	6036	c.5935G>A	c.(5935-5937)GGA>AGA	p.G1979R		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1979	AAA 3 (By similarity).|ATP (Potential).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTCCCAGTTCCTGTTGGTCCT	0.368													13	70					0	0	0.001855	0	0
ZDBF2	57683	broad.mit.edu	37	2	207172738	207172738	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:207172738G>A	uc002vbp.2	+	5	3736	c.3486G>A	c.(3484-3486)TTG>TTA	p.L1162L		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1162							nucleic acid binding|zinc ion binding			ovary(3)	3						AAATGAATTTGGATTCTGGTT	0.368													15	73					0	0	0.002450	0	0
MIR548F-2	100302154	broad.mit.edu	37	2	213291042	213291042	+	RNA	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:213291042G>A	hsa-mir-548f-2|MI0006375	-			c.43G>A			ERBB4_uc002veg.1_Intron|ERBB4_uc002veh.1_Intron|ERBB4_uc010zji.1_Intron|ERBB4_uc010zjj.1_Intron|ERBB4_uc010fut.1_Intron																	0						taaaagtaatgataaaaactg	0.164													12	27					0	0	0.000978	0	0
SPAG16	79582	broad.mit.edu	37	2	214878736	214878736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:214878736C>T	uc002veq.2	+	13	1554	c.1462C>T	c.(1462-1464)CCT>TCT	p.P488S	SPAG16_uc010fuz.1_Missense_Mutation_p.P339S|SPAG16_uc002ver.2_Missense_Mutation_p.P434S|SPAG16_uc010zjk.1_Missense_Mutation_p.P394S	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1	488	WD 4.				cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		TGAGTTTTTTCCTTTCTCCAA	0.363													19	84					0	0	0.001882	0	0
MREG	55686	broad.mit.edu	37	2	216810397	216810397	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:216810397G>A	uc002vfo.2	-	4	703	c.407C>T	c.(406-408)TCT>TTT	p.S136F	MREG_uc002vfq.2_RNA	NM_018000	NP_060470	Q8N565	MREG_HUMAN	whn-dependent transcript 2	136						apical plasma membrane					0		Renal(323;0.0328)		Epithelial(149;4.64e-07)|all cancers(144;5.56e-05)|LUSC - Lung squamous cell carcinoma(224;0.00832)|Lung(261;0.0111)		TGTGTTTTTAGAATCACTGAT	0.393													9	44					0	0	0.004482	0	0
CCDC108	255101	broad.mit.edu	37	2	219874736	219874736	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:219874736G>A	uc002vjl.1	-	27	4464	c.4380C>T	c.(4378-4380)CTC>CTT	p.L1460L		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1460						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGTTGAGGAAGAGCAGGCGGC	0.527													17	44					0	0	0.001216	0	0
STK11IP	114790	broad.mit.edu	37	2	220480795	220480795	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:220480795C>T	uc002vml.2	+	25	3223	c.3180C>T	c.(3178-3180)CTC>CTT	p.L1060L		NM_052902	NP_443134	Q8N1F8	S11IP_HUMAN	LKB1 interacting protein	1060					protein localization	cytoplasm	protein kinase binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(149;2.69e-07)|all cancers(144;5.91e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TTTGGGCACTCCGTGTGGTGT	0.612													9	36					0	0	0.000978	0	0
FARSB	10056	broad.mit.edu	37	2	223464667	223464667	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:223464667T>A	uc002vne.1	-	16	1633	c.1598A>T	c.(1597-1599)TAT>TTT	p.Y533F	FARSB_uc010zlq.1_Missense_Mutation_p.Y553F|FARSB_uc002vnf.1_Missense_Mutation_p.Y434F	NM_005687	NP_005678	Q9NSD9	SYFB_HUMAN	phenylalanyl-tRNA synthetase, beta subunit	533					phenylalanyl-tRNA aminoacylation	cytosol|soluble fraction	ATP binding|magnesium ion binding|phenylalanine-tRNA ligase activity|RNA binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(121;3.47e-10)|all cancers(144;1.86e-07)|LUSC - Lung squamous cell carcinoma(224;0.00871)|Lung(261;0.011)	L-Phenylalanine(DB00120)	TTTGATCACATATCCCCCCTT	0.448													22	119					0	0	0.004656	0	0
COL4A4	1286	broad.mit.edu	37	2	227915811	227915811	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:227915811C>T	uc010zlt.1	-	33	3686	c.3032G>A	c.(3031-3033)GGA>GAA	p.G1011E		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1011	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TCTGTGAAATCCAGGTGGTCC	0.547													21	92					0	0	0.001882	0	0
WDR69	164781	broad.mit.edu	37	2	228750134	228750136	+	Missense_Mutation	TNP	TCC	ATT	ATT			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:228750134_228750136TCC>ATT	uc002vpn.1	+	2	187_189	c.108_110TCC>ATT	c.(106-111)GGTCCC>GGATTC	p.P37F	WDR69_uc010zlw.1_Missense_Mutation_p.P22F|WDR69_uc002vpo.1_RNA	NM_178821	NP_849143	Q8N136	WDR69_HUMAN	WD repeat domain 69	37										breast(1)	1		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;1.22e-10)|all cancers(144;8.11e-08)|Lung(261;0.011)|LUSC - Lung squamous cell carcinoma(224;0.0148)		TTGATCTTGGTCCCAGGTAAGTA	0.345													11	51					0	0	0.004672	0	0
TRIP12	9320	broad.mit.edu	37	2	230643226	230643226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:230643226C>T	uc002vpw.1	-	35	5171	c.5062G>A	c.(5062-5064)GCT>ACT	p.A1688T	TRIP12_uc002vpx.1_Missense_Mutation_p.A1736T|TRIP12_uc002vpy.1_Missense_Mutation_p.A1418T	NM_004238	NP_004229	Q14669	TRIPC_HUMAN	thyroid hormone receptor interactor 12	1688					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	proteasome complex	thyroid hormone receptor binding|ubiquitin-protein ligase activity			ovary(4)|lung(2)|breast(1)|central_nervous_system(1)|skin(1)	9		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.126)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;4.76e-13)|all cancers(144;4.34e-10)|LUSC - Lung squamous cell carcinoma(224;0.00864)|Lung(119;0.0116)		GCGATATGAGCTGGCTTTGCT	0.433													6	114					0	0	0.001168	0	0
ARMC9	80210	broad.mit.edu	37	2	232146835	232146835	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:232146835G>A	uc002vrq.3	+	17	1727	c.1615G>A	c.(1615-1617)GCA>ACA	p.A539T	ARMC9_uc002vrp.3_Missense_Mutation_p.A539T|ARMC9_uc002vrr.1_RNA	NM_025139	NP_079415	Q7Z3E5	ARMC9_HUMAN	armadillo repeat containing 9	539							binding			ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0744)|all_hematologic(139;0.0749)|Acute lymphoblastic leukemia(138;0.167)|Medulloblastoma(418;0.184)|Lung NSC(271;0.205)		Epithelial(121;1.43e-10)|LUSC - Lung squamous cell carcinoma(224;0.017)|Lung(119;0.0189)		TCGTGAGGAAGCAAGAGCAAT	0.418													25	107					0	0	0.004656	0	0
C2orf52	151477	broad.mit.edu	37	2	232373842	232373842	+	Silent	SNP	C	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:232373842C>A	uc002vrx.1	-	3	577	c.249G>T	c.(247-249)GGG>GGT	p.G83G		NR_024079				RecName: Full=Uncharacterized protein C2orf52;												0		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;5.72e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.014)		TCATCGGGAACCCCCTACAGA	0.507													36	137					1.06647e-15	2.04461e-15	0.003755	1	0
DIS3L2	129563	broad.mit.edu	37	2	233001424	233001424	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:233001424C>T	uc010fxz.2	+	8	1221	c.945C>T	c.(943-945)GCC>GCT	p.A315A	DIS3L2_uc002vsm.3_RNA|DIS3L2_uc002vso.2_RNA	NM_152383	NP_689596	Q8IYB7	DI3L2_HUMAN	DIS3 mitotic control homolog (S.	315							exonuclease activity|ribonuclease activity|RNA binding			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(139;0.00809)|Renal(207;0.0113)|Acute lymphoblastic leukemia(138;0.0195)|all_lung(227;0.0465)|Lung NSC(271;0.136)		Epithelial(121;1.6e-13)|BRCA - Breast invasive adenocarcinoma(100;0.00104)|LUSC - Lung squamous cell carcinoma(224;0.0109)|Lung(119;0.0149)		GCAATTTTGCCCTGGGGTAGG	0.448													21	74					0	0	0.002780	0	0
CHRND	1144	broad.mit.edu	37	2	233393332	233393332	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:233393332C>T	uc002vsw.2	+	5	479	c.475C>T	c.(475-477)CCC>TCC	p.P159S	CHRND_uc010zmg.1_Missense_Mutation_p.P144S|CHRND_uc010fyc.2_Silent_p.S68S|CHRND_uc010zmh.1_Silent_p.S68S	NM_000751	NP_000742	Q07001	ACHD_HUMAN	nicotinic acetylcholine receptor delta	159	Extracellular (Potential).				muscle contraction|musculoskeletal movement|neuromuscular process|skeletal muscle tissue growth|synaptic transmission	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)|breast(1)|skin(1)	3		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.89e-16)|BRCA - Breast invasive adenocarcinoma(100;0.00078)|Lung(119;0.00579)|LUSC - Lung squamous cell carcinoma(224;0.00754)		CACCTATTTCCCCTTCGACTG	0.582													17	71					0	0	0.004990	0	0
KIF1A	547	broad.mit.edu	37	2	241737089	241737089	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:241737089G>A	uc002vzy.2	-	2	227	c.81C>T	c.(79-81)ATC>ATT	p.I27I	KIF1A_uc010fzk.2_Silent_p.I27I|KIF1A_uc002vzz.1_Silent_p.I27I	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	27	Kinesin-motor.				anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		ACATCTGAATGATGCACTTGG	0.627													5	26					0	0	0.001984	0	0
CSNK2A1	1457	broad.mit.edu	37	20	470460	470460	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:470460C>T	uc002wdw.1	-	10	1080	c.687G>A	c.(685-687)AAG>AAA	p.K229K	CSNK2A1_uc002wdx.1_Silent_p.K229K|CSNK2A1_uc002wdy.1_Silent_p.K93K	NM_177559	NP_808227	P68400	CSK21_HUMAN	casein kinase II alpha 1 subunit isoform a	229	Protein kinase.				axon guidance|Wnt receptor signaling pathway	cytosol|NuRD complex|plasma membrane|Sin3 complex	ATP binding|protein N-terminus binding|protein serine/threonine kinase activity			ovary(1)	1		Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.0969)			AAAATGGCTCCTTCCGAAAGA	0.378													7	44					0	0	0.000673	0	0
SIRPG	55423	broad.mit.edu	37	20	1616214	1616214	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:1616214G>A	uc002wfm.1	-	4	845	c.780C>T	c.(778-780)CCC>CCT	p.P260P	SIRPG_uc002wfn.1_Intron|SIRPG_uc002wfo.1_Intron|uc002wfp.1_Intron	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	260	Extracellular (Potential).|Ig-like C1-type 2.				blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						CCACCCTCATGGGCTGTTGAG	0.547													14	44					0	0	0.006122	0	0
PRNT	149830	broad.mit.edu	37	20	4713247	4713247	+	RNA	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:4713247G>A	uc002wlb.2	-	2		c.777C>T			PRNT_uc010zqp.1_RNA|PRNT_uc010zqq.1_RNA	NR_024268				Homo sapiens mRNA for putative M8 protein, isoform 2.												0						ctgaaaggatggatggaggca	0													7	30					0	0	0.003080	0	0
MCM8	84515	broad.mit.edu	37	20	5953805	5953805	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:5953805T>C	uc002wmi.2	+	12	1735	c.1358T>C	c.(1357-1359)GTT>GCT	p.V453A	MCM8_uc002wmj.2_Missense_Mutation_p.V437A|MCM8_uc002wmk.2_Missense_Mutation_p.V493A|MCM8_uc002wml.2_Missense_Mutation_p.V453A|MCM8_uc010gbp.2_Intron|MCM8_uc002wmm.2_5'UTR	NM_032485	NP_115874	Q9UJA3	MCM8_HUMAN	minichromosome maintenance complex component 8	453	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|nucleoside-triphosphatase activity			skin(1)	1						ATCCTTGTTGTTGGAGATCCA	0.408													17	60					0	0	0.001523	0	0
SNX5	27131	broad.mit.edu	37	20	17934738	17934738	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:17934738G>A	uc002wqc.2	-	4	377	c.291C>T	c.(289-291)CCC>CCT	p.P97P	SNX5_uc002wqb.2_RNA|SNX5_uc002wqd.2_Silent_p.P97P|SNX5_uc002wqe.2_5'UTR|SNX5_uc010zrt.1_Silent_p.P97P	NM_014426	NP_055241	Q9Y5X3	SNX5_HUMAN	sorting nexin 5	97	PX.				cell communication|pinocytosis|protein transport	cytoplasmic vesicle membrane|early endosome membrane|extrinsic to endosome membrane|extrinsic to internal side of plasma membrane|macropinocytic cup|phagocytic cup|ruffle	phosphatidylinositol binding			large_intestine(1)	1						CATCAAAGTCGGGCTTCGTAG	0.493													21	75					0	0	0.002299	0	0
CSRP2BP	57325	broad.mit.edu	37	20	18167944	18167944	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:18167944G>A	uc002wqj.2	+	11	2812	c.2190G>A	c.(2188-2190)AAG>AAA	p.K730K	CSRP2BP_uc002wqk.2_Silent_p.K602K|CSRP2BP_uc010zru.1_Silent_p.K601K	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	730	N-acetyltransferase.				histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						GCATGGGCAAGGACGTAACCC	0.403													31	135					0	0	0.002096	0	0
C20orf26	26074	broad.mit.edu	37	20	20140015	20140015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:20140015G>A	uc002wru.2	+	10	1029	c.953G>A	c.(952-954)GGA>GAA	p.G318E	C20orf26_uc010gcw.1_Missense_Mutation_p.G272E|C20orf26_uc010zse.1_Missense_Mutation_p.G318E|C20orf26_uc010zsf.1_Missense_Mutation_p.G318E	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	318										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		CATTTCCAGGGAAATATTGCC	0.328													15	62					0	0	0.004990	0	0
C20orf191	149934	broad.mit.edu	37	20	26094577	26094577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:26094577C>T	uc002wvj.3	-	1	101	c.46G>A	c.(46-48)GAA>AAA	p.E16K		NR_003678				SubName: Full=Putative uncharacterized protein ENSP00000323172;												0						TGACTTTGTTCTGTGCTGAAT	0.418													5	13					0	0	0.001984	0	0
ASXL1	171023	broad.mit.edu	37	20	31021578	31021579	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:31021578_31021579CC>TT	uc002wxs.2	+	11	2003_2004	c.1577_1578CC>TT	c.(1576-1578)TCC>TTT	p.S526F	ASXL1_uc010geb.2_Missense_Mutation_p.S417F	NM_015338	NP_056153	Q8IXJ9	ASXL1_HUMAN	additional sex combs like 1 isoform 1	526					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(239)|large_intestine(6)|central_nervous_system(2)|ovary(1)	248						AAGAGGAAATCCTTTGAGCAGG	0.515			F|N|Mis		MDS|CMML								28	170					0	0	0.004672	0	0
BPIL1	80341	broad.mit.edu	37	20	31606442	31606442	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:31606442G>A	uc002wyj.2	+	9	864	c.670_splice	c.e9-1	p.A224_splice		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing							extracellular region	lipid binding			skin(2)|large_intestine(1)|ovary(1)	4						CACCCCTACAGGCTGTTCTCT	0.632													28	137					0	0	0.001271	0	0
GSS	2937	broad.mit.edu	37	20	33533886	33533886	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:33533886G>A	uc002xbg.2	-	3	225	c.145C>T	c.(145-147)CCA>TCA	p.P49S	GSS_uc010zun.1_5'UTR|GSS_uc010zuo.1_Missense_Mutation_p.P49S|GSS_uc010zup.1_Intron|GSS_uc002xbh.2_RNA|GSS_uc010gez.1_5'UTR	NM_000178	NP_000169	P48637	GSHB_HUMAN	glutathione synthetase	49					nervous system development|response to oxidative stress|xenobiotic metabolic process	cytosol	ATP binding|glutathione binding|glutathione synthase activity|magnesium ion binding|protein homodimerization activity			ovary(3)	3			BRCA - Breast invasive adenocarcinoma(18;0.035)		Glutathione(DB00143)|Glycine(DB00145)|L-Cysteine(DB00151)	AGCGTGAATGGGGCATAGCTC	0.547													11	140					0	0	0.003163	0	0
KIAA0406	9675	broad.mit.edu	37	20	36640040	36640040	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:36640040C>T	uc002xhl.2	-	3	2388	c.2179G>A	c.(2179-2181)GAT>AAT	p.D727N	KIAA0406_uc002xhm.2_Missense_Mutation_p.D727N	NM_014657	NP_055472	O43156	TTI1_HUMAN	hypothetical protein LOC9675	727							binding				0		Myeloproliferative disorder(115;0.00874)				AGGTTAGCATCTGAGTTCCGC	0.468													12	35					0	0	0.002450	0	0
CHD6	84181	broad.mit.edu	37	20	40120436	40120437	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:40120436_40120437CC>TT	uc002xka.1	-	11	1515_1516	c.1337_1338GG>AA	c.(1336-1338)TGG>TAA	p.W446*	CHD6_uc002xkd.2_Nonsense_Mutation_p.W424*	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	446					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				CAAGTTTCTGCCAGGAGTCTGA	0.46													20	114					0	0	0.004672	0	0
CTSA	5476	broad.mit.edu	37	20	44523489	44523490	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:44523489_44523490GG>AA	uc002xqj.3	+	10	1371_1372	c.897_898GG>AA	c.(895-900)CAGGAT>CAAAAT	p.D300N	CTSA_uc002xqh.2_Missense_Mutation_p.D318N|CTSA_uc002xqi.2_RNA|CTSA_uc010zxi.1_Missense_Mutation_p.D301N|CTSA_uc002xqk.3_Missense_Mutation_p.D300N	NM_001127695	NP_001121167	P10619	PPGB_HUMAN	cathepsin A isoform b precursor	300					intracellular protein transport|proteolysis	endoplasmic reticulum|lysosome|nucleus	enzyme activator activity|protein binding|serine-type carboxypeptidase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				TTGTGGTCCAGGATTTGGGCAA	0.629													28	100					0	0	0.004672	0	0
SLC12A5	57468	broad.mit.edu	37	20	44671894	44671894	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:44671894C>T	uc010zxl.1	+	9	1314	c.1238C>T	c.(1237-1239)CCT>CTT	p.P413L	SLC12A5_uc010zxm.1_Intron|SLC12A5_uc002xrb.2_Missense_Mutation_p.P390L	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	413	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	ATGGACCACCCTTATGTCTTC	0.567													55	207					0	0	0.003610	0	0
EYA2	2139	broad.mit.edu	37	20	45633718	45633718	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:45633718C>T	uc002xsm.2	+	4	667	c.293C>T	c.(292-294)TCC>TTC	p.S98F	EYA2_uc010ghp.2_Missense_Mutation_p.S98F|EYA2_uc002xsn.2_Missense_Mutation_p.S103F|EYA2_uc002xso.2_Missense_Mutation_p.S98F|EYA2_uc002xsp.2_Missense_Mutation_p.S98F|EYA2_uc002xsq.2_Missense_Mutation_p.S98F	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	98					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				GGAATCCCTTCCTACAGTGAG	0.512													18	71					0	0	0.000958	0	0
ZMYND8	23613	broad.mit.edu	37	20	45850049	45850049	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:45850049C>T	uc002xta.1	-	20	3527	c.3273G>A	c.(3271-3273)TCG>TCA	p.S1091S	ZMYND8_uc010ghq.1_Silent_p.S722S|ZMYND8_uc010ghr.1_Silent_p.S993S|ZMYND8_uc002xst.1_Silent_p.S973S|ZMYND8_uc002xsu.1_Silent_p.S964S|ZMYND8_uc002xsv.1_Silent_p.S1019S|ZMYND8_uc002xsw.1_Silent_p.S797S|ZMYND8_uc002xsx.1_Silent_p.S797S|ZMYND8_uc002xsy.1_Silent_p.S1020S|ZMYND8_uc002xsz.1_Silent_p.S982S|ZMYND8_uc010zxy.1_Silent_p.S1118S|ZMYND8_uc002xtb.1_Silent_p.S1065S|ZMYND8_uc002xss.2_Silent_p.S1091S|ZMYND8_uc010zxz.1_Silent_p.S959S|ZMYND8_uc002xtc.1_Silent_p.S1065S|ZMYND8_uc002xtd.1_Silent_p.S1040S|ZMYND8_uc002xte.1_Silent_p.S1045S|ZMYND8_uc010zya.1_Silent_p.S1091S|ZMYND8_uc002xtf.1_Silent_p.S1111S|ZMYND8_uc002xsr.1_Silent_p.S190S	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b	1091	Poly-Ser.						protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			ATTGTGTGCTCGAGGAGCTCC	0.552													15	34					0	0	0.004990	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47634049	47634049	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:47634049C>T	uc002xtx.3	+	33	4623	c.4471C>T	c.(4471-4473)CCT>TCT	p.P1491S	ARFGEF2_uc010zyf.1_Missense_Mutation_p.P784S	NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	1491					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			GACATGGAGACCTGTAGGAAT	0.338													26	115					0	0	0.001512	0	0
KCNB1	3745	broad.mit.edu	37	20	47989668	47989668	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:47989668C>T	uc002xur.1	-	2	2593	c.2429G>A	c.(2428-2430)AGG>AAG	p.R810K	KCNB1_uc002xus.1_Missense_Mutation_p.R810K	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	810	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			ACAGTTCTGCCTTAAGAACTT	0.517													37	143					0	0	0.005524	0	0
SALL4	57167	broad.mit.edu	37	20	50407792	50407792	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:50407792G>A	uc002xwh.3	-	2	1331	c.1230C>T	c.(1228-1230)TTC>TTT	p.F410F	SALL4_uc010gii.2_Intron|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	410	C2H2-type 2.				transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CAGAGCACACGAAGGGTCTCT	0.557													14	44					0	0	0.001855	0	0
CBLN4	140689	broad.mit.edu	37	20	54575901	54575901	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:54575901G>A	uc002xxa.2	-	2	1079	c.294C>T	c.(292-294)ATC>ATT	p.I98I		NM_080617	NP_542184	Q9NTU7	CBLN4_HUMAN	cerebellin 4 precursor	98	C1q.					cell junction|extracellular region|synapse				ovary(3)|pancreas(1)	4			Colorectal(105;0.202)			CATTCACCAGGATCTACaaat	0.289													9	36					0	0	0.000443	0	0
CASS4	57091	broad.mit.edu	37	20	55033749	55033750	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:55033749_55033750GG>AA	uc002xxp.2	+	7	2532_2533	c.2307_2308GG>AA	c.(2305-2310)GCGGAG>GCAAAG	p.E770K	CASS4_uc002xxr.2_Missense_Mutation_p.E770K|CASS4_uc010zze.1_Missense_Mutation_p.E716K|CASS4_uc010gio.2_Missense_Mutation_p.E333K	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	770					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						ACCTCCAGGCGGAGGCTGAGAA	0.629													5	13					0	0	0.004672	0	0
ZNF831	128611	broad.mit.edu	37	20	57768463	57768463	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr20:57768463G>A	uc002yan.2	+	1	2389	c.2389G>A	c.(2389-2391)GAG>AAG	p.E797K		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	797						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GGATGTTCAGGAGACCTGCCT	0.637													6	24					0	0	0.001984	0	0
TPTE	7179	broad.mit.edu	37	21	10934997	10934997	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr21:10934997C>T	uc002yip.1	-	15	1164	c.796G>A	c.(796-798)GAA>AAA	p.E266K	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.E248K|TPTE_uc002yir.1_Missense_Mutation_p.E228K|TPTE_uc010gkv.1_Missense_Mutation_p.E128K	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	266	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CGCACAACTTCCTAAAAAAGA	0.333													6	140					0	0	0.001168	0	0
NRIP1	8204	broad.mit.edu	37	21	16340074	16340074	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr21:16340074A>G	uc002yjx.2	-	4	1038	c.440T>C	c.(439-441)GTT>GCT	p.V147A		NM_003489	NP_003480	P48552	NRIP1_HUMAN	nuclear receptor interacting protein 1	147	Repression domain 1.				androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		androgen receptor binding|estrogen receptor binding|glucocorticoid receptor binding|transcription coactivator activity|transcription corepressor activity				0				Epithelial(23;1.19e-05)|all cancers(11;4.64e-05)|COAD - Colon adenocarcinoma(22;0.000232)|Colorectal(24;0.0006)|OV - Ovarian serous cystadenocarcinoma(11;0.00418)|Lung(58;0.199)|LUSC - Lung squamous cell carcinoma(23;0.24)		TGACAGAGCAACAGTCTGCAG	0.468													11	46					0	0	0.000673	0	0
CRYZL1	9946	broad.mit.edu	37	21	34975741	34975741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr21:34975741C>T	uc011adw.1	-	7	614	c.434G>A	c.(433-435)GGA>GAA	p.G145E	DONSON_uc002ysn.1_Intron|CRYZL1_uc002ysr.1_Missense_Mutation_p.G169E|CRYZL1_uc002yss.1_RNA|CRYZL1_uc002yst.1_RNA	NM_145858	NP_665857	O95825	QORL1_HUMAN	crystallin, zeta-like 1	145					quinone cofactor metabolic process	cytosol	NADP binding|NADPH:quinone reductase activity|zinc ion binding				0						CACTGATTTTCCAGGAGAGAG	0.433													17	87					0	0	0.006122	0	0
SIM2	6493	broad.mit.edu	37	21	38103419	38103419	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr21:38103419G>A	uc002yvr.2	+	7	873	c.817G>A	c.(817-819)GAC>AAC	p.D273N	SIM2_uc002yvq.2_Missense_Mutation_p.D273N	NM_005069	NP_005060	Q14190	SIM2_HUMAN	single-minded homolog 2 long isoform	273	PAS 2.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(1)	1						GCACGGCTGCGACGTGTTCCA	0.652													17	46					0	0	0.004990	0	0
LCA5L	150082	broad.mit.edu	37	21	40794924	40794924	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr21:40794924T>C	uc002yxu.2	-	5	1128	c.815A>G	c.(814-816)GAC>GGC	p.D272G	LCA5L_uc002yxv.2_Missense_Mutation_p.D272G|LCA5L_uc002yxw.1_Missense_Mutation_p.D272G|LCA5L_uc002yxx.1_Missense_Mutation_p.D134G|LCA5L_uc002yxy.2_RNA	NM_152505	NP_689718	O95447	LCA5L_HUMAN	Leber congenital amaurosis 5-like	272											0		Prostate(19;1.2e-06)				GTCATTTGCGTCCATTTTTGT	0.378													15	81					0	0	0.001216	0	0
DSCAM	1826	broad.mit.edu	37	21	41424008	41424008	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr21:41424008C>T	uc002yyq.1	-	30	5514	c.5062G>A	c.(5062-5064)GAT>AAT	p.D1688N	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1688	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AAGTCAGCATCCGTCAACAGA	0.537													16	58					0	0	0.003163	0	0
BACE2	25825	broad.mit.edu	37	21	42615331	42615331	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr21:42615331A>G	uc002yyw.2	+	5	1239	c.776A>G	c.(775-777)TAT>TGT	p.Y259C	BACE2_uc002yyx.2_Missense_Mutation_p.Y259C|BACE2_uc002yyy.2_Missense_Mutation_p.Y259C|BACE2_uc010goo.2_5'Flank	NM_012105	NP_036237	Q9Y5Z0	BACE2_HUMAN	beta-site APP-cleaving enzyme 2 isoform A	259	Extracellular (Potential).				membrane protein ectodomain proteolysis|negative regulation of amyloid precursor protein biosynthetic process|peptide hormone processing	cell surface|endoplasmic reticulum|endosome|Golgi apparatus|integral to membrane	aspartic-type endopeptidase activity			ovary(2)	2		Prostate(19;1.57e-07)|all_epithelial(19;0.0251)				CCAAGTTTGTATAAAGGAGAC	0.393													15	43					0	0	0.006122	0	0
C2CD2	25966	broad.mit.edu	37	21	43321859	43321859	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr21:43321859C>T	uc002yzw.2	-	12	1675	c.1433_splice	c.e12-1	p.E478_splice	C2CD2_uc002yzs.2_Splice_Site|C2CD2_uc002yzt.2_Splice_Site_p.E94_splice|C2CD2_uc002yzu.2_Splice_Site_p.E310_splice|C2CD2_uc002yzv.2_Splice_Site_p.E323_splice|C2CD2_uc002yzx.1_Intron	NM_015500	NP_056315	Q9Y426	CU025_HUMAN	C2 calcium-dependent domain containing 2 isoform							cytosol|extracellular region|nucleus				ovary(1)	1						ACCAACAATTCTACCAGAAGG	0.333													5	21					0	0	0.000602	0	0
UMODL1	89766	broad.mit.edu	37	21	43547937	43547937	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr21:43547937A>G	uc002zaf.1	+	20	3686	c.3686A>G	c.(3685-3687)AAA>AGA	p.K1229R	UMODL1_uc002zad.1_Missense_Mutation_p.K1157R|UMODL1_uc002zae.1_Missense_Mutation_p.K1285R|UMODL1_uc002zag.1_Missense_Mutation_p.K1357R|UMODL1_uc002zal.1_Missense_Mutation_p.K179R|UMODL1_uc010gpa.1_RNA	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	1229	Extracellular (Potential).|ZP.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						GCCACGTGCAAAATCGTAAGT	0.473													9	67					0	0	0.004482	0	0
AGPAT3	56894	broad.mit.edu	37	21	45400909	45400909	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr21:45400909C>T	uc002zdv.2	+	9	1105	c.883C>T	c.(883-885)CCA>TCA	p.P295S	AGPAT3_uc002zdw.2_Missense_Mutation_p.P295S|AGPAT3_uc002zdx.2_Missense_Mutation_p.P382S|AGPAT3_uc002zdy.2_Missense_Mutation_p.P233S	NM_020132	NP_064517	Q9NRZ7	PLCC_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 3	295	Lumenal (Potential).				phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|plasma membrane	1-acylglycerol-3-phosphate O-acyltransferase activity				0				STAD - Stomach adenocarcinoma(101;0.18)|Colorectal(79;0.24)		GGGCATGTTTCCAGGGGAGCA	0.507													21	93					0	0	0.001216	0	0
DNMT3L	29947	broad.mit.edu	37	21	45666423	45666423	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr21:45666423C>T	uc002zeg.1	-	12	1502	c.1018G>A	c.(1018-1020)GAA>AAA	p.E340K	DNMT3L_uc002zeh.1_Missense_Mutation_p.E341K	NM_175867	NP_787063	Q9UJW3	DNM3L_HUMAN	cytosine-5-methyltransferase 3-like protein	340					DNA methylation|negative regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|spermatogenesis	cytosol	enzyme activator activity|enzyme binding|metal ion binding	p.E341delE(1)		skin(2)	2				Colorectal(79;0.0165)|READ - Rectum adenocarcinoma(84;0.0781)		AATTCTTCTTCCGAAACCAGA	0.617													7	27					0	0	0.003080	0	0
KRTAP10-9	386676	broad.mit.edu	37	21	46047215	46047215	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr21:46047215C>T	uc002zfp.3	+	1	176	c.127C>T	c.(127-129)CTG>TTG	p.L43L	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198690	NP_941963	P60411	KR109_HUMAN	keratin associated protein 10-9	43	25 X 5 AA repeats of C-C-X(3).					keratin filament					0						GGCCCCCTGCCTGACCCTGGT	0.692													12	59					0	0	0.001855	0	0
COL18A1	80781	broad.mit.edu	37	21	46900753	46900753	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr21:46900753C>T	uc011afs.1	+	12	2858	c.2837C>T	c.(2836-2838)CCC>CTC	p.P946L	COL18A1_uc002zhg.2_Missense_Mutation_p.P531L|COL18A1_uc002zhi.2_Missense_Mutation_p.P711L	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	946	Triple-helical region 3 (COL3).				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		GAGGGTCCCCCCGGGTTTCCT	0.711													5	16					0	0	0.001168	0	0
POTEH	23784	broad.mit.edu	37	22	16267002	16267002	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr22:16267002A>T	uc010gqp.2	-	9	1499	c.1447T>A	c.(1447-1449)TTA>ATA	p.L483I	POTEH_uc002zlg.1_RNA|POTEH_uc002zlh.1_Missense_Mutation_p.L202I|POTEH_uc002zlj.1_Missense_Mutation_p.L318I	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	483										skin(1)	1						GGTGGAATTAATCCATCATCA	0.433													19	354					0	0	0.002780	0	0
CCT8L2	150160	broad.mit.edu	37	22	17072523	17072523	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr22:17072523C>T	uc002zlp.1	-	1	1178	c.918G>A	c.(916-918)CTG>CTA	p.L306L		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	306					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				ACTTGTCCGCCAGTGTGAGGG	0.527													41	245					0	0	0.003610	0	0
PIWIL3	440822	broad.mit.edu	37	22	25115717	25115717	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr22:25115717G>C	uc003abd.1	-	20	2947	c.2530C>G	c.(2530-2532)CCA>GCA	p.P844A	PIWIL3_uc011ajx.1_Missense_Mutation_p.P726A|PIWIL3_uc011ajy.1_Missense_Mutation_p.P726A|PIWIL3_uc010gut.1_Missense_Mutation_p.P835A	NM_001008496	NP_001008496	Q7Z3Z3	PIWL3_HUMAN	piwi-like 3	844	Piwi.				cell differentiation|gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatogenesis	cytoplasm	RNA binding			ovary(3)|central_nervous_system(1)	4						GTACTTACTGGCAAATTATAA	0.338													18	49					0	0	0.000958	0	0
SEZ6L	23544	broad.mit.edu	37	22	26706742	26706742	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr22:26706742C>T	uc003acb.2	+	7	1777	c.1621C>T	c.(1621-1623)CGC>TGC	p.R541C	SEZ6L_uc003acc.2_Missense_Mutation_p.R541C|SEZ6L_uc011akc.1_Missense_Mutation_p.R541C|SEZ6L_uc003acd.2_Missense_Mutation_p.R541C|SEZ6L_uc011akd.1_Missense_Mutation_p.R541C|SEZ6L_uc003ace.2_Missense_Mutation_p.R541C|SEZ6L_uc003acf.1_Missense_Mutation_p.R314C|SEZ6L_uc010gvc.1_Missense_Mutation_p.R314C	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	541	CUB 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CAACACCATCCGCATCGAGTT	0.592													16	129					0	0	0.006122	0	0
SEZ6L	23544	broad.mit.edu	37	22	26707732	26707732	+	Splice_Site	SNP	A	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr22:26707732A>G	uc003acb.2	+	8	1838	c.1682_splice	c.e8-2	p.A561_splice	SEZ6L_uc003acc.2_Splice_Site_p.A561_splice|SEZ6L_uc011akc.1_Splice_Site_p.A561_splice|SEZ6L_uc003acd.2_Splice_Site_p.A561_splice|SEZ6L_uc011akd.1_Splice_Site_p.A561_splice|SEZ6L_uc003ace.2_Splice_Site_p.A561_splice|SEZ6L_uc003acf.1_Splice_Site_p.A334_splice|SEZ6L_uc010gvc.1_Splice_Site_p.A334_splice	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like							endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						TCCCTTCCTCAGCGTTTGAGA	0.502													87	163					0	0	0.003610	0	0
HPS4	89781	broad.mit.edu	37	22	26860503	26860503	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr22:26860503C>T	uc003acl.2	-	11	1752	c.1093G>A	c.(1093-1095)GAA>AAA	p.E365K	HPS4_uc003aci.2_Missense_Mutation_p.E360K|HPS4_uc003acj.2_Missense_Mutation_p.E229K|HPS4_uc003ack.2_Missense_Mutation_p.E156K|HPS4_uc003acn.2_Missense_Mutation_p.E211K|HPS4_uc010gvd.1_Missense_Mutation_p.E383K|HPS4_uc003ach.2_Missense_Mutation_p.E100K	NM_022081	NP_071364	Q9NQG7	HPS4_HUMAN	light ear protein isoform a	365					lysosome organization|positive regulation of eye pigmentation|protein stabilization|protein targeting	lysosome|melanosome|membrane fraction|platelet dense granule	protein homodimerization activity				0						TCGAGTTCTTCTTGGAGAAAG	0.537									Hermansky-Pudlak_syndrome				14	89					0	0	0.002450	0	0
MN1	4330	broad.mit.edu	37	22	28193708	28193708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr22:28193708C>T	uc003adj.2	-	1	3779	c.2824G>A	c.(2824-2826)GGA>AGA	p.G942R		NM_002430	NP_002421	Q10571	MN1_HUMAN	meningioma  1	942							binding			central_nervous_system(3)|lung(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	10						CGACCCCGTCCCCGGCCGCCG	0.692			T	ETV6	AML|meningioma								4	7					0	0	0.000248	0	0
NIPSNAP1	8508	broad.mit.edu	37	22	29957588	29957588	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr22:29957588C>T	uc003afx.3	-	6	559	c.486G>A	c.(484-486)AGG>AGA	p.R162R	NIPSNAP1_uc011akp.1_Silent_p.R142R	NM_003634	NP_003625	Q9BPW8	NIPS1_HUMAN	nipsnap homolog 1	162								p.?(1)		skin(1)	1						GCTGGTTTCTCCTGGACAGCA	0.567													33	72					0	0	0.003271	0	0
MTMR3	8897	broad.mit.edu	37	22	30414048	30414048	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr22:30414048C>T	uc003agv.3	+	16	2135	c.1807C>T	c.(1807-1809)CCC>TCC	p.P603S	MTMR3_uc003agu.3_Missense_Mutation_p.P603S|MTMR3_uc003agw.3_Missense_Mutation_p.P603S	NM_021090	NP_066576	Q13615	MTMR3_HUMAN	myotubularin-related protein 3 isoform c	603					phosphatidylinositol dephosphorylation	cytoplasm|membrane|membrane fraction|nucleus	metal ion binding|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			breast(3)|ovary(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(5;0.00204)|Epithelial(10;0.06)|all cancers(5;0.107)			CCCTGATGATCCCCCCCTGAG	0.627													15	35					0	0	0.004007	0	0
OSBP2	23762	broad.mit.edu	37	22	31286814	31286814	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr22:31286814G>A	uc003aiy.1	+	8	1827	c.1723G>A	c.(1723-1725)GAG>AAG	p.E575K	OSBP2_uc011ala.1_Missense_Mutation_p.E409K|OSBP2_uc010gwc.1_Missense_Mutation_p.E402K|OSBP2_uc011alb.1_Missense_Mutation_p.E526K|OSBP2_uc003aiz.1_Missense_Mutation_p.E574K|OSBP2_uc003aja.1_Missense_Mutation_p.E208K|OSBP2_uc011alc.1_Missense_Mutation_p.E317K|OSBP2_uc003ajb.2_Missense_Mutation_p.E120K|OSBP2_uc011ald.1_Missense_Mutation_p.E119K|OSBP2_uc010gwd.1_Missense_Mutation_p.E120K	NM_030758	NP_110385	Q969R2	OSBP2_HUMAN	oxysterol binding protein 2 isoform a	575					lipid transport	membrane	lipid binding			breast(1)|skin(1)	2						CAGCTCAGTGGAGCAGATGTG	0.612											OREG0026467	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	29					0	0	0.006122	0	0
APOL3	80833	broad.mit.edu	37	22	36537945	36537945	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr22:36537945C>T	uc003aot.2	-	3	550	c.512G>A	c.(511-513)CGT>CAT	p.R171H	APOL3_uc003aoq.2_Missense_Mutation_p.R100H|APOL3_uc003aor.2_Missense_Mutation_p.R100H|APOL3_uc003aos.2_Missense_Mutation_p.R100H|APOL3_uc003aou.2_Translation_Start_Site|APOL3_uc003aov.2_Translation_Start_Site	NM_145640	NP_663615	O95236	APOL3_HUMAN	apolipoprotein L3 isoform 1	171					inflammatory response|lipoprotein metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|extracellular region	lipid binding|lipid transporter activity|signal transducer activity				0						TGCAAGGGCACGAAGCTTTTC	0.498													31	74					0	0	0.002836	0	0
IL2RB	3560	broad.mit.edu	37	22	37533707	37533707	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr22:37533707C>T	uc003aqv.1	-	6	588	c.457G>A	c.(457-459)GAA>AAA	p.E153K		NM_000878	NP_000869	P14784	IL2RB_HUMAN	interleukin 2 receptor beta precursor	153	Extracellular (Potential).|Fibronectin type-III.				interspecies interaction between organisms|positive regulation of survival gene product expression|protein complex assembly	external side of plasma membrane|integral to plasma membrane	interleukin-2 receptor activity				0					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	TGGGAGATTTCCCAGCTTATG	0.572													17	79					0	0	0.004990	0	0
ELFN2	114794	broad.mit.edu	37	22	37771307	37771307	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr22:37771307C>T	uc003asq.3	-	3	1054	c.268G>A	c.(268-270)GAG>AAG	p.E90K		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	90	LRR 2.|Extracellular (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					TAGGAGATCTCGTTCTTGGTG	0.597													29	64					0	0	0.001061	0	0
SH3BP1	23616	broad.mit.edu	37	22	38041403	38041403	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr22:38041403C>T	uc003ati.2	+	10	921	c.810C>T	c.(808-810)TTC>TTT	p.F270F	SH3BP1_uc003atg.1_RNA|SH3BP1_uc011anl.1_Silent_p.F270F|SH3BP1_uc003ath.1_Silent_p.F270F|SH3BP1_uc003atj.1_Silent_p.F206F|SH3BP1_uc003atk.1_Silent_p.F184F|uc003atl.1_Intron	NM_018957	NP_061830	Q9Y3L3	3BP1_HUMAN	SH3-domain binding protein 1	270					signal transduction	cytoplasm	GTPase activator activity|SH3 domain binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CCACCCACTTCCCCAGGGTGT	0.652													12	95					0	0	0.003163	0	0
PLA2G6	8398	broad.mit.edu	37	22	38541618	38541618	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr22:38541618G>A	uc003auy.1	-	3	388	c.252C>T	c.(250-252)TTC>TTT	p.F84F	PLA2G6_uc003auz.1_Silent_p.F84F|PLA2G6_uc003ava.1_Silent_p.F84F|PLA2G6_uc003avb.2_Silent_p.F84F|PLA2G6_uc010gxk.1_Intron|PLA2G6_uc011ano.1_Silent_p.F84F	NM_003560	NP_003551	O60733	PA2G6_HUMAN	phospholipase A2, group VI isoform a	84					cardiolipin biosynthetic process|cell death|lipid catabolic process	centrosome|membrane				ovary(1)	1	Melanoma(58;0.045)				Quinacrine(DB01103)	AATACTGATGGAAATTCACTA	0.577													9	50					0	0	0.000978	0	0
ARFGAP3	26286	broad.mit.edu	37	22	43231471	43231471	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr22:43231471G>A	uc003bdd.2	-	4	510	c.290C>T	c.(289-291)TCC>TTC	p.S97F	ARFGAP3_uc010gzf.2_Intron|ARFGAP3_uc011apu.1_Intron	NM_014570	NP_055385	Q9NP61	ARFG3_HUMAN	ADP-ribosylation factor GTPase activating	97	Arf-GAP.				intracellular protein transport|protein secretion|regulation of ARF GTPase activity|vesicle-mediated transport	cytosol|Golgi membrane	ARF GTPase activator activity|protein transporter activity|zinc ion binding			breast(1)	1						GTCATTGGTGGAACACCCATG	0.373													20	59					0	0	0.001882	0	0
SULT4A1	25830	broad.mit.edu	37	22	44221993	44221993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr22:44221993C>T	uc003bee.1	-	7	859	c.743G>A	c.(742-744)GGA>GAA	p.G248E	SULT4A1_uc003bed.1_Missense_Mutation_p.G169E|SULT4A1_uc003bef.1_RNA|SULT4A1_uc011aqb.1_Missense_Mutation_p.G135E	NM_014351	NP_055166	Q9BR01	ST4A1_HUMAN	sulfotransferase family 4A, member 1	248	PAPS (Potential).				3'-phosphoadenosine 5'-phosphosulfate metabolic process|steroid metabolic process|xenobiotic metabolic process	cytosol	sulfotransferase activity				0		Ovarian(80;0.024)|all_neural(38;0.0416)		Colorectal(1;0.00242)|READ - Rectum adenocarcinoma(1;0.0419)		CCCAACTCTTCCTGAAACGCA	0.473													14	64					0	0	0.003163	0	0
PLXNB2	23654	broad.mit.edu	37	22	50720717	50720718	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr22:50720717_50720718CC>TT	uc003bkv.3	-	19	3118_3119	c.3012_3013GG>AA	c.(3010-3015)ACGGGT>ACAAGT	p.G1005S	PLXNB2_uc003bkt.1_5'Flank|PLXNB2_uc003bku.1_5'UTR	NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	1005	IPT/TIG 3.|Extracellular (Potential).				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		AAGCCCTGACCCGTGACGTTGA	0.698													16	67					0	0	0.004672	0	0
ITPR1	3708	broad.mit.edu	37	3	4810359	4810359	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:4810359G>A	uc003bqa.2	+	43	6094	c.5746G>A	c.(5746-5748)GAC>AAC	p.D1916N	ITPR1_uc010hca.1_Missense_Mutation_p.D1901N|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Missense_Mutation_p.D886N	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	1964	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		GGCCAAGGACGACCTGGAGAT	0.612													28	101					0	0	0.003755	0	0
LHFPL4	375323	broad.mit.edu	37	3	9547761	9547761	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:9547761A>T	uc003bry.2	-	3	819	c.533T>A	c.(532-534)ATC>AAC	p.I178N		NM_198560	NP_940962	Q7Z7J7	LHPL4_HUMAN	lipoma HMGIC fusion partner-like 4	178	Helical; (Potential).					integral to membrane				ovary(2)|skin(1)	3	Medulloblastoma(99;0.227)					GATGGCCAGGATGTATGCCCA	0.612													9	58					0	0	0.000673	0	0
FGD5	152273	broad.mit.edu	37	3	14964555	14964555	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:14964555C>T	uc003bzc.2	+	16	3920	c.3810C>T	c.(3808-3810)ATC>ATT	p.I1270I	FGD5_uc011avk.1_Silent_p.I1270I|FGD5_uc003bzd.2_Silent_p.I348I	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	1270	FYVE-type.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						GCCTGCAGATCGTGTGCCGGA	0.607													9	82					0	0	0.000673	0	0
SH3BP5	9467	broad.mit.edu	37	3	15300546	15300546	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:15300546C>T	uc003bzp.1	-	7	870	c.681G>A	c.(679-681)AAG>AAA	p.K227K	SH3BP5_uc010hem.1_Intron|SH3BP5_uc003bzq.1_Silent_p.K70K|SH3BP5_uc003bzr.1_Silent_p.K70K|uc003bzo.1_RNA	NM_004844	NP_004835	O60239	3BP5_HUMAN	SH3-domain binding protein 5 (BTK-associated)	227					intracellular signal transduction	mitochondrion	protein kinase inhibitor activity|SH3 domain binding				0						CATCCACAGTCTTTTTCAGTT	0.488													5	26					0	0	0.001168	0	0
ARPP21	10777	broad.mit.edu	37	3	35780906	35780906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:35780906C>T	uc003cgb.2	+	17	2006	c.1742C>T	c.(1741-1743)TCC>TTC	p.S581F	ARPP21_uc003cga.2_Missense_Mutation_p.S562F|ARPP21_uc011axy.1_Missense_Mutation_p.S582F|ARPP21_uc003cgf.2_Missense_Mutation_p.S417F|ARPP21_uc003cgg.2_Missense_Mutation_p.S104F	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	581	Gln-rich.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						TACCCATCCTCCCTTATGCCA	0.602													14	47					0	0	0.001855	0	0
SCN5A	6331	broad.mit.edu	37	3	38622716	38622716	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:38622716C>T	uc003cio.2	-	17	3128	c.2934G>A	c.(2932-2934)TGG>TGA	p.W978*	SCN5A_uc003cin.2_Nonsense_Mutation_p.W978*|SCN5A_uc003cil.3_Nonsense_Mutation_p.W978*|SCN5A_uc010hhi.2_Nonsense_Mutation_p.W978*|SCN5A_uc010hhk.2_Nonsense_Mutation_p.W978*|SCN5A_uc011ayr.1_Nonsense_Mutation_p.W978*|SCN5A_uc010hhj.1_Nonsense_Mutation_p.W589*	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	978					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	AGCAGAAATCCCAGGTGGTCC	0.662													5	9					0	0	0.000602	0	0
XIRP1	165904	broad.mit.edu	37	3	39226948	39226948	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:39226948G>A	uc003cjk.1	-	2	4210	c.3989C>T	c.(3988-3990)CCT>CTT	p.P1330L	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_Missense_Mutation_p.P13L	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1330	Pro-rich.						actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		TAGGTGTGCAGGTTTAGGGGG	0.602													24	73					0	0	0.003330	0	0
EIF1B	10289	broad.mit.edu	37	3	40352421	40352422	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:40352421_40352422CC>TT	uc003ckc.2	+	2	329_330	c.69_70CC>TT	c.(67-72)CTCCCG>CTTTCG	p.P24S	uc003ckb.2_5'Flank	NM_005875	NP_005866	O60739	EIF1B_HUMAN	translation factor sui1 homolog	24					regulation of translational initiation		protein binding|translation initiation factor activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0509)|Kidney(284;0.064)		ACGACTTACTCCCGGCAGGGAC	0.381													5	39					0	0	0.004672	0	0
CXCR6	10663	broad.mit.edu	37	3	45988910	45988911	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:45988910_45988911GG>AA	uc003cpc.1	+	2	1018_1019	c.937_938GG>AA	c.(937-939)GGG>AAG	p.G313K	FYCO1_uc003cpb.3_Intron|FYCO1_uc011bal.1_Intron|CXCR6_uc010hix.1_Missense_Mutation_p.G313K	NM_006564	NP_006555	O00574	CXCR6_HUMAN	G protein-coupled receptor TYMSTR	313	Cytoplasmic (Potential).				viral genome replication	integral to plasma membrane	coreceptor activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		CCCTTACCTTGGGGTCTCACAT	0.49													19	63					0	0	0.004672	0	0
LRRC2	79442	broad.mit.edu	37	3	46586695	46586695	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:46586695G>A	uc010hji.2	-	3	538	c.174C>T	c.(172-174)ATC>ATT	p.I58I	LRRC2_uc003cpu.3_Silent_p.I58I	NM_024512	NP_078788	Q9BYS8	LRRC2_HUMAN	leucine rich repeat containing 2	58										ovary(1)	1		Ovarian(412;0.0563)		OV - Ovarian serous cystadenocarcinoma(275;6.37e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00133)|KIRC - Kidney renal clear cell carcinoma(197;0.0214)|Kidney(197;0.0254)		CAGCCTGGGGGATGCCCTTCC	0.532													22	85					0	0	0.001882	0	0
SMARCC1	6599	broad.mit.edu	37	3	47629743	47629743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:47629743G>A	uc003crq.2	-	28	3392	c.3274C>T	c.(3274-3276)CCT>TCT	p.P1092S	SMARCC1_uc011bbc.1_RNA|SMARCC1_uc011bbd.1_Missense_Mutation_p.P983S	NM_003074	NP_003065	Q92922	SMRC1_HUMAN	SWI/SNF-related matrix-associated	1092	Pro-rich.				chromatin remodeling|nervous system development|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex|WINAC complex	DNA binding|protein N-terminus binding|transcription coactivator activity			skin(2)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(193;7.47e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)		GGAGGCGGAGGGACCCCATCT	0.602													11	53					0	0	0.001855	0	0
CELSR3	1951	broad.mit.edu	37	3	48692803	48692803	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:48692803G>A	uc003cul.2	-	5	5047	c.4766C>T	c.(4765-4767)CCC>CTC	p.P1589L	CELSR3_uc003cuf.1_Missense_Mutation_p.P1659L	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	1589	Extracellular (Potential).|Laminin G-like 1.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TGGAACTGTGGGGCTGACCAC	0.572													9	52					0	0	0.001368	0	0
CELSR3	1951	broad.mit.edu	37	3	48696988	48696988	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:48696988C>T	uc003cul.2	-	1	3361	c.3080G>A	c.(3079-3081)CGG>CAG	p.R1027Q	CELSR3_uc003cuf.1_Missense_Mutation_p.R1097Q	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	1027	Extracellular (Potential).|Cadherin 7.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TACTGCCTCCCGGTCTAGCCG	0.552													20	79					0	0	0.001216	0	0
CELSR3	1951	broad.mit.edu	37	3	48697368	48697368	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:48697368G>A	uc003cul.2	-	1	2981	c.2700C>T	c.(2698-2700)AAC>AAT	p.N900N	CELSR3_uc003cuf.1_Silent_p.N970N	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	900	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		ACTGGGGCAGGTTGTCCTCCA	0.388													15	26					0	0	0.002450	0	0
GPR62	118442	broad.mit.edu	37	3	51990248	51990248	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:51990248G>A	uc003dca.3	+	1	919	c.580G>A	c.(580-582)GGC>AGC	p.G194S		NM_080865	NP_543141	Q9BZJ7	GPR62_HUMAN	G protein-coupled receptor 62	194	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000534)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		CGCCTACGGCGGCATCTTCGT	0.741													4	12					0	0	0.000602	0	0
DNAH1	25981	broad.mit.edu	37	3	52378581	52378581	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:52378581T>A	uc011bef.1	+	9	1623	c.1362T>A	c.(1360-1362)TTT>TTA	p.F454L	DNAH1_uc003ddt.1_Missense_Mutation_p.F454L	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	454	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		AGATCAACTTTGACCACGTTG	0.567													5	40					0	0	0.000602	0	0
NEK4	6787	broad.mit.edu	37	3	52780208	52780208	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:52780208G>A	uc003dfq.3	-	10	1885	c.1696C>T	c.(1696-1698)CGA>TGA	p.R566*	NEK4_uc011bej.1_Nonsense_Mutation_p.R477*|NEK4_uc003dfr.2_Nonsense_Mutation_p.R520*	NM_003157	NP_003148	P51957	NEK4_HUMAN	NIMA-related kinase 4	566					cell division|mitosis	nucleus	ATP binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(1)	1				BRCA - Breast invasive adenocarcinoma(193;7.44e-05)|Kidney(197;0.000711)|KIRC - Kidney renal clear cell carcinoma(197;0.00086)|OV - Ovarian serous cystadenocarcinoma(275;0.0513)		GGCAAAAATCGAGGAGGCGAC	0.413													17	67					0	0	0.004007	0	0
LRTM1	57408	broad.mit.edu	37	3	54952651	54952651	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:54952651G>A	uc003dhl.2	-	3	1007	c.873C>T	c.(871-873)ATC>ATT	p.I291I	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	291	Helical; (Potential).					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		CAACGCCAGTGATGATGACAG	0.577													21	77					0	0	0.003330	0	0
LRTM1	57408	broad.mit.edu	37	3	54959205	54959205	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:54959205G>A	uc003dhl.2	-	2	179	c.45C>T	c.(43-45)CTC>CTT	p.L15L	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	15						integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		ATACCACCTGGAGCAGGACAA	0.473													7	53					0	0	0.003080	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64641303	64641303	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:64641303G>A	uc003dmg.2	-	6	1150	c.1118C>T	c.(1117-1119)TCG>TTG	p.S373L	ADAMTS9_uc011bfo.1_Missense_Mutation_p.S345L|ADAMTS9_uc003dmh.1_Missense_Mutation_p.S202L|ADAMTS9_uc003dmk.1_Missense_Mutation_p.S373L	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	373	Peptidase M12B.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		ACTGTTCTTCGAATGCTGCCA	0.378													84	383					0	0	0.003610	0	0
MAGI1	9223	broad.mit.edu	37	3	65479297	65479297	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:65479297C>T	uc003dmn.2	-	3	966	c.440G>A	c.(439-441)CGA>CAA	p.R147Q	MAGI1_uc003dmm.2_Missense_Mutation_p.R147Q|MAGI1_uc003dmo.2_Missense_Mutation_p.R147Q|MAGI1_uc003dmp.2_Missense_Mutation_p.R147Q|MAGI1_uc010hny.2_Missense_Mutation_p.R31Q|MAGI1_uc003dmr.2_Missense_Mutation_p.R147Q	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	147	Guanylate kinase-like.				cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		TCTGGGAGATCGGGTTGTGCC	0.463													13	40					0	0	0.001368	0	0
MIR1324	100302212	broad.mit.edu	37	3	75680001	75680001	+	RNA	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:75680001G>A	hsa-mir-1324|MI0006657	+			c.88G>A																				0						CACTTTCCTGGAGGCTCCATG	0.527													8	89					0	0	0.000978	0	0
VGLL3	389136	broad.mit.edu	37	3	87039870	87039870	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:87039870A>T	uc003dqn.2	-	1	388	c.24T>A	c.(22-24)TAT>TAA	p.Y8*		NM_016206	NP_057290	A8MV65	VGLL3_HUMAN	colon carcinoma related protein	8					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	all_cancers(8;0.109)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00241)|Lung(72;0.00712)		GCTGGGGGTGATACATCACCT	0.498													11	19					0	0	0.000978	0	0
EPHA6	285220	broad.mit.edu	37	3	96706525	96706525	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:96706525C>T	uc010how.1	+	3	845	c.802C>T	c.(802-804)CGT>TGT	p.R268C	EPHA6_uc003drp.1_Missense_Mutation_p.R268C	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	173	Ephrin-binding.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity	p.R174C(1)		stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						CACTGAAATTCGTGAGGTGGG	0.443													62	234					0	0	0.003610	0	0
EPHA6	285220	broad.mit.edu	37	3	96706780	96706780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:96706780C>T	uc010how.1	+	3	1100	c.1057C>T	c.(1057-1059)CCT>TCT	p.P353S	EPHA6_uc003drp.1_Missense_Mutation_p.P353S	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	258	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						TTGGCTGGTTCCTCTTGGAAG	0.413													23	67					0	0	0.002780	0	0
OR5H14	403273	broad.mit.edu	37	3	97868996	97868996	+	Missense_Mutation	SNP	C	T	T	rs141600035	by1000genomes	TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:97868996C>T	uc003dsg.1	+	1	767	c.767C>T	c.(766-768)GCC>GTC	p.A256V		NM_001005514	NP_001005514	A6NHG9	O5H14_HUMAN	olfactory receptor, family 5, subfamily H,	256	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GGGCCCCTCGCCTTCATGTAT	0.413													9	36					0	0	0.000443	0	0
ZPLD1	131368	broad.mit.edu	37	3	102189258	102189258	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:102189258G>A	uc003dvs.1	+	16	1836	c.954G>A	c.(952-954)AGG>AGA	p.R318R	ZPLD1_uc003dvt.1_Silent_p.R334R|ZPLD1_uc011bhg.1_Silent_p.R318R	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	318	ZP.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						ACAGAGAAAGGAGAGATGCTG	0.502													9	43					0	0	0.004482	0	0
CCDC54	84692	broad.mit.edu	37	3	107096900	107096900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:107096900G>A	uc003dwi.1	+	1	713	c.466G>A	c.(466-468)GAG>AAG	p.E156K		NM_032600	NP_115989	Q8NEL0	CCD54_HUMAN	coiled-coil domain containing 54	156											0						ACATTGTCTAGAGATTCTGGA	0.408													11	44					0	0	0.001368	0	0
MYH15	22989	broad.mit.edu	37	3	108110668	108110668	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:108110668G>A	uc003dxa.1	-	38	5486	c.5429C>T	c.(5428-5430)GCT>GTT	p.A1810V		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1810	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TTCAGCTTCAGCCAGCCTTTT	0.463													33	139					0	0	0.003755	0	0
MYH15	22989	broad.mit.edu	37	3	108139984	108139984	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:108139984C>G	uc003dxa.1	-	29	3897	c.3840G>C	c.(3838-3840)CAG>CAC	p.Q1280H		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1280	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CATTTGCCAACTGAGTCACCT	0.443													3	181					0	0	0.000248	0	0
DZIP3	9666	broad.mit.edu	37	3	108363472	108363472	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:108363472G>A	uc003dxd.2	+	14	2025	c.1603G>A	c.(1603-1605)GAT>AAT	p.D535N	DZIP3_uc003dxf.1_Missense_Mutation_p.D535N|DZIP3_uc011bhm.1_Intron|DZIP3_uc003dxe.1_Missense_Mutation_p.D535N|DZIP3_uc003dxg.1_Missense_Mutation_p.D258N	NM_014648	NP_055463	Q86Y13	DZIP3_HUMAN	DAZ interacting protein 3, zinc finger	535					protein polyubiquitination	cytoplasm	polyubiquitin binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						AAAAGTTTCAGATATTCTTCT	0.398													18	74					0	0	0.001216	0	0
MORC1	27136	broad.mit.edu	37	3	108773659	108773659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:108773659C>T	uc003dxl.2	-	14	1333	c.1246G>A	c.(1246-1248)GAA>AAA	p.E416K	MORC1_uc011bhn.1_Missense_Mutation_p.E416K	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	416					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TTGAGAAATTCCTGTTTATTA	0.388													16	81					0	0	0.004007	0	0
TAGLN3	29114	broad.mit.edu	37	3	111719727	111719727	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:111719727C>T	uc003dym.2	+	3	667	c.289C>T	c.(289-291)CTA>TTA	p.L97L	TAGLN3_uc003dyl.2_Silent_p.L97L|TAGLN3_uc003dyn.2_Silent_p.L97L|TAGLN3_uc003dyo.2_Silent_p.L97L	NM_001008272	NP_001008273	Q9UI15	TAGL3_HUMAN	transgelin 3	97	CH.				central nervous system development|muscle organ development						0						CTCCCAGTTCCTAAAAGCTGC	0.473													29	155					0	0	0.001786	0	0
SLC9A10	285335	broad.mit.edu	37	3	111958845	111958845	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:111958845C>T	uc003dyu.2	-	12	1510	c.1288G>A	c.(1288-1290)GAT>AAT	p.D430N	SLC9A10_uc011bhu.1_5'UTR|SLC9A10_uc010hqc.2_Missense_Mutation_p.D382N	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	430					cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						GATGTGGCATCACGAAGACCT	0.343													5	35					0	0	0.000602	0	0
GAP43	2596	broad.mit.edu	37	3	115439675	115439676	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:115439675_115439676CC>TT	uc003ebq.2	+	3	1049_1050	c.663_664CC>TT	c.(661-666)GCCCGG>GCTTGG	p.R222W	GAP43_uc003ebr.2_Missense_Mutation_p.R258W	NM_002045	NP_002036	P17677	NEUM_HUMAN	growth associated protein 43 isoform 2	222					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell differentiation|nervous system development|regulation of filopodium assembly|regulation of growth|response to wounding	cell junction|filopodium membrane|growth cone membrane|synapse	calmodulin binding			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.164)		AGGAAAGTGCCCGGCAGGACGA	0.475													26	203					0	0	0.004672	0	0
SLC15A2	6565	broad.mit.edu	37	3	121643849	121643849	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:121643849C>T	uc003eep.2	+	13	1246	c.1093C>T	c.(1093-1095)CGT>TGT	p.R365C	SLC15A2_uc011bjn.1_Missense_Mutation_p.R334C	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	365					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	TGTCATTTATCGTCTGGTCTC	0.368													28	159					0	0	0.001512	0	0
SLC15A2	6565	broad.mit.edu	37	3	121659245	121659245	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:121659245G>A	uc003eep.2	+	21	2076	c.1923G>A	c.(1921-1923)ATG>ATA	p.M641I	SLC15A2_uc011bjn.1_Missense_Mutation_p.M610I	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	641					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	CCTCTAGCATGAAATCTGTGC	0.498													10	50					0	0	0.000978	0	0
CASR	846	broad.mit.edu	37	3	121980790	121980790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:121980790C>T	uc003eev.3	+	4	1280	c.908C>T	c.(907-909)TCC>TTC	p.S303F	CASR_uc003eew.3_Missense_Mutation_p.S303F	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	303	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GCCAGCTCCTCCCTGATCGCC	0.597													11	64					0	0	0.000978	0	0
ACPP	55	broad.mit.edu	37	3	132061482	132061482	+	Nonsense_Mutation	SNP	T	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:132061482T>G	uc010htp.2	+	6	732	c.642T>G	c.(640-642)TAT>TAG	p.Y214*	ACPP_uc003eon.3_Nonsense_Mutation_p.Y181*|ACPP_uc003eop.3_Nonsense_Mutation_p.Y214*	NM_001099	NP_001090	P15309	PPAP_HUMAN	acid phosphatase, prostate short isoform	214						extracellular region|lysosomal membrane	5'-nucleotidase activity|acid phosphatase activity			ovary(1)	1						ACCCTTTATATTGTGAGGTAA	0.313													13	65					0	0	0.001855	0	0
TXNDC6	347736	broad.mit.edu	37	3	138023832	138023832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:138023832C>T	uc003esg.2	-	9	702	c.674G>A	c.(673-675)GGA>GAA	p.G225E	TXNDC6_uc003esd.1_Intron|TXNDC6_uc010huf.1_Missense_Mutation_p.G140E|TXNDC6_uc003ese.1_Missense_Mutation_p.G164E	NM_178130	NP_835231	Q86XW9	TXND6_HUMAN	thioredoxin domain containing 6	225	NDK.				cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|UTP biosynthetic process	cytoplasm|cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			breast(3)|ovary(1)|pancreas(1)	5						GTGGCTTGGTCCACTGCACAT	0.607													89	388					0	0	0.003610	0	0
IGSF10	285313	broad.mit.edu	37	3	151161558	151161558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:151161558G>A	uc011bod.1	-	5	5177	c.5177C>T	c.(5176-5178)TCC>TTC	p.S1726F	IGSF10_uc011bob.1_5'Flank|IGSF10_uc011boc.1_5'Flank	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1726	Ig-like C2-type 3.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AAACAGATTGGATGCGGAACA	0.512													6	41					0	0	0.001168	0	0
AADACL2	344752	broad.mit.edu	37	3	151474812	151474812	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:151474812C>G	uc003ezc.2	+	5	756	c.636C>G	c.(634-636)ATC>ATG	p.I212M	AADACL2_uc010hvn.2_Translation_Start_Site	NM_207365	NP_997248	Q6P093	ADCL2_HUMAN	arylacetamide deacetylase-like 2 precursor	212						extracellular region|integral to membrane	carboxylesterase activity				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			AACATAAAATCAAGATGCAAG	0.328													18	50					0	0	0.001216	0	0
PLCH1	23007	broad.mit.edu	37	3	155200026	155200026	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:155200026C>T	uc011bok.1	-	23	4090	c.3813G>A	c.(3811-3813)ACG>ACA	p.T1271T	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Silent_p.T1233T	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1271					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			AAACTGTGTTCGTTGCATGTT	0.468													20	150					0	0	0.001523	0	0
WDR49	151790	broad.mit.edu	37	3	167218007	167218007	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:167218007T>C	uc003fev.1	-	14	2215	c.1909A>G	c.(1909-1911)AAA>GAA	p.K637E	WDR49_uc003feu.1_Missense_Mutation_p.K462E|WDR49_uc011bpd.1_Missense_Mutation_p.K602E|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	637										large_intestine(1)|ovary(1)|skin(1)	3						CTAAAGTATTTCTCAGGGTCT	0.433													48	205					0	0	0.003610	0	0
SPATA16	83893	broad.mit.edu	37	3	172674560	172674560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:172674560G>A	uc003fin.3	-	6	1146	c.988C>T	c.(988-990)CCA>TCA	p.P330S		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	330					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			GTCGCAAATGGTGTGTACATA	0.363													13	67					0	0	0.003163	0	0
TBL1XR1	79718	broad.mit.edu	37	3	176769418	176769418	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:176769418C>T	uc003fiw.3	-	5	561	c.301G>A	c.(301-303)GAT>AAT	p.D101N	TBL1XR1_uc003fix.3_Missense_Mutation_p.D101N|TBL1XR1_uc011bpz.1_5'UTR|TBL1XR1_uc003fiy.2_Missense_Mutation_p.D101N	NM_024665	NP_078941	Q9BZK7	TBL1R_HUMAN	transducin (beta)-like 1 X-linked receptor 1	101					canonical Wnt receptor signaling pathway|cellular lipid metabolic process|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|proteasomal ubiquitin-dependent protein catabolic process|transcription, DNA-dependent	spindle microtubule|transcriptional repressor complex	beta-catenin binding|histone binding|protein N-terminus binding|transcription corepressor activity|transcription regulatory region DNA binding			ovary(1)	1	all_cancers(143;1.44e-17)|Ovarian(172;0.00163)|Breast(254;0.214)	Acute lymphoblastic leukemia(1;0.00599)|all_hematologic(1;0.0632)|Prostate(884;0.215)	OV - Ovarian serous cystadenocarcinoma(80;9.83e-31)			GCAAGCTTATCTCTATAAGCT	0.488													14	64					0	0	0.001855	0	0
TP63	8626	broad.mit.edu	37	3	189526134	189526134	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:189526134C>T	uc003fry.2	+	4	487	c.398C>T	c.(397-399)CCC>CTC	p.P133L	TP63_uc003frx.2_Missense_Mutation_p.P133L|TP63_uc003frz.2_Missense_Mutation_p.P133L|TP63_uc010hzc.1_Missense_Mutation_p.P133L|TP63_uc003fsa.2_Missense_Mutation_p.P39L|TP63_uc003fsb.2_Missense_Mutation_p.P39L|TP63_uc003fsc.2_Missense_Mutation_p.P39L|TP63_uc003fsd.2_Missense_Mutation_p.P39L|TP63_uc010hzd.1_Intron|TP63_uc003fse.1_Missense_Mutation_p.P14L	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	133					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		TCCACCAGTCCCTATAACACA	0.607									Hay-Wells_syndrome	HNSCC(45;0.13)			14	52					0	0	0.001855	0	0
TP63	8626	broad.mit.edu	37	3	189582062	189582062	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:189582062G>A	uc003fry.2	+	5	710	c.621G>A	c.(619-621)AAG>AAA	p.K207K	TP63_uc003frx.2_Silent_p.K207K|TP63_uc003frz.2_Silent_p.K207K|TP63_uc010hzc.1_Silent_p.K207K|TP63_uc003fsa.2_Silent_p.K113K|TP63_uc003fsb.2_Silent_p.K113K|TP63_uc003fsc.2_Silent_p.K113K|TP63_uc003fsd.2_Silent_p.K113K|TP63_uc010hzd.1_Silent_p.K28K|TP63_uc003fse.1_Silent_p.K88K	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	207					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		AAATTGCAAAGACATGCCCCA	0.502									Hay-Wells_syndrome	HNSCC(45;0.13)			25	147					0	0	0.002780	0	0
ATP13A5	344905	broad.mit.edu	37	3	193051540	193051540	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:193051540C>T	uc011bsq.1	-	11	1271	c.1271G>A	c.(1270-1272)GGA>GAA	p.G424E		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	424					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		AGTACTTACTCCATGGTACAT	0.428													10	76					0	0	0.000443	0	0
SDHAP1	255812	broad.mit.edu	37	3	195701304	195701304	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr3:195701304C>T	uc011btq.1	-	8	1189	c.560G>A	c.(559-561)GGC>GAC	p.G187D	SDHAP1_uc003fvx.3_RNA|SDHAP1_uc011btp.1_RNA					SubName: Full=cDNA FLJ56858, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						AGGGCACATGCCTGACCAGAC	0.572													8	42					0	0	0.000673	0	0
CTBP1	1487	broad.mit.edu	37	4	1208229	1208229	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:1208229G>A	uc003gcv.1	-	6	960	c.795C>T	c.(793-795)GCC>GCT	p.A265A	uc003gcs.1_Intron|CTBP1_uc003gct.1_Silent_p.A246A|CTBP1_uc003gcu.1_Silent_p.A254A|CTBP1_uc003gcw.2_5'Flank	NM_001328	NP_001319	Q13363	CTBP1_HUMAN	C-terminal binding protein 1 isoform 1	265	NAD (By similarity).				interspecies interaction between organisms|negative regulation of cell proliferation|negative regulation of histone H4 acetylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of histone deacetylation|protein phosphorylation|regulation of cell cycle|regulation of transcription by chromatin organization|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|viral genome replication|white fat cell differentiation	cytoplasm|transcriptional repressor complex	NAD binding|oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|protein C-terminus binding|protein domain specific binding|transcription factor binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.00818)	Colorectal(103;0.2)		GGCCACCCCGGGCTGTGTTCA	0.662													3	14					0	0	0.004672	0	0
MAN2B2	23324	broad.mit.edu	37	4	6596261	6596261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:6596261G>A	uc003gjf.1	+	7	895	c.859G>A	c.(859-861)GGA>AGA	p.G287R	MAN2B2_uc003gje.1_Missense_Mutation_p.G287R|MAN2B2_uc011bwf.1_Intron	NM_015274	NP_056089	Q9Y2E5	MA2B2_HUMAN	mannosidase, alpha, class 2B, member 2	287					mannose metabolic process	extracellular region	alpha-mannosidase activity|carbohydrate binding|zinc ion binding			ovary(2)	2						GTCCCTGCAGGGATGTGACAA	0.637													6	30					0	0	0.001984	0	0
DRD5	1816	broad.mit.edu	37	4	9784227	9784227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:9784227G>A	uc003gmb.3	+	1	970	c.574G>A	c.(574-576)GAC>AAC	p.D192N		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	192	Extracellular (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	GGGCGGGCTGGACCTGCCAAA	0.607													13	40					0	0	0.001368	0	0
DRD5	1816	broad.mit.edu	37	4	9784482	9784482	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:9784482G>A	uc003gmb.3	+	1	1225	c.829G>A	c.(829-831)GCC>ACC	p.A277T		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	277	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	GAGCAGCGCAGCCTGCGCGCC	0.642													8	30					0	0	0.003080	0	0
PGM2	55276	broad.mit.edu	37	4	37846085	37846085	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:37846085C>T	uc011byb.1	+	7	893	c.820C>T	c.(820-822)CCT>TCT	p.P274S	PGM2_uc011bya.1_Missense_Mutation_p.P135S|PGM2_uc011byc.1_Missense_Mutation_p.P114S	NM_018290	NP_060760	Q96G03	PGM2_HUMAN	phosphoglucomutase 2	274					glucose 1-phosphate metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	magnesium ion binding|phosphoglucomutase activity|phosphopentomutase activity			ovary(1)	1						TGACCTTGTTCCTCCTGAGGC	0.493													17	115					0	0	0.001882	0	0
TBC1D1	23216	broad.mit.edu	37	4	38016259	38016259	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:38016259G>A	uc003gtb.2	+	3	890	c.547G>A	c.(547-549)GTG>ATG	p.V183M	TBC1D1_uc011byd.1_Missense_Mutation_p.V183M|TBC1D1_uc010ifd.2_Intron|TBC1D1_uc011byf.1_Missense_Mutation_p.V54M	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	183						nucleus	Rab GTPase activator activity			ovary(1)	1						CCGCGTGACGGTGGCGCACAA	0.667													22	118					0	0	0.002299	0	0
UCHL1	7345	broad.mit.edu	37	4	41265263	41265263	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:41265263C>T	uc003gvo.2	+	7	577	c.481C>T	c.(481-483)CAT>TAT	p.H161Y	UCHL1_uc003gvp.2_Missense_Mutation_p.H80Y|UCHL1_uc003gvq.2_Missense_Mutation_p.H80Y|UCHL1_uc003gvr.2_Missense_Mutation_p.H80Y|UCHL1_uc003gvs.2_Missense_Mutation_p.H80Y	NM_004181	NP_004172	P09936	UCHL1_HUMAN	ubiquitin carboxyl-terminal esterase L1	161		Proton donor.		H->D: 10000-fold decrease in enzymatic activity; no change in affinity for ubiquitin ethyl ester.|H->K,Q,N,Y: Abolishes enzymatic activity.	cell death|negative regulation of MAP kinase activity|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus|plasma membrane	alpha-2A adrenergic receptor binding|cysteine-type endopeptidase activity|ligase activity|omega peptidase activity|ubiquitin binding|ubiquitin thiolesterase activity			central_nervous_system(1)|skin(1)	2						GGTGAATTTCCATTTTATTCT	0.333													14	71					0	0	0.002450	0	0
CNGA1	1259	broad.mit.edu	37	4	47939783	47939783	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:47939783T>C	uc003gxt.3	-	11	994	c.728A>G	c.(727-729)AAC>AGC	p.N243S	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Missense_Mutation_p.N312S	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	243	Helical; Name=H3; (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						AAATTGCAAGTTGGATTTATA	0.308													18	112					0	0	0.001882	0	0
SLC10A4	201780	broad.mit.edu	37	4	48487027	48487027	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:48487027G>A	uc003gyc.2	+	2	888	c.669G>A	c.(667-669)TGG>TGA	p.W223*		NM_152679	NP_689892	Q96EP9	NTCP4_HUMAN	solute carrier family 10, member 4	223	Extracellular (Potential).					integral to membrane	bile acid:sodium symporter activity			central_nervous_system(1)	1						GCTGGGCTTGGATCAACACCC	0.552													35	162					0	0	0.004289	0	0
CWH43	80157	broad.mit.edu	37	4	49063906	49063906	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:49063906G>A	uc003gyv.2	+	16	2281	c.2099G>A	c.(2098-2100)TGA>TAA	p.*700*	CWH43_uc011bzl.1_Silent_p.*673*	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	700					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						TACTTTTTATGAAACATTTAA	0.254													6	19					0	0	0.001984	0	0
PROL1	58503	broad.mit.edu	37	4	71275517	71275517	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:71275517C>T	uc003hfi.2	+	3	646	c.472C>T	c.(472-474)CCC>TCC	p.P158S		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	158	Thr-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				CACAAATCCCCCCACCACTGC	0.478													8	60					0	0	0.003080	0	0
SHROOM3	57619	broad.mit.edu	37	4	77691979	77691979	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:77691979C>T	uc011cbx.1	+	10	6503	c.5550C>T	c.(5548-5550)TCC>TCT	p.S1850S	SHROOM3_uc003hkg.2_Silent_p.S1628S	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	1850	ASD2.				apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			TGCTGCTCTCCCTCTCGGGGC	0.522													24	104					0	0	0.002780	0	0
FRAS1	80144	broad.mit.edu	37	4	79387463	79387463	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:79387463G>A	uc003hlb.2	+	50	7571	c.7131G>A	c.(7129-7131)ATG>ATA	p.M2377I		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2376	CSPG 11.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CCTTCACCATGAAAGATATCT	0.547													14	47					0	0	0.002450	0	0
PRKG2	5593	broad.mit.edu	37	4	82090825	82090825	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:82090825G>A	uc003hmh.2	-	4	854	c.840C>T	c.(838-840)TTC>TTT	p.F280F	PRKG2_uc011cch.1_Silent_p.F280F	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	280	cGMP 1.				platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						ACCTTCTGAGGAAGTTTCTGT	0.368													14	54					0	0	0.001855	0	0
MEPE	56955	broad.mit.edu	37	4	88766630	88766630	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:88766630C>T	uc003hqy.2	+	4	649	c.610C>T	c.(610-612)CAG>TAG	p.Q204*	MEPE_uc010ikn.2_Nonsense_Mutation_p.Q91*	NM_020203	NP_064588	Q9NQ76	MEPE_HUMAN	matrix, extracellular phosphoglycoprotein with	204					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			ovary(1)|lung(1)|skin(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000432)		TTCCCAAGCCCAGAAAAGTCC	0.378													18	63					0	0	0.001216	0	0
GRID2	2895	broad.mit.edu	37	4	94344033	94344033	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:94344033G>A	uc011cdt.1	+	10	1717	c.1459G>A	c.(1459-1461)GAA>AAA	p.E487K	GRID2_uc011cdu.1_Missense_Mutation_p.E392K	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	487	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	TTTTAACTACGAAATTTACGT	0.418													9	44					0	0	0.004482	0	0
ADH1B	125	broad.mit.edu	37	4	100237204	100237204	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:100237204G>A	uc003hus.3	-	5	502	c.418C>T	c.(418-420)CAC>TAC	p.H140Y	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.H100Y|ADH1B_uc011ceh.1_Intron|ADH1B_uc011cei.1_Missense_Mutation_p.H100Y	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	140					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	CCAAGGAAGTGGTGAATGGGC	0.572													13	58					0	0	0.001368	0	0
NDST3	9348	broad.mit.edu	37	4	118975844	118975844	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:118975844A>C	uc003ibx.2	+	2	1182	c.779A>C	c.(778-780)GAC>GCC	p.D260A	NDST3_uc011cgf.1_Missense_Mutation_p.D260A|NDST3_uc003ibw.2_Missense_Mutation_p.D260A	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	260	Lumenal (Potential).|Heparan sulfate N-deacetylase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						ATTATACATGACCTGGGGCTT	0.403													17	95					0	0	0.006122	0	0
PRSS12	8492	broad.mit.edu	37	4	119203267	119203267	+	Missense_Mutation	SNP	C	G	G	rs113331980		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:119203267C>G	uc003ica.1	-	13	2499	c.2452G>C	c.(2452-2454)GTG>CTG	p.V818L		NM_003619	NP_003610	P56730	NETR_HUMAN	neurotrypsin precursor	818	Peptidase S1.					membrane	scavenger receptor activity			skin(1)	1						CAGCTGTCCACGCGTTTGTGT	0.542													13	43					0	0	0.001368	0	0
SYNPO2	171024	broad.mit.edu	37	4	119978960	119978960	+	Silent	SNP	T	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:119978960T>C	uc010inb.2	+	5	3853	c.3657T>C	c.(3655-3657)TAT>TAC	p.Y1219Y	SYNPO2_uc011cgh.1_3'UTR|SYNPO2_uc010inc.2_Silent_p.Y1089Y	NM_133477	NP_597734	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform a	Error:Variant_position_missing_in_Q9UMS6_after_alignment						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						AGTTGCCATATGCATATTATA	0.433													13	69					0	0	0.004007	0	0
KIAA1109	84162	broad.mit.edu	37	4	123113461	123113461	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:123113461C>T	uc003ieh.2	+	9	1024	c.979C>T	c.(979-981)CCA>TCA	p.P327S	KIAA1109_uc003iei.1_Missense_Mutation_p.P81S	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	327					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						AGACTTGCCTCCATGTTGGGG	0.373													7	43					0	0	0.004482	0	0
PHF17	79960	broad.mit.edu	37	4	129783053	129783053	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:129783053C>T	uc003igk.2	+	9	1456	c.1176C>T	c.(1174-1176)TCC>TCT	p.S392S	PHF17_uc003igj.2_Silent_p.S392S|PHF17_uc003igl.2_Silent_p.S380S|PHF17_uc011cgy.1_Silent_p.S392S|PHF17_uc003igm.2_Silent_p.S392S	NM_199320	NP_955352	Q6IE81	JADE1_HUMAN	PHD finger protein 17 long isoform	392					apoptosis|histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation|negative regulation of cell growth|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	histone acetyltransferase complex|mitochondrion	protein binding|zinc ion binding				0						CTGAGTGTTCCCCCCGGAATC	0.597													20	98					0	0	0.001523	0	0
GYPA	2993	broad.mit.edu	37	4	145038046	145038046	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:145038046C>T	uc003ijo.3	-	5	434	c.318G>A	c.(316-318)ACG>ACA	p.T106T	GYPA_uc003ijn.2_Intron|GYPA_uc011cia.1_RNA|GYPA_uc011cib.1_Silent_p.T73T|GYPA_uc003ijp.3_Silent_p.T74T|GYPA_uc010ioq.2_Silent_p.T93T|GYPA_uc010ior.2_Silent_p.T41T|GYPA_uc010ios.1_RNA	NM_002099	NP_002090	P02724	GLPA_HUMAN	glycophorin A precursor	106	Helical.				interspecies interaction between organisms	membrane fraction	receptor activity			central_nervous_system(2)	2	all_hematologic(180;0.15)					TTAAGAGGATCGTTCCAATAA	0.358													35	162					0	0	0.004878	0	0
NR3C2	4306	broad.mit.edu	37	4	149356890	149356890	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:149356890G>A	uc003ilj.3	-	2	1457	c.1123C>T	c.(1123-1125)CCT>TCT	p.P375S	NR3C2_uc003ilk.3_Missense_Mutation_p.P375S|NR3C2_uc010iph.2_RNA	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	375	Modulating.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	TCAGTCTTAGGAAAAGGGACC	0.498													15	74					0	0	0.003163	0	0
LRBA	987	broad.mit.edu	37	4	151392883	151392883	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:151392883G>A	uc010ipj.2	-	44	7067	c.6593C>T	c.(6592-6594)TCA>TTA	p.S2198L	LRBA_uc003ils.3_Missense_Mutation_p.S88L|LRBA_uc003ilt.3_Missense_Mutation_p.S846L|LRBA_uc003ilu.3_Missense_Mutation_p.S2187L	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	2198						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					ACTAGCTAATGAAATACGTCT	0.313													10	86					0	0	0.000443	0	0
TIGD4	201798	broad.mit.edu	37	4	153691255	153691255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:153691255G>A	uc003imy.2	-	2	1684	c.902C>T	c.(901-903)TCC>TTC	p.S301F		NM_145720	NP_663772	Q8IY51	TIGD4_HUMAN	tigger transposable element derived 4	301	DDE.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	chromatin binding|DNA binding			ovary(1)	1	all_hematologic(180;0.093)					TAACTCAATGGATTTTAGGTT	0.368													15	74					0	0	0.003163	0	0
ACCN5	51802	broad.mit.edu	37	4	156775308	156775308	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:156775308A>C	uc003ipe.1	-	3	553	c.506T>G	c.(505-507)TTT>TGT	p.F169C		NM_017419	NP_059115	Q9NY37	ACCN5_HUMAN	amiloride-sensitive cation channel 5,	169	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0464)|Kidney(143;0.058)|COAD - Colon adenocarcinoma(41;0.141)		GTTCCTGATAAATTCCACAAT	0.393													10	62					0	0	0.000443	0	0
ZFP42	132625	broad.mit.edu	37	4	188924380	188924380	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:188924380C>T	uc003izg.1	+	3	664	c.419C>T	c.(418-420)TCG>TTG	p.S140L	ZFP42_uc003izh.1_Missense_Mutation_p.S140L|ZFP42_uc003izi.1_Missense_Mutation_p.S140L	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	140					female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		GGAGAGAATTCGCTTGAGTAT	0.423													16	96					0	0	0.004007	0	0
TRIML2	205860	broad.mit.edu	37	4	189012755	189012755	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr4:189012755G>A	uc003izl.2	-	7	972	c.936C>T	c.(934-936)TTC>TTT	p.F312F	TRIML2_uc003izj.1_Silent_p.F140F|TRIML2_uc003izk.1_Silent_p.F120F|TRIML2_uc011cle.1_Silent_p.F387F	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	312	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		TCTTTTCCAGGAAGAGCCTTT	0.527													27	158					0	0	0.002096	0	0
PDZD2	23037	broad.mit.edu	37	5	32090403	32090403	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:32090403G>A	uc003jhl.2	+	20	7237	c.6849G>A	c.(6847-6849)CTG>CTA	p.L2283L	PDZD2_uc003jhm.2_Silent_p.L2283L	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	2283					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						TAAAGCCGCTGCTGGACACAT	0.522													18	76					0	0	0.002299	0	0
PRLR	5618	broad.mit.edu	37	5	35065841	35065841	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:35065841G>A	uc003jjm.2	-	10	1749	c.1219C>T	c.(1219-1221)CAT>TAT	p.H407Y	PRLR_uc003jjg.1_Intron|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Missense_Mutation_p.H306Y	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	407	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	CCACCAGCATGAAAATAGGGG	0.493													33	157					0	0	0.004878	0	0
SPEF2	79925	broad.mit.edu	37	5	35795863	35795863	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:35795863C>G	uc003jjo.2	+	33	4907	c.4796C>G	c.(4795-4797)CCC>CGC	p.P1599R	SPEF2_uc003jjp.1_Missense_Mutation_p.P1085R|SPEF2_uc003jjr.2_Missense_Mutation_p.P654R	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1599					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CCTCTTGAACCCCTTCCATTT	0.318													16	85					0	0	0.001523	0	0
LIFR	3977	broad.mit.edu	37	5	38482697	38482697	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:38482697G>A	uc010ive.1	-	19	2996	c.2664C>T	c.(2662-2664)GTC>GTT	p.V888V	LIFR_uc003jli.2_Silent_p.V888V	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	888	Cytoplasmic (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					TTACCTCACAGACACTCTTTT	0.249			T	PLAG1	salivary adenoma								9	83					0	0	0.001368	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41039565	41039565	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:41039565G>A	uc003jmj.3	-	20	2536	c.2046C>T	c.(2044-2046)TTC>TTT	p.F682F	HEATR7B2_uc003jmi.3_Silent_p.F237F	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	682	HEAT 8.						binding			ovary(6)|central_nervous_system(2)	8						ATCGATTCATGAAAAACTTTT	0.323													4	12					0	0	0.000248	0	0
ITGA1	3672	broad.mit.edu	37	5	52223444	52223444	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:52223444C>T	uc003jou.2	+	20	2696	c.2644C>T	c.(2644-2646)CAT>TAT	p.H882Y	ITGA1_uc003jov.2_RNA|ITGA1_uc003jow.2_Missense_Mutation_p.H413Y	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	882	Extracellular (Potential).				axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity			ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				TGAATCTAATCATAATATCAC	0.348													16	97					0	0	0.001216	0	0
DHX29	54505	broad.mit.edu	37	5	54579183	54579183	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:54579183C>T	uc003jpx.2	-	11	1933	c.1813G>A	c.(1813-1815)GTA>ATA	p.V605I	DHX29_uc010ivw.2_RNA	NM_019030	NP_061903	Q7Z478	DHX29_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 29	605	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|translation initiation factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0544)|Prostate(74;0.183)				AAATGTGGTACCTGAGTACTT	0.413													15	72					0	0	0.002450	0	0
DDX4	54514	broad.mit.edu	37	5	55088625	55088625	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:55088625G>A	uc003jqg.3	+	17	1533	c.1459G>A	c.(1459-1461)GAA>AAA	p.E487K	DDX4_uc010ivz.2_Missense_Mutation_p.E467K|DDX4_uc003jqh.3_Missense_Mutation_p.E453K|DDX4_uc003jqj.2_Missense_Mutation_p.E338K	NM_001136034	NP_001129506	Q9NQI0	DDX4_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform	487	Helicase ATP-binding.				multicellular organismal development|sperm motility	perinuclear region of cytoplasm|pi-body|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|skin(1)	2		Lung NSC(810;6.93e-05)|all_neural(839;0.00409)|Prostate(74;0.0107)|Breast(144;0.0544)|Ovarian(174;0.223)				TTTTCCAGAGGAAATTCAAAG	0.313													6	23					0	0	0.001168	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64587197	64587197	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:64587197G>A	uc003jtp.2	-	11	2285	c.1471C>T	c.(1471-1473)CGT>TGT	p.R491C	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_Missense_Mutation_p.R112C	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	491					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		TACTGGAAACGACATTGCTCA	0.468													14	70					0	0	0.004990	0	0
MAST4	375449	broad.mit.edu	37	5	66459221	66459221	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:66459221G>A	uc003jut.1	+	28	3715	c.3647G>A	c.(3646-3648)GGC>GAC	p.G1216D	MAST4_uc003juw.2_Missense_Mutation_p.G1144D|MAST4_uc003jux.2_5'Flank	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	1408						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		CACTCACTGGGCAATTCCAAG	0.657													11	26					0	0	0.001368	0	0
TNPO1	3842	broad.mit.edu	37	5	72192969	72192969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:72192969G>A	uc003kck.3	+	20	2476	c.2329G>A	c.(2329-2331)GAG>AAG	p.E777K	TNPO1_uc011csj.1_Missense_Mutation_p.E727K|TNPO1_uc003kch.2_Missense_Mutation_p.E769K|TNPO1_uc003kci.3_Missense_Mutation_p.E769K|TNPO1_uc003kcg.3_Missense_Mutation_p.E769K	NM_002270	NP_002261	Q92973	TNPO1_HUMAN	transportin 1 isoform 1	777					interspecies interaction between organisms|mRNA metabolic process|protein import into nucleus, translocation	cytosol|nucleus	nuclear localization sequence binding|protein binding|protein transporter activity			skin(3)|urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)	7		Lung NSC(167;0.0053)|Ovarian(174;0.0175)		OV - Ovarian serous cystadenocarcinoma(47;6.14e-54)		GACGTTGTTAGAGAATACAGG	0.373													10	40					0	0	0.000673	0	0
TMEM171	134285	broad.mit.edu	37	5	72419678	72419678	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:72419678T>C	uc003kcm.2	+	2	682	c.478T>C	c.(478-480)TTC>CTC	p.F160L	TMEM171_uc003kcn.3_Missense_Mutation_p.F160L	NM_173490	NP_775761	Q8WVE6	TM171_HUMAN	transmembrane protein 171 isoform 1	160	Helical; (Potential).					integral to membrane					0		Lung NSC(167;0.0378)|Ovarian(174;0.0908)|Prostate(461;0.165)		OV - Ovarian serous cystadenocarcinoma(47;1.87e-54)|Lung(70;0.115)		GATGTGTGGGTTCCTTTCTCT	0.557													19	85					0	0	0.000958	0	0
SCAMP1	9522	broad.mit.edu	37	5	77745826	77745826	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:77745826C>T	uc003kfl.2	+	7	859	c.702C>T	c.(700-702)CTC>CTT	p.L234L	SCAMP1_uc010jaa.2_RNA|SCAMP1_uc011ctc.1_RNA|SCAMP1_uc011ctd.1_RNA|SCAMP1_uc003kfm.2_Intron	NM_004866	NP_004857	O15126	SCAM1_HUMAN	secretory carrier membrane protein 1	234	Helical; (Potential).				post-Golgi vesicle-mediated transport|protein transport	integral to membrane|recycling endosome membrane|trans-Golgi network	protein binding				0		all_lung(232;0.000397)|Lung NSC(167;0.00105)|Ovarian(174;0.0105)|Prostate(461;0.214)		OV - Ovarian serous cystadenocarcinoma(54;1.9e-46)|Epithelial(54;9.4e-43)|all cancers(79;1.12e-37)		TACATGTACTCCAAGCTGCAG	0.274													18	156					0	0	0.001216	0	0
CMYA5	202333	broad.mit.edu	37	5	79026497	79026497	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:79026497G>A	uc003kgc.2	+	2	1981	c.1909G>A	c.(1909-1911)GAA>AAA	p.E637K		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	637	Glu-rich.					perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AGAGAATGAGGAATTTGAGGC	0.463													16	64					0	0	0.006122	0	0
CMYA5	202333	broad.mit.edu	37	5	79054694	79054694	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:79054694G>A	uc003kgc.2	+	7	11301	c.11229G>A	c.(11227-11229)ATG>ATA	p.M3743I		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	3743	Fibronectin type-III 1.					perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		TTTACTGCATGGAGGAGCCAC	0.373													24	107					0	0	0.001061	0	0
GPR98	84059	broad.mit.edu	37	5	89990242	89990242	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:89990242C>T	uc003kju.2	+	33	7765	c.7669C>T	c.(7669-7671)CAG>TAG	p.Q2557*	GPR98_uc003kjt.2_Nonsense_Mutation_p.Q263*|GPR98_uc003kjv.2_Nonsense_Mutation_p.Q157*	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2557	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTTGAAAAATCAGCCAACCAT	0.383													24	137					0	0	0.003954	0	0
FAM81B	153643	broad.mit.edu	37	5	94772524	94772524	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:94772524G>A	uc003kla.1	+	7	853	c.807G>A	c.(805-807)AAG>AAA	p.K269K	FAM81B_uc010jbe.1_Silent_p.K65K	NM_152548	NP_689761	Q96LP2	FA81B_HUMAN	hypothetical protein LOC153643	269										ovary(1)|skin(1)	2		all_cancers(142;1.1e-06)|all_epithelial(76;1.48e-09)|all_lung(232;0.000696)|Lung NSC(167;0.000947)|Ovarian(225;0.00473)		all cancers(79;1.04e-16)		TCTTAGGAAAGATAGAAACTG	0.398													9	30					0	0	0.004482	0	0
PPIP5K2	23262	broad.mit.edu	37	5	102522092	102522092	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:102522092T>A	uc003kod.3	+	27	3760	c.3241T>A	c.(3241-3243)TAT>AAT	p.Y1081N	PPIP5K2_uc011cva.1_RNA|PPIP5K2_uc003koe.2_Missense_Mutation_p.Y1081N|PPIP5K2_uc003kof.2_Intron	NM_015216	NP_056031	O43314	VIP2_HUMAN	Histidine acid phosphatase domain containing 1	1081					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity			ovary(1)|skin(1)	2						CCTACAGGATTATGCTCGTAC	0.502													10	65					0	0	0.000443	0	0
C5orf13	9315	broad.mit.edu	37	5	111066733	111066734	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:111066733_111066734GG>AA	uc003kpl.2	-	3	570_571	c.91_92CC>TT	c.(91-93)CCT>TTT	p.P31F	C5orf13_uc011cvr.1_Missense_Mutation_p.P75F|C5orf13_uc011cvs.1_Missense_Mutation_p.P65F|C5orf13_uc003kpk.2_Intron|C5orf13_uc003kpm.2_Missense_Mutation_p.P31F|C5orf13_uc011cvk.1_Missense_Mutation_p.P31F|C5orf13_uc011cvl.1_Missense_Mutation_p.P31F|C5orf13_uc011cvm.1_Missense_Mutation_p.P31F|C5orf13_uc011cvn.1_Missense_Mutation_p.P31F|C5orf13_uc011cvo.1_Missense_Mutation_p.P31F|C5orf13_uc011cvp.1_Missense_Mutation_p.P31F|C5orf13_uc011cvq.1_Missense_Mutation_p.P31F	NM_001142483	NP_001135955	Q16612	NP311_HUMAN	neuronal protein 3.1 isoform a	31						cytoplasm				skin(1)	1		all_cancers(142;0.00597)|all_epithelial(76;0.000144)|Prostate(80;0.0115)|Colorectal(10;0.0446)|Ovarian(225;0.156)		OV - Ovarian serous cystadenocarcinoma(64;5.45e-09)|Epithelial(69;2e-08)|all cancers(49;1.9e-06)|COAD - Colon adenocarcinoma(37;0.0514)|Colorectal(14;0.0629)		CTTTGGGACAGGAAGTCTTCCC	0.46													5	35					0	0	0.004672	0	0
MCC	4163	broad.mit.edu	37	5	112720776	112720776	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:112720776G>A	uc003kql.3	-	2	720	c.304C>T	c.(304-306)CGA>TGA	p.R102*	MCC_uc003kqk.3_RNA	NM_001085377	NP_001078846	P23508	CRCM_HUMAN	mutated in colorectal cancers isoform 1	Error:Variant_position_missing_in_P23508_after_alignment					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane	protein binding|receptor activity			ovary(1)	1		all_cancers(142;5.89e-08)|all_epithelial(76;3.57e-11)|all_lung(232;0.000605)|Lung NSC(810;0.000697)|Colorectal(10;0.00146)|Prostate(80;0.00174)|Ovarian(225;0.0175)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(64;2.04e-54)|Epithelial(69;9.69e-49)|all cancers(49;6.25e-44)|COAD - Colon adenocarcinoma(37;0.0432)|Colorectal(14;0.0766)		CTAATTTCTCGAACAAGCTGC	0.458													17	104					0	0	0.000958	0	0
VDAC1	7416	broad.mit.edu	37	5	133316436	133316436	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:133316436G>A	uc003kyp.1	-	6	634	c.535C>T	c.(535-537)CAG>TAG	p.Q179*	VDAC1_uc003kyq.1_Nonsense_Mutation_p.Q179*|VDAC1_uc003kyr.1_Nonsense_Mutation_p.Q179*	NM_003374	NP_003365	P21796	VDAC1_HUMAN	voltage-dependent anion channel 1	179	Beta stranded.				apoptosis|interspecies interaction between organisms	mitochondrial nucleoid|mitochondrial outer membrane|plasma membrane|pore complex	porin activity|protein binding|voltage-gated anion channel activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00806)|Kidney(363;0.02)		Dihydroxyaluminium(DB01375)	GTGTGAAGCTGGAATTCATCA	0.498													8	21					0	0	0.003080	0	0
SKP1	6500	broad.mit.edu	37	5	133509699	133509699	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:133509699C>T	uc003kzc.3	-	2	194	c.15G>A	c.(13-15)AAG>AAA	p.K5K	SKP1_uc003kzd.3_Silent_p.K5K|SKP1_uc010jdv.2_Silent_p.K5K	NM_170679	NP_733779	P63208	SKP1_HUMAN	S-phase kinase-associated protein 1 isoform b	5					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|G1/S transition of mitotic cell cycle|histone H2A monoubiquitination|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|viral reproduction	cytosol|nucleoplasm|SCF ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			AACTCTGCAACTTAATTGAAG	0.338													5	46					0	0	0.001168	0	0
PCDHA10	56139	broad.mit.edu	37	5	140237071	140237071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:140237071G>A	uc003lhx.2	+	1	1438	c.1438G>A	c.(1438-1440)GAC>AAC	p.D480N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Missense_Mutation_p.D480N|PCDHA10_uc011dad.1_Missense_Mutation_p.D480N	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	480	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTCTGCGTGGGACGCGGACGC	0.657													18	115					0	0	0.000958	0	0
PCDHA11	56138	broad.mit.edu	37	5	140250357	140250357	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:140250357G>A	uc003lia.2	+	1	2527	c.1669G>A	c.(1669-1671)GAG>AAG	p.E557K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.E557K	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	557	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTGCTGGACGAGAACGACAA	0.677													36	135					0	0	0.004878	0	0
PCDHB5	26167	broad.mit.edu	37	5	140517171	140517171	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:140517171G>A	uc003liq.2	+	1	2372	c.2155G>A	c.(2155-2157)GCC>ACC	p.A719T		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	719	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAGCAGGGCGGCCTCGGTCGG	0.657													34	156					0	0	0.003755	0	0
PCDHB7	56129	broad.mit.edu	37	5	140554611	140554611	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:140554611G>A	uc003lit.2	+	1	2369	c.2195G>A	c.(2194-2196)CGA>CAA	p.R732Q	PCDHB8_uc011dai.1_5'Flank	NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	732	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding	p.R732*(1)		ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCCTTTCCACGACATCTGGTG	0.637													26	278					0	0	0.004656	0	0
PCDHB10	56126	broad.mit.edu	37	5	140572684	140572684	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:140572684G>A	uc003lix.2	+	1	733	c.559G>A	c.(559-561)GAA>AAA	p.E187K		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	187	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGGCGGTGATGAAGGCATGAT	0.493													34	161					0	0	0.001951	0	0
PCDHB11	56125	broad.mit.edu	37	5	140579527	140579527	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:140579527C>T	uc003liy.2	+	1	180	c.180C>T	c.(178-180)TCC>TCT	p.S60S	PCDHB11_uc011daj.1_Intron	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	60	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAGAACTGTCCTCACGGGGGG	0.512													12	67					0	0	0.001855	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140710501	140710501	+	Silent	SNP	T	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:140710501T>C	uc003lji.1	+	1	250	c.250T>C	c.(250-252)TTG>CTG	p.L84L	PCDHGA1_uc011dan.1_Silent_p.L84L	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	84	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGTGGCAGCTTGATCACCGC	0.552													34	151					0	0	0.002836	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140735399	140735399	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:140735399T>C	uc003ljq.1	+	1	632	c.632T>C	c.(631-633)GTT>GCT	p.V211A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Missense_Mutation_p.V211A	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	211	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACCACCTCGTTCTCACGGCC	0.557													3	10					0	0	0.004672	0	0
PCDHGC5	56097	broad.mit.edu	37	5	140870982	140870982	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:140870982G>A	uc003lla.1	+	1	2175	c.2175G>A	c.(2173-2175)GGG>GGA	p.G725G	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc003lky.1_Intron|PCDHGC5_uc011dbc.1_Silent_p.G725G	NM_018929	NP_061752	Q9Y5F6	PCDGM_HUMAN	protocadherin gamma subfamily C, 5 isoform 1	725	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGGGGACGGGGGTGGAGGGC	0.597													22	81					0	0	0.001882	0	0
SLC6A7	6534	broad.mit.edu	37	5	149580710	149580710	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:149580710G>A	uc003lrr.2	+	6	1153	c.782G>A	c.(781-783)GGA>GAA	p.G261E		NM_014228	NP_055043	Q99884	SC6A7_HUMAN	solute carrier family 6, member 7	261						integral to plasma membrane|membrane fraction	neurotransmitter:sodium symporter activity|proline:sodium symporter activity				0		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		L-Proline(DB00172)	CTGGTCCGCGGAGTCACCCTC	0.597													15	59					0	0	0.003163	0	0
GRIA1	2890	broad.mit.edu	37	5	153175055	153175055	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:153175055G>A	uc003lva.3	+	14	2655	c.2290G>A	c.(2290-2292)GTT>ATT	p.V764I	GRIA1_uc003luy.3_Intron|GRIA1_uc003luz.3_Missense_Mutation_p.V669I|GRIA1_uc011dcv.1_Intron|GRIA1_uc011dcw.1_Intron|GRIA1_uc011dcx.1_Intron|GRIA1_uc011dcy.1_Missense_Mutation_p.V774I|GRIA1_uc011dcz.1_Intron	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	764	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	AAACCTAGCGGTTTTGAAACT	0.418													5	15					0	0	0.000602	0	0
GEMIN5	25929	broad.mit.edu	37	5	154272026	154272026	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:154272026G>A	uc003lvx.3	-	25	3764	c.3681C>T	c.(3679-3681)CTC>CTT	p.L1227L	GEMIN5_uc011ddk.1_Silent_p.L1226L	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	1227					ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			CCGCCCGAAGGAGCGCCTGCA	0.587													9	40					0	0	0.004482	0	0
CYFIP2	26999	broad.mit.edu	37	5	156752589	156752589	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:156752589C>T	uc003lwq.2	+	19	2063	c.1925C>T	c.(1924-1926)TCC>TTC	p.S642F	CYFIP2_uc011ddn.1_Missense_Mutation_p.S616F|CYFIP2_uc011ddo.1_Missense_Mutation_p.S446F|CYFIP2_uc003lwr.2_Missense_Mutation_p.S642F|CYFIP2_uc003lws.2_Missense_Mutation_p.S642F|CYFIP2_uc003lwt.2_Missense_Mutation_p.S545F|CYFIP2_uc011ddp.1_Missense_Mutation_p.S376F	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	667					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ATCGAGATGTCCATGCCCTGG	0.537													54	337					0	0	0.003610	0	0
GABRG2	2566	broad.mit.edu	37	5	161580116	161580116	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:161580116C>T	uc003lyz.3	+	9	1504	c.1146C>T	c.(1144-1146)ATC>ATT	p.I382I	GABRG2_uc010jjc.2_Silent_p.I430I|GABRG2_uc003lyy.3_Silent_p.I390I|GABRG2_uc011dej.1_Silent_p.I287I	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	382	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		CCATTGATATCCGCCCAAGAT	0.488													12	65					0	0	0.002450	0	0
DOCK2	1794	broad.mit.edu	37	5	169454876	169454876	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:169454876G>A	uc003maf.2	+	34	3471	c.3391G>A	c.(3391-3393)GAA>AAA	p.E1131K	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.E623K	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1131	DHR-2.|Interaction with CRKL.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GTTTGAAAACGAAATCATCCT	0.408													21	75					0	0	0.002299	0	0
GABRP	2568	broad.mit.edu	37	5	170232826	170232826	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:170232826C>T	uc003mau.2	+	7	846	c.648C>T	c.(646-648)TTC>TTT	p.F216F	GABRP_uc011dev.1_Silent_p.F216F	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	216	Extracellular (Potential).					cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			AGCGGTATTTCACCTTAGTCA	0.478													9	40					0	0	0.004482	0	0
STK10	6793	broad.mit.edu	37	5	171491790	171491790	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:171491790G>A	uc003mbo.1	-	13	2316	c.2016C>T	c.(2014-2016)CCC>CCT	p.P672P		NM_005990	NP_005981	O94804	STK10_HUMAN	serine/threonine kinase 10	672	Potential.						ATP binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|testis(1)|breast(1)|pancreas(1)	8	Renal(175;0.000159)|Lung NSC(126;0.0056)|all_lung(126;0.0094)	Medulloblastoma(196;0.00868)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GCTGCTGTCGGGGGAGCTTCT	0.567													13	65					0	0	0.004007	0	0
EIF4E1B	253314	broad.mit.edu	37	5	176070207	176070207	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:176070207G>A	uc010jkf.1	+	4	724	c.140G>A	c.(139-141)GGG>GAG	p.G47E		NM_001099408	NP_001092878	A6NMX2	I4E1B_HUMAN	eukaryotic translation initiation factor 4E	47					regulation of translation	cytoplasm|mRNA cap binding complex	translation initiation factor activity				0	all_cancers(89;0.00185)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.00498)|all_neural(177;0.0212)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TCTCTGAGAGGGAAGGCCCGG	0.378													8	59					0	0	0.000673	0	0
UNC5A	90249	broad.mit.edu	37	5	176306860	176306860	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:176306860C>T	uc003mey.2	+	15	2694	c.2502C>T	c.(2500-2502)CTC>CTT	p.L834L		NM_133369	NP_588610	Q6ZN44	UNC5A_HUMAN	netrin receptor Unc5h1 precursor	834	Death.|Cytoplasmic (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane|plasma membrane				skin(1)	1	all_cancers(89;0.000119)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			ACGCTGGCCTCTTCACAGTGT	0.657													6	26					0	0	0.001168	0	0
ZNF354C	30832	broad.mit.edu	37	5	178506847	178506847	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:178506847C>T	uc003mju.2	+	5	1529	c.1414C>T	c.(1414-1416)CAG>TAG	p.Q472*		NM_014594	NP_055409	Q86Y25	Z354C_HUMAN	zinc finger protein 354C	472	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(89;0.00065)|all_epithelial(37;0.000153)|Renal(175;0.000159)|Lung NSC(126;0.00175)|all_lung(126;0.00309)	all_cancers(40;0.19)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.247)		TCAGTGTAATCAGTGTGGAAA	0.403													15	49					0	0	0.004007	0	0
GNB2L1	10399	broad.mit.edu	37	5	180668525	180668525	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr5:180668525C>T	uc003mni.1	-	3	502	c.396G>A	c.(394-396)TGG>TGA	p.W132*	GNB2L1_uc003mnh.1_Nonsense_Mutation_p.W91*|GNB2L1_uc003mnk.1_Nonsense_Mutation_p.W54*|GNB2L1_uc003mnj.1_Nonsense_Mutation_p.W86*|GNB2L1_uc003mnl.1_5'UTR|GNB2L1_uc011dhk.1_Nonsense_Mutation_p.W132*|GNB2L1_uc010jls.2_Nonsense_Mutation_p.W91*|GNB2L1_uc011dhl.1_Nonsense_Mutation_p.W132*	NM_006098	NP_006089	P63244	GBLP_HUMAN	guanine nucleotide binding protein (G protein),	132	WD 3.				apoptosis|cell cycle|gastrulation|interspecies interaction between organisms|negative regulation of cell growth|negative regulation of phagocytosis|negative regulation of translation|negative regulation of Wnt receptor signaling pathway|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of gastrulation|positive regulation of GTPase activity|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein homooligomerization|positive regulation of protein phosphorylation|regulation of cell cycle|regulation of cell division|regulation of establishment of cell polarity|regulation of protein localization|rhythmic process	cytoskeleton|dendrite|midbody|nucleus|perikaryon|perinuclear region of cytoplasm|phagocytic cup|small ribosomal subunit	ion channel inhibitor activity|protein kinase C binding|protein phosphatase binding|protein tyrosine kinase inhibitor activity|receptor tyrosine kinase binding|SH2 domain binding				0	all_cancers(89;8.79e-06)|all_epithelial(37;1.13e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0654)	all_cancers(40;0.000209)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_lung(500;0.0221)|all_hematologic(541;0.0433)|Lung NSC(249;0.132)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.101)|all cancers(165;0.11)		CCAGGGTATTCCATAGCTTGA	0.438													28	119					0	0	0.001786	0	0
GMDS	2762	broad.mit.edu	37	6	1742779	1742779	+	Silent	SNP	G	A	A	rs149057214		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:1742779G>A	uc003mtq.2	-	8	1003	c.813C>T	c.(811-813)TTC>TTT	p.F271F		NM_001500	NP_001491	O60547	GMDS_HUMAN	GDP-mannose 4,6-dehydratase	271					'de novo' GDP-L-fucose biosynthetic process|GDP-mannose metabolic process|leukocyte cell-cell adhesion		coenzyme binding|GDP-mannose 4,6-dehydratase activity			central_nervous_system(1)	1	Ovarian(93;0.0733)	all_cancers(2;7.64e-19)|all_epithelial(2;3.05e-16)|Colorectal(2;0.00414)|all_hematologic(90;0.00997)|all_lung(73;0.0141)|Lung NSC(90;0.0802)		Epithelial(2;7.61e-06)|all cancers(2;0.000111)|STAD - Stomach adenocarcinoma(2;0.000231)|Colorectal(2;0.00445)|COAD - Colon adenocarcinoma(2;0.0125)|OV - Ovarian serous cystadenocarcinoma(45;0.0563)		TAGCTATAACGAAGTCCTCCG	0.443													15	56					0	0	0.004007	0	0
WRNIP1	56897	broad.mit.edu	37	6	2768977	2768977	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:2768977T>A	uc003mtz.2	+	2	1066	c.875T>A	c.(874-876)TTT>TAT	p.F292Y	WRNIP1_uc003mua.2_Missense_Mutation_p.F292Y	NM_020135	NP_064520	Q96S55	WRIP1_HUMAN	Werner helicase interacting protein isoform 1	292					DNA replication|DNA synthesis involved in DNA repair|regulation of DNA-dependent DNA replication initiation	mitochondrion|nucleus|perinuclear region of cytoplasm	ATP binding|ATPase activity|DNA binding|metal ion binding|protein binding			ovary(1)|pancreas(1)	2	Ovarian(93;0.0412)	all_hematologic(90;0.0895)				AGCATAAGGTTTGTGACATTA	0.383													12	36					0	0	0.000978	0	0
F13A1	2162	broad.mit.edu	37	6	6305714	6305714	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:6305714C>T	uc003mwv.2	-	3	312	c.189G>A	c.(187-189)GTG>GTA	p.V63V	F13A1_uc011dib.1_Intron	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	63					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	TGTGGTGGTCCACCTTGTTAG	0.428													9	37					0	0	0.000673	0	0
DSP	1832	broad.mit.edu	37	6	7580796	7580796	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:7580796G>A	uc003mxp.1	+	23	4652	c.4373G>A	c.(4372-4374)CGA>CAA	p.R1458Q	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1458	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ACTCAGATGCGAACAGAGGAG	0.463													8	59					0	0	0.004482	0	0
MAK	4117	broad.mit.edu	37	6	10764829	10764829	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:10764829C>T	uc003mzl.2	-	13	1957	c.1728G>A	c.(1726-1728)TGG>TGA	p.W576*	SYCP2L_uc011dim.1_Intron|TMEM14B_uc010jos.1_Intron|MAK_uc010jot.2_RNA|MAK_uc010jou.2_RNA|MAK_uc003mzm.2_Nonsense_Mutation_p.W576*	NM_005906	NP_005897	P20794	MAK_HUMAN	male germ cell-associated kinase	576					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|cyclin-dependent protein kinase activity			breast(2)|skin(1)	3	Breast(50;0.107)|Ovarian(93;0.107)	all_hematologic(90;0.117)				TTTTTGTGTTCCAGGTATATT	0.388													13	82					0	0	0.001855	0	0
KIAA0319	9856	broad.mit.edu	37	6	24563603	24563603	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:24563603C>A	uc011djo.1	-	16	2812	c.2575G>T	c.(2575-2577)GCC>TCC	p.A859S	KIAA0319_uc011djp.1_Missense_Mutation_p.A814S|KIAA0319_uc003neh.1_Missense_Mutation_p.A859S|KIAA0319_uc011djq.1_Missense_Mutation_p.A850S|KIAA0319_uc011djr.1_Missense_Mutation_p.A859S|KIAA0319_uc010jpt.1_Missense_Mutation_p.A270S	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	859	Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						TCCGAGTGGGCCCGAATCTTC	0.562													5	37					5.9392e-07	1.13185e-06	0.001168	1	0
BTN1A1	696	broad.mit.edu	37	6	26506979	26506979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:26506979C>T	uc003nif.3	+	4	798	c.778C>T	c.(778-780)CTC>TTC	p.L260F		NM_001732	NP_001723	Q13410	BT1A1_HUMAN	butyrophilin, subfamily 1, member A1 precursor	260	Helical; (Potential).					extracellular region|integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						TCTAGGACTTCTCACCATTGG	0.453													55	212					0	0	0.003610	0	0
TRIM26	7726	broad.mit.edu	37	6	30164463	30164463	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:30164463G>A	uc003npr.2	-	5	804	c.595C>T	c.(595-597)CTG>TTG	p.L199L	TRIM26_uc003nps.2_Silent_p.L199L|TRIM26_uc010jry.2_5'UTR|TRIM26_uc003npt.2_Silent_p.L199L	NM_003449	NP_003440	Q12899	TRI26_HUMAN	tripartite motif-containing 26	199	Potential.						DNA binding|zinc ion binding			ovary(2)|lung(1)	3						CGCTCCCTCAGGAACTGATGA	0.622													7	24					0	0	0.000443	0	0
MICA	4276	broad.mit.edu	37	6	31378342	31378343	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:31378342_31378343CC>TT	uc003ntk.1	+	2	132_133	c.93_94CC>TT	c.(91-96)AACCTC>AATTTC	p.L32F	MICA_uc003rxz.1_5'UTR					RecName: Full=MHC class I polypeptide-related sequence A;          Short=MIC-A; Flags: Precursor;												0		Ovarian(999;0.0253)				TTCGTTATAACCTCACGGTGCT	0.5													4	25					0	0	0.004672	0	0
SKIV2L	6499	broad.mit.edu	37	6	31928448	31928448	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:31928448A>G	uc003nyn.1	+	6	864	c.475A>G	c.(475-477)ATG>GTG	p.M159V	RDBP_uc003nyk.2_5'Flank|RDBP_uc011dot.1_5'Flank|RDBP_uc003nyl.1_5'Flank|RDBP_uc003nym.1_5'Flank|SKIV2L_uc011dou.1_Missense_Mutation_p.M1V|SKIV2L_uc011dov.1_Intron	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	159						nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						CCCAGGGGGGATGGATGAACC	0.522													4	480					0	0	0.001168	0	0
SKIV2L	6499	broad.mit.edu	37	6	31935791	31935791	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:31935791C>T	uc003nyn.1	+	23	3179	c.2790C>T	c.(2788-2790)ACC>ACT	p.T930T	SKIV2L_uc011dou.1_Silent_p.T772T|SKIV2L_uc011dov.1_Silent_p.T737T	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	930						nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						CCATCACCACCAAGGTGCTCC	0.567													33	154					0	0	0.004878	0	0
TNXB	7148	broad.mit.edu	37	6	32065631	32065631	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:32065631C>T	uc003nzl.2	-	2	547	c.345G>A	c.(343-345)AAG>AAA	p.K115K	TNXB_uc010jts.1_Silent_p.K114K|ATF6B_uc003nzm.1_3'UTR	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	115					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCTTGAGCCCCTTCACCAACT	0.627													59	186					0	0	0.003610	0	0
COL11A2	1302	broad.mit.edu	37	6	33144519	33144519	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:33144519G>A	uc003ocx.1	-	26	2322	c.2094C>T	c.(2092-2094)CCC>CCT	p.P698P	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Silent_p.P612P|COL11A2_uc003ocz.1_Silent_p.P591P	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	698	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						TGGTTCCAGGGGGACCTTCCT	0.547													5	39					0	0	0.001984	0	0
WDR46	9277	broad.mit.edu	37	6	33247142	33247142	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:33247142G>A	uc003ods.2	-	15	1788	c.1744C>T	c.(1744-1746)CGG>TGG	p.R582W	WDR46_uc011dra.1_Missense_Mutation_p.R528W	NM_005452	NP_005443	O15213	WDR46_HUMAN	WD repeat domain 46 isoform 1	582											0						AGGCTCTGCCGGACCTTGTCC	0.642													21	90					0	0	0.001523	0	0
PHF1	5252	broad.mit.edu	37	6	33380097	33380097	+	Silent	SNP	T	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:33380097T>G	uc003oeh.2	+	2	293	c.57T>G	c.(55-57)GCT>GCG	p.A19A	PHF1_uc011drh.1_RNA|PHF1_uc003oei.2_Silent_p.A19A|PHF1_uc010jux.2_5'UTR	NM_024165	NP_077084	O43189	PHF1_HUMAN	PHD finger protein 1 isoform b	19					chromatin modification	nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(999;0.0443)				GGGACCCAGCTTCTCCTGCTC	0.612													12	51					0	0	0.001855	0	0
MIR1275	100302123	broad.mit.edu	37	6	33967758	33967758	+	RNA	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:33967758C>T	hsa-mir-1275|MI0006415	-			c.71C>T																				0						TTCCCTCTGCCTTGGGGAAAA	0.517													12	44					0	0	0.001855	0	0
FANCE	2178	broad.mit.edu	37	6	35423925	35423926	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:35423925_35423926CC>TT	uc003oko.1	+	2	835_836	c.650_651CC>TT	c.(649-651)CCC>CTT	p.P217L	FANCE_uc010jvw.1_Missense_Mutation_p.P217L	NM_021922	NP_068741	Q9HB96	FANCE_HUMAN	Fanconi anemia, complementation group E	217	Interaction with FANCC.				DNA repair	nucleoplasm	protein binding			ovary(1)|lung(1)|skin(1)	3						AAGAGGGTCCCCAAAAGATTAC	0.54			N|F|S			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				11	44					0	0	0.004672	0	0
TBC1D22B	55633	broad.mit.edu	37	6	37250023	37250024	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:37250023_37250024CC>TT	uc003onn.2	+	4	630_631	c.484_485CC>TT	c.(484-486)CCC>TTC	p.P162F	TBC1D22B_uc010jwt.2_RNA	NM_017772	NP_060242	Q9NU19	TB22B_HUMAN	TBC1 domain family, member 22B	162						intracellular	Rab GTPase activator activity				0			OV - Ovarian serous cystadenocarcinoma(102;0.241)			GCCCATCATCCCCCTCGTTGCC	0.545													9	49					0	0	0.004672	0	0
DNAH8	1769	broad.mit.edu	37	6	38980032	38980032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:38980032G>A	uc003ooe.1	+	88	13362	c.12762G>A	c.(12760-12762)ATG>ATA	p.M4254I		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TTAATTCAATGAACATATTTC	0.343													11	49					0	0	0.000978	0	0
PGC	5225	broad.mit.edu	37	6	41715031	41715031	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:41715031C>T	uc003ora.1	-	1	91	c.42G>A	c.(40-42)TTG>TTA	p.L14L		NM_002630	NP_002621	P20142	PEPC_HUMAN	progastricsin (pepsinogen C) precursor	14					digestion|proteolysis	extracellular space	aspartic-type endopeptidase activity				0	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;0.000132)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00507)			CTGCTGCCTCCAAGAGCTGGA	0.602													5	43					0	0	0.001168	0	0
TRERF1	55809	broad.mit.edu	37	6	42236589	42236589	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:42236589C>T	uc003osd.2	-	5	1303	c.740G>A	c.(739-741)GGA>GAA	p.G247E	TRERF1_uc011duq.1_Missense_Mutation_p.G247E|TRERF1_uc003osb.2_Missense_Mutation_p.G86E|TRERF1_uc003osc.2_Missense_Mutation_p.G86E|TRERF1_uc003ose.2_Missense_Mutation_p.G247E	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	247	Gln-rich.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			TGGCTGTCCTCCCTGCACTGG	0.602													14	57					0	0	0.004007	0	0
KIAA0240	23506	broad.mit.edu	37	6	42797570	42797570	+	Missense_Mutation	SNP	C	T	T	rs147851446		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:42797570C>T	uc003osn.1	+	6	1650	c.1499C>T	c.(1498-1500)CCC>CTC	p.P500L	KIAA0240_uc003osm.1_Missense_Mutation_p.P500L|KIAA0240_uc011duw.1_Missense_Mutation_p.P500L|KIAA0240_uc003oso.1_Missense_Mutation_p.P500L|KIAA0240_uc003osp.1_Missense_Mutation_p.P500L	NM_015349	NP_056164	Q6AI39	K0240_HUMAN	hypothetical protein LOC23506	500										ovary(1)	1	Colorectal(47;0.196)		Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00524)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.104)			GGACAGATGCCCTTGCAGCAG	0.552													14	79					0	0	0.002450	0	0
CNPY3	10695	broad.mit.edu	37	6	42903379	42903379	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:42903379G>T	uc003ota.3	+	3	792	c.343G>T	c.(343-345)GAG>TAG	p.E115*	CNPY3_uc003osy.2_RNA|CNPY3_uc003osz.2_Nonsense_Mutation_p.E115*|CNPY3_uc003otc.3_5'UTR|CNPY3_uc003otb.3_Nonsense_Mutation_p.E26*	NM_006586	NP_006577	Q9BT09	CNPY3_HUMAN	trinucleotide repeat containing 5 precursor	115	Saposin B-type.				innate immune response	endoplasmic reticulum				ovary(1)	1	Colorectal(47;0.196)		all cancers(41;0.000954)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|OV - Ovarian serous cystadenocarcinoma(102;0.0218)|Kidney(15;0.0388)			CCTGCACAAGGAGAGGACCGG	0.527													12	69					1.5842e-08	3.02628e-08	0.001855	1	0
TMEM63B	55362	broad.mit.edu	37	6	44122487	44122487	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:44122487C>T	uc003owr.2	+	24	2430	c.2366C>T	c.(2365-2367)CCT>CTT	p.P789L	TMEM63B_uc003ows.2_Missense_Mutation_p.P692L|TMEM63B_uc010jyz.2_RNA	NM_018426	NP_060896	Q5T3F8	TM63B_HUMAN	transmembrane protein 63B	789						integral to membrane	nucleotide binding|protein binding			pancreas(2)|central_nervous_system(1)	3	all_cancers(18;1.66e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00309)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0215)			GATGGGGCTCCTGGGAGCTCA	0.602													11	42					0	0	0.001855	0	0
RUNX2	860	broad.mit.edu	37	6	45480128	45480128	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:45480128G>A	uc011dvx.1	+	7	1215	c.1005G>A	c.(1003-1005)GTG>GTA	p.V335V	RUNX2_uc011dvy.1_Silent_p.V335V|RUNX2_uc003oxt.2_Silent_p.V321V	NM_001024630	NP_001019801	Q13950	RUNX2_HUMAN	runt-related transcription factor 2 isoform a	335	Pro/Ser/Thr-rich.				negative regulation of transcription, DNA-dependent|osteoblast differentiation|positive regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3						TCACCGATGTGCCTAGGCGCA	0.587													9	50					0	0	0.004482	0	0
GPR116	221395	broad.mit.edu	37	6	46851899	46851899	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:46851899G>A	uc003oyo.3	-	5	727	c.438C>T	c.(436-438)CTC>CTT	p.L146L	GPR116_uc003oyp.3_Silent_p.L146L|GPR116_uc003oyq.3_Silent_p.L146L|GPR116_uc003oyr.2_Silent_p.L146L	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	146	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			GGTGCCCTGGGAGGAAGACGT	0.498													25	97					0	0	0.003330	0	0
C6orf138	442213	broad.mit.edu	37	6	47846581	47846581	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:47846581C>T	uc011dwm.1	-	3	2033	c.1948G>A	c.(1948-1950)GGT>AGT	p.G650S	C6orf138_uc011dwn.1_Missense_Mutation_p.G414S	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	667	Helical; (Potential).					integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						AGGAGAACACCAAAGCCTGCA	0.478													16	79					0	0	0.003163	0	0
IL17F	112744	broad.mit.edu	37	6	52103660	52103660	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:52103660A>G	uc003pam.1	-	2	193	c.122T>C	c.(121-123)TTC>TCC	p.F41S	IL17F_uc003pal.1_5'UTR	NM_052872	NP_443104	Q96PD4	IL17F_HUMAN	interleukin 17F precursor	41					cartilage development|inflammatory response|lymphotoxin A biosynthetic process|negative regulation of angiogenesis|proteoglycan metabolic process|regulation of granulocyte macrophage colony-stimulating factor biosynthetic process|regulation of interleukin-2 biosynthetic process|regulation of interleukin-6 biosynthetic process|regulation of interleukin-8 biosynthetic process|regulation of transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|cytokine binding|protein homodimerization activity			ovary(1)	1	Lung NSC(77;0.116)					AGGCTTTTGGAAAAAAGTATG	0.483													12	68					0	0	0.001855	0	0
ZNF451	26036	broad.mit.edu	37	6	57012014	57012014	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:57012014C>T	uc003pdm.1	+	10	1355	c.1131C>T	c.(1129-1131)ACC>ACT	p.T377T	ZNF451_uc003pdl.2_Silent_p.T377T|ZNF451_uc003pdn.1_Silent_p.T377T|uc003pdq.1_Intron|ZNF451_uc003pdk.1_Silent_p.T377T	NM_001031623	NP_001026794	Q9Y4E5	ZN451_HUMAN	zinc finger protein 451 isoform 1	377	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung NSC(77;0.145)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			AAACCAGCACCCAAAATCATA	0.423													17	36					0	0	0.004007	0	0
BAI3	577	broad.mit.edu	37	6	69348983	69348983	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:69348983C>A	uc003pev.3	+	3	864	c.416C>A	c.(415-417)CCA>CAA	p.P139Q	BAI3_uc010kak.2_Missense_Mutation_p.P139Q	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	139	CUB.|Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				ACTAATTTCCCAGGATTACAG	0.338													9	35					3.09899e-07	5.91288e-07	0.004482	1	0
KCNQ5	56479	broad.mit.edu	37	6	73787510	73787510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:73787510G>A	uc003pgk.2	+	5	1165	c.818G>A	c.(817-819)GGA>GAA	p.G273E	KCNQ5_uc003pgj.3_Missense_Mutation_p.G273E|KCNQ5_uc011dyh.1_Missense_Mutation_p.G273E|KCNQ5_uc011dyi.1_Missense_Mutation_p.G273E|KCNQ5_uc010kat.2_Missense_Mutation_p.G273E|KCNQ5_uc011dyj.1_Missense_Mutation_p.G273E|KCNQ5_uc011dyk.1_Missense_Mutation_p.G32E	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	273	Helical; Name=Segment S5; (Potential).				protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		TGGTACATAGGATTTTTGGTT	0.348													8	44					0	0	0.004482	0	0
TTK	7272	broad.mit.edu	37	6	80732173	80732173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:80732173G>A	uc003pjc.2	+	11	1315	c.1241G>A	c.(1240-1242)CGA>CAA	p.R414Q	TTK_uc003pjb.3_Missense_Mutation_p.R414Q	NM_003318	NP_003309	P33981	TTK_HUMAN	TTK protein kinase	414					mitotic cell cycle spindle assembly checkpoint|mitotic spindle organization|positive regulation of cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation	spindle	ATP binding|identical protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(4)|stomach(2)|lung(2)|large_intestine(2)|pancreas(1)	11		all_cancers(76;0.00177)|Acute lymphoblastic leukemia(125;1.24e-05)|all_hematologic(105;0.00223)|all_epithelial(107;0.2)		BRCA - Breast invasive adenocarcinoma(397;0.0321)		GAGTTAGCCCGAAAAGTTAAT	0.363													12	43					0	0	0.001855	0	0
BACH2	60468	broad.mit.edu	37	6	90648048	90648048	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:90648048C>T	uc011eab.1	-	8	2667	c.1858G>A	c.(1858-1860)GAT>AAT	p.D620N	BACH2_uc003pnw.2_Missense_Mutation_p.D620N	NM_021813	NP_068585	Q9BYV9	BACH2_HUMAN	BTB and CNC homology 1, basic leucine zipper	620						nucleus	protein dimerization activity|sequence-specific DNA binding			ovary(3)|pancreas(1)|lung(1)|skin(1)	6		all_cancers(76;7.37e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.0063)		BRCA - Breast invasive adenocarcinoma(108;0.0799)		GTGATTTGATCTACAGGAAAA	0.378													9	45					0	0	0.000443	0	0
FUT9	10690	broad.mit.edu	37	6	96652049	96652049	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:96652049C>T	uc003pop.3	+	3	1359	c.1018C>T	c.(1018-1020)CAT>TAT	p.H340Y		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	340	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		GGCTTGCGATCATGTGAAAAG	0.318													15	43					0	0	0.004007	0	0
BEND3	57673	broad.mit.edu	37	6	107391441	107391441	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:107391441C>T	uc003prs.2	-	5	1604	c.954G>A	c.(952-954)GTG>GTA	p.V318V		NM_001080450	NP_001073919	Q5T5X7	BEND3_HUMAN	BEN domain containing 3	318	BEN 1.									ovary(3)	3						CCGTGTCCTTCACCGAGGGGT	0.652													7	25					0	0	0.001984	0	0
COL10A1	1300	broad.mit.edu	37	6	116442033	116442033	+	Missense_Mutation	SNP	C	T	T	rs138141648		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:116442033C>T	uc003pwm.2	-	3	1342	c.1246G>A	c.(1246-1248)GGA>AGA	p.G416R	NT5DC1_uc003pwj.2_Intron|NT5DC1_uc003pwk.2_Intron|NT5DC1_uc003pwl.2_Intron	NM_000493	NP_000484	Q03692	COAA1_HUMAN	type X collagen alpha 1 precursor	416	Triple-helical region.				skeletal system development	collagen	metal ion binding			central_nervous_system(1)	1		all_cancers(87;0.0176)|all_epithelial(87;0.0263)|Colorectal(196;0.234)		all cancers(137;0.0157)|OV - Ovarian serous cystadenocarcinoma(136;0.0325)|GBM - Glioblastoma multiforme(226;0.0446)|Epithelial(106;0.0711)		CCAGGAGGTCCTCCAACTCCA	0.592													19	55					0	0	0.001523	0	0
MAN1A1	4121	broad.mit.edu	37	6	119522418	119522418	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:119522418C>T	uc003pym.1	-	8	1652	c.1210_splice	c.e8+1	p.H404_splice		NM_005907	NP_005898	P33908	MA1A1_HUMAN	mannosidase, alpha, class 1A, member 1						post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum|ER-Golgi intermediate compartment|Golgi membrane|integral to membrane|membrane fraction	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_epithelial(87;0.173)		OV - Ovarian serous cystadenocarcinoma(136;0.0612)|GBM - Glioblastoma multiforme(226;0.0702)|all cancers(137;0.115)		TTCTGACTTACGTTGACCCCA	0.388													15	69					0	0	0.004007	0	0
ARHGAP18	93663	broad.mit.edu	37	6	129963080	129963080	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:129963080G>A	uc003qbr.2	-	2	286	c.197C>T	c.(196-198)TCC>TTC	p.S66F	ARHGAP18_uc011ebw.1_Missense_Mutation_p.S66F	NM_033515	NP_277050	Q8N392	RHG18_HUMAN	Rho GTPase activating protein 18	66					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			ovary(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(136;0.0621)|GBM - Glioblastoma multiforme(226;0.0638)|all cancers(137;0.074)		AGAATCCTGGGAAATTGATCG	0.388													18	72					0	0	0.006122	0	0
TAAR2	9287	broad.mit.edu	37	6	132938515	132938515	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:132938515G>A	uc003qdl.1	-	2	830	c.830C>T	c.(829-831)CCT>CTT	p.P277L	TAAR2_uc010kfr.1_Missense_Mutation_p.P232L	NM_001033080	NP_001028252	Q9P1P5	TAAR2_HUMAN	trace amine associated receptor 2 isoform 1	277	Helical; Name=6; (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(56;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00608)|GBM - Glioblastoma multiforme(226;0.0151)		GAAGAAACAAGGAAACCAACA	0.328													9	24					0	0	0.000673	0	0
BCLAF1	9774	broad.mit.edu	37	6	136599068	136599068	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:136599068G>A	uc003qgx.1	-	4	1204	c.951C>T	c.(949-951)GGC>GGT	p.G317G	BCLAF1_uc003qgw.1_Silent_p.G317G|BCLAF1_uc003qgy.1_Silent_p.G315G|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Silent_p.G315G	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	317					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		ACGAGGAACGGCCCCTAGACT	0.408													6	107					0	0	0.001984	0	0
KIAA1244	57221	broad.mit.edu	37	6	138655216	138655216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:138655216G>A	uc003qhu.2	+	33	5233	c.5233G>A	c.(5233-5235)GAA>AAA	p.E1745K		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	1745					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		TCCTGGAGAGGAAAAGACGAT	0.478													7	38					0	0	0.003080	0	0
ECT2L	345930	broad.mit.edu	37	6	139222119	139222119	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:139222119C>T	uc003qif.1	+	19	2552	c.2449C>T	c.(2449-2451)CTC>TTC	p.L817F	ECT2L_uc011edq.1_Missense_Mutation_p.L671F	NM_001077706	NP_001071174	Q008S8	ECT2L_HUMAN	epithelial cell transforming sequence 2	817					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity				0						CAGCCTTTTCCTCTTCAATGA	0.418													11	26					0	0	0.000673	0	0
UTRN	7402	broad.mit.edu	37	6	144774983	144774983	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:144774983C>T	uc003qkt.2	+	18	2354	c.2262C>T	c.(2260-2262)ATC>ATT	p.I754I	UTRN_uc010khq.1_Silent_p.I754I	NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	754	Interaction with SYNM.|Spectrin 5.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		CTGGACAAATCCTTGTGGAGC	0.353													13	59					0	0	0.001368	0	0
TULP4	56995	broad.mit.edu	37	6	158923850	158923850	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:158923850C>T	uc003qrf.2	+	13	4512	c.3155C>T	c.(3154-3156)TCC>TTC	p.S1052F	TULP4_uc003qrg.2_Intron	NM_020245	NP_064630	Q9NRJ4	TULP4_HUMAN	tubby like protein 4 isoform 1	1052					intracellular signal transduction|response to nutrient	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Breast(66;0.000781)|Ovarian(120;0.0308)|Lung SC(201;0.164)|Prostate(117;0.171)		OV - Ovarian serous cystadenocarcinoma(65;1.64e-18)|BRCA - Breast invasive adenocarcinoma(81;2.67e-05)		CCCGGAGCCTCCCTGGCCCAT	0.716													13	20					0	0	0.002450	0	0
RSPH3	83861	broad.mit.edu	37	6	159420551	159420551	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:159420551C>T	uc003qrx.2	-	1	648	c.458G>A	c.(457-459)CGG>CAG	p.R153Q	RSPH3_uc010kju.2_Missense_Mutation_p.R153Q|RSPH3_uc003qry.1_Missense_Mutation_p.R153Q	NM_031924	NP_114130	Q86UC2	RSPH3_HUMAN	radial spoke 3 homolog	153										ovary(1)|skin(1)	2		Breast(66;0.00519)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;2.36e-16)|BRCA - Breast invasive adenocarcinoma(81;5.92e-06)		GCTCGGGGCCCGAGAGGTGCG	0.662													10	62					0	0	0.000673	0	0
MAP3K4	4216	broad.mit.edu	37	6	161505568	161505568	+	Missense_Mutation	SNP	G	C	C	rs142735217		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:161505568G>C	uc003qtn.2	+	7	2433	c.2291G>C	c.(2290-2292)AGT>ACT	p.S764T	MAP3K4_uc010kkc.1_Missense_Mutation_p.S764T|MAP3K4_uc003qto.2_Missense_Mutation_p.S764T|MAP3K4_uc011efz.1_RNA|MAP3K4_uc011ega.1_Missense_Mutation_p.S217T	NM_005922	NP_005913	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	764					activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			ovary(3)|lung(3)|skin(2)|stomach(1)	9		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		TCTACAGGAAGTTTTTTAGAA	0.408													9	73					0	0	0.000978	0	0
UNC93A	54346	broad.mit.edu	37	6	167717444	167717445	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr6:167717444_167717445CC>TT	uc003qvq.2	+	5	838_839	c.663_664CC>TT	c.(661-666)TTCCTC>TTTTTC	p.L222F	UNC93A_uc003qvr.2_Missense_Mutation_p.L180F	NM_018974	NP_061847	Q86WB7	UN93A_HUMAN	unc-93 homolog A isoform 1	222	Helical; (Potential).					integral to membrane|plasma membrane					0		Breast(66;7.62e-05)|Ovarian(120;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		TAGCTGCGTTCCTCCAACCCAT	0.376													13	59					0	0	0.004672	0	0
MICALL2	79778	broad.mit.edu	37	7	1488346	1488346	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:1488346C>T	uc003skj.3	-	3	391	c.244G>A	c.(244-246)GAG>AAG	p.E82K		NM_182924	NP_891554	Q8IY33	MILK2_HUMAN	MICAL-like 2 isoform 1	82	CH.					cytoplasm|cytoskeleton	zinc ion binding			central_nervous_system(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;6.01e-15)		ACCATGTCCTCGGCATCCAGC	0.642													17	120					0	0	0.001882	0	0
IQCE	23288	broad.mit.edu	37	7	2611180	2611180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:2611180C>T	uc003smo.3	+	4	335	c.151C>T	c.(151-153)CCG>TCG	p.P51S	IQCE_uc010ksm.1_Missense_Mutation_p.P51S|IQCE_uc003sml.1_Missense_Mutation_p.P51S|IQCE_uc011jvy.1_Missense_Mutation_p.P35S|IQCE_uc011jvz.1_5'UTR|IQCE_uc003smk.3_Missense_Mutation_p.P35S|IQCE_uc003smn.3_5'UTR	NM_152558	NP_689771	Q6IPM2	IQCE_HUMAN	IQ motif containing E isoform 1	51											0		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;1.23e-13)		TCTCTCTAAGCCGAGAAAAGT	0.577													19	101					0	0	0.001216	0	0
SDK1	221935	broad.mit.edu	37	7	4091420	4091420	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:4091420G>A	uc003smx.2	+	19	3008	c.2869G>A	c.(2869-2871)GGG>AGG	p.G957R	SDK1_uc010kso.2_Missense_Mutation_p.G233R	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	957	Fibronectin type-III 3.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CCCTGGGGACGGGCCTCCCAG	0.532													28	132					0	0	0.002096	0	0
RNF216	54476	broad.mit.edu	37	7	5780684	5780684	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:5780684C>T	uc003soy.1	-	4	983	c.793G>A	c.(793-795)GAG>AAG	p.E265K	RNF216_uc010ksz.1_5'UTR|RNF216_uc010kta.1_Intron|RNF216_uc011jwj.1_Intron|RNF216_uc003sox.1_Missense_Mutation_p.E322K	NM_207116	NP_996999	Q9NWF9	RN216_HUMAN	ring finger protein 216 isoform b	265					apoptosis|interspecies interaction between organisms|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination|regulation of defense response to virus by host|regulation of interferon-beta production	cytoplasm|nucleus|nucleus	ligase activity|protein binding|protein binding|zinc ion binding			ovary(3)|breast(2)	5		Ovarian(82;0.07)		UCEC - Uterine corpus endometrioid carcinoma (126;0.135)|OV - Ovarian serous cystadenocarcinoma(56;2.69e-13)		AAATTGGGCTCTTGAGATTCT	0.448													25	73					0	0	0.003330	0	0
EIF2AK1	27102	broad.mit.edu	37	7	6080809	6080809	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:6080809G>A	uc003spp.2	-	9	979	c.833C>T	c.(832-834)TCC>TTC	p.S278F	EIF2AK1_uc003spq.2_Missense_Mutation_p.S277F|EIF2AK1_uc011jwm.1_Missense_Mutation_p.S154F|EIF2AK1_uc003spr.1_Missense_Mutation_p.S70F	NM_014413	NP_055228	Q9BQI3	E2AK1_HUMAN	eukaryotic translation initiation factor 2-alpha	278	Protein kinase.				negative regulation of hemoglobin biosynthetic process|negative regulation of translational initiation by iron|protein autophosphorylation|response to external stimulus|response to stress	cytoplasm	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|heme binding|protein homodimerization activity			upper_aerodigestive_tract(1)|stomach(1)|lung(1)|central_nervous_system(1)	4		Ovarian(82;0.0423)		UCEC - Uterine corpus endometrioid carcinoma (126;0.106)|OV - Ovarian serous cystadenocarcinoma(56;5.22e-14)		AAAGATAATGGATGAGCTGCT	0.313													18	116					0	0	0.001216	0	0
C7orf26	79034	broad.mit.edu	37	7	6631409	6631409	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:6631409A>T	uc003sqo.1	+	2	325	c.325A>T	c.(325-327)AGC>TGC	p.S109C	C7orf26_uc003sqp.1_Missense_Mutation_p.S90C|C7orf26_uc003sqq.1_5'UTR	NM_024067	NP_076972	Q96N11	CG026_HUMAN	hypothetical protein LOC79034	109										ovary(1)	1		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)		AGCCGATGACAGCCGGATGAG	0.502													22	127					0	0	0.001882	0	0
GLCCI1	113263	broad.mit.edu	37	7	8124620	8124620	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:8124620A>C	uc003srk.2	+	7	1830	c.1271A>C	c.(1270-1272)GAG>GCG	p.E424A		NM_138426	NP_612435	Q86VQ1	GLCI1_HUMAN	glucocorticoid induced transcript 1	424											0		Ovarian(82;0.0608)		UCEC - Uterine corpus endometrioid carcinoma (126;0.206)		GAGGGATGTGAGCGAGTGAAG	0.453													13	65					0	0	0.002450	0	0
AHR	196	broad.mit.edu	37	7	17379730	17379731	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:17379730_17379731CC>TT	uc011jxz.1	+	10	2894_2895	c.2281_2282CC>TT	c.(2281-2283)CCT>TTT	p.P761F	AHR_uc003stt.3_RNA	NM_001621	NP_001612	P35869	AHR_HUMAN	aryl hydrocarbon receptor precursor	761					apoptosis|blood vessel development|cell cycle|regulation of B cell proliferation|response to stress|transcription from RNA polymerase II promoter|xenobiotic metabolic process	cytosolic aryl hydrocarbon receptor complex|transcription factor complex	Hsp90 protein binding|ligand-dependent nuclear receptor activity|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			urinary_tract(1)|kidney(1)|pancreas(1)	3	Lung NSC(10;0.0392)|all_lung(11;0.0754)					CATAATAACTCCTCAGACATGT	0.47													13	96					0	0	0.004672	0	0
PDE1C	5137	broad.mit.edu	37	7	31904663	31904663	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:31904663C>A	uc003tcm.1	-	7	1112	c.643G>T	c.(643-645)GCC>TCC	p.A215S	PDE1C_uc003tcn.1_Missense_Mutation_p.A215S|PDE1C_uc003tco.1_Missense_Mutation_p.A275S|PDE1C_uc003tcr.2_Missense_Mutation_p.A215S|PDE1C_uc003tcs.2_Missense_Mutation_p.A215S	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	215	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			ACTTCCAGGGCCTCCACAAAT	0.438													13	52					2.32078e-09	4.43867e-09	0.003163	1	0
DPY19L2P1	554236	broad.mit.edu	37	7	35131497	35131497	+	Silent	SNP	G	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:35131497G>T	uc003teq.1	-	20	2196	c.1089C>A	c.(1087-1089)CCC>CCA	p.P363P	DPY19L2P1_uc003tep.1_RNA|DPY19L2P1_uc010kwz.1_RNA					RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						GATTCACAATGGGATGAAGTG	0.413													6	109					0.00448238	0.00848147	0.004482	1	0
ANLN	54443	broad.mit.edu	37	7	36466575	36466575	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:36466575C>T	uc003tff.2	+	20	3025	c.2821C>T	c.(2821-2823)CTT>TTT	p.L941F	ANLN_uc011kaz.1_Missense_Mutation_p.L853F|ANLN_uc003tfg.2_Missense_Mutation_p.L904F|ANLN_uc010kxe.2_Missense_Mutation_p.L903F	NM_018685	NP_061155	Q9NQW6	ANLN_HUMAN	anillin, actin binding protein	941	Localization to the cleavage furrow.				cytokinesis|mitosis|regulation of exit from mitosis|septin ring assembly	actomyosin contractile ring|nucleus	actin binding			ovary(2)|skin(1)	3						CAACTTCGCCCTTGTTGGATC	0.393													27	63					0	0	0.001061	0	0
PKD1L1	168507	broad.mit.edu	37	7	47814750	47814750	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:47814750C>T	uc003tny.1	-	57	8541	c.8541G>A	c.(8539-8541)AAG>AAA	p.K2847K		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2847	Cytoplasmic (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						CTCAGAAGTCCTTGATGTCTG	0.249													51	112					0	0	0.003610	0	0
ABCA13	154664	broad.mit.edu	37	7	48431685	48431685	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:48431685C>T	uc003toq.2	+	38	11847	c.11822C>T	c.(11821-11823)TCC>TTC	p.S3941F	ABCA13_uc010kys.1_Missense_Mutation_p.S1015F|ABCA13_uc003tos.1_Missense_Mutation_p.S767F|ABCA13_uc010kyt.1_RNA	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	3941	ABC transporter 1.				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CTCTTTGCTTCCATAAAGGCG	0.527													24	68					0	0	0.004656	0	0
DDC	1644	broad.mit.edu	37	7	50571701	50571701	+	Silent	SNP	G	A	A	rs117436059	byFrequency	TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:50571701G>A	uc003tpf.3	-	7	857	c.771C>T	c.(769-771)GTC>GTT	p.V257V	DDC_uc010kza.2_Silent_p.V172V|DDC_uc003tpg.3_Silent_p.V257V	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	257					cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	AGATAGGACCGACTTCTAAGA	0.453													27	62					0	0	0.002445	0	0
FGL2	10875	broad.mit.edu	37	7	76828889	76828889	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:76828889C>T	uc003ugb.2	-	1	262	c.222G>A	c.(220-222)AGG>AGA	p.R74R	CCDC146_uc003ufz.1_Intron|CCDC146_uc003uga.2_Intron	NM_006682	NP_006673	Q14314	FGL2_HUMAN	fibrinogen-like 2 precursor	74	Potential.				signal transduction	fibrinogen complex	receptor binding			skin(2)	2						CCTCCTCGATCCTGCTGAATT	0.502													24	112					0	0	0.003954	0	0
PCLO	27445	broad.mit.edu	37	7	82582446	82582446	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:82582446G>A	uc003uhx.2	-	5	8112	c.7823C>T	c.(7822-7824)TCA>TTA	p.S2608L	PCLO_uc003uhv.2_Missense_Mutation_p.S2608L|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2539					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTTGGAGGGTGATCCCAAGGG	0.433													37	202					0	0	0.001485	0	0
ABCB1	5243	broad.mit.edu	37	7	87196208	87196208	+	Silent	SNP	T	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:87196208T>C	uc003uiz.1	-	7	841	c.423A>G	c.(421-423)GGA>GGG	p.G141G	ABCB1_uc011khc.1_Intron	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	141	ABC transmembrane type-1 1.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	GTATTTGTCTTCCAGCTGCCA	0.433													16	47					0	0	0.004007	0	0
ADAM22	53616	broad.mit.edu	37	7	87746124	87746124	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:87746124C>T	uc003ujn.2	+	7	681	c.602C>T	c.(601-603)CCA>CTA	p.P201L	ADAM22_uc003uji.1_Missense_Mutation_p.P200L|ADAM22_uc003ujj.1_Missense_Mutation_p.P201L|ADAM22_uc003ujk.1_Missense_Mutation_p.P201L|ADAM22_uc003ujl.1_Missense_Mutation_p.P201L|ADAM22_uc003ujm.2_Missense_Mutation_p.P201L|ADAM22_uc003ujo.2_Missense_Mutation_p.P201L|ADAM22_uc003ujp.1_Missense_Mutation_p.P253L	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	201					cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			GATGATCTTCCATCTGGTATG	0.318													7	32					0	0	0.001984	0	0
DYNC1I1	1780	broad.mit.edu	37	7	95709713	95709713	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:95709713C>T	uc003uoc.3	+	16	2017	c.1740C>T	c.(1738-1740)GCC>GCT	p.A580A	DYNC1I1_uc003uod.3_Silent_p.A563A|DYNC1I1_uc003uob.2_Silent_p.A543A|DYNC1I1_uc003uoe.3_Silent_p.A560A|DYNC1I1_uc010lfl.2_Silent_p.A569A	NM_004411	NP_004402	O14576	DC1I1_HUMAN	dynein, cytoplasmic 1, intermediate chain 1	580	WD 7.				vesicle transport along microtubule	condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|perinuclear region of cytoplasm|spindle pole|vesicle	microtubule binding|microtubule motor activity			ovary(3)|kidney(1)	4	all_cancers(62;9.39e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.165)|all_lung(186;0.191)		STAD - Stomach adenocarcinoma(171;0.0957)			GGGCATCCGCCCTAAACCGTG	0.463													44	82					0	0	0.003610	0	0
LRCH4	4034	broad.mit.edu	37	7	100173348	100173348	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:100173348G>C	uc003uvj.2	-	17	1887	c.1834C>G	c.(1834-1836)CGA>GGA	p.R612G	uc003uvh.2_5'Flank|LRCH4_uc010lgz.2_RNA|LRCH4_uc003uvi.2_RNA|LRCH4_uc011kjw.1_Missense_Mutation_p.R139G	NM_002319	NP_002310	O75427	LRCH4_HUMAN	leucine-rich repeats and calponin homology (CH)	612	CH.				nervous system development	PML body	protein binding			large_intestine(1)|ovary(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CCCATTTTTCGACAGGCTTCT	0.542													6	242					0	0	0.003080	0	0
LRCH4	4034	broad.mit.edu	37	7	100174718	100174718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:100174718G>A	uc003uvj.2	-	12	1408	c.1355C>T	c.(1354-1356)GCC>GTC	p.A452V	LRCH4_uc010lgz.2_Intron|LRCH4_uc003uvi.2_RNA|LRCH4_uc011kjw.1_5'UTR|LRCH4_uc011kjx.1_RNA	NM_002319	NP_002310	O75427	LRCH4_HUMAN	leucine-rich repeats and calponin homology (CH)	452					nervous system development	PML body	protein binding			large_intestine(1)|ovary(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CTTGTGCATGGCTTGAGTGGA	0.602													9	71					0	0	0.000673	0	0
ORC5L	5001	broad.mit.edu	37	7	103801596	103801597	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:103801596_103801597GG>AA	uc003vcb.2	-	12	1183_1184	c.1072_1073CC>TT	c.(1072-1074)CCA>TTA	p.P358L	ORC5L_uc011klp.1_Missense_Mutation_p.P226L	NM_002553	NP_002544	O43913	ORC5_HUMAN	origin recognition complex subunit 5 isoform 1	358					cell cycle checkpoint|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	cytoplasm|nuclear origin of replication recognition complex|nucleoplasm	ATP binding|DNA replication origin binding|identical protein binding				0						TCTGTCTAGTGGAAATGGTTTT	0.342													21	92					0	0	0.004672	0	0
CDHR3	222256	broad.mit.edu	37	7	105667134	105667134	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:105667134G>A	uc003vdl.3	+	16	2373	c.2265G>A	c.(2263-2265)AAG>AAA	p.K755K	CDHR3_uc003vdk.2_Missense_Mutation_p.E187K|CDHR3_uc003vdm.3_Silent_p.K742K|CDHR3_uc011klt.1_Silent_p.K667K|CDHR3_uc003vdn.2_Missense_Mutation_p.E256K	NM_152750	NP_689963	Q6ZTQ4	CDHR3_HUMAN	hypothetical protein LOC222256 precursor	755	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						ATAGGACAAAGAAAGGAGGTA	0.458													8	64					0	0	0.004482	0	0
NAMPT	10135	broad.mit.edu	37	7	105894856	105894856	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:105894856A>T	uc003vdq.2	-	9	1492	c.1184T>A	c.(1183-1185)TTG>TAG	p.L395*		NM_005746	NP_005737	P43490	NAMPT_HUMAN	nicotinamide phosphoribosyltransferase	395					cell-cell signaling|NAD biosynthetic process|nicotinamide metabolic process|positive regulation of cell proliferation|positive regulation of nitric-oxide synthase biosynthetic process|signal transduction|water-soluble vitamin metabolic process	cytosol	cytokine activity|nicotinamide phosphoribosyltransferase activity|nicotinate phosphoribosyltransferase activity|nicotinate-nucleotide diphosphorylase (carboxylating) activity			large_intestine(1)	1						GGAACAATTCAAGAGATCTCT	0.373													18	91					0	0	0.000958	0	0
NRCAM	4897	broad.mit.edu	37	7	107834800	107834800	+	Silent	SNP	A	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:107834800A>T	uc003vfb.2	-	16	2007	c.1536T>A	c.(1534-1536)ATT>ATA	p.I512I	NRCAM_uc003vfc.2_Silent_p.I506I|NRCAM_uc011kmk.1_Silent_p.I507I|NRCAM_uc003vfd.2_Silent_p.I488I|NRCAM_uc003vfe.2_Silent_p.I488I	NM_001037132	NP_001032209	Q92823	NRCAM_HUMAN	neuronal cell adhesion molecule isoform A	512	Ig-like 5.|Extracellular (Potential).			I -> IKDATWIVKEI (in Ref. 1; AAC50765).	angiogenesis|axon guidance|axonal fasciculation|cell-cell adhesion|central nervous system development|clustering of voltage-gated sodium channels|neuron migration|positive regulation of neuron differentiation|regulation of axon extension|synapse assembly	external side of plasma membrane|integral to plasma membrane	ankyrin binding			ovary(3)|breast(2)	5						GGGCCACAGGAATTTCCAAAG	0.358													35	64					0	0	0.002836	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113522155	113522155	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:113522155C>T	uc010ljy.1	-	3	936	c.905G>A	c.(904-906)CGA>CAA	p.R302Q		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	302					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TTTTACATTTCGATTACTGGC	0.338													18	92					0	0	0.004990	0	0
MDFIC	29969	broad.mit.edu	37	7	114563024	114563024	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:114563024C>G	uc003vhf.2	+	2	526	c.263C>G	c.(262-264)TCC>TGC	p.S88C	MDFIC_uc003vhg.2_RNA	NM_199072	NP_951038	Q9P1T7	MDFIC_HUMAN	MyoD family inhibitor domain containing protein	Error:Variant_position_missing_in_Q9P1T7_after_alignment					activation of JUN kinase activity|interspecies interaction between organisms|negative regulation of protein import into nucleus|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|regulation of Wnt receptor signaling pathway|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleolus|nucleolus|nucleus	cyclin binding|Tat protein binding			ovary(1)	1						AGCCCTTCCTCCGTGCGCCCT	0.632													3	12					0	0	0.000602	0	0
CFTR	1080	broad.mit.edu	37	7	117180347	117180347	+	Missense_Mutation	SNP	C	T	T	rs144720913		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:117180347C>T	uc003vjd.2	+	8	1195	c.1063C>T	c.(1063-1065)CCC>TCC	p.P355S	CFTR_uc011knq.1_5'UTR	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	355	Cytoplasmic (Potential).|ABC transmembrane type-1 1.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding	p.P355S(1)		central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TCGGCAATTTCCCTGGGCTGT	0.403									Cystic_Fibrosis				17	93					0	0	0.004007	0	0
FLNC	2318	broad.mit.edu	37	7	128498224	128498224	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:128498224C>T	uc003vnz.3	+	47	8152	c.7943C>T	c.(7942-7944)GCC>GTC	p.A2648V	FLNC_uc003voa.3_Missense_Mutation_p.A2615V	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2648	Interaction with INPPL1.|Filamin 24.|Self-association site, tail (By similarity).				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CTGTCCCAGGCCTTCGTGGGC	0.652													7	52					0	0	0.001855	0	0
AHCYL2	23382	broad.mit.edu	37	7	129019555	129019555	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:129019555C>T	uc011kov.1	+	2	494	c.440C>T	c.(439-441)TCC>TTC	p.S147F	AHCYL2_uc003vot.2_Missense_Mutation_p.S146F|AHCYL2_uc003vov.2_Missense_Mutation_p.S44F|AHCYL2_uc011kow.1_Missense_Mutation_p.S45F|AHCYL2_uc011kox.1_Missense_Mutation_p.S44F	NM_015328	NP_056143	Q96HN2	SAHH3_HUMAN	S-adenosylhomocysteine hydrolase-like 2 isoform	147					one-carbon metabolic process		adenosylhomocysteinase activity			ovary(2)	2						TTGTCTCGTTCCATTTCTCAG	0.458													6	51					0	0	0.001984	0	0
SLC35B4	84912	broad.mit.edu	37	7	133979702	133979702	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:133979702G>A	uc003vrn.2	-	10	1203	c.879C>T	c.(877-879)ACC>ACT	p.T293T	SLC35B4_uc010lmk.2_Silent_p.T157T|SLC35B4_uc010lml.1_Intron	NM_032826	NP_116215	Q969S0	S35B4_HUMAN	solute carrier family 35, member B4	293	Helical; (Potential).					Golgi membrane|integral to membrane	UDP-N-acetylglucosamine transmembrane transporter activity|UDP-xylose transmembrane transporter activity			skin(1)	1						AGTGCCACAGGGTGAAGGGGT	0.522													40	118					0	0	0.001706	0	0
NUP205	23165	broad.mit.edu	37	7	135328088	135328088	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:135328088C>T	uc003vsw.2	+	39	5572	c.5541C>T	c.(5539-5541)CCC>CCT	p.P1847P	NUP205_uc003vsx.2_RNA	NM_015135	NP_055950	Q92621	NU205_HUMAN	nucleoporin 205kDa	1847					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6						AGCAGCTTCCCCCAGATGAGA	0.423													7	40					0	0	0.001984	0	0
BRAF	673	broad.mit.edu	37	7	140453155	140453155	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:140453155C>T	uc003vwc.3	-	15	1841	c.1780G>A	c.(1780-1782)GAT>AAT	p.D594N		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	594	Protein kinase.		D -> G (in NHL).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.D594G(27)|p.D594N(7)|p.D594K(3)|p.D594V(2)|p.D594_T599del(1)|p.D594E(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	AGACCAAAATCACCTATTTTT	0.378		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				18	71					0	0	0.001882	0	0
TAS2R38	5726	broad.mit.edu	37	7	141673076	141673076	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:141673076C>T	uc003vwx.1	-	1	498	c.414G>A	c.(412-414)AGG>AGA	p.R138R		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	138	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					GGGAGATCTTCCTGGAGACCC	0.517													8	24					0	0	0.003080	0	0
MGAM	8972	broad.mit.edu	37	7	141739966	141739966	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:141739966G>A	uc003vwy.2	+	20	2422	c.2368G>A	c.(2368-2370)GAG>AAG	p.E790K		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	790	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GTATGACTACGAGACTGTAAG	0.418													7	16					0	0	0.004482	0	0
TRYX3	136541	broad.mit.edu	37	7	141955402	141955402	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:141955402G>A	uc003vxb.2	-	2	452	c.132C>T	c.(130-132)GTC>GTT	p.V44V	TRYX3_uc003vxc.3_Silent_p.V44V	NM_001001317	NP_001001317	Q8IYP2	PRS58_HUMAN	trypsin X3 precursor	44	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0	Melanoma(164;0.0272)					GGTGGATCAGGACTCCAGCGC	0.493													23	57					0	0	0.002299	0	0
CNTNAP2	26047	broad.mit.edu	37	7	148080826	148080826	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:148080826C>T	uc003weu.1	+	22	4077	c.3561C>T	c.(3559-3561)ATC>ATT	p.I1187I	CNTNAP2_uc003wev.1_5'UTR	NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1187	Laminin G-like 4.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TCAACCAGATCGCCCCTCTCA	0.552										HNSCC(39;0.1)			10	54					0	0	0.001368	0	0
CNTNAP2	26047	broad.mit.edu	37	7	148112556	148112556	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:148112556C>T	uc003weu.1	+	24	4360	c.3844C>T	c.(3844-3846)CTG>TTG	p.L1282L	CNTNAP2_uc003wev.1_Silent_p.L59L	NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1282	Helical; (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CCTGGTCTTCCTGATCCGGTA	0.582										HNSCC(39;0.1)			9	53					0	0	0.000443	0	0
KCNH2	3757	broad.mit.edu	37	7	150648678	150648678	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:150648678G>A	uc003wic.2	-	7	1816	c.1803C>T	c.(1801-1803)GGC>GGT	p.G601G	KCNH2_uc003wib.2_Silent_p.G261G|KCNH2_uc011kux.1_Silent_p.G505G|KCNH2_uc003wid.2_Silent_p.G261G|KCNH2_uc003wie.2_Silent_p.G601G	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	601	Extracellular (Potential).		G -> S (in LQT2).		blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	GGCCGCCCAGGCCGCTGCTGT	0.607													26	58					0	0	0.005443	0	0
ASB10	136371	broad.mit.edu	37	7	150873298	150873298	+	Silent	SNP	G	A	A	rs138510080		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:150873298G>A	uc003wjm.1	-	5	1566	c.1440C>T	c.(1438-1440)TCC>TCT	p.S480S	ASB10_uc003wjl.1_Silent_p.S442S|ASB10_uc003wjn.1_Silent_p.S420S	NM_001142459	NP_001135931	Q8WXI3	ASB10_HUMAN	ankyrin repeat and SOCS box-containing 10	435	SOCS box.				intracellular signal transduction						0			OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCTCCAGGTGGGAGCGGAGCG	0.657													8	50					0	0	0.004482	0	0
NUB1	51667	broad.mit.edu	37	7	151046271	151046271	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:151046271A>G	uc003wjx.2	+	3	307	c.302A>G	c.(301-303)TAT>TGT	p.Y101C	NUB1_uc011kvi.1_Missense_Mutation_p.Y101C|NUB1_uc003wjv.2_RNA|NUB1_uc003wjw.2_Missense_Mutation_p.Y77C|NUB1_uc010lqb.2_RNA|NUB1_uc003wjy.2_RNA	NM_016118	NP_057202	Q9Y5A7	NUB1_HUMAN	NEDD8 ultimate buster-1	77					positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|response to interferon-gamma|response to tumor necrosis factor|ubiquitin-dependent protein catabolic process	nucleus	protein binding				0			OV - Ovarian serous cystadenocarcinoma(82;0.00569)	UCEC - Uterine corpus endometrioid carcinoma (81;0.172)		AATGACAATTATAGAACAACG	0.373													27	129					0	0	0.001061	0	0
DLGAP2	9228	broad.mit.edu	37	8	1626478	1626478	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:1626478G>A	uc003wpl.2	+	9	2244	c.2147G>A	c.(2146-2148)GGC>GAC	p.G716D	DLGAP2_uc003wpm.2_Missense_Mutation_p.G702D	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	795					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		GAGGACAAAGGCCTTCAGTTC	0.612													13	38					0	0	0.001855	0	0
CSMD1	64478	broad.mit.edu	37	8	3200828	3200828	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:3200828G>A	uc011kwk.1	-	23	4012	c.3622C>T	c.(3622-3624)CTC>TTC	p.L1208F	CSMD1_uc011kwj.1_Missense_Mutation_p.L600F|CSMD1_uc003wqe.2_Missense_Mutation_p.L364F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1208	Extracellular (Potential).|CUB 7.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GTATAGGTGAGTTGAAAACCT	0.373													14	64					0	0	0.002450	0	0
SGCZ	137868	broad.mit.edu	37	8	14412356	14412356	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:14412356C>T	uc003wwq.2	-	2	779	c.119G>A	c.(118-120)GGA>GAA	p.G40E	SGCZ_uc010lss.2_Missense_Mutation_p.G27E	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	27	Cytoplasmic (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		TCCATAAATTCCCACTGGGTA	0.368													28	166					0	0	0.001512	0	0
DOK2	9046	broad.mit.edu	37	8	21767095	21767096	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:21767095_21767096AG>TA	uc003wzy.1	-	5	1058_1059	c.965_966CT>TA	c.(964-966)CCT>CTA	p.P322L	DOK2_uc003wzx.1_Missense_Mutation_p.P322L|DOK2_uc003wzz.1_Missense_Mutation_p.P168L|DOK2_uc010lth.1_Missense_Mutation_p.P168L	NM_003974	NP_003965	O60496	DOK2_HUMAN	docking protein 2	322	Pro-rich.				blood coagulation|leukocyte migration	cytosol	identical protein binding|insulin receptor binding				0				Colorectal(74;0.0145)|COAD - Colon adenocarcinoma(73;0.0608)		CCAGGAGCTGAGGAGGGACTGC	0.653													17	67					0	0	0.004672	0	0
HR	55806	broad.mit.edu	37	8	21982912	21982912	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:21982912G>A	uc003xas.2	-	5	2327	c.1662C>T	c.(1660-1662)CTC>CTT	p.L554L	HR_uc003xat.2_Silent_p.L554L	NM_005144	NP_005135	O43593	HAIR_HUMAN	hairless protein isoform a	554							DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|ovary(1)	2		Breast(100;0.000162)|Acute lymphoblastic leukemia(644;0.0775)|Prostate(55;0.116)		KIRC - Kidney renal clear cell carcinoma(542;1.19e-05)|BRCA - Breast invasive adenocarcinoma(99;3.56e-05)|Colorectal(74;0.00191)|COAD - Colon adenocarcinoma(73;0.0615)|READ - Rectum adenocarcinoma(644;0.1)		GGTGCTTGGCGAGGCCTGTGC	0.687													6	19					0	0	0.001984	0	0
ADAM28	10863	broad.mit.edu	37	8	24167700	24167700	+	Silent	SNP	G	A	A	rs150620720		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:24167700G>A	uc003xdy.2	+	4	335	c.252G>A	c.(250-252)ACG>ACA	p.T84T	ADAM28_uc003xdx.2_Silent_p.T84T|ADAM28_uc011kzz.1_5'UTR|ADAM28_uc011laa.1_RNA	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	84					proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		CAGGCTACACGGAAACATATT	0.398													10	18					0	0	0.000443	0	0
UNC5D	137970	broad.mit.edu	37	8	35542226	35542226	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:35542226G>A	uc003xjr.1	+	6	1206	c.878G>A	c.(877-879)GGA>GAA	p.G293E	UNC5D_uc003xjs.1_Missense_Mutation_p.G288E|UNC5D_uc003xjt.1_Missense_Mutation_p.G62E	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	293	TSP type-1 1.|Extracellular (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		TTTTGTGAGGGAATGTCAGTG	0.502													22	120					0	0	0.002299	0	0
ADAM18	8749	broad.mit.edu	37	8	39564383	39564383	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:39564383C>T	uc003xni.2	+	18	1977	c.1977C>T	c.(1975-1977)TCC>TCT	p.S659S	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Silent_p.S635S	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	659	Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			AGTTTGGTTCCCCAGGGGGTA	0.318													18	92					0	0	0.002299	0	0
ANK1	286	broad.mit.edu	37	8	41552702	41552702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:41552702C>T	uc003xok.2	-	27	3192	c.3108G>A	c.(3106-3108)ATG>ATA	p.M1036I	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Missense_Mutation_p.M352I|ANK1_uc003xoi.2_Missense_Mutation_p.M1036I|ANK1_uc003xoj.2_Missense_Mutation_p.M1036I|ANK1_uc003xol.2_Missense_Mutation_p.M1036I|ANK1_uc003xom.2_Missense_Mutation_p.M1077I	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1036					axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TACCTTCGTCCATCCCGTTGA	0.602													39	158					0	0	0.002222	0	0
ANK1	286	broad.mit.edu	37	8	41584783	41584783	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:41584783C>T	uc003xok.2	-	5	495	c.411G>A	c.(409-411)CAG>CAA	p.Q137Q	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoi.2_Silent_p.Q137Q|ANK1_uc003xoj.2_Silent_p.Q137Q|ANK1_uc003xol.2_Silent_p.Q137Q|ANK1_uc003xom.2_Silent_p.Q170Q	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	137	ANK 3.|89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TGGCTACATTCTGGTTAGCTC	0.463													11	42					0	0	0.000978	0	0
POTEA	340441	broad.mit.edu	37	8	43157198	43157198	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:43157198C>T	uc003xpz.1	+	5	821	c.778C>T	c.(778-780)CAA>TAA	p.Q260*	POTEA_uc003xqa.1_Intron	NM_001005365	NP_001005365	Q6S8J7	POTEA_HUMAN	POTE ankyrin domain family, member A isoform 2	260										ovary(1)	1						TGTATTTTCTCAAGATGTATT	0.318													18	85					0	0	0.000958	0	0
PREX2	80243	broad.mit.edu	37	8	69050737	69050737	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:69050737G>A	uc003xxv.1	+	33	4099	c.4072G>A	c.(4072-4074)GAA>AAA	p.E1358K		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1358					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						ATCAGAAGAGGAACCTCTGGT	0.289													12	70					0	0	0.001855	0	0
KCNB2	9312	broad.mit.edu	37	8	73480030	73480030	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:73480030C>T	uc003xzb.2	+	2	649	c.61C>T	c.(61-63)CCT>TCT	p.P21S		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	21	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			ACTTTCCCTTCCTCCAGAGCC	0.522													14	70					0	0	0.001855	0	0
CNBD1	168975	broad.mit.edu	37	8	88249162	88249162	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:88249162G>A	uc003ydy.2	+	6	641	c.593G>A	c.(592-594)GGA>GAA	p.G198E		NM_173538	NP_775809	Q8NA66	CNBD1_HUMAN	cyclic nucleotide binding domain containing 1	198										ovary(3)	3						GCAAATGATGGATTTTATGTA	0.348													21	95					0	0	0.002780	0	0
ESRP1	54845	broad.mit.edu	37	8	95680313	95680314	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:95680313_95680314GG>AA	uc003ygq.3	+	10	1251_1252	c.1068_1069GG>AA	c.(1066-1071)AAGGAA>AAAAAA	p.E357K	ESRP1_uc003ygr.3_Missense_Mutation_p.E357K|ESRP1_uc003ygs.3_Missense_Mutation_p.E357K|ESRP1_uc003ygt.3_Missense_Mutation_p.E357K|ESRP1_uc003ygu.3_Missense_Mutation_p.E357K|ESRP1_uc003ygv.2_Missense_Mutation_p.E197K|ESRP1_uc003ygw.2_Missense_Mutation_p.E197K	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	357	RRM 2.				mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						CTGGGGGAAAGGAAGGCATCCT	0.525													83	428					0	0	0.004672	0	0
VPS13B	157680	broad.mit.edu	37	8	100287445	100287445	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:100287445C>T	uc003yiv.2	+	19	2898	c.2787C>T	c.(2785-2787)ATC>ATT	p.I929I	VPS13B_uc003yiw.2_Silent_p.I929I|VPS13B_uc003yiu.1_Silent_p.I929I|VPS13B_uc003yix.1_Silent_p.I400I	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	929					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			CCTTCACAATCCAAGTTCCAC	0.398													24	107					0	0	0.002096	0	0
VPS13B	157680	broad.mit.edu	37	8	100880528	100880528	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:100880528G>A	uc003yiv.2	+	59	11413	c.11302G>A	c.(11302-11304)GGT>AGT	p.G3768S	VPS13B_uc003yiw.2_Missense_Mutation_p.G3743S	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	3768					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TGCAATTGCTGGTATAGTTGA	0.478													13	39					0	0	0.002450	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110530696	110530696	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:110530696T>C	uc003yne.2	+	73	12094	c.11990T>C	c.(11989-11991)ATT>ACT	p.I3997T		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3997	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GAAATAGAGATTGGAGACCCT	0.388										HNSCC(38;0.096)			8	34					0	0	0.000443	0	0
CSMD3	114788	broad.mit.edu	37	8	113318319	113318319	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:113318319C>T	uc003ynu.2	-	51	8147	c.7988G>A	c.(7987-7989)CGA>CAA	p.R2663Q	CSMD3_uc003yns.2_Missense_Mutation_p.R1865Q|CSMD3_uc003ynt.2_Missense_Mutation_p.R2623Q|CSMD3_uc011lhx.1_Missense_Mutation_p.R2559Q	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2663	Extracellular (Potential).|Sushi 15.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GGATGACAATCGATATCCATC	0.418										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			26	83					0	0	0.002096	0	0
FER1L6	654463	broad.mit.edu	37	8	125103762	125103762	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:125103762G>A	uc003yqw.2	+	34	4696	c.4490G>A	c.(4489-4491)GGG>GAG	p.G1497E	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1497	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			TTTCACCCTGGGAAAATACAG	0.458													13	56					0	0	0.001855	0	0
ADCY8	114	broad.mit.edu	37	8	131833660	131833660	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:131833660G>A	uc003ytd.3	-	13	2938	c.2682C>T	c.(2680-2682)TTC>TTT	p.F894F	ADCY8_uc010mds.2_Silent_p.F763F	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	894	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TGGTCCCCAGGAAATCTCTGT	0.458										HNSCC(32;0.087)			6	36					0	0	0.001168	0	0
ZFP41	286128	broad.mit.edu	37	8	144332051	144332052	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:144332051_144332052CC>TT	uc003yxw.2	+	2	396_397	c.38_39CC>TT	c.(37-39)ACC>ATT	p.T13I	ZFP41_uc003yxv.2_RNA	NM_173832	NP_776193	Q8N8Y5	ZFP41_HUMAN	zinc finger protein 41 homolog	13					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.6e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)			AAGACGCCGACCCCAAGGGAGG	0.604													6	12					0	0	0.004672	0	0
GPR172A	79581	broad.mit.edu	37	8	145583942	145583942	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr8:145583942C>T	uc003zcc.1	+	3	947	c.790C>T	c.(790-792)CCA>TCA	p.P264S	FBXL6_uc003zbz.2_5'Flank|FBXL6_uc003zca.2_5'Flank|FBXL6_uc003zcb.2_5'Flank|FBXL6_uc010mfx.2_5'Flank|GPR172A_uc003zcd.1_Missense_Mutation_p.P264S|GPR172A_uc003zce.1_Missense_Mutation_p.P264S|GPR172A_uc010mfy.1_Missense_Mutation_p.P264S|GPR172A_uc003zcf.1_Missense_Mutation_p.P264S|GPR172A_uc011llc.1_Missense_Mutation_p.P176S	NM_024531	NP_078807	Q9HAB3	RFT3_HUMAN	G protein-coupled receptor 172A precursor	264						integral to plasma membrane	receptor activity|riboflavin transporter activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;4.43e-40)|Epithelial(56;1.48e-39)|all cancers(56;1.49e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0441)|Colorectal(110;0.055)			CACCCCTGGTCCAGACCCTAA	0.647													16	39					0	0	0.004990	0	0
PTPRD	5789	broad.mit.edu	37	9	8518175	8518175	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:8518175C>T	uc003zkk.2	-	20	1927	c.1216G>A	c.(1216-1218)GAA>AAA	p.E406K	PTPRD_uc003zkp.2_Missense_Mutation_p.E406K|PTPRD_uc003zkq.2_Missense_Mutation_p.E406K|PTPRD_uc003zkr.2_Missense_Mutation_p.E400K|PTPRD_uc003zks.2_Missense_Mutation_p.E396K|PTPRD_uc003zkl.2_Missense_Mutation_p.E406K|PTPRD_uc003zkm.2_Missense_Mutation_p.E393K|PTPRD_uc003zkn.2_Missense_Mutation_p.E406K|PTPRD_uc003zko.2_Missense_Mutation_p.E403K	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	406	Fibronectin type-III 1.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		AGCACAGGTTCGCTGGGAGGC	0.542										TSP Lung(15;0.13)			31	78					0	0	0.001786	0	0
CER1	9350	broad.mit.edu	37	9	14722376	14722376	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:14722376C>T	uc003zlj.2	-	1	340	c.295G>A	c.(295-297)GAC>AAC	p.D99N		NM_005454	NP_005445	O95813	CER1_HUMAN	cerberus 1 precursor	99					BMP signaling pathway	extracellular space	cytokine activity				0				GBM - Glioblastoma multiforme(50;3.16e-06)		CTATCTGAGTCCCTGGATGGA	0.537													18	37					0	0	0.000958	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18817131	18817131	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:18817131G>A	uc003zne.3	+	21	3957	c.3830G>A	c.(3829-3831)CGA>CAA	p.R1277Q		NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	1277						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		AAAACGTCACGAATGACAGTG	0.448													3	7					0	0	0.004672	0	0
PIGO	84720	broad.mit.edu	37	9	35093124	35093124	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:35093124C>T	uc003zwd.2	-	6	1418	c.1022G>A	c.(1021-1023)GGG>GAG	p.G341E	PIGO_uc003zwc.1_3'UTR|PIGO_uc003zwe.2_Missense_Mutation_p.G341E|PIGO_uc003zwf.2_Missense_Mutation_p.G341E|PIGO_uc003zwg.1_5'UTR	NM_032634	NP_116023	Q8TEQ8	PIGO_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	341					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	transferase activity			large_intestine(1)|ovary(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			CATCACTTCCCCGATATTCCC	0.562													4	44					0	0	0.000248	0	0
TLN1	7094	broad.mit.edu	37	9	35699385	35699385	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:35699385G>A	uc003zxt.2	-	51	7196	c.6842C>T	c.(6841-6843)ACT>ATT	p.T2281I		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	2281					axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			GATGAGCTCAGTGACGGAACC	0.567													16	44					0	0	0.001523	0	0
GCNT1	2650	broad.mit.edu	37	9	79117829	79117829	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:79117829G>T	uc010mpf.2	+	3	873	c.532G>T	c.(532-534)GTG>TTG	p.V178L	GCNT1_uc010mpg.2_Missense_Mutation_p.V178L|GCNT1_uc010mph.2_Missense_Mutation_p.V178L|GCNT1_uc004akf.3_Missense_Mutation_p.V178L|GCNT1_uc010mpi.2_Missense_Mutation_p.V178L|GCNT1_uc004akh.3_Missense_Mutation_p.V178L	NM_001490	NP_001481	Q02742	GCNT1_HUMAN	beta-1,3-galactosyl-O-glycosyl-glycoprotein	178	Lumenal (Potential).|Catalytic (By similarity).				protein O-linked glycosylation	Golgi membrane|integral to membrane	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity				0						TAATGTCTTTGTGGCCAGCCG	0.463													29	74					9.78306e-22	1.88009e-21	0.001786	1	0
C9orf79	286234	broad.mit.edu	37	9	90502614	90502614	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:90502614G>A	uc004app.3	+	4	3247	c.3212G>A	c.(3211-3213)GGG>GAG	p.G1071E		NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	1071						integral to membrane				ovary(3)	3						GGGGCTCTGGGGACCACTGGT	0.587													24	76					0	0	0.005443	0	0
SECISBP2	79048	broad.mit.edu	37	9	91949551	91949551	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:91949551C>T	uc004aqj.1	+	7	1075	c.995C>T	c.(994-996)GCA>GTA	p.A332V	SECISBP2_uc010mqn.1_Intron|SECISBP2_uc004aqi.1_Intron|SECISBP2_uc011ltk.1_Missense_Mutation_p.A331V|SECISBP2_uc004aqk.1_Missense_Mutation_p.A259V|SECISBP2_uc010mqo.1_Missense_Mutation_p.A37V|SECISBP2_uc011ltl.1_Missense_Mutation_p.A264V	NM_024077	NP_076982	Q96T21	SEBP2_HUMAN	SECIS binding protein 2	332					translation	nucleus	mRNA 3'-UTR binding			ovary(2)|skin(1)	3						GCTTCATCAGCAGATCCTAAA	0.368													17	45					0	0	0.004007	0	0
LPPR1	54886	broad.mit.edu	37	9	104032255	104032255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:104032255G>A	uc004bbb.2	+	3	556	c.157G>A	c.(157-159)GGA>AGA	p.G53R	LPPR1_uc011lvi.1_Missense_Mutation_p.G29R|LPPR1_uc004bbc.2_Missense_Mutation_p.G53R|LPPR1_uc010mtc.2_Missense_Mutation_p.G37R	NM_207299	NP_997182	Q8TBJ4	LPPR1_HUMAN	plasticity related gene 3	53						integral to membrane	catalytic activity				0						CTGTCAGGACGGAGACTTAAT	0.493													20	39					0	0	0.001523	0	0
GRIN3A	116443	broad.mit.edu	37	9	104385660	104385660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:104385660C>T	uc004bbp.1	-	5	3155	c.2554G>A	c.(2554-2556)GAA>AAA	p.E852K	GRIN3A_uc004bbq.1_Missense_Mutation_p.E852K	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	852	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	ATTGACACTTCATAATCCAGA	0.393													18	69					0	0	0.001882	0	0
TMEM38B	55151	broad.mit.edu	37	9	108536265	108536265	+	Silent	SNP	A	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:108536265A>G	uc004bcu.1	+	6	897	c.780A>G	c.(778-780)GCA>GCG	p.A260A	TMEM38B_uc010mtn.1_3'UTR	NM_018112	NP_060582	Q9NVV0	TM38B_HUMAN	transmembrane protein 38B	260	Cytoplasmic (Potential).					integral to membrane|nuclear membrane|sarcoplasmic reticulum membrane	potassium channel activity			ovary(1)|skin(1)	2						AAAGTGAAGCAAAGTCACCTT	0.398													16	57					0	0	0.003163	0	0
C9orf152	401546	broad.mit.edu	37	9	112969770	112969770	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:112969770G>A	uc011lwk.1	-	1	644	c.90C>T	c.(88-90)GCC>GCT	p.A30A		NM_001012993	NP_001013011	Q5JTZ5	CI152_HUMAN	hypothetical protein LOC401546	30											0						CTTTCCCAGGGGCCTGAGTCC	0.642													18	40					0	0	0.000958	0	0
ZNF883	169834	broad.mit.edu	37	9	115759580	115759580	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:115759580G>A	uc011lwy.1	-	5	2199	c.960C>T	c.(958-960)CCC>CCT	p.P320P		NM_001101338	NP_001094808	P0CG24	ZN883_HUMAN	hypothetical protein LOC169834	320					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TACACTGGTAGGGTTTCTCTC	0.388													20	88					0	0	0.000958	0	0
PAPPA	5069	broad.mit.edu	37	9	119028244	119028244	+	Silent	SNP	T	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:119028244T>C	uc004bjn.2	+	8	3222	c.2841T>C	c.(2839-2841)TGT>TGC	p.C947C	PAPPA_uc011lxp.1_Silent_p.C642C|PAPPA_uc011lxq.1_Silent_p.C322C	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	947					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						GTGGGTACTGTGGCGATGGCA	0.438													13	34					0	0	0.001368	0	0
TLR4	7099	broad.mit.edu	37	9	120475867	120475867	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:120475867C>T	uc004bjz.2	+	3	1752	c.1461C>T	c.(1459-1461)TTC>TTT	p.F487F	TLR4_uc004bka.2_Silent_p.F447F|TLR4_uc004bkb.2_Silent_p.F287F	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	487	LRR 15.|Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						AGGAAAACTTCCTTCCAGATA	0.448													21	56					0	0	0.001216	0	0
CEP110	11064	broad.mit.edu	37	9	123858791	123858791	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:123858791A>C	uc004bkx.1	+	4	602	c.571A>C	c.(571-573)AAG>CAG	p.K191Q	CEP110_uc004bkw.2_Missense_Mutation_p.K191Q	NM_007018	NP_008949	Q7Z7A1	CNTRL_HUMAN	centrosomal protein 110kDa	191	LRR 3.				cell division|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding				0						GTTAGGGAAGAAGTTAAAATC	0.323													17	84					0	0	0.000958	0	0
DNM1	1759	broad.mit.edu	37	9	130985086	130985086	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:130985086G>A	uc011mau.1	+	9	1230	c.1143G>A	c.(1141-1143)GAG>GAA	p.E381E	DNM1_uc010mxr.2_Silent_p.E381E|DNM1_uc011mat.1_Silent_p.E381E	NM_004408	NP_004399	Q05193	DYN1_HUMAN	dynamin 1 isoform 1	381					receptor-mediated endocytosis	microtubule	GTP binding|GTPase activity			ovary(2)	2						AGTTTGATGAGAAGGAACTCC	0.547													10	49					0	0	0.000673	0	0
CCBL1	883	broad.mit.edu	37	9	131600646	131600646	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:131600646C>T	uc004bwh.2	-	4	387	c.202G>A	c.(202-204)GGT>AGT	p.G68S	CCBL1_uc004bwf.2_Missense_Mutation_p.G102S|CCBL1_uc004bwg.2_Intron|CCBL1_uc010myn.2_Missense_Mutation_p.G68S|CCBL1_uc004bwj.2_Intron|CCBL1_uc011mbl.1_Missense_Mutation_p.G162S|CCBL1_uc004bwi.2_RNA|CCBL1_uc010myo.2_Missense_Mutation_p.G68S	NM_004059	NP_004050	Q16773	KAT1_HUMAN	kynurenine aminotransferase I isoform a	68					kynurenine metabolic process|L-phenylalanine catabolic process|tryptophan catabolic process	cytosol|nucleus	1-aminocyclopropane-1-carboxylate synthase activity|cysteine-S-conjugate beta-lyase activity|glutamine-phenylpyruvate transaminase activity|kynurenine-oxoglutarate transaminase activity|L-glutamine:pyruvate aminotransferase activity|L-phenylalanine:pyruvate aminotransferase activity|protein homodimerization activity|pyridoxal phosphate binding			ovary(1)	1					L-Glutamine(DB00130)|Pyridoxal Phosphate(DB00114)	GGTGGGTAACCCTGCCAGGAC	0.592													7	21					0	0	0.003080	0	0
GPSM1	26086	broad.mit.edu	37	9	139252529	139252529	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:139252529C>G	uc004chd.2	+	14	2105	c.1885C>G	c.(1885-1887)CCG>GCG	p.P629A	GPSM1_uc011mdu.1_Missense_Mutation_p.P120A|GPSM1_uc004che.2_Missense_Mutation_p.P120A	NM_001145638	NP_001139110	Q86YR5	GPSM1_HUMAN	G-protein signaling modulator 1 (AGS3-like, C.	629					cell differentiation|nervous system development|signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|plasma membrane	binding|GTPase activator activity				0		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.39e-06)|Epithelial(140;3.24e-06)		CCCTACCATGCCGGACGAGGA	0.697													7	21					0	0	0.001984	0	0
NOTCH1	4851	broad.mit.edu	37	9	139391771	139391771	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:139391771G>A	uc004chz.2	-	34	6420	c.6420C>T	c.(6418-6420)TGC>TGT	p.C2140C		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	2140	Cytoplasmic (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		CGTTGGGCGAGCAGAGCGGGG	0.697			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			10	22					0	0	0.000443	0	0
MRPL41	64975	broad.mit.edu	37	9	140446788	140446788	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:140446788C>T	uc004cnh.3	+	2	385	c.255C>T	c.(253-255)CCC>CCT	p.P85P	PNPLA7_uc010ncj.1_5'Flank|PNPLA7_uc004cnf.2_5'Flank	NM_032477	NP_115866	Q8IXM3	RM41_HUMAN	mitochondrial ribosomal protein L41	85					apoptosis|cell cycle|translation	mitochondrial large ribosomal subunit	structural constituent of ribosome				0	all_cancers(76;0.106)			OV - Ovarian serous cystadenocarcinoma(145;0.000415)|Epithelial(140;0.00106)		AGGAGACGCCCCTGACGGCCG	0.612													7	22					0	0	0.001984	0	0
ARRDC1	92714	broad.mit.edu	37	9	140507443	140507444	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:140507443_140507444TC>AT	uc004cns.2	+	2	288_289	c.214_215TC>AT	c.(214-216)TCG>ATG	p.S72M	ARRDC1_uc004cnt.2_Translation_Start_Site|ARRDC1_uc004cnu.2_RNA|ARRDC1_uc004cnv.2_Intron|ARRDC1_uc004cnw.2_Translation_Start_Site|ARRDC1_uc004cnp.1_Missense_Mutation_p.S72M|ARRDC1_uc004cnq.1_Missense_Mutation_p.S72M|ARRDC1_uc011mfb.1_Translation_Start_Site|ARRDC1_uc004cnx.1_Translation_Start_Site|ARRDC1_uc004cny.2_5'Flank	NM_152285	NP_689498	Q8N5I2	ARRD1_HUMAN	arrestin domain containing 1	72											0	all_cancers(76;0.106)			OV - Ovarian serous cystadenocarcinoma(145;0.000273)|Epithelial(140;0.000464)		CAGTTCCCTGTCGCTGGCAGAC	0.604													6	16					0	0	0.004672	0	0
MXRA5	25878	broad.mit.edu	37	X	3242045	3242045	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:3242045C>T	uc004crg.3	-	5	1838	c.1681G>A	c.(1681-1683)GAT>AAT	p.D561N		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	561	Ig-like C2-type 1.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TCCATTTCATCCCTCACTTGA	0.532													4	7					0	0	0.000248	0	0
ACE2	59272	broad.mit.edu	37	X	15609836	15609836	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:15609836G>A	uc004cxa.1	-	4	751	c.583C>T	c.(583-585)CAT>TAT	p.H195Y	ACE2_uc004cxb.2_Missense_Mutation_p.H195Y	NM_021804	NP_068576	Q9BYF1	ACE2_HUMAN	angiotensin I converting enzyme 2 precursor	195	Extracellular (Potential).				angiotensin-mediated drinking behavior|proteolysis|receptor biosynthetic process|regulation of cell proliferation|virion attachment, binding of host cell surface receptor	cell surface|extracellular space|integral to membrane|membrane raft|plasma membrane	carboxypeptidase activity|glycoprotein binding|metallopeptidase activity|peptidyl-dipeptidase activity|viral receptor activity|zinc ion binding			ovary(3)	3	Hepatocellular(33;0.183)				Moexipril(DB00691)	GCAAACTTACGATTTGCTCTT	0.498													58	94					0	0	0.003610	0	0
KLHL15	80311	broad.mit.edu	37	X	24006085	24006085	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:24006085G>A	uc004dba.3	-	4	2024	c.1768C>T	c.(1768-1770)CTG>TTG	p.L590L		NM_030624	NP_085127	Q96M94	KLH15_HUMAN	kelch-like 15	590	Kelch 5.									ovary(1)|breast(1)	2						GGAAAATGCAGGTTGCATACT	0.458													19	31					0	0	0.001523	0	0
FAM47B	170062	broad.mit.edu	37	X	34961863	34961863	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:34961863C>T	uc004ddi.1	+	1	933	c.915C>T	c.(913-915)TCC>TCT	p.S305S		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	305	Pro-rich.									ovary(3)|breast(1)	4						CTGGAGTGTCCCATCTCCGCC	0.632													10	35					0	0	0.000673	0	0
CXorf36	79742	broad.mit.edu	37	X	45011044	45011044	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:45011044G>A	uc004dgg.2	-	5	1230	c.1155C>T	c.(1153-1155)ATC>ATT	p.I385I		NM_176819	NP_789789	Q9H7Y0	CX036_HUMAN	hypothetical protein LOC79742 isoform 1	385						extracellular region				lung(1)	1						ACTGAACAAGGATGGAGTCTA	0.587													11	21					0	0	0.000673	0	0
SSX6	280657	broad.mit.edu	37	X	47969934	47969935	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:47969934_47969935TC>GT	uc004dix.1	+	3	259_260	c.137_138TC>GT	c.(136-138)ATC>AGT	p.I46S	SSX6_uc011mlv.1_Missense_Mutation_p.I46S	NM_173357	NP_775493			SubName: Full=Putative uncharacterized protein SSX1;												0						TCGGAGAAAATCAGCTGTGTGC	0.406													16	63					0	0	0.004672	0	0
CLCN5	1184	broad.mit.edu	37	X	49853375	49853375	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:49853375C>T	uc004dos.1	+	9	1616	c.1368C>T	c.(1366-1368)ATC>ATT	p.I456I	CLCN5_uc004dor.1_Silent_p.I526I|CLCN5_uc004doq.1_Silent_p.I526I|CLCN5_uc004dot.1_Silent_p.I456I	NM_000084	NP_000075	P51795	CLCN5_HUMAN	chloride channel 5 isoform b	456	Helical; (By similarity).|Selectivity filter part_3 (By similarity).				excretion	apical part of cell|endosome membrane|Golgi membrane|integral to plasma membrane	antiporter activity|ATP binding			ovary(2)|lung(1)|central_nervous_system(1)	4	Ovarian(276;0.236)					GCCTCTTTATCCCTAGCATGG	0.483													54	105					0	0	0.003610	0	0
LAS1L	81887	broad.mit.edu	37	X	64753590	64753590	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:64753590C>G	uc004dwa.1	-	2	334	c.262G>C	c.(262-264)GTG>CTG	p.V88L	LAS1L_uc004dwc.1_Missense_Mutation_p.V88L|LAS1L_uc004dwd.1_Intron	NM_031206	NP_112483	Q9Y4W2	LAS1L_HUMAN	LAS1-like	88						MLL1 complex|nucleolus	protein binding			ovary(3)|large_intestine(1)	4						GTAGAAGCCACTGCCAGAGGG	0.522													26	28					0	0	0.004656	0	0
XIST	7503	broad.mit.edu	37	X	73066285	73066285	+	RNA	SNP	A	G	G			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:73066285A>G	uc004ebm.1	-	1		c.6304T>C				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GACGATTATAATCACACACAA	0.488													20	23					0	0	0.001216	0	0
GPR174	84636	broad.mit.edu	37	X	78427409	78427409	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:78427409G>A	uc004edg.1	+	1	941	c.905G>A	c.(904-906)CGG>CAG	p.R302Q		NM_032553	NP_115942	Q9BXC1	GP174_HUMAN	putative purinergic receptor FKSG79	302	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(1)|central_nervous_system(1)	2						TTCCGAAGACGGCTTTCAAGA	0.398										HNSCC(63;0.18)			17	28					0	0	0.006122	0	0
COL4A5	1287	broad.mit.edu	37	X	107814658	107814658	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:107814658C>T	uc004enz.1	+	7	602	c.400C>T	c.(400-402)CCA>TCA	p.P134S	COL4A5_uc011mso.1_Missense_Mutation_p.P134S	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	134	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						ACGTGGATTTCCAGGCAGTCC	0.368									Alport_syndrome_with_Diffuse_Leiomyomatosis				59	84					0	0	0.003610	0	0
RGAG1	57529	broad.mit.edu	37	X	109695732	109695732	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:109695732G>A	uc004eor.1	+	3	2133	c.1887G>A	c.(1885-1887)ACG>ACA	p.T629T	RGAG1_uc011msr.1_Silent_p.T629T	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	629										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						CGATGTTCACGGAGAAAATGA	0.507													18	26					0	0	0.000958	0	0
TRPC5	7224	broad.mit.edu	37	X	111097218	111097218	+	Silent	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:111097218G>A	uc004epl.1	-	4	1936	c.1017C>T	c.(1015-1017)TTC>TTT	p.F339F	TRPC5_uc004epm.1_Silent_p.F339F	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	339	Helical; (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						TGGGAAACAGGAACCCAATGG	0.507													14	10					0	0	0.002450	0	0
KLHL13	90293	broad.mit.edu	37	X	117043543	117043543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:117043543C>T	uc004eql.2	-	5	1149	c.1087G>A	c.(1087-1089)GAT>AAT	p.D363N	KLHL13_uc004eqk.2_Missense_Mutation_p.D312N|KLHL13_uc011mtn.1_Missense_Mutation_p.D203N|KLHL13_uc011mto.1_Missense_Mutation_p.D357N|KLHL13_uc011mtp.1_Missense_Mutation_p.D365N|KLHL13_uc004eqm.2_Missense_Mutation_p.D312N|KLHL13_uc011mtq.1_Missense_Mutation_p.D347N	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	363	Kelch 1.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						GCCTTTTCATCATACATGCGC	0.517													19	33					0	0	0.000958	0	0
CT47B1	643311	broad.mit.edu	37	X	120008962	120008962	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:120008962C>T	uc011muc.1	-	1	818	c.563G>A	c.(562-564)GGC>GAC	p.G188D		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	188											0						CTGGATCAGGCCGAGGCCCTC	0.716													18	17					0	0	0.006122	0	0
ODZ1	10178	broad.mit.edu	37	X	123785874	123785874	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:123785874G>A	uc004euj.2	-	8	1533	c.1469C>T	c.(1468-1470)TCG>TTG	p.S490L	ODZ1_uc011muj.1_Missense_Mutation_p.S489L|ODZ1_uc010nqy.2_Missense_Mutation_p.S490L	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	490	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CTCCTGAAGCGAAGTTAAGAT	0.428													19	33					0	0	0.001523	0	0
GPR112	139378	broad.mit.edu	37	X	135428106	135428106	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:135428106C>T	uc004ezu.1	+	6	2532	c.2241C>T	c.(2239-2241)TCC>TCT	p.S747S	GPR112_uc010nsb.1_Silent_p.S542S|GPR112_uc010nsc.1_Silent_p.S514S	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	747	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					GAACCACATCCATAACCAATA	0.383													13	27					0	0	0.001855	0	0
MAGEA11	4110	broad.mit.edu	37	X	148798210	148798210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:148798210C>T	uc004fdq.2	+	5	1166	c.1064C>T	c.(1063-1065)CCC>CTC	p.P355L	HSFX2_uc004fdl.2_Intron|HSFX1_uc004fdm.2_Intron|MAGEA11_uc004fdr.2_Missense_Mutation_p.P326L	NM_005366	NP_005357	P43364	MAGAB_HUMAN	melanoma antigen family A, 11 isoform a	355	MAGE.					cytoplasm|nucleus	protein binding			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					TTTGGGGAGCCCAAGAGGCTC	0.547													57	95					0	0	0.003610	0	0
GPR50	9248	broad.mit.edu	37	X	150348646	150348646	+	Silent	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:150348646C>T	uc010ntg.1	+	2	726	c.591C>T	c.(589-591)TTC>TTT	p.F197F	uc004fes.1_5'Flank|GPR50_uc011myc.1_Silent_p.F197F	NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	197	Helical; Name=5; (Potential).				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GCATCCACTTCGTCCTCCCTC	0.537													27	47					0	0	0.001512	0	0
NSDHL	50814	broad.mit.edu	37	X	152037544	152037544	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:152037544C>T	uc004fgt.1	+	9	1267	c.1006C>T	c.(1006-1008)CAC>TAC	p.H336Y	NSDHL_uc004fgs.1_Missense_Mutation_p.H336Y	NM_001129765	NP_001123237	Q15738	NSDHL_HUMAN	NAD(P) dependent steroid dehydrogenase-like	336					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity|sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity				0	Acute lymphoblastic leukemia(192;6.56e-05)				NADH(DB00157)	TGGCACATTCCACTACTACAG	0.587													8	18					0	0	0.003080	0	0
RPL10	6134	broad.mit.edu	37	X	153628212	153628213	+	Missense_Mutation	DNP	AT	TC	TC			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:153628212_153628213AT>TC	uc004fkm.2	+	5	447_448	c.259_260AT>TC	c.(259-261)ATC>TCC	p.I87S	uc010nuv.1_5'Flank|RPL10_uc004fko.2_Missense_Mutation_p.I87S|RPL10_uc004fkn.1_Missense_Mutation_p.I87S|RPL10_uc004fkp.1_Missense_Mutation_p.I87S|RPL10_uc004fkq.1_RNA|RPL10_uc004fkr.1_Missense_Mutation_p.I12S|SNORA70_uc010nux.1_5'Flank	NM_006013	NP_006004	P27635	RL10_HUMAN	ribosomal protein L10	87					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|endoplasmic reticulum	structural constituent of ribosome				0	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TGGCTTCCATATCCGGGTGCGG	0.525													18	23					0	0	0.004672	0	0
F8	2157	broad.mit.edu	37	X	154124374	154124374	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:154124374C>T	uc004fmt.2	-	22	6578	c.6407G>A	c.(6406-6408)GGA>GAA	p.G2136E	F8_uc010nvi.1_3'UTR	NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	2136	F5/8 type C 1.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	AGTGGAATTTCCTCGATAAGT	0.398													32	72					0	0	0.002836	0	0
Unknown	0	broad.mit.edu	37	X	155252868	155252868	+	Silent	SNP	T	A	A			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:155252868T>A	uc004fnw.1	+	6	1571	c.912T>A	c.(910-912)CCT>CCA	p.P304P	uc004fnx.3_Silent_p.P90P	NM_182905	NP_878908			WAS protein family homolog 1																		TAGCCGAGCCTCTCAAGGCAG	0.632													3	3					0	0	0.004672	0	0
PYGO2	90780	broad.mit.edu	37	1	154931385	154931386	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr1:154931385_154931386delCT	uc001fft.2	-	3	1296_1297	c.1090_1091delAG	c.(1090-1092)AGCfs	p.S364fs	PBXIP1_uc001ffr.2_5'Flank|PBXIP1_uc001ffs.2_5'Flank|PBXIP1_uc010pep.1_5'Flank	NM_138300	NP_612157	Q9BRQ0	PYGO2_HUMAN	pygopus homolog 2	364	PHD-type.				Wnt receptor signaling pathway	nucleus	protein binding|zinc ion binding			skin(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			CCCATAGGCGCTCTCAGTCATG	0.579													8	45	---	---	---	---					
C12orf11	55726	broad.mit.edu	37	12	27078704	27078707	+	Frame_Shift_Del	DEL	GAAC	-	-			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:27078704_27078707delGAAC	uc001rhk.3	-	6	1199_1202	c.662_665delGTTC	c.(661-666)CGTTCTfs	p.R221fs	C12orf11_uc010sjk.1_Frame_Shift_Del_p.R120fs	NM_018164	NP_060634	Q9NVM9	M89BB_HUMAN	hypothetical protein LOC55726	221_222					cell division|mitosis|regulation of mitotic cell cycle		protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	Colorectal(261;0.0847)					CTCTTTTTTAGAACGATCAGATAC	0.333													16	54	---	---	---	---					
WIF1	11197	broad.mit.edu	37	12	65462653	65462653	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr12:65462653delT	uc001ssk.2	-	4	574	c.429delA	c.(427-429)AAAfs	p.K143fs		NM_007191	NP_009122	Q9Y5W5	WIF1_HUMAN	WNT inhibitory factor 1 precursor	143	WIF.				multicellular organismal development|Wnt receptor signaling pathway	extracellular region	protein tyrosine kinase activity			ovary(2)|lung(1)|skin(1)	4			LUAD - Lung adenocarcinoma(6;0.0234)|LUSC - Lung squamous cell carcinoma(43;0.0975)	GBM - Glioblastoma multiforme(28;0.0231)		CCCCATCCTGTTTTCCAAGAC	0.353			T	HMGA2	pleomorphic salivary gland adenoma								19	77	---	---	---	---					
TEP1	7011	broad.mit.edu	37	14	20852269	20852269	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:20852269delT	uc001vxe.2	-	24	3502	c.3462delA	c.(3460-3462)CAAfs	p.Q1154fs	TEP1_uc010ahk.2_Frame_Shift_Del_p.Q504fs|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Frame_Shift_Del_p.Q1046fs|TEP1_uc010tlh.1_5'Flank	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1154					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		GCATCAGCCGTTGCACTGTGT	0.637													18	68	---	---	---	---					
PAPOLA	10914	broad.mit.edu	37	14	96993806	96993806	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr14:96993806delT	uc001yfq.2	+	5	581	c.371delT	c.(370-372)GTTfs	p.V124fs	PAPOLA_uc001yfo.2_Frame_Shift_Del_p.V124fs|PAPOLA_uc001yfp.2_Frame_Shift_Del_p.V124fs|PAPOLA_uc001yfr.2_Frame_Shift_Del_p.V124fs|PAPOLA_uc010twv.1_Frame_Shift_Del_p.V124fs|PAPOLA_uc010avp.2_Intron	NM_032632	NP_116021	P51003	PAPOA_HUMAN	poly(A) polymerase alpha	124					mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	cytoplasm|nucleoplasm	ATP binding|magnesium ion binding|manganese ion binding|polynucleotide adenylyltransferase activity|RNA binding				0		all_cancers(154;0.0555)|all_epithelial(191;0.149)|Melanoma(154;0.155)		COAD - Colon adenocarcinoma(157;0.213)		CCAAGACATGTTGATCGAAGT	0.343													18	45	---	---	---	---					
HMG20A	10363	broad.mit.edu	37	15	77759553	77759553	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr15:77759553delA	uc002bcr.2	+	5	555	c.354delA	c.(352-354)CGAfs	p.R118fs	HMG20A_uc002bcs.2_Frame_Shift_Del_p.R118fs	NM_018200	NP_060670	Q9NP66	HM20A_HUMAN	high-mobility group 20A	118	HMG box.				chromatin modification	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						ATGAGCGTCGAGAACAACTTC	0.458													25	42	---	---	---	---					
MYH11	4629	broad.mit.edu	37	16	15820795	15820797	+	In_Frame_Del	DEL	CTT	-	-	rs149241435	byFrequency	TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:15820795_15820797delCTT	uc002ddy.2	-	28	3873_3875	c.3766_3768delAAG	c.(3766-3768)AAGdel	p.K1256del	MYH11_uc002ddv.2_In_Frame_Del_p.K1263del|MYH11_uc002ddw.2_In_Frame_Del_p.K1256del|MYH11_uc002ddx.2_In_Frame_Del_p.K1263del|MYH11_uc010bvg.2_In_Frame_Del_p.K1088del|MYH11_uc010bvh.2_5'Flank	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	1256	Potential.		Missing (in AAT4).		axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						GCGCCTCCAGCTTCTTCTTCTTA	0.611			T	CBFB	AML								49	196	---	---	---	---					
MAZ	4150	broad.mit.edu	37	16	29821430	29821438	+	In_Frame_Del	DEL	GCGGCAGCG	-	-	rs75194070		TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr16:29821430_29821438delGCGGCAGCG	uc002dty.2	+	5	1480_1488	c.1312_1320delGCGGCAGCG	c.(1312-1320)GCGGCAGCGdel	p.AAA444del	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MAZ_uc002dtv.1_Intron|MAZ_uc010vdx.1_In_Frame_Del_p.AAA421del|MAZ_uc002dtw.2_Splice_Site_p.D94_splice|MAZ_uc002dtx.2_3'UTR|MAZ_uc010bzg.2_In_Frame_Del_p.AAA139del|MAZ_uc002dtz.1_3'UTR|MAZ_uc002dua.2_3'UTR|MAZ_uc010vdy.1_In_Frame_Del_p.AAA45del|uc002duc.1_RNA|PRRT2_uc002dud.2_5'Flank|PRRT2_uc002due.3_5'Flank|PRRT2_uc002duf.1_5'Flank	NM_002383	NP_002374	P56270	MAZ_HUMAN	MYC-associated zinc finger protein isoform 1	444_446	Poly-Ala.			Missing (in Ref. 3).	regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription|transcription initiation from RNA polymerase II promoter	nucleus	DNA binding|protein binding|RNA binding|zinc ion binding			ovary(1)	1						ggcggcggcagcggcagcggcggcagcgg	0.469													13	37	---	---	---	---					
ATAD5	79915	broad.mit.edu	37	17	29220806	29220806	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr17:29220806delT	uc002hfs.1	+	21	5281	c.4935delT	c.(4933-4935)TGTfs	p.C1645fs		NM_024857	NP_079133	Q96QE3	ATAD5_HUMAN	ATPase family, AAA domain containing 5	1645					response to DNA damage stimulus	nucleus	ATP binding|nucleoside-triphosphatase activity			ovary(3)	3		all_hematologic(16;0.0202)|Acute lymphoblastic leukemia(14;0.0238)|Myeloproliferative disorder(56;0.0393)				TTTCTCATTGTTTAAATTCTC	0.358													21	193	---	---	---	---					
PLEKHJ1	55111	broad.mit.edu	37	19	2236167	2236167	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr19:2236167delG	uc002lvf.1	-	1	162	c.81delC	c.(79-81)CCCfs	p.P27fs	MIR1227_hsa-mir-1227|MI0006316_5'Flank|SF3A2_uc002lvg.2_5'Flank	NM_018049	NP_060519	Q9NW61	PKHJ1_HUMAN	pleckstrin homology domain containing, family J	27	PH.						protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGCCCTTCTTGGGGCCCCTCA	0.453													2	4	---	---	---	---					
INO80B	83444	broad.mit.edu	37	2	74683021	74683038	+	In_Frame_Del	DEL	CCTATGGAAGGAGTCCCC	-	-	rs114533892	by1000genomes	TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr2:74683021_74683038delCCTATGGAAGGAGTCCCC	uc002slg.2	+	3	373_390	c.328_345delCCTATGGAAGGAGTCCCC	c.(328-345)CCTATGGAAGGAGTCCCCdel	p.PMEGVP110del	INO80B_uc002slf.1_In_Frame_Del_p.PMEGVP97del|INO80B_uc010yrr.1_In_Frame_Del_p.PMEGVP97del|WBP1_uc002slh.1_RNA|INO80B_uc002sli.1_RNA|INO80B_uc010yrs.1_In_Frame_Del_p.PMEGVP128del|WBP1_uc002slj.1_5'Flank|WBP1_uc002slk.1_5'Flank|WBP1_uc002sll.1_5'Flank	NM_031288	NP_112578	Q9C086	IN80B_HUMAN	high mobility group AT-hook 1-like 4	110_115					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ino80 complex|nucleolus	metal ion binding|protein binding			pancreas(1)	1						TGAAGAGGAACCTATGGAAGGAGTCCCCCTTGAGCAGT	0.518													7	152	---	---	---	---					
SLC13A4	26266	broad.mit.edu	37	7	135390892	135390892	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr7:135390892delT	uc003vta.2	-	4	1211	c.522delA	c.(520-522)GAAfs	p.E174fs	SLC13A4_uc003vtb.2_Frame_Shift_Del_p.E174fs	NM_012450	NP_036582	Q9UKG4	S13A4_HUMAN	solute carrier family 13 (sodium/sulfate	174						integral to plasma membrane	sodium:sulfate symporter activity				0						GTTCGGCCTCTTCGGTGTTGG	0.627													25	58	---	---	---	---					
SET	6418	broad.mit.edu	37	9	131455214	131455215	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chr9:131455214_131455215insT	uc004bvt.3	+	5	726_727	c.485_486insT	c.(484-486)GGTfs	p.G162fs	SET_uc004bvu.3_Frame_Shift_Ins_p.G149fs|SET_uc010myg.2_RNA|SET_uc011mbj.1_Frame_Shift_Ins_p.G138fs	NM_001122821	NP_001116293	Q01105	SET_HUMAN	SET translocation (myeloid leukemia-associated)	162					DNA replication|mRNA metabolic process|negative regulation of histone acetylation|negative regulation of neuron apoptosis|negative regulation of transcription, DNA-dependent|nucleocytoplasmic transport|nucleosome assembly|nucleosome disassembly	cytosol|endoplasmic reticulum|nucleoplasm|perinuclear region of cytoplasm|protein complex	histone binding|protein phosphatase inhibitor activity|protein phosphatase type 2A regulator activity				0		Myeloproliferative disorder(178;0.204)		GBM - Glioblastoma multiforme(294;3.1e-09)		AATGAGAGTGGTGATCCATCTT	0.297			T	NUP214	AML								7	30	---	---	---	---					
FAM58A	92002	broad.mit.edu	37	X	152860109	152860109	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A29N-06A-12D-A197-08	TCGA-EE-A29N-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	7b6c0e7c-15a2-4a4e-b9c4-a62332d15c52	47c54eeb-d2c8-4772-b4a1-1ac032ca7e3e	g.chrX:152860109delC	uc010nug.2	-	2	242	c.139delG	c.(139-141)GAAfs	p.E47fs				Q8N1B3	FA58A_HUMAN	RecName: Full=Cyclin-related protein FAM58B;	109					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GAGTCCAATTCCAGGGGCTCA	0.552													11	17	---	---	---	---					
