Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ACAP3	116983	broad.mit.edu	37	1	1230920	1230920	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:1230920G>A	uc001aeb.2	-	19	1794	c.1720C>T	c.(1720-1722)CGT>TGT	p.R574C	ACAP3_uc001ady.2_Missense_Mutation_p.R304C|ACAP3_uc001aea.2_Missense_Mutation_p.R532C	NM_030649	NP_085152	Q96P50	ACAP3_HUMAN	ArfGAP with coiled-coil, ankyrin repeat and PH	574					filopodium assembly|regulation of ARF GTPase activity|signal transduction		ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding				0						CGGAACTTACGATCCAGGGTG	0.667													5	21					0	0	0.000602	0	0
VPS13D	55187	broad.mit.edu	37	1	12343341	12343341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:12343341C>T	uc001atv.2	+	21	5323	c.5182C>T	c.(5182-5184)CAC>TAC	p.H1728Y	VPS13D_uc001atw.2_Missense_Mutation_p.H1728Y|VPS13D_uc001atx.2_Missense_Mutation_p.H916Y	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	1728					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		TCTCCCTTCCCACATGGAAGA	0.478													18	51					0	0	0.007413	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887371	12887371	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:12887371C>T	uc001auk.2	-	3	682	c.486G>A	c.(484-486)GTG>GTA	p.V162V		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	162											0						AGTCTAGGTTCACCATTTTCA	0.463													98	233					0	0	0.003610	0	0
CLCNKA	1187	broad.mit.edu	37	1	16358708	16358708	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:16358708C>T	uc001axu.2	+	17	1847	c.1767C>T	c.(1765-1767)ATC>ATT	p.I589I	CLCNKA_uc001axt.2_RNA|CLCNKA_uc001axv.2_Silent_p.I589I|CLCNKA_uc010obw.1_Silent_p.I546I|CLCNKB_uc001axw.3_Intron|CLCNKA_uc010oby.1_Missense_Mutation_p.S309F	NM_004070	NP_004061	P51800	CLCKA_HUMAN	chloride channel Ka isoform 1	589	CBS 1.				excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	AGTCCCAGATCCTGGTAGGCA	0.622													12	45					0	0	0.002450	0	0
ACTL8	81569	broad.mit.edu	37	1	18152383	18152383	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:18152383T>G	uc001bat.2	+	3	686	c.470T>G	c.(469-471)GTG>GGG	p.V157G		NM_030812	NP_110439	Q9H568	ACTL8_HUMAN	actin-like 8	157						cytoplasm|cytoskeleton				ovary(4)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00186)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;6.43e-06)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.00652)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)		CTGACCCGCGTGCAGCCTTTC	0.637											OREG0013157	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	24					0	0	0.000602	0	0
UBR4	23352	broad.mit.edu	37	1	19451079	19451079	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:19451079G>A	uc001bbi.2	-	65	9548	c.9544C>T	c.(9544-9546)CCA>TCA	p.P3182S	UBR4_uc001bbk.1_Missense_Mutation_p.P829S	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	3182					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		ACAGGAGGTGGGATTCGAGAA	0.458													12	24					0	0	0.001368	0	0
USP48	84196	broad.mit.edu	37	1	22055084	22055084	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:22055084G>A	uc001bfb.2	-	11	1667	c.1429C>T	c.(1429-1431)CAA>TAA	p.Q477*	USP48_uc010odq.1_Nonsense_Mutation_p.Q476*|USP48_uc009vqc.2_Nonsense_Mutation_p.Q477*|USP48_uc001bfc.2_Nonsense_Mutation_p.Q477*|USP48_uc001bfe.1_Nonsense_Mutation_p.Q476*|USP48_uc001bff.2_Nonsense_Mutation_p.Q477*	NM_032236	NP_115612	Q86UV5	UBP48_HUMAN	ubiquitin specific protease 48 isoform a	477	DUSP 1.				ubiquitin-dependent protein catabolic process	mitochondrion|nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(1)|lung(1)	2		Colorectal(325;3.46e-05)|all_lung(284;4.29e-05)|Lung NSC(340;4.66e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|OV - Ovarian serous cystadenocarcinoma(117;4.74e-26)|COAD - Colon adenocarcinoma(152;1.3e-05)|GBM - Glioblastoma multiforme(114;1.86e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000614)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(1967;0.00711)|Lung(427;0.0327)|READ - Rectum adenocarcinoma(331;0.0657)|LUSC - Lung squamous cell carcinoma(448;0.0753)		GGTAACCTTTGGTACAGCTCC	0.398													31	80					0	0	0.005524	0	0
CSMD2	114784	broad.mit.edu	37	1	34166119	34166119	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:34166119G>A	uc001bxn.1	-	23	3640	c.3611C>T	c.(3610-3612)TCC>TTC	p.S1204F	CSMD2_uc001bxm.1_Missense_Mutation_p.S1244F|CSMD2_uc001bxo.1_Missense_Mutation_p.S117F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1204	Extracellular (Potential).|CUB 7.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGACTTACTGGAAAAGTGCAG	0.438													11	37					0	0	0.008291	0	0
EBNA1BP2	10969	broad.mit.edu	37	1	43636489	43636489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:43636489G>A	uc001cin.2	-	4	582	c.385C>T	c.(385-387)CCT>TCT	p.P129S	EBNA1BP2_uc001cio.2_Missense_Mutation_p.P184S|WDR65_uc010ojz.1_5'Flank|WDR65_uc001cip.1_5'Flank|WDR65_uc001ciq.1_5'Flank|EBNA1BP2_uc001cim.2_Missense_Mutation_p.P24S|EBNA1BP2_uc010ojx.1_Missense_Mutation_p.P184S	NM_006824	NP_006815	Q99848	EBP2_HUMAN	EBNA1 binding protein 2 isoform 2	129					ribosome biogenesis	membrane fraction|nucleolus	protein binding				0	Ovarian(52;0.00579)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CGCTTCGTAGGGACTTTGAGC	0.473													41	98					0	0	0.002222	0	0
PTPRF	5792	broad.mit.edu	37	1	44069823	44069823	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:44069823C>T	uc001cjr.2	+	16	3340	c.3000C>T	c.(2998-3000)AGC>AGT	p.S1000S	PTPRF_uc001cjs.2_Silent_p.S991S|PTPRF_uc001cju.2_Intron|PTPRF_uc009vwt.2_Silent_p.S560S|PTPRF_uc001cjv.2_Silent_p.S460S|PTPRF_uc001cjw.2_Silent_p.S226S	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1000	Fibronectin type-III 7.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GCCCACTCAGCCCCAGCATCC	0.612													12	53					0	0	0.001855	0	0
SLC1A7	6512	broad.mit.edu	37	1	53600048	53600048	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:53600048C>T	uc001cuy.2	-	2	357	c.189G>A	c.(187-189)ATG>ATA	p.M63I	SLC1A7_uc001cuz.3_Missense_Mutation_p.M63I	NM_006671	NP_006662	O00341	EAA5_HUMAN	solute carrier family 1 (glutamate transporter),	63	Helical; (Potential).					integral to membrane|plasma membrane	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|large_intestine(1)	3				Colorectal(1306;0.234)	L-Glutamic Acid(DB00142)	GCAGGATCATCATCTTCAGCA	0.532													11	22					0	0	0.003163	0	0
FGGY	55277	broad.mit.edu	37	1	60139762	60139762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:60139762C>T	uc001czi.3	+	14	1681	c.1469C>T	c.(1468-1470)GCT>GTT	p.A490V	FGGY_uc001czh.2_RNA|FGGY_uc009wac.2_Missense_Mutation_p.A514V|FGGY_uc001czj.3_Missense_Mutation_p.A489V|FGGY_uc001czk.3_Missense_Mutation_p.A378V|FGGY_uc001czl.3_Missense_Mutation_p.A402V|FGGY_uc001czm.3_Missense_Mutation_p.A191V	NM_018291	NP_060761	Q96C11	FGGY_HUMAN	FGGY carbohydrate kinase domain containing	490					carbohydrate metabolic process|cell death|neuron homeostasis		kinase activity|phosphotransferase activity, alcohol group as acceptor			ovary(1)	1	all_cancers(7;7.36e-05)					GTGGGTGCTGCTGTTCTGGGT	0.612													6	30					0	0	0.003080	0	0
L1TD1	54596	broad.mit.edu	37	1	62675897	62675897	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:62675897G>A	uc001dae.3	+	4	1753	c.1451G>A	c.(1450-1452)GGA>GAA	p.G484E		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	484	Glu-rich.									ovary(1)|skin(1)	2						GAAGAAGAAGGAAAGAGCTCT	0.413													14	22					0	0	0.001855	0	0
LPHN2	23266	broad.mit.edu	37	1	82372750	82372750	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:82372750C>A	uc001dit.3	+	4	303	c.122C>A	c.(121-123)TCC>TAC	p.S41Y	LPHN2_uc001dis.2_Missense_Mutation_p.S41Y|LPHN2_uc001diu.2_Missense_Mutation_p.S41Y|LPHN2_uc001div.2_Missense_Mutation_p.S41Y|LPHN2_uc009wcd.2_Missense_Mutation_p.S41Y	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	41	Extracellular (Potential).|SUEL-type lectin.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		CGAGAATTATCCTGTGAAGGT	0.393													10	40					6.40141e-05	0.000206419	0.000978	1	0
GFI1	2672	broad.mit.edu	37	1	92946641	92946641	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:92946641C>T	uc001dou.3	-	4	467	c.303G>A	c.(301-303)TCG>TCA	p.S101S	GFI1_uc001dov.3_Silent_p.S101S|GFI1_uc001dow.3_Silent_p.S101S	NM_001127215	NP_001120687	Q99684	GFI1_HUMAN	growth factor independent 1	101					negative regulation of calcidiol 1-monooxygenase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription involved in G1/S phase of mitotic cell cycle|transcription, DNA-dependent|viral reproduction	nucleus	protein binding|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)	1		all_lung(203;0.00292)|Lung NSC(277;0.0115)|all_neural(321;0.185)|Glioma(108;0.203)		OV - Ovarian serous cystadenocarcinoma(397;9.04e-07)|Epithelial(280;1.17e-05)|all cancers(265;5.61e-05)|GBM - Glioblastoma multiforme(16;0.0191)		TTGACTTCTCCGAGGCTGTGG	0.682													7	12					0	0	0.004482	0	0
PHTF1	10745	broad.mit.edu	37	1	114253057	114253057	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:114253057T>C	uc009wgp.1	-	10	1540	c.1088A>G	c.(1087-1089)AAC>AGC	p.N363S	PHTF1_uc001edn.2_Missense_Mutation_p.N363S|PHTF1_uc001edm.2_Missense_Mutation_p.N120S|PHTF1_uc001edo.1_Missense_Mutation_p.N120S	NM_006608	NP_006599	Q9UMS5	PHTF1_HUMAN	putative homeodomain transcription factor 1	363						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Lung SC(450;0.184)	all_cancers(81;3.78e-08)|all_epithelial(167;5.56e-08)|all_lung(203;6.97e-06)|Lung NSC(69;1.18e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCTTGACATGTTGAGGCTTCG	0.453													13	46					0	0	0.001855	0	0
VTCN1	79679	broad.mit.edu	37	1	117699392	117699392	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:117699392G>A	uc001ehb.2	-	3	321	c.249C>T	c.(247-249)TTC>TTT	p.F83F	VTCN1_uc001ehc.2_5'UTR|VTCN1_uc009whf.1_Intron	NM_024626	NP_078902	Q7Z7D3	VTCN1_HUMAN	V-set domain containing T cell activation	83	Ig-like V-type 1.|Extracellular (Potential).					integral to membrane|plasma membrane					0	Lung SC(450;0.225)	all_cancers(81;6.05e-06)|all_epithelial(167;5.59e-07)|all_lung(203;2.85e-06)|Lung NSC(69;2e-05)		Lung(183;0.0664)|LUSC - Lung squamous cell carcinoma(189;0.214)|Colorectal(144;0.23)		TGCCTTCTTTGAACTCATGGA	0.468													23	70					0	0	0.003330	0	0
FCGR1C	100132417	broad.mit.edu	37	1	149376714	149376715	+	RNA	DNP	CC	TT	TT			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:149376714_149376715CC>TT	uc010pbh.1	+	5		c.653_654CC>TT				NR_027484				Homo sapiens cDNA FLJ77773 complete cds, highly similar to Homo sapiens Fc fragment of IgG, high affinity Ia, receptor (CD64) (FCGR1A), mRNA.												0						CTGTGACATCCCCACTCCTGGG	0.505													22	32					0	0	0.004672	0	0
TARS2	80222	broad.mit.edu	37	1	150471004	150471004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:150471004C>T	uc001euq.2	+	11	1272	c.1265C>T	c.(1264-1266)TCC>TTC	p.S422F	TARS2_uc010pcd.1_RNA|TARS2_uc001eur.2_Missense_Mutation_p.S340F|TARS2_uc009wlt.2_Missense_Mutation_p.S48F|TARS2_uc009wls.2_Missense_Mutation_p.S292F	NM_025150	NP_079426	Q9BW92	SYTM_HUMAN	threonyl-tRNA synthetase 2, mitochondrial	422					threonyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|threonine-tRNA ligase activity			ovary(1)	1	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.51e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)		L-Threonine(DB00156)	CGGCCCAGATCCTGGCGGGAA	0.657													15	70					0	0	0.004990	0	0
PSMD4	5710	broad.mit.edu	37	1	151237936	151237936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:151237936C>T	uc001exl.2	+	6	567	c.505C>T	c.(505-507)CAT>TAT	p.H169Y	PSMD4_uc001exn.2_Missense_Mutation_p.H169Y	NM_002810	NP_002801	P55036	PSMD4_HUMAN	proteasome 26S non-ATPase subunit 4	169	VWFA.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|viral reproduction	proteasome complex	protein binding|zinc ion binding				0	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			AACCGGTTCTCATCTGGTGAC	0.522													35	69					0	0	0.004878	0	0
RPTN	126638	broad.mit.edu	37	1	152128685	152128685	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:152128685T>C	uc001ezs.1	-	3	955	c.890A>G	c.(889-891)CAG>CGG	p.Q297R		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	297	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TCTGTCCGTCTGACCGTAGTG	0.512													111	425					0	0	0.003610	0	0
FLG2	388698	broad.mit.edu	37	1	152326343	152326343	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:152326343C>T	uc001ezw.3	-	3	3992	c.3919G>A	c.(3919-3921)GTT>ATT	p.V1307I	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1307							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTTCTGCGAACTGTGGATCCT	0.473													50	245					0	0	0.003610	0	0
FLG2	388698	broad.mit.edu	37	1	152327262	152327262	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:152327262G>A	uc001ezw.3	-	3	3073	c.3000C>T	c.(2998-3000)GGC>GGT	p.G1000G	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1000	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AACCATGTTGGCCATAATTAG	0.498													165	207					0	0	0.003610	0	0
SPRR2D	6703	broad.mit.edu	37	1	153012660	153012660	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:153012660G>A	uc001fbb.2	-	2	223	c.163C>T	c.(163-165)CCT>TCT	p.P55S	SPRR2D_uc009wnz.2_RNA	NM_006945	NP_008876	P22532	SPR2D_HUMAN	small proline-rich protein 2D	55					keratinization	cornified envelope|cytoplasm					0	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GTCACAGGAGGATATTTCTGC	0.557													130	197					0	0	0.003610	0	0
PGLYRP3	114771	broad.mit.edu	37	1	153275001	153275001	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:153275001G>A	uc001fbn.1	-	5	665	c.612C>T	c.(610-612)GTC>GTT	p.V204V		NM_052891	NP_443123	Q96LB9	PGRP3_HUMAN	peptidoglycan recognition protein 3 precursor	204					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4	all_lung(78;3.35e-32)|Lung NSC(65;1.22e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGATGATGATGACATATTTGG	0.478													48	86					0	0	0.003610	0	0
HCN3	57657	broad.mit.edu	37	1	155255737	155255737	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:155255737G>A	uc001fjz.1	+	6	1467	c.1459G>A	c.(1459-1461)GAT>AAT	p.D487N	RAG1AP1_uc010pey.1_Intron|HCN3_uc010pfz.1_Missense_Mutation_p.D182N	NM_020897	NP_065948	Q9P1Z3	HCN3_HUMAN	hyperpolarization activated cyclic	487	Cytoplasmic (Potential).|cAMP.					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)|breast(1)	2	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			ACGCCTCACCGATGGATCCTA	0.657													68	105					0	0	0.003610	0	0
CD1C	911	broad.mit.edu	37	1	158262023	158262023	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:158262023C>T	uc001fru.2	+	3	770	c.478C>T	c.(478-480)CAA>TAA	p.Q160*	CD1C_uc001frv.2_5'UTR	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	160	Extracellular (Potential).				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding			ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					AAGTTTGGCCCAAAGTGTCTG	0.458													72	207					0	0	0.003610	0	0
TNR	7143	broad.mit.edu	37	1	175334325	175334325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:175334325C>T	uc001gkp.1	-	10	2489	c.2408G>A	c.(2407-2409)AGA>AAA	p.R803K	TNR_uc009wwu.1_Missense_Mutation_p.R803K	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	803	Fibronectin type-III 6.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					AAGAATGAGTCTGTCTGCTGG	0.537													15	45					0	0	0.002450	0	0
PAPPA2	60676	broad.mit.edu	37	1	176661398	176661398	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:176661398C>T	uc001gkz.2	+	6	3732	c.2568C>T	c.(2566-2568)ACC>ACT	p.T856T	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	856					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TCGGACAGACCAACAAGTCCC	0.517													36	159					0	0	0.006230	0	0
QSOX1	5768	broad.mit.edu	37	1	180151450	180151450	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:180151450C>T	uc001gnz.2	+	6	823	c.748C>T	c.(748-750)CCC>TCC	p.P250S	QSOX1_uc001gny.2_Missense_Mutation_p.P250S|QSOX1_uc001goa.2_Missense_Mutation_p.P250S|QSOX1_uc001gob.1_RNA	NM_002826	NP_002817	O00391	QSOX1_HUMAN	quiescin Q6 sulfhydryl oxidase 1 isoform a	250					cell redox homeostasis|protein thiol-disulfide exchange	extracellular space|integral to Golgi membrane	flavin-linked sulfhydryl oxidase activity			ovary(1)|central_nervous_system(1)	2						CTCCCGAGTCCCCGTGTGAGT	0.597													33	103					0	0	0.005524	0	0
CACNA1E	777	broad.mit.edu	37	1	181727218	181727218	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:181727218G>A	uc001gow.2	+	31	4630	c.4465G>A	c.(4465-4467)GCC>ACC	p.A1489T	CACNA1E_uc009wxs.2_Missense_Mutation_p.A1377T|CACNA1E_uc001gox.1_Missense_Mutation_p.A715T|CACNA1E_uc009wxt.2_Missense_Mutation_p.A715T	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1489	Helical; Name=S1 of repeat IV.|IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GGCCATGATCGCCTTGAATAC	0.552													6	63					0	0	0.001168	0	0
PRG4	10216	broad.mit.edu	37	1	186276100	186276100	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:186276100A>C	uc001gru.3	+	7	1300	c.1249A>C	c.(1249-1251)ACC>CCC	p.T417P	PRG4_uc001grt.3_Missense_Mutation_p.T376P|PRG4_uc009wyl.2_Missense_Mutation_p.T324P|PRG4_uc009wym.2_Missense_Mutation_p.T283P|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	417	9.|59 X 8 AA repeats of K-X-P-X-P-T-T-X.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						ACCCACCACCACCAAGGAGCC	0.652													4	51					0	0	0.000978	0	0
PPFIA4	8497	broad.mit.edu	37	1	203024621	203024621	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:203024621A>G	uc001gyz.2	+	3	966	c.373A>G	c.(373-375)ACC>GCC	p.T125A	PPFIA4_uc009xaj.2_Missense_Mutation_p.T756A|PPFIA4_uc010pqf.1_Missense_Mutation_p.T338A|PPFIA4_uc001gza.2_Missense_Mutation_p.T125A|PPFIA4_uc001gzb.1_5'Flank	NM_015053	NP_055868	O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f	125	Potential.				cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						GACGCGTGTAACCAGTGGCAG	0.617													33	31					0	0	0.002445	0	0
CR1	1378	broad.mit.edu	37	1	207803933	207803933	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:207803933C>T	uc001hfy.2	+	38	6214	c.6074C>T	c.(6073-6075)CCC>CTC	p.P2025L	CR1_uc001hfx.2_Missense_Mutation_p.P2475L	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	2025	Cytoplasmic (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						AGCGTTCATCCCCGAACTCTG	0.353													16	12					0	0	0.004990	0	0
USH2A	7399	broad.mit.edu	37	1	216246511	216246511	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:216246511C>T	uc001hku.1	-	28	6091	c.5704G>A	c.(5704-5706)GGA>AGA	p.G1902R		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1902	Fibronectin type-III 5.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GAGTCATTTCCCCTGCAGTTA	0.488										HNSCC(13;0.011)			18	16					0	0	0.006122	0	0
TP53BP2	7159	broad.mit.edu	37	1	223991957	223991957	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:223991957C>A	uc010pvb.1	-	6	860	c.568G>T	c.(568-570)GAG>TAG	p.E190*	TP53BP2_uc001hod.2_Nonsense_Mutation_p.E61*|TP53BP2_uc010pva.1_5'Flank	NM_001031685	NP_001026855	Q13625	ASPP2_HUMAN	tumor protein p53 binding protein, 2 isoform 1	184					apoptosis|cell cycle|induction of apoptosis|negative regulation of cell cycle|signal transduction	nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protein binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(2)|lung(1)	3				GBM - Glioblastoma multiforme(131;0.0958)		TCCTGATTCTCAGCTATTTCT	0.398													6	183					0.00198382	0.00635194	0.001984	1	0
OBSCN	84033	broad.mit.edu	37	1	228451886	228451887	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:228451886_228451887CC>TT	uc009xez.1	+	16	4699_4700	c.4655_4656CC>TT	c.(4654-4656)GCC>GTT	p.A1552V	OBSCN_uc001hsn.2_Missense_Mutation_p.A1552V	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1552	Ig-like 16.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GGGACCAGTGCCACGCTGAGCT	0.644													11	68					0	0	0.004672	0	0
RYR2	6262	broad.mit.edu	37	1	237433839	237433839	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:237433839G>A	uc001hyl.1	+	2	211	c.91G>A	c.(91-93)GAA>AAA	p.E31K		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	31	Cytoplasmic (By similarity).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CATCCACAAAGAACAACAGAA	0.473													10	6					0	0	0.008291	0	0
OR2M2	391194	broad.mit.edu	37	1	248343781	248343781	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr1:248343781C>T	uc010pzf.1	+	1	494	c.494C>T	c.(493-495)TCC>TTC	p.S165F		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	165	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			GCCACATTTTCCTTCTCCTTT	0.423													51	213					0	0	0.003610	0	0
KIAA1217	56243	broad.mit.edu	37	10	24832987	24832987	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr10:24832987G>A	uc001iru.3	+	19	5191	c.4788G>A	c.(4786-4788)GGG>GGA	p.G1596G	KIAA1217_uc001irs.2_Intron|KIAA1217_uc001irt.3_Intron|KIAA1217_uc010qcy.1_Intron|KIAA1217_uc010qcz.1_Intron|KIAA1217_uc001irw.2_Intron|KIAA1217_uc001irz.2_Intron|KIAA1217_uc001irx.2_Silent_p.G1279G|KIAA1217_uc001iry.2_Intron|KIAA1217_uc001isa.1_Silent_p.G432G	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1596					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						CTAAAACAGGGAAGAAGACTT	0.458													32	64					0	0	0.004289	0	0
KIAA1462	57608	broad.mit.edu	37	10	30315085	30315085	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr10:30315085T>C	uc001iux.2	-	2	4051	c.3992A>G	c.(3991-3993)GAG>GGG	p.E1331G	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.E1193G|KIAA1462_uc009xle.1_Missense_Mutation_p.E1331G	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	1331										ovary(4)	4						TGCCGGATGCTCCTTCTCTTC	0.567													3	110					0	0	0.004672	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999128	46999128	+	Missense_Mutation	SNP	G	A	A	rs149580948		TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr10:46999128G>A	uc001jec.2	+	3	383	c.248G>A	c.(247-249)CGA>CAA	p.R83Q	GPRIN2_uc010qfq.1_5'Flank	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	83											0						CCCAAGGCGCGACCCAGTGCT	0.697													6	35					0	0	0.001984	0	0
PCDH15	65217	broad.mit.edu	37	10	55721651	55721651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr10:55721651C>T	uc001jju.1	-	22	3265	c.2870G>A	c.(2869-2871)GGA>GAA	p.G957E	PCDH15_uc010qhq.1_Missense_Mutation_p.G962E|PCDH15_uc010qhr.1_Missense_Mutation_p.G957E|PCDH15_uc010qhs.1_Missense_Mutation_p.G969E|PCDH15_uc010qht.1_Missense_Mutation_p.G964E|PCDH15_uc010qhu.1_Missense_Mutation_p.G957E|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.G957E|PCDH15_uc010qhw.1_Missense_Mutation_p.G920E|PCDH15_uc010qhx.1_Missense_Mutation_p.G886E|PCDH15_uc010qhy.1_Missense_Mutation_p.G962E|PCDH15_uc010qhz.1_Missense_Mutation_p.G957E|PCDH15_uc010qia.1_Missense_Mutation_p.G935E|PCDH15_uc010qib.1_Missense_Mutation_p.G935E	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	957	Extracellular (Potential).|Cadherin 9.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGCAGGTAATCCCtaaaataa	0.308										HNSCC(58;0.16)			17	19					0	0	0.004990	0	0
GRID1	2894	broad.mit.edu	37	10	88123843	88123843	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr10:88123843G>A	uc001kdl.1	-	2	191	c.90C>T	c.(88-90)TTC>TTT	p.F30F	GRID1_uc009xsu.1_RNA	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	30	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	CGTTCTCCTCGAAGATGGCAC	0.597										Multiple Myeloma(13;0.14)			13	25					0	0	0.002450	0	0
AGAP11	119385	broad.mit.edu	37	10	88768401	88768401	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr10:88768401G>A	uc001kee.2	+	12	1596	c.392G>A	c.(391-393)CGA>CAA	p.R131Q	AGAP11_uc001kef.2_Intron	NM_133447	NP_597704	Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase	131	PH.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						CTCTTAAAGCGAAGTGGGAAA	0.488													70	143					0	0	0.003610	0	0
MYOF	26509	broad.mit.edu	37	10	95070382	95070382	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr10:95070382A>T	uc001kin.2	-	52	6031	c.5908T>A	c.(5908-5910)TTG>ATG	p.L1970M	MYOF_uc001kio.2_Missense_Mutation_p.L1957M|MYOF_uc009xue.2_RNA	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	1970	Cytoplasmic (Potential).				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						AGGATTTCCAATGTCATCTCC	0.498													22	50					0	0	0.003954	0	0
DNMBP	23268	broad.mit.edu	37	10	101654768	101654768	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr10:101654768G>A	uc001kqj.2	-	11	3183	c.3091C>T	c.(3091-3093)CGA>TGA	p.R1031*	DNMBP_uc010qpl.1_5'UTR|DNMBP_uc001kqg.2_Nonsense_Mutation_p.R319*|DNMBP_uc001kqh.2_Nonsense_Mutation_p.R663*	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	1031	BAR.				intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		TCTTGCATTCGGAAGTTTTTT	0.363													5	16					0	0	0.000602	0	0
PKD2L1	9033	broad.mit.edu	37	10	102057345	102057345	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr10:102057345C>T	uc001kqx.1	-	5	1133	c.750G>A	c.(748-750)CAG>CAA	p.Q250Q	PKD2L1_uc009xwm.1_Silent_p.Q203Q	NM_016112	NP_057196	Q9P0L9	PK2L1_HUMAN	polycystic kidney disease 2-like 1	250	Extracellular (Potential).				signal transduction	integral to membrane	calcium activated cation channel activity|calcium ion binding|cytoskeletal protein binding			ovary(4)	4		Colorectal(252;0.117)		Epithelial(162;6.15e-10)|all cancers(201;5.14e-08)		CCAACTCATCCTGCGAGTGGT	0.562													5	11					0	0	0.000602	0	0
NOLC1	9221	broad.mit.edu	37	10	103921610	103921611	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr10:103921610_103921611CC>TT	uc001kuo.2	+	12	2104_2105	c.1869_1870CC>TT	c.(1867-1872)TCCCCA>TCTTCA	p.P624S	NOLC1_uc001kup.2_Missense_Mutation_p.P634S|NOLC1_uc001kuq.2_Missense_Mutation_p.P625S|NOLC1_uc009xxb.1_Missense_Mutation_p.P343S|NOLC1_uc001kur.2_Missense_Mutation_p.P343S	NM_004741	NP_004732	Q14978	NOLC1_HUMAN	nucleolar and coiled-body phosphoprotein 1	624					mitosis|rRNA processing	cytoplasm|nucleolus	ATP binding|GTP binding|protein binding			ovary(1)	1		Colorectal(252;0.122)		Epithelial(162;5.19e-08)|all cancers(201;9.43e-07)		GGGCATCATCCCCATTCCGAAG	0.47													12	35					0	0	0.004672	0	0
ITPRIP	85450	broad.mit.edu	37	10	106075177	106075177	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr10:106075177G>A	uc001kye.2	-	2	706	c.633C>T	c.(631-633)TTC>TTT	p.F211F	ITPRIP_uc001kyf.2_Silent_p.F211F|ITPRIP_uc001kyg.2_Silent_p.F211F	NM_033397	NP_203755	Q8IWB1	IPRI_HUMAN	inositol 1,4,5-triphosphate receptor interacting	211						plasma membrane					0						TGAAGGGCACGAAAAGGTGGC	0.637													14	30					0	0	0.003163	0	0
CPXM2	119587	broad.mit.edu	37	10	125516860	125516860	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr10:125516860C>T	uc001lhk.1	-	12	2111	c.1786G>A	c.(1786-1788)GAT>AAT	p.D596N	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	596					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		TAGCTGAAATCGTTCAGACCT	0.493													14	28					0	0	0.001855	0	0
BRSK2	9024	broad.mit.edu	37	11	1471065	1471065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:1471065G>A	uc001lti.2	+	13	1672	c.1286G>A	c.(1285-1287)CGG>CAG	p.R429Q	BRSK2_uc009ycv.1_Missense_Mutation_p.R451Q|BRSK2_uc001lth.1_Missense_Mutation_p.R429Q|BRSK2_uc001ltj.2_Missense_Mutation_p.R429Q|BRSK2_uc001ltk.2_RNA|BRSK2_uc001ltl.2_Missense_Mutation_p.R429Q|BRSK2_uc001ltm.2_Missense_Mutation_p.R475Q|BRSK2_uc001ltn.2_RNA|BRSK2_uc010qwx.1_RNA|BRSK2_uc009ycw.2_5'Flank	NM_003957	NP_003948	Q8IWQ3	BRSK2_HUMAN	BR serine/threonine kinase 2	429	Pro-rich.				establishment of cell polarity|neuron differentiation		ATP binding|magnesium ion binding|protein serine/threonine kinase activity				0		all_epithelial(84;4.17e-05)|Breast(177;0.000307)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00144)|Lung(200;0.0713)|LUSC - Lung squamous cell carcinoma(625;0.0842)		AGCAGCCCCCGGGTGAGTGAC	0.701													11	40					0	0	0.008291	0	0
LOC650368	650368	broad.mit.edu	37	11	3429945	3429946	+	RNA	DNP	GG	AA	AA			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:3429945_3429946GG>AA	uc010qxs.1	+	11		c.1044_1045GG>AA			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						CTGATCCTGCGGGCAAGCTAAA	0.53													11	32					0	0	0.004672	0	0
HBD	3045	broad.mit.edu	37	11	5255382	5255382	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:5255382G>A	uc001maf.1	-	2	349	c.154C>T	c.(154-156)CCT>TCT	p.P52S		NM_000519	NP_000510	P02042	HBD_HUMAN	delta globin	52					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;5.69e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACAGCATCAGGAGAGGACAGA	0.537													25	75					0	0	0.003330	0	0
OR52E8	390079	broad.mit.edu	37	11	5878415	5878415	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:5878415G>A	uc010qzr.1	-	1	518	c.518C>T	c.(517-519)CCC>CTC	p.P173L	TRIM5_uc001mbq.1_Intron	NM_001005168	NP_001005168	Q6IFG1	O52E8_HUMAN	olfactory receptor, family 52, subfamily E,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.114)		Epithelial(150;2.37e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCCACAGAAGGGCAGCCTCAG	0.507													29	62					0	0	0.007291	0	0
OLFML1	283298	broad.mit.edu	37	11	7530941	7530941	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:7530941G>A	uc001mfi.2	+	3	1083	c.731G>A	c.(730-732)AGG>AAG	p.R244K	OLFML1_uc010raz.1_Missense_Mutation_p.R108K|OLFML1_uc010rba.1_Missense_Mutation_p.R244K	NM_198474	NP_940876	Q6UWY5	OLFL1_HUMAN	olfactomedin-like 1 precursor	244	Olfactomedin-like.					extracellular region				ovary(2)	2				Epithelial(150;6.96e-08)|BRCA - Breast invasive adenocarcinoma(625;0.194)		CTGCAGAAGAGGACTGTGGAA	0.463													14	33					0	0	0.003163	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18956224	18956224	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:18956224G>A	uc001mpg.2	-	1	326	c.108C>T	c.(106-108)ATC>ATT	p.I36I		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	36	Helical; Name=1; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						CAAGGGAAACGATGCACGTCA	0.557													35	207					0	0	0.004878	0	0
NAV2	89797	broad.mit.edu	37	11	20127234	20127234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:20127234C>T	uc001mpr.3	+	35	7172	c.6811C>T	c.(6811-6813)CGC>TGC	p.R2271C	NAV2_uc001mpp.2_Missense_Mutation_p.R2204C|NAV2_uc009yhx.2_Missense_Mutation_p.R1332C|NAV2_uc009yhz.2_Missense_Mutation_p.R913C|NAV2_uc001mpu.2_Missense_Mutation_p.R706C|NAV2_uc001mpv.2_Missense_Mutation_p.R30C	NM_182964	NP_892009	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 1	2327						nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						TCACCTCAACCGCTTCCTGGA	0.597													15	43					0	0	0.004990	0	0
SLC17A6	57084	broad.mit.edu	37	11	22360116	22360116	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:22360116A>T	uc001mqk.2	+	1	450	c.37A>T	c.(37-39)AAA>TAA	p.K13*		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	13	Cytoplasmic (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						GGCCCCAGGAAAAGAGGGGCT	0.433													9	34					0	0	0.006214	0	0
KCNA4	3739	broad.mit.edu	37	11	30034030	30034030	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:30034030G>A	uc001msk.2	-	2	1348	c.196C>T	c.(196-198)CAG>TAG	p.Q66*		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	66						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CCGCGTGACTGGTGGTGGTGG	0.657													16	38					0	0	0.004990	0	0
SLC1A2	6506	broad.mit.edu	37	11	35336577	35336577	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:35336577T>G	uc001mwd.2	-	3	895	c.303A>C	c.(301-303)TTA>TTC	p.L101F	SLC1A2_uc001mwe.2_Missense_Mutation_p.L92F|SLC1A2_uc010rev.1_Missense_Mutation_p.L101F	NM_004171	NP_004162	P43004	EAA2_HUMAN	excitatory amino acid transporter 2	101	Helical; (Potential).				D-aspartate import|L-glutamate import|synaptic transmission	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|central_nervous_system(1)	3	all_lung(20;0.211)|all_epithelial(35;0.234)	all_hematologic(20;0.109)	STAD - Stomach adenocarcinoma(6;0.00731)		L-Glutamic Acid(DB00142)	TACCTGTGATTAAGCTGGAGA	0.438													27	66					0	0	0.007291	0	0
C11orf74	119710	broad.mit.edu	37	11	36654869	36654869	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:36654869G>A	uc001mwy.1	+	3	245	c.172G>A	c.(172-174)GAT>AAT	p.D58N	C11orf74_uc010rfd.1_RNA|C11orf74_uc001mww.1_Intron|C11orf74_uc001mwx.1_Intron|C11orf74_uc001mwz.1_Intron|C11orf74_uc010rfe.1_RNA	NM_138787	NP_620142	Q86VG3	CK074_HUMAN	hypothetical protein LOC119710	58											0	all_lung(20;0.226)	all_hematologic(20;0.0118)				GTTTGGAACTGATTCTTCAGA	0.338													14	39					0	0	0.006122	0	0
AMBRA1	55626	broad.mit.edu	37	11	46565585	46565585	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:46565585C>T	uc010rgu.1	-	6	918	c.558G>A	c.(556-558)GTG>GTA	p.V186V	AMBRA1_uc010rgt.1_5'Flank|AMBRA1_uc009ylc.1_Silent_p.V186V|AMBRA1_uc001ncu.1_Silent_p.V186V|AMBRA1_uc001ncv.2_Silent_p.V186V|AMBRA1_uc001ncw.2_Silent_p.V186V|AMBRA1_uc001ncx.2_Silent_p.V186V	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	186					autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		GATCAAATCTCACCAGACTAA	0.373													22	47					0	0	0.003330	0	0
F2	2147	broad.mit.edu	37	11	46750981	46750981	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:46750981G>A	uc001ndf.3	+	12	1567	c.1524G>A	c.(1522-1524)AAG>AAA	p.K508K	F2_uc001ndg.3_RNA	NM_000506	NP_000497	P00734	THRB_HUMAN	coagulation factor II preproprotein	508	Peptidase S1.				activation of caspase activity|acute-phase response|blood coagulation, intrinsic pathway|cell surface receptor linked signaling pathway|cytosolic calcium ion homeostasis|fibrinolysis|leukocyte migration|negative regulation of astrocyte differentiation|negative regulation of fibrinolysis|negative regulation of platelet activation|negative regulation of proteolysis|peptidyl-glutamic acid carboxylation|platelet activation|positive regulation of collagen biosynthetic process|positive regulation of protein phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of release of sequestered calcium ion into cytosol|post-translational protein modification|proteolysis|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	cytosol|endoplasmic reticulum lumen|extracellular space|Golgi lumen|plasma membrane|soluble fraction	calcium ion binding|growth factor activity|serine-type endopeptidase activity|thrombospondin receptor activity			ovary(3)	3		all_lung(304;0.000414)|Lung NSC(402;0.0011)		BRCA - Breast invasive adenocarcinoma(625;0.146)	Antihemophilic Factor(DB00025)|Argatroban(DB00278)|Bivalirudin(DB00006)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)|Enoxaparin(DB01225)|Heparin(DB01109)|Lepirudin(DB00001)|Menadione(DB00170)|Proflavine(DB01123)|Simvastatin(DB00641)|Suramin(DB04786)|Warfarin(DB00682)|Ximelagatran(DB04898)	GCAACCTGAAGGAGACGTGGA	0.632													27	60					0	0	0.002096	0	0
OR8H3	390152	broad.mit.edu	37	11	55890126	55890126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:55890126C>T	uc001nii.1	+	1	278	c.278C>T	c.(277-279)TCC>TTC	p.S93F		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					AACTATATTTCCTTCACGGGC	0.423													69	232					0	0	0.003610	0	0
OR8K3	219473	broad.mit.edu	37	11	56085949	56085949	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:56085949A>G	uc010rjf.1	+	1	167	c.167A>G	c.(166-168)CAA>CGA	p.Q56R		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	56	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					TCCAGGTTGCAAACCCCTATG	0.418													38	121					0	0	0.006230	0	0
OR8K1	390157	broad.mit.edu	37	11	56113754	56113754	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:56113754C>T	uc010rjg.1	+	1	240	c.240C>T	c.(238-240)TCC>TCT	p.S80S		NM_001002907	NP_001002907	Q8NGG5	OR8K1_HUMAN	olfactory receptor, family 8, subfamily K,	80	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					TTGGTTACTCCACTGTCATTG	0.408										HNSCC(65;0.19)			17	89					0	0	0.006122	0	0
APLNR	187	broad.mit.edu	37	11	57003831	57003831	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:57003831G>A	uc001njo.2	-	1	1097	c.648C>T	c.(646-648)ATC>ATT	p.I216I	APLNR_uc001njn.3_RNA	NM_005161	NP_005152	P35414	APJ_HUMAN	apelin receptor	216	Helical; Name=5; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			lung(5)|ovary(1)	6						AGGTCAGCATGATGGTGAAGG	0.622													17	42					0	0	0.007413	0	0
PATL1	219988	broad.mit.edu	37	11	59410478	59410478	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:59410478G>A	uc001noe.3	-	16	2067	c.1924C>T	c.(1924-1926)CTC>TTC	p.L642F	PATL1_uc009yms.1_Missense_Mutation_p.L612F	NM_152716	NP_689929	Q86TB9	PATL1_HUMAN	protein associated with topoisomerase II homolog	642	Region C.				cytoplasmic mRNA processing body assembly|deadenylation-dependent decapping of nuclear-transcribed mRNA	cytoplasmic mRNA processing body	protein binding|RNA binding			ovary(1)	1						TAGAGAAGGAGAGAGAAGGGA	0.473													28	50					0	0	0.004656	0	0
TMEM216	51259	broad.mit.edu	37	11	61161357	61161357	+	Silent	SNP	T	G	G			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:61161357T>G	uc010rlj.1	+	3	410	c.117T>G	c.(115-117)GGT>GGG	p.G39G	TMEM216_uc001nrn.1_5'UTR	NM_016499	NP_057583	Q9P0N5	TM216_HUMAN	transmembrane protein 216	39						integral to membrane					0						TATTGGCAGGTGTCCTGCTAC	0.438													14	46					0	0	0.004990	0	0
MAP4K2	5871	broad.mit.edu	37	11	64567664	64567664	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:64567664G>A	uc001obh.2	-	12	924	c.832C>T	c.(832-834)CCT>TCT	p.P278S	MAP4K2_uc001obi.2_Missense_Mutation_p.P278S	NM_004579	NP_004570	Q12851	M4K2_HUMAN	mitogen-activated protein kinase kinase kinase	278					activation of JUN kinase activity|immune response|positive regulation of JNK cascade|vesicle targeting	basolateral plasma membrane|Golgi membrane|soluble fraction	ATP binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(1)|pancreas(1)	2						AGGGCCCGAGGGAGCTGCTGA	0.647													7	23					0	0	0.001984	0	0
GPR152	390212	broad.mit.edu	37	11	67219374	67219374	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:67219374C>T	uc001olm.2	-	1	827	c.822G>A	c.(820-822)TGG>TGA	p.W274*	uc009yrw.1_5'Flank|CABP4_uc001oln.2_5'Flank	NM_206997	NP_996880	Q8TDT2	GP152_HUMAN	G protein-coupled receptor 152	274	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			CCAGGGCCTCCCAGAGCAGGT	0.627													11	30					0	0	0.000978	0	0
ALDH3B2	222	broad.mit.edu	37	11	67432808	67432808	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:67432808G>A	uc001omr.2	-	7	1093	c.654C>T	c.(652-654)GGC>GGT	p.G218G	ALDH3B2_uc001oms.2_Silent_p.G218G|ALDH3B2_uc009ysa.1_Silent_p.G218G	NM_000695	NP_000686	P48448	AL3B2_HUMAN	aldehyde dehydrogenase 3B2	218					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase			lung(1)|kidney(1)	2					NADH(DB00157)	CGCGGCTGCAGCCCAGCAATG	0.632													17	52					0	0	0.001786	0	0
CLPB	81570	broad.mit.edu	37	11	72005078	72005078	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:72005078G>A	uc001osj.2	-	16	1913	c.1863C>T	c.(1861-1863)TCC>TCT	p.S621S	CLPB_uc010rqx.1_Silent_p.S576S|CLPB_uc010rqy.1_Silent_p.S562S|CLPB_uc001osk.2_Silent_p.S591S|CLPB_uc009ytg.2_RNA|CLPB_uc010rqz.1_Silent_p.S420S|CLPB_uc001osi.2_Silent_p.S229S	NM_030813	NP_110440	Q9H078	CLPB_HUMAN	caseinolytic peptidase B	621					cellular response to heat		ATP binding|nucleoside-triphosphatase activity|protein binding			pancreas(1)	1						CATGTTTGATGGAGCGGGCGC	0.622													86	242					0	0	0.003610	0	0
ARHGEF17	9828	broad.mit.edu	37	11	73021239	73021239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:73021239C>T	uc001otu.2	+	1	1577	c.1556C>T	c.(1555-1557)CCC>CTC	p.P519L		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Rho guanine nucleotide exchange factor (GEF) 17	519					actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity				0						CAACTTGAACCCATACCCATC	0.612													18	30					0	0	0.004990	0	0
ME3	10873	broad.mit.edu	37	11	86158220	86158220	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:86158220C>T	uc001pbz.2	-	11	1521	c.1267G>A	c.(1267-1269)GAG>AAG	p.E423K	ME3_uc001pca.2_Missense_Mutation_p.E423K|ME3_uc009yvk.2_Missense_Mutation_p.E423K	NM_001014811	NP_001014811	Q16798	MAON_HUMAN	mitochondrial malic enzyme 3 precursor	423					aerobic respiration|malate metabolic process|oxygen metabolic process|pyruvate metabolic process	mitochondrial matrix	malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|metal ion binding|NAD binding			ovary(1)	1		Acute lymphoblastic leukemia(157;4.34e-06)|all_hematologic(158;0.00252)			NADH(DB00157)	AGAATCTGCTCCGTGAAGGCT	0.577													20	52					0	0	0.001523	0	0
TRPC6	7225	broad.mit.edu	37	11	101374914	101374914	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:101374914C>T	uc001pgk.3	-	2	1211	c.786G>A	c.(784-786)CAG>CAA	p.Q262Q	TRPC6_uc009ywy.2_Silent_p.Q262Q|TRPC6_uc009ywz.1_Silent_p.Q262Q	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	262	Cytoplasmic (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		AGTCATGCTTCTGTTTCTGGT	0.468													35	96					0	0	0.004878	0	0
ATM	472	broad.mit.edu	37	11	108205756	108205756	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:108205756C>T	uc001pkb.1	+	55	8456	c.8071C>T	c.(8071-8073)CGC>TGC	p.R2691C	ATM_uc009yxr.1_Missense_Mutation_p.R2691C|C11orf65_uc010rvx.1_Intron|C11orf65_uc009yxu.1_Intron|ATM_uc001pke.1_Missense_Mutation_p.R1343C	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	2691					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		AGCAGAATTTCGCTTAGCAGG	0.393			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			10	35					0	0	0.000978	0	0
USP2	9099	broad.mit.edu	37	11	119228485	119228485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:119228485G>A	uc001pwm.3	-	10	1778	c.1483C>T	c.(1483-1485)CCA>TCA	p.P495S	USP2_uc001pwl.3_Missense_Mutation_p.P286S|USP2_uc001pwn.3_Missense_Mutation_p.P252S	NM_004205	NP_004196	O75604	UBP2_HUMAN	ubiquitin specific peptidase 2 isoform a	495	Necessary for interaction with MDM4.				cell cycle|muscle organ development|negative regulation of transcription from RNA polymerase II promoter|positive regulation of mitotic cell cycle|protein deubiquitination|protein stabilization|ubiquitin-dependent protein catabolic process	nucleus|perinuclear region of cytoplasm	cyclin binding|cysteine-type endopeptidase activity|metal ion binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity			ovary(2)|urinary_tract(1)|skin(1)	4		all_hematologic(192;4.65e-05)|Breast(348;0.0101)|all_neural(223;0.0218)|Medulloblastoma(222;0.0425)|Renal(330;0.157)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.000513)|Colorectal(284;0.0116)|Lung(307;0.0853)|LUSC - Lung squamous cell carcinoma(976;0.0889)		AAGATCTTTGGGAACCTCTGG	0.502													85	284					0	0	0.003610	0	0
FOXRED1	55572	broad.mit.edu	37	11	126146989	126146989	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr11:126146989C>G	uc001qdi.2	+	10	1172	c.1125C>G	c.(1123-1125)AAC>AAG	p.N375K	FOXRED1_uc010sbn.1_Missense_Mutation_p.N205K|FOXRED1_uc010sbo.1_RNA|FOXRED1_uc010sbp.1_Missense_Mutation_p.N188K|FOXRED1_uc010sbq.1_Missense_Mutation_p.N242K|FOXRED1_uc001qdj.2_Missense_Mutation_p.N164K|FOXRED1_uc010sbr.1_Missense_Mutation_p.N361K|FOXRED1_uc001qdk.2_Missense_Mutation_p.N164K	NM_017547	NP_060017	Q96CU9	FXRD1_HUMAN	FAD-dependent oxidoreductase domain containing	375						integral to membrane|mitochondrion	oxidoreductase activity|protein binding				0	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0739)|all_lung(97;0.0798)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0729)		ACCCGGCGAACCTGGAAGTGG	0.557													7	32					0	0	0.003080	0	0
SLC6A13	6540	broad.mit.edu	37	12	344336	344336	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr12:344336G>A	uc001qic.1	-	7	804	c.751C>T	c.(751-753)CGA>TGA	p.R251*	SLC6A13_uc009zdj.1_Nonsense_Mutation_p.R251*|SLC6A13_uc010sdl.1_Nonsense_Mutation_p.R159*|SLC6A13_uc010sdm.1_Nonsense_Mutation_p.R132*	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	251	Helical; Name=5; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			GTCACCCCTCGAATTAACAGG	0.537													25	26					0	0	0.003330	0	0
LRTM2	654429	broad.mit.edu	37	12	1940101	1940101	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr12:1940101G>A	uc001qjt.2	+	4	874	c.68G>A	c.(67-69)TGG>TAG	p.W23*	CACNA2D4_uc001qjp.2_Intron|CACNA2D4_uc009zds.1_Intron|CACNA2D4_uc009zdt.1_Intron|CACNA2D4_uc009zdr.1_Intron|LRTM2_uc001qju.2_Nonsense_Mutation_p.W23*|LRTM2_uc010sdx.1_Nonsense_Mutation_p.W23*|LRTM2_uc001qjv.2_Intron	NM_001039029	NP_001034118	Q8N967	LRTM2_HUMAN	leucine-rich repeats and transmembrane domains 2	23						integral to membrane				large_intestine(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.000834)			TCCCACCAAGGGATCACCTGC	0.592													7	21					0	0	0.003080	0	0
KLRC4	8302	broad.mit.edu	37	12	10560383	10560383	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr12:10560383G>A	uc001qye.2	-	4	528	c.346C>T	c.(346-348)CAT>TAT	p.H116Y	KLRK1_uc001qyc.2_5'UTR|KLRK1_uc009zhk.2_5'UTR|KLRK1_uc001qyd.2_5'UTR	NM_013431	NP_038459	O43908	NKG2F_HUMAN	killer cell lectin-like receptor subfamily C,	116	Extracellular (Potential).				cellular defense response	integral to membrane	binding|receptor activity				0						TGGCCACAATGACGTGCTAAA	0.318													63	91					0	0	0.003610	0	0
ETV6	2120	broad.mit.edu	37	12	12037444	12037444	+	Nonsense_Mutation	SNP	C	T	T	rs141938078	byFrequency	TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr12:12037444C>T	uc001qzz.2	+	6	1349	c.1075C>T	c.(1075-1077)CGA>TGA	p.R359*	ETV6_uc001raa.1_Intron	NM_001987	NP_001978	P41212	ETV6_HUMAN	ets variant 6	359	ETS.					cytoplasm|nucleolus	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		ETV6/NTRK3(234)|ETV6/JAK2(11)	soft_tissue(85)|kidney(66)|breast(55)|salivary_gland(26)|haematopoietic_and_lymphoid_tissue(13)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)|pancreas(1)	250		all_cancers(2;1.88e-12)|Acute lymphoblastic leukemia(2;6.91e-39)|all_hematologic(2;2.7e-36)				AAACTTCATCCGATGGGAGGA	0.463			T	NTRK3|RUNX1|PDGFRB|ABL1|MN1|ABL2|FACL6|CHIC2|ARNT|JAK2|EVI1|CDX2|STL|HLXB9|MDS2|PER1|SYK|TTL|FGFR3|PAX5	congenital fibrosarcoma|multiple leukemia and lymphoma| secretory breast|MDS|ALL								60	71					0	0	0.003610	0	0
PDE3A	5139	broad.mit.edu	37	12	20799828	20799828	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr12:20799828G>A	uc001reh.1	+	12	2531	c.2509G>A	c.(2509-2511)GAT>AAT	p.D837N		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	837	Catalytic (By similarity).	Divalent metal cation 2 (By similarity).|Divalent metal cation 1 (By similarity).			lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	AGCCATGCACGATTATGATCA	0.418													28	125					0	0	0.007291	0	0
BIN2	51411	broad.mit.edu	37	12	51696549	51696549	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr12:51696549G>A	uc001ryg.2	-	4	285	c.233C>T	c.(232-234)TCA>TTA	p.S78L	BIN2_uc009zlz.2_Missense_Mutation_p.S78L|BIN2_uc001ryh.2_5'UTR|BIN2_uc010sng.1_Missense_Mutation_p.S52L	NM_016293	NP_057377	Q9UBW5	BIN2_HUMAN	bridging integrator 2	78	BAR.					cytoplasm	protein binding			ovary(1)	1						CACTCTTTTTGAACTTTCATG	0.468													80	55					0	0	0.003610	0	0
ESYT1	23344	broad.mit.edu	37	12	56530608	56530608	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr12:56530608C>T	uc001sjq.2	+	16	1763	c.1713C>T	c.(1711-1713)ATC>ATT	p.I571I	ESYT1_uc001sjr.2_Silent_p.I581I	NM_015292	NP_056107	Q9BSJ8	ESYT1_HUMAN	extended synaptotagmin-like protein 1	571						integral to membrane				ovary(4)|skin(1)	5						CAGAACTCATCCTGGACCAGT	0.552													34	38					0	0	0.002096	0	0
IFNG	3458	broad.mit.edu	37	12	68551791	68551791	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr12:68551791G>A	uc001stw.1	-	3	394	c.268C>T	c.(268-270)CAA>TAA	p.Q90*		NM_000619	NP_000610	P01579	IFNG_HUMAN	interferon, gamma precursor	90					cell cycle arrest|interferon-gamma-mediated signaling pathway|negative regulation of interleukin-17 production|negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of metanephric nephron tubule epithelial cell differentiation|negative regulation of smooth muscle cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of fructose 1,6-bisphosphate 1-phosphatase activity|positive regulation of fructose 1,6-bisphosphate metabolic process|positive regulation of interleukin-12 production|positive regulation of interleukin-23 production|positive regulation of killing of cells of other organism|positive regulation of membrane protein ectodomain proteolysis|positive regulation of mesenchymal cell proliferation|positive regulation of nitric oxide biosynthetic process|positive regulation of osteoclast differentiation|positive regulation of peptidyl-serine phosphorylation of STAT protein|positive regulation of smooth muscle cell apoptosis|positive regulation of tumor necrosis factor (ligand) superfamily member 11 production|positive regulation of tyrosine phosphorylation of Stat1 protein|positive regulation of vitamin D biosynthetic process|protein import into nucleus, translocation|regulation of insulin secretion|regulation of interferon-gamma-mediated signaling pathway|response to virus	extracellular space	cytokine activity|interferon-gamma receptor binding				0			Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.018)	GBM - Glioblastoma multiforme(7;0.000829)	Glucosamine(DB01296)|Interferon gamma-1b(DB00033)|Simvastatin(DB00641)	ACACTCTTTTGGATGCTCTGG	0.363													37	60					0	0	0.003271	0	0
SLC35E3	55508	broad.mit.edu	37	12	69158494	69158494	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr12:69158494T>C	uc001suh.2	+	5	988	c.766T>C	c.(766-768)TTC>CTC	p.F256L		NM_018656	NP_061126	Q7Z769	S35E3_HUMAN	solute carrier family 35, member E2	256	Helical; (Potential).					integral to membrane					0	Breast(13;2.31e-06)|Renal(347;0.0684)		Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.00372)			CTATAACATGTTCGGACACTT	0.348													35	39					0	0	0.007835	0	0
LGR5	8549	broad.mit.edu	37	12	71971717	71971717	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr12:71971717G>A	uc001swl.2	+	14	1269	c.1221G>A	c.(1219-1221)TGG>TGA	p.W407*	LGR5_uc001swm.2_Nonsense_Mutation_p.W383*|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	407	LRR 15.|Extracellular (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						ATTTGGCTTGGAACAAAATTG	0.308													130	495					0	0	0.003610	0	0
SELPLG	6404	broad.mit.edu	37	12	109016855	109016856	+	Missense_Mutation	DNP	AA	GG	GG			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr12:109016855_109016856AA>GG	uc001tni.2	-	2	1388_1389	c.1228_1229TT>CC	c.(1228-1230)TTC>CCC	p.F410P	SELPLG_uc001tnh.2_Missense_Mutation_p.F400P|SELPLG_uc010sxe.1_Missense_Mutation_p.F426P	NM_003006	NP_002997	Q14242	SELPL_HUMAN	selectin P ligand	410	Cytoplasmic (Potential).				blood coagulation|cellular response to interleukin-6	integral to plasma membrane|membrane fraction	bacterial cell surface binding|receptor binding				0						CTAAGGGAGGAAGCTGTGCAGG	0.653													4	13					0	0	0.004672	0	0
CORO1C	23603	broad.mit.edu	37	12	109052620	109052620	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr12:109052620T>A	uc001tnj.2	-	5	620	c.524A>T	c.(523-525)GAC>GTC	p.D175V	CORO1C_uc009zva.2_Missense_Mutation_p.D228V|CORO1C_uc010sxf.1_Missense_Mutation_p.D138V	NM_014325	NP_055140	Q9ULV4	COR1C_HUMAN	coronin, actin binding protein, 1C isoform 1	175	WD 3.				actin cytoskeleton organization|phagocytosis|signal transduction	actin cytoskeleton	actin filament binding			skin(3)	3						GTAAATCATGTCTGAATGCAT	0.433													45	53					0	0	0.002222	0	0
SLC24A6	80024	broad.mit.edu	37	12	113770601	113770601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr12:113770601C>T	uc001tvc.2	-	2	293	c.83G>A	c.(82-84)AGG>AAG	p.R28K	SLC24A6_uc001tvd.1_Missense_Mutation_p.R28K	NM_024959	NP_079235	Q6J4K2	NCKX6_HUMAN	solute carrier family 24 member 6 precursor	28	Extracellular (Potential).				response to stimulus|sodium ion transport	integral to membrane|plasma membrane	calcium:cation antiporter activity			central_nervous_system(1)	1						AGACGAGCCCCTAGTCCCAGA	0.607													16	38					0	0	0.004990	0	0
TUBA3C	7278	broad.mit.edu	37	13	19751121	19751121	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr13:19751121G>A	uc009zzj.2	-	4	1051	c.1002C>T	c.(1000-1002)ACC>ACT	p.T334T		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	334					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		TGGTCTTGATGGTGGCGATGG	0.527													18	37					0	0	0.004990	0	0
C1QTNF9	338872	broad.mit.edu	37	13	24895885	24895885	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr13:24895885C>T	uc001upj.2	+	4	1042	c.981C>T	c.(979-981)TTC>TTT	p.F327F	C1QTNF9_uc001upe.2_RNA	NM_178540	NP_848635	P0C862	C1T9A_HUMAN	C1q and tumor necrosis factor related protein 9	327	C1q.					collagen	hormone activity				0		all_cancers(29;3.55e-20)|all_epithelial(30;4.25e-17)|all_lung(29;1.04e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.00565)|Epithelial(112;0.027)|OV - Ovarian serous cystadenocarcinoma(117;0.115)|Lung(94;0.159)		TCACAGGGTTCCTTCTGTTCA	0.483													32	67					0	0	0.006999	0	0
RNF17	56163	broad.mit.edu	37	13	25433165	25433165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr13:25433165G>A	uc001upr.2	+	26	3678	c.3637G>A	c.(3637-3639)GAA>AAA	p.E1213K	RNF17_uc010tdd.1_Missense_Mutation_p.E1072K|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.E1209K|RNF17_uc001ups.2_Missense_Mutation_p.E1152K|RNF17_uc010aac.2_Missense_Mutation_p.E411K|RNF17_uc010aad.2_Missense_Mutation_p.E265K	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	1213					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		AATGACAAATGAAATTCAAAG	0.308													7	21					0	0	0.001984	0	0
MTUS2	23281	broad.mit.edu	37	13	29598914	29598914	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr13:29598914G>A	uc001usl.3	+	1	167	c.109G>A	c.(109-111)GAA>AAA	p.E37K		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	27						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						AAATAATAATGAAAGCATCTT	0.458													12	37					0	0	0.000978	0	0
PCDH8	5100	broad.mit.edu	37	13	53420448	53420448	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr13:53420448G>A	uc001vhi.2	-	1	2327	c.2124C>T	c.(2122-2124)TTC>TTT	p.F708F	PCDH8_uc001vhj.2_Silent_p.F708F	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	708	Extracellular (Potential).|Cadherin 6.				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		CTGTTACCACGAAGCTGACAG	0.726													9	16					0	0	0.004482	0	0
MYCBP2	23077	broad.mit.edu	37	13	77636771	77636771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr13:77636771G>A	uc001vkf.2	-	75	12711	c.12620C>T	c.(12619-12621)TCG>TTG	p.S4207L	MYCBP2_uc010aev.2_Missense_Mutation_p.S3611L|MYCBP2_uc001vke.2_Missense_Mutation_p.S824L	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	4207					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		CCATCTCCCCGAGGAGAGACG	0.423													7	72					0	0	0.003080	0	0
TFDP1	7027	broad.mit.edu	37	13	114287486	114287486	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr13:114287486C>T	uc001vtw.2	+	6	572	c.360C>T	c.(358-360)TCC>TCT	p.S120S	TFDP1_uc010tkd.1_Silent_p.S25S|TFDP1_uc010tke.1_Silent_p.S25S|TFDP1_uc001vty.3_Silent_p.S120S|TFDP1_uc001vtx.2_5'UTR|TFDP1_uc010agx.2_Silent_p.S120S	NM_007111	NP_009042	Q14186	TFDP1_HUMAN	transcription factor Dp-1	120	Potential.				cell proliferation|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|regulation of transcription from RNA polymerase II promoter	transcription factor complex	DNA binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding			lung(4)|ovary(2)|skin(1)	7	Lung NSC(43;0.0113)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.132)|all_epithelial(44;0.0731)|all_lung(25;0.149)|Breast(118;0.153)	all cancers(43;0.0576)			GGCATTTCTCCATGAAGGTCT	0.522										TSP Lung(29;0.18)			12	21					0	0	0.001368	0	0
MYH7	4625	broad.mit.edu	37	14	23894119	23894119	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr14:23894119C>T	uc001wjx.2	-	22	2644	c.2538G>A	c.(2536-2538)GAG>GAA	p.E846E		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	846	Potential.		E -> Q (in CMH1).		adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CCATCTCCTTCTCTCTTTCTG	0.547													22	46					0	0	0.003954	0	0
RALGAPA1	253959	broad.mit.edu	37	14	36103869	36103870	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr14:36103869_36103870GG>TA	uc001wti.2	-	32	4778_4779	c.4387_4388CC>TA	c.(4387-4389)CCT>TAT	p.P1463Y	RALGAPA1_uc010amp.2_RNA|RALGAPA1_uc001wtj.2_Missense_Mutation_p.P1463Y|RALGAPA1_uc010tpv.1_Missense_Mutation_p.P1476Y|RALGAPA1_uc010tpw.1_Missense_Mutation_p.P1510Y	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	1463	Minimal domain that binds to TCF3/E12 (By similarity).				activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						ATGCATAAAAGGATCATAATCT	0.416													12	25					0	0	0.004672	0	0
RIN3	79890	broad.mit.edu	37	14	93154411	93154411	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr14:93154411C>T	uc001yap.2	+	10	2924	c.2772C>T	c.(2770-2772)TTC>TTT	p.F924F	RIN3_uc010auk.2_Silent_p.F586F|RIN3_uc001yaq.2_Silent_p.F849F	NM_024832	NP_079108	Q8TB24	RIN3_HUMAN	Ras and Rab interactor 3	924	Ras-associating.				endocytosis|signal transduction	cytoplasmic membrane-bounded vesicle|early endosome	GTPase activator activity|Ras GTPase binding			lung(2)|ovary(1)	3		all_cancers(154;0.0701)				ACCGGCTGTTCGTGCTGGTGG	0.731													8	13					0	0	0.006214	0	0
LOC646214	646214	broad.mit.edu	37	15	21937983	21937983	+	RNA	SNP	C	T	T	rs141885846	by1000genomes	TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr15:21937983C>T	uc010tzj.1	-	1		c.2757G>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						TATGCCTGGGCTTTTTCTCCT	0.448													38	448					0	0	0.003214	0	0
MAGEL2	54551	broad.mit.edu	37	15	23889835	23889835	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr15:23889835G>C	uc001ywj.3	-	1	1341	c.1246C>G	c.(1246-1248)CCC>GCC	p.P416A		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		TCATCCAAGGGAGACAAGGGC	0.572													17	23					0	0	0.006122	0	0
C15orf2	23742	broad.mit.edu	37	15	24921149	24921149	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr15:24921149C>T	uc001ywo.2	+	1	609	c.135C>T	c.(133-135)CGC>CGT	p.R45R		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	45					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCACCCCGCGCCCTTTCCGCG	0.766													12	27					0	0	0.004007	0	0
MTMR10	54893	broad.mit.edu	37	15	31239448	31239448	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr15:31239448G>A	uc001zfh.1	-	14	1531	c.1433C>T	c.(1432-1434)CCT>CTT	p.P478L	MTMR10_uc010ubk.1_5'UTR|MTMR10_uc001zfg.1_Missense_Mutation_p.P59L|MTMR10_uc010azx.1_Missense_Mutation_p.P230L|MTMR10_uc001zfi.1_Missense_Mutation_p.P230L|MTMR10_uc001zfj.2_Missense_Mutation_p.P396L|MTMR10_uc001zfk.2_Missense_Mutation_p.P230L	NM_017762	NP_060232	Q9NXD2	MTMRA_HUMAN	myotubularin related protein 10	478	Myotubularin phosphatase.						phosphatase activity			ovary(1)	1		all_lung(180;2.81e-11)		all cancers(64;7.26e-15)|Epithelial(43;7.2e-11)|GBM - Glioblastoma multiforme(186;0.000158)|BRCA - Breast invasive adenocarcinoma(123;0.00426)|Lung(196;0.174)		AAAAGCTGCAGGATATTGTTC	0.458													15	41					0	0	0.002450	0	0
THBS1	7057	broad.mit.edu	37	15	39874527	39874527	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr15:39874527C>T	uc001zkh.2	+	3	380	c.201C>T	c.(199-201)ATC>ATT	p.I67I		NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	67	TSP N-terminal.|Heparin-binding.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	CCAACCTGATCCCCCCTGTGC	0.622													7	34					0	0	0.001984	0	0
SLC27A2	11001	broad.mit.edu	37	15	50474656	50474656	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr15:50474656G>A	uc001zxw.2	+	1	264	c.32G>A	c.(31-33)GGA>GAA	p.G11E	SLC27A2_uc010bes.2_Missense_Mutation_p.G11E	NM_003645	NP_003636	O14975	S27A2_HUMAN	solute carrier family 27 (fatty acid	11	Helical; (Potential).				bile acid biosynthetic process|fatty acid alpha-oxidation	endoplasmic reticulum membrane|integral to membrane|peroxisomal matrix|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity|phytanate-CoA ligase activity|pristanate-CoA ligase activity			ovary(1)|skin(1)	2		all_lung(180;0.00177)		all cancers(107;1.16e-06)|GBM - Glioblastoma multiforme(94;0.000113)		GTCCTGGCGGGACTGCTGTTC	0.667													5	16					0	0	0.000602	0	0
SCG3	29106	broad.mit.edu	37	15	51993377	51993377	+	Silent	SNP	A	G	G			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr15:51993377A>G	uc002abh.2	+	10	1551	c.1143A>G	c.(1141-1143)GGA>GGG	p.G381G	SCG3_uc010ufz.1_Silent_p.G149G	NM_013243	NP_037375	Q8WXD2	SCG3_HUMAN	secretogranin III isoform 1 precursor	381					platelet activation|platelet degranulation	extracellular region|stored secretory granule				ovary(1)	1				all cancers(107;0.00488)		AGGAATATGGAAGCTTGAAGG	0.413													24	64					0	0	0.002780	0	0
UNC13C	440279	broad.mit.edu	37	15	54625970	54625970	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr15:54625970C>T	uc002ack.2	+	14	4500	c.4500C>T	c.(4498-4500)AAC>AAT	p.N1500N	UNC13C_uc002acl.2_Silent_p.N330N	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1500					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		ACCAGGAAAACTTTCCTGCAA	0.338													4	17					0	0	0.000248	0	0
LDHAL6B	92483	broad.mit.edu	37	15	59499593	59499593	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr15:59499593G>A	uc002agb.2	+	1	552	c.454G>A	c.(454-456)GGA>AGA	p.G152R	MYO1E_uc002aga.2_Intron	NM_033195	NP_149972	Q9BYZ2	LDH6B_HUMAN	lactate dehydrogenase A-like 6B	152					glycolysis	cytoplasm	L-lactate dehydrogenase activity|protein binding				0					NADH(DB00157)	CCAAGAAAAGGGAGAAACGCG	0.423													28	70					0	0	0.007291	0	0
PIAS1	8554	broad.mit.edu	37	15	68434638	68434639	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr15:68434638_68434639GG>AT	uc002aqz.2	+	4	661_662	c.565_566GG>AT	c.(565-567)GGG>ATG	p.G189M	PIAS1_uc010ujx.1_Missense_Mutation_p.G189M	NM_016166	NP_057250	O75925	PIAS1_HUMAN	protein inhibitor of activated STAT, 1	189	PINIT.				androgen receptor signaling pathway|interferon-gamma-mediated signaling pathway|JAK-STAT cascade|positive regulation of protein sumoylation|positive regulation of transcription, DNA-dependent|regulation of interferon-gamma-mediated signaling pathway|transcription, DNA-dependent	nuclear speck	androgen receptor binding|DNA binding|enzyme binding|SUMO ligase activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)	2						GGATATTTCTGGGACCAAATGT	0.342													8	21					0	0	0.004672	0	0
TMC3	342125	broad.mit.edu	37	15	81627285	81627285	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr15:81627285C>T	uc002bgo.1	-	21	2235	c.2235G>A	c.(2233-2235)AAG>AAA	p.K745K	TMC3_uc010blr.1_RNA	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	745	Cytoplasmic (Potential).					integral to membrane				ovary(1)|liver(1)	2						TTGGAAGCTTCTTGGTGCTTT	0.547													4	47					0	0	0.000602	0	0
ACAN	176	broad.mit.edu	37	15	89401563	89401563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr15:89401563G>A	uc010upo.1	+	12	6121	c.5747G>A	c.(5746-5748)AGC>AAC	p.S1916N	ACAN_uc010upp.1_Missense_Mutation_p.S1916N|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1916					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			ATTGGGAGCAGCCTGCCCTCG	0.522													15	53					0	0	0.003163	0	0
TTLL13	440307	broad.mit.edu	37	15	90794035	90794035	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr15:90794035C>T	uc002bpd.1	+	2	461	c.173C>T	c.(172-174)GCC>GTC	p.A58V	TTLL13_uc002bpe.1_RNA	NM_001029964	NP_001025135	A6NNM8	TTL13_HUMAN	tubulin tyrosine ligase-like family, member 13	58					protein modification process		ATP binding|tubulin-tyrosine ligase activity				0	Melanoma(11;0.00551)|Lung NSC(78;0.0178)|all_lung(78;0.0378)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|BRCA - Breast invasive adenocarcinoma(143;0.0323)|Kidney(142;0.0514)			CCCATTATGGCCACAAAAATT	0.468													25	105					0	0	0.005443	0	0
WDR90	197335	broad.mit.edu	37	16	716594	716594	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr16:716594C>T	uc002cii.1	+	38	4934	c.4880C>T	c.(4879-4881)ACG>ATG	p.T1627M	WDR90_uc002cij.1_Intron|WDR90_uc002cil.1_RNA|WDR90_uc002cin.1_Missense_Mutation_p.T242M|WDR90_uc010uul.1_Intron|WDR90_uc002cio.1_Missense_Mutation_p.T226M|WDR90_uc010bqx.1_Intron|RHOT2_uc010uum.1_5'Flank|RHOT2_uc002cip.2_5'Flank|RHOT2_uc002ciq.2_5'Flank	NM_145294	NP_660337	Q96KV7	WDR90_HUMAN	WD repeat domain 90	1627										ovary(1)	1		Hepatocellular(780;0.0218)				CCTGCCACCACGGAGGTAAAC	0.652													18	14					0	0	0.001523	0	0
CACNA1H	8912	broad.mit.edu	37	16	1270155	1270155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr16:1270155G>A	uc002cks.2	+	35	6471	c.6223G>A	c.(6223-6225)GGA>AGA	p.G2075R	CACNA1H_uc002ckt.2_Missense_Mutation_p.G2069R|CACNA1H_uc002cku.2_Missense_Mutation_p.G770R|CACNA1H_uc010brj.2_Missense_Mutation_p.G786R|CACNA1H_uc002ckv.2_Missense_Mutation_p.G764R	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	2075	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	GCATACCTTCGGACAGCGCTG	0.721													11	8					0	0	0.008291	0	0
RRN3	54700	broad.mit.edu	37	16	15166902	15166902	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr16:15166902G>A	uc002dde.2	-	12	1101	c.1033C>T	c.(1033-1035)CGC>TGC	p.R345C	PDXDC1_uc002ddc.2_Intron|RRN3_uc010uzp.1_Missense_Mutation_p.R213C|RRN3_uc010uzq.1_Missense_Mutation_p.R315C	NM_018427	NP_060897	Q9NYV6	RRN3_HUMAN	RRN3 RNA polymerase I transcription factor	345					regulation of transcription, DNA-dependent|transcription initiation from RNA polymerase I promoter	nucleolus|nucleoplasm				ovary(1)	1						ATCAGGTCGCGATATAGATCC	0.383													32	31					0	0	0.006230	0	0
PDILT	204474	broad.mit.edu	37	16	20387405	20387405	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr16:20387405G>A	uc002dhc.1	-	4	751	c.528C>T	c.(526-528)ATC>ATT	p.I176I		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	176					cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						AGAAGCCAACGATGACCAAGG	0.522													21	24					0	0	0.002299	0	0
HS3ST4	9951	broad.mit.edu	37	16	26147374	26147374	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr16:26147374G>A	uc002dof.2	+	2	1568	c.1176G>A	c.(1174-1176)AAG>AAA	p.K392K		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	392	Lumenal (Potential).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		ACAAAACCAAGGGGTTCCCTT	0.512													15	15					0	0	0.002450	0	0
CLN3	1201	broad.mit.edu	37	16	28502851	28502851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr16:28502851G>A	uc002dpo.2	-	2	400	c.77C>T	c.(76-78)CCT>CTT	p.P26L	uc010vct.1_Intron|CLN3_uc002dpl.2_Intron|CLN3_uc010vcu.1_Intron|CLN3_uc002dpn.2_Missense_Mutation_p.P26L|CLN3_uc002dpm.2_Intron|CLN3_uc010vcv.1_Missense_Mutation_p.P26L|CLN3_uc010byd.2_Missense_Mutation_p.P26L|CLN3_uc002dpp.2_Missense_Mutation_p.P26L|CLN3_uc002dpt.1_5'UTR|CLN3_uc002dpq.1_Missense_Mutation_p.P26L|CLN3_uc010bye.1_Missense_Mutation_p.P26L|CLN3_uc002dpr.1_RNA|CLN3_uc010byf.1_RNA|CLN3_uc002dps.1_Missense_Mutation_p.L28F|CLN3_uc002dpu.1_Intron|CLN3_uc002dpw.1_Intron|CLN3_uc010vcw.1_Intron|CLN3_uc002dqa.2_Missense_Mutation_p.P77L|CLN3_uc010vcx.1_5'UTR|CLN3_uc002dpx.1_Missense_Mutation_p.P26L|CLN3_uc002dpy.1_Intron|CLN3_uc002dpz.1_Intron	NM_000086	NP_000077	Q13286	CLN3_HUMAN	ceroid-lipofuscinosis, neuronal 3	26					amyloid precursor protein catabolic process|arginine transport|associative learning|autophagic vacuole fusion|cell death|cellular amino acid metabolic process|cytosolic calcium ion homeostasis|galactosylceramide metabolic process|globoside metabolic process|glucosylceramide metabolic process|ionotropic glutamate receptor signaling pathway|lysosomal lumen acidification|lysosomal lumen pH elevation|negative regulation of catalytic activity|negative regulation of macroautophagy|negative regulation of neuron apoptosis|negative regulation of proteolysis|neuromuscular process controlling balance|neurotransmitter metabolic process|protein catabolic process|protein folding|protein processing|receptor-mediated endocytosis|regulation of action potential|sphingomyelin metabolic process|vacuolar transport	autophagic vacuole|caveola|cytosol|early endosome|Golgi membrane|Golgi stack|integral to endoplasmic reticulum membrane|late endosome|lysosomal membrane|membrane fraction|mitochondrion|neuron projection|nucleus|synaptic vesicle|trans-Golgi network	unfolded protein binding				0						GTCCAACAGAGGGAGCCGGGG	0.632											OREG0023706	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	1					0	0	0.003330	0	0
ASPHD1	253982	broad.mit.edu	37	16	29912768	29912768	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr16:29912768G>A	uc002dut.2	+	1	622	c.476G>A	c.(475-477)TGG>TAG	p.W159*	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_5'Flank|SEZ6L2_uc002dur.3_5'Flank|SEZ6L2_uc002duq.3_5'Flank|SEZ6L2_uc002dus.3_5'Flank|SEZ6L2_uc010vec.1_5'Flank|SEZ6L2_uc010ved.1_5'Flank|ASPHD1_uc002duu.3_RNA|ASPHD1_uc010bzi.2_RNA	NM_181718	NP_859069	Q5U4P2	ASPH1_HUMAN	aspartate beta-hydroxylase domain containing 1	159	Gly-rich.|Lumenal (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity				0						CGCTACTCCTGGGCTGGGATG	0.692													11	23					0	0	0.008291	0	0
CHD9	80205	broad.mit.edu	37	16	53272403	53272403	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr16:53272403C>T	uc002ehb.2	+	11	2946	c.2782C>T	c.(2782-2784)CGT>TGT	p.R928C	CHD9_uc002egy.2_Missense_Mutation_p.R928C|CHD9_uc002eha.1_Missense_Mutation_p.R928C|CHD9_uc002ehc.2_Missense_Mutation_p.R928C|CHD9_uc002ehf.2_Missense_Mutation_p.R42C|CHD9_uc002ehd.2_Missense_Mutation_p.R454C|CHD9_uc002ehe.1_Missense_Mutation_p.R42C	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	928	Helicase ATP-binding.				cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				GAGAGAATTTCGTACGTGGAC	0.403													63	51					0	0	0.003610	0	0
CDH1	999	broad.mit.edu	37	16	68862142	68862142	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr16:68862142C>T	uc002ewg.1	+	14	2354	c.2230C>T	c.(2230-2232)CCA>TCA	p.P744S	CDH1_uc010vlj.1_RNA|CDH1_uc010cfg.1_Missense_Mutation_p.P683S	NM_004360	NP_004351	P12830	CADH1_HUMAN	cadherin 1, type 1 preproprotein	744	Cytoplasmic (Potential).				adherens junction organization|cellular component disassembly involved in apoptosis|cellular response to indole-3-methanol|cellular response to lithium ion|homophilic cell adhesion|negative regulation of cell-cell adhesion|positive regulation of transcription factor import into nucleus|positive regulation of transcription, DNA-dependent|regulation of immune response	actin cytoskeleton|aggresome|apical junction complex|catenin complex|cell-cell adherens junction|endosome|focal adhesion|Golgi apparatus|integral to membrane|internal side of plasma membrane|lateral plasma membrane|perinuclear region of cytoplasm	cell adhesion molecule binding|gamma-catenin binding			breast(148)|stomach(71)|biliary_tract(8)|endometrium(3)|soft_tissue(2)|large_intestine(2)|urinary_tract(2)|oesophagus(2)|ovary(2)|thyroid(1)|central_nervous_system(1)|lung(1)	243		all_neural(199;0.0189)|Ovarian(137;0.0563)		Epithelial(162;8.44e-05)|all cancers(182;0.000404)|OV - Ovarian serous cystadenocarcinoma(108;0.000426)|BRCA - Breast invasive adenocarcinoma(181;0.0261)		CTTACTGCCCCCAGAGGATGA	0.522			Mis|N|F|S		lobular breast|gastric	gastric			Hereditary_Diffuse_Gastric_Cancer				39	47					0	0	0.005524	0	0
HP	3240	broad.mit.edu	37	16	72094402	72094402	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr16:72094402G>A	uc002fbr.3	+	7	878	c.834G>A	c.(832-834)GTG>GTA	p.V278V	TXNL4B_uc010cgl.2_Intron|HP_uc010cgm.2_Silent_p.V219V|HP_uc002fbt.3_Silent_p.V219V|HP_uc002fbu.1_Silent_p.V16V|HP_uc002fbv.3_Silent_p.V189V|HP_uc002fbw.3_Silent_p.V100V|HP_uc002fbx.3_Silent_p.V100V|HPR_uc002fby.2_5'Flank	NM_005143	NP_005134	P00738	HPT_HUMAN	haptoglobin isoform 1 preproprotein	278	Peptidase S1.				cellular iron ion homeostasis|defense response|negative regulation of hydrogen peroxide catabolic process|negative regulation of oxidoreductase activity|positive regulation of cell death|proteolysis|response to hydrogen peroxide	extracellular region|haptoglobin-hemoglobin complex	hemoglobin binding|serine-type endopeptidase activity				0		Renal(780;9.67e-05)|Ovarian(137;0.00327)|Hepatocellular(780;0.114)		BRCA - Breast invasive adenocarcinoma(221;0.00015)|Kidney(780;0.000529)		TAGGGCGTGTGGGTTATGTTT	0.453													29	14					0	0	0.001786	0	0
PRPF8	10594	broad.mit.edu	37	17	1587789	1587789	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr17:1587789G>A	uc002fte.2	-	2	191	c.77C>T	c.(76-78)TCG>TTG	p.S26L		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	26						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		CTTCTCCTCCGACATGTAGTC	0.423													22	48					0	0	0.006320	0	0
ARHGEF15	22899	broad.mit.edu	37	17	8216517	8216517	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr17:8216517C>T	uc002glc.2	+	3	1000	c.879C>T	c.(877-879)TTC>TTT	p.F293F	ARHGEF15_uc002glb.1_3'UTR|ARHGEF15_uc002gld.2_Silent_p.F293F|ARHGEF15_uc010vuw.1_Intron	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15	293					negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						CCACCATTTTCGGGGACCCCC	0.592													7	38					0	0	0.004482	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904114	21904114	+	RNA	SNP	A	G	G	rs75848292		TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr17:21904114A>G	uc002gza.2	+	1		c.53A>G				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						tccggctgccaggagtcgcaa	0													4	12					0	0	0.000248	0	0
MYO18A	399687	broad.mit.edu	37	17	27421799	27421799	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr17:27421799A>C	uc002hdt.1	-	30	4737	c.4579T>G	c.(4579-4581)TCT>GCT	p.S1527A	MYO18A_uc010wbc.1_Missense_Mutation_p.S1069A|MYO18A_uc002hds.2_Missense_Mutation_p.S1069A|MYO18A_uc010csa.1_Missense_Mutation_p.S1527A|MYO18A_uc002hdu.1_Missense_Mutation_p.S1527A	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	1527	Potential.				anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			TCTTGGGAAGAAATGTCCTGG	0.527													27	89					0	0	0.006320	0	0
RAB11FIP4	84440	broad.mit.edu	37	17	29848290	29848290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr17:29848290G>A	uc002hgn.1	+	5	899	c.670G>A	c.(670-672)GAT>AAT	p.D224N	RAB11FIP4_uc002hgo.2_Missense_Mutation_p.D122N	NM_032932	NP_116321	Q86YS3	RFIP4_HUMAN	RAB11 family interacting protein 4 (class II)	224	Necessary for interaction with RAB11A, subcellular location, homo- or heterooligomerization.				cytokinesis|interspecies interaction between organisms|protein transport	cleavage furrow|endocytic vesicle|midbody|recycling endosome membrane	ADP-ribosylation factor binding|calcium ion binding|protein homodimerization activity|Rab GTPase binding			skin(1)	1		all_cancers(10;3.62e-13)|all_epithelial(10;0.000387)|all_lung(9;0.0132)|Breast(31;0.014)|all_hematologic(16;0.015)|Myeloproliferative disorder(56;0.0255)|Acute lymphoblastic leukemia(14;0.0259)|Ovarian(249;0.0423)|Lung NSC(157;0.066)				GGAGGGTGACGATGTGGACTG	0.587													25	63					0	0	0.003330	0	0
CSF3	1440	broad.mit.edu	37	17	38173119	38173119	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr17:38173119C>T	uc002htp.2	+	5	571	c.531C>T	c.(529-531)TTC>TTT	p.F177F	CSF3_uc002hto.2_Silent_p.F174F|CSF3_uc002htq.2_Silent_p.F170F|CSF3_uc010wep.1_Silent_p.F134F	NM_000759	NP_000750	P09919	CSF3_HUMAN	colony stimulating factor 3 isoform a precursor	177					cytokine-mediated signaling pathway|granulocyte differentiation|immune response|positive regulation of cell proliferation	extracellular space	cytokine activity|enzyme binding|granulocyte colony-stimulating factor receptor binding|growth factor activity			ovary(1)	1	Colorectal(19;0.000442)	Myeloproliferative disorder(1115;0.0255)			Filgrastim(DB00099)|Pegfilgrastim(DB00019)	CCTCTGCTTTCCAGCGCCGGG	0.647													13	33					0	0	0.001855	0	0
KRT37	8688	broad.mit.edu	37	17	39577720	39577720	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr17:39577720C>T	uc002hwp.1	-	6	1187	c.1140G>A	c.(1138-1140)CTG>CTA	p.L380L	uc002hwo.1_Intron	NM_003770	NP_003761	O76014	KRT37_HUMAN	keratin 37	380	Coil 2.|Rod.					intermediate filament	structural molecule activity			skin(1)	1		Breast(137;0.000496)				TCTGCCGCTCCAGGTCGGCCC	0.602													15	36					0	0	0.003163	0	0
DHX8	1659	broad.mit.edu	37	17	41599484	41599484	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr17:41599484C>T	uc002idu.1	+	22	3406	c.3333C>T	c.(3331-3333)TTC>TTT	p.F1111F	DHX8_uc010wig.1_Silent_p.F1111F	NM_004941	NP_004932	Q14562	DHX8_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 8	1111						catalytic step 2 spliceosome	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|pancreas(1)	4		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.08)		GCAGTGGGTTCTTCCGTAATG	0.517													27	54					0	0	0.004656	0	0
PLEKHM1	9842	broad.mit.edu	37	17	43552888	43552888	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr17:43552888G>A	uc002ija.2	-	4	671	c.501C>T	c.(499-501)TTC>TTT	p.F167F	PLEKHM1_uc010wjm.1_Silent_p.F139F|PLEKHM1_uc002ijb.2_5'UTR|PLEKHM1_uc010wjn.1_Silent_p.F116F|hsa-mir-4315-1|MI0015844_5'Flank	NM_014798	NP_055613	Q9Y4G2	PKHM1_HUMAN	pleckstrin homology domain containing, family M	167	RUN.				intracellular signal transduction	cytoplasm	metal ion binding				0	Renal(3;0.0405)					GGCCCTGCAGGAAGCTAAGGA	0.607													7	47					0	0	0.001984	0	0
C17orf57	124989	broad.mit.edu	37	17	45487019	45487019	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr17:45487019G>A	uc002iln.2	+	21	2651	c.2240G>A	c.(2239-2241)AGG>AAG	p.R747K	C17orf57_uc002ilm.2_Missense_Mutation_p.R651K	NM_152347	NP_689560	Q8IY85	CQ057_HUMAN	hypothetical protein LOC124989	747							calcium ion binding			breast(1)|central_nervous_system(1)|skin(1)	3						GCAGATTTCAGGAAAGAGGCT	0.308													52	263					0	0	0.003610	0	0
HOXB3	3213	broad.mit.edu	37	17	46627847	46627847	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr17:46627847C>T	uc002inn.2	-	2	1545	c.1145G>A	c.(1144-1146)GGG>GAG	p.G382E	HOXB3_uc010wlm.1_Missense_Mutation_p.G309E|HOXB3_uc010dbf.2_Missense_Mutation_p.G382E|HOXB3_uc010dbg.2_Missense_Mutation_p.G382E|HOXB3_uc002ino.2_Missense_Mutation_p.G382E|HOXB3_uc010wlk.1_Missense_Mutation_p.G250E|HOXB3_uc010wll.1_Missense_Mutation_p.G309E	NM_002146	NP_002137	P14651	HXB3_HUMAN	homeobox B3	382					angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GTCCAGGTTCCCGGAAGGGTG	0.697											OREG0024516	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	41	57					0	0	0.002222	0	0
SPATA20	64847	broad.mit.edu	37	17	48632649	48632649	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr17:48632649C>T	uc002irf.2	+	15	2307	c.2166C>T	c.(2164-2166)GTC>GTT	p.V722V	SPATA20_uc002irc.2_Silent_p.V389V|SPATA20_uc002ire.2_Silent_p.V678V|SPATA20_uc002ird.2_Silent_p.V738V|SPATA20_uc002irg.2_RNA	NM_022827	NP_073738	Q8TB22	SPT20_HUMAN	spermatogenesis associated 20	722					cell differentiation|mannose metabolic process|multicellular organismal development|spermatogenesis	extracellular region	mannose-6-phosphate isomerase activity|protein binding				0	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;9.38e-09)			TGCAGTGCGTCCACTCTGTCT	0.587													23	19					0	0	0.001786	0	0
KIF2B	84643	broad.mit.edu	37	17	51900899	51900899	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr17:51900899G>A	uc002iua.2	+	1	661	c.505G>A	c.(505-507)GAG>AAG	p.E169K	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	169	Potential.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						GCTGCAGCAGGAGATCCGAGC	0.547													35	61					0	0	0.006230	0	0
GH1	2688	broad.mit.edu	37	17	61995424	61995424	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr17:61995424C>T	uc002jdj.2	-	3	306	c.244G>A	c.(244-246)GAG>AAG	p.E82K	GH1_uc002jdi.2_Missense_Mutation_p.E67K|GH1_uc002jdk.2_Intron|GH1_uc002jdl.2_Intron|GH1_uc002jdm.2_Intron|GH1_uc002jdn.2_Missense_Mutation_p.E82K	NM_000515	NP_000506	P01241	SOMA_HUMAN	growth hormone 1 isoform 1	82					glucose transport|growth hormone receptor signaling pathway|JAK-STAT cascade|positive regulation of activation of JAK2 kinase activity|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of MAP kinase activity|positive regulation of multicellular organism growth|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|response to estradiol stimulus	extracellular space	growth factor activity|growth hormone receptor binding|hormone activity|metal ion binding|prolactin receptor binding				0						GGAATAGACTCTGAGAAACAG	0.542													56	159					0	0	0.003610	0	0
ITGB4	3691	broad.mit.edu	37	17	73739891	73739891	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr17:73739891G>A	uc002jpg.2	+	26	3247	c.3060G>A	c.(3058-3060)GGG>GGA	p.G1020G	ITGB4_uc002jph.2_Silent_p.G1020G|ITGB4_uc002jpi.3_Silent_p.G1020G|ITGB4_uc002jpj.2_Silent_p.G1020G	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	1020	Cytoplasmic (Potential).|Calx-beta.				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			TGGACGGCGGGAAGTCCCAGG	0.701													6	20					0	0	0.001168	0	0
ITGB4	3691	broad.mit.edu	37	17	73752699	73752699	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr17:73752699G>A	uc002jpg.2	+	36	5084	c.4897_splice	c.e36+1	p.G1633_splice	ITGB4_uc002jph.2_Splice_Site_p.G1563_splice|ITGB4_uc002jpi.3_Splice_Site_p.G1563_splice|ITGB4_uc002jpj.2_Splice_Site_p.G1616_splice|GALK1_uc010wsi.1_Intron	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor						cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			CCCCTGCCAGGTGAGTTGCCT	0.662													28	39					0	0	0.005443	0	0
SLC16A3	9123	broad.mit.edu	37	17	80194103	80194103	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr17:80194103G>A	uc002kea.2	+	2	358	c.219G>A	c.(217-219)GGG>GGA	p.G73G	SLC16A3_uc002kee.2_Silent_p.G73G|SLC16A3_uc002keb.2_Silent_p.G73G|SLC16A3_uc002kec.2_Silent_p.G73G|SLC16A3_uc002ked.2_Silent_p.G73G	NM_001042422	NP_001035887	O15427	MOT4_HUMAN	solute carrier family 16, member 3	73	Helical; (Potential).				blood coagulation|leukocyte migration|organic anion transport|pyruvate metabolic process	actin cytoskeleton|integral to plasma membrane|membrane fraction|nuclear membrane	secondary active monocarboxylate transmembrane transporter activity|symporter activity			upper_aerodigestive_tract(1)|lung(1)	2	Breast(20;0.00285)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.227)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0149)		Pyruvic acid(DB00119)	TGCTCTACGGGACAGGTGAGG	0.642													7	50					0	0	0.001984	0	0
COLEC12	81035	broad.mit.edu	37	18	346955	346955	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr18:346955G>A	uc002kkm.2	-	5	882	c.667C>T	c.(667-669)CTG>TTG	p.L223L		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	223	Potential.|Extracellular (Potential).				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				GACCGCTGCAGATTCGTGATG	0.483													31	90					0	0	0.002836	0	0
GNAL	2774	broad.mit.edu	37	18	11867202	11867202	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr18:11867202G>A	uc010dkz.2	+	9	902	c.656G>A	c.(655-657)AGA>AAA	p.R219K	GNAL_uc002kqc.2_Missense_Mutation_p.R296K|GNAL_uc002kqd.2_Missense_Mutation_p.R219K|GNAL_uc010wzt.1_Missense_Mutation_p.R12K	NM_001142339	NP_001135811	P38405	GNAL_HUMAN	guanine nucleotide binding protein (G protein),	219					activation of adenylate cyclase activity by dopamine receptor signaling pathway|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception of smell|synaptic transmission	heterotrimeric G-protein complex	adenylate cyclase activity|G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			ovary(1)	1						GATGAGAGGAGAAAATGGATC	0.438													9	40					0	0	0.008291	0	0
LAMA3	3909	broad.mit.edu	37	18	21427530	21427530	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr18:21427530T>A	uc002kuq.2	+	32	4120	c.4034T>A	c.(4033-4035)TTC>TAC	p.F1345Y	LAMA3_uc002kur.2_Missense_Mutation_p.F1345Y	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	1345	Laminin EGF-like 10.|Domain III B.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ACACACTCATTCAGCTTCCAC	0.657													14	24					0	0	0.002450	0	0
DSG4	147409	broad.mit.edu	37	18	28979241	28979241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr18:28979241G>A	uc002kwq.2	+	9	1147	c.1012G>A	c.(1012-1014)GAT>AAT	p.D338N	DSG4_uc002kwr.2_Missense_Mutation_p.D338N	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	338	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TCAGATGCTGGATTATGAACA	0.378													18	85					0	0	0.006122	0	0
FAM108A1	81926	broad.mit.edu	37	19	1881302	1881302	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:1881302G>A	uc002lug.2	-	2	670	c.264C>T	c.(262-264)GTC>GTT	p.V88V	FAM108A1_uc002lud.2_Silent_p.V88V|FAM108A1_uc002lue.2_Silent_p.V88V|FAM108A1_uc002luf.2_Silent_p.V88V	NM_001130111	NP_001123583	Q96GS6	F18A1_HUMAN	hypothetical protein LOC81926 isoform 2	88						extracellular region	hydrolase activity				0		Ovarian(11;0.000137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGTGGGGAAGACCTCGATGG	0.692													10	33					0	0	0.002780	0	0
VAV1	7409	broad.mit.edu	37	19	6833630	6833630	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:6833630G>A	uc002mfu.1	+	17	1799	c.1702G>A	c.(1702-1704)GGG>AGG	p.G568R	VAV1_uc010xjh.1_Missense_Mutation_p.G536R|VAV1_uc010dva.1_Missense_Mutation_p.G568R|VAV1_uc002mfv.1_Missense_Mutation_p.G513R	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor	568					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						TGGCCGACATGGGCAAGGTAC	0.582													35	46					0	0	0.002445	0	0
FBN3	84467	broad.mit.edu	37	19	8175759	8175759	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:8175759C>T	uc002mjf.2	-	33	4324	c.4303G>A	c.(4303-4305)GAA>AAA	p.E1435K		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1435	EGF-like 22; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CGGTCCAGTTCGTAGCCACCA	0.567													33	75					0	0	0.004289	0	0
FBN3	84467	broad.mit.edu	37	19	8191396	8191396	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:8191396G>A	uc002mjf.2	-	19	2531	c.2510C>T	c.(2509-2511)ACC>ATC	p.T837I		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	837	TB 4.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						TGCCCCGAGGGTGGCGCAGCA	0.662													8	17					0	0	0.004482	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8660783	8660783	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:8660783C>T	uc002mkj.1	-	12	1616	c.1342G>A	c.(1342-1344)GGC>AGC	p.G448S	ADAMTS10_uc002mkk.1_Missense_Mutation_p.G80S	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	448	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						AGCCCCAGGCCCGAGCTGCCT	0.602													33	100					0	0	0.002445	0	0
MUC16	94025	broad.mit.edu	37	19	9059418	9059418	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:9059418G>A	uc002mkp.2	-	3	28232	c.28028C>T	c.(28027-28029)TCA>TTA	p.S9343L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9345	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGAGGTGTCTGATGACATTGT	0.512													28	76					0	0	0.005443	0	0
MUC16	94025	broad.mit.edu	37	19	9062966	9062966	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:9062966G>A	uc002mkp.2	-	3	24684	c.24480C>T	c.(24478-24480)TCC>TCT	p.S8160S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8162	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCTGCTAGAGGAGGTGACTT	0.542													16	60					0	0	0.003163	0	0
SMARCA4	6597	broad.mit.edu	37	19	11152082	11152082	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:11152082C>T	uc002mqf.3	+	30	4554	c.4270C>T	c.(4270-4272)CCG>TCG	p.P1424S	SMARCA4_uc010dxp.2_Missense_Mutation_p.P1424S|SMARCA4_uc010dxo.2_Missense_Mutation_p.P1456S|SMARCA4_uc010dxq.2_Missense_Mutation_p.P1391S|SMARCA4_uc010dxr.2_Missense_Mutation_p.P1391S|SMARCA4_uc002mqj.3_Missense_Mutation_p.P1394S|SMARCA4_uc010dxs.2_Missense_Mutation_p.P1394S|SMARCA4_uc002mqh.3_Missense_Mutation_p.P514S	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	1424					chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity			lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				CTCCTCCACCCCGACCACCAG	0.652			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				7	23					0	0	0.003080	0	0
DOCK6	57572	broad.mit.edu	37	19	11326522	11326522	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:11326522G>A	uc002mqs.3	-	31	4017	c.3976C>T	c.(3976-3978)CTG>TTG	p.L1326L	DOCK6_uc010xlq.1_Silent_p.L665L	NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	1326					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						ATGGTACCCAGAATGGCTTCC	0.542													31	61					0	0	0.002096	0	0
CPAMD8	27151	broad.mit.edu	37	19	17091331	17091331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:17091331G>A	uc002nfb.2	-	14	1734	c.1702C>T	c.(1702-1704)CGT>TGT	p.R568C		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	521						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						TGTGTTAAACGAATCGGTTTC	0.592													11	42					0	0	0.001855	0	0
ELL	8178	broad.mit.edu	37	19	18557179	18557180	+	Missense_Mutation	DNP	CC	TT	TT	rs115932129	byFrequency	TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:18557179_18557180CC>TT	uc002njh.2	-	10	1715_1716	c.1643_1644GG>AA	c.(1642-1644)CGG>CAA	p.R548Q	ELL_uc010ebq.2_Missense_Mutation_p.R491Q|ELL_uc002njg.2_Missense_Mutation_p.R415Q	NM_006532	NP_006523	P55199	ELL_HUMAN	elongation factor RNA polymerase II	548					positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	Cajal body|nuclear speck|transcription elongation factor complex	protein binding			lung(1)	1				GBM - Glioblastoma multiforme(1328;7.81e-07)		GGGTGAACCGCCGCGTGATGCG	0.658			T	MLL	AL								7	19					0	0	0.004672	0	0
ZNF536	9745	broad.mit.edu	37	19	31039424	31039424	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:31039424G>A	uc002nsu.1	+	4	3036	c.2898G>A	c.(2896-2898)AGG>AGA	p.R966R	ZNF536_uc010edd.1_Silent_p.R966R	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	966					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CCTCCCAGAGGAAGTCCGAGA	0.577													21	91					0	0	0.002299	0	0
ZNF507	22847	broad.mit.edu	37	19	32845425	32845425	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:32845425C>T	uc002nte.2	+	3	1961	c.1689C>T	c.(1687-1689)ACC>ACT	p.T563T	ZNF507_uc002ntc.2_Silent_p.T563T|ZNF507_uc010xrn.1_Silent_p.T563T|ZNF507_uc002ntd.2_Silent_p.T563T	NM_001136156	NP_001129628	Q8TCN5	ZN507_HUMAN	zinc finger protein 507	563					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)|kidney(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(110;0.162)					GCAACTCCACCTTGGTAGCAC	0.433													21	41					0	0	0.002780	0	0
CD22	933	broad.mit.edu	37	19	35827096	35827096	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:35827096G>A	uc010edt.2	+	4	647	c.570G>A	c.(568-570)TCG>TCA	p.S190S	CD22_uc010xst.1_Silent_p.S18S|CD22_uc010edu.2_Silent_p.S190S|CD22_uc010edv.2_Silent_p.S190S|CD22_uc002nzb.3_Silent_p.S190S|CD22_uc010edx.2_5'Flank	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	190	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	CTGTCACCTCGACCTCCTTGA	0.547													24	46					0	0	0.002299	0	0
ZNF790	388536	broad.mit.edu	37	19	37309763	37309763	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:37309763G>A	uc002oew.2	-	5	1602	c.1483C>T	c.(1483-1485)CGA>TGA	p.R495*	uc002oev.1_Intron	NM_206894	NP_996777	Q6PG37	ZN790_HUMAN	zinc finger protein 790	495	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|skin(1)	2	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			TTCTGGTGTCGATTAAGTTCT	0.393													19	40					0	0	0.001523	0	0
SELV	348303	broad.mit.edu	37	19	40009605	40009605	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:40009605C>T	uc010xvc.1	+	5	1051	c.951C>T	c.(949-951)GTC>GTT	p.V317V		NM_182704	NP_874363	P59797	SELV_HUMAN	selenoprotein V	317					cell redox homeostasis		selenium binding				0	all_cancers(60;4.04e-06)|all_lung(34;1.77e-07)|Lung NSC(34;2.09e-07)|all_epithelial(25;1.13e-05)|Ovarian(47;0.159)		Epithelial(26;8.61e-26)|all cancers(26;2.76e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			GGAGACTGGTCCATTCCAAGA	0.587													41	99					0	0	0.002522	0	0
AKT2	208	broad.mit.edu	37	19	40747872	40747872	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:40747872G>A	uc002onf.2	-	6	808	c.546C>T	c.(544-546)ATC>ATT	p.I182I	AKT2_uc010egs.2_Silent_p.I182I|AKT2_uc010egt.2_Silent_p.I120I|AKT2_uc010xvj.1_Silent_p.I120I|AKT2_uc010egu.1_Silent_p.I120I|AKT2_uc010xvk.1_Silent_p.I182I|AKT2_uc002one.2_Silent_p.I78I	NM_001626	NP_001617	P31751	AKT2_HUMAN	AKT2 kinase	182	Protein kinase.				insulin receptor signaling pathway|negative regulation of plasma membrane long-chain fatty acid transport|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process	cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)	2			Lung(22;0.000499)			CCTTCCGCAGGATCTTCATGG	0.592			A		ovarian|pancreatic 								62	161					0	0	0.003610	0	0
CEACAM7	1087	broad.mit.edu	37	19	42190876	42190876	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:42190876G>A	uc002ori.1	-	2	343	c.341C>T	c.(340-342)ACC>ATC	p.T114I	CEACAM7_uc010ehx.2_Missense_Mutation_p.T114I|CEACAM7_uc010ehy.1_Missense_Mutation_p.T114I	NM_006890	NP_008821	Q14002	CEAM7_HUMAN	carcinoembryonic antigen-related cell adhesion	114	Ig-like V-type.					anchored to membrane|integral to membrane|plasma membrane				ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.0027)|all cancers(3;0.00979)|Epithelial(262;0.0366)		GTCATTGTGGGTGACGTTCTG	0.428													44	112					0	0	0.003610	0	0
CEACAM5	1048	broad.mit.edu	37	19	42218936	42218936	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:42218936G>A	uc002ork.2	+	3	592	c.471G>A	c.(469-471)GTG>GTA	p.V157V	CEACAM5_uc010ehz.1_Silent_p.V157V|CEACAM5_uc002orj.1_Silent_p.V157V|CEACAM5_uc002orl.2_Silent_p.V157V	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	157	Ig-like 2.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		CCAAACCCGTGGAGGACAAGG	0.562													30	98					0	0	0.002096	0	0
CEACAM8	1088	broad.mit.edu	37	19	43097693	43097693	+	Missense_Mutation	SNP	G	A	A	rs146875157	byFrequency	TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:43097693G>A	uc002oud.2	-	2	526	c.424C>T	c.(424-426)CCG>TCG	p.P142S	uc010eif.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron	NM_001816	NP_001807	P31997	CEAM8_HUMAN	carcinoembryonic antigen-related cell adhesion	142	Ig-like V-type.				immune response	anchored to membrane|extracellular space|integral to plasma membrane				ovary(1)	1		Prostate(69;0.00899)				AATCACTCACGATGTACGCTG	0.498													17	60					0	0	0.007413	0	0
PSG9	5678	broad.mit.edu	37	19	43762387	43762387	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:43762387C>T	uc002owd.3	-	5	1309	c.1210G>A	c.(1210-1212)GAA>AAA	p.E404K	PSG9_uc002owe.3_Missense_Mutation_p.E311K|PSG9_uc010xwm.1_Missense_Mutation_p.E311K|PSG9_uc002owf.3_Missense_Mutation_p.E218K|PSG9_uc002owg.2_Missense_Mutation_p.E311K|PSG9_uc002owh.2_Missense_Mutation_p.E218K	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	404	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TTGGAGATTTCCTTGCCAGTG	0.448													60	139					0	0	0.003610	0	0
CCDC9	26093	broad.mit.edu	37	19	47763860	47763860	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:47763860C>T	uc010xym.1	+	5	433	c.226C>T	c.(226-228)CCT>TCT	p.P76S		NM_015603	NP_056418	Q9Y3X0	CCDC9_HUMAN	coiled-coil domain containing 9	76											0		all_cancers(25;0.0432)|all_epithelial(76;0.00812)|Medulloblastoma(540;0.0208)|all_neural(266;0.0416)|Hepatocellular(1079;0.114)		OV - Ovarian serous cystadenocarcinoma(262;8.51e-95)|Epithelial(262;1.15e-92)|all cancers(93;7.67e-84)|GBM - Glioblastoma multiforme(486;0.024)|STAD - Stomach adenocarcinoma(1328;0.183)		GAACCTGGGTCCTTCCCGGAG	0.687													23	49					0	0	0.003954	0	0
PNKP	11284	broad.mit.edu	37	19	50367223	50367223	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:50367223G>A	uc002pqh.2	-	6	794	c.742C>T	c.(742-744)CAG>TAG	p.Q248*	PNKP_uc002pqg.2_Nonsense_Mutation_p.Q29*|PNKP_uc002pqi.2_Nonsense_Mutation_p.Q209*|PNKP_uc002pqj.2_Nonsense_Mutation_p.Q248*|PNKP_uc010enm.2_Nonsense_Mutation_p.Q248*|PNKP_uc002pqk.2_Nonsense_Mutation_p.Q248*	NM_007254	NP_009185	Q96T60	PNKP_HUMAN	polynucleotide kinase 3' phosphatase	248					DNA damage response, detection of DNA damage|DNA-dependent DNA replication|nucleotide-excision repair, DNA damage removal|response to oxidative stress|response to radiation	nucleolus	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|damaged DNA binding|double-stranded DNA binding|endonuclease activity|nucleotide kinase activity|polynucleotide 3'-phosphatase activity|protein binding			ovary(1)|kidney(1)	2		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0118)|OV - Ovarian serous cystadenocarcinoma(262;0.0134)		AGCCATACCTGGAAGGGGACC	0.632								Other_BER_factors					9	18					0	0	0.008291	0	0
CD33	945	broad.mit.edu	37	19	51729249	51729249	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:51729249C>T	uc002pwa.2	+	3	649	c.609C>T	c.(607-609)CCC>CCT	p.P203P	CD33_uc010eos.1_Silent_p.P203P|CD33_uc010eot.1_Silent_p.P76P|CD33_uc010eou.1_RNA	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor	203	Extracellular (Potential).|Ig-like C2-type.				cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	CCCCACGGCCCCAGGACCACG	0.612													7	37					0	0	0.003080	0	0
ZNF160	90338	broad.mit.edu	37	19	53571746	53571746	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:53571746G>A	uc010eqk.2	-	7	2457	c.2041C>T	c.(2041-2043)CAA>TAA	p.Q681*	ZNF160_uc002qaq.3_Nonsense_Mutation_p.Q681*|ZNF160_uc002qar.3_Nonsense_Mutation_p.Q681*	NM_001102603	NP_001096073	Q9HCG1	ZN160_HUMAN	zinc finger protein 160	681	C2H2-type 16.				hemopoiesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(134;0.02)		TTGCCACATTGATTACATTTG	0.433													25	75					0	0	0.003330	0	0
LILRA4	23547	broad.mit.edu	37	19	54849758	54849758	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:54849758C>T	uc002qfj.2	-	3	321	c.264G>A	c.(262-264)ATG>ATA	p.M88I	LILRA4_uc002qfi.2_Missense_Mutation_p.M22I	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	88	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		GTTCCCACATCATGGATGGGA	0.527													25	77					0	0	0.005443	0	0
LILRB4	11006	broad.mit.edu	37	19	55175661	55175661	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:55175661C>T	uc002qgp.2	+	4	742	c.380C>T	c.(379-381)TCA>TTA	p.S127L	LILRB4_uc002qgq.2_Missense_Mutation_p.S127L|LILRB4_uc010ers.1_Missense_Mutation_p.S40L|LILRB4_uc002qgr.2_Missense_Mutation_p.S168L|LILRB4_uc010ert.2_Missense_Mutation_p.S168L|LILRB4_uc010eru.2_Missense_Mutation_p.S156L	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	127	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		CCCACCCTTTCAGCCCTGCCG	0.582													21	75					0	0	0.001523	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55378025	55378025	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:55378025C>T	uc002qhl.3	+	9	1270	c.1207C>T	c.(1207-1209)CAC>TAC	p.H403Y	KIR3DL2_uc010esh.2_Missense_Mutation_p.H386Y|KIR3DL2_uc002qho.3_Missense_Mutation_p.H403Y			P43629	KI3L1_HUMAN	SubName: Full=KIR3DS1;	403	Cytoplasmic (Potential).				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		ACAGTTGGATCACTGCGTTTT	0.512													65	211					0	0	0.003610	0	0
SBK2	646643	broad.mit.edu	37	19	56042631	56042631	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:56042631G>A	uc010ygc.1	-	2	335	c.335C>T	c.(334-336)TCG>TTG	p.S112L		NM_001101401	NP_001094871	P0C263	SBK2_HUMAN	SH3-binding domain kinase family, member 2	112	Protein kinase.						ATP binding|protein serine/threonine kinase activity				0						CGCGCCCAGCGAGAGCCCCAC	0.667													4	17					0	0	0.000248	0	0
NLRP13	126204	broad.mit.edu	37	19	56423098	56423098	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:56423098G>A	uc010ygg.1	-	5	2110	c.2085C>T	c.(2083-2085)ATC>ATT	p.I695I		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	695							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CCCTTTCAAGGATGTGACTGC	0.383													23	80					0	0	0.006320	0	0
ZNF71	58491	broad.mit.edu	37	19	57133780	57133780	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:57133780C>T	uc002qnm.3	+	3	1363	c.1125C>T	c.(1123-1125)ATC>ATT	p.I375I		NM_021216	NP_067039	Q9NQZ8	ZNF71_HUMAN	zinc finger protein 71	375	C2H2-type 9.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(193;0.062)|Lung(386;0.0681)|LUSC - Lung squamous cell carcinoma(496;0.18)		ACCAGCGCATCCACACCGGCG	0.627													5	33					0	0	0.000602	0	0
ZNF460	10794	broad.mit.edu	37	19	57803142	57803142	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr19:57803142C>T	uc002qog.2	+	3	1555	c.1233C>T	c.(1231-1233)TTC>TTT	p.F411F	ZNF460_uc010ygv.1_Silent_p.F370F	NM_006635	NP_006626	Q14592	ZN460_HUMAN	zinc finger protein 460	411	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TTCGACACTTCAACATCCACA	0.478													18	40					0	0	0.007413	0	0
TPO	7173	broad.mit.edu	37	2	1480905	1480905	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:1480905C>T	uc002qww.2	+	8	958	c.867C>T	c.(865-867)TTC>TTT	p.F289F	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Silent_p.F289F|TPO_uc002qwr.2_Silent_p.F289F|TPO_uc002qwx.2_Silent_p.F289F|TPO_uc010yio.1_Intron|TPO_uc010yip.1_Silent_p.F289F	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	289	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GTCTGCCCTTCTACCGCTCTT	0.697													12	26					0	0	0.001368	0	0
KIDINS220	57498	broad.mit.edu	37	2	8871350	8871350	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:8871350C>T	uc002qzc.2	-	30	4998	c.4816G>A	c.(4816-4818)GAC>AAC	p.D1606N	KIDINS220_uc010yiv.1_Intron|KIDINS220_uc002qzd.2_Missense_Mutation_p.D1507N|KIDINS220_uc002qzb.2_Missense_Mutation_p.D460N	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	1606	Cytoplasmic (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					AGCTGGGAGTCATCCGCCACT	0.488													9	34					0	0	0.004482	0	0
KCNF1	3754	broad.mit.edu	37	2	11053719	11053719	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:11053719C>T	uc002rax.2	+	1	1657	c.1167C>T	c.(1165-1167)ATC>ATT	p.I389I		NM_002236	NP_002227	Q9H3M0	KCNF1_HUMAN	potassium voltage-gated channel, subfamily F,	389	Helical; Name=Segment S6; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.128)		ACGCGGCCATCAGCTTCTTGT	0.602													14	34					0	0	0.002450	0	0
NT5C1B	93034	broad.mit.edu	37	2	18766227	18766227	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:18766227C>T	uc002rcz.2	-	5	560	c.456G>A	c.(454-456)ACG>ACA	p.T152T	NT5C1B_uc002rcy.2_Silent_p.T152T|NT5C1B_uc010exr.2_Silent_p.T94T|NT5C1B_uc010yju.1_Silent_p.T92T|NT5C1B_uc002rda.2_Silent_p.T92T|NT5C1B_uc010yjv.1_Silent_p.T169T|NT5C1B_uc010yjw.1_Silent_p.T135T|NT5C1B_uc010exs.2_Silent_p.T154T|NT5C1B_uc002rdb.1_5'UTR	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	152	Ser-rich.				purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				TCCGGGAGCTCGTGGAGCTGC	0.662													4	16					0	0	0.000248	0	0
C2orf16	84226	broad.mit.edu	37	2	27801410	27801410	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:27801410G>A	uc002rkz.3	+	1	2022	c.1971G>A	c.(1969-1971)GTG>GTA	p.V657V		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	657										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					GTACTCAAGTGAAGTCTGCAG	0.393													8	42					0	0	0.000978	0	0
TTC27	55622	broad.mit.edu	37	2	32983364	32983364	+	Silent	SNP	A	G	G			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:32983364A>G	uc002rom.2	+	13	1689	c.1458A>G	c.(1456-1458)GAA>GAG	p.E486E	TTC27_uc010ymx.1_Silent_p.E436E|TTC27_uc002ron.2_RNA	NM_017735	NP_060205	Q6P3X3	TTC27_HUMAN	tetratricopeptide repeat domain 27	486	TPR 2.						protein binding			central_nervous_system(1)	1						TCTAGGCAGAAGAAATCCTTA	0.368													16	42					0	0	0.003163	0	0
LTBP1	4052	broad.mit.edu	37	2	33585818	33585818	+	Silent	SNP	A	G	G			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:33585818A>G	uc002ros.2	+	27	4158	c.4158A>G	c.(4156-4158)GAA>GAG	p.E1386E	LTBP1_uc002rot.2_Silent_p.E1060E|LTBP1_uc002rou.2_Silent_p.E1059E|LTBP1_uc002rov.2_Silent_p.E1006E|LTBP1_uc010ymz.1_Silent_p.E1017E|LTBP1_uc010yna.1_Silent_p.E964E|LTBP1_uc010ynb.1_Silent_p.E283E	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1385	TB 3.			EIFP->DL: Loss of binding to TGFB1.	negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				ATAACTGCGAAATCTTCCCCT	0.498													18	49					0	0	0.008871	0	0
NRXN1	9378	broad.mit.edu	37	2	51254859	51254859	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:51254859G>A	uc010fbq.2	-	2	2030	c.553C>T	c.(553-555)CGT>TGT	p.R185C	NRXN1_uc002rxe.3_Missense_Mutation_p.R185C|NRXN1_uc002rxd.1_Missense_Mutation_p.R185C	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CTCACGTCACGAATCCACCCC	0.706													5	9					0	0	0.000602	0	0
ALMS1	7840	broad.mit.edu	37	2	73677777	73677777	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:73677777A>G	uc002sje.1	+	10	4237	c.4126A>G	c.(4126-4128)ACT>GCT	p.T1376A	ALMS1_uc002sjf.1_Missense_Mutation_p.T1332A|ALMS1_uc002sjg.2_Missense_Mutation_p.T762A|ALMS1_uc002sjh.1_Missense_Mutation_p.T762A	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1374	18.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						TGGCACACCAACTGTAACCTC	0.443													3	92					0	0	0.000248	0	0
DCTN1	1639	broad.mit.edu	37	2	74593378	74593378	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:74593378G>A	uc002skx.2	-	23	3064	c.2753C>T	c.(2752-2754)CCC>CTC	p.P918L	SLC4A5_uc002skl.2_5'Flank|DCTN1_uc002skt.1_5'Flank|DCTN1_uc002skv.2_Missense_Mutation_p.P784L|DCTN1_uc002sku.2_Missense_Mutation_p.P784L|DCTN1_uc002skw.1_Missense_Mutation_p.P894L|DCTN1_uc010ffd.2_Missense_Mutation_p.P898L|DCTN1_uc002sky.2_Missense_Mutation_p.P881L	NM_004082	NP_004073	Q14203	DCTN1_HUMAN	dynactin 1 isoform 1	918					cell death|G2/M transition of mitotic cell cycle|mitosis|nervous system development	centrosome|cytosol|kinetochore|microtubule|spindle pole	motor activity|protein binding			ovary(3)|skin(2)	5						TACCTTGCTGGGGGGCCGCTC	0.562													29	72					0	0	0.001786	0	0
ANKRD36	375248	broad.mit.edu	37	2	97784202	97784202	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:97784202C>T	uc010yva.1	+	3	678	c.434C>T	c.(433-435)TCC>TTC	p.S145F	ANKRD36_uc002sxn.2_Missense_Mutation_p.S145F|ANKRD36_uc010yuz.1_RNA|ANKRD36_uc010fic.2_5'UTR|ANKRD36_uc002sxo.2_Missense_Mutation_p.S145F|ANKRD36_uc002sxp.3_RNA	NM_001164315	NP_001157787	A6QL64	AN36A_HUMAN	ankyrin repeat domain 36	145	ANK 4.										0						GAAGATACATCCATGATAGAA	0.368													20	36					0	0	0.004656	0	0
EDAR	10913	broad.mit.edu	37	2	109513597	109513597	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:109513597C>T	uc002teq.3	-	12	1544	c.1113G>A	c.(1111-1113)GTG>GTA	p.V371V	EDAR_uc010fjn.2_Silent_p.V403V|EDAR_uc010yws.1_Silent_p.V403V	NM_022336	NP_071731	Q9UNE0	EDAR_HUMAN	ectodysplasin A receptor precursor	371	Death.|Cytoplasmic (Potential).				apoptosis|cell differentiation	integral to membrane	protein binding|transmembrane receptor activity			skin(1)	1						GCCACGTTTTCACAACAGCCT	0.567													26	50					0	0	0.001786	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125521271	125521271	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:125521271T>C	uc002tno.2	+	15	2618	c.2254T>C	c.(2254-2256)TCC>CCC	p.S752P	CNTNAP5_uc010flu.2_Missense_Mutation_p.S753P	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	752	Extracellular (Potential).|Fibrinogen C-terminal.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		TGGCTTTCTTTCCTTCAAAGA	0.413													4	23					0	0	0.001168	0	0
LRP1B	53353	broad.mit.edu	37	2	141079558	141079558	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:141079558C>T	uc002tvj.1	-	82	13586	c.12614G>A	c.(12613-12615)GGC>GAC	p.G4205D		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4205	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ATTGCAGGTGCCATTAATCAA	0.378										TSP Lung(27;0.18)			23	78					0	0	0.003954	0	0
KYNU	8942	broad.mit.edu	37	2	143643031	143643031	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:143643031A>C	uc002tvl.2	+	2	225	c.95A>C	c.(94-96)CAC>CCC	p.H32P	KYNU_uc002tvk.2_Missense_Mutation_p.H32P|KYNU_uc010fnm.2_Missense_Mutation_p.H32P	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a	32					anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.072)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	GTGGCTCTCCACCTAGATGAG	0.498													12	37					0	0	0.000978	0	0
PABPC1P2	728773	broad.mit.edu	37	2	147346002	147346002	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:147346002G>A	uc002twf.3	+	1	1378	c.462G>A	c.(460-462)AGG>AGA	p.R154R		NR_026904				RecName: Full=Putative protein PABPC1-like; AltName: Full=Polyadenylate-binding protein pseudogene 2;												0						GCAGCAAAAGGTTTGGCTTTG	0.403													7	22					0	0	0.003080	0	0
MBD5	55777	broad.mit.edu	37	2	149240855	149240855	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:149240855C>T	uc002twm.3	+	10	3683	c.2695C>T	c.(2695-2697)CAT>TAT	p.H899Y	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.H899Y|MBD5_uc002two.2_5'Flank|MBD5_uc002twp.2_5'Flank	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	899						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		GCACGCACTTCATTTTCCATC	0.498													44	159					0	0	0.002222	0	0
BAZ2B	29994	broad.mit.edu	37	2	160284896	160284896	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:160284896C>T	uc002uao.2	-	12	2642	c.2290G>A	c.(2290-2292)GGG>AGG	p.G764R	BAZ2B_uc002uap.2_Missense_Mutation_p.G762R|BAZ2B_uc002uaq.1_Missense_Mutation_p.G594R|BAZ2B_uc002uar.1_Missense_Mutation_p.G337R	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	764	MBD.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						TGAAGGCGCCCTCCAAAGTTT	0.343													19	111					0	0	0.001882	0	0
SCN7A	6332	broad.mit.edu	37	2	167322306	167322306	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:167322306G>A	uc002udu.1	-	7	983	c.856C>T	c.(856-858)CCA>TCA	p.P286S	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	286					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						ATATAATATGGGTTTCCAGTT	0.393													47	63					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179583311	179583311	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:179583311C>T	uc010zfg.1	-	82	21014	c.20790G>A	c.(20788-20790)GTG>GTA	p.V6930V	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.V3591V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7857							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCAATCTTTTCACAAAGGTGG	0.418													15	39					0	0	0.004007	0	0
TTN	7273	broad.mit.edu	37	2	179611999	179611999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:179611999G>A	uc002unb.2	-	46	15352	c.15128C>T	c.(15127-15129)TCC>TTC	p.S5043F	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCACCTTCGGAAGGTGTTGA	0.458													28	41					0	0	0.005443	0	0
SSFA2	6744	broad.mit.edu	37	2	182787025	182787025	+	Silent	SNP	T	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:182787025T>A	uc002uoi.2	+	16	3883	c.3561T>A	c.(3559-3561)GTT>GTA	p.V1187V	SSFA2_uc002uoh.2_Silent_p.V1187V|SSFA2_uc002uoj.2_Silent_p.V1165V|SSFA2_uc002uok.2_RNA|SSFA2_uc010zfo.1_Silent_p.V1012V|SSFA2_uc002uol.2_Silent_p.V1034V|SSFA2_uc002uom.2_Silent_p.V651V	NM_001130445	NP_001123917	P28290	SSFA2_HUMAN	sperm specific antigen 2 isoform 1	1187						cytoplasm|plasma membrane	actin binding			breast(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0856)			CCCCAGAAGTTGTAGGACCTA	0.483													22	72					0	0	0.002299	0	0
PPP1R1C	151242	broad.mit.edu	37	2	182852601	182852601	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:182852601G>A	uc002uoo.2	+	2	404	c.117G>A	c.(115-117)GTG>GTA	p.V39V	PPP1R1C_uc002uon.2_Intron|PPP1R1C_uc002uop.1_Silent_p.V39V|PPP1R1C_uc010frm.1_Silent_p.V46V|PPP1R1C_uc010frn.1_RNA	NM_001080545	NP_001074014	Q8WVI7	PPR1C_HUMAN	protein phosphatase 1, regulatory (inhibitor)	39					signal transduction	cytoplasm	protein phosphatase inhibitor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.0628)			CATCACTTGTGATTCTCAATG	0.418													40	131					0	0	0.003214	0	0
HECW2	57520	broad.mit.edu	37	2	197086970	197086970	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:197086970G>A	uc002utm.1	-	24	4294	c.4111C>T	c.(4111-4113)CTC>TTC	p.L1371F	HECW2_uc002utl.1_Missense_Mutation_p.L1015F	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	1371	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						GTGAACGTGAGGTCTAGGATG	0.448													16	55					0	0	0.004007	0	0
PIKFYVE	200576	broad.mit.edu	37	2	209190437	209190438	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:209190437_209190438CC>TT	uc002vcz.2	+	20	3060_3061	c.2902_2903CC>TT	c.(2902-2904)CCT>TTT	p.P968F	PIKFYVE_uc010fun.1_Missense_Mutation_p.P649F|PIKFYVE_uc002vcy.1_Missense_Mutation_p.P912F	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	968					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						GGCGGGTCTCCCTTGTGCTTTC	0.505													28	51					0	0	0.004672	0	0
MYL1	4632	broad.mit.edu	37	2	211159076	211159076	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:211159076T>C	uc002vec.2	-	4	500	c.371A>G	c.(370-372)AAG>AGG	p.K124R	MYL1_uc002veb.2_Missense_Mutation_p.K80R	NM_079420	NP_524144	P05976	MYL1_HUMAN	fast skeletal myosin alkali light chain 1	124					muscle filament sliding|muscle organ development	cytosol|muscle myosin complex|sarcomere	calcium ion binding|structural constituent of muscle			ovary(1)	1				Epithelial(149;0.00573)|Lung(261;0.0422)|LUSC - Lung squamous cell carcinoma(261;0.0444)|all cancers(144;0.057)		GGCCTGGTCCTTGTTGTTGGA	0.448													15	49					0	0	0.003163	0	0
SP100	6672	broad.mit.edu	37	2	231307783	231307783	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:231307783A>T	uc002vqt.2	+	3	380	c.239A>T	c.(238-240)GAT>GTT	p.D80V	SP100_uc002vqs.2_Missense_Mutation_p.D80V|SP100_uc002vqu.1_Missense_Mutation_p.D80V|SP100_uc010zmb.1_Missense_Mutation_p.D80V|SP100_uc002vqq.1_Missense_Mutation_p.D80V|SP100_uc002vqr.1_Missense_Mutation_p.D55V|SP100_uc010zmc.1_Missense_Mutation_p.D55V|SP100_uc002vqv.1_Missense_Mutation_p.D44V	NM_003113	NP_003104	P23497	SP100_HUMAN	nuclear antigen Sp100 isoform 2	80	HSR.				DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|interspecies interaction between organisms|negative regulation of cellular component movement|negative regulation of DNA binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of transcription, DNA-dependent|negative regulation of viral transcription|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|response to cytokine stimulus|response to retinoic acid|response to type I interferon	cytoplasm|nuclear periphery|nucleolus|PML body	chromo shadow domain binding|DNA binding|identical protein binding|kinase binding|protein homodimerization activity|transcription coactivator activity|transcription corepressor activity|transcription factor binding			ovary(4)|central_nervous_system(1)	5		Renal(207;0.0112)|all_lung(227;0.0335)|all_hematologic(139;0.0749)|Lung NSC(271;0.142)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		GGCCTCCGTGATCGTGATCTC	0.358													6	110					0	0	0.003080	0	0
ARMC9	80210	broad.mit.edu	37	2	232079550	232079550	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:232079550C>T	uc002vrq.3	+	4	296	c.184C>T	c.(184-186)CTT>TTT	p.L62F	ARMC9_uc002vrp.3_Missense_Mutation_p.L62F	NM_025139	NP_079415	Q7Z3E5	ARMC9_HUMAN	armadillo repeat containing 9	62							binding			ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0744)|all_hematologic(139;0.0749)|Acute lymphoblastic leukemia(138;0.167)|Medulloblastoma(418;0.184)|Lung NSC(271;0.205)		Epithelial(121;1.43e-10)|LUSC - Lung squamous cell carcinoma(224;0.017)|Lung(119;0.0189)		ACAGAAGGATCTTGTCGCTGC	0.468													17	64					0	0	0.006122	0	0
TMC2	117532	broad.mit.edu	37	20	2582822	2582822	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr20:2582822C>T	uc002wgf.1	+	11	1303	c.1288C>T	c.(1288-1290)CGT>TGT	p.R430C	TMC2_uc002wgg.1_Missense_Mutation_p.R414C|TMC2_uc010zpw.1_Missense_Mutation_p.R262C|TMC2_uc010zpx.1_Missense_Mutation_p.R261C	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	430	Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						AAGATTTCTTCGTGTCCTGGC	0.388													17	57					0	0	0.004990	0	0
ANKRD5	63926	broad.mit.edu	37	20	10030179	10030179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr20:10030179C>T	uc002wno.2	+	7	1355	c.962C>T	c.(961-963)CCA>CTA	p.P321L	uc002wnn.1_Intron|ANKRD5_uc002wnp.2_Missense_Mutation_p.P321L|ANKRD5_uc010gbz.2_Missense_Mutation_p.P132L	NM_022096	NP_071379	Q9NU02	ANKR5_HUMAN	ankyrin repeat domain protein 5	321							calcium ion binding			ovary(1)|breast(1)	2						GCCAAAAATCCAAATCCACTG	0.527													37	58					0	0	0.003271	0	0
FRG1B	284802	broad.mit.edu	37	20	29628245	29628245	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr20:29628245G>A	uc010ztl.1	+	3	189	c.157G>A	c.(157-159)GCC>ACC	p.A53T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.A5T					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGCTTTGTTGGCCTCAAATAG	0.353													4	66					0	0	0.000602	0	0
DEFB118	117285	broad.mit.edu	37	20	29960927	29960927	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr20:29960927G>A	uc002wvr.2	+	2	352	c.326G>A	c.(325-327)GGA>GAA	p.G109E		NM_054112	NP_473453	Q96PH6	DB118_HUMAN	beta-defensin 118 precursor	109					cell-matrix adhesion|defense response to bacterium|innate immune response|spermatogenesis	extracellular region				ovary(3)|pancreas(1)	4	all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			TCTGAGGCGGGAAGGGGAACT	0.433													24	49					0	0	0.004656	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870436	51870436	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr20:51870436C>T	uc002xwo.2	+	2	1395	c.439C>T	c.(439-441)CTG>TTG	p.L147L		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	147					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			TGGCTTCAAGCTGTCCAATAG	0.512													26	66					0	0	0.005443	0	0
MC3R	4159	broad.mit.edu	37	20	54824811	54824811	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr20:54824811G>A	uc002xxb.2	+	1	1024	c.912G>A	c.(910-912)CTG>CTA	p.L304L		NM_019888	NP_063941	P41968	MC3R_HUMAN	melanocortin 3 receptor	341	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|protein binding			ovary(2)|breast(2)	4			Colorectal(105;0.202)			TCCGGAGCCTGGAATTGCGCA	0.527													93	117					0	0	0.003610	0	0
ZNF831	128611	broad.mit.edu	37	20	57766725	57766725	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr20:57766725G>A	uc002yan.2	+	1	651	c.651G>A	c.(649-651)GGG>GGA	p.G217G		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	217						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					TGGAGGAAGGGGACAAGGCCG	0.687													21	55					0	0	0.001882	0	0
KCNQ2	3785	broad.mit.edu	37	20	62071036	62071036	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr20:62071036C>T	uc002yey.1	-	6	1019	c.842G>A	c.(841-843)GGG>GAG	p.G281E	KCNQ2_uc002yez.1_Missense_Mutation_p.G281E|KCNQ2_uc002yfa.1_Missense_Mutation_p.G281E|KCNQ2_uc002yfb.1_Missense_Mutation_p.G281E|KCNQ2_uc011aax.1_Missense_Mutation_p.G281E|KCNQ2_uc002yfc.1_Missense_Mutation_p.G281E	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	potassium voltage-gated channel KQT-like protein	281	Selectivity filter (By similarity).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	GTACTTGTCCCCGTAGCCAAT	0.642													22	65					0	0	0.003954	0	0
DSCAM	1826	broad.mit.edu	37	21	41496239	41496239	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr21:41496239C>T	uc002yyq.1	-	20	4031	c.3579G>A	c.(3577-3579)GCG>GCA	p.A1193A	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1193	Fibronectin type-III 4.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CCTTCACACCCGCGGGAGGAC	0.597													18	31					0	0	0.007413	0	0
BID	637	broad.mit.edu	37	22	18220990	18220990	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr22:18220990C>T	uc002znd.1	-	5	539	c.369G>A	c.(367-369)CGG>CGA	p.R123R	BID_uc002znc.1_Silent_p.R169R|BID_uc002zne.1_Silent_p.R27R|BID_uc010gra.1_RNA|BID_uc002znf.1_Silent_p.R27R|BID_uc010grb.1_Silent_p.R123R|BID_uc010grc.1_Silent_p.R27R	NM_001196	NP_001187	P55957	BID_HUMAN	BH3 interacting domain death agonist isoform 2	123					activation of pro-apoptotic gene products|establishment of protein localization in membrane|induction of apoptosis by intracellular signals|induction of apoptosis via death domain receptors|neuron apoptosis|positive regulation of protein homooligomerization|positive regulation of release of cytochrome c from mitochondria|release of cytochrome c from mitochondria	cytosol|membrane fraction|mitochondrial outer membrane	death receptor binding				0		all_epithelial(15;0.198)		Lung(27;0.0419)		GGTCCCTGTTCCGGTCCTGCA	0.552													13	19					0	0	0.001855	0	0
LOC96610	96610	broad.mit.edu	37	22	22385701	22385701	+	RNA	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr22:22385701C>T	uc011aim.1	+	2		c.181C>T			uc002zvu.2_Intron					Parts of antibodies, mostly variable regions.												0						AGAGAAGGGCCCTCGGTACTT	0.617													15	32					0	0	0.004007	0	0
LOC96610	96610	broad.mit.edu	37	22	22664115	22664115	+	RNA	SNP	A	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr22:22664115A>T	uc011aim.1	+	30		c.1972A>T			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						TGTTTAATTCAGCCTTGGAAG	0.413													4	37					0	0	0.004482	0	0
ZNRF3	84133	broad.mit.edu	37	22	29445936	29445936	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr22:29445936C>T	uc003aeg.2	+	8	1632	c.1467C>T	c.(1465-1467)TCC>TCT	p.S489S	ZNRF3_uc003aeh.1_Silent_p.S489S	NM_032173	NP_115549	Q9ULT6	ZNRF3_HUMAN	zinc and ring finger 3	589	Cytoplasmic (Potential).					integral to membrane	zinc ion binding			ovary(1)	1						TCCGCAGCTCCCTCAGCAGCG	0.662													27	58					0	0	0.002096	0	0
SEC14L3	266629	broad.mit.edu	37	22	30866041	30866041	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr22:30866041C>T	uc003ahy.2	-	4	288	c.199G>A	c.(199-201)GAT>AAT	p.D67N	SEC14L3_uc003ahz.2_5'UTR|SEC14L3_uc003aia.2_Missense_Mutation_p.D8N|SEC14L3_uc003aib.2_Missense_Mutation_p.D8N	NM_174975	NP_777635	Q9UDX4	S14L3_HUMAN	SEC14-like 3	67						integral to membrane|intracellular	lipid binding|transporter activity			ovary(3)|pancreas(1)|skin(1)	5					Vitamin E(DB00163)	TGGTCAATATCCATGGTCTTC	0.547													35	85					0	0	0.005524	0	0
PLA2G3	50487	broad.mit.edu	37	22	31536233	31536233	+	Silent	SNP	G	A	A	rs2232175	byFrequency	TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr22:31536233G>A	uc003aka.2	-	1	237	c.108C>T	c.(106-108)GCC>GCT	p.A36A		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	36					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						TGCCAGGGACGGCCTTGGTCA	0.662													26	35					0	0	0.003954	0	0
EP300	2033	broad.mit.edu	37	22	41537070	41537070	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr22:41537070C>T	uc003azl.3	+	10	2292	c.1897C>T	c.(1897-1899)CTA>TTA	p.L633L		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	633	KIX.				apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						CTACCACCTTCTAGCTGAGAA	0.388			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				27	28					0	0	0.004656	0	0
MPPED1	758	broad.mit.edu	37	22	43831060	43831060	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr22:43831060G>A	uc011apv.1	+	3	554	c.331G>A	c.(331-333)GAC>AAC	p.D111N	MPPED1_uc011apw.1_Missense_Mutation_p.D5N|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Missense_Mutation_p.D111N|MPPED1_uc011apz.1_Missense_Mutation_p.D144N	NM_001044370	NP_001037835	O15442	MPPD1_HUMAN	metallophosphoesterase domain containing 1	111							hydrolase activity				0		all_neural(38;0.0244)|Ovarian(80;0.0694)				GCCGTACGGCGACGTGCTGAT	0.657													47	39					0	0	0.003610	0	0
ITPR1	3708	broad.mit.edu	37	3	4859857	4859857	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:4859857C>T	uc003bqa.2	+	57	8163	c.7815C>T	c.(7813-7815)ATC>ATT	p.I2605I	ITPR1_uc010hca.1_Silent_p.I2590I|ITPR1_uc011asu.1_Silent_p.I616I|ITPR1_uc003bqc.2_Silent_p.I1575I|ITPR1_uc010hcc.1_Silent_p.I373I|ITPR1_uc011asv.1_Silent_p.I329I	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	2653	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		TGTGCTTCATCGTCCTGGTGA	0.468													10	27					0	0	0.008291	0	0
HRH1	3269	broad.mit.edu	37	3	11301941	11301941	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:11301941C>T	uc010hdr.2	+	2	1560	c.1218C>T	c.(1216-1218)CAC>CAT	p.H406H	HRH1_uc010hds.2_Silent_p.H406H|HRH1_uc010hdt.2_Silent_p.H406H|HRH1_uc003bwb.3_Silent_p.H406H	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	406	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	CTGGGTTGCACATGAACCGCG	0.478													33	74					0	0	0.002445	0	0
FGD5	152273	broad.mit.edu	37	3	14905767	14905767	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:14905767G>A	uc003bzc.2	+	2	2768	c.2658G>A	c.(2656-2658)AAG>AAA	p.K886K	FGD5_uc011avk.1_Silent_p.K886K	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	886					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						TCACCCACAAGGTAGGGCACC	0.597													19	53					0	0	0.008871	0	0
GLB1	2720	broad.mit.edu	37	3	33038624	33038624	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:33038624G>A	uc003cfi.1	-	16	2064	c.1947C>T	c.(1945-1947)ACC>ACT	p.T649T	GLB1_uc003cfh.1_Silent_p.T619T|GLB1_uc003cfj.1_Silent_p.T518T|GLB1_uc011axk.1_Silent_p.T697T	NM_000404	NP_000395	P16278	BGAL_HUMAN	galactosidase, beta 1 isoform a preproprotein	649					carbohydrate metabolic process	lysosome|perinuclear region of cytoplasm	beta-galactosidase activity|cation binding|protein binding			large_intestine(1)	1		Melanoma(143;0.104)				GATGATCGTAGGTCACAGATG	0.507													25	73					0	0	0.003330	0	0
TRANK1	9881	broad.mit.edu	37	3	36872818	36872818	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:36872818C>T	uc003cgj.2	-	12	6776	c.6474G>A	c.(6472-6474)AGG>AGA	p.R2158R		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2708					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CCCTGGGCTCCCTGGCCTCCT	0.577													3	16					0	0	0.004672	0	0
TGM4	7047	broad.mit.edu	37	3	44926977	44926977	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:44926977G>A	uc003coc.3	+	2	253	c.180G>A	c.(178-180)CTG>CTA	p.L60L	TGM4_uc003coa.2_Silent_p.L60L|TGM4_uc003cob.2_RNA	NM_003241	NP_003232	P49221	TGM4_HUMAN	transglutaminase 4 (prostate)	60					peptide cross-linking|protein polyamination		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00963)|KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0686)	L-Glutamine(DB00130)	AACTGAAACTGGAATTCAGCA	0.398													7	24					0	0	0.003080	0	0
LTF	4057	broad.mit.edu	37	3	46490375	46490375	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:46490375C>T	uc003cpq.2	-	9	1229	c.1191G>A	c.(1189-1191)GAG>GAA	p.E397E	LTF_uc003fzr.2_Silent_p.E353E|LTF_uc010hjh.2_Silent_p.E397E|LTF_uc003cpr.2_Silent_p.E384E	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	397	Transferrin-like 2.				cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	CGATGCAGTCCTCTGTGGTGG	0.642													15	39					0	0	0.006122	0	0
ALS2CL	259173	broad.mit.edu	37	3	46723548	46723548	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:46723548C>T	uc003cqa.1	-	11	1336	c.1146G>A	c.(1144-1146)GTG>GTA	p.V382V	ALS2CL_uc003cpz.1_5'Flank|ALS2CL_uc003cqb.1_Silent_p.V382V|ALS2CL_uc003cqc.1_RNA	NM_147129	NP_667340	Q60I27	AL2CL_HUMAN	ALS2 C-terminal like isoform 1	382	MORN 2.				endosome organization|regulation of Rho protein signal transduction		GTPase activator activity|identical protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)|central_nervous_system(2)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000726)|KIRC - Kidney renal clear cell carcinoma(197;0.0171)|Kidney(197;0.0202)		AGAAATTCCCCACGTGATTCC	0.627													7	21					0	0	0.001984	0	0
CDHR4	389118	broad.mit.edu	37	3	49836714	49836714	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:49836714C>T	uc010hkz.2	-	2	215	c.206G>A	c.(205-207)AGC>AAC	p.S69N	CDHR4_uc003cxp.2_Missense_Mutation_p.S69N|CDHR4_uc011bcw.1_Missense_Mutation_p.S69N	NM_001007540	NP_001007541	A6H8M9	CDHR4_HUMAN	cadherin-like 29 precursor	69	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						CCTGGCCAAGCTGGGTGGGTT	0.567													9	18					0	0	0.008291	0	0
DOCK3	1795	broad.mit.edu	37	3	51274943	51274943	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:51274943G>A	uc011bds.1	+	21	2047	c.2024G>A	c.(2023-2025)CGA>CAA	p.R675Q		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	675						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		AACCTGCTCCGAGACATCAAG	0.473													9	15					0	0	0.006214	0	0
STAB1	23166	broad.mit.edu	37	3	52539712	52539712	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:52539712G>A	uc003dej.2	+	15	1684	c.1610G>A	c.(1609-1611)GGA>GAA	p.G537E	STAB1_uc003dei.1_Missense_Mutation_p.G537E	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	537	Extracellular (Potential).|FAS1 2.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		ATCCTGGACGGACCTGGGCCC	0.637													15	26					0	0	0.004990	0	0
ITIH4	3700	broad.mit.edu	37	3	52853460	52853460	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:52853460G>A	uc003dfz.2	-	17	2062	c.2026C>T	c.(2026-2028)CCT>TCT	p.P676S	ITIH4_uc011bel.1_Missense_Mutation_p.P376S|ITIH4_uc003dfy.2_Missense_Mutation_p.P510S|ITIH4_uc011bem.1_Missense_Mutation_p.P681S|ITIH4_uc011ben.1_Missense_Mutation_p.P646S	NM_002218	NP_002209	Q14624	ITIH4_HUMAN	inter-alpha (globulin) inhibitor H4	676					acute-phase response|hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		GGAACATCAGGAGGTCCTGGG	0.602													18	51					0	0	0.007413	0	0
TKT	7086	broad.mit.edu	37	3	53265528	53265528	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:53265528G>A	uc003dgo.2	-	7	897	c.787C>T	c.(787-789)CCC>TCC	p.P263S	TKT_uc003dgp.2_5'Flank|TKT_uc011beo.1_Missense_Mutation_p.P216S|TKT_uc003dgq.2_Missense_Mutation_p.P263S|TKT_uc011beq.1_Missense_Mutation_p.P271S|TKT_uc011ber.1_Missense_Mutation_p.P65S|TKT_uc011bep.1_Missense_Mutation_p.P180S	NM_001135055	NP_001128527	P29401	TKT_HUMAN	transketolase isoform 1	263					energy reserve metabolic process|xylulose biosynthetic process	cytosol	protein binding|transketolase activity			ovary(2)	2		Prostate(884;0.0959)		BRCA - Breast invasive adenocarcinoma(193;0.000159)|OV - Ovarian serous cystadenocarcinoma(275;0.000314)|Kidney(197;0.00178)|KIRC - Kidney renal clear cell carcinoma(197;0.00201)	Thiamine(DB00152)	ATGTTTTTGGGGAGGGGCTTC	0.557													16	33					0	0	0.008871	0	0
CACNA1D	776	broad.mit.edu	37	3	53779704	53779704	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:53779704C>T	uc003dgv.3	+	24	3223	c.3060C>T	c.(3058-3060)ATC>ATT	p.I1020I	CACNA1D_uc003dgu.3_Silent_p.I1040I|CACNA1D_uc003dgy.3_Silent_p.I1020I|CACNA1D_uc003dgw.3_Silent_p.I687I|CACNA1D_uc003dgx.1_Silent_p.I168I	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	1020	Helical; Name=S5 of repeat III; (Potential).|III.				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	ACATCATGATCGTCACCACCC	0.532													20	60					0	0	0.004656	0	0
LRTM1	57408	broad.mit.edu	37	3	54959082	54959082	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:54959082A>T	uc003dhl.2	-	2	302	c.168T>A	c.(166-168)CAT>CAA	p.H56Q	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	56	LRR 1.|Extracellular (Potential).					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		TATCTTGTAAATGCAGCGTTC	0.443													12	34					0	0	0.000978	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64608226	64608226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:64608226C>T	uc003dmg.2	-	17	2458	c.2426G>A	c.(2425-2427)GGA>GAA	p.G809E	ADAMTS9_uc011bfo.1_Missense_Mutation_p.G781E|ADAMTS9_uc003dmh.1_Missense_Mutation_p.G638E|ADAMTS9_uc003dmk.1_Missense_Mutation_p.G809E	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	809	Spacer.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		AACAAAGTTTCCATTTAGCAA	0.393													101	351					0	0	0.003610	0	0
RETNLB	84666	broad.mit.edu	37	3	108475928	108475928	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:108475928G>A	uc003dxh.2	-	1	203	c.105C>T	c.(103-105)ATC>ATT	p.I35I		NM_032579	NP_115968	Q9BQ08	RETNB_HUMAN	resistin like beta precursor	35					cell proliferation	extracellular region	hormone activity			skin(1)	1						GAACATCCTTGATCTTCTTAT	0.502													11	16					0	0	0.000978	0	0
POLQ	10721	broad.mit.edu	37	3	121207238	121207238	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:121207238G>A	uc003eee.3	-	16	4669	c.4540C>T	c.(4540-4542)CCT>TCT	p.P1514S	POLQ_uc003eed.2_Missense_Mutation_p.P686S	NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	1514					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		ACTTCTGAAGGAAGGGGTTCT	0.323								DNA_polymerases_(catalytic_subunits)					21	47					0	0	0.008871	0	0
HSPBAP1	79663	broad.mit.edu	37	3	122459884	122459884	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:122459884G>T	uc003efu.1	-	7	1025	c.902C>A	c.(901-903)CCA>CAA	p.P301Q	HSPBAP1_uc003eft.1_Missense_Mutation_p.P12Q	NM_024610	NP_078886	Q96EW2	HBAP1_HUMAN	Hspb associated protein 1	301						cytoplasm				ovary(1)|lung(1)	2				GBM - Glioblastoma multiforme(114;0.0531)		GGTATTTTGTGGATTCTCTGC	0.478													23	73					9.86323e-18	3.2032e-17	0.003954	1	0
CCDC37	348807	broad.mit.edu	37	3	126142215	126142215	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:126142215G>A	uc003eiu.1	+	12	1229	c.1130G>A	c.(1129-1131)GGG>GAG	p.G377E	CCDC37_uc010hsg.1_Missense_Mutation_p.G378E	NM_182628	NP_872434	Q494V2	CCD37_HUMAN	coiled-coil domain containing 37	377										ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.166)		GACAGCGATGGGGAGGTGAAT	0.657													7	22					0	0	0.006214	0	0
COL6A6	131873	broad.mit.edu	37	3	130380960	130380960	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:130380960G>A	uc010htl.2	+	34	6341	c.6310G>A	c.(6310-6312)GAA>AAA	p.E2104K	COL6A6_uc003eni.3_Missense_Mutation_p.E203K	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	2104	VWFA 9.|Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						CTTAAAGAAGGAATCCTTGCG	0.433													10	50					0	0	0.008291	0	0
ACPP	55	broad.mit.edu	37	3	132071612	132071612	+	Missense_Mutation	SNP	G	A	A	rs140885758		TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:132071612G>A	uc010htp.2	+	9	1003	c.913G>A	c.(913-915)GGA>AGA	p.G305R	ACPP_uc003eon.3_Missense_Mutation_p.G272R|ACPP_uc003eop.3_Missense_Mutation_p.G305R	NM_001099	NP_001090	P15309	PPAP_HUMAN	acid phosphatase, prostate short isoform	305						extracellular region|lysosomal membrane	5'-nucleotidase activity|acid phosphatase activity			ovary(1)	1						TGTTTACAACGGACTCCTTCC	0.433													4	59					0	0	0.000602	0	0
TRIM42	287015	broad.mit.edu	37	3	140407233	140407233	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:140407233G>A	uc003eto.1	+	3	1900	c.1709G>A	c.(1708-1710)GGC>GAC	p.G570D		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	570						intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						CCCACAGACGGCCTCTACACC	0.572													19	56					0	0	0.008871	0	0
GRK7	131890	broad.mit.edu	37	3	141497384	141497384	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:141497384C>T	uc011bnd.1	+	1	342	c.258C>T	c.(256-258)TTC>TTT	p.F86F		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	86	RGS.				visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						CGGCAACCTTCCTAGAGGACG	0.662													6	37					0	0	0.001984	0	0
P2RY14	9934	broad.mit.edu	37	3	150931748	150931748	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:150931748T>A	uc003eyr.1	-	3	835	c.357A>T	c.(355-357)AGA>AGT	p.R119S	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron|P2RY14_uc003eys.1_Missense_Mutation_p.R119S	NM_001081455	NP_001074924	Q15391	P2Y14_HUMAN	P2Y14 receptor	119	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled|UDP-activated nucleotide receptor activity			large_intestine(2)|ovary(1)|lung(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TTTTATAATATCTGTCAAAGC	0.453													16	34					0	0	0.003163	0	0
PLCH1	23007	broad.mit.edu	37	3	155203145	155203145	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:155203145C>T	uc011bok.1	-	22	3275	c.2998G>A	c.(2998-3000)GCA>ACA	p.A1000T	PLCH1_uc011boj.1_Missense_Mutation_p.V1000I|PLCH1_uc011bol.1_Missense_Mutation_p.A962T	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1000					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			AGCATCTTACCTAGAGAGTTT	0.423													7	30					0	0	0.001984	0	0
ABCC5	10057	broad.mit.edu	37	3	183669325	183669325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:183669325C>T	uc003fmg.2	-	20	3013	c.2848G>A	c.(2848-2850)GAG>AAG	p.E950K	ABCC5_uc011bqt.1_Missense_Mutation_p.E478K|ABCC5_uc010hxl.2_Missense_Mutation_p.E950K	NM_005688	NP_005679	O15440	MRP5_HUMAN	ATP-binding cassette, sub-family C, member 5	950	ABC transmembrane type-1 2.					integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	all_cancers(143;1.85e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			CGGAAAAGCTCGTCATGCAGC	0.557													25	58					0	0	0.007291	0	0
CLCN2	1181	broad.mit.edu	37	3	184075585	184075585	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:184075585G>A	uc003foi.2	-	6	799	c.675C>T	c.(673-675)CTC>CTT	p.L225L	CLCN2_uc003foh.2_5'Flank|CLCN2_uc010hya.1_Silent_p.L225L|CLCN2_uc011brl.1_Silent_p.L225L|CLCN2_uc011brm.1_Silent_p.L181L|CLCN2_uc011brn.1_Silent_p.L225L	NM_004366	NP_004357	P51788	CLCN2_HUMAN	chloride channel 2	225						chloride channel complex	voltage-gated chloride channel activity				0	all_cancers(143;6.66e-11)|Ovarian(172;0.0339)		Epithelial(37;2.22e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Lubiprostone(DB01046)	TACCCCCAAAGAGGGAGAGGA	0.637													12	30					0	0	0.002450	0	0
RTP1	132112	broad.mit.edu	37	3	186917640	186917640	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:186917640G>A	uc003frg.2	+	2	604	c.574G>A	c.(574-576)GAG>AAG	p.E192K		NM_153708	NP_714919	P59025	RTP1_HUMAN	receptor transporting protein 1	192	Cytoplasmic (Potential).				protein insertion into membrane	cell surface|integral to membrane|plasma membrane	olfactory receptor binding			ovary(2)|breast(1)	3	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.56e-18)	GBM - Glioblastoma multiforme(93;0.0269)		AGAGTTCTGCGAGGCCTGCCA	0.701													15	30					0	0	0.003163	0	0
CPN2	1370	broad.mit.edu	37	3	194063009	194063009	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr3:194063009G>A	uc003fts.2	-	2	513	c.423C>T	c.(421-423)TTC>TTT	p.F141F		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	141	LRR 2.				protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		CCAGGTGCTGGAAAAGACCCT	0.602													12	31					0	0	0.000978	0	0
EVC2	132884	broad.mit.edu	37	4	5624385	5624386	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr4:5624385_5624386CC>TT	uc003gij.2	-	14	2433_2434	c.2379_2380GG>AA	c.(2377-2382)GGGGAG>GGAAAG	p.E794K	EVC2_uc011bwb.1_Missense_Mutation_p.E234K|EVC2_uc003gik.2_Missense_Mutation_p.E714K	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	794	Potential.					integral to membrane				large_intestine(3)|ovary(2)	5						TCCCTCTCCTCCCCCTCCAGCT	0.663													10	21					0	0	0.004672	0	0
GBA3	57733	broad.mit.edu	37	4	22749261	22749261	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr4:22749261C>T	uc003gqp.3	+	3	720	c.629C>T	c.(628-630)TCC>TTC	p.S210F	GBA3_uc010iep.2_Intron|GBA3_uc011bxo.1_Missense_Mutation_p.S211F	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	210					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						AGCTATGATTCCTTATTTCGA	0.473													37	109					0	0	0.003271	0	0
FAM114A1	92689	broad.mit.edu	37	4	38933073	38933073	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr4:38933073C>T	uc003gtn.2	+	11	1339	c.1163C>T	c.(1162-1164)GCC>GTC	p.A388V	FAM114A1_uc011byh.1_Missense_Mutation_p.A181V|FAM114A1_uc010ifi.2_Missense_Mutation_p.A46V	NM_138389	NP_612398	Q8IWE2	NXP20_HUMAN	hypothetical protein LOC92689	388						cytoplasm				ovary(1)	1						CCTCTGCAGGCCATGAAGAGG	0.453													14	35					0	0	0.003163	0	0
STAP1	26228	broad.mit.edu	37	4	68459033	68459033	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr4:68459033G>A	uc003hde.3	+	8	867	c.785G>A	c.(784-786)GGA>GAA	p.G262E	STAP1_uc003hdf.2_Missense_Mutation_p.G262E	NM_012108	NP_036240	Q9ULZ2	STAP1_HUMAN	signal transducing adaptor family member 1	262	SH2.				cellular membrane fusion|intracellular protein transport	cytoplasm					0						GAGACTCGAGGAAATTTAAGA	0.323													14	78					0	0	0.004990	0	0
ART3	419	broad.mit.edu	37	4	77003601	77003601	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr4:77003601C>T	uc003hjo.2	+	3	813	c.694C>T	c.(694-696)CAA>TAA	p.Q232*	ART3_uc003hji.2_Nonsense_Mutation_p.Q232*|ART3_uc003hjj.2_Nonsense_Mutation_p.Q232*|ART3_uc003hjk.2_Nonsense_Mutation_p.Q232*|ART3_uc010ija.1_Nonsense_Mutation_p.Q232*|ART3_uc003hjn.2_Nonsense_Mutation_p.Q232*|ART3_uc003hjp.2_Intron|ART3_uc010ijb.2_Intron|ART3_uc003hjq.2_Intron|ART3_uc003hjr.2_Nonsense_Mutation_p.Q202*|ART3_uc010ijc.2_Nonsense_Mutation_p.Q202*|ART3_uc010ijd.2_Nonsense_Mutation_p.Q202*	NM_001130016	NP_001123488	Q13508	NAR3_HUMAN	ADP-ribosyltransferase 3 isoform a	232					protein ADP-ribosylation	anchored to membrane|integral to plasma membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity			ovary(2)	2			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TGAGGTTTTTCAAGTGTCACA	0.393													12	35					0	0	0.000978	0	0
FRAS1	80144	broad.mit.edu	37	4	79400617	79400617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr4:79400617G>A	uc003hlb.2	+	56	8628	c.8188G>A	c.(8188-8190)GAT>AAT	p.D2730N		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2725	Extracellular (Potential).|Calx-beta 2.				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						ATCAGGCTCTGATTTTAAATC	0.463													12	29					0	0	0.001855	0	0
PDHA2	5161	broad.mit.edu	37	4	96762199	96762199	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr4:96762199C>T	uc003htr.3	+	1	961	c.898C>T	c.(898-900)CGT>TGT	p.R300C		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	300					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	AGTCAGTTATCGTACACGAGA	0.433													10	39					0	0	0.000978	0	0
NPNT	255743	broad.mit.edu	37	4	106888537	106888537	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr4:106888537G>A	uc003hya.2	+	11	1743	c.1538G>A	c.(1537-1539)GGA>GAA	p.G513E	NPNT_uc011cfc.1_Missense_Mutation_p.G530E|NPNT_uc011cfd.1_Missense_Mutation_p.G543E|NPNT_uc011cfe.1_Missense_Mutation_p.G514E|NPNT_uc010ilt.1_Missense_Mutation_p.G484E|NPNT_uc011cff.1_Missense_Mutation_p.G484E|NPNT_uc010ilu.1_Intron	NM_001033047	NP_001028219	Q6UXI9	NPNT_HUMAN	nephronectin precursor	513	MAM.				cell differentiation	membrane	calcium ion binding			skin(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;5.41e-07)		GCCCTGTGGGGAAGAAATGGT	0.582													12	32					0	0	0.001368	0	0
ANK2	287	broad.mit.edu	37	4	114170951	114170951	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr4:114170951G>A	uc003ibe.3	+	10	1023	c.923G>A	c.(922-924)CGA>CAA	p.R308Q	ANK2_uc003ibd.3_Missense_Mutation_p.R287Q|ANK2_uc003ibf.3_Missense_Mutation_p.R308Q|ANK2_uc003ibc.2_Missense_Mutation_p.R284Q|ANK2_uc011cgb.1_Missense_Mutation_p.R323Q	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	308	ANK 9.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		TGTGCTGCACGAAGTGGGCAT	0.458													15	58					0	0	0.008871	0	0
SPATA5	166378	broad.mit.edu	37	4	123900467	123900467	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr4:123900467C>G	uc003iez.3	+	10	1868	c.1795C>G	c.(1795-1797)CTG>GTG	p.L599V	SPATA5_uc003iey.2_Missense_Mutation_p.L598V	NM_145207	NP_660208	Q8NB90	SPAT5_HUMAN	spermatogenesis associated 5	599					cell differentiation|multicellular organismal development|spermatogenesis	mitochondrion	ATP binding|nucleoside-triphosphatase activity				0						GAAGATTACTCTGAAGGATTT	0.443													3	62					0	0	0.004672	0	0
SH3D19	152503	broad.mit.edu	37	4	152049406	152049406	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr4:152049406C>T	uc010ipl.1	-	19	3164	c.2074G>A	c.(2074-2076)GAA>AAA	p.E692K	SH3D19_uc003imb.2_Missense_Mutation_p.E447K|SH3D19_uc003imc.2_Missense_Mutation_p.E633K|SH3D19_uc003ime.2_Missense_Mutation_p.E669K|SH3D19_uc010ipm.2_Missense_Mutation_p.E669K	NM_001009555	NP_001009555	Q5HYK7	SH319_HUMAN	SH3 domain containing 19 isoform a	692	SH3 4.				cellular membrane organization|positive regulation of membrane protein ectodomain proteolysis|post-Golgi vesicle-mediated transport	cytosol|Golgi apparatus|nucleus|plasma membrane	proline-rich region binding			ovary(1)|skin(1)	2	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)				TCCAGACGTTCCAGAATCTGG	0.532													17	50					0	0	0.004990	0	0
KIAA0922	23240	broad.mit.edu	37	4	154523767	154523767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr4:154523767C>T	uc003inm.3	+	23	2576	c.2524C>T	c.(2524-2526)CGC>TGC	p.R842C	KIAA0922_uc010ipp.2_Missense_Mutation_p.R843C|KIAA0922_uc010ipq.2_Missense_Mutation_p.R611C	NM_015196	NP_056011	A2VDJ0	T131L_HUMAN	hypothetical protein LOC23240 isoform 2	842	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				CCTAGAATTTCGCTTCACTCT	0.498													22	61					0	0	0.001882	0	0
TLL1	7092	broad.mit.edu	37	4	167020467	167020467	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr4:167020467G>A	uc003irh.1	+	20	3342	c.2695G>A	c.(2695-2697)GAT>AAT	p.D899N	TLL1_uc011cjn.1_Missense_Mutation_p.D922N|TLL1_uc011cjo.1_Missense_Mutation_p.D723N	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	899	CUB 5.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		AAAACCAAGAGATCTGTACTC	0.423													23	70					0	0	0.002780	0	0
ADAM29	11086	broad.mit.edu	37	4	175898197	175898197	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr4:175898197G>A	uc003iuc.2	+	5	2191	c.1521G>A	c.(1519-1521)AGG>AGA	p.R507R	ADAM29_uc003iud.2_Silent_p.R507R|ADAM29_uc010irr.2_Silent_p.R507R|ADAM29_uc011cki.1_Silent_p.R507R	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	507	Cys-rich.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		AGTGTAGGAGGATTTTTGGTG	0.448													26	67					0	0	0.004656	0	0
VEGFC	7424	broad.mit.edu	37	4	177649045	177649045	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr4:177649045C>T	uc003ius.1	-	3	869	c.439G>A	c.(439-441)GCG>ACG	p.A147T		NM_005429	NP_005420	P49767	VEGFC_HUMAN	vascular endothelial growth factor C	147					angiogenesis|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of mast cell chemotaxis|substrate-dependent cell migration|vascular endothelial growth factor receptor signaling pathway	membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity			lung(5)	5		Breast(14;0.000223)|Renal(120;0.00988)|Prostate(90;0.00996)|Melanoma(52;0.0101)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;1.59e-18)|Epithelial(43;3.68e-16)|OV - Ovarian serous cystadenocarcinoma(60;8.52e-09)|GBM - Glioblastoma multiforme(59;0.000546)|STAD - Stomach adenocarcinoma(60;0.00308)|Colorectal(24;0.025)|COAD - Colon adenocarcinoma(29;0.0359)|LUSC - Lung squamous cell carcinoma(193;0.0397)		GTGTTTGTCGCGACTCCAAAC	0.493													15	48					0	0	0.002450	0	0
FAT1	2195	broad.mit.edu	37	4	187534446	187534446	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr4:187534446G>A	uc003izf.2	-	13	9468	c.9280C>T	c.(9280-9282)CAT>TAT	p.H3094Y		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3094	Extracellular (Potential).|Cadherin 28.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						ACGAGAAGATGATAAACAGCT	0.468										HNSCC(5;0.00058)			16	36					0	0	0.007413	0	0
TRIML2	205860	broad.mit.edu	37	4	189013006	189013006	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr4:189013006C>T	uc003izl.2	-	7	721	c.685G>A	c.(685-687)GAT>AAT	p.D229N	TRIML2_uc003izj.1_Missense_Mutation_p.D57N|TRIML2_uc003izk.1_Missense_Mutation_p.D37N|TRIML2_uc011cle.1_Missense_Mutation_p.D304N	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	229	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		CCAGCCCCATCCTGCTGCCCA	0.527													24	66					0	0	0.003330	0	0
SLC9A3	6550	broad.mit.edu	37	5	476469	476469	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:476469C>T	uc003jbe.2	-	13	2027	c.1915G>A	c.(1915-1917)GAG>AAG	p.E639K	SLC9A3_uc011clx.1_Missense_Mutation_p.E630K|uc011cly.1_5'Flank	NM_004174	NP_004165	P48764	SL9A3_HUMAN	solute carrier family 9 (sodium/hydrogen	639	Interaction with PDZD3 (By similarity).|Cytoplasmic (Potential).					cell surface|integral to membrane	sodium:hydrogen antiporter activity				0			Epithelial(17;0.000529)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|all cancers(22;0.00186)|Lung(60;0.0863)			GGCGTGAGCTCGTGTCGGCTG	0.622													16	56					0	0	0.006122	0	0
SLC6A19	340024	broad.mit.edu	37	5	1217042	1217042	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:1217042C>T	uc003jbw.3	+	8	1211	c.1155C>T	c.(1153-1155)ATC>ATT	p.I385I		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	385	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			CCTGCGACATCAACGCCTTCC	0.657													36	99					0	0	0.004289	0	0
KIAA0947	23379	broad.mit.edu	37	5	5463406	5463406	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:5463406C>T	uc003jdm.3	+	13	4181	c.3959C>T	c.(3958-3960)CCA>CTA	p.P1320L		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	1320										ovary(1)|central_nervous_system(1)	2						GAACCAACCCCACAAGCAGCT	0.493													4	14					0	0	0.000248	0	0
ADCY2	108	broad.mit.edu	37	5	7709339	7709339	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:7709339C>T	uc003jdz.1	+	10	1484	c.1417C>T	c.(1417-1419)CCC>TCC	p.P473S	ADCY2_uc011cmo.1_Missense_Mutation_p.P293S	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	473	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						ACGACGGAGCCCCCAGCATCT	0.592													10	29					0	0	0.001368	0	0
DNAH5	1767	broad.mit.edu	37	5	13753555	13753555	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:13753555C>T	uc003jfd.2	-	63	10701	c.10659G>A	c.(10657-10659)CGG>CGA	p.R3553R	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3553					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ATGGAATTTTCCGGGCTTTCA	0.398									Kartagener_syndrome				38	97					0	0	0.006230	0	0
DNAH5	1767	broad.mit.edu	37	5	13829655	13829655	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:13829655C>T	uc003jfd.2	-	38	6450	c.6408G>A	c.(6406-6408)ACG>ACA	p.T2136T		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2136	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTTTGTAGAGCGTGAAAAACT	0.453									Kartagener_syndrome				24	48					0	0	0.006320	0	0
TRIO	7204	broad.mit.edu	37	5	14482699	14482699	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:14482699C>T	uc003jff.2	+	46	6480	c.6474C>T	c.(6472-6474)ATC>ATT	p.I2158I	TRIO_uc003jfg.2_RNA|TRIO_uc003jfh.1_Silent_p.I1807I	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	2158	PH 2.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					AGGGGAAAATCGTTGCCCAGG	0.453													6	17					0	0	0.003080	0	0
CDH9	1007	broad.mit.edu	37	5	26881619	26881619	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:26881619C>T	uc003jgs.1	-	12	2165	c.1996G>A	c.(1996-1998)GAA>AAA	p.E666K	CDH9_uc011cnv.1_Missense_Mutation_p.E259K	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	666	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						GTATCTTCTTCCCCGCCGCCT	0.428													49	128					0	0	0.003610	0	0
RASGRF2	5924	broad.mit.edu	37	5	80382667	80382667	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:80382667G>A	uc003kha.1	+	9	1285	c.1285G>A	c.(1285-1287)GAA>AAA	p.E429K	RASGRF2_uc011ctn.1_RNA|RASGRF2_uc003khb.1_Missense_Mutation_p.E257K	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	429	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		AATGCACGATGAAGTCAGCGA	0.468													6	28					0	0	0.001168	0	0
HAPLN1	1404	broad.mit.edu	37	5	82948460	82948460	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:82948460A>G	uc003kim.2	-	2	355	c.284T>C	c.(283-285)TTT>TCT	p.F95S	HAPLN1_uc003kin.2_Missense_Mutation_p.F95S	NM_001884	NP_001875	P10915	HPLN1_HUMAN	hyaluronan and proteoglycan link protein 1	95	Ig-like V-type.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			large_intestine(3)|ovary(1)|skin(1)	5		Lung NSC(167;0.0484)|all_lung(232;0.0522)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;7.82e-42)|Epithelial(54;5.88e-35)|all cancers(79;1.14e-29)		CATGGAAACAAAAACATCCAC	0.433													29	76					0	0	0.007291	0	0
EDIL3	10085	broad.mit.edu	37	5	83360657	83360657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:83360657G>A	uc003kio.1	-	8	1233	c.814C>T	c.(814-816)CGT>TGT	p.R272C	EDIL3_uc003kip.1_Missense_Mutation_p.R262C|EDIL3_uc011ctt.1_Missense_Mutation_p.R49C	NM_005711	NP_005702	O43854	EDIL3_HUMAN	EGF-like repeats and discoidin I-like	272	F5/8 type C 1.				cell adhesion|multicellular organismal development	extracellular region	calcium ion binding|integrin binding			skin(2)	2		Lung NSC(167;0.000121)|all_lung(232;0.000154)|Ovarian(174;0.0425)		OV - Ovarian serous cystadenocarcinoma(54;4.3e-40)|Epithelial(54;4.79e-32)|all cancers(79;1.54e-26)		ATGTTTCCACGAAACACCTGT	0.338													8	37					0	0	0.003080	0	0
PPIP5K2	23262	broad.mit.edu	37	5	102526637	102526637	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:102526637C>T	uc003kod.3	+	29	3966	c.3447C>T	c.(3445-3447)TCC>TCT	p.S1149S	PPIP5K2_uc011cva.1_RNA|PPIP5K2_uc003koe.2_Silent_p.S1128S|PPIP5K2_uc003kof.2_Silent_p.S331S	NM_015216	NP_056031	O43314	VIP2_HUMAN	Histidine acid phosphatase domain containing 1	1149					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity			ovary(1)|skin(1)	2						TTCTTGCTTCCATTGCTTCTC	0.373													20	69					0	0	0.001882	0	0
PDLIM4	8572	broad.mit.edu	37	5	131607052	131607052	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:131607052C>T	uc003kwn.2	+	5	640	c.563C>T	c.(562-564)TCC>TTC	p.S188F	uc003kwm.3_Intron|PDLIM4_uc003kwp.2_Missense_Mutation_p.S188F|PDLIM4_uc003kwo.2_Missense_Mutation_p.S188F	NM_003687	NP_003678	P50479	PDLI4_HUMAN	PDZ and LIM domain 4 isoform 1	188							protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GACCTGGGCTCCGAGGTGTAC	0.667													15	20					0	0	0.004007	0	0
PSD2	84249	broad.mit.edu	37	5	139189174	139189174	+	Missense_Mutation	SNP	G	A	A	rs147071263		TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:139189174G>A	uc003leu.1	+	2	354	c.149G>A	c.(148-150)CGA>CAA	p.R50Q		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	50					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGCACGAGCGAAGGGGCACC	0.657													5	33					0	0	0.000602	0	0
PCDHA3	56145	broad.mit.edu	37	5	140182605	140182605	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:140182605C>T	uc003lhf.2	+	1	1823	c.1823C>T	c.(1822-1824)TCG>TTG	p.S608L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.S608L	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	608	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGTGGCTTTCGTATGAGCTG	0.677													15	53					0	0	0.003163	0	0
PCDHA8	56140	broad.mit.edu	37	5	140223241	140223241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:140223241G>A	uc003lhs.2	+	1	2335	c.2335G>A	c.(2335-2337)GAT>AAT	p.D779N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.D779N	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	779	Cytoplasmic (Potential).|5 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTTCCTCCTGATCTGGGATC	0.493													14	39					0	0	0.001855	0	0
PCDHA10	56139	broad.mit.edu	37	5	140236221	140236221	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:140236221G>A	uc003lhx.2	+	1	588	c.588G>A	c.(586-588)CGG>CGA	p.R196R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Silent_p.R196R|PCDHA10_uc011dad.1_Silent_p.R196R	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	196	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGTTCTGCGGAAGCTGCTGG	0.398													25	61					0	0	0.003954	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140346714	140346714	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:140346714G>A	uc003lii.2	+	1	603	c.363G>A	c.(361-363)CTG>CTA	p.L121L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Silent_p.L121L	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	121	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCTCAGCTTGGAAGTGCTGG	0.627													17	33					0	0	0.008871	0	0
PCDHGA7	56108	broad.mit.edu	37	5	140763535	140763536	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:140763535_140763536CC>TT	uc003lka.1	+	1	1069_1070	c.1069_1070CC>TT	c.(1069-1071)CCT>TTT	p.P357F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003ljz.1_Missense_Mutation_p.P357F	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	357	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAGCTCAATCCCTGAAGACACA	0.426													12	40					0	0	0.004672	0	0
PCDH12	51294	broad.mit.edu	37	5	141335520	141335520	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:141335520C>T	uc003llx.2	-	1	3108	c.1897G>A	c.(1897-1899)GAG>AAG	p.E633K		NM_016580	NP_057664	Q9NPG4	PCD12_HUMAN	protocadherin 12 precursor	633	Cadherin 6.|Extracellular (Potential).				neuron recognition	integral to plasma membrane	calcium ion binding			ovary(3)	3		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAGAGGGGCTCTCCATTTGCC	0.577													14	33					0	0	0.001855	0	0
GNPDA1	10007	broad.mit.edu	37	5	141384620	141384620	+	Silent	SNP	G	A	A	rs139642867		TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:141384620G>A	uc003lmf.3	-	4	1230	c.471C>T	c.(469-471)ACC>ACT	p.T157T	GNPDA1_uc003lmg.3_Silent_p.T157T|GNPDA1_uc010jgh.2_Silent_p.T157T|GNPDA1_uc003lmh.3_Silent_p.T123T	NM_005471	NP_005462	P46926	GNPI1_HUMAN	glucosamine-6-phosphate deaminase 1	157					generation of precursor metabolites and energy|glucosamine catabolic process|N-acetylglucosamine metabolic process|single fertilization	cytoplasm	glucosamine-6-phosphate deaminase activity|hydrolase activity				0		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTTCACACGGGTCCTGGACA	0.607													11	26					0	0	0.000978	0	0
RBM27	54439	broad.mit.edu	37	5	145609352	145609352	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:145609352C>T	uc003lnz.3	+	5	634	c.468C>T	c.(466-468)TAC>TAT	p.Y156Y	RBM27_uc003lny.2_Silent_p.Y156Y	NM_018989	NP_061862	Q9P2N5	RBM27_HUMAN	RNA binding motif protein 27	156	Arg-rich.				mRNA processing	cytoplasm|nuclear speck	nucleotide binding|RNA binding|zinc ion binding			central_nervous_system(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ATGAATTGTACCGTGAGAAGT	0.403													27	88					0	0	0.003954	0	0
SPINK5	11005	broad.mit.edu	37	5	147495967	147495967	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:147495967G>A	uc003lox.2	+	22	2123	c.2050G>A	c.(2050-2052)GAG>AAG	p.E684K	SPINK5_uc010jgs.1_Missense_Mutation_p.E656K|SPINK5_uc010jgr.2_Missense_Mutation_p.E665K|SPINK5_uc003low.2_Missense_Mutation_p.E684K|SPINK5_uc003loy.2_Missense_Mutation_p.E684K	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	684	Kazal-like 10.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGGAAAGAAGAGGAAGATCA	0.458													15	67					0	0	0.003163	0	0
HAVCR1	26762	broad.mit.edu	37	5	156482325	156482325	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:156482325G>A	uc010jij.1	-	3	451	c.266C>T	c.(265-267)TCT>TTT	p.S89F	HAVCR1_uc011ddl.1_5'Flank|HAVCR1_uc003lwi.2_Missense_Mutation_p.S89F|HAVCR1_uc011ddm.1_Missense_Mutation_p.S89F	NM_001099414	NP_001092884	Q96D42	HAVR1_HUMAN	hepatitis A virus cellular receptor 1	89	Extracellular (Potential).|Ig-like V-type.				interspecies interaction between organisms	integral to membrane	receptor activity			ovary(1)|skin(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TATGGTCAAAGAGACATCCCT	0.468													164	444					0	0	0.003610	0	0
UBLCP1	134510	broad.mit.edu	37	5	158710336	158710336	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:158710336A>T	uc003lxq.2	+	10	1244	c.918A>T	c.(916-918)AAA>AAT	p.K306N		NM_145049	NP_659486	Q8WVY7	UBCP1_HUMAN	ubiquitin-like domain containing CTD phosphatase	306						nucleus	phosphoprotein phosphatase activity			ovary(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0523)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TAAATCACAAATATTGGGAAA	0.289													20	84					0	0	0.002780	0	0
DOCK2	1794	broad.mit.edu	37	5	169141086	169141086	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:169141086C>T	uc003maf.2	+	18	1794	c.1714C>T	c.(1714-1716)CGA>TGA	p.R572*	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Nonsense_Mutation_p.R64*|DOCK2_uc010jjl.1_Nonsense_Mutation_p.R90*	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	572	DHR-1.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TCCTTCTTATCGACACCATGT	0.572													15	50					0	0	0.007413	0	0
OR2V2	285659	broad.mit.edu	37	5	180582804	180582804	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr5:180582804C>T	uc011dhj.1	+	1	862	c.862C>T	c.(862-864)CCC>TCC	p.P288S		NM_206880	NP_996763	Q96R30	OR2V2_HUMAN	olfactory receptor, family 2, subfamily V,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2	all_cancers(89;8.26e-06)|all_epithelial(37;1.02e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0684)	all_cancers(40;0.0103)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.0652)|all_lung(500;0.149)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CATGCTCAACCCCCTCATTTA	0.602													15	29					0	0	0.003163	0	0
CAGE1	285782	broad.mit.edu	37	6	7373595	7373595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr6:7373595G>A	uc003mxi.2	-	4	1770	c.1049C>T	c.(1048-1050)TCT>TTT	p.S350F	CAGE1_uc003mxh.2_RNA|CAGE1_uc003mxj.2_Missense_Mutation_p.S241F|CAGE1_uc003mxk.1_Missense_Mutation_p.S241F	NM_205864	NP_995586	Q8TC20	CAGE1_HUMAN	cancer antigen 1	486	Potential.										0	Ovarian(93;0.0418)					CTCCTGTAAAGACAAGAACTC	0.393													6	30					0	0	0.001984	0	0
EDN1	1906	broad.mit.edu	37	6	12296235	12296235	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr6:12296235G>A	uc003nae.3	+	5	908	c.574G>A	c.(574-576)GAT>AAT	p.D192N	EDN1_uc003nad.2_3'UTR|EDN1_uc003naf.3_Missense_Mutation_p.D191N	NM_001955	NP_001946	P05305	EDN1_HUMAN	endothelin 1 precursor	192					artery smooth muscle contraction|calcium-mediated signaling|leukocyte activation|negative regulation of blood coagulation|negative regulation of cellular protein metabolic process|negative regulation of nitric-oxide synthase biosynthetic process|negative regulation of transcription from RNA polymerase II promoter|nitric oxide transport|peptide hormone secretion|phosphatidylinositol 3-kinase cascade|positive regulation of cardiac muscle hypertrophy|positive regulation of cell size|positive regulation of endothelial cell migration|positive regulation of heart rate|positive regulation of hormone secretion|positive regulation of JUN kinase activity|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of sarcomere organization|positive regulation of smooth muscle cell proliferation|prostaglandin biosynthetic process|protein kinase C deactivation|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	cytoplasm|extracellular space	cytokine activity|endothelin A receptor binding|endothelin B receptor binding|hormone activity			skin(1)	1	all_cancers(95;0.241)|Breast(50;0.0266)|Ovarian(93;0.12)	all_hematologic(90;0.117)				ATCTTTTCATGATCCCAAGCT	0.448													45	123					0	0	0.003610	0	0
SCGN	10590	broad.mit.edu	37	6	25661866	25661866	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr6:25661866G>A	uc003nfb.2	+	3	443	c.240G>A	c.(238-240)ATG>ATA	p.M80I	SCGN_uc010jpz.2_5'UTR	NM_006998	NP_008929	O76038	SEGN_HUMAN	secretagogin precursor	80	EF-hand 2.|2 (Potential).					extracellular region|transport vesicle membrane	calcium ion binding			ovary(2)|pancreas(1)	3						GCATTCGGATGAAAGAGGTAA	0.388													11	24					0	0	0.001368	0	0
C6orf15	29113	broad.mit.edu	37	6	31079793	31079793	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr6:31079793G>A	uc003nsk.1	-	2	343	c.343C>T	c.(343-345)CCT>TCT	p.P115S	PSORS1C1_uc003nsl.1_5'Flank|PSORS1C1_uc010jsj.1_5'Flank	NM_014070	NP_054789	Q6UXA7	CF015_HUMAN	STG protein precursor	115											0						ATCTGCCAAGGATCCTCAGGG	0.652													17	55					0	0	0.001523	0	0
PRRT1	80863	broad.mit.edu	37	6	32117453	32117453	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr6:32117453A>G	uc003nzt.2	-	3	721	c.605T>C	c.(604-606)CTC>CCC	p.L202P	PRRT1_uc003nzs.2_Missense_Mutation_p.L243P|PRRT1_uc003nzu.2_Silent_p.S94S	NM_030651	NP_085154	Q99946	PRRT1_HUMAN	NG5 protein	202					response to biotic stimulus	integral to membrane				breast(1)	1						CGGCGGGGGGAGAGTGGAGGT	0.672													4	155					0	0	0.000602	0	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333974	33333974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr6:33333974G>A	uc003shx.2	-	1	166	c.32C>T	c.(31-33)ACC>ATC	p.T11I		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						TCCAGACACGGTGGCAGCATC	0.602													14	35					0	0	0.004007	0	0
BCLAF1	9774	broad.mit.edu	37	6	136582483	136582483	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr6:136582483G>T	uc003qgx.1	-	12	2930	c.2677C>A	c.(2677-2679)CAA>AAA	p.Q893K	BCLAF1_uc011edb.1_Missense_Mutation_p.Q172K|BCLAF1_uc003qgw.1_Missense_Mutation_p.Q720K|BCLAF1_uc003qgy.1_Missense_Mutation_p.Q842K|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.Q891K	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	893					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		CCATCCCCTTGGTATTTGTCA	0.413													21	151					3.62473e-10	1.1716e-09	0.001882	1	0
BCLAF1	9774	broad.mit.edu	37	6	136599059	136599059	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr6:136599059C>T	uc003qgx.1	-	4	1213	c.960G>A	c.(958-960)TCG>TCA	p.S320S	BCLAF1_uc003qgw.1_Silent_p.S320S|BCLAF1_uc003qgy.1_Silent_p.S318S|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Silent_p.S318S	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	320					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		CAGGATAAAACGAGGAACGGC	0.398													11	68					0	0	0.004007	0	0
MAP3K4	4216	broad.mit.edu	37	6	161469968	161469968	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr6:161469968C>T	uc003qtn.2	+	3	806	c.664C>T	c.(664-666)CGT>TGT	p.R222C	MAP3K4_uc010kkc.1_Missense_Mutation_p.R222C|MAP3K4_uc003qto.2_Missense_Mutation_p.R222C|MAP3K4_uc011efz.1_RNA|MAP3K4_uc011ega.1_5'UTR	NM_005922	NP_005913	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	222					activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			ovary(3)|lung(3)|skin(2)|stomach(1)	9		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		TCCAGCAGATCGTTTAAAGTT	0.448													4	14					0	0	0.000248	0	0
TBP	6908	broad.mit.edu	37	6	170871188	170871188	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr6:170871188T>C	uc003qxt.2	+	3	596	c.364T>C	c.(364-366)TTC>CTC	p.F122L	TBP_uc003qxu.2_Missense_Mutation_p.F122L|TBP_uc011ehf.1_Missense_Mutation_p.F102L|TBP_uc011ehg.1_Missense_Mutation_p.F122L	NM_003194	NP_003185	P20226	TBP_HUMAN	TATA box binding protein	122					cell death|interspecies interaction between organisms|transcription elongation from RNA polymerase II promoter|transcription from RNA polymerase III promoter|viral reproduction	transcription factor TFIIA complex|transcription factor TFIID complex	repressing transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;1.07e-22)|BRCA - Breast invasive adenocarcinoma(81;5.01e-06)|GBM - Glioblastoma multiforme(31;0.00591)		ACCACAGCTCTTCCACTCACA	0.498													17	30					0	0	0.008871	0	0
MPP6	51678	broad.mit.edu	37	7	24663358	24663358	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr7:24663358C>T	uc003swx.2	+	3	371	c.72C>T	c.(70-72)TTC>TTT	p.F24F	MPP6_uc003swy.2_Silent_p.F24F	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	24	L27 1.				protein complex assembly		protein binding				0						ACCTAATTTTCCTCAAGGGAA	0.343													7	70					0	0	0.001984	0	0
HOXA3	3200	broad.mit.edu	37	7	27148070	27148070	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr7:27148070G>A	uc011jzl.1	-	3	996	c.796C>T	c.(796-798)CGC>TGC	p.R266C	HOXA3_uc011jzk.1_Missense_Mutation_p.R108C|HOXA3_uc003syk.2_Missense_Mutation_p.R266C	NM_030661	NP_109377	O43365	HXA3_HUMAN	homeobox A3 isoform a	266					angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(2)	2						ACGGGGCTGCGACTTGGAGAC	0.602													80	63					0	0	0.003610	0	0
HOXA4	3201	broad.mit.edu	37	7	27169137	27169137	+	Silent	SNP	G	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr7:27169137G>T	uc003sym.3	-	2	717	c.670C>A	c.(670-672)CGG>AGG	p.R224R	HOXA3_uc003syk.2_5'Flank	NM_002141	NP_002132	Q00056	HXA4_HUMAN	homeobox A4	224	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)	1						ACCTGCTGCCGGGTGTAGGCG	0.512													5	81					0.000602214	0.00193731	0.000602	1	0
ZMIZ2	83637	broad.mit.edu	37	7	44798934	44798934	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr7:44798934C>A	uc003tlr.2	+	7	991	c.868C>A	c.(868-870)CAG>AAG	p.Q290K	ZMIZ2_uc003tlq.2_Missense_Mutation_p.Q258K|ZMIZ2_uc003tls.2_Missense_Mutation_p.Q290K|ZMIZ2_uc003tlt.2_5'Flank|ZMIZ2_uc010kyj.2_5'Flank	NM_031449	NP_113637	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2 isoform 1	290	Pro-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			ovary(2)|large_intestine(2)|breast(1)	5						CAGCACCGCCCAGTTTGCGCC	0.642													6	153					0.00198382	0.00635194	0.001984	1	0
PKD1L1	168507	broad.mit.edu	37	7	47886648	47886648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr7:47886648G>A	uc003tny.1	-	32	4982	c.4982C>T	c.(4981-4983)TCC>TTC	p.S1661F		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1661	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						ATCCAATAAGGATAAATAGCC	0.388													5	39					0	0	0.000602	0	0
ABCA13	154664	broad.mit.edu	37	7	48278969	48278969	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr7:48278969C>T	uc003toq.2	+	9	1054	c.1029C>T	c.(1027-1029)GTC>GTT	p.V343V	ABCA13_uc010kyr.2_5'UTR	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	343					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						ACTATCTTGTCCATGCAGTCA	0.502													10	53					0	0	0.006214	0	0
PCLO	27445	broad.mit.edu	37	7	82579037	82579037	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr7:82579037G>A	uc003uhx.2	-	6	11156	c.10867C>T	c.(10867-10869)CTT>TTT	p.L3623F	PCLO_uc003uhv.2_Missense_Mutation_p.L3623F|PCLO_uc010lec.2_Missense_Mutation_p.L588F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3554					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGTGAGTAAAGGACTTTGGGG	0.478													89	56					0	0	0.003610	0	0
PCLO	27445	broad.mit.edu	37	7	82580556	82580556	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr7:82580556C>T	uc003uhx.2	-	6	9637	c.9348G>A	c.(9346-9348)AGG>AGA	p.R3116R	PCLO_uc003uhv.2_Silent_p.R3116R|PCLO_uc010lec.2_Silent_p.R81R	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3047					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CAGACAAATCCCTCACTGTGG	0.448													26	17					0	0	0.005443	0	0
CYP3A4	1576	broad.mit.edu	37	7	99365994	99365994	+	Missense_Mutation	SNP	G	A	A	rs55901263		TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr7:99365994G>A	uc003urv.1	-	7	757	c.653C>T	c.(652-654)CCA>CTA	p.P218L	CYP3A4_uc003urw.1_Missense_Mutation_p.P218L|CYP3A4_uc011kiz.1_Missense_Mutation_p.P177L|CYP3A4_uc011kja.1_Missense_Mutation_p.P169L|CYP3A4_uc011kjb.1_Missense_Mutation_p.P68L	NM_017460	NP_059488	P08684	CP3A4_HUMAN	cytochrome P450, family 3, subfamily A,	218					alkaloid catabolic process|androgen metabolic process|exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid catabolic process|xenobiotic metabolic process	cell surface|endoplasmic reticulum membrane|integral to membrane|microsome	albendazole monooxygenase activity|caffeine oxidase activity|electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding|quinine 3-monooxygenase activity|steroid binding|taurochenodeoxycholate 6alpha-hydroxylase activity|testosterone 6-beta-hydroxylase activity|vitamin D 24-hydroxylase activity|vitamin D3 25-hydroxylase activity			central_nervous_system(3)|ovary(1)	4	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)				Albendazole(DB00518)|Alclometasone(DB00240)|Alfentanil(DB00802)|Alfuzosin(DB00346)|Aliskiren(DB01258)|Almotriptan(DB00918)|Alosetron(DB00969)|Alprazolam(DB00404)|Amlodipine(DB00381)|Amprenavir(DB00701)|Aprepitant(DB00673)|Aripiprazole(DB01238)|Astemizole(DB00637)|Atazanavir(DB01072)|Atorvastatin(DB01076)|Benazepril(DB00542)|Bepridil(DB01244)|Betamethasone(DB00443)|Bexarotene(DB00307)|Bortezomib(DB00188)|Bosentan(DB00559)|Bromocriptine(DB01200)|Budesonide(DB01222)|Bupivacaine(DB00297)|Buprenorphine(DB00921)|Buspirone(DB00490)|Busulfan(DB01008)|Carbamazepine(DB00564)|Cevimeline(DB00185)|Chlorpheniramine(DB01114)|Ciclesonide(DB01410)|Cilostazol(DB01166)|Cinacalcet(DB01012)|Cisapride(DB00604)|Clarithromycin(DB01211)|Clindamycin(DB01190)|Clofibrate(DB00636)|Clonazepam(DB01068)|Clopidogrel(DB00758)|Cocaine(DB00907)|Conivaptan(DB00872)|Conjugated Estrogens(DB00286)|Cyproterone(DB04839)|Darifenacin(DB00496)|Darunavir(DB01264)|Dasatinib(DB01254)|Delavirdine(DB00705)|Desogestrel(DB00304)|Dexamethasone(DB01234)|Diazepam(DB00829)|Dihydroergotamine(DB00320)|Diltiazem(DB00343)|Diphenhydramine(DB01075)|Disopyramide(DB00280)|Dofetilide(DB00204)|Dolasetron(DB00757)|Domperidone(DB01184)|Donepezil(DB00843)|Doxorubicin(DB00997)|Drospirenone(DB01395)|Dutasteride(DB01126)|Efavirenz(DB00625)|Eletriptan(DB00216)|Enalapril(DB00584)|Epirubicin(DB00445)|Eplerenone(DB00700)|Ergotamine(DB00696)|Erlotinib(DB00530)|Erythromycin(DB00199)|Escitalopram(DB01175)|Esomeprazole(DB00736)|Estazolam(DB01215)|Eszopiclone(DB00402)|Ethinyl Estradiol(DB00977)|Ethosuximide(DB00593)|Etonogestrel(DB00294)|Etoposide(DB00773)|Etoricoxib(DB01628)|Exemestane(DB00990)|Felodipine(DB01023)|Fentanyl(DB00813)|Fexofenadine(DB00950)|Finasteride(DB01216)|Fluconazole(DB00196)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Fosamprenavir(DB01319)|Fulvestrant(DB00947)|Galantamine(DB00674)|Gefitinib(DB00317)|Gemfibrozil(DB01241)|Granisetron(DB00889)|Grepafloxacin(DB00365)|Halofantrine(DB01218)|Hydrocodone(DB00956)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Hydromorphone(DB00327)|Imatinib(DB00619)|Indinavir(DB00224)|Ipratropium(DB00332)|Irinotecan(DB00762)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Isradipine(DB00270)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lercanidipine(DB00528)|Letrozole(DB01006)|Levobupivacaine(DB01002)|Levomethadyl Acetate(DB01227)|Levothyroxine(DB00451)|Lomustine(DB01206)|Loperamide(DB00836)|Lopinavir(DB01601)|Loratadine(DB00455)|Losartan(DB00678)|Lovastatin(DB00227)|Maraviroc(DB04835)|Marinol(DB00470)|Mebendazole(DB00643)|Medroxyprogesterone(DB00603)|Methadone(DB00333)|Methylprednisolone(DB00959)|Metyrapone(DB01011)|Mibefradil(DB01388)|Midazolam(DB00683)|Mifepristone(DB00834)|Mirtazapine(DB00370)|Modafinil(DB00745)|Mometasone(DB00764)|Montelukast(DB00471)|Nateglinide(DB00731)|Nefazodone(DB01149)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicardipine(DB00622)|Nifedipine(DB01115)|Nimodipine(DB00393)|Nisoldipine(DB00401)|Nitrendipine(DB01054)|Norethindrone(DB00717)|Norgestrel(DB00506)|Nystatin(DB00646)|Ondansetron(DB00904)|Oxybutynin(DB01062)|Paclitaxel(DB01229)|Paliperidone(DB01267)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Paricalcitol(DB00910)|Phenmetrazine(DB00830)|Pimecrolimus(DB00337)|Pimozide(DB01100)|Pioglitazone(DB01132)|Posaconazole(DB01263)|Pranlukast(DB01411)|Prednisolone(DB00860)|Prednisone(DB00635)|Prochlorperazine(DB00433)|Quetiapine(DB01224)|Quinapril(DB00881)|Quinine(DB00468)|Rabeprazole(DB01129)|Ranolazine(DB00243)|Reboxetine(DB00234)|Retapamulin(DB01256)|Rifabutin(DB00615)|Rifampin(DB01045)|Rimonabant(DB06155)|Ritonavir(DB00503)|Rofecoxib(DB00533)|Roxithromycin(DB00778)|Salmeterol(DB00938)|Saquinavir(DB01232)|Sertindole(DB06144)|Sibutramine(DB01105)|Simvastatin(DB00641)|Sirolimus(DB00877)|Sitagliptin(DB01261)|Solifenacin(DB01591)|Sorafenib(DB00398)|Sunitinib(DB01268)|Tacrolimus(DB00864)|Tadalafil(DB00820)|Tamoxifen(DB00675)|Telithromycin(DB00976)|Terconazole(DB00251)|Terfenadine(DB00342)|Testosterone(DB00624)|Tiagabine(DB00906)|Ticlopidine(DB00208)|Tinidazole(DB00911)|Tiotropium(DB01409)|Tipranavir(DB00932)|Toremifene(DB00539)|Triazolam(DB00897)|Trimetrexate(DB01157)|Troglitazone(DB00197)|Valdecoxib(DB00580)|Vardenafil(DB00862)|Vinblastine(DB00570)|Vincristine(DB00541)|Vindesine(DB00309)|Vinorelbine(DB00361)|Voriconazole(DB00582)|Zaleplon(DB00962)|Zileuton(DB00744)|Ziprasidone(DB00246)|Zolpidem(DB00425)|Zonisamide(DB00909)	GAGAAAGAATGGATCCAAAAA	0.279													12	60					0	0	0.001855	0	0
AGFG2	3268	broad.mit.edu	37	7	100153332	100153332	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr7:100153332C>T	uc003uvf.2	+	6	987	c.851C>T	c.(850-852)TCG>TTG	p.S284L	AGFG2_uc003uvg.1_3'UTR|AGFG2_uc010lgy.2_Missense_Mutation_p.R146C	NM_006076	NP_006067	O95081	AGFG2_HUMAN	ArfGAP with FG repeats 2	284					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			central_nervous_system(1)	1						GGTCAAGCCTCGTTCCAGGCC	0.532													95	93					0	0	0.003610	0	0
MOSPD3	64598	broad.mit.edu	37	7	100210447	100210448	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr7:100210447_100210448GG>AA	uc003uvq.2	+	2	235_236	c.33_34GG>AA	c.(31-36)CTGGTG>CTAATG	p.V12M	MOSPD3_uc003uvr.2_Missense_Mutation_p.V12M|MOSPD3_uc003uvs.2_Missense_Mutation_p.V12M|MOSPD3_uc003uvt.2_Missense_Mutation_p.V12M	NM_001040097	NP_001035186	O75425	MSPD3_HUMAN	motile sperm domain containing 3 isoform a	12						integral to membrane	structural molecule activity			ovary(2)	2	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					ACCAGGAGCTGGTGGGTccggg	0.564													11	21					0	0	0.004672	0	0
RELN	5649	broad.mit.edu	37	7	103202089	103202089	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr7:103202089C>T	uc003vca.2	-	36	5579	c.5419G>A	c.(5419-5421)GAT>AAT	p.D1807N	RELN_uc010liz.2_Missense_Mutation_p.D1807N	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1807					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CCATTGAAATCGTCTTTAAGA	0.453													11	42					0	0	0.000978	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				39	30					0	0	0.007835	0	0
OR9A2	135924	broad.mit.edu	37	7	142723915	142723915	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr7:142723915G>A	uc003wcc.1	-	1	305	c.305C>T	c.(304-306)TCC>TTC	p.S102F		NM_001001658	NP_001001658	Q8NGT5	OR9A2_HUMAN	olfactory receptor, family 9, subfamily A,	102					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.059)					GGTCCCACAGGAAAAGTTGAG	0.463													13	57					0	0	0.001368	0	0
OR2A12	346525	broad.mit.edu	37	7	143792812	143792812	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr7:143792812C>T	uc011kty.1	+	1	612	c.612C>T	c.(610-612)TTC>TTT	p.F204F		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	204	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					GTTCTGCGTTCATCTTAGTGG	0.527													44	184					0	0	0.003610	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147092834	147092834	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr7:147092834C>T	uc003weu.1	+	10	2148	c.1632C>T	c.(1630-1632)TTC>TTT	p.F544F		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	544	Extracellular (Potential).|Laminin G-like 2.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CGGGAAGTTTCGCGAATGTCA	0.438										HNSCC(39;0.1)			36	115					0	0	0.004289	0	0
GALNTL5	168391	broad.mit.edu	37	7	151684324	151684324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr7:151684324G>A	uc003wkp.2	+	5	839	c.616G>A	c.(616-618)GGG>AGG	p.G206R	GALNTL5_uc003wkq.2_Intron|GALNTL5_uc003wkr.2_RNA|GALNTL5_uc003wks.2_RNA|GALNTL5_uc010lqf.2_Missense_Mutation_p.G95R	NM_145292	NP_660335	Q7Z4T8	GLTL5_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	206	Catalytic subdomain A.|Lumenal (Potential).					Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2	all_neural(206;0.187)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00427)	UCEC - Uterine corpus endometrioid carcinoma (81;0.18)|BRCA - Breast invasive adenocarcinoma(188;0.166)		AAAGAGAGAGGGGCTGATTCG	0.428													8	80					0	0	0.004482	0	0
MYOM2	9172	broad.mit.edu	37	8	2057229	2057230	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr8:2057229_2057230GG>AA	uc003wpx.3	+	25	3225_3226	c.3087_3088GG>AA	c.(3085-3090)AAGGGG>AAAAGG	p.G1030R	MYOM2_uc011kwi.1_Missense_Mutation_p.G455R	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	1030					muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		TTTTTGATAAGGGGCGGGTTCG	0.436													9	34					0	0	0.004672	0	0
PCM1	5108	broad.mit.edu	37	8	17863888	17863888	+	Silent	SNP	A	G	G			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr8:17863888A>G	uc003wyi.3	+	30	5366	c.4944A>G	c.(4942-4944)CAA>CAG	p.Q1648Q	PCM1_uc011kyh.1_Silent_p.Q1640Q|PCM1_uc003wyj.3_Silent_p.Q1594Q|PCM1_uc011kyi.1_Silent_p.Q447Q|PCM1_uc011kyj.1_Silent_p.Q404Q|PCM1_uc003wyk.3_Silent_p.Q330Q|PCM1_uc011kyk.1_Silent_p.Q264Q	NM_006197	NP_006188	Q15154	PCM1_HUMAN	pericentriolar material 1	1648	Interaction with HAP1.				centrosome organization|cilium assembly|G2/M transition of mitotic cell cycle|interkinetic nuclear migration|microtubule anchoring|negative regulation of neurogenesis|protein localization to centrosome	centriolar satellite|cytosol|nuclear membrane|pericentriolar material	identical protein binding		PCM1/JAK2(30)	haematopoietic_and_lymphoid_tissue(30)|breast(4)|ovary(2)	36				Colorectal(111;0.0789)		TTCATAAACAACTTGGAAGTA	0.388			T	RET|JAK2	papillary thyroid|CML|MPD								10	45					0	0	0.000978	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24251645	24251645	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr8:24251645G>A	uc003xdz.2	+	4	568	c.348G>A	c.(346-348)ACG>ACA	p.T116T	ADAMDEC1_uc010lub.2_Silent_p.T37T|ADAMDEC1_uc011lab.1_Silent_p.T37T	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	116					integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		AAATTACCACGAAACCTGAGA	0.458													9	21					0	0	0.006214	0	0
ADAM7	8756	broad.mit.edu	37	8	24350590	24350590	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr8:24350590G>A	uc003xeb.2	+	16	1803	c.1690G>A	c.(1690-1692)GGG>AGG	p.G564R	ADAM7_uc003xec.2_Missense_Mutation_p.G336R	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	564	Extracellular (Potential).|Cys-rich.				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		CTGCACTGGAGGGGAGCTTTC	0.403													14	53					0	0	0.004990	0	0
BAG4	9530	broad.mit.edu	37	8	38065064	38065064	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr8:38065064C>T	uc003xky.1	+	3	695	c.413C>T	c.(412-414)CCA>CTA	p.P138L	BAG4_uc003xkz.1_Missense_Mutation_p.P102L	NM_004874	NP_004865	O95429	BAG4_HUMAN	BCL2-associated athanogene 4	138					anti-apoptosis|apoptosis|protein folding	cytoplasm|nucleus	receptor signaling protein activity			ovary(1)	1	Colorectal(12;0.000442)	all_lung(54;0.00787)|Lung NSC(58;0.0295)|Hepatocellular(245;0.121)				GCGTATGGTCCAACATACCCC	0.423													15	27					0	0	0.004007	0	0
ADAM2	2515	broad.mit.edu	37	8	39626988	39626988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr8:39626988G>A	uc003xnj.2	-	12	1210	c.1135C>T	c.(1135-1137)CCT>TCT	p.P379S	ADAM2_uc003xnk.2_Missense_Mutation_p.P360S|ADAM2_uc011lck.1_Missense_Mutation_p.P379S|ADAM2_uc003xnl.2_Missense_Mutation_p.P253S	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	379	Extracellular (Potential).				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		TTGAAAAAAGGATCTAAGCGA	0.443													16	39					0	0	0.004007	0	0
SNAI2	6591	broad.mit.edu	37	8	49831426	49831426	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr8:49831426G>A	uc003xqp.2	-	3	911	c.747C>T	c.(745-747)ACC>ACT	p.T249T		NM_003068	NP_003059	O43623	SNAI2_HUMAN	snail 2	249	C2H2-type 5; atypical.				canonical Wnt receptor signaling pathway|ectoderm and mesoderm interaction|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		all_cancers(86;0.0368)|all_epithelial(80;0.000624)|Lung NSC(129;0.0019)|all_lung(136;0.00502)				TTCTGGAGAAGGTTTTGGAGC	0.448													27	105					0	0	0.008361	0	0
RP1	6101	broad.mit.edu	37	8	55533670	55533670	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr8:55533670C>T	uc003xsd.1	+	2	292	c.144C>T	c.(142-144)TTC>TTT	p.F48F	RP1_uc011ldy.1_Silent_p.F48F	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	48	Doublecortin 1.				axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ACCCCCAATTCGGCGGGGTCA	0.552													25	35					0	0	0.004656	0	0
RPS20	6224	broad.mit.edu	37	8	56985769	56985769	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr8:56985769G>A	uc003xsn.2	-	4	438	c.240C>T	c.(238-240)TTC>TTT	p.F80F	RPS20_uc003xsm.2_Silent_p.F80F	NM_001023	NP_001014	P60866	RS20_HUMAN	ribosomal protein S20 isoform 2	80					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	protein binding|RNA binding|structural constituent of ribosome				0		all_lung(136;0.0548)|Lung NSC(129;0.0718)|all_epithelial(80;0.155)	Epithelial(17;0.00117)|all cancers(17;0.00879)			TTCTCATCTGGAAACGATCCC	0.413													25	98					0	0	0.007291	0	0
PREX2	80243	broad.mit.edu	37	8	68939480	68939480	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr8:68939480G>A	uc003xxv.1	+	5	492	c.465G>A	c.(463-465)CGG>CGA	p.R155R	PREX2_uc003xxu.1_Silent_p.R155R|PREX2_uc011lez.1_Silent_p.R90R	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	155	DH.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TTGGAGGACGGAAGAACACAG	0.358													9	45					0	0	0.004482	0	0
GEM	2669	broad.mit.edu	37	8	95262690	95262690	+	Missense_Mutation	SNP	C	T	T	rs141202489	byFrequency	TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr8:95262690C>T	uc003ygj.2	-	5	988	c.739G>A	c.(739-741)GAG>AAG	p.E247K	GEM_uc003ygi.2_Missense_Mutation_p.E247K	NM_005261	NP_005252	P55040	GEM_HUMAN	GTP-binding mitogen-induced T-cell protein	247					cell surface receptor linked signaling pathway|immune response|small GTPase mediated signal transduction	internal side of plasma membrane	calmodulin binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding			lung(1)	1	Breast(36;4.65e-06)	Myeloproliferative disorder(644;0.204)	BRCA - Breast invasive adenocarcinoma(8;0.00691)			TCATTCTTCTCCTTGCTGTCC	0.562													8	31					0	0	0.006214	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457192	110457192	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr8:110457192C>T	uc003yne.2	+	38	5198	c.5094C>T	c.(5092-5094)TTC>TTT	p.F1698F		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1698	IPT/TIG 9.|Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TGGGTCATTTCCCATGTAAAG	0.438										HNSCC(38;0.096)			58	125					0	0	0.003610	0	0
CSMD3	114788	broad.mit.edu	37	8	113318268	113318268	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr8:113318268C>T	uc003ynu.2	-	51	8198	c.8039G>A	c.(8038-8040)TGG>TAG	p.W2680*	CSMD3_uc003yns.2_Nonsense_Mutation_p.W1882*|CSMD3_uc003ynt.2_Nonsense_Mutation_p.W2640*|CSMD3_uc011lhx.1_Nonsense_Mutation_p.W2576*	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2680	Extracellular (Potential).|Sushi 15.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ATGATTGCTCCATGTTCCATC	0.378										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			27	61					0	0	0.008361	0	0
LRRC6	23639	broad.mit.edu	37	8	133623588	133623588	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr8:133623588G>A	uc003ytk.2	-	9	1070	c.996C>T	c.(994-996)ATC>ATT	p.I332I	LRRC6_uc003ytl.2_RNA	NM_012472	NP_036604	Q86X45	LRRC6_HUMAN	leucine rich repeat containing 6	332	CS.					cytoplasm				ovary(1)|kidney(1)	2	Ovarian(258;0.00352)|Esophageal squamous(12;0.00507)|all_neural(3;0.0052)|Medulloblastoma(3;0.0922)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			CATCAACATCGATTAAAGAGG	0.299													16	47					0	0	0.007413	0	0
DENND3	22898	broad.mit.edu	37	8	142188277	142188277	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr8:142188277G>A	uc003yvy.2	+	16	2856	c.2578G>A	c.(2578-2580)GAT>AAT	p.D860N	DENND3_uc010mep.2_Missense_Mutation_p.D821N	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	860										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			ATCCTACTTTGATAAGATGAG	0.493													11	41					0	0	0.000978	0	0
HEATR7A	727957	broad.mit.edu	37	8	145246704	145246704	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr8:145246704C>T	uc003zbk.3	+	9	1038	c.801C>T	c.(799-801)CTC>CTT	p.L267L	HEATR7A_uc003zbg.2_Silent_p.L267L|HEATR7A_uc003zbh.3_Silent_p.L267L|HEATR7A_uc003zbi.3_Silent_p.L267L|HEATR7A_uc011lla.1_Silent_p.L267L|HEATR7A_uc010mft.2_Silent_p.L267L	NM_032450	NP_115826	Q8NDA8	HTR7A_HUMAN	HEAT repeat containing 7A isoform 1	267							binding				0						CCAAGCTCCTCCCTGGGATTC	0.612													4	18					0	0	0.000248	0	0
GLIS3	169792	broad.mit.edu	37	9	3937029	3937029	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr9:3937029G>A	uc003zhw.1	-	4	1600	c.1406C>T	c.(1405-1407)ACC>ATC	p.T469I	GLIS3_uc003zhx.1_Missense_Mutation_p.T624I|GLIS3_uc010mhf.1_5'UTR|GLIS3_uc003zhv.1_RNA|GLIS3_uc003zhy.1_Missense_Mutation_p.T402I|GLIS3_uc003zhz.1_Missense_Mutation_p.T402I	NM_152629	NP_689842	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform b	469					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		CATTCTTACGGTGTCCAGATG	0.557													26	46					0	0	0.007291	0	0
C9orf68	55064	broad.mit.edu	37	9	4625355	4625355	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr9:4625355C>T	uc011llz.1	-	5	705	c.467G>A	c.(466-468)GGA>GAA	p.G156E	C9orf68_uc003zik.2_RNA|C9orf68_uc003zil.2_RNA|C9orf68_uc010mhj.2_Missense_Mutation_p.G214E|C9orf68_uc011lly.1_Missense_Mutation_p.G91E	NM_001039395	NP_001034484	B4DIY4	B4DIY4_HUMAN	hypothetical protein LOC55064	156											0		Breast(48;0.0456)		GBM - Glioblastoma multiforme(50;0.0222)		AGGCTTGCTTCCTCCAGAGAT	0.448													20	22					0	0	0.001523	0	0
CDKN2A	1029	broad.mit.edu	37	9	21971116	21971116	+	Missense_Mutation	SNP	G	A	A	rs11552823		TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr9:21971116G>A	uc003zpk.2	-	2	454	c.242C>T	c.(241-243)CCC>CTC	p.P81L	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Silent_p.T136T	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	81	ANK 3.		P -> T (in CMM2; loss of CDK4 binding).		cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.?(13)|p.P81L(8)|p.P81H(2)|p.T79fs*37(1)|p.L65fs*38(1)|p.A76fs*64(1)|p.P81T(1)|p.E61_L94del(1)|p.A68fs*3(1)|p.P81_A85del(1)|p.R80fs*34(1)|p.P81fs*38(1)|p.P81S(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		GTCGTGCACGGGTCGGGTGAG	0.741		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			48	79					0	0	0.003610	0	0
FAM75A6	389730	broad.mit.edu	37	9	43627091	43627091	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr9:43627091G>A	uc011lrb.1	-	4	1625	c.1596C>T	c.(1594-1596)TCC>TCT	p.S532S		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	532						integral to membrane					0						TTTCAGGTAGGGAGAGAGCTT	0.468													169	430					0	0	0.003610	0	0
PCSK5	5125	broad.mit.edu	37	9	78804604	78804604	+	Silent	SNP	C	T	T	rs138803714		TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr9:78804604C>T	uc004ajz.2	+	20	3106	c.2568C>T	c.(2566-2568)TGC>TGT	p.C856C	PCSK5_uc004aka.2_RNA|PCSK5_uc004akb.2_Silent_p.C130C	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	856	CRM (Cys-rich motif).				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						GTACAAGCTGCCCTAGTGGGT	0.403													14	50					0	0	0.002450	0	0
PRUNE2	158471	broad.mit.edu	37	9	79324474	79324474	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr9:79324474G>A	uc010mpk.2	-	8	2840	c.2716C>T	c.(2716-2718)CCT>TCT	p.P906S		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	906					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CTAGTTTTAGGATCCACTAAA	0.428													46	121					0	0	0.003610	0	0
GNA14	9630	broad.mit.edu	37	9	80049349	80049349	+	Silent	SNP	T	C	C			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr9:80049349T>C	uc004aku.2	-	3	922	c.399A>G	c.(397-399)CAA>CAG	p.Q133Q		NM_004297	NP_004288	O95837	GNA14_HUMAN	G alpha 14	133					activation of phospholipase C activity by dopamine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation	heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			ovary(2)	2						TGCCTGGATCTTGCCAGAGCT	0.572											OREG0019263	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	27					0	0	0.001855	0	0
TLE4	7091	broad.mit.edu	37	9	82267687	82267687	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr9:82267687C>T	uc004ald.2	+	7	1398	c.549C>T	c.(547-549)CAC>CAT	p.H183H	TLE4_uc004alc.2_Silent_p.H190H|TLE4_uc010mpr.2_Silent_p.H69H|TLE4_uc004ale.2_5'UTR|TLE4_uc011lsq.1_Silent_p.H158H|TLE4_uc010mps.2_Silent_p.H183H|TLE4_uc004alf.2_Silent_p.H129H	NM_007005	NP_008936	O60756	BCE1_HUMAN	transducin-like enhancer protein 4	Error:Variant_position_missing_in_O60756_after_alignment										lung(2)|ovary(1)|breast(1)|skin(1)	5						AGAAGAAGCACCATGACAATG	0.498													12	74					0	0	0.001855	0	0
ROR2	4920	broad.mit.edu	37	9	94486979	94486979	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr9:94486979G>A	uc004arj.1	-	9	1996	c.1797C>T	c.(1795-1797)ATC>ATT	p.I599I	ROR2_uc004ari.1_Silent_p.I459I	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	599	Cytoplasmic (Potential).|Protein kinase.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						TCCCCGCCGCGATCTGTGCCA	0.622													14	40					0	0	0.006122	0	0
RNF20	56254	broad.mit.edu	37	9	104319879	104319879	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr9:104319879G>A	uc004bbn.2	+	16	2472	c.2382_splice	c.e16+1	p.Q794_splice		NM_019592	NP_062538	Q5VTR2	BRE1A_HUMAN	ring finger protein 20						histone H2B ubiquitination|histone monoubiquitination|negative regulation of cell migration|positive regulation of transcription, DNA-dependent|protein polyubiquitination|ubiquitin-dependent protein catabolic process	nucleolus|ubiquitin ligase complex	histone binding|p53 binding|transcription coactivator activity|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|breast(1)|kidney(1)|skin(1)	8		all_hematologic(171;8.99e-06)|Acute lymphoblastic leukemia(62;0.000365)|Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.88e-19)|STAD - Stomach adenocarcinoma(157;0.00311)		GAAGACTCAGGTAATTAGGAT	0.333													7	28					0	0	0.004482	0	0
LPAR1	1902	broad.mit.edu	37	9	113704020	113704020	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr9:113704020C>T	uc004bfa.2	-	4	729	c.474G>A	c.(472-474)CGG>CGA	p.R158R	LPAR1_uc011lwm.1_Silent_p.R159R|LPAR1_uc004bfb.2_Silent_p.R158R|LPAR1_uc004bfc.2_Silent_p.R158R|LPAR1_uc011lwn.1_Silent_p.R140R|LPAR1_uc011lwo.1_Silent_p.R159R|LPAR1_uc010mub.2_Silent_p.R158R	NM_057159	NP_476500	Q92633	LPAR1_HUMAN	lysophosphatidic acid receptor 1	158	Cytoplasmic (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	cell surface|integral to plasma membrane				ovary(2)	2						GGTTGCTCATCCGTGTGTGGA	0.537													11	46					0	0	0.000978	0	0
ASTN2	23245	broad.mit.edu	37	9	119202937	119202937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr9:119202937C>T	uc004bjs.1	-	22	3834	c.3733G>A	c.(3733-3735)GAA>AAA	p.E1245K	ASTN2_uc004bjr.1_Missense_Mutation_p.E1241K|ASTN2_uc004bjt.1_Missense_Mutation_p.E1194K|ASTN2_uc004bjp.1_Missense_Mutation_p.E338K|ASTN2_uc004bjq.1_Missense_Mutation_p.E297K|ASTN2_uc011lxr.1_Missense_Mutation_p.E297K|ASTN2_uc011lxs.1_Missense_Mutation_p.E297K|ASTN2_uc011lxt.1_Missense_Mutation_p.E297K|ASTN2_uc004bjo.1_Missense_Mutation_p.E26K	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	1245	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CCAAACTTTTCATAGTGAGAG	0.512													9	56					0	0	0.006214	0	0
NR5A1	2516	broad.mit.edu	37	9	127262838	127262838	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr9:127262838G>A	uc004boo.1	-	4	588	c.401C>T	c.(400-402)CCC>CTC	p.P134L		NM_004959	NP_004950	Q13285	STF1_HUMAN	nuclear receptor subfamily 5, group A, member 1	134					cell-cell signaling|male gonad development|positive regulation of transcription from RNA polymerase II promoter|primary sex determination|regulation of steroid biosynthetic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|phospholipid binding|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding				0						GTCCGGTGCGGGAGGGGGCGG	0.711													15	26					0	0	0.004990	0	0
ANGPTL2	23452	broad.mit.edu	37	9	129870331	129870331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr9:129870331G>A	uc004bqr.1	-	2	1180	c.680C>T	c.(679-681)CCA>CTA	p.P227L	RALGPS1_uc004bqo.1_Intron|RALGPS1_uc011mab.1_Intron|RALGPS1_uc011mac.1_Intron|RALGPS1_uc004bqq.3_Intron|ANGPTL2_uc010mxg.1_Intron	NM_012098	NP_036230	Q9UKU9	ANGL2_HUMAN	angiopoietin-like 2 precursor	227					multicellular organismal development|signal transduction	extracellular space	receptor binding				0						GTAGGTGGGTGGTTGGTAGAC	0.642													21	30					0	0	0.001882	0	0
GARNL3	84253	broad.mit.edu	37	9	130111261	130111261	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr9:130111261C>T	uc011mae.1	+	17	1891	c.1490C>T	c.(1489-1491)CCC>CTC	p.P497L	GARNL3_uc011mad.1_Missense_Mutation_p.P475L	NM_032293	NP_115669	Q5VVW2	GARL3_HUMAN	GTPase activating Rap/RanGAP domain-like 3	497	CNH.				regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity|small GTPase regulator activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TGTGCAGATCCCTGGGGCCAG	0.502													12	41					0	0	0.004007	0	0
DNM1	1759	broad.mit.edu	37	9	130984795	130984795	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr9:130984795C>T	uc011mau.1	+	8	1135	c.1048C>T	c.(1048-1050)CAG>TAG	p.Q350*	DNM1_uc010mxr.2_Nonsense_Mutation_p.Q350*|DNM1_uc011mat.1_Nonsense_Mutation_p.Q350*	NM_004408	NP_004399	Q05193	DYN1_HUMAN	dynamin 1 isoform 1	350					receptor-mediated endocytosis	microtubule	GTP binding|GTPase activity			ovary(2)	2						CTCAGGAGATCAGATCGACAC	0.607													17	50					0	0	0.007413	0	0
NUP188	23511	broad.mit.edu	37	9	131761556	131761556	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr9:131761556C>T	uc004bws.1	+	33	3643	c.3621C>T	c.(3619-3621)TTC>TTT	p.F1207F	NUP188_uc004bwu.2_Silent_p.F550F	NM_015354	NP_056169	Q5SRE5	NU188_HUMAN	nucleoporin 188kDa	1207					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|kidney(1)|breast(1)	7						CCAAGGTGTTCTCAGCATTCA	0.562											OREG0003925	type=REGULATORY REGION|Gene=AK025292|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	18	43					0	0	0.007413	0	0
TMEM8C	389827	broad.mit.edu	37	9	136389886	136389886	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr9:136389886C>T	uc011mdk.1	-	1	81	c.81G>A	c.(79-81)AAG>AAA	p.K27K		NM_001080483	NP_001073952	A6NI61	TMM8C_HUMAN	transmembrane protein 8C	27						integral to membrane					0						GGAACCGCCTCTTGGCCGCGA	0.652													15	47					0	0	0.003163	0	0
SNAPC4	6621	broad.mit.edu	37	9	139273457	139273457	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr9:139273457G>A	uc004chh.2	-	21	2831	c.2822C>T	c.(2821-2823)CCA>CTA	p.P941L		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	941	Pro-rich.				snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		ACCCGGGGCTGGGCGGCCGTG	0.701													9	32					0	0	0.008291	0	0
ARSH	347527	broad.mit.edu	37	X	2933118	2933118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chrX:2933118G>A	uc011mhj.1	+	4	448	c.448G>A	c.(448-450)GAC>AAC	p.D150N		NM_001011719	NP_001011719	Q5FYA8	ARSH_HUMAN	arylsulfatase family, member H	150						integral to membrane	arylsulfatase activity|metal ion binding			lung(1)	1		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				ACTTTTAAGCGACTGCCAGGC	0.532													10	6					0	0	0.008291	0	0
MXRA5	25878	broad.mit.edu	37	X	3228297	3228297	+	Silent	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chrX:3228297G>A	uc004crg.3	-	7	8104	c.7947C>T	c.(7945-7947)ATC>ATT	p.I2649I		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2649	Ig-like C2-type 11.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CACCATTGATGATGCTGACCA	0.627													29	25					0	0	0.006320	0	0
TLR8	51311	broad.mit.edu	37	X	12939508	12939508	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chrX:12939508C>T	uc004cve.2	+	2	2417	c.2349C>T	c.(2347-2349)TTC>TTT	p.F783F	TLR8_uc004cvd.2_Silent_p.F801F	NM_138636	NP_619542	Q9NR97	TLR8_HUMAN	toll-like receptor 8 precursor	783	Extracellular (Potential).|LRRCT.				cellular response to mechanical stimulus|defense response to virus|I-kappaB kinase/NF-kappaB cascade|immunoglobulin mediated immune response|inflammatory response|innate immune response|positive regulation of innate immune response|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process	endosome membrane	DNA binding|double-stranded RNA binding|single-stranded RNA binding|transmembrane receptor activity			ovary(4)|lung(2)|large_intestine(1)	7						TTGGAGATTTCCGAAGATGGA	0.433													26	17					0	0	0.004656	0	0
RIBC1	158787	broad.mit.edu	37	X	53455528	53455528	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chrX:53455528G>A	uc004dsk.2	+	5	650	c.497G>A	c.(496-498)AGG>AAG	p.R166K	RIBC1_uc004dsj.1_Missense_Mutation_p.R166K|RIBC1_uc011mog.1_Intron	NM_001031745	NP_001026915	Q8N443	RIBC1_HUMAN	RIB43A domain with coiled-coils 1 isoform 1	166											0						AACTTGGAAAGGCAACAGCAG	0.552													10	9					0	0	0.006214	0	0
FAM120C	54954	broad.mit.edu	37	X	54185883	54185883	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chrX:54185883G>A	uc004dsz.3	-	2	949	c.866C>T	c.(865-867)ACC>ATC	p.T289I	FAM120C_uc011moh.1_Missense_Mutation_p.T289I	NM_017848	NP_060318	Q9NX05	F120C_HUMAN	hypothetical protein LOC54954	289										ovary(1)|central_nervous_system(1)	2						GAACTGGTTGGTAGTGAGGTT	0.483													16	28					0	0	0.004990	0	0
MSN	4478	broad.mit.edu	37	X	64959629	64959629	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chrX:64959629C>T	uc004dwf.2	+	13	1806	c.1608C>T	c.(1606-1608)TCC>TCT	p.S536S		NM_002444	NP_002435	P26038	MOES_HUMAN	moesin	536					leukocyte cell-cell adhesion|leukocyte migration|membrane to membrane docking	apical plasma membrane|cytoskeleton|extrinsic to membrane|microvillus membrane|nucleolus	cell adhesion molecule binding|receptor binding|structural constituent of cytoskeleton		MSN/ALK(6)	haematopoietic_and_lymphoid_tissue(6)|ovary(3)|lung(1)	10						GAGATGAGTCCAAGAAGACTG	0.522			T	ALK	ALCL								22	17					0	0	0.001882	0	0
STARD8	9754	broad.mit.edu	37	X	67938118	67938118	+	Silent	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chrX:67938118C>T	uc004dxa.2	+	5	1494	c.1122C>T	c.(1120-1122)GCC>GCT	p.A374A	STARD8_uc004dxb.2_Silent_p.A454A|STARD8_uc004dxc.3_Silent_p.A374A	NM_014725	NP_055540	Q92502	STAR8_HUMAN	StAR-related lipid transfer (START) domain	374					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion	GTPase activator activity			breast(3)|ovary(2)|pancreas(1)	6						AGTCCCCAGCCTGGGCCCAGG	0.562													7	8					0	0	0.003080	0	0
TEX11	56159	broad.mit.edu	37	X	70093151	70093151	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chrX:70093151C>T	uc004dyl.2	-	5	373	c.211G>A	c.(211-213)GAA>AAA	p.E71K	TEX11_uc004dym.2_Missense_Mutation_p.E56K	NM_001003811	NP_001003811	Q8IYF3	TEX11_HUMAN	testis expressed sequence 11 isoform 1	71							protein binding			ovary(3)|breast(1)|skin(1)	5	Renal(35;0.156)					ACTGCCATTTCTTCAATCTGG	0.358													12	16					0	0	0.001855	0	0
PHKA1	5255	broad.mit.edu	37	X	71870319	71870319	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chrX:71870319C>T	uc004eax.3	-	13	1547	c.1246_splice	c.e13-1	p.G416_splice	PHKA1_uc004eay.3_Splice_Site_p.G416_splice|PHKA1_uc011mqi.1_Splice_Site_p.G416_splice	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform						glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					CTAAAAATCCCTAAAGAAAAA	0.393													8	9					0	0	0.003080	0	0
XIST	7503	broad.mit.edu	37	X	73068856	73068856	+	RNA	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chrX:73068856G>A	uc004ebm.1	-	1		c.3733C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GTTATGCAAAGATGTTTGCAA	0.378													13	16					0	0	0.001368	0	0
ZNF711	7552	broad.mit.edu	37	X	84520196	84520196	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chrX:84520196G>A	uc004eeo.2	+	6	1198	c.851G>A	c.(850-852)CGA>CAA	p.R284Q	ZNF711_uc004eep.2_Missense_Mutation_p.R284Q|ZNF711_uc004eeq.2_Missense_Mutation_p.R284Q|ZNF711_uc011mqy.1_5'UTR	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	284					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						GACCAGAGCCGAATGCAGCGG	0.398													21	8					0	0	0.001882	0	0
COL4A5	1287	broad.mit.edu	37	X	107815064	107815064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chrX:107815064G>A	uc004enz.1	+	8	664	c.462G>A	c.(460-462)ATG>ATA	p.M154I	COL4A5_uc011mso.1_Missense_Mutation_p.M154I	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	154	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						TCCCAGGTATGAAGGTAAGCA	0.348									Alport_syndrome_with_Diffuse_Leiomyomatosis				22	13					0	0	0.002780	0	0
GPC4	2239	broad.mit.edu	37	X	132458250	132458250	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chrX:132458250T>A	uc004exc.1	-	3	846	c.634A>T	c.(634-636)ACT>TCT	p.T212S	GPC4_uc011mvg.1_Missense_Mutation_p.T142S	NM_001448	NP_001439	O75487	GPC4_HUMAN	glypican 4 precursor	212					anatomical structure morphogenesis|cell proliferation	anchored to membrane|external side of plasma membrane|extracellular space|insoluble fraction|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	Acute lymphoblastic leukemia(192;0.000127)					AAAGCACGAGTAACCTGGAGC	0.512													31	15					0	0	0.007291	0	0
PNMA3	29944	broad.mit.edu	37	X	152225782	152225782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chrX:152225782C>T	uc004fhc.2	+	2	706	c.370C>T	c.(370-372)CTC>TTC	p.L124F	PNMA5_uc004fha.3_5'Flank|PNMA3_uc004fhd.2_5'Flank	NM_013364	NP_037496	Q9UL41	PNMA3_HUMAN	paraneoplastic cancer-testis-brain antigen	124					apoptosis	nucleolus	nucleic acid binding|zinc ion binding			skin(2)|large_intestine(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					gaaccgagtcctcgggtcgga	0													12	15					0	0	0.001368	0	0
PNCK	139728	broad.mit.edu	37	X	152938025	152938026	+	Missense_Mutation	DNP	GG	AA	AA	rs139296709	byFrequency	TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chrX:152938025_152938026GG>AA	uc011myu.1	-	3	630_631	c.444_445CC>TT	c.(442-447)CTCCGT>CTTTGT	p.R149C	PNCK_uc011myt.1_Missense_Mutation_p.R83C|PNCK_uc004fia.2_Missense_Mutation_p.R78C|PNCK_uc004fhz.3_5'UTR|PNCK_uc010nuh.2_Missense_Mutation_p.R149C|PNCK_uc011myv.1_Missense_Mutation_p.R93C|PNCK_uc011myw.1_Missense_Mutation_p.R93C	NM_001039582	NP_001034671	Q6P2M8	KCC1B_HUMAN	pregnancy upregulated non-ubiquitously expressed	66	Protein kinase.					cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			breast(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GCGCACCTACGGAGCACTGCGA	0.525													22	17					0	0	0.004672	0	0
IL9R	3581	broad.mit.edu	37	X	155233493	155233493	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chrX:155233493G>A	uc004fnv.1	+	4	585	c.406G>A	c.(406-408)GAC>AAC	p.D136N	IL9R_uc010nvn.2_Missense_Mutation_p.D115N|IL9R_uc004fnu.1_Nonsense_Mutation_p.W180*	NM_002186	NP_002177	Q01113	IL9R_HUMAN	interleukin 9 receptor precursor	136	Extracellular (Potential).				cell proliferation	extracellular space|integral to plasma membrane	interleukin-9 receptor activity				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CAGCCTGGTGGACCCGGAGTA	0.622													15	26					0	0	0.006122	0	0
DIS3	22894	broad.mit.edu	37	13	73355847	73355847	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr13:73355847delC	uc001vix.3	-	1	498	c.124delG	c.(124-126)GCGfs	p.A42fs	PIBF1_uc001vja.1_5'Flank|PIBF1_uc010aeo.1_5'Flank|PIBF1_uc001vjb.2_5'Flank|PIBF1_uc001vjc.2_5'Flank|PIBF1_uc010aep.2_5'Flank|DIS3_uc001viy.3_Frame_Shift_Del_p.A42fs|DIS3_uc001viz.2_RNA	NM_014953	NP_055768	Q9Y2L1	RRP44_HUMAN	DIS3 mitotic control isoform a	42					CUT catabolic process|exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA catabolic process|rRNA processing	cytosol|exosome (RNase complex)|nucleolus|nucleoplasm	3'-5'-exoribonuclease activity|endonuclease activity|guanyl-nucleotide exchange factor activity|protein binding|RNA binding			central_nervous_system(1)	1		Breast(118;0.0074)|Acute lymphoblastic leukemia(28;0.0195)		GBM - Glioblastoma multiforme(99;0.000181)		CCCTCGTGCGCCCCTCCACAC	0.687										Multiple Myeloma(4;0.011)			2	4	---	---	---	---					
KLHL23	151230	broad.mit.edu	37	2	170591984	170591996	+	Frame_Shift_Del	DEL	CTAGAGAAGGAAT	-	-			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr2:170591984_170591996delCTAGAGAAGGAAT	uc002ufh.1	+	4	798_810	c.460_472delCTAGAGAAGGAAT	c.(460-474)CTAGAGAAGGAATCTfs	p.L154fs	KLHL23_uc002ufi.1_Frame_Shift_Del_p.L154fs	NM_144711	NP_653312	Q8NBE8	KLH23_HUMAN	kelch-like 23	154_158	BACK.										0						GTGTCCAGAACTAGAGAAGGAATCTCGAAGAAT	0.371													18	83	---	---	---	---					
KIAA1211	57482	broad.mit.edu	37	4	57180878	57180880	+	In_Frame_Del	DEL	GAG	-	-			TCGA-EE-A2A6-06A-11D-A197-08	TCGA-EE-A2A6-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b51436d-a1cb-45b8-bcf4-d43fbc2de548	ef42fde7-962c-450d-929c-e8db3a96203c	g.chr4:57180878_57180880delGAG	uc003hbk.2	+	8	1601_1603	c.1210_1212delGAG	c.(1210-1212)GAGdel	p.E407del	KIAA1211_uc010iha.2_In_Frame_Del_p.E400del|KIAA1211_uc011bzz.1_In_Frame_Del_p.E317del|KIAA1211_uc003hbm.1_In_Frame_Del_p.E293del	NM_020722	NP_065773	Q6ZU35	K1211_HUMAN	hypothetical protein LOC57482	407	Glu-rich.									ovary(1)|skin(1)	2	Glioma(25;0.08)|all_neural(26;0.101)					tctgggggaagaggaggaggagg	0.271													2	4	---	---	---	---					
