Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRDM16	63976	broad.mit.edu	37	1	3347512	3347512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:3347512G>A	uc001akf.2	+	15	3441	c.3361G>A	c.(3361-3363)GAG>AAG	p.E1121K	PRDM16_uc001akc.2_Missense_Mutation_p.E1120K|PRDM16_uc001akd.2_Missense_Mutation_p.E1120K|PRDM16_uc001ake.2_Missense_Mutation_p.E1121K|PRDM16_uc009vlh.2_Missense_Mutation_p.E821K	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	1121	Mediates interaction with SKI and regulation of TGF-beta signaling.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		cgtggaggaggaggacgacga	0.463			T	EVI1	MDS|AML								10	15					0	0	0.006214	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887274	12887274	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:12887274G>A	uc001auk.2	-	3	779	c.583C>T	c.(583-585)CAG>TAG	p.Q195*		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	195	LRR 1.										0						ACGAGCTTCTGAAGATTCCTC	0.512													173	246					0	0	0.014410	0	0
PRAMEF22	653606	broad.mit.edu	37	1	13036627	13036627	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:13036627G>A	uc009vnq.1	+	2	699	c.699G>A	c.(697-699)ATG>ATA	p.M233I	PRAMEF5_uc001aur.2_Intron	NM_001100631	NP_001094101	A3QJZ6	PRA22_HUMAN	PRAME family member 22	233											0						TGAGCCAGATGAGGAATCTTC	0.458													54	179					0	0	0.014410	0	0
NBPF1	55672	broad.mit.edu	37	1	16895731	16895732	+	Splice_Site	DNP	CC	TT	TT			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:16895731_16895732CC>TT	uc009vos.1	-	23	3339	c.2451_splice	c.e23-1	p.R817_splice	NBPF1_uc009vot.1_Splice_Site_p.R275_splice|NBPF1_uc001ayz.1_Splice_Site_p.R275_splice|NBPF1_uc010oce.1_Splice_Site_p.R546_splice	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672							cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		CCTGCAGATTCCTGATGAGCCA	0.485													16	344					0	0	0.004672	0	0
MST1P9	11223	broad.mit.edu	37	1	17087593	17087593	+	Silent	SNP	C	T	T	rs12145944	by1000genomes	TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:17087593C>T	uc010ock.1	-	2	72	c.72G>A	c.(70-72)CAG>CAA	p.Q24Q	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'Flank	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						ATGGCGAGCGCTGCCCTGCAG	0.577													6	41					0	0	0.001984	0	0
ATP13A2	23400	broad.mit.edu	37	1	17318891	17318891	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:17318891G>A	uc001baa.2	-	18	2042	c.1852C>T	c.(1852-1854)CCC>TCC	p.P618S	ATP13A2_uc001azz.1_5'Flank|ATP13A2_uc001bab.2_Missense_Mutation_p.P613S|ATP13A2_uc001bac.2_Missense_Mutation_p.P613S	NM_022089	NP_071372	Q9NQ11	AT132_HUMAN	ATPase type 13A2 isoform 1	618	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;0.000147)|Breast(348;0.00104)|Renal(390;0.00145)|Lung NSC(340;0.00566)|all_lung(284;0.00797)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|COAD - Colon adenocarcinoma(227;1.11e-05)|BRCA - Breast invasive adenocarcinoma(304;1.99e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.182)		GGCACCGGGGGCTCCTCCTGC	0.692													22	25					0	0	0.012319	0	0
PADI3	51702	broad.mit.edu	37	1	17599850	17599850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:17599850G>A	uc001bai.2	+	10	1103	c.1063G>A	c.(1063-1065)GGC>AGC	p.G355S		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	355					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	GATGGAGCTGGGCTACGTTCA	0.597													23	37					0	0	0.008361	0	0
IGSF21	84966	broad.mit.edu	37	1	18703426	18703426	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:18703426C>T	uc001bau.1	+	8	1617	c.1234C>T	c.(1234-1236)CGC>TGC	p.R412C	IGSF21_uc001bav.1_Missense_Mutation_p.R233C	NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	412	Ig-like 2.					extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		CTCCATGTATCGCTGCACCGC	0.657													12	22					0	0	0.003163	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18808428	18808428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:18808428C>T	uc001bax.2	+	1	1005	c.953C>T	c.(952-954)TCC>TTC	p.S318F	KLHDC7A_uc009vpg.2_Missense_Mutation_p.S100F	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	318						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GAGGTTCCATCCCCTAGGCCA	0.637													24	32					0	0	0.014323	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18809785	18809785	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:18809785C>T	uc001bax.2	+	1	2362	c.2310C>T	c.(2308-2310)CCC>CCT	p.P770P	KLHDC7A_uc009vpg.2_Intron	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	770						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		TGCCCACCCCCGATTTGCCTC	0.657													18	80					0	0	0.008871	0	0
UBXN10	127733	broad.mit.edu	37	1	20517764	20517764	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:20517764G>A	uc001bdb.2	+	2	794	c.710G>A	c.(709-711)CGA>CAA	p.R237Q		NM_152376	NP_689589	Q96LJ8	UBX10_HUMAN	UBX domain protein 10	237	UBX.									ovary(1)	1						ACCTCCTACCGACACTGCAGC	0.502													48	50					0	0	0.013114	0	0
EPHB2	2048	broad.mit.edu	37	1	23239072	23239072	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:23239072C>T	uc009vqj.1	+	15	2977	c.2832C>T	c.(2830-2832)GTC>GTT	p.V944V	EPHB2_uc001bge.2_Silent_p.V945V|EPHB2_uc001bgf.2_Silent_p.V944V|EPHB2_uc010odu.1_Silent_p.V886V	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	944	Cytoplasmic (Potential).|SAM.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity	p.V944V(1)		ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		CCTTTGACGTCGTGTCTCAGA	0.577									Hereditary_Prostate_Cancer				26	41					0	0	0.006320	0	0
LUZP1	7798	broad.mit.edu	37	1	23417786	23417786	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:23417786G>A	uc001bgk.2	-	4	3353	c.2969C>T	c.(2968-2970)TCC>TTC	p.S990F	LUZP1_uc010odv.1_Missense_Mutation_p.S990F|LUZP1_uc001bgl.2_Missense_Mutation_p.S990F|LUZP1_uc001bgm.1_Missense_Mutation_p.S990F	NM_033631	NP_361013	Q86V48	LUZP1_HUMAN	leucine zipper protein 1	990						nucleus					0		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Ovarian(437;0.00373)|Breast(348;0.00815)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;4.88e-27)|Colorectal(126;8.36e-08)|COAD - Colon adenocarcinoma(152;4.31e-06)|GBM - Glioblastoma multiforme(114;8.64e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00112)|KIRC - Kidney renal clear cell carcinoma(1967;0.00176)|STAD - Stomach adenocarcinoma(196;0.0146)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.0967)|LUSC - Lung squamous cell carcinoma(448;0.199)		GGTCCTTCTGGAGGAGGGCTC	0.577													16	29					0	0	0.004007	0	0
TCEA3	6920	broad.mit.edu	37	1	23724446	23724446	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:23724446G>A	uc001bgx.1	-	6	581	c.446C>T	c.(445-447)TCA>TTA	p.S149L	TCEA3_uc009vqn.1_Missense_Mutation_p.S128L	NM_003196	NP_003187	O75764	TCEA3_HUMAN	transcription elongation factor A (SII), 3	149	Ser-rich.				regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription elongation, DNA-dependent	nucleus	DNA binding|translation elongation factor activity|zinc ion binding				0		Colorectal(325;3.46e-05)|Lung NSC(340;4.16e-05)|all_lung(284;6.68e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.0054)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.6e-25)|Colorectal(126;8.32e-08)|COAD - Colon adenocarcinoma(152;4.29e-06)|GBM - Glioblastoma multiforme(114;9e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00112)|KIRC - Kidney renal clear cell carcinoma(1967;0.00424)|STAD - Stomach adenocarcinoma(196;0.0145)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.0963)|LUSC - Lung squamous cell carcinoma(448;0.198)		GCTGCTGTTTGATCTGAGGAT	0.358													12	19					0	0	0.001855	0	0
SRRM1	10250	broad.mit.edu	37	1	24989168	24989168	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:24989168T>C	uc001bjm.2	+	12	1725	c.1501T>C	c.(1501-1503)TCC>CCC	p.S501P	SRRM1_uc010oel.1_Missense_Mutation_p.S499P|SRRM1_uc009vrh.1_Missense_Mutation_p.S460P|SRRM1_uc009vri.1_Missense_Mutation_p.S416P|SRRM1_uc010oem.1_RNA	NM_005839	NP_005830	Q8IYB3	SRRM1_HUMAN	serine/arginine repetitive matrix 1	501	Necessary for speckles and matrix localization.|Arg-rich.|Ser-rich.				mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|nuclear matrix|nuclear speck	DNA binding|protein binding|RNA binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000946)|all_lung(284;0.00125)|Ovarian(437;0.00764)|Breast(348;0.0148)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0422)|OV - Ovarian serous cystadenocarcinoma(117;1.01e-24)|Colorectal(126;5.95e-08)|COAD - Colon adenocarcinoma(152;3.24e-06)|GBM - Glioblastoma multiforme(114;0.000148)|BRCA - Breast invasive adenocarcinoma(304;0.00177)|KIRC - Kidney renal clear cell carcinoma(1967;0.00348)|STAD - Stomach adenocarcinoma(196;0.00483)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.138)		CTCCTCCTCCTCCTCAGAAGA	0.458													16	27					0	0	0.004990	0	0
AIM1L	55057	broad.mit.edu	37	1	26669298	26669299	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:26669298_26669299GG>AA	uc001bmd.3	-	4	445_446	c.15_16CC>TT	c.(13-18)ACCCCA>ACTTCA	p.P6S		NM_001039775	NP_001034864	Q8N1P7	AIM1L_HUMAN	absent in melanoma 1-like	6							sugar binding			pancreas(1)	1		all_cancers(24;4.67e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.51e-27)|Colorectal(126;1.61e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000792)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|STAD - Stomach adenocarcinoma(196;0.00154)|GBM - Glioblastoma multiforme(114;0.00858)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.165)|LUSC - Lung squamous cell carcinoma(448;0.239)		TTTGTCCCTGGGGTTCTGAGTT	0.584													69	109					0	0	0.004672	0	0
COL16A1	1307	broad.mit.edu	37	1	32155398	32155398	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:32155398C>T	uc001btk.1	-	23	1929	c.1564G>A	c.(1564-1566)GGA>AGA	p.G522R	COL16A1_uc001btj.1_Missense_Mutation_p.G351R|COL16A1_uc001btl.3_Missense_Mutation_p.G522R	NM_001856	NP_001847	Q07092	COGA1_HUMAN	alpha 1 type XVI collagen precursor	522	Triple-helical region 8 (COL8) with 1 imperfection.				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			ovary(8)	8		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		CCAGGAAGTCCAACAAAGTTC	0.597													18	89					0	0	0.012319	0	0
GJB3	2707	broad.mit.edu	37	1	35250783	35250783	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:35250783C>T	uc001bxx.2	+	2	1035	c.420C>T	c.(418-420)ATC>ATT	p.I140I	GJB3_uc001bxy.2_Silent_p.I140I|GJB3_uc001bxz.3_Silent_p.I140I|uc010ohs.1_Intron	NM_024009	NP_076872	O75712	CXB3_HUMAN	connexin 31	140	Helical; (Potential).				cell communication	connexon complex|integral to membrane	gap junction channel activity				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				TCAAGCTCATCATTGAGTTCC	0.582													54	66					0	0	0.014410	0	0
ZMYM4	9202	broad.mit.edu	37	1	35824978	35824978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:35824978G>A	uc001byt.2	+	3	618	c.538G>A	c.(538-540)GAA>AAA	p.E180K	ZMYM4_uc009vuu.2_Missense_Mutation_p.E148K|ZMYM4_uc001byu.2_Intron|ZMYM4_uc009vuv.2_5'UTR	NM_005095	NP_005086	Q5VZL5	ZMYM4_HUMAN	zinc finger protein 262	180					multicellular organismal development		DNA binding|zinc ion binding			large_intestine(2)|ovary(1)|kidney(1)|skin(1)	5		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TTATGAACGTGAAAAACGGTT	0.323													9	27					0	0	0.006214	0	0
LSM10	84967	broad.mit.edu	37	1	36859377	36859377	+	Silent	SNP	G	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:36859377G>C	uc001cao.1	-	2	504	c.354C>G	c.(352-354)CCC>CCG	p.P118P		NM_032881	NP_116270	Q969L4	LSM10_HUMAN	LSM10, U7 small nuclear RNA associated	118					histone mRNA metabolic process|mRNA processing|RNA splicing|S phase of mitotic cell cycle|termination of RNA polymerase II transcription	Cajal body|U7 snRNP	histone pre-mRNA DCP binding|protein binding				0		Myeloproliferative disorder(586;0.0393)				AGTTTTTTGGGGGAAATTCCC	0.572													30	74					0	0	0.010818	0	0
TRIT1	54802	broad.mit.edu	37	1	40315913	40315913	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:40315913T>C	uc010oiz.1	-	5	595	c.581A>G	c.(580-582)GAA>GGA	p.E194G	TRIT1_uc001cec.3_RNA|TRIT1_uc001ced.3_5'UTR|TRIT1_uc001cee.3_RNA|TRIT1_uc001cef.3_RNA|TRIT1_uc001ceg.3_5'UTR|TRIT1_uc001ceh.3_5'UTR|TRIT1_uc009vvv.2_Missense_Mutation_p.E53G|TRIT1_uc001cei.3_5'UTR|TRIT1_uc001ceq.2_5'UTR|TRIT1_uc001cek.2_Intron|TRIT1_uc009vvx.2_Intron|TRIT1_uc001cel.2_Intron|TRIT1_uc001cem.2_Missense_Mutation_p.E114G|TRIT1_uc001cen.2_5'UTR|TRIT1_uc001ceo.2_5'UTR|TRIT1_uc001cep.2_Intron	NM_017646	NP_060116	Q9H3H1	MOD5_HUMAN	tRNA isopentenyltransferase 1 precursor	194					tRNA processing	mitochondrion	ATP binding|metal ion binding|tRNA dimethylallyltransferase activity			ovary(1)	1	all_cancers(7;4.55e-14)|all_lung(5;1.23e-16)|all_epithelial(6;2.17e-16)|Lung NSC(20;7.03e-07)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;3.29e-18)|Epithelial(16;3.07e-17)|all cancers(16;6.21e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			GATTCCTGTTTCTTCAAAAAC	0.423													12	35					0	0	0.004007	0	0
RIMKLA	284716	broad.mit.edu	37	1	42880258	42880258	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:42880258C>T	uc001chi.2	+	5	927	c.789C>T	c.(787-789)ATC>ATT	p.I263I		NM_173642	NP_775913	Q8IXN7	RIMKA_HUMAN	ribosomal modification protein rimK-like family	263	ATP-grasp.				protein modification process	cytoplasm	acid-amino acid ligase activity|ATP binding|metal ion binding				0						ATCTCCTTATCATGGACGATG	0.512													142	180					0	0	0.014410	0	0
WDR65	149465	broad.mit.edu	37	1	43647397	43647397	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:43647397C>T	uc001cip.1	+	3	471	c.350C>T	c.(349-351)CCA>CTA	p.P117L	EBNA1BP2_uc001cio.2_Intron|WDR65_uc010ojz.1_Missense_Mutation_p.P106L|WDR65_uc001ciq.1_Missense_Mutation_p.P117L	NM_152498	NP_689711	Q96MR6	WDR65_HUMAN	WD repeat domain 65	117	WD 1.									skin(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GCTTTTTCTCCAGACTCCAAA	0.403													30	67					0	0	0.007291	0	0
MKNK1	8569	broad.mit.edu	37	1	47027158	47027158	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:47027158C>T	uc001cqb.2	-	12	1364	c.1120G>A	c.(1120-1122)GTG>ATG	p.V374M	MKNK1_uc010omd.1_Missense_Mutation_p.V238M|MKNK1_uc001cqc.2_Missense_Mutation_p.V333M|MKNK1_uc009vyi.2_Missense_Mutation_p.V333M|MKNK1_uc010ome.1_Missense_Mutation_p.V238M|MKNK1_uc009vyj.2_3'UTR	NM_003684	NP_003675	Q9BUB5	MKNK1_HUMAN	MAP kinase-interacting serine/threonine kinase 1	374	Protein kinase.				intracellular protein kinase cascade|peptidyl-serine phosphorylation|regulation of translation	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)	2	Acute lymphoblastic leukemia(166;0.155)					ACCCCCTGCACCCATGGGTGC	0.587													11	19					0	0	0.010729	0	0
ACOT11	26027	broad.mit.edu	37	1	55063070	55063070	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:55063070T>G	uc001cxm.1	+	7	828	c.746T>G	c.(745-747)GTG>GGG	p.V249G	ACOT11_uc001cxj.1_Missense_Mutation_p.V127G|ACOT11_uc001cxk.2_Missense_Mutation_p.V215G|ACOT11_uc001cxl.1_Missense_Mutation_p.V249G	NM_015547	NP_056362	Q8WXI4	ACO11_HUMAN	thioesterase, adipose associated isoform BFIT1	249	Acyl coenzyme A hydrolase 2.				fatty acid metabolic process|intracellular signal transduction|response to cold		acyl-CoA thioesterase activity|carboxylesterase activity			central_nervous_system(1)	1						ATGGAGAATGTGGCCACCATT	0.632													8	9					0	0	0.004482	0	0
LEPR	3953	broad.mit.edu	37	1	66067139	66067139	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:66067139C>T	uc001dci.2	+	9	1261	c.1059C>T	c.(1057-1059)ATC>ATT	p.I353I	LEPR_uc001dcg.2_Silent_p.I353I|LEPR_uc001dch.2_Silent_p.I353I|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Silent_p.I353I|LEPR_uc001dck.2_Silent_p.I353I	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	353	Extracellular (Potential).|Ig-like.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		TTCACTGCATCTATAAGAAGG	0.363													37	24					0	0	0.005524	0	0
RPE65	6121	broad.mit.edu	37	1	68910336	68910336	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:68910336C>T	uc001dei.1	-	5	427	c.373G>A	c.(373-375)GGA>AGA	p.G125R		NM_000329	NP_000320	Q16518	RPE65_HUMAN	retinal pigment epithelium-specific protein	125					visual perception	cytoplasm|plasma membrane	all-trans-retinyl-palmitate hydrolase activity|metal ion binding|retinol isomerase activity			ovary(1)	1						ACCTCTACTCCTCGAAAGTAA	0.363													25	26					0	0	0.003330	0	0
ELTD1	64123	broad.mit.edu	37	1	79392644	79392644	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:79392644G>A	uc001diq.3	-	8	1166	c.1010C>T	c.(1009-1011)TCA>TTA	p.S337L		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	337	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		CATTGAGACTGAAATTACTGA	0.333													12	31					0	0	0.013537	0	0
LPHN2	23266	broad.mit.edu	37	1	82408712	82408712	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:82408712G>A	uc001dit.3	+	6	638	c.457G>A	c.(457-459)GAA>AAA	p.E153K	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.E153K|LPHN2_uc001div.2_Missense_Mutation_p.E153K|LPHN2_uc009wcd.2_Missense_Mutation_p.E153K	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	153	Extracellular (Potential).|Olfactomedin-like.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		ATATGAAGCTGAACAAAAGGC	0.403													40	46					0	0	0.007835	0	0
LPAR3	23566	broad.mit.edu	37	1	85331271	85331271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:85331271G>A	uc001dkl.2	-	1	572	c.533C>T	c.(532-534)TCC>TTC	p.S178F	LPAR3_uc009wcj.1_Missense_Mutation_p.S178F	NM_012152	NP_036284	Q9UBY5	LPAR3_HUMAN	lysophosphatidic acid receptor 3	178	Extracellular (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane|intracellular membrane-bounded organelle				lung(3)|ovary(2)	5						GGGGGCCAGGGAAGAGCAGGC	0.542													46	33					0	0	0.009718	0	0
COL24A1	255631	broad.mit.edu	37	1	86591026	86591026	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:86591026C>T	uc001dlj.2	-	3	1035	c.993G>A	c.(991-993)GGG>GGA	p.G331G	COL24A1_uc010osd.1_5'UTR|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA|COL24A1_uc009wcq.2_Silent_p.G331G	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	331					cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		TGGCCTGAATCCCATGGTTTG	0.418													12	43					0	0	0.010729	0	0
DNTTIP2	30836	broad.mit.edu	37	1	94337681	94337681	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:94337681G>A	uc001dqf.2	-	5	2052	c.2014C>T	c.(2014-2016)CCG>TCG	p.P672S	DNTTIP2_uc010otm.1_RNA	NM_014597	NP_055412	Q5QJE6	TDIF2_HUMAN	deoxynucleotidyltransferase, terminal,	672					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0		all_lung(203;0.0111)|Lung NSC(277;0.0347)		all cancers(265;0.00679)|GBM - Glioblastoma multiforme(16;0.0278)|Epithelial(280;0.128)		AATCTTTTCGGGTCCATGCTG	0.398													51	194					0	0	0.014410	0	0
ABCA4	24	broad.mit.edu	37	1	94474331	94474331	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:94474331G>A	uc001dqh.2	-	41	5915	c.5811C>T	c.(5809-5811)ATC>ATT	p.I1937I	ABCA4_uc001dqi.1_Silent_p.I56I	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	1937	Cytoplasmic.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		GTAGCCTTAAGATGTCAGTTT	0.423													26	91					0	0	0.007291	0	0
DPYD	1806	broad.mit.edu	37	1	98187204	98187204	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:98187204C>T	uc001drv.2	-	5	482	c.345G>A	c.(343-345)ATG>ATA	p.M115I	DPYD_uc010oub.1_RNA|DPYD_uc001drw.2_Missense_Mutation_p.M115I	NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	115					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	CAGAAAATATCATCTTAGCAG	0.333													16	53					0	0	0.004990	0	0
COL11A1	1301	broad.mit.edu	37	1	103388915	103388915	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:103388915C>T	uc001dul.2	-	47	3949	c.3631G>A	c.(3631-3633)GAA>AAA	p.E1211K	COL11A1_uc001duk.2_Missense_Mutation_p.E407K|COL11A1_uc001dum.2_Missense_Mutation_p.E1223K|COL11A1_uc001dun.2_Missense_Mutation_p.E1172K|COL11A1_uc009weh.2_Missense_Mutation_p.E1095K	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1211	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TCCCCATTTTCACCTTTTTCA	0.343													4	8					0	0	0.009096	0	0
RNPC3	55599	broad.mit.edu	37	1	104093653	104093653	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:104093653G>A	uc010oul.1	+	13	1567	c.1452G>A	c.(1450-1452)AAG>AAA	p.K484K	RNPC3_uc010oum.1_Silent_p.K483K|RNPC3_uc010oun.1_Silent_p.K484K|AMY2B_uc010ouo.1_RNA	NM_017619	NP_060089	Q96LT9	RBM40_HUMAN	RNA-binding region (RNP1, RRM) containing 3	484	RRM 2.				mRNA processing	U12-type spliceosomal complex	nucleotide binding|protein binding|RNA binding				0		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Lung(183;0.111)|Epithelial(280;0.122)|all cancers(265;0.125)|Colorectal(144;0.163)		AAGCCTTAAAGGAAGCTAATG	0.338													8	28					0	0	0.003080	0	0
DDX20	11218	broad.mit.edu	37	1	112308368	112308368	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:112308368C>T	uc001ebs.2	+	11	1679	c.1322C>T	c.(1321-1323)CCT>CTT	p.P441L	DDX20_uc010owf.1_Missense_Mutation_p.P203L|DDX20_uc001ebt.2_Missense_Mutation_p.P49L	NM_007204	NP_009135	Q9UHI6	DDX20_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	441	Helicase C-terminal.				assembly of spliceosomal tri-snRNP|ncRNA metabolic process	Cajal body|cytoskeleton|cytosol|spliceosomal complex	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding			lung(1)|kidney(1)	2		all_cancers(81;1.06e-05)|all_epithelial(167;7.36e-06)|all_lung(203;2.44e-05)|Lung NSC(69;4.15e-05)		Lung(183;0.0234)|Colorectal(144;0.0282)|all cancers(265;0.0614)|Epithelial(280;0.0999)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GATCCCATTCCTTCTGGTCTG	0.353													37	87					0	0	0.005524	0	0
MAGI3	260425	broad.mit.edu	37	1	114165440	114165440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:114165440C>T	uc001edk.2	+	9	1365	c.1184C>T	c.(1183-1185)TCA>TTA	p.S395L	MAGI3_uc001edh.3_Missense_Mutation_p.S420L|MAGI3_uc001edi.3_Missense_Mutation_p.S395L|MAGI3_uc010owm.1_Missense_Mutation_p.S420L|MAGI3_uc001edj.2_Missense_Mutation_p.S116L	NM_001142782	NP_001136254	Q5TCQ9	MAGI3_HUMAN	membrane-associated guanylate kinase-related  3	420					apoptosis|interspecies interaction between organisms|intracellular signal transduction	nucleus|tight junction	ATP binding|guanylate kinase activity|protein binding			lung(3)|ovary(2)|central_nervous_system(1)	6	Lung SC(450;0.184)	all_cancers(81;2.34e-09)|all_epithelial(167;7.41e-09)|all_lung(203;7.13e-06)|Lung NSC(69;1.2e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		ATGGAAAAATCACACTTCACA	0.343													13	34					0	0	0.004990	0	0
BCL2L15	440603	broad.mit.edu	37	1	114424487	114424487	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:114424487G>A	uc001edw.2	-	3	554	c.382C>T	c.(382-384)CCT>TCT	p.P128S	uc001edv.1_Intron|BCL2L15_uc001edx.2_Intron|BCL2L15_uc001edy.2_Intron|BCL2L15_uc001edz.1_RNA	NM_001010922	NP_001010922	Q5TBC7	B2L15_HUMAN	pro-apoptotic Bcl-2 protein	128					apoptosis					ovary(1)	1	Lung SC(450;0.184)	all_cancers(81;3.95e-08)|all_epithelial(167;9.95e-08)|all_lung(203;1.31e-05)|Lung NSC(69;2.46e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACTACTTCAGGAGCAATGTGA	0.512													15	20					0	0	0.006122	0	0
DENND2C	163259	broad.mit.edu	37	1	115079237	115079237	+	RNA	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:115079237G>A	uc001eez.2	-	29		c.4406C>T				NM_198459		Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C											skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CAGCAAGAAGGGTGTGAACCT	0.542													16	39					0	0	0.003163	0	0
SYCP1	6847	broad.mit.edu	37	1	115537360	115537360	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:115537360G>A	uc001efr.2	+	31	2954	c.2745G>A	c.(2743-2745)AGG>AGA	p.R915R	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Silent_p.R915R|SYCP1_uc009wgw.2_Silent_p.R890R	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	915					cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CACTGTATAGGAACAATAATC	0.279													16	12					0	0	0.006122	0	0
SPAG17	200162	broad.mit.edu	37	1	118570995	118570995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:118570995G>A	uc001ehk.2	-	26	3700	c.3632C>T	c.(3631-3633)CCT>CTT	p.P1211L		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1211						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TTGTAAAACAGGTTCTGGTTC	0.398													35	67					0	0	0.005524	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144863441	144863441	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:144863441G>A	uc001elw.3	-	37	6253	c.5962C>T	c.(5962-5964)CTG>TTG	p.L1988L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Silent_p.L1882L|PDE4DIP_uc001elv.3_Silent_p.L995L|PDE4DIP_uc001ema.2_3'UTR	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1988	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TTGTGCTGCAGTCTGACCAGG	0.527			T	PDGFRB	MPD								57	224					0	0	0.014410	0	0
NOTCH2NL	388677	broad.mit.edu	37	1	145281530	145281530	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:145281530C>T	uc001emn.3	+	4	830	c.460C>T	c.(460-462)CAG>TAG	p.Q154*	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_5'UTR|NOTCH2NL_uc001emm.3_Nonsense_Mutation_p.Q154*|NOTCH2NL_uc001emo.2_Nonsense_Mutation_p.Q154*|NOTCH2NL_uc010oyh.1_RNA	NM_203458	NP_982283	Q7Z3S9	NT2NL_HUMAN	Notch homolog 2 N-terminal like protein	154	EGF-like 5; calcium-binding (Potential).				cell differentiation|multicellular organismal development|Notch signaling pathway	cytoplasm|extracellular region	calcium ion binding			ovary(1)	1						AGGACACTGCCAGCATGGTGG	0.562													88	831					0	0	0.014410	0	0
NBPF10	100132406	broad.mit.edu	37	1	145360584	145360584	+	Missense_Mutation	SNP	G	A	A	rs78186669		TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:145360584G>A	uc001end.3	+	76	9469	c.9434G>A	c.(9433-9435)GGG>GAG	p.G3145E	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron|NBPF10_uc001enc.2_Intron|NBPF10_uc010oyq.1_Intron|NBPF10_uc010oyr.1_Missense_Mutation_p.G443E	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3070											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		GATGAGAAAGGGCCTGAAGTC	0.483													5	74					0	0	0.001984	0	0
NBPF10	100132406	broad.mit.edu	37	1	145360608	145360608	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:145360608T>A	uc001end.3	+	76	9493	c.9458T>A	c.(9457-9459)CTG>CAG	p.L3153Q	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron|NBPF10_uc001enc.2_Intron|NBPF10_uc010oyq.1_Intron|NBPF10_uc010oyr.1_Missense_Mutation_p.L451Q	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3078											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		CAGGACTCACTGGATAGATGT	0.478													9	43					0	0	0.010729	0	0
TCHH	7062	broad.mit.edu	37	1	152085190	152085190	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:152085190C>G	uc001ezp.2	-	2	503	c.503G>C	c.(502-504)CGC>CCC	p.R168P	TCHH_uc009wne.1_Missense_Mutation_p.R168P	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	168					keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTCGTCGCGGCGCTGCCTGTC	0.587													38	198					0	0	0.010771	0	0
HRNR	388697	broad.mit.edu	37	1	152188193	152188193	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:152188193G>A	uc001ezt.1	-	3	5988	c.5912C>T	c.(5911-5913)TCA>TTA	p.S1971L		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1971	22.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGACCACCCTGAGCCAGACCC	0.607													27	710					0	0	0.008361	0	0
HRNR	388697	broad.mit.edu	37	1	152190845	152190845	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:152190845G>A	uc001ezt.1	-	3	3336	c.3260C>T	c.(3259-3261)TCG>TTG	p.S1087L		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1087	12.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCCACAGCTCGATGACTGTCC	0.562													166	266					0	0	0.014410	0	0
FLG	2312	broad.mit.edu	37	1	152275690	152275690	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:152275690G>A	uc001ezu.1	-	3	11708	c.11672C>T	c.(11671-11673)TCT>TTT	p.S3891F		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3891	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGCTCCCGAGAAGATCCATG	0.547									Ichthyosis				33	64					0	0	0.013726	0	0
FLG	2312	broad.mit.edu	37	1	152275800	152275800	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:152275800C>T	uc001ezu.1	-	3	11598	c.11562G>A	c.(11560-11562)AGG>AGA	p.R3854R		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3854	Filaggrin 23.|Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCCTGCTTCTCCTGGACCCCG	0.592									Ichthyosis				83	216					0	0	0.014410	0	0
FLG2	388698	broad.mit.edu	37	1	152324245	152324245	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:152324245C>T	uc001ezw.3	-	3	6090	c.6017G>A	c.(6016-6018)AGA>AAA	p.R2006K	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2006	Filaggrin 9.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTGGCCATGTCTAGTGGTATC	0.527													148	256					0	0	0.014410	0	0
PYGO2	90780	broad.mit.edu	37	1	154932091	154932091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:154932091G>A	uc001fft.2	-	3	591	c.385C>T	c.(385-387)CTC>TTC	p.L129F		NM_138300	NP_612157	Q9BRQ0	PYGO2_HUMAN	pygopus homolog 2	129	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding|zinc ion binding			skin(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TGTCGACGGAGTGGCTGGGGG	0.672													45	35					0	0	0.011902	0	0
THBS3	7059	broad.mit.edu	37	1	155172680	155172680	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:155172680C>T	uc001fix.2	-	8	903	c.880G>A	c.(880-882)GAG>AAG	p.E294K	RAG1AP1_uc010pey.1_Intron|THBS3_uc009wqi.2_Missense_Mutation_p.E285K|THBS3_uc001fiz.2_Missense_Mutation_p.E294K|THBS3_uc001fiy.2_5'UTR|THBS3_uc010pfu.1_Missense_Mutation_p.E174K|THBS3_uc010pfv.1_RNA|THBS3_uc001fja.2_RNA	NM_007112	NP_009043	P49746	TSP3_HUMAN	thrombospondin 3 precursor	294	EGF-like 1.				cell-matrix adhesion	extracellular region|perinuclear region of cytoplasm	calcium ion binding|heparin binding|structural molecule activity			breast(3)|ovary(2)	5	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			CCTGGGTACTCGTACACTTCC	0.627													33	54					0	0	0.009535	0	0
NES	10763	broad.mit.edu	37	1	156641393	156641393	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:156641393G>A	uc001fpq.2	-	4	2720	c.2587C>T	c.(2587-2589)CTA>TTA	p.L863L		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	863	Tail.			QGAMNPLEKEIQEPLESVEVNQETFRLLEEENQESLRSLGA WNLENLRSPEE -> KSGGNESSRKGNSRTTGVCGSEPRDI QTPGRGESGIIEISGSMEPGEFEISRG (in Ref. 1; CAA46780).	brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TCCTTTTCTAGAGGATTCATT	0.458													22	122					0	0	0.012319	0	0
NES	10763	broad.mit.edu	37	1	156641395	156641395	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:156641395G>A	uc001fpq.2	-	4	2718	c.2585C>T	c.(2584-2586)CCT>CTT	p.P862L		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	862	Tail.			QGAMNPLEKEIQEPLESVEVNQETFRLLEEENQESLRSLGA WNLENLRSPEE -> KSGGNESSRKGNSRTTGVCGSEPRDI QTPGRGESGIIEISGSMEPGEFEISRG (in Ref. 1; CAA46780).	brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CTTTTCTAGAGGATTCATTGC	0.453													78	72					0	0	0.014410	0	0
FCRL1	115350	broad.mit.edu	37	1	157771858	157771858	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:157771858C>T	uc001frg.2	-	5	846	c.733G>A	c.(733-735)GAG>AAG	p.E245K	FCRL1_uc001frf.2_RNA|FCRL1_uc001frh.2_Missense_Mutation_p.E245K|FCRL1_uc001fri.2_Missense_Mutation_p.E245K|FCRL1_uc001frj.2_RNA	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	245	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			GTGATATCCTCGTGATAAAAC	0.592													35	46					0	0	0.004878	0	0
OR6K6	128371	broad.mit.edu	37	1	158725527	158725527	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:158725527C>T	uc001fsw.1	+	1	922	c.922C>T	c.(922-924)CTT>TTT	p.L308F		NM_001005184	NP_001005184	Q8NGW6	OR6K6_HUMAN	olfactory receptor, family 6, subfamily K,	308	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_hematologic(112;0.0378)					TTTTGTTATCCTTGCTCCCTT	0.443													67	57					0	0	0.014410	0	0
OR6N1	128372	broad.mit.edu	37	1	158736272	158736272	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:158736272G>A	uc010piq.1	-	1	201	c.201C>T	c.(199-201)TCC>TCT	p.S67S		NM_001005185	NP_001005185	Q8NGY5	OR6N1_HUMAN	olfactory receptor, family 6, subfamily N,	67	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GCTCTGAGAAGGAGAGAATGC	0.498													26	83					0	0	0.007291	0	0
FCRL6	343413	broad.mit.edu	37	1	159779367	159779367	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:159779367C>T	uc001fud.3	+	5	822	c.780C>T	c.(778-780)TCC>TCT	p.S260S	FCRL6_uc001fuc.2_Silent_p.S267S|FCRL6_uc009wsz.1_Silent_p.S165S|FCRL6_uc009wta.2_Silent_p.S260S	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	260	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					GAACCACCTCCCTCCTCTTCC	0.557													18	48					0	0	0.007413	0	0
IGSF9	57549	broad.mit.edu	37	1	159900975	159900975	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:159900975G>A	uc001fur.2	-	13	1788	c.1590C>T	c.(1588-1590)GGC>GGT	p.G530G	IGSF9_uc001fuq.2_Silent_p.G514G|IGSF9_uc001fup.2_5'UTR	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	530	Fibronectin type-III 1.|Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			CACCATCAAAGCCAGGCTCCC	0.552													21	10					0	0	0.010504	0	0
LY9	4063	broad.mit.edu	37	1	160783515	160783515	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:160783515G>A	uc001fwu.2	+	3	594	c.544G>A	c.(544-546)GGG>AGG	p.G182R	LY9_uc010pjs.1_Missense_Mutation_p.G182R|LY9_uc001fwv.2_Missense_Mutation_p.G182R|LY9_uc001fww.2_Missense_Mutation_p.G182R|LY9_uc001fwx.2_Missense_Mutation_p.G182R|LY9_uc001fwy.1_Missense_Mutation_p.G84R|LY9_uc001fwz.2_5'Flank	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	182	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			CTCCGTGAAGGGGGCAGAGAA	0.532													31	87					0	0	0.012213	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161018580	161018580	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:161018580T>C	uc001fxl.2	-	12	2577	c.2231A>G	c.(2230-2232)GAT>GGT	p.D744G	USF1_uc001fxi.2_5'Flank|USF1_uc001fxj.2_5'Flank|ARHGAP30_uc001fxk.2_Intron|ARHGAP30_uc001fxm.2_Missense_Mutation_p.D590G|ARHGAP30_uc009wtx.2_Missense_Mutation_p.D417G	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	744	Glu-rich.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			TTCCTTCTCATCTGTATACTC	0.488													52	204					0	0	0.014410	0	0
SELP	6403	broad.mit.edu	37	1	169578921	169578921	+	Missense_Mutation	SNP	G	A	A	rs3917742	byFrequency	TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:169578921G>A	uc001ggi.3	-	8	1219	c.1154C>T	c.(1153-1155)TCG>TTG	p.S385L	SELP_uc001ggh.2_Missense_Mutation_p.S220L|SELP_uc009wvr.2_Missense_Mutation_p.S385L	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	385	Sushi 4.|Extracellular (Potential).				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	CGGCTCACACGAAATAGCTAA	0.478													23	14					0	0	0.002780	0	0
BAT2L2	23215	broad.mit.edu	37	1	171509388	171509388	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:171509388C>T	uc010pmg.1	+	16	3043	c.2777C>T	c.(2776-2778)TCC>TTC	p.S926F	BAT2L2_uc010pmh.1_5'UTR	NM_015172	NP_055987	Q9Y520	PRC2C_HUMAN	HBxAg transactivated protein 2	926							protein C-terminus binding				0						AGAAGTGTTTCCCATGGATCT	0.453													5	44					0	0	0.001168	0	0
MYOC	4653	broad.mit.edu	37	1	171605430	171605430	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:171605430C>T	uc001ghu.2	-	3	1172	c.1150G>A	c.(1150-1152)GAT>AAT	p.D384N	MYOC_uc010pmk.1_Missense_Mutation_p.D326N	NM_000261	NP_000252	Q99972	MYOC_HUMAN	myocilin precursor	384	Olfactomedin-like.				anatomical structure morphogenesis	cilium|extracellular space|rough endoplasmic reticulum	structural molecule activity			lung(1)	1	all_cancers(6;5.47e-10)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					CCTGCTTCATCCACAGCCAAG	0.532													26	60					0	0	0.003954	0	0
SLC9A11	284525	broad.mit.edu	37	1	173486750	173486750	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:173486750C>T	uc001giz.2	-	23	3256	c.2833G>A	c.(2833-2835)GAC>AAC	p.D945N	SLC9A11_uc009wwe.2_Missense_Mutation_p.D503N	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	945	cNMP.				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						CCAATTATGTCCCCAGTAGTA	0.398													29	127					0	0	0.007291	0	0
TNR	7143	broad.mit.edu	37	1	175375715	175375715	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:175375715C>T	uc001gkp.1	-	1	217	c.136G>A	c.(136-138)GAG>AAG	p.E46K	TNR_uc009wwu.1_Missense_Mutation_p.E46K|TNR_uc010pmz.1_Missense_Mutation_p.E46K	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	46					axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CCCTCCTCCTCCACTGACTGT	0.527													98	61					0	0	0.014410	0	0
TNR	7143	broad.mit.edu	37	1	175375835	175375835	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:175375835C>T	uc001gkp.1	-	1	97	c.16G>A	c.(16-18)GAA>AAA	p.E6K	TNR_uc009wwu.1_Missense_Mutation_p.E6K|TNR_uc010pmz.1_Missense_Mutation_p.E6K	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	6					axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					ACCACTGTTTCCCCATCTGCC	0.532													55	32					0	0	0.014410	0	0
PAPPA2	60676	broad.mit.edu	37	1	176675538	176675538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:176675538G>A	uc001gkz.2	+	10	4573	c.3409G>A	c.(3409-3411)GAT>AAT	p.D1137N	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1137					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TGTGAGCGGAGATGGCTGCTC	0.408													37	17					0	0	0.010771	0	0
CFHR4	10877	broad.mit.edu	37	1	196871568	196871568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:196871568C>T	uc001gto.2	+	2	148	c.79C>T	c.(79-81)CCA>TCA	p.P27S	CFHR4_uc009wyy.2_Missense_Mutation_p.P26S|CFHR4_uc001gtp.2_Missense_Mutation_p.P27S	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	27	Sushi 1.					extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						TTGTGATTTTCCAGAAATTCA	0.279													44	45					0	0	0.014410	0	0
F13B	2165	broad.mit.edu	37	1	197024856	197024856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:197024856G>A	uc001gtt.1	-	8	1387	c.1343C>T	c.(1342-1344)CCT>CTT	p.P448L		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	448	Sushi 7.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						CAAGCAAACAGGTGGGGATGA	0.353													17	47					0	0	0.014323	0	0
PTPRC	5788	broad.mit.edu	37	1	198678823	198678823	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:198678823G>A	uc001gur.1	+	11	1215	c.1035G>A	c.(1033-1035)ATG>ATA	p.M345I	PTPRC_uc001gus.1_Missense_Mutation_p.M297I|PTPRC_uc001gut.1_Missense_Mutation_p.M184I|PTPRC_uc009wzf.1_Missense_Mutation_p.M233I|PTPRC_uc010ppg.1_Missense_Mutation_p.M281I	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	345	Extracellular (Potential).				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						CAGGTAATATGATATTTGATA	0.254													12	17					0	0	0.010729	0	0
CACNA1S	779	broad.mit.edu	37	1	201028335	201028335	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:201028335G>A	uc001gvv.2	-	27	3734	c.3507C>T	c.(3505-3507)CTC>CTT	p.L1169L		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1169	IV.|Helical; Name=S2 of repeat IV; (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TGAAGGCCATGAGCTTGAGGA	0.577													31	12					0	0	0.013726	0	0
CACNA1S	779	broad.mit.edu	37	1	201054654	201054654	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:201054654G>A	uc001gvv.2	-	8	1287	c.1060C>T	c.(1060-1062)CGG>TGG	p.R354W		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	354	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TGCTTCTCCCGGAGCTTCTGG	0.572											OREG0014068	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	85					0	0	0.000602	0	0
REN	5972	broad.mit.edu	37	1	204129781	204129781	+	Silent	SNP	C	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:204129781C>G	uc001haq.2	-	4	443	c.399G>C	c.(397-399)TCG>TCC	p.S133S		NM_000537	NP_000528	P00797	RENI_HUMAN	renin preproprotein	133					angiotensin maturation|regulation of MAPKKK cascade	extracellular space|membrane	aspartic-type endopeptidase activity			skin(3)|central_nervous_system(1)	4	all_cancers(21;0.00965)|Breast(84;0.116)|all_epithelial(62;0.157)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.109)		Aliskiren(DB01258)|Remikiren(DB00212)	TGGAGGAATCCGAAGCATCGA	0.542													22	69					0	0	0.005443	0	0
CDK18	5129	broad.mit.edu	37	1	205492667	205492667	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:205492667C>T	uc001hcr.2	+	3	406	c.187C>T	c.(187-189)CCA>TCA	p.P63S	CDK18_uc009xbk.1_RNA|CDK18_uc009xbl.1_RNA|CDK18_uc010pri.1_Missense_Mutation_p.P83L|CDK18_uc001hcp.2_Missense_Mutation_p.P63S|CDK18_uc001hcq.2_Missense_Mutation_p.P63S|CDK18_uc010prj.1_5'UTR|CDK18_uc001hcs.2_5'UTR|CDK18_uc009xbm.1_5'UTR	NM_212503	NP_997668	Q07002	CDK18_HUMAN	PCTAIRE protein kinase 3 isoform a	61							ATP binding|cyclin-dependent protein kinase activity|protein binding|signal transducer activity			stomach(2)	2						CACCTTCTCCCCAACAGACAG	0.667													8	2					0	0	0.008291	0	0
PM20D1	148811	broad.mit.edu	37	1	205813990	205813990	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:205813990C>T	uc001hdj.2	-	4	570	c.525G>A	c.(523-525)AGG>AGA	p.R175R	PM20D1_uc009xbr.2_RNA	NM_152491	NP_689704	Q6GTS8	P20D1_HUMAN	peptidase M20 domain containing 1 precursor	175						extracellular region	metal ion binding|peptidase activity			skin(1)	1	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0252)			GGATGTACTTCCTGATCAGCA	0.493													49	36					0	0	0.014410	0	0
C4BPA	722	broad.mit.edu	37	1	207307809	207307809	+	Missense_Mutation	SNP	G	A	A	rs141825051		TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:207307809G>A	uc001hfo.2	+	9	1339	c.1145G>A	c.(1144-1146)CGT>CAT	p.R382H		NM_000715	NP_000706	P04003	C4BPA_HUMAN	complement component 4 binding protein, alpha	382	Sushi 6.				complement activation, classical pathway|innate immune response	extracellular region	protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						AGGAAAAGTCGTCCTGCCAAT	0.398													19	66					0	0	0.002780	0	0
LPGAT1	9926	broad.mit.edu	37	1	211956832	211956832	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:211956832G>A	uc001hiu.2	-	5	1279	c.466C>T	c.(466-468)CGT>TGT	p.R156C	LPGAT1_uc001hiv.2_Missense_Mutation_p.R156C	NM_014873	NP_055688	Q92604	LGAT1_HUMAN	lysophosphatidylglycerol acyltransferase 1	156					phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity			ovary(1)|skin(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.00773)|all cancers(67;0.0765)|Epithelial(68;0.114)		TGTTGGTCACGATAAGATCTT	0.368													11	48					0	0	0.013537	0	0
PTPN14	5784	broad.mit.edu	37	1	214567112	214567112	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:214567112G>A	uc001hkk.1	-	10	1126	c.855C>T	c.(853-855)ATC>ATT	p.I285I	PTPN14_uc010pty.1_Silent_p.I186I	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	285	FERM.				lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		TGGCATTTTCGATATCATCCT	0.353													24	19					0	0	0.004656	0	0
SLC30A10	55532	broad.mit.edu	37	1	220091757	220091757	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:220091757G>A	uc001hlw.2	-	3	1009	c.798C>T	c.(796-798)CCC>CCT	p.P266P	SLC30A10_uc001hlu.1_RNA|SLC30A10_uc001hlv.2_Silent_p.P21P|SLC30A10_uc001hlx.2_Silent_p.P41P	NM_018713	NP_061183	Q6XR72	ZNT10_HUMAN	solute carrier family 30 (zinc transporter),	266	Extracellular (Potential).				zinc ion transport	integral to membrane|plasma membrane	cation transmembrane transporter activity				0				GBM - Glioblastoma multiforme(131;0.051)|all cancers(67;0.209)		CACTCTTCAGGGGAAGCACAT	0.507													25	73					0	0	0.005443	0	0
PCNXL2	80003	broad.mit.edu	37	1	233122064	233122064	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:233122064C>T	uc001hvl.2	-	33	6249	c.6014G>A	c.(6013-6015)GGC>GAC	p.G2005D	PCNXL2_uc001hvk.1_Missense_Mutation_p.G657D|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	2005	Ser-rich.					integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				ACTCAGGTGGCCGGTGGTGGT	0.687													3	6					0	0	0.004672	0	0
PCNXL2	80003	broad.mit.edu	37	1	233152691	233152691	+	Silent	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:233152691T>C	uc001hvl.2	-	27	5050	c.4815A>G	c.(4813-4815)CAA>CAG	p.Q1605Q	PCNXL2_uc001hvk.1_Silent_p.Q257Q|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1605						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GTGCACAGTGTTGAATCCATT	0.433													37	46					0	0	0.004878	0	0
KIAA1804	84451	broad.mit.edu	37	1	233490664	233490664	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:233490664G>A	uc001hvt.3	+	4	1479	c.1218G>A	c.(1216-1218)ATG>ATA	p.M406I	KIAA1804_uc001hvs.1_Missense_Mutation_p.M406I	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	406					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				GGGCAGTGATGACTGAGATGC	0.388													61	55					0	0	0.014410	0	0
KIAA1804	84451	broad.mit.edu	37	1	233511738	233511738	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:233511738G>A	uc001hvt.3	+	7	2013	c.1752G>A	c.(1750-1752)AGG>AGA	p.R584R	KIAA1804_uc001hvu.3_Silent_p.R30R	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	584					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				ATGTAAAAAGGAATTTTAAGA	0.348													24	24					0	0	0.002780	0	0
NLRP3	114548	broad.mit.edu	37	1	247587626	247587626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:247587626C>T	uc001icr.2	+	5	1019	c.881C>T	c.(880-882)CCC>CTC	p.P294L	NLRP3_uc001ics.2_Missense_Mutation_p.P294L|NLRP3_uc001icu.2_Missense_Mutation_p.P294L|NLRP3_uc001icw.2_Missense_Mutation_p.P294L|NLRP3_uc001icv.2_Missense_Mutation_p.P294L|NLRP3_uc010pyw.1_Missense_Mutation_p.P292L|NLRP3_uc001ict.1_Missense_Mutation_p.P292L	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	294	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			GTGAGAAAACCCTCCAGAATC	0.587													45	75					0	0	0.010771	0	0
OR1C1	26188	broad.mit.edu	37	1	247921397	247921397	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:247921397G>A	uc010pza.1	-	1	312	c.312C>T	c.(310-312)TTC>TTT	p.F104F		NM_012353	NP_036485	Q15619	OR1C1_HUMAN	olfactory receptor, family 1, subfamily C,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;4.34e-05)|all_epithelial(71;1.13e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)	all_cancers(173;0.0247)	OV - Ovarian serous cystadenocarcinoma(106;0.0168)			CAAAAGAAACGAAGAAGAAGA	0.473													36	21					0	0	0.004878	0	0
OR2W3	343171	broad.mit.edu	37	1	248059058	248059058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:248059058C>T	uc001idp.1	+	3	439	c.170C>T	c.(169-171)ACC>ATC	p.T57I	OR2W3_uc010pzb.1_Missense_Mutation_p.T57I	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	57	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			CACCTCCACACCCCCATGTAC	0.572													83	153					0	0	0.014410	0	0
OR2L2	26246	broad.mit.edu	37	1	248201573	248201573	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:248201573G>A	uc001idw.2	+	1	100	c.4G>A	c.(4-6)GAA>AAA	p.E2K	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	2	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			ATTCCCCATGGAAAATTACAA	0.289													56	50					0	0	0.014410	0	0
OR2L13	284521	broad.mit.edu	37	1	248263295	248263295	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:248263295C>T	uc001ids.2	+	3	955	c.618C>T	c.(616-618)CTC>CTT	p.L206L		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	206	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			GCCTCTTTCTCCTTTTCCCTT	0.443													48	104					0	0	0.014410	0	0
OR2M2	391194	broad.mit.edu	37	1	248343915	248343915	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:248343915C>T	uc010pzf.1	+	1	628	c.628C>T	c.(628-630)CCT>TCT	p.P210S		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	210	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			GCTTGTTTTCCCTGTTGCAAT	0.423													84	143					0	0	0.014410	0	0
OR2M7	391196	broad.mit.edu	37	1	248487408	248487408	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:248487408C>T	uc010pzk.1	-	1	463	c.463G>A	c.(463-465)GAT>AAT	p.D155N		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	155	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ATGATTCCATCTGTAGAGCCC	0.488													125	179					0	0	0.014410	0	0
OR14C36	127066	broad.mit.edu	37	1	248512703	248512703	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:248512703C>T	uc010pzl.1	+	1	627	c.627C>T	c.(625-627)TTC>TTT	p.F209F		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GCGGCTGTTTCATCTTTATCA	0.502													43	92					0	0	0.013114	0	0
OR2T2	401992	broad.mit.edu	37	1	248616137	248616137	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:248616137C>T	uc001iek.1	+	1	39	c.39C>T	c.(37-39)TTC>TTT	p.F13F		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	13	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CCACTAACTTCGTCCTCACAG	0.507													33	216					0	0	0.014410	0	0
OR2T2	401992	broad.mit.edu	37	1	248616302	248616302	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:248616302C>T	uc001iek.1	+	1	204	c.204C>T	c.(202-204)TCC>TCT	p.S68S		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GCCAGCTCTCCATCATGGATA	0.512													56	154					0	0	0.014410	0	0
IL2RA	3559	broad.mit.edu	37	10	6061880	6061880	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:6061880G>A	uc001iiz.1	-	5	767	c.608C>T	c.(607-609)CCC>CTC	p.P203L	IL2RA_uc009xih.1_Missense_Mutation_p.P131L|IL2RA_uc001ija.1_Intron	NM_000417	NP_000408	P01589	IL2RA_HUMAN	interleukin 2 receptor, alpha chain precursor	203	Extracellular (Potential).				cell proliferation	integral to membrane	interleukin-2 receptor activity			ovary(1)|skin(1)	2					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	ACGGCCTTCGGGGCTTGCCTG	0.602													19	41					0	0	0.007413	0	0
KIN	22944	broad.mit.edu	37	10	7811239	7811239	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:7811239C>T	uc001ijt.2	-	8	786	c.738G>A	c.(736-738)CAG>CAA	p.Q246Q	KIN_uc010qaz.1_RNA|KIN_uc009xip.2_Silent_p.Q246Q|KIN_uc010qba.1_Silent_p.Q140Q	NM_012311	NP_036443	O60870	KIN17_HUMAN	HsKin17 protein	246					DNA recombination|DNA repair|DNA replication|interspecies interaction between organisms|mRNA processing	cytoplasm|nuclear matrix	double-stranded DNA binding|RNA binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						GAGTTGAGCTCTGGGAAGATT	0.433													41	8					0	0	0.006999	0	0
C10orf113	387638	broad.mit.edu	37	10	21414812	21414812	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:21414812G>A	uc001iqm.2	-	2	398	c.378C>T	c.(376-378)TTC>TTT	p.F126F	NEBL_uc001iqk.2_Intron	NM_001010896	NP_001010896	Q5VZT2	CJ113_HUMAN	hypothetical protein LOC387638	136										ovary(3)|pancreas(1)	4						TTATGCCCTGGAATTTAAATC	0.433													20	43					0	0	0.012319	0	0
PIP4K2A	5305	broad.mit.edu	37	10	22830952	22830952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:22830952C>T	uc001irl.3	-	8	1065	c.817G>A	c.(817-819)GAC>AAC	p.D273N	PIP4K2A_uc010qcu.1_Missense_Mutation_p.D133N	NM_005028	NP_005019	P48426	PI42A_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	273	PIPK.						1-phosphatidylinositol-4-phosphate 5-kinase activity|1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding			ovary(1)|skin(1)	2						AGACTGTAGTCCATGAGCTTC	0.542													41	6					0	0	0.014410	0	0
KIAA1217	56243	broad.mit.edu	37	10	24816916	24816916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:24816916G>A	uc001iru.3	+	14	3353	c.2950G>A	c.(2950-2952)GGG>AGG	p.G984R	KIAA1217_uc001irs.2_Missense_Mutation_p.G904R|KIAA1217_uc001irt.3_Missense_Mutation_p.G949R|KIAA1217_uc010qcy.1_Missense_Mutation_p.G949R|KIAA1217_uc010qcz.1_Missense_Mutation_p.G949R|KIAA1217_uc010qda.1_RNA|KIAA1217_uc001irw.2_Missense_Mutation_p.G667R|KIAA1217_uc001irz.2_Missense_Mutation_p.G667R|KIAA1217_uc001irx.2_Missense_Mutation_p.G667R|KIAA1217_uc001iry.2_Missense_Mutation_p.G667R	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	984	Potential.				embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						TCACTATAATGGGAAAGAGTT	0.408													60	16					0	0	0.014410	0	0
APBB1IP	54518	broad.mit.edu	37	10	26849092	26849092	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:26849092G>A	uc001iss.2	+	12	1535	c.1214G>A	c.(1213-1215)AGA>AAA	p.R405K		NM_019043	NP_061916	Q7Z5R6	AB1IP_HUMAN	amyloid beta (A4) precursor protein-binding,	405	PH.				blood coagulation|signal transduction	cytoskeleton|cytosol|focal adhesion|lamellipodium				lung(4)|skin(2)|central_nervous_system(1)	7						GATGACACAAGAACCCTTAAC	0.483													33	58					0	0	0.003755	0	0
PARD3	56288	broad.mit.edu	37	10	34573111	34573111	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:34573111G>A	uc010qej.1	-	21	3137	c.3137C>T	c.(3136-3138)TCC>TTC	p.S1046F	PARD3_uc010qek.1_Missense_Mutation_p.S1043F|PARD3_uc010qel.1_Intron|PARD3_uc010qem.1_Missense_Mutation_p.S1030F|PARD3_uc010qen.1_Missense_Mutation_p.S1000F|PARD3_uc010qeo.1_Intron|PARD3_uc010qep.1_Missense_Mutation_p.S956F|PARD3_uc010qeq.1_Intron	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	1046					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				TGATGTAAAGGATTCCTGTAT	0.338													39	16					0	0	0.006999	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37421200	37421200	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:37421200G>A	uc001iza.1	+	4	474	c.375G>A	c.(373-375)ACG>ACA	p.T125T		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	181	ANK 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						TATCCATAACGAAAAGAAGTG	0.284													36	12					0	0	0.011902	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37482150	37482150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:37482150G>A	uc001iza.1	+	27	2509	c.2410G>A	c.(2410-2412)GCC>ACC	p.A804T		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	860						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						TCCAACTAAAGCCTTAGAATT	0.274													29	7					0	0	0.013726	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	Missense_Mutation	SNP	A	G	G	rs2257765		TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:38654432A>G	uc010qex.1	+	5	599	c.524A>G	c.(523-525)AAT>AGT	p.N175S	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Missense_Mutation_p.N173S					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						TCATCTCGCAATGCAAGGAAA	0.453													3	33					0	0	0.004672	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43662469	43662469	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:43662469C>T	uc001jan.2	+	6	1512	c.1177C>T	c.(1177-1179)CCT>TCT	p.P393S		NM_018590	NP_061060	Q8N6G5	CGAT2_HUMAN	chondroitin sulfate	393	Lumenal (Potential).				chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Golgi cisterna membrane|integral to Golgi membrane	glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding			ovary(1)	1						GGTGTTTTACCCTGTGGTGTT	0.363													8	18					0	0	0.004482	0	0
ZNF485	220992	broad.mit.edu	37	10	44112785	44112785	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:44112785C>T	uc010qfc.1	+	5	1488	c.1294C>T	c.(1294-1296)CAT>TAT	p.H432Y	ZNF485_uc010qfd.1_Missense_Mutation_p.H341Y	NM_145312	NP_660355	Q8NCK3	ZN485_HUMAN	zinc finger protein 485	432	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TAAGAAAATTCATAATAAAGA	0.358													20	8					0	0	0.010504	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999878	46999878	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:46999878A>G	uc001jec.2	+	3	1133	c.998A>G	c.(997-999)CAG>CGG	p.Q333R	GPRIN2_uc010qfq.1_Missense_Mutation_p.Q96R	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	333											0						CTGTCAGCCCAGGATGCTGGT	0.642													20	27					0	0	0.012319	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49654486	49654486	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:49654486G>A	uc001jgt.2	-	10	2342	c.2045C>T	c.(2044-2046)TCG>TTG	p.S682L	ARHGAP22_uc001jgs.2_Missense_Mutation_p.S592L|ARHGAP22_uc001jgu.2_Missense_Mutation_p.S698L|ARHGAP22_uc010qgl.1_Missense_Mutation_p.S639L|ARHGAP22_uc010qgm.1_Missense_Mutation_p.S688L|ARHGAP22_uc001jgv.2_Missense_Mutation_p.S380L|ARHGAP22_uc001jgr.2_Missense_Mutation_p.S399L	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	682	Potential.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						TCCTAGGGTCGAAAAAAACTC	0.542													44	18					0	0	0.014410	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49663151	49663151	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:49663151G>A	uc001jgt.2	-	6	983	c.686C>T	c.(685-687)TCC>TTC	p.S229F	ARHGAP22_uc001jgs.2_Missense_Mutation_p.S139F|ARHGAP22_uc001jgu.2_Missense_Mutation_p.S245F|ARHGAP22_uc010qgl.1_Missense_Mutation_p.S186F|ARHGAP22_uc010qgm.1_Missense_Mutation_p.S235F|ARHGAP22_uc001jgv.2_5'UTR	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	229	Rho-GAP.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						CTTCAGCAGGGAGGCCACCGT	0.657													9	14					0	0	0.010729	0	0
C10orf72	196740	broad.mit.edu	37	10	50255027	50255028	+	Splice_Site	DNP	CC	TT	TT			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:50255027_50255028CC>TT	uc001jhf.2	-	7	866	c.837_splice	c.e7+1	p.L279_splice		NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1							integral to membrane|plasma membrane					0						CGGTTACTTACCAGCGTGACTT	0.441													93	35					0	0	0.004672	0	0
ASAH2	56624	broad.mit.edu	37	10	52008287	52008287	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:52008287G>A	uc001jjd.2	-	1	84	c.84C>T	c.(82-84)CTC>CTT	p.L28L	ASAH2_uc009xos.2_Silent_p.L28L	NM_019893	NP_063946	Q9NR71	ASAH2_HUMAN	N-acylsphingosine amidohydrolase 2 isoform a	28	Helical; Signal-anchor for type II membrane protein; (Potential).				apoptosis|ceramide metabolic process|signal transduction	integral to membrane|mitochondrion|plasma membrane	ceramidase activity				0						ACAAGAGGCTGAGAAGGGCCA	0.448													30	13					0	0	0.003271	0	0
PCDH15	65217	broad.mit.edu	37	10	55581797	55581797	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:55581797C>T	uc001jju.1	-	33	6084	c.5689G>A	c.(5689-5691)GCT>ACT	p.A1897T	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Missense_Mutation_p.A751T|PCDH15_uc010qhv.1_Missense_Mutation_p.A1894T|PCDH15_uc010qhw.1_Missense_Mutation_p.A1857T|PCDH15_uc010qhx.1_Missense_Mutation_p.A1828T|PCDH15_uc010qhy.1_Missense_Mutation_p.A1904T|PCDH15_uc010qhz.1_Missense_Mutation_p.A1899T|PCDH15_uc010qia.1_Missense_Mutation_p.A1877T|PCDH15_uc010qib.1_Missense_Mutation_p.A1874T	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1897	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TACATGTTAGCTACTGATTTT	0.368										HNSCC(58;0.16)			69	19					0	0	0.014410	0	0
ANKRD22	118932	broad.mit.edu	37	10	90582717	90582717	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:90582717A>G	uc001kfj.3	-	6	925	c.557T>C	c.(556-558)ATG>ACG	p.M186T		NM_144590	NP_653191	Q5VYY1	ANR22_HUMAN	ankyrin repeat domain 22	186											0		Colorectal(252;0.0163)		Colorectal(12;6.29e-05)|COAD - Colon adenocarcinoma(12;7.69e-05)		TTTCCTTAGCATTAATTCAAT	0.403													64	20					0	0	0.014410	0	0
SORBS1	10580	broad.mit.edu	37	10	97096831	97096831	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:97096831G>A	uc001kkp.2	-	28	3131	c.3086C>T	c.(3085-3087)CCC>CTC	p.P1029L	SORBS1_uc001kkk.2_Intron|SORBS1_uc001kkl.2_Intron|SORBS1_uc001kkn.2_Intron|SORBS1_uc001kkm.2_Intron|SORBS1_uc001kko.2_Intron|SORBS1_uc001kkq.2_Intron|SORBS1_uc001kkr.2_Intron|SORBS1_uc001kks.2_Intron|SORBS1_uc001kkt.2_Intron|SORBS1_uc001kku.2_Intron|SORBS1_uc001kkv.2_Intron|SORBS1_uc001kkw.2_Missense_Mutation_p.P983L|SORBS1_uc010qoe.1_Intron	NM_001034954	NP_001030126	Q9BX66	SRBS1_HUMAN	sorbin and SH3 domain containing 1 isoform 3	1029					focal adhesion assembly|glucose transport|insulin receptor signaling pathway|muscle contraction|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|stress fiber assembly	centrosome|cytosol|focal adhesion|membrane raft|nucleus|stress fiber|zonula adherens	actin binding|insulin receptor binding|SH3/SH2 adaptor activity			breast(1)	1		Colorectal(252;0.0429)		Epithelial(162;1.7e-06)|all cancers(201;6.52e-05)		AGACAGGGAGGGACTGGCCCT	0.592													36	6					0	0	0.005524	0	0
COL17A1	1308	broad.mit.edu	37	10	105810657	105810657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:105810657G>A	uc001kxr.2	-	26	2210	c.2041C>T	c.(2041-2043)CCT>TCT	p.P681S	MIR936_hsa-mir-936|MI0005758_5'Flank	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	681	Extracellular (Potential).|Triple-helical region.				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		AGACCTACAGGACCTGCCCGG	0.448													26	8					0	0	0.005443	0	0
ADAM12	8038	broad.mit.edu	37	10	127753538	127753538	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:127753538G>A	uc001ljk.2	-	14	1868	c.1455C>T	c.(1453-1455)TCC>TCT	p.S485S	ADAM12_uc010qul.1_Silent_p.S436S|ADAM12_uc001ljm.2_Silent_p.S485S|ADAM12_uc001ljn.2_Silent_p.S482S|ADAM12_uc001ljl.3_Silent_p.S482S	NM_003474	NP_003465	O43184	ADA12_HUMAN	ADAM metallopeptidase domain 12 isoform 1	485	Extracellular (Potential).|Disintegrin.				cell adhesion|epidermal growth factor receptor signaling pathway|myoblast fusion|proteolysis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|protein binding|SH3 domain binding|zinc ion binding			breast(4)|ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	9		all_epithelial(44;7.06e-05)|all_lung(145;0.00563)|Lung NSC(174;0.00834)|Colorectal(57;0.102)|all_neural(114;0.107)|Breast(234;0.22)		COAD - Colon adenocarcinoma(40;0.141)|Colorectal(40;0.216)		AGGAGTTGCTGGAGTCCCTGC	0.597													7	4					0	0	0.001984	0	0
JAKMIP3	282973	broad.mit.edu	37	10	133978234	133978234	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:133978234G>A	uc001lkx.3	+	20	2479	c.2479G>A	c.(2479-2481)GAA>AAA	p.E827K	JAKMIP3_uc009yba.1_Missense_Mutation_p.E264K	NM_001105521	NP_001098991			Janus kinase and microtubule interacting protein											breast(1)	1		all_cancers(35;5.63e-09)|all_epithelial(44;9.25e-07)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|Colorectal(31;0.0721)|all_neural(114;0.0726)|Breast(234;0.0949)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;0.000104)|Epithelial(32;0.000142)|all cancers(32;0.000185)|BRCA - Breast invasive adenocarcinoma(275;0.224)		GGAACTGGAGGAAAAGGTAAA	0.433													12	6					0	0	0.013537	0	0
DPYSL4	10570	broad.mit.edu	37	10	134008372	134008372	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr10:134008372G>T	uc009ybb.2	+	4	491	c.337G>T	c.(337-339)GGT>TGT	p.G113C		NM_006426	NP_006417	O14531	DPYL4_HUMAN	dihydropyrimidinase-like 4	113					axon guidance|pyrimidine base catabolic process	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			central_nervous_system(2)	2		all_cancers(35;4.33e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;7.21e-05)|Epithelial(32;8.01e-05)|all cancers(32;9.29e-05)|BRCA - Breast invasive adenocarcinoma(275;0.206)		CCCCGACACGGGTGTGAGCCT	0.657													47	10					3.68337e-26	4.13677e-26	0.014410	1	0
ATHL1	80162	broad.mit.edu	37	11	293411	293412	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:293411_293412CC>TT	uc010qvu.1	+	9	1504_1505	c.1389_1390CC>TT	c.(1387-1392)ATCCCC>ATTTCC	p.P464S	ATHL1_uc001lor.3_Intron|ATHL1_uc001los.1_Missense_Mutation_p.P491S|ATHL1_uc001lou.3_Missense_Mutation_p.P39S|ATHL1_uc001lov.3_5'Flank	NM_025092	NP_079368	Q32M88	ATHL1_HUMAN	ATH1, acid trehalase-like 1	464					carbohydrate metabolic process		hydrolase activity, acting on glycosyl bonds			liver(1)|central_nervous_system(1)|skin(1)	3		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;5.38e-28)|Epithelial(43;3.25e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		GTCTTCCCATCCCCAGCCAGTG	0.629													19	33					0	0	0.004672	0	0
RRM1	6240	broad.mit.edu	37	11	4127421	4127421	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:4127421A>G	uc001lyw.3	+	3	573	c.254A>G	c.(253-255)AAC>AGC	p.N85S	RRM1_uc009yeh.1_5'UTR|RRM1_uc009yei.2_Missense_Mutation_p.N45S|RRM1_uc010qyc.1_Intron	NM_001033	NP_001024	P23921	RIR1_HUMAN	ribonucleoside-diphosphate reductase M1 chain	85	ATP-cone.				deoxyribonucleotide biosynthetic process|DNA replication|nucleobase, nucleoside and nucleotide interconversion	cytosol|nucleoplasm|ribonucleoside-diphosphate reductase complex	ATP binding|ribonucleoside-diphosphate reductase activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.00502)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0848)|LUSC - Lung squamous cell carcinoma(625;0.205)	Clofarabine(DB00631)|Fludarabine(DB01073)|Gemcitabine(DB00441)|Hydroxyurea(DB01005)	GCTGTCTCTAACTTGCACAAA	0.408													13	14					0	0	0.001855	0	0
OR52I2	143502	broad.mit.edu	37	11	4608339	4608339	+	Silent	SNP	G	A	A	rs145090174		TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:4608339G>A	uc010qyh.1	+	1	297	c.297G>A	c.(295-297)GTG>GTA	p.V99V		NM_001005170	NP_001005170	Q8NH67	O52I2_HUMAN	olfactory receptor, family 52, subfamily I,	99	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGGCTGCTGTGGACATTGTTA	0.483													55	227					0	0	0.014410	0	0
OR51A4	401666	broad.mit.edu	37	11	4967729	4967729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:4967729C>T	uc010qys.1	-	1	602	c.602G>A	c.(601-603)GGC>GAC	p.G201D		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	201	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		TCCAAAAAAGCCATAGATAAC	0.413													7	54					0	0	0.001855	0	0
OR51A4	401666	broad.mit.edu	37	11	4968057	4968057	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:4968057G>T	uc010qys.1	-	1	274	c.274C>A	c.(274-276)CCT>ACT	p.P92T		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	92	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GAAATTTCAGGAGCATTGAAC	0.423													62	70					5.82089e-37	6.56602e-37	0.014410	1	0
OR51B6	390058	broad.mit.edu	37	11	5373574	5373574	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:5373574C>T	uc010qzb.1	+	1	837	c.837C>T	c.(835-837)TTC>TTT	p.F279F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	279	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACATCCACTTCCTTTTCCCAC	0.393													60	66					0	0	0.014410	0	0
OR51M1	390059	broad.mit.edu	37	11	5411279	5411279	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:5411279C>T	uc010qzc.1	+	1	651	c.651C>T	c.(649-651)TTC>TTT	p.F217F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	217						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGGTAGTTTTCACTGTGATGC	0.537													38	46					0	0	0.003755	0	0
OR52E4	390081	broad.mit.edu	37	11	5905795	5905795	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:5905795C>T	uc010qzs.1	+	1	273	c.273C>T	c.(271-273)CTC>CTT	p.L91L	TRIM5_uc001mbq.1_Intron	NM_001005165	NP_001005165	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGTTCAACCTCCAAGAGATCA	0.468													31	123					0	0	0.012213	0	0
CYP2R1	120227	broad.mit.edu	37	11	14901713	14901713	+	Silent	SNP	A	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:14901713A>G	uc001mlr.2	-	3	969	c.969T>C	c.(967-969)ATT>ATC	p.I323I	CYP2R1_uc001mlo.2_Silent_p.I90I|CYP2R1_uc001mlp.2_Silent_p.I206I|CYP2R1_uc001mlq.2_RNA|CYP2R1_uc001mls.1_Silent_p.I268I	NM_024514	NP_078790	Q6VVX0	CP2R1_HUMAN	cytochrome P450, family 2, subfamily R,	323					hormone biosynthetic process|vitamin D metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	cholestanetriol 26-monooxygenase activity|electron carrier activity|heme binding|vitamin D3 25-hydroxylase activity			ovary(1)|central_nervous_system(1)	2					Cholecalciferol(DB00169)|Ergocalciferol(DB00153)	CCATGAAAAGAATCGCCCACC	0.408													19	26					0	0	0.008871	0	0
C11orf58	10944	broad.mit.edu	37	11	16774376	16774376	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:16774376C>T	uc001mmk.2	+	4	431	c.253C>T	c.(253-255)CAG>TAG	p.Q85*	C11orf58_uc010rct.1_Nonsense_Mutation_p.Q41*	NM_014267	NP_055082	O00193	SMAP_HUMAN	small acidic protein isoform a	85											0						GTCTCAATATCAGCAAAGTAT	0.338													10	32					0	0	0.010729	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955687	18955687	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:18955687G>A	uc001mpg.2	-	1	863	c.645C>T	c.(643-645)TAC>TAT	p.Y215Y		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	215	Cytoplasmic (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						GGATGGTCACGTACAGCCTGG	0.517													18	54					0	0	0.004990	0	0
NELL1	4745	broad.mit.edu	37	11	21592418	21592418	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:21592418C>T	uc001mqe.2	+	18	2242	c.2089C>T	c.(2089-2091)CAA>TAA	p.Q697*	NELL1_uc001mqf.2_Nonsense_Mutation_p.Q650*|NELL1_uc009yid.2_Nonsense_Mutation_p.Q725*|NELL1_uc010rdo.1_Nonsense_Mutation_p.Q640*|NELL1_uc010rdp.1_Nonsense_Mutation_p.Q410*|NELL1_uc001mqh.2_Nonsense_Mutation_p.Q242*	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	697	VWFC 4.				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						ATGTTTAGACCAAAATGGTCA	0.473													67	79					0	0	0.014410	0	0
BBOX1	8424	broad.mit.edu	37	11	27114840	27114841	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:27114840_27114841GG>AA	uc001mre.1	+	5	828_829	c.460_461GG>AA	c.(460-462)GGA>AAA	p.G154K	BBOX1_uc009yih.1_Missense_Mutation_p.G154K|BBOX1_uc001mrg.1_Missense_Mutation_p.G154K	NM_003986	NP_003977	O75936	BODG_HUMAN	gamma-butyrobetaine dioxygenase	154					carnitine biosynthetic process	actin cytoskeleton|cytosol|intracellular membrane-bounded organelle	gamma-butyrobetaine dioxygenase activity|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1					Succinic acid(DB00139)|Vitamin C(DB00126)	AAGACTCACCGGAGCATCTGAC	0.426													35	43					0	0	0.004672	0	0
CCDC34	91057	broad.mit.edu	37	11	27362301	27362301	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:27362301C>T	uc001mrh.1	-	5	903	c.849G>A	c.(847-849)GCG>GCA	p.A283A		NM_030771	NP_110398	Q96HJ3	CCD34_HUMAN	coiled-coil domain containing 34 isoform 1	283	Potential.										0						GTTTATGTTTCGCATTTTCCA	0.358													36	59					0	0	0.005524	0	0
FSHB	2488	broad.mit.edu	37	11	30255338	30255338	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:30255338G>A	uc001msl.2	+	3	450	c.381G>A	c.(379-381)ATG>ATA	p.M127I	FSHB_uc001msm.2_Missense_Mutation_p.M127I|FSHB_uc001msn.2_Missense_Mutation_p.M127I	NM_000510	NP_000501	P01225	FSHB_HUMAN	follicle stimulating hormone, beta polypeptide	127					cellular nitrogen compound metabolic process|female gamete generation|female pregnancy|ovarian follicle development|peptide hormone processing|progesterone biosynthetic process|spermatogenesis|transforming growth factor beta receptor signaling pathway	cytoplasm|extracellular region|soluble fraction	follicle-stimulating hormone activity|protein heterodimerization activity			ovary(3)	3					Follitropin beta(DB00066)|Thyrotropin Alfa(DB00024)|Urofollitropin(DB00094)	TTGGTGAAATGAAAGAATAAA	0.512													29	25					0	0	0.006320	0	0
ELF5	2001	broad.mit.edu	37	11	34533099	34533099	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:34533099G>A	uc001mvo.1	-	1	248	c.18C>T	c.(16-18)CAC>CAT	p.H6H	ELF5_uc001mvp.1_Intron|ELF5_uc009ykd.1_Intron|ELF5_uc001mvq.1_Intron	NM_198381	NP_938195	Q9UKW6	ELF5_HUMAN	E74-like factor 5 ESE-2a	6					cell proliferation|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.0087)|all_hematologic(20;0.0384)				ACCTGTGGGAGTGAGGCAGAG	0.522													12	51					0	0	0.013537	0	0
ACP2	53	broad.mit.edu	37	11	47266324	47266325	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:47266324_47266325CC>TT	uc001nei.2	-	7	850_851	c.733_734GG>AA	c.(733-735)GGA>AAA	p.G245K	ACP2_uc010rhe.1_Missense_Mutation_p.G217K|ACP2_uc009ylj.2_Missense_Mutation_p.G173K|ACP2_uc010rhf.1_Missense_Mutation_p.G213K|ACP2_uc010rhg.1_Missense_Mutation_p.G182K|ACP2_uc010rhh.1_Missense_Mutation_p.G58K|ACP2_uc010rhi.1_Missense_Mutation_p.G58K|ACP2_uc009ylk.2_Missense_Mutation_p.G212K	NM_001610	NP_001601	P11117	PPAL_HUMAN	acid phosphatase 2, lysosomal isoform 1	245	Lumenal (Potential).					integral to membrane|lysosomal lumen|lysosomal membrane	acid phosphatase activity			ovary(1)	1						CTGGTAGATTCCGAAGAGGAAG	0.599													35	48					0	0	0.004672	0	0
MYBPC3	4607	broad.mit.edu	37	11	47372982	47372982	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:47372982C>T	uc001nfa.3	-	2	155	c.100G>A	c.(100-102)GAG>AAG	p.E34K		NM_000256	NP_000247	Q14896	MYPC3_HUMAN	myosin binding protein C, cardiac	34					cardiac muscle contraction|cell adhesion|muscle filament sliding|regulation of muscle filament sliding|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	C zone|cytosol|striated muscle myosin thick filament	actin binding|ATPase activator activity|metal ion binding|myosin heavy chain binding|structural constituent of muscle|titin binding			ovary(2)|central_nervous_system(1)	3				Lung(87;0.176)		CCTGCCCGCTCTGTCTCGGCC	0.642													10	11					0	0	0.001855	0	0
OR4A47	403253	broad.mit.edu	37	11	48510571	48510571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:48510571C>T	uc010rhx.1	+	1	227	c.227C>T	c.(226-228)TCC>TTC	p.S76F		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	76	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCATCCATTTCCCCCAGATTG	0.423													53	60					0	0	0.014410	0	0
FOLH1	2346	broad.mit.edu	37	11	49214396	49214396	+	Silent	SNP	A	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:49214396A>T	uc001ngy.2	-	4	723	c.462T>A	c.(460-462)GTT>GTA	p.V154V	FOLH1_uc001ngz.2_Silent_p.V154V|FOLH1_uc009yly.2_Silent_p.V139V|FOLH1_uc009ylz.2_Silent_p.V139V|FOLH1_uc009yma.2_5'UTR|FOLH1_uc001nha.2_Silent_p.V139V	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	154	Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	CAATATCCGAAACATTTTCAT	0.328													65	118					0	0	0.014410	0	0
OR4C15	81309	broad.mit.edu	37	11	55322535	55322535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:55322535G>A	uc010rig.1	+	1	753	c.753G>A	c.(751-753)ATG>ATA	p.M251I		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	197	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TTGGCCTCATGGTGGTCATCA	0.458										HNSCC(20;0.049)			27	35					0	0	0.003954	0	0
OR4C11	219429	broad.mit.edu	37	11	55371784	55371784	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:55371784C>T	uc010rii.1	-	1	66	c.66G>A	c.(64-66)CAG>CAA	p.Q22Q		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	22	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ACACTATTTTCTGCCTCAAGG	0.398													30	2					0	0	0.010818	0	0
OR5D18	219438	broad.mit.edu	37	11	55587294	55587294	+	Silent	SNP	C	T	T	rs145410438		TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:55587294C>T	uc010rin.1	+	1	189	c.189C>T	c.(187-189)TTC>TTT	p.F63F		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	63	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.F63F(1)		skin(2)|ovary(1)	3		all_epithelial(135;0.208)				TGTACTTTTTCCTCAGCCAAC	0.418													80	123					0	0	0.014410	0	0
OR5L2	26338	broad.mit.edu	37	11	55594730	55594730	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:55594730C>T	uc001nhy.1	+	1	36	c.36C>T	c.(34-36)TTC>TTT	p.F12F		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	12	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				TGGCTGAGTTCATTCTCCTTG	0.433										HNSCC(27;0.073)			74	136					0	0	0.014410	0	0
OR8K3	219473	broad.mit.edu	37	11	56086329	56086329	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:56086329C>T	uc010rjf.1	+	1	547	c.547C>T	c.(547-549)CCT>TCT	p.P183S		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					TGACAGTCTCCCTTTGTTACC	0.333													38	79					0	0	0.004289	0	0
OR5R1	219479	broad.mit.edu	37	11	56184981	56184981	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:56184981G>A	uc010rji.1	-	1	728	c.728C>T	c.(727-729)TCC>TTC	p.S243F		NM_001004744	NP_001004744	Q8NH85	OR5R1_HUMAN	olfactory receptor, family 5, subfamily R,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					CACCATATGGGAGCCACAGGT	0.458													46	82					0	0	0.014410	0	0
OR5M9	390162	broad.mit.edu	37	11	56230507	56230507	+	Missense_Mutation	SNP	C	T	T	rs138157356	by1000genomes	TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:56230507C>T	uc010rjj.1	-	1	371	c.371G>A	c.(370-372)GGC>GAC	p.G124D		NM_001004743	NP_001004743	Q8NGP3	OR5M9_HUMAN	olfactory receptor, family 5, subfamily M,	124	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					AGGGTTGCAGCCGGCCATGTA	0.493													29	51					0	0	0.009535	0	0
OR9G4	283189	broad.mit.edu	37	11	56510788	56510788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:56510788C>T	uc010rjo.1	-	1	500	c.500G>A	c.(499-501)GGA>GAA	p.G167E		NM_001005284	NP_001005284	Q8NGQ1	OR9G4_HUMAN	olfactory receptor, family 9, subfamily G,	167	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						ATTCAAAAATCCTCCTATGTA	0.453													48	59					0	0	0.014410	0	0
ZP1	22917	broad.mit.edu	37	11	60637245	60637245	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:60637245C>T	uc001nqd.2	+	3	574	c.554C>T	c.(553-555)CCA>CTA	p.P185L	ZP1_uc001nqe.2_5'Flank	NM_207341	NP_997224	P60852	ZP1_HUMAN	zona pellucida glycoprotein 1 precursor	185	Extracellular (Potential).				single fertilization	integral to membrane|plasma membrane|proteinaceous extracellular matrix					0						CCACTGGACCCAGGGCACAGC	0.622													19	32					0	0	0.006122	0	0
CCDC87	55231	broad.mit.edu	37	11	66359618	66359618	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:66359618G>A	uc001oiq.3	-	1	937	c.869C>T	c.(868-870)CCT>CTT	p.P290L	CCS_uc001oir.2_5'Flank	NM_018219	NP_060689	Q9NVE4	CCD87_HUMAN	coiled-coil domain containing 87	290										ovary(1)|skin(1)	2						GGGGGCCACAGGATAGCTGGG	0.597													42	61					0	0	0.014410	0	0
SSH3	54961	broad.mit.edu	37	11	67072263	67072263	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:67072263C>T	uc001okj.2	+	3	302	c.124C>T	c.(124-126)CGT>TGT	p.R42C	SSH3_uc001okk.2_RNA|SSH3_uc001okl.2_5'UTR	NM_017857	NP_060327	Q8TE77	SSH3_HUMAN	slingshot homolog 3	42					regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton|nucleus	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			TGCGGTGCTCCGTGGGGCTGT	0.512													12	9					0	0	0.010729	0	0
AIP	9049	broad.mit.edu	37	11	67258443	67258443	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:67258443C>T	uc001olv.2	+	6	1097	c.972C>T	c.(970-972)TTC>TTT	p.F324F		NM_003977	NP_003968	O00170	AIP_HUMAN	aryl hydrocarbon receptor interacting protein	324					protein maturation by protein folding|protein targeting to mitochondrion	nucleus	signal transducer activity|transcription coactivator activity|transcription factor binding|unfolded protein binding				0						AAGCCCGGTTCCGGGGGATCT	0.662									Familial_Isolated_Pituitary_Adenoma_				12	11					0	0	0.001855	0	0
PITPNM1	9600	broad.mit.edu	37	11	67267576	67267576	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:67267576G>A	uc001olx.2	-	5	1146	c.957C>T	c.(955-957)TCC>TCT	p.S319S	PITPNM1_uc001olw.2_5'Flank|PITPNM1_uc001oly.2_Silent_p.S319S|PITPNM1_uc001olz.2_Silent_p.S319S	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	319	Poly-Ser.				brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						CTCCATGTTGGGATGAGTAGG	0.692													6	51					0	0	0.001984	0	0
INPPL1	3636	broad.mit.edu	37	11	71945360	71945360	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:71945360T>C	uc001osf.2	+	20	2395	c.2248T>C	c.(2248-2250)TTT>CTT	p.F750L	INPPL1_uc001osg.2_Missense_Mutation_p.F508L	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	750					actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						CTACATTGAGTTTGAGAGCAT	0.547													24	42					0	0	0.004656	0	0
PDE2A	5138	broad.mit.edu	37	11	72294558	72294558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:72294558G>A	uc010rrc.1	-	20	1895	c.1652C>T	c.(1651-1653)TCT>TTT	p.S551F	PDE2A_uc001oso.2_Missense_Mutation_p.S530F|PDE2A_uc010rra.1_Missense_Mutation_p.S544F|PDE2A_uc001osn.2_Missense_Mutation_p.S295F|PDE2A_uc010rrb.1_Missense_Mutation_p.S542F|PDE2A_uc010rrd.1_Missense_Mutation_p.S436F	NM_002599	NP_002590	O00408	PDE2A_HUMAN	phosphodiesterase 2A isoform 1	551					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(2)|breast(1)|skin(1)	4			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	GTATAGGAGAGACTAGGGGAA	0.498													151	217					0	0	0.014410	0	0
ARHGEF17	9828	broad.mit.edu	37	11	73020361	73020361	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:73020361G>A	uc001otu.2	+	1	699	c.678G>A	c.(676-678)GGG>GGA	p.G226G		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Rho guanine nucleotide exchange factor (GEF) 17	226					actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity				0						CGCAGGCCGGGGCCCGGGCCT	0.692													24	38					0	0	0.003954	0	0
NEU3	10825	broad.mit.edu	37	11	74716559	74716559	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:74716559C>T	uc001ovw.2	+	3	564	c.408C>T	c.(406-408)TTC>TTT	p.F136F	NEU3_uc001ovv.2_Silent_p.F126F|NEU3_uc010rrl.1_Silent_p.F27F	NM_006656	NP_006647	A8K327	A8K327_HUMAN	sialidase 3	136										ovary(2)	2						TGTTCCTGTTCTTCATCTGTG	0.562													34	26					0	0	0.012213	0	0
NEU3	10825	broad.mit.edu	37	11	74716573	74716573	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:74716573G>T	uc001ovw.2	+	3	578	c.422G>T	c.(421-423)CGG>CTG	p.R141L	NEU3_uc001ovv.2_Missense_Mutation_p.R131L|NEU3_uc010rrl.1_Missense_Mutation_p.R32L	NM_006656	NP_006647	A8K327	A8K327_HUMAN	sialidase 3	141										ovary(2)	2						ATCTGTGTGCGGGGCCATGTC	0.547													37	40					1.06647e-15	1.19385e-15	0.003755	1	0
FAT3	120114	broad.mit.edu	37	11	92538510	92538510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:92538510G>A	uc001pdj.3	+	10	9105	c.9088G>A	c.(9088-9090)GAT>AAT	p.D3030N		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3030	Cadherin 28.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CCCAGTGTGTGATCAGGTGAG	0.423										TCGA Ovarian(4;0.039)			152	40					0	0	0.014410	0	0
FAT3	120114	broad.mit.edu	37	11	92569774	92569774	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:92569774C>T	uc001pdj.3	+	15	10146	c.10129C>T	c.(10129-10131)CAT>TAT	p.H3377Y		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3377	Extracellular (Potential).|Cadherin 31.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CGGACAGATTCATTTTTCCAT	0.413										TCGA Ovarian(4;0.039)			193	58					0	0	0.014410	0	0
EXPH5	23086	broad.mit.edu	37	11	108412425	108412425	+	Silent	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:108412425T>C	uc001pkk.2	-	2	345	c.234A>G	c.(232-234)TTA>TTG	p.L78L	EXPH5_uc010rwa.1_Silent_p.L2L	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	78					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		GTGGTTGTTTTAACATTTGGC	0.338													37	10					0	0	0.007835	0	0
BCO2	83875	broad.mit.edu	37	11	112088573	112088573	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:112088573C>T	uc001pnf.2	+	12	1833	c.1716C>T	c.(1714-1716)TTC>TTT	p.F572F	BCO2_uc001png.2_Silent_p.F499F|BCO2_uc001pnh.2_Silent_p.F538F|BCO2_uc010rwt.1_Silent_p.F467F|BCO2_uc009yyn.2_Silent_p.F532F|BCO2_uc001pni.2_Silent_p.F538F	NM_031938	NP_114144	Q9BYV7	BCDO2_HUMAN	beta-carotene dioxygenase 2 isoform a	572					carotene metabolic process|retinal metabolic process|retinoic acid metabolic process		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						CTTATGGGTTCCATGGTACCT	0.353													26	5					0	0	0.006320	0	0
IL10RA	3587	broad.mit.edu	37	11	117869953	117869953	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:117869953G>A	uc001prv.2	+	7	1411	c.1334G>A	c.(1333-1335)GGT>GAT	p.G445D	IL10RA_uc010rxl.1_Missense_Mutation_p.G425D|IL10RA_uc010rxm.1_Missense_Mutation_p.G425D|IL10RA_uc010rxn.1_Missense_Mutation_p.G296D|IL10RA_uc001prw.2_Missense_Mutation_p.G296D	NM_001558	NP_001549	Q13651	I10R1_HUMAN	interleukin 10 receptor, alpha precursor	445	Cytoplasmic (Potential).					integral to membrane|plasma membrane	interleukin-10 receptor activity			ovary(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.07e-05)|Epithelial(105;0.00108)		GCATTCCAGGGTTACCTGAGG	0.627													31	16					0	0	0.009535	0	0
BCL9L	283149	broad.mit.edu	37	11	118773008	118773008	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:118773008G>A	uc001pug.2	-	6	2409	c.1444C>T	c.(1444-1446)CCC>TCC	p.P482S	BCL9L_uc009zal.2_Missense_Mutation_p.P477S	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	482	Pro-rich.|Necessary for interaction with CTNNB1 (By similarity).				negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		TCCAGCGGGGGGCCCCCTAGG	0.647													48	66					0	0	0.014410	0	0
USP2	9099	broad.mit.edu	37	11	119228237	119228237	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:119228237G>A	uc001pwm.3	-	11	1860	c.1565C>T	c.(1564-1566)CCC>CTC	p.P522L	USP2_uc001pwl.3_Missense_Mutation_p.P313L|USP2_uc001pwn.3_Missense_Mutation_p.P279L	NM_004205	NP_004196	O75604	UBP2_HUMAN	ubiquitin specific peptidase 2 isoform a	522					cell cycle|muscle organ development|negative regulation of transcription from RNA polymerase II promoter|positive regulation of mitotic cell cycle|protein deubiquitination|protein stabilization|ubiquitin-dependent protein catabolic process	nucleus|perinuclear region of cytoplasm	cyclin binding|cysteine-type endopeptidase activity|metal ion binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity			ovary(2)|urinary_tract(1)|skin(1)	4		all_hematologic(192;4.65e-05)|Breast(348;0.0101)|all_neural(223;0.0218)|Medulloblastoma(222;0.0425)|Renal(330;0.157)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.000513)|Colorectal(284;0.0116)|Lung(307;0.0853)|LUSC - Lung squamous cell carcinoma(976;0.0889)		GTCTCTTAGGGGGaagttcac	0.358													49	12					0	0	0.014410	0	0
POU2F3	25833	broad.mit.edu	37	11	120175804	120175804	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:120175804C>T	uc001pxc.2	+	7	612	c.510C>T	c.(508-510)CTC>CTT	p.L170L	POU2F3_uc010rzk.1_Silent_p.L124L|POU2F3_uc010rzl.1_Silent_p.L100L|POU2F3_uc001pxe.1_5'Flank	NM_014352	NP_055167	Q9UKI9	PO2F3_HUMAN	POU transcription factor	170					negative regulation by host of viral transcription	cytoplasm	sequence-specific DNA binding			ovary(1)|skin(1)	2		Breast(109;0.0011)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;6.85e-06)		CCCAGCATCTCCCAGTGCCCA	0.577													34	14					0	0	0.013726	0	0
SORL1	6653	broad.mit.edu	37	11	121428069	121428069	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:121428069C>T	uc001pxx.2	+	19	2698	c.2618C>T	c.(2617-2619)TCT>TTT	p.S873F		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	873	Extracellular (Potential).|LDL-receptor class B 2.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GTCAATTCCTCTGTGCTTGAT	0.507													36	17					0	0	0.006999	0	0
OR8G2	26492	broad.mit.edu	37	11	124096099	124096099	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:124096099C>T	uc010saf.1	+	1	702	c.702C>T	c.(700-702)ATC>ATT	p.I234I		NM_001007249	NP_001007250	Q15614	OR8G2_HUMAN	olfactory receptor, family 8, subfamily G,	234						integral to membrane	olfactory receptor activity				0		Breast(109;0.0157)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.91e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		ACATCTTTATCATTGCCAGCA	0.498													45	18					0	0	0.014410	0	0
OR8D1	283159	broad.mit.edu	37	11	124180299	124180299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr11:124180299G>A	uc010sag.1	-	1	364	c.364C>T	c.(364-366)CGC>TGC	p.R122C		NM_001002917	NP_001002917	Q8WZ84	OR8D1_HUMAN	olfactory receptor, family 8, subfamily D,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		GCAACATAGCGATCATATGCC	0.488													9	10					0	0	0.004482	0	0
SLC6A13	6540	broad.mit.edu	37	12	369215	369215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:369215C>T	uc001qic.1	-	2	57	c.4G>A	c.(4-6)GAT>AAT	p.D2N	SLC6A13_uc009zdj.1_Missense_Mutation_p.D2N|SLC6A13_uc010sdl.1_Missense_Mutation_p.D2N|SLC6A13_uc001qid.1_Missense_Mutation_p.D2N	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	2	Cytoplasmic (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			ACCCTGCTATCCATCCCACCT	0.507													60	69					0	0	0.014410	0	0
C1R	715	broad.mit.edu	37	12	7242311	7242311	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:7242311G>A	uc010sfy.1	-	4	502	c.443C>T	c.(442-444)TCC>TTC	p.S148F	C1R_uc010sfz.1_Missense_Mutation_p.S162F|C1R_uc010sga.1_Missense_Mutation_p.S114F	NM_001733	NP_001724	P00736	C1R_HUMAN	complement component 1, r subcomponent	148	EGF-like; calcium-binding (Potential).				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity				0					Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TTTGCTCCGGGAAGCACATTC	0.557													17	23					0	0	0.004990	0	0
CD163	9332	broad.mit.edu	37	12	7635276	7635276	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:7635276G>A	uc001qsz.3	-	14	3338	c.3210C>T	c.(3208-3210)TTC>TTT	p.F1070F	CD163_uc001qta.3_Silent_p.F1070F|CD163_uc009zfw.2_Silent_p.F1103F	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	1070	Helical; (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						TTTTAGTCAAGAAGAATAATG	0.423													61	88					0	0	0.014410	0	0
FAM90A1	55138	broad.mit.edu	37	12	8375235	8375235	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:8375235G>A	uc001qui.2	-	7	1137	c.578C>T	c.(577-579)TCC>TTC	p.S193F	FAM90A1_uc001quh.2_Missense_Mutation_p.S193F	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	193							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		ACTTGAGGAGGAGCTCAGACT	0.597													36	43					0	0	0.006999	0	0
PHC1	1911	broad.mit.edu	37	12	9072355	9072355	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:9072355C>T	uc001qvd.2	+	3	274	c.118C>T	c.(118-120)CTG>TTG	p.L40L	PHC1_uc001qvc.1_Intron|PHC1_uc010sgn.1_Silent_p.L40L|PHC1_uc001qve.2_Silent_p.L40L	NM_004426	NP_004417	P78364	PHC1_HUMAN	polyhomeotic 1-like	40					multicellular organismal development	PcG protein complex	DNA binding|zinc ion binding			ovary(1)|breast(1)	2						TTCCTAGGCTCTGCAAGCACT	0.502													17	24					0	0	0.014323	0	0
PHC1	1911	broad.mit.edu	37	12	9086523	9086523	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:9086523C>T	uc001qvd.2	+	9	2112	c.1956C>T	c.(1954-1956)GTC>GTT	p.V652V	PHC1_uc010sgn.1_3'UTR|PHC1_uc001qve.2_Silent_p.V652V	NM_004426	NP_004417	P78364	PHC1_HUMAN	polyhomeotic 1-like	652					multicellular organismal development	PcG protein complex	DNA binding|zinc ion binding			ovary(1)|breast(1)	2						GAGATGATGTCTCCACATTGG	0.468													26	27					0	0	0.004656	0	0
A2M	2	broad.mit.edu	37	12	9248254	9248254	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:9248254C>T	uc001qvk.1	-	16	2007	c.1894G>A	c.(1894-1896)GGG>AGG	p.G632R	A2M_uc009zgk.1_Missense_Mutation_p.G482R	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	632					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	TTCAAAGGCCCAGGGAAGCCA	0.358													54	59					0	0	0.014410	0	0
A2M	2	broad.mit.edu	37	12	9265130	9265130	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:9265130G>A	uc001qvk.1	-	3	386	c.273C>T	c.(271-273)GTC>GTT	p.V91V	A2M_uc009zgk.1_Intron	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	91					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	AAGACTTTGGGACCTGAAATA	0.493													6	36					0	0	0.001984	0	0
A2M	2	broad.mit.edu	37	12	9266120	9266120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:9266120G>A	uc001qvk.1	-	2	219	c.106C>T	c.(106-108)CCC>TCC	p.P36S	A2M_uc009zgk.1_5'UTR	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	36					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	AGCAGGGAGGGGACCAGAACC	0.493													14	96					0	0	0.002450	0	0
PRR4	11272	broad.mit.edu	37	12	10999753	10999753	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:10999753G>T	uc001qyz.3	-	3	353	c.314C>A	c.(313-315)CCC>CAC	p.P105H	PRR4_uc009zhp.2_Missense_Mutation_p.P118H|PRH1_uc001qzb.3_RNA|PRR4_uc001qza.3_Intron	NM_007244	NP_009175	Q16378	PROL4_HUMAN	proline rich 4 (lacrimal) isoform 2	105					visual perception	extracellular space					0						AGGAAATCGGGGTAGAGAGAG	0.537													92	120					2.41567e-30	2.71894e-30	0.014410	1	0
ETV6	2120	broad.mit.edu	37	12	12022615	12022615	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:12022615G>A	uc001qzz.2	+	5	995	c.721G>A	c.(721-723)GAG>AAG	p.E241K	ETV6_uc001raa.1_Missense_Mutation_p.E34K	NM_001987	NP_001978	P41212	ETV6_HUMAN	ets variant 6	241						cytoplasm|nucleolus	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		ETV6/NTRK3(234)|ETV6/JAK2(11)	soft_tissue(85)|kidney(66)|breast(55)|salivary_gland(26)|haematopoietic_and_lymphoid_tissue(13)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)|pancreas(1)	250		all_cancers(2;1.88e-12)|Acute lymphoblastic leukemia(2;6.91e-39)|all_hematologic(2;2.7e-36)				GTCTCCCATGGAGAATAATCA	0.637			T	NTRK3|RUNX1|PDGFRB|ABL1|MN1|ABL2|FACL6|CHIC2|ARNT|JAK2|EVI1|CDX2|STL|HLXB9|MDS2|PER1|SYK|TTL|FGFR3|PAX5	congenital fibrosarcoma|multiple leukemia and lymphoma| secretory breast|MDS|ALL								31	84					0	0	0.012213	0	0
SLCO1B1	10599	broad.mit.edu	37	12	21329726	21329726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:21329726G>A	uc001req.3	+	5	480	c.376G>A	c.(376-378)GAA>AAA	p.E126K		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	126	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	GTATTCTAAAGAAACTAATAT	0.303													18	38					0	0	0.007413	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21427461	21427461	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:21427461C>T	uc001rer.2	-	13	1986	c.1735G>A	c.(1735-1737)GGA>AGA	p.G579R	SLCO1A2_uc001res.2_Missense_Mutation_p.G579R|SLCO1A2_uc010siq.1_Missense_Mutation_p.G447R|SLCO1A2_uc010sio.1_Missense_Mutation_p.G447R|SLCO1A2_uc010sip.1_Missense_Mutation_p.G447R	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	579	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						TTCAAAGTTCCCCAGTGTAAA	0.358													34	51					0	0	0.013726	0	0
ABCC9	10060	broad.mit.edu	37	12	21971126	21971126	+	Silent	SNP	C	T	T	rs140182559	byFrequency	TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:21971126C>T	uc001rfi.1	-	30	3749	c.3729G>A	c.(3727-3729)TCG>TCA	p.S1243S	ABCC9_uc001rfh.2_Silent_p.S1243S|ABCC9_uc001rfj.1_Silent_p.S1207S	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1243	Extracellular (Potential).|ABC transmembrane type-1 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	ATCCAGAATTCGAAGACCCAC	0.323													76	125					0	0	0.014410	0	0
KIAA0528	9847	broad.mit.edu	37	12	22659723	22659723	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:22659723G>A	uc001rfq.2	-	10	1297	c.1069C>T	c.(1069-1071)CCT>TCT	p.P357S	KIAA0528_uc010sir.1_Missense_Mutation_p.P150S|KIAA0528_uc010sis.1_Missense_Mutation_p.P357S|KIAA0528_uc010sit.1_Missense_Mutation_p.P359S|KIAA0528_uc010siu.1_Missense_Mutation_p.P357S|KIAA0528_uc001rfr.2_Missense_Mutation_p.P348S|KIAA0528_uc009ziy.1_Missense_Mutation_p.P359S	NM_014802	NP_055617	Q86YS7	K0528_HUMAN	hypothetical protein LOC9847	357							protein binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						AATCCAGGAGGAAATGCCGTC	0.368													27	105					0	0	0.004656	0	0
IPO8	10526	broad.mit.edu	37	12	30833476	30833476	+	Silent	SNP	G	A	A	rs112676658		TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:30833476G>A	uc001rjd.2	-	5	749	c.579C>T	c.(577-579)TCC>TCT	p.S193S		NM_006390	NP_006381	O15397	IPO8_HUMAN	importin 8	193					intracellular protein transport|signal transduction	cytoplasm|nucleus	protein transporter activity|Ran GTPase binding			skin(2)|central_nervous_system(1)	3	all_lung(12;6.66e-10)|Lung NSC(12;4.84e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					AATAATAGGAGGAATCAGGAA	0.358													28	106					0	0	0.009535	0	0
LRRK2	120892	broad.mit.edu	37	12	40689422	40689422	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:40689422G>A	uc001rmg.3	+	23	3193	c.3072G>A	c.(3070-3072)ACG>ACA	p.T1024T	LRRK2_uc001rmh.1_Silent_p.T646T|LRRK2_uc009zjw.2_5'UTR	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	1024	LRR 2.				activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				ATGCACTCACGAGCTTTCCAC	0.343													17	23					0	0	0.008871	0	0
SLC38A1	81539	broad.mit.edu	37	12	46591720	46591720	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:46591720C>T	uc001rpa.2	-	15	1504	c.1246G>A	c.(1246-1248)GAT>AAT	p.D416N	SLC38A1_uc001rpb.2_Missense_Mutation_p.D416N|SLC38A1_uc001rpc.2_Missense_Mutation_p.D416N|SLC38A1_uc001rpd.2_Missense_Mutation_p.D416N|SLC38A1_uc001rpe.2_Missense_Mutation_p.D416N|SLC38A1_uc009zkj.1_Missense_Mutation_p.D416N	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	416	Extracellular (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			CCAAAAATATCCTTCATGGAG	0.383													19	21					0	0	0.010504	0	0
RND1	27289	broad.mit.edu	37	12	49254822	49254822	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:49254822C>T	uc001rsn.2	-	4	514	c.411G>A	c.(409-411)ATG>ATA	p.M137I		NM_014470	NP_055285	Q92730	RND1_HUMAN	GTP-binding protein RHO6 precursor	137					actin filament organization|axon guidance|negative regulation of cell adhesion|neuron remodeling|small GTPase mediated signal transduction	adherens junction|cytoskeleton|cytosol	GTP binding|GTPase activity|receptor binding			ovary(1)	1						GGGACAGCTCCATCAGAGTAC	0.562													47	67					0	0	0.014410	0	0
LARP4	113251	broad.mit.edu	37	12	50854978	50854978	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:50854978C>T	uc001rwp.1	+	11	1326	c.1182C>T	c.(1180-1182)TCC>TCT	p.S394S	LARP4_uc001rwo.1_Silent_p.S400S|LARP4_uc001rwq.1_Silent_p.S323S|LARP4_uc001rwr.1_Intron|LARP4_uc001rws.1_Silent_p.S393S|LARP4_uc009zlr.1_Silent_p.S213S|LARP4_uc001rwt.1_Intron|LARP4_uc001rwm.2_Silent_p.S394S|LARP4_uc001rwn.2_Silent_p.S324S	NM_052879	NP_443111	Q71RC2	LARP4_HUMAN	c-Mpl binding protein isoform a	394							nucleotide binding|RNA binding			ovary(1)	1						GCTCTGTATCCTTGGGGGATG	0.433													52	81					0	0	0.014410	0	0
DIP2B	57609	broad.mit.edu	37	12	51072514	51072514	+	Silent	SNP	T	C	C	rs139194622		TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:51072514T>C	uc001rwv.2	+	8	1125	c.969T>C	c.(967-969)CCT>CCC	p.P323P	DIP2B_uc001rwu.2_Silent_p.P323P|DIP2B_uc009zls.1_Silent_p.P205P	NM_173602	NP_775873	Q9P265	DIP2B_HUMAN	DIP2 disco-interacting protein 2 homolog B	323						nucleus	catalytic activity|transcription factor binding			ovary(4)|breast(1)|pancreas(1)	6						AGATGACCCCTGTGAAAGGAG	0.527													3	102					0	0	0.004672	0	0
NR4A1	3164	broad.mit.edu	37	12	52450363	52450363	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:52450363C>T	uc001rzs.2	+	5	1406	c.1092C>T	c.(1090-1092)CTC>CTT	p.L364L	NR4A1_uc010sno.1_Silent_p.L377L|NR4A1_uc001rzt.2_Silent_p.L364L|NR4A1_uc009zmc.2_Missense_Mutation_p.S7F	NM_002135	NP_002126	P22736	NR4A1_HUMAN	nuclear receptor subfamily 4, group A, member 1	364					nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor		steroid hormone receptor activity|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(357;0.0967)		CTGCCAATCTCCTCACTTCCC	0.627													58	66					0	0	0.014410	0	0
KRT79	338785	broad.mit.edu	37	12	53227863	53227863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:53227863C>T	uc001sbb.2	-	1	215	c.182G>A	c.(181-183)AGC>AAC	p.S61N		NM_175834	NP_787028	Q5XKE5	K2C79_HUMAN	keratin 6L	61	Head.					keratin filament	structural molecule activity			ovary(2)|skin(2)	4						GTTATAGAGGCTTCGGCTGCC	0.662													39	41					0	0	0.006230	0	0
SMARCC2	6601	broad.mit.edu	37	12	56561897	56561897	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:56561897T>C	uc001skb.2	-	25	2810	c.2704A>G	c.(2704-2706)AAA>GAA	p.K902E	SMARCC2_uc001skd.2_Missense_Mutation_p.K933E|SMARCC2_uc001ska.2_Missense_Mutation_p.K933E|SMARCC2_uc001skc.2_Missense_Mutation_p.K932E|SMARCC2_uc010sqf.1_Missense_Mutation_p.K822E	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	902					chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			TGCCGAAGTTTGATCTCCAAC	0.547													44	52					0	0	0.011902	0	0
NAB2	4665	broad.mit.edu	37	12	57485457	57485457	+	Silent	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:57485457T>C	uc001smz.2	+	2	1011	c.633T>C	c.(631-633)CCT>CCC	p.P211P		NM_005967	NP_005958	Q15742	NAB2_HUMAN	NGFI-A binding protein 2	211					cell proliferation|negative regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	nucleus	transcription corepressor activity			upper_aerodigestive_tract(1)|ovary(1)	2						TCTCCCCCCCTGCAGGGGGAG	0.711													8	51					0	0	0.006214	0	0
STAT6	6778	broad.mit.edu	37	12	57502002	57502002	+	Silent	SNP	G	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:57502002G>C	uc009zpe.2	-	2	311	c.60C>G	c.(58-60)GTC>GTG	p.V20V	STAT6_uc009zpf.2_Silent_p.V20V|STAT6_uc001sna.2_Silent_p.V20V|STAT6_uc010srb.1_Intron|STAT6_uc010src.1_5'UTR|STAT6_uc010srd.1_Intron|STAT6_uc009zpg.2_Silent_p.V69V	NM_003153	NP_003144	P42226	STAT6_HUMAN	signal transducer and activator of transcription	20					regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4						GGGGAAAGTCGACATAGAGCC	0.577													5	20					0	0	0.001984	0	0
INHBE	83729	broad.mit.edu	37	12	57850391	57850391	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:57850391C>T	uc001snw.2	+	2	1037	c.813C>T	c.(811-813)TAC>TAT	p.Y271Y		NM_031479	NP_113667	P58166	INHBE_HUMAN	activin beta E precursor	271					growth	extracellular region	growth factor activity|hormone activity			breast(2)|central_nervous_system(1)	3						CCGAGGGGTACCAGCTGAATT	0.602											OREG0021944	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	72					0	0	0.004656	0	0
INHBE	83729	broad.mit.edu	37	12	57850536	57850536	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:57850536C>T	uc001snw.2	+	2	1182	c.958C>T	c.(958-960)CGA>TGA	p.R320*		NM_031479	NP_113667	P58166	INHBE_HUMAN	activin beta E precursor	320					growth	extracellular region	growth factor activity|hormone activity			breast(2)|central_nervous_system(1)	3						CCCTACTGCCCGAAGGCCCCT	0.562											OREG0021944	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	62					0	0	0.010818	0	0
KIF5A	3798	broad.mit.edu	37	12	57962771	57962772	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:57962771_57962772CC>TT	uc001sor.1	+	9	948_949	c.740_741CC>TT	c.(739-741)GCC>GTT	p.A247V	KIF5A_uc010srr.1_Missense_Mutation_p.A158V	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	247	Kinesin-motor.|Microtubule-binding.				blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						GCAGAGGGAGCCGTGCTGGACG	0.564													7	29					0	0	0.004672	0	0
TMEM5	10329	broad.mit.edu	37	12	64202862	64202862	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:64202862A>G	uc001srq.1	+	6	1426	c.1322A>G	c.(1321-1323)AAT>AGT	p.N441S	TMEM5_uc001srr.1_Missense_Mutation_p.N338S|TMEM5_uc001srs.1_Missense_Mutation_p.N181S	NM_014254	NP_055069	Q9Y2B1	TMEM5_HUMAN	transmembrane protein 5	441	Extracellular (Potential).					integral to plasma membrane					0		Myeloproliferative disorder(1001;0.0255)	BRCA - Breast invasive adenocarcinoma(9;0.0985)	GBM - Glioblastoma multiforme(28;9e-08)|BRCA - Breast invasive adenocarcinoma(357;0.000175)		TTAATGAATAATAAAAGTTAA	0.254													6	7					0	0	0.001168	0	0
C12orf56	115749	broad.mit.edu	37	12	64668753	64668754	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:64668753_64668754TC>AT	uc001ssa.3	-	9	1031_1032	c.1031_1032GA>AT	c.(1030-1032)GGA>GAT	p.G344D	uc001srx.2_Intron|C12orf56_uc001sry.2_Missense_Mutation_p.G86D|C12orf56_uc001srz.2_5'UTR	NM_001099676	NP_001093146	Q8IXR9	CL056_HUMAN	hypothetical protein LOC115749	507											0			GBM - Glioblastoma multiforme(3;0.000582)	GBM - Glioblastoma multiforme(28;0.0259)		ATCCGAGATTTCCCTAAAAGAC	0.327													31	59					0	0	0.004672	0	0
DYRK2	8445	broad.mit.edu	37	12	68051037	68051037	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:68051037C>G	uc001str.3	+	3	752	c.350C>G	c.(349-351)ACG>AGG	p.T117R	DYRK2_uc001sts.3_Missense_Mutation_p.T44R	NM_006482	NP_006473	Q92630	DYRK2_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	117					apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|positive regulation of glycogen biosynthetic process|smoothened signaling pathway	cytoplasm|nucleus	ATP binding|magnesium ion binding|manganese ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(2)|breast(1)|central_nervous_system(1)	4			Lung(24;6.81e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(7;0.000573)		GTGGGCAAAACGGGCTTGCCA	0.537													14	35					0	0	0.002450	0	0
PTPRB	5787	broad.mit.edu	37	12	70928359	70928359	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:70928359C>T	uc001swb.3	-	29	5653	c.5623G>A	c.(5623-5625)GAA>AAA	p.E1875K	uc001svz.2_Intron|PTPRB_uc010sto.1_Missense_Mutation_p.E1785K|PTPRB_uc010stp.1_Missense_Mutation_p.E1785K|PTPRB_uc001swc.3_Missense_Mutation_p.E2093K|PTPRB_uc001swa.3_Missense_Mutation_p.E2005K	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1875	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TGGGTGGTTTCTGGGACTCCA	0.532													10	11					0	0	0.013537	0	0
PTPRB	5787	broad.mit.edu	37	12	70953309	70953309	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:70953309C>T	uc001swb.3	-	16	3904	c.3874G>A	c.(3874-3876)GAC>AAC	p.D1292N	PTPRB_uc010sto.1_Missense_Mutation_p.D1202N|PTPRB_uc010stp.1_Missense_Mutation_p.D1202N|PTPRB_uc001swc.3_Missense_Mutation_p.D1510N|PTPRB_uc001swa.3_Missense_Mutation_p.D1422N|PTPRB_uc001swd.3_Missense_Mutation_p.D1509N|PTPRB_uc009zrr.1_Missense_Mutation_p.D1389N	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1292	Fibronectin type-III 15.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			AGCTCAAAGTCGTTGTAGTCT	0.498													70	114					0	0	0.014410	0	0
PHLDA1	22822	broad.mit.edu	37	12	76425374	76425374	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:76425374G>C	uc001sxu.2	-	1	183	c.148C>G	c.(148-150)CCC>GCC	p.P50A		NM_007350	NP_031376	Q8WV24	PHLA1_HUMAN	pleckstrin homology-like domain, family A,	50					apoptosis	cytoplasmic vesicle membrane|nucleolus|plasma membrane	protein binding				0		Colorectal(145;0.09)				TCACTGAAGGGCACTGGCCGG	0.721													4	7					0	0	0.009096	0	0
CCDC59	29080	broad.mit.edu	37	12	82751030	82751030	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:82751030C>T	uc001szp.3	-	2	217	c.173G>A	c.(172-174)CGA>CAA	p.R58Q	C12orf26_uc001szq.2_5'Flank	NM_014167	NP_054886	Q9P031	TAP26_HUMAN	coiled-coil domain containing 59	58					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding				0						CAGTTTTCTTCGAAAAGCAAA	0.358													20	27					0	0	0.010504	0	0
LUM	4060	broad.mit.edu	37	12	91502014	91502014	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:91502014C>T	uc001tbm.2	-	2	1132	c.743G>A	c.(742-744)GGA>GAA	p.G248E	LUM_uc001tbn.2_RNA	NM_002345	NP_002336	P51884	LUM_HUMAN	lumican precursor	248	LRR 8.				collagen fibril organization|visual perception	extracellular space|fibrillar collagen	collagen binding|extracellular matrix structural constituent			central_nervous_system(2)	2						GAAAGAATTTCCAGGTATTCC	0.383													39	45					0	0	0.007835	0	0
NR1H4	9971	broad.mit.edu	37	12	100928794	100928794	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:100928794C>T	uc001tht.1	+	4	783	c.755C>T	c.(754-756)TCA>TTA	p.S252L	NR1H4_uc001thp.1_Missense_Mutation_p.S238L|NR1H4_uc001thq.1_Missense_Mutation_p.S242L|NR1H4_uc010svj.1_RNA|NR1H4_uc001thr.1_Missense_Mutation_p.S242L|NR1H4_uc010svk.1_Missense_Mutation_p.S191L|NR1H4_uc001ths.1_Missense_Mutation_p.S248L	NM_005123	NP_005114	Q96RI1	NR1H4_HUMAN	nuclear receptor subfamily 1, group H, member 4	252					bile acid metabolic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						ACAACAAAGTCATGCAGGGTA	0.463													28	18					0	0	0.010818	0	0
APPL2	55198	broad.mit.edu	37	12	105568156	105568156	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:105568156T>C	uc001tlf.1	-	21	2149	c.1931A>G	c.(1930-1932)AAC>AGC	p.N644S	APPL2_uc010swt.1_Missense_Mutation_p.N601S|APPL2_uc001tlg.1_Missense_Mutation_p.N398S|APPL2_uc010swu.1_Missense_Mutation_p.N650S	NM_018171	NP_060641	Q8NEU8	DP13B_HUMAN	adaptor protein, phosphotyrosine interaction, PH	644					cell cycle|cell proliferation|signal transduction	early endosome membrane|nucleus	protein binding			upper_aerodigestive_tract(1)	1						TGGTTGATCGTTTAACAGTAC	0.438													31	38					0	0	0.007291	0	0
HVCN1	84329	broad.mit.edu	37	12	111099079	111099079	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:111099079C>T	uc001trs.1	-	4	361	c.196G>A	c.(196-198)GAA>AAA	p.E66K	HVCN1_uc001trq.1_Missense_Mutation_p.E66K|HVCN1_uc001trt.1_Missense_Mutation_p.E66K|HVCN1_uc010syd.1_Missense_Mutation_p.E46K	NM_032369	NP_115745	Q96D96	HVCN1_HUMAN	hydrogen voltage-gated channel 1	66	Cytoplasmic (Potential).				response to pH|response to zinc ion	integral to membrane	voltage-gated proton channel activity			skin(1)	1						GCTCTGCCTTCCTCGCCTGAG	0.517													33	32					0	0	0.004289	0	0
CUX2	23316	broad.mit.edu	37	12	111779803	111779803	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:111779803C>T	uc001tsa.1	+	21	3758	c.3605C>T	c.(3604-3606)TCC>TTC	p.S1202F		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1202	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GAGCTCCTCTCCTTCCAGCTC	0.607													44	45					0	0	0.013114	0	0
C12orf51	283450	broad.mit.edu	37	12	112616865	112616865	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:112616865G>A	uc009zwc.2	-	57	9985	c.9967C>T	c.(9967-9969)CCA>TCA	p.P3323S		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						TTGGGCTTTGGCACGCCATAC	0.642													9	27					0	0	0.008291	0	0
OAS1	4938	broad.mit.edu	37	12	113344864	113344864	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:113344864C>T	uc001tud.2	+	1	126	c.20C>T	c.(19-21)ACC>ATC	p.T7I	OAS1_uc010syn.1_Missense_Mutation_p.T6I|OAS1_uc010syo.1_Missense_Mutation_p.T6I|OAS1_uc001tub.2_Missense_Mutation_p.T7I|OAS1_uc001tuc.2_Missense_Mutation_p.T7I|OAS1_uc009zwf.2_Missense_Mutation_p.T6I	NM_016816	NP_058132	P00973	OAS1_HUMAN	2',5'-oligoadenylate synthetase 1 isoform 1	7					interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(2)	2						CTCAGAAATACCCCAGCCAAA	0.473													30	63					0	0	0.003271	0	0
KSR2	283455	broad.mit.edu	37	12	117962911	117962911	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:117962911G>A	uc001two.2	-	14	1933	c.1878C>T	c.(1876-1878)TTC>TTT	p.F626F		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	655					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					ACTCCTGAAGGAAGATGCTGG	0.607													30	39					0	0	0.003271	0	0
KDM2B	84678	broad.mit.edu	37	12	121947408	121947409	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:121947408_121947409CC>TT	uc001uat.2	-	11	1712_1713	c.1608_1609GG>AA	c.(1606-1611)GAGGGC>GAAAGC	p.G537S	KDM2B_uc001uar.2_Missense_Mutation_p.G128S|KDM2B_uc001uas.2_Missense_Mutation_p.G506S|KDM2B_uc001uau.2_Missense_Mutation_p.G420S|KDM2B_uc001uav.3_Missense_Mutation_p.G447S	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	537					embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						TCCTCGATGCCCTCGGGGACAC	0.629													24	41					0	0	0.004672	0	0
CCDC62	84660	broad.mit.edu	37	12	123286060	123286060	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:123286060C>T	uc001udc.2	+	9	1512	c.1367C>T	c.(1366-1368)TCT>TTT	p.S456F	CCDC62_uc010tah.1_RNA|CCDC62_uc001udf.2_Missense_Mutation_p.S456F|CCDC62_uc001ude.2_Missense_Mutation_p.S217F	NM_201435	NP_958843	Q6P9F0	CCD62_HUMAN	coiled-coil domain containing 62 isoform b	456						cytoplasm|nucleus				ovary(2)|large_intestine(1)|pancreas(1)|skin(1)	5	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.51e-06)|Epithelial(86;2.65e-05)|BRCA - Breast invasive adenocarcinoma(302;0.206)		CCCACTTTATCTGATGAGAAG	0.428													23	23					0	0	0.004656	0	0
LOC284232	284232	broad.mit.edu	37	13	19428836	19428836	+	RNA	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr13:19428836C>T	uc010tcj.1	-	1		c.17274G>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						acctcggcctcccaaagtgct	0.09													9	15					0	0	0.004482	0	0
XPO4	64328	broad.mit.edu	37	13	21362747	21362747	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr13:21362747G>A	uc001unq.3	-	20	2961	c.2925C>T	c.(2923-2925)ACC>ACT	p.T975T		NM_022459	NP_071904	Q9C0E2	XPO4_HUMAN	exportin 4	975					protein transport	cytoplasm|nucleus	protein binding			large_intestine(1)|ovary(1)|kidney(1)	3		all_cancers(29;5.05e-24)|all_epithelial(30;5.56e-20)|all_lung(29;2.38e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000521)|Epithelial(112;0.000892)|OV - Ovarian serous cystadenocarcinoma(117;0.0148)|Lung(94;0.0189)|LUSC - Lung squamous cell carcinoma(192;0.0548)		GATTACAAAGGGTTGGAAACT	0.299													20	87					0	0	0.002780	0	0
HSPH1	10808	broad.mit.edu	37	13	31722162	31722162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr13:31722162C>T	uc001utj.2	-	10	1710	c.1312G>A	c.(1312-1314)GGG>AGG	p.G438R	HSPH1_uc001utk.2_Missense_Mutation_p.G438R|HSPH1_uc010aaw.2_Missense_Mutation_p.G397R|HSPH1_uc001utl.2_Missense_Mutation_p.G440R|HSPH1_uc010tds.1_Missense_Mutation_p.G362R	NM_006644	NP_006635	Q92598	HS105_HUMAN	heat shock 105kD	438					positive regulation of MHC class I biosynthetic process|positive regulation of NK T cell activation|response to unfolded protein	cytoplasm|extracellular region	ATP binding				0		Lung SC(185;0.0257)		all cancers(112;0.00385)|Epithelial(112;0.0328)|OV - Ovarian serous cystadenocarcinoma(117;0.0375)|GBM - Glioblastoma multiforme(144;0.125)		TCAAAAGGCCCCCTTCTCAGA	0.398													99	131					0	0	0.014410	0	0
RXFP2	122042	broad.mit.edu	37	13	32371395	32371395	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr13:32371395C>T	uc001utt.2	+	17	1915	c.1844C>T	c.(1843-1845)TCC>TTC	p.S615F	RXFP2_uc010aba.2_Missense_Mutation_p.S574F	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	615	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		ATGTTCTGTTCCATTCAAAAA	0.398													30	53					0	0	0.003271	0	0
KL	9365	broad.mit.edu	37	13	33629429	33629429	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr13:33629429G>A	uc001uus.2	+	3	1584	c.1576G>A	c.(1576-1578)GGA>AGA	p.G526R	KL_uc001uur.1_Missense_Mutation_p.G219R	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	526	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		CTTTGCTTGGGGAGTTGTTGA	0.448													31	59					0	0	0.009535	0	0
ALG5	29880	broad.mit.edu	37	13	37567800	37567800	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr13:37567800G>A	uc001uvy.2	-	4	362	c.295C>T	c.(295-297)CCT>TCT	p.P99S	ALG5_uc010teq.1_Intron|ALG5_uc010ter.1_RNA	NM_013338	NP_037470	Q9Y673	ALG5_HUMAN	dolichyl-phosphate beta-glucosyltransferase	99	Lumenal (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate beta-glucosyltransferase activity|oligosaccharyl transferase activity				0		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)		all cancers(112;5.79e-07)|Epithelial(112;1.81e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00785)|BRCA - Breast invasive adenocarcinoma(63;0.0127)|GBM - Glioblastoma multiforme(144;0.0472)		GTGAACGCAGGATCTCGTTTC	0.313													45	56					0	0	0.014410	0	0
MTRF1	9617	broad.mit.edu	37	13	41797453	41797453	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr13:41797453T>A	uc001uxx.2	-	11	1633	c.1163A>T	c.(1162-1164)TAT>TTT	p.Y388F	MTRF1_uc001uxy.2_Missense_Mutation_p.Y388F|MTRF1_uc001uxz.2_Missense_Mutation_p.Y224F|MTRF1_uc010tff.1_Missense_Mutation_p.Y401F|uc001uxv.1_Intron	NM_004294	NP_004285	O75570	RF1M_HUMAN	mitochondrial translational release factor 1	388					regulation of translational termination	mitochondrion	translation release factor activity, codon specific				0		Lung NSC(96;4.52e-06)|Breast(139;0.00123)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)|Ovarian(182;0.125)		OV - Ovarian serous cystadenocarcinoma(117;4.24e-10)|all cancers(112;2.05e-09)|Epithelial(112;2.48e-09)|GBM - Glioblastoma multiforme(144;0.00115)|BRCA - Breast invasive adenocarcinoma(63;0.0721)|KIRC - Kidney renal clear cell carcinoma(186;0.248)		GGTGAAATTATATGTCCGAAT	0.368													49	132					0	0	0.014410	0	0
RCBTB2	1102	broad.mit.edu	37	13	49086897	49086897	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr13:49086897A>G	uc001vch.2	-	7	855	c.484T>C	c.(484-486)TAC>CAC	p.Y162H	RCBTB2_uc010tgg.1_Missense_Mutation_p.Y167H|RCBTB2_uc001vci.2_Missense_Mutation_p.Y138H|RCBTB2_uc010tgh.1_Intron|RCBTB2_uc001vcj.2_Missense_Mutation_p.Y166H|RCBTB2_uc010acv.1_RNA|RCBTB2_uc010tgi.1_Missense_Mutation_p.Y138H	NM_001268	NP_001259	O95199	RCBT2_HUMAN	regulator of chromosome condensation and BTB	162	RCC1 2.						Ran guanyl-nucleotide exchange factor activity			ovary(2)|lung(2)|skin(1)	5		all_cancers(8;4.86e-71)|all_epithelial(8;2.11e-22)|Acute lymphoblastic leukemia(8;1.1e-21)|all_hematologic(8;2.3e-21)|all_lung(13;2.3e-10)|Lung NSC(96;1.07e-07)|Breast(56;1.53e-05)|Prostate(109;0.00174)|Hepatocellular(98;0.00826)|Myeloproliferative disorder(33;0.0179)|all_neural(104;0.0227)|Glioma(44;0.0286)|Lung SC(185;0.0301)		GBM - Glioblastoma multiforme(99;1.8e-09)|LUSC - Lung squamous cell carcinoma(3;0.116)		AAAGAATGGTAAGACCCACAG	0.398													31	47					0	0	0.013726	0	0
UTP14C	9724	broad.mit.edu	37	13	52603485	52603485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr13:52603485C>T	uc001vgb.2	+	2	1080	c.545C>T	c.(544-546)CCC>CTC	p.P182L	UTP14C_uc001vga.2_3'UTR|UTP14C_uc001vgc.2_RNA	NM_021645	NP_067677	Q5TAP6	UT14C_HUMAN	UTP14, U3 small nucleolar ribonucleoprotein,	182					cell differentiation|meiosis|multicellular organismal development|rRNA processing|spermatogenesis	nucleolus|small-subunit processome				ovary(3)|large_intestine(1)|breast(1)	5		Breast(56;0.00173)|Lung NSC(96;0.0108)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;2.3e-08)		GCAAGAACTCCCCTGGAGCAG	0.532													40	57					0	0	0.006230	0	0
PCDH17	27253	broad.mit.edu	37	13	58208628	58208628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr13:58208628C>T	uc001vhq.1	+	1	2840	c.1948C>T	c.(1948-1950)CCT>TCT	p.P650S	PCDH17_uc010aec.1_Missense_Mutation_p.P650S	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	650	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		CACGCTGCACCCTTTCTGGGA	0.647													59	105					0	0	0.014410	0	0
TBC1D4	9882	broad.mit.edu	37	13	75863150	75863150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr13:75863150C>T	uc001vjl.1	-	20	3930	c.3583G>A	c.(3583-3585)GAT>AAT	p.D1195N	TBC1D4_uc010tht.1_Missense_Mutation_p.D405N|TBC1D4_uc010thu.1_Missense_Mutation_p.D352N|TBC1D4_uc010aer.2_Missense_Mutation_p.D1187N|TBC1D4_uc010aes.2_Missense_Mutation_p.D1132N	NM_014832	NP_055647	O60343	TBCD4_HUMAN	TBC1 domain family, member 4	1195						cytoplasm	Rab GTPase activator activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Prostate(6;0.014)|Breast(118;0.0982)		GBM - Glioblastoma multiforme(99;0.0116)		GTTTCACTATCCTCACAGGAA	0.398													42	51					0	0	0.011902	0	0
HS6ST3	266722	broad.mit.edu	37	13	97484772	97484772	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr13:97484772G>A	uc001vmw.2	+	2	760	c.736G>A	c.(736-738)GAT>AAT	p.D246N		NM_153456	NP_703157	Q8IZP7	H6ST3_HUMAN	heparan sulfate 6-O-sulfotransferase 3	246	Lumenal (Potential).|3'-phosphate binding (Potential).					integral to membrane	sulfotransferase activity			ovary(1)|skin(1)	2	all_neural(89;0.0878)|Medulloblastoma(90;0.163)					AATGTTACGGGATCCAGTGTC	0.418													21	20					0	0	0.002780	0	0
STK24	8428	broad.mit.edu	37	13	99114116	99114116	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr13:99114116G>A	uc001vnm.1	-	8	1236	c.1001C>T	c.(1000-1002)TCT>TTT	p.S334F	STK24_uc001vnn.1_Missense_Mutation_p.S322F|STK24_uc010tim.1_Missense_Mutation_p.S303F	NM_003576	NP_003567	Q9Y6E0	STK24_HUMAN	serine/threonine kinase 24 isoform a	334					cellular component disassembly involved in apoptosis|signal transduction	cytosol|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)|lung(1)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			CCAGTCCCCAGAATCACTGCC	0.532													51	63					0	0	0.014410	0	0
ARHGEF7	8874	broad.mit.edu	37	13	111953096	111953096	+	Silent	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr13:111953096T>C	uc010tjo.1	+	18	1942	c.1890T>C	c.(1888-1890)AGT>AGC	p.S630S	ARHGEF7_uc001vrv.3_Silent_p.S555S|ARHGEF7_uc001vrw.3_Silent_p.S555S|ARHGEF7_uc001vrx.3_Silent_p.S555S	NM_003899	NP_003890	Q14155	ARHG7_HUMAN	PAK-interacting exchange factor beta isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					apoptosis|epidermal growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_lung(23;3.96e-05)|Lung NSC(43;0.00156)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.188)			TGATCCTAGGTTCACGCAAAG	0.338													51	85					0	0	0.014410	0	0
POTEG	404785	broad.mit.edu	37	14	19566060	19566060	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr14:19566060C>T	uc001vuz.1	+	6	1156	c.1104C>T	c.(1102-1104)GTC>GTT	p.V368V	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA|uc001vvb.2_Intron	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	368										ovary(1)	1						TGCTAAAAGTCTCTTCTGAAA	0.214													18	93					0	0	0.012319	0	0
OR4K5	79317	broad.mit.edu	37	14	20389033	20389033	+	Missense_Mutation	SNP	G	A	A	rs151215030		TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr14:20389033G>A	uc010tkw.1	+	1	268	c.268G>A	c.(268-270)GAG>AAG	p.E90K		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	90	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GAGTGCACACGAGACCATATC	0.428													54	134					0	0	0.014410	0	0
OR11G2	390439	broad.mit.edu	37	14	20665683	20665683	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr14:20665683C>T	uc010tlb.1	+	1	189	c.189C>T	c.(187-189)ATC>ATT	p.I63I		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	63	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		AGGGGCAGATCCTCCTCTTTG	0.552													15	37					0	0	0.002450	0	0
Unknown	0	broad.mit.edu	37	14	22205223	22205223	+	RNA	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr14:22205223C>T	uc010aio.1	+	2		c.122C>T			uc001wbp.2_Missense_Mutation_p.S96F|uc010aip.1_Intron					Homo sapiens mRNA for T cell receptor alpha variable 4, partial cds, clone: SEB 72.																		CCCCGGGTTTCCCTGAGCGAC	0.532													10	19					0	0	0.013537	0	0
OXA1L	5018	broad.mit.edu	37	14	23235902	23235902	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr14:23235902C>T	uc001wgn.2	+	1	172	c.172C>T	c.(172-174)CCG>TCG	p.P58S	OXA1L_uc010tnc.1_Missense_Mutation_p.P58S|OXA1L_uc001wgo.2_RNA|OXA1L_uc010akc.2_Missense_Mutation_p.P58S|OXA1L_uc001wgp.2_5'Flank|OXA1L_uc001wgq.2_5'Flank	NM_005015	NP_005006	Q15070	OXA1L_HUMAN	oxidase (cytochrome c) assembly 1-like	Error:Variant_position_missing_in_Q15070_after_alignment					aerobic respiration|mitochondrial proton-transporting ATP synthase complex assembly|mitochondrial respiratory chain complex I assembly|negative regulation of ATPase activity|negative regulation of oxidoreductase activity|protein insertion into membrane|protein tetramerization	integral to mitochondrial membrane|mitochondrial respiratory chain|protein complex	protein homodimerization activity|ribosome binding			central_nervous_system(1)	1	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.0096)		AAGTCCTCTTCCGGGCAAAAT	0.607													35	96					0	0	0.004878	0	0
SLC7A8	23428	broad.mit.edu	37	14	23597227	23597227	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr14:23597227C>T	uc001wiz.2	-	10	2167	c.1441_splice	c.e10+1	p.E481_splice	SLC7A8_uc001wiw.2_Splice_Site_p.E98_splice|SLC7A8_uc001wix.2_Splice_Site_p.E278_splice|SLC7A8_uc010tnk.1_Splice_Site_p.E257_splice|SLC7A8_uc010tnl.1_Splice_Site_p.E376_splice|SLC7A8_uc001wiy.2_Splice_Site|SLC7A8_uc010akj.2_Intron	NM_012244	NP_036376	Q9UHI5	LAT2_HUMAN	solute carrier family 7 (cationic amino acid						blood coagulation|cellular amino acid metabolic process|leukocyte migration|metal ion homeostasis|response to toxin	basolateral plasma membrane|cytoplasm|integral to plasma membrane	neutral amino acid transmembrane transporter activity|organic cation transmembrane transporter activity|peptide antigen binding|protein binding|toxin transporter activity			ovary(1)	1	all_cancers(95;4.6e-05)			GBM - Glioblastoma multiforme(265;0.00809)	L-Alanine(DB00160)|L-Glutamine(DB00130)|L-Phenylalanine(DB00120)	CAACAACTCACCAATGAAGTC	0.567													10	16					0	0	0.006214	0	0
RNF31	55072	broad.mit.edu	37	14	24618730	24618730	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr14:24618730C>T	uc001wmn.1	+	6	996	c.747C>T	c.(745-747)TCC>TCT	p.S249S	PSME2_uc001wmj.2_5'Flank|PSME2_uc001wmk.2_5'Flank|RNF31_uc001wml.1_Silent_p.S98S|RNF31_uc001wmm.1_Intron|RNF31_uc010alg.1_Silent_p.S64S|RNF31_uc001wmo.1_5'Flank|RNF31_uc001wmp.2_5'Flank	NM_017999	NP_060469	Q96EP0	RNF31_HUMAN	ring finger protein 31	249	Polyubiquitin-binding.				CD40 signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein linear polyubiquitination|T cell receptor signaling pathway	CD40 receptor complex|internal side of plasma membrane|LUBAC complex	ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00861)		GACACCCATCCCGTGCTCATC	0.612													37	44					0	0	0.004878	0	0
FAM179B	23116	broad.mit.edu	37	14	45497485	45497485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr14:45497485C>T	uc001wvv.2	+	10	3820	c.3611C>T	c.(3610-3612)TCC>TTC	p.S1204F	FAM179B_uc001wvw.2_Missense_Mutation_p.S1204F|FAM179B_uc010anc.2_RNA	NM_015091	NP_055906	Q9Y4F4	F179B_HUMAN	hypothetical protein LOC23116	1204							binding			skin(2)|upper_aerodigestive_tract(1)	3						GAAAAAAATTCCTGGGAACGA	0.299													27	66					0	0	0.008361	0	0
RTN1	6252	broad.mit.edu	37	14	60212874	60212874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr14:60212874C>T	uc001xen.1	-	2	776	c.567G>A	c.(565-567)ATG>ATA	p.M189I		NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	189					neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		CCTCTGCTTTCATCTGGTCCA	0.458													63	65					0	0	0.014410	0	0
SPTB	6710	broad.mit.edu	37	14	65252634	65252634	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr14:65252634G>A	uc001xht.2	-	16	3651	c.3597C>T	c.(3595-3597)TCC>TCT	p.S1199S	SPTB_uc001xhr.2_Silent_p.S1199S|SPTB_uc001xhs.2_Silent_p.S1199S|SPTB_uc001xhu.2_Silent_p.S1199S	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1199	Spectrin 9.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton	p.S1199C(1)		ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CAGCTTCCAGGGAGTCTGGGG	0.532													78	66					0	0	0.014410	0	0
SPTB	6710	broad.mit.edu	37	14	65271708	65271708	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr14:65271708C>T	uc001xht.2	-	2	303	c.249G>A	c.(247-249)CGG>CGA	p.R83R	SPTB_uc001xhr.2_Silent_p.R83R|SPTB_uc001xhs.2_Silent_p.R83R|SPTB_uc001xhu.2_Silent_p.R83R	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	83	CH 1.|Actin-binding.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		TGCGCCCATCCCGCAGGTCCT	0.587													46	22					0	0	0.014410	0	0
PAPLN	89932	broad.mit.edu	37	14	73731380	73731380	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr14:73731380G>A	uc010ttx.1	+	21	3234	c.3071G>A	c.(3070-3072)GGG>GAG	p.G1024E	PAPLN_uc001xnw.3_Missense_Mutation_p.G997E|PAPLN_uc010arl.2_RNA|PAPLN_uc010ttw.1_RNA|PAPLN_uc010tty.1_Missense_Mutation_p.G1008E|PAPLN_uc010arm.2_Missense_Mutation_p.G223E|PAPLN_uc010arn.2_Missense_Mutation_p.G224E	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	1024						proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		GGCCAAGCGGGGGCTGCTGGG	0.657													40	90					0	0	0.008740	0	0
TMEM63C	57156	broad.mit.edu	37	14	77718140	77718140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr14:77718140C>T	uc001xtf.2	+	22	2259	c.2047C>T	c.(2047-2049)CAC>TAC	p.H683Y	TMEM63C_uc010asq.1_Missense_Mutation_p.H683Y	NM_020431	NP_065164	Q9P1W3	TM63C_HUMAN	transmembrane protein 63C	683						integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0342)		AGGTTCTCTCCACGCCATCAC	0.567													26	48					0	0	0.006320	0	0
NRXN3	9369	broad.mit.edu	37	14	78710054	78710054	+	RNA	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr14:78710054C>T	uc001xum.1	+	2		c.1411C>T						Q9Y4C0	NRX3A_HUMAN	Homo sapiens mRNA for KIAA0743 protein, partial cds.						axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		GTGAGCGTCCCTGTGAAAATG	0.577													34	29					0	0	0.012213	0	0
TSHR	7253	broad.mit.edu	37	14	81610130	81610130	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr14:81610130C>T	uc001xvd.1	+	10	1884	c.1728C>T	c.(1726-1728)ACC>ACT	p.T576T		NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	576	Extracellular (Potential).				cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity			thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	ACACCGAGACCCCTCTTGCTC	0.498			Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						35	118					0	0	0.004289	0	0
CCDC88C	440193	broad.mit.edu	37	14	91739163	91739163	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr14:91739163C>T	uc010aty.2	-	30	5992	c.5893G>A	c.(5893-5895)GGA>AGA	p.G1965R	CCDC88C_uc001xzj.2_Missense_Mutation_p.G489R|CCDC88C_uc001xzi.2_Missense_Mutation_p.G415R	NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1965					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				ACCCCGTCTCCCTCTGAGAGG	0.726													11	14					0	0	0.013537	0	0
DDX24	57062	broad.mit.edu	37	14	94526797	94526797	+	Silent	SNP	G	A	A	rs150012797	byFrequency	TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr14:94526797G>A	uc001ycj.2	-	5	1659	c.1560C>T	c.(1558-1560)ATC>ATT	p.I520I	DDX24_uc010twq.1_Silent_p.I477I|DDX24_uc010twr.1_Silent_p.I270I	NM_020414	NP_065147	Q9GZR7	DDX24_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	520	Helicase ATP-binding.				RNA metabolic process	cytoplasm|nucleolus|nucleolus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|skin(1)	4		all_cancers(154;0.12)		Epithelial(152;0.114)|all cancers(159;0.19)|COAD - Colon adenocarcinoma(157;0.207)		TCTTATGAAGGATTCGAGCAG	0.468													83	24					0	0	0.014410	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102516134	102516134	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr14:102516134C>T	uc001yks.2	+	76	13763	c.13599C>T	c.(13597-13599)AGC>AGT	p.S4533S		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	4533					cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						AGGCCAACAGCTGGTCCCTGG	0.617													29	6					0	0	0.005443	0	0
ADAM6	8755	broad.mit.edu	37	14	106573654	106573654	+	RNA	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr14:106573654G>A	uc010tyt.1	-	1359		c.28951C>T								Parts of antibodies, mostly variable regions.												0						TAGCAACAAGGAAAACCCAGC	0.468													30	65					0	0	0.013726	0	0
ADAM6	8755	broad.mit.edu	37	14	106610532	106610532	+	RNA	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr14:106610532G>A	uc010tyt.1	-	1167		c.26299C>T								Parts of antibodies, mostly variable regions.												0						TACTGAAAGTGAATCCAGAGG	0.577													28	7					0	0	0.012213	0	0
ADAM6	8755	broad.mit.edu	37	14	106805449	106805449	+	RNA	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr14:106805449G>A	uc010tyt.1	-	360		c.13759C>T			uc001ysw.1_5'Flank					Parts of antibodies, mostly variable regions.												0						TACAGGTGAGGGACAGGGTCT	0.617													23	140					0	0	0.009535	0	0
Unknown	0	broad.mit.edu	37	15	20362798	20362798	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:20362798C>T	uc001yte.1	+	1	111	c.60C>T	c.(58-60)CCC>CCT	p.P20P						SubName: Full=Putative uncharacterized protein ENSP00000349734;																		ACATTGACCCCCATTACCCCA	0.498													8	22					0	0	0.008291	0	0
C15orf2	23742	broad.mit.edu	37	15	24922182	24922182	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:24922182A>G	uc001ywo.2	+	1	1642	c.1168A>G	c.(1168-1170)ACA>GCA	p.T390A		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	390	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		AGAGACCATGACAAACAGCAG	0.537													8	24					0	0	0.004482	0	0
RYR3	6263	broad.mit.edu	37	15	33925182	33925182	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:33925182C>T	uc001zhi.2	+	24	2970	c.2900C>T	c.(2899-2901)CCT>CTT	p.P967L	RYR3_uc010bar.2_Missense_Mutation_p.P967L	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	967	2.|4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		AAGCCAGCCCCTTTGGATTTG	0.368													24	70					0	0	0.008361	0	0
C15orf55	256646	broad.mit.edu	37	15	34649449	34649450	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:34649449_34649450CC>TT	uc001zif.2	+	7	3311_3312	c.3156_3157CC>TT	c.(3154-3159)TCCCAC>TCTTAC	p.H1053Y	C15orf55_uc010ucc.1_Missense_Mutation_p.H1081Y|C15orf55_uc010ucd.1_Missense_Mutation_p.H1071Y	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	1053						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		AGAGAGCATCCCACCTGCTCCC	0.564			T	BRD3|BRD4	lethal midline carcinoma								10	30					0	0	0.004672	0	0
GOLGA8A	23015	broad.mit.edu	37	15	34673702	34673702	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:34673702C>T	uc001zii.2	-	16	1831	c.1722G>A	c.(1720-1722)GAG>GAA	p.E574E	GOLGA8A_uc001zih.2_Silent_p.E430E|uc001zil.2_5'Flank	NM_181077	NP_851422	A7E2F4	GOG8A_HUMAN	golgi autoantigen, golgin subfamily a, 8A	602	Golgi-targeting domain (By similarity).					Golgi cisterna membrane					0		all_lung(180;2.78e-08)		all cancers(64;8.27e-19)|GBM - Glioblastoma multiforme(113;6.98e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0156)		GGTCCTGCATCTCACCAAGGA	0.592													12	51					0	0	0.010729	0	0
ZNF770	54989	broad.mit.edu	37	15	35274609	35274609	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:35274609G>A	uc001ziw.2	-	3	1338	c.1027C>T	c.(1027-1029)CTT>TTT	p.L343F		NM_014106	NP_054825	Q6IQ21	ZN770_HUMAN	zinc finger protein 770	343					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(122;4.59e-10)|all_lung(180;8.78e-09)		all cancers(64;1.97e-18)|GBM - Glioblastoma multiforme(113;2.11e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0643)		GCACGCTTAAGCTTGGCCAAG	0.333													4	8					0	0	0.000602	0	0
PLCB2	5330	broad.mit.edu	37	15	40599844	40599844	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:40599844G>A	uc001zld.2	-	1	331	c.30C>T	c.(28-30)CCC>CCT	p.P10P	PLCB2_uc010bbo.2_Silent_p.P10P|PLCB2_uc010ucm.1_Silent_p.P10P|PLCB2_uc001zle.3_Silent_p.P10P	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	10					activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		TCACCTTGGGGGGCAGCAGGA	0.607													19	26					0	0	0.014323	0	0
RPAP1	26015	broad.mit.edu	37	15	41819137	41819137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:41819137G>A	uc001zod.2	-	14	2000	c.1876C>T	c.(1876-1878)CGT>TGT	p.R626C	RPAP1_uc001zoc.2_5'Flank	NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	626						nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		GCCAGGACACGAAGTAGTTTC	0.572													87	61					0	0	0.014410	0	0
VPS39	23339	broad.mit.edu	37	15	42476896	42476896	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:42476896C>T	uc001zpd.2	-	9	721	c.570G>A	c.(568-570)GTG>GTA	p.V190V	VPS39_uc001zpc.2_Silent_p.V179V	NM_015289	NP_056104	Q96JC1	VPS39_HUMAN	vacuolar protein sorting 39	190	CNH.				protein transport	HOPS complex|late endosome membrane|lysosomal membrane	small GTPase regulator activity			ovary(1)|pancreas(1)|skin(1)	3		all_cancers(109;6.78e-16)|all_epithelial(112;1.81e-14)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;3.05e-06)		CCTTTCCATCCACCTATAGGA	0.493													23	65					0	0	0.003330	0	0
ZFP106	64397	broad.mit.edu	37	15	42717188	42717188	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:42717188G>A	uc001zpw.2	-	13	5300	c.4965C>T	c.(4963-4965)GGC>GGT	p.G1655G	ZFP106_uc001zpu.2_Silent_p.G753G|ZFP106_uc001zpv.2_Silent_p.G840G|ZFP106_uc001zpx.2_Silent_p.G883G	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	zinc finger protein 106 homolog	1655	WD 3.					nucleolus	zinc ion binding			central_nervous_system(2)|ovary(1)	3		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		CTGCCCGAGGGCCATGGCATT	0.473													18	44					0	0	0.012319	0	0
TP53BP1	7158	broad.mit.edu	37	15	43748831	43748832	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:43748831_43748832GG>AA	uc001zrs.2	-	12	2107_2108	c.1959_1960CC>TT	c.(1957-1962)CACCAT>CATTAT	p.H654Y	TP53BP1_uc010udp.1_Missense_Mutation_p.H654Y|TP53BP1_uc001zrq.3_Missense_Mutation_p.H659Y|TP53BP1_uc001zrr.3_Missense_Mutation_p.H659Y|TP53BP1_uc010udq.1_Missense_Mutation_p.H659Y	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	654					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		TCCTCTGGATGGTGTTCTTTAA	0.475								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					24	92					0	0	0.004672	0	0
WDR76	79968	broad.mit.edu	37	15	44153570	44153570	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:44153570C>T	uc001zti.1	+	12	1625	c.1602C>T	c.(1600-1602)CTC>CTT	p.L534L		NM_024908	NP_079184	Q9H967	WDR76_HUMAN	WD repeat domain 76	534											0		all_cancers(109;3.26e-11)|all_epithelial(112;4.82e-09)|Lung NSC(122;1.61e-06)|all_lung(180;1.5e-05)|Melanoma(134;0.0417)		all cancers(107;3.78e-21)|GBM - Glioblastoma multiforme(94;5.04e-07)		AGATTCCGCTCCTCACCACCA	0.333													13	39					0	0	0.001855	0	0
DUOX2	50506	broad.mit.edu	37	15	45399580	45399580	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:45399580G>A	uc010bea.2	-	14	1859	c.1656C>T	c.(1654-1656)CCC>CCT	p.P552P	DUOX2_uc001zun.2_Silent_p.P552P	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	552	Extracellular (Potential).|Peroxidase-like; mediates peroxidase activity (By similarity).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		GCAGGGCACTGGGGTCAATGT	0.517													18	46					0	0	0.010504	0	0
UNC13C	440279	broad.mit.edu	37	15	54542545	54542545	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:54542545C>T	uc002ack.2	+	6	3351	c.3351C>T	c.(3349-3351)CTC>CTT	p.L1117L		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1117	Phorbol-ester/DAG-type.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GTGAAGGGCTCCTGTGGGGCA	0.522													16	43					0	0	0.004007	0	0
UNC13C	440279	broad.mit.edu	37	15	54919182	54919182	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:54919182G>A	uc002ack.2	+	31	6516	c.6516G>A	c.(6514-6516)CTG>CTA	p.L2172L	UNC13C_uc002acm.2_Silent_p.L93L	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	2172					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		ATCCTCTTCTGAAAAATATCT	0.393													32	33					0	0	0.013726	0	0
CA12	771	broad.mit.edu	37	15	63631051	63631051	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:63631051C>T	uc002amc.2	-	8	997	c.841G>A	c.(841-843)GAT>AAT	p.D281N	CA12_uc002amd.2_Missense_Mutation_p.D281N|CA12_uc002ame.2_Missense_Mutation_p.D221N	NM_001218	NP_001209	O43570	CAH12_HUMAN	carbonic anhydrase XII isoform 1 precursor	281	Extracellular (Potential).				one-carbon metabolic process	integral to membrane	carbonate dehydratase activity|zinc ion binding			ovary(1)	1					Acetazolamide(DB00819)	AGCCTCTCATCGAACTTCTGG	0.577													16	39					0	0	0.006122	0	0
CILP	8483	broad.mit.edu	37	15	65499223	65499223	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:65499223C>T	uc002aon.2	-	4	502	c.321G>A	c.(319-321)CAG>CAA	p.Q107Q		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	107					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						CATGGACCACCTGGCCAGTGC	0.622													18	12					0	0	0.006122	0	0
PARP6	56965	broad.mit.edu	37	15	72551976	72551976	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:72551976G>A	uc002auc.2	-	10	1242	c.783C>T	c.(781-783)CCC>CCT	p.P261P	PARP6_uc002aua.2_Silent_p.P106P|PARP6_uc002aub.2_RNA|PARP6_uc002aud.3_RNA|PARP6_uc002auf.1_Silent_p.P261P	NM_020214	NP_064599	Q2NL67	PARP6_HUMAN	poly (ADP-ribose) polymerase family, member 6	261							NAD+ ADP-ribosyltransferase activity				0						ACTCCAGAGTGGGAATGTTCT	0.502													104	88					0	0	0.014410	0	0
HCN4	10021	broad.mit.edu	37	15	73621928	73621928	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:73621928G>A	uc002avp.2	-	4	2570	c.1576C>T	c.(1576-1578)CAG>TAG	p.Q526*		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	526	Cytoplasmic (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		TCCTGGTACTGGCGCCGGGAG	0.642													29	12					0	0	0.010818	0	0
C15orf27	123591	broad.mit.edu	37	15	76496210	76496210	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:76496210G>A	uc002bbq.2	+	11	1305	c.1150G>A	c.(1150-1152)GCC>ACC	p.A384T	C15orf27_uc010bkp.2_Missense_Mutation_p.A200T|C15orf27_uc002bbr.2_Missense_Mutation_p.A200T|C15orf27_uc002bbs.2_Missense_Mutation_p.A62T	NM_152335	NP_689548	Q2M3C6	CO027_HUMAN	hypothetical protein LOC123591	384						integral to membrane					0						TGGCACCAGCGCCACCTCGGA	0.632													21	48					0	0	0.008871	0	0
CHRNB4	1143	broad.mit.edu	37	15	78921795	78921795	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:78921795G>A	uc002bed.1	-	5	964	c.852C>T	c.(850-852)ATC>ATT	p.I284I	CHRNB4_uc002bee.1_Intron|CHRNB4_uc010blh.1_Silent_p.I102I	NM_000750	NP_000741	P30926	ACHB4_HUMAN	cholinergic receptor, nicotinic, beta 4	284	Helical; (Potential).				regulation of neurotransmitter secretion|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0						TGGGTGGCACGATCTTGGAGA	0.562													33	36					0	0	0.013726	0	0
BCL2A1	597	broad.mit.edu	37	15	80253445	80253445	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:80253445G>A	uc002bfc.3	-	2	674	c.492C>T	c.(490-492)ATC>ATT	p.I164I	BCL2A1_uc002bfd.3_3'UTR	NM_004049	NP_004040	Q16548	B2LA1_HUMAN	BCL2-related protein A1 isoform 1	164					anti-apoptosis|apoptosis	cytoplasm	protein binding			pancreas(1)	1						GCATTTCACAGATCTTTCCTG	0.353													14	15					0	0	0.002450	0	0
C15orf40	123207	broad.mit.edu	37	15	83680267	83680267	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:83680267C>T	uc010uoo.1	-	1	127	c.93G>A	c.(91-93)AAG>AAA	p.K31K	C15orf40_uc010uon.1_Silent_p.K31K|C15orf40_uc002bjm.2_Silent_p.K31K|C15orf40_uc010uop.1_Silent_p.K31K|C15orf40_uc010uoq.1_RNA|C15orf40_uc010uor.1_Silent_p.K31K	NM_001160115	NP_001153587	Q8WUR7	CO040_HUMAN	hypothetical protein LOC123207 isoform d	4										skin(1)	1						TCGCACCAGCCTTCTTAGGCA	0.682											OREG0023391	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	29					0	0	0.013537	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84558914	84558914	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:84558914C>T	uc002bjz.3	+	11	1350	c.1126C>T	c.(1126-1128)CCT>TCT	p.P376S	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.P376S|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.P376S	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	376						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			GAGGGTAGTTCCTGACCATTA	0.408													46	39					0	0	0.010771	0	0
CHD2	1106	broad.mit.edu	37	15	93567671	93567672	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:93567671_93567672CC>TT	uc002bsp.2	+	39	5798_5799	c.5223_5224CC>TT	c.(5221-5226)TTCCGA>TTTTGA	p.R1742*		NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	1742					regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			AGCAGGATTTCCGACGAATGTC	0.495													25	29					0	0	0.004672	0	0
LRRK1	79705	broad.mit.edu	37	15	101523787	101523787	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr15:101523787C>T	uc002bwr.2	+	4	635	c.316C>T	c.(316-318)CTA>TTA	p.L106L	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA|LRRK1_uc002bwq.1_Silent_p.L106L	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	106	ANK 1.				small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			GGTCCGCTACCTACTCAGCAA	0.577													73	41					0	0	0.014410	0	0
SOLH	6650	broad.mit.edu	37	16	597654	597654	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:597654G>A	uc002chi.2	+	4	1179	c.816G>A	c.(814-816)AGG>AGA	p.R272R	SOLH_uc002chh.1_Silent_p.R272R	NM_005632	NP_005623	O75808	CAN15_HUMAN	small optic lobes	272					proteolysis	intracellular	calcium-dependent cysteine-type endopeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)	2		Hepatocellular(780;0.00335)				CCGGCTGCAGGGGAGCCCCCC	0.721													7	8					0	0	0.003080	0	0
DCI	1632	broad.mit.edu	37	16	2290030	2290030	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:2290030G>A	uc002cpr.2	-	7	895	c.859C>T	c.(859-861)CAG>TAG	p.Q287*	DCI_uc002cps.2_Nonsense_Mutation_p.Q270*	NM_001919	NP_001910	P42126	ECI1_HUMAN	dodecenoyl-Coenzyme A delta isomerase precursor	287					fatty acid beta-oxidation	mitochondrial matrix	dodecenoyl-CoA delta-isomerase activity				0						AGGGACTTCTGGATGGAGTCT	0.582													21	47					0	0	0.002780	0	0
GRIN2A	2903	broad.mit.edu	37	16	9934623	9934623	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:9934623G>A	uc002czo.3	-	7	2080	c.1532C>T	c.(1531-1533)TCG>TTG	p.S511L	GRIN2A_uc010uym.1_Missense_Mutation_p.S511L|GRIN2A_uc010uyn.1_Missense_Mutation_p.S354L|GRIN2A_uc002czr.3_Missense_Mutation_p.S511L	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	511	Extracellular (Potential).|Glutamate binding (By similarity).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GATGGTGAGCGAGCCAACTGC	0.448													14	63					0	0	0.003163	0	0
ACSM5	54988	broad.mit.edu	37	16	20422911	20422911	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:20422911C>T	uc002dhe.2	+	2	252	c.105C>T	c.(103-105)ATC>ATT	p.I35I	ACSM5_uc002dhd.1_Silent_p.I35I	NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	35					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						CTCAGAAGATCGTGGCCACCT	0.582													20	29					0	0	0.010504	0	0
DNAH3	55567	broad.mit.edu	37	16	20959876	20959876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:20959876C>T	uc010vbe.1	-	57	11272	c.11272G>A	c.(11272-11274)GAA>AAA	p.E3758K	DNAH3_uc010vbd.1_Missense_Mutation_p.E1193K	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3758					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TCCTCAATTTCCTTACAGTAG	0.532													17	54					0	0	0.006122	0	0
EEF2K	29904	broad.mit.edu	37	16	22262007	22262007	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:22262007C>T	uc002dki.2	+	5	926	c.441C>T	c.(439-441)TTC>TTT	p.F147F	EEF2K_uc002dkh.2_RNA	NM_013302	NP_037434	O00418	EF2K_HUMAN	elongation factor-2 kinase	147	Alpha-type protein kinase.				insulin receptor signaling pathway|translational elongation	cytosol	ATP binding|calcium ion binding|calmodulin binding|elongation factor-2 kinase activity|translation factor activity, nucleic acid binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(48;0.0223)		GGGAGTGCTTCCGGACGTAAG	0.587													26	36					0	0	0.005443	0	0
HS3ST4	9951	broad.mit.edu	37	16	26147295	26147295	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:26147295G>A	uc002dof.2	+	2	1489	c.1097G>A	c.(1096-1098)GGG>GAG	p.G366E		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	366	Lumenal (Potential).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		GACCCCGCCGGGGAAATGGCC	0.493													48	49					0	0	0.014410	0	0
GTF3C1	2975	broad.mit.edu	37	16	27481622	27481622	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:27481622G>A	uc002dov.1	-	31	4661	c.4621C>T	c.(4621-4623)CGT>TGT	p.R1541C	GTF3C1_uc002dou.2_Missense_Mutation_p.R1541C	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	1541						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						AAAGAGAAACGATCAGGCTGG	0.522													74	116					0	0	0.014410	0	0
CCDC101	112869	broad.mit.edu	37	16	28592443	28592443	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:28592443A>T	uc002dqf.2	+	2	238	c.53A>T	c.(52-54)CAT>CTT	p.H18L	uc010vct.1_Intron	NM_138414	NP_612423	Q96ES7	SGF29_HUMAN	coiled-coil domain containing 101	18	Potential.				establishment of protein localization to chromatin|histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ada2/Gcn5/Ada3 transcription activator complex|SAGA-type complex	methylated histone residue binding			central_nervous_system(1)	1						ACAGAGCTCCATCAGCTGATC	0.547													15	18					0	0	0.006122	0	0
CCDC101	112869	broad.mit.edu	37	16	28592445	28592445	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:28592445C>T	uc002dqf.2	+	2	240	c.55C>T	c.(55-57)CAG>TAG	p.Q19*	uc010vct.1_Intron	NM_138414	NP_612423	Q96ES7	SGF29_HUMAN	coiled-coil domain containing 101	19	Potential.				establishment of protein localization to chromatin|histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ada2/Gcn5/Ada3 transcription activator complex|SAGA-type complex	methylated histone residue binding			central_nervous_system(1)	1						AGAGCTCCATCAGCTGATCAA	0.547													14	18					0	0	0.004007	0	0
SEZ6L2	26470	broad.mit.edu	37	16	29906672	29906672	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:29906672C>G	uc002duq.3	-	5	1001	c.761G>C	c.(760-762)GGA>GCA	p.G254A	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_Missense_Mutation_p.G184A|SEZ6L2_uc002dur.3_Missense_Mutation_p.G184A|SEZ6L2_uc002dus.3_Intron|SEZ6L2_uc010vec.1_Missense_Mutation_p.G254A|SEZ6L2_uc010ved.1_Missense_Mutation_p.G210A	NM_201575	NP_963869	Q6UXD5	SE6L2_HUMAN	seizure related 6 homolog (mouse)-like 2 isoform	254	CUB 1.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane|plasma membrane				ovary(1)|skin(1)	2						AAGGACTTGTCCTTCTCCAAG	0.632													33	119					0	0	0.013726	0	0
ZNF48	197407	broad.mit.edu	37	16	30410313	30410313	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:30410313G>A	uc002dya.1	+	2	1801	c.1742G>A	c.(1741-1743)GGT>GAT	p.G581D	ZNF48_uc002dxz.1_Missense_Mutation_p.G458D	NM_152652	NP_689865	Q96MX3	ZNF48_HUMAN	zinc finger protein 48	581	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAGGGTTTTGGTGACAGTTCT	0.597													50	71					0	0	0.014410	0	0
ZNF768	79724	broad.mit.edu	37	16	30535882	30535882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:30535882C>T	uc002dyk.3	-	2	1755	c.1579G>A	c.(1579-1581)GAC>AAC	p.D527N	ZNF768_uc010vex.1_Missense_Mutation_p.D496N|uc002dyl.1_5'Flank|ZNF768_uc010vew.1_Missense_Mutation_p.D496N	NM_024671	NP_078947	Q9H5H4	ZN768_HUMAN	zinc finger protein 768	527	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	DNA binding|zinc ion binding				0						CGGATGAGGTCGGAGCTCTGG	0.682													18	37					0	0	0.008871	0	0
HERC2P4	440362	broad.mit.edu	37	16	32163504	32163504	+	RNA	SNP	C	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:32163504C>A	uc002ecx.2	-	2		c.267G>T				NR_002827				Homo sapiens hect domain and RLD 2 pseudogene 4, mRNA (cDNA clone IMAGE:5416019).												0						TGATTTTGCCCTTCGGGGTGA	0.532													17	81					2.08468e-23	2.33874e-23	0.012319	1	0
Unknown	0	broad.mit.edu	37	16	32192642	32192642	+	RNA	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:32192642G>A	uc010vfv.1	-	5		c.704C>T								Homo sapiens cDNA FLJ60890 complete cds, moderately similar to HECT domain and RCC1-like domain-containing protein 2.																		GTCCTGCAGGGGCATGCTTCT	0.572													7	26					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	16	34739689	34739689	+	RNA	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:34739689G>A	uc002edy.2	-	2		c.234C>T								Homo sapiens cDNA clone IMAGE:5269981.																		ATGTCCCACGGAGATTCTGCT	0.388													13	7					0	0	0.013537	0	0
MYLK3	91807	broad.mit.edu	37	16	46744653	46744653	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:46744653C>T	uc002eei.3	-	11	2279	c.2163G>A	c.(2161-2163)ATG>ATA	p.M721I	MYLK3_uc010vge.1_Missense_Mutation_p.M380I	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	myosin light chain kinase 3	721	Protein kinase.				cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			stomach(2)|skin(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	7		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				CAATGAAATTCATGGTCTCTG	0.478													91	120					0	0	0.014410	0	0
SALL1	6299	broad.mit.edu	37	16	51171209	51171209	+	Silent	SNP	A	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:51171209A>G	uc010vgs.1	-	3	3820	c.3789T>C	c.(3787-3789)ATT>ATC	p.I1263I	SALL1_uc010vgr.1_Silent_p.I1166I|SALL1_uc010cbv.2_Silent_p.I115I	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1263					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GGCTTCCAGGAATTGGAGGGA	0.597													35	36					0	0	0.003755	0	0
HAS3	3038	broad.mit.edu	37	16	69148696	69148696	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:69148696G>A	uc010cfh.2	+	4	1413	c.1189G>A	c.(1189-1191)GTT>ATT	p.V397I	HAS3_uc002ewk.2_Intron|HAS3_uc002ewl.2_Missense_Mutation_p.V397I	NM_005329	NP_005320	O00219	HAS3_HUMAN	hyaluronan synthase 3 isoform a	397	Helical; Name=3; (Potential).				carbohydrate metabolic process	integral to plasma membrane	hyaluronan synthase activity				0		Ovarian(137;0.101)		OV - Ovarian serous cystadenocarcinoma(108;0.0694)		CATTGCCACGGTTATACAGCT	0.547													24	112					0	0	0.006320	0	0
HYDIN	54768	broad.mit.edu	37	16	71015453	71015453	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:71015453G>A	uc002ezr.2	-	29	4476	c.4348C>T	c.(4348-4350)CAA>TAA	p.Q1450*		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1451										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				ACCTGCTCTTGATGTGAACTG	0.393													50	43					0	0	0.014410	0	0
HYDIN	54768	broad.mit.edu	37	16	71025993	71025993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:71025993C>T	uc002ezr.2	-	24	3893	c.3765G>A	c.(3763-3765)ATG>ATA	p.M1255I		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1255										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CATTTAAATCCATCTCGGGGG	0.453													4	31					0	0	0.001168	0	0
ZFHX3	463	broad.mit.edu	37	16	72830437	72830437	+	Silent	SNP	T	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:72830437T>G	uc002fck.2	-	9	6817	c.6144A>C	c.(6142-6144)CCA>CCC	p.P2048P	ZFHX3_uc002fcl.2_Silent_p.P1134P	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	2048	Poly-Pro.				muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				GAAGTGGGGGTGGAGGGGGTG	0.642													4	42					0	0	0.010729	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76389293	76389293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:76389293C>T	uc002feu.1	+	5	660	c.275C>T	c.(274-276)ACC>ATC	p.T92I	CNTNAP4_uc002fev.1_Missense_Mutation_p.T4I|CNTNAP4_uc010chb.1_Missense_Mutation_p.T67I|CNTNAP4_uc002fex.1_Missense_Mutation_p.T95I|CNTNAP4_uc002few.2_Missense_Mutation_p.T67I	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	92	Extracellular (Potential).|F5/8 type C.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						ATGGAGGTCACCGCTGTGGCC	0.483													13	46					0	0	0.001855	0	0
CMIP	80790	broad.mit.edu	37	16	81730266	81730266	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:81730266C>T	uc002fgp.2	+	14	1704	c.1632C>T	c.(1630-1632)GCC>GCT	p.A544A	CMIP_uc002fgq.1_Silent_p.A450A|CMIP_uc010vnq.1_Silent_p.A357A|CMIP_uc002fgr.1_Silent_p.A391A|CMIP_uc010vnr.1_Silent_p.A110A	NM_198390	NP_938204	Q8IY22	CMIP_HUMAN	c-Maf-inducing protein isoform C-mip	510						cytoplasm|nucleus					0						AGCTGTTCGCCAGCATGGTAC	0.657													25	15					0	0	0.006320	0	0
USP10	9100	broad.mit.edu	37	16	84806182	84806182	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:84806182C>T	uc002fii.2	+	12	2176	c.2034C>T	c.(2032-2034)CTC>CTT	p.L678L	USP10_uc010voe.1_Silent_p.L682L|USP10_uc010vof.1_Silent_p.L240L|USP10_uc002fij.2_Silent_p.L204L	NM_005153	NP_005144	Q14694	UBP10_HUMAN	ubiquitin specific protease 10	678					DNA damage response, signal transduction by p53 class mediator|DNA repair|protein deubiquitination|ubiquitin-dependent protein catabolic process	early endosome|intermediate filament cytoskeleton|nucleus	cystic fibrosis transmembrane conductance regulator binding|p53 binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						TGGAAAAACTCCCTCCTGTCC	0.463													91	84					0	0	0.014410	0	0
ZC3H18	124245	broad.mit.edu	37	16	88689692	88689692	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:88689692C>T	uc002fky.2	+	10	1933	c.1733C>T	c.(1732-1734)TCC>TTC	p.S578F	ZC3H18_uc010voz.1_Missense_Mutation_p.S602F|ZC3H18_uc010chw.2_RNA	NM_144604	NP_653205	Q86VM9	ZCH18_HUMAN	zinc finger CCCH-type containing 18	578	Ser-rich.					nucleus	nucleic acid binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0542)		CGGTCTTCATCCTACAGCTCC	0.652													35	12					0	0	0.013726	0	0
DPEP1	1800	broad.mit.edu	37	16	89703949	89703949	+	Missense_Mutation	SNP	C	T	T	rs139832614		TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:89703949C>T	uc010cin.2	+	8	1045	c.842C>T	c.(841-843)TCC>TTC	p.S281F	DPEP1_uc002fnr.3_Missense_Mutation_p.S281F|DPEP1_uc002fns.3_Missense_Mutation_p.S281F	NM_001128141	NP_001121613	P16444	DPEP1_HUMAN	dipeptidase 1 precursor	281					proteolysis	anchored to membrane|apical plasma membrane|microvillus membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity|protein binding			large_intestine(1)	1		all_lung(18;0.0054)|all_hematologic(23;0.094)		BRCA - Breast invasive adenocarcinoma(80;0.0258)	Cilastatin(DB01597)	GCCAACCTGTCCCAAGTGGCC	0.577													28	71					0	0	0.005443	0	0
RTN4RL1	146760	broad.mit.edu	37	17	1840680	1840680	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:1840680C>T	uc002ftp.2	-	2	455	c.436G>A	c.(436-438)GGC>AGC	p.G146S		NM_178568	NP_848663	Q86UN2	R4RL1_HUMAN	reticulon 4 receptor-like 1 precursor	146	LRR 4.				axon regeneration	anchored to plasma membrane	receptor activity				0						TGCAGGCCGCCAAAGACGCCG	0.627													26	31					0	0	0.004656	0	0
PAFAH1B1	5048	broad.mit.edu	37	17	2585041	2585041	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:2585041C>T	uc002fuw.3	+	11	1746	c.1178C>T	c.(1177-1179)CCC>CTC	p.P393L	PAFAH1B1_uc010ckb.1_Intron|PAFAH1B1_uc010vqz.1_Missense_Mutation_p.P188L	NM_000430	NP_000421	P43034	LIS1_HUMAN	platelet-activating factor acetylhydrolase,	393	WD 7.|Interaction with NDEL1 (By similarity).|Interaction with DCX.|Interaction with dynein and dynactin.				acrosome assembly|actin cytoskeleton organization|adult locomotory behavior|brain morphogenesis|corpus callosum morphogenesis|establishment of mitotic spindle orientation|G2/M transition of mitotic cell cycle|hippocampus development|layer formation in cerebral cortex|learning or memory|lipid catabolic process|microtubule organizing center organization|mitotic prometaphase|neuroblast proliferation|neuromuscular process controlling balance|neuron migration|platelet activating factor metabolic process|regulation of Rho GTPase activity|retrograde axon cargo transport|synaptic transmission|vesicle transport along microtubule	astral microtubule|cell cortex|centrosome|cytosol|kinetochore|motile primary cilium|nuclear membrane|perinuclear region of cytoplasm	dynactin binding|heparin binding|microtubule binding|phospholipase binding|phosphoprotein binding|protein homodimerization activity			skin(1)	1						AAGACGGCACCCTATGTCGTC	0.368													4	22					0	0	0.009096	0	0
ENO3	2027	broad.mit.edu	37	17	4859299	4859299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:4859299G>A	uc002gab.3	+	9	1022	c.928G>A	c.(928-930)GGG>AGG	p.G310R	ENO3_uc002gac.3_Missense_Mutation_p.G310R|ENO3_uc010vss.1_Missense_Mutation_p.G267R|ENO3_uc010vst.1_Missense_Mutation_p.G146R	NM_053013	NP_443739	P13929	ENOB_HUMAN	enolase 3	310					gluconeogenesis|glycolysis	phosphopyruvate hydratase complex	magnesium ion binding|phosphopyruvate hydratase activity			ovary(1)	1						CTTCCTCTCGGGGGTGAACAT	0.502													61	40					0	0	0.014410	0	0
CAMTA2	23125	broad.mit.edu	37	17	4885044	4885044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:4885044G>A	uc002gah.1	-	7	602	c.494C>T	c.(493-495)TCC>TTC	p.S165F	CAMTA2_uc010cku.1_Missense_Mutation_p.S188F|CAMTA2_uc002gag.1_Missense_Mutation_p.S164F|CAMTA2_uc002gai.1_Missense_Mutation_p.S167F|CAMTA2_uc010ckv.1_5'Flank|CAMTA2_uc010vsu.1_5'UTR	NM_015099	NP_055914	O94983	CMTA2_HUMAN	calmodulin binding transcription activator 2	165					cardiac muscle hypertrophy in response to stress|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	calmodulin binding|chromatin binding|histone deacetylase binding|transcription factor binding			ovary(1)	1						GCTGCTGATGGAACAAAAGAT	0.582													12	43					0	0	0.001855	0	0
FAM64A	54478	broad.mit.edu	37	17	6350821	6350821	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:6350821G>A	uc002gcw.1	+	3	382	c.333G>A	c.(331-333)CTG>CTA	p.L111L	FAM64A_uc002gct.1_Silent_p.L111L|FAM64A_uc002gcu.1_Silent_p.L111L|FAM64A_uc002gcv.1_Silent_p.L142L|FAM64A_uc002gcx.1_Silent_p.L111L|FAM64A_uc002gcy.1_RNA|FAM64A_uc002gcz.1_RNA|FAM64A_uc002gda.1_Silent_p.L111L|FAM64A_uc002gdb.1_Silent_p.L111L	NM_019013	NP_061886	Q9BSJ6	FA64A_HUMAN	family with sequence similarity 64, member A	111						nucleolus	protein binding				0				COAD - Colon adenocarcinoma(228;0.141)		CCAAGTGGCTGGTGGAGACCC	0.517													25	87					0	0	0.003954	0	0
PITPNM3	83394	broad.mit.edu	37	17	6441394	6441394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:6441394G>A	uc002gdd.3	-	2	182	c.31C>T	c.(31-33)CCC>TCC	p.P11S	PITPNM3_uc010cln.2_Missense_Mutation_p.P11S	NM_031220	NP_112497	Q9BZ71	PITM3_HUMAN	PITPNM family member 3 isoform 1	11					phosphatidylinositol metabolic process	endomembrane system|integral to membrane	calcium ion binding|lipid binding|phosphatidylinositol transporter activity|receptor tyrosine kinase binding			ovary(2)|central_nervous_system(2)	4				Colorectal(2;0.000372)|READ - Rectum adenocarcinoma(2;0.0276)|LUAD - Lung adenocarcinoma(2;0.0836)|COAD - Colon adenocarcinoma(228;0.185)		CCGCCCGGGGGAGGACCACCT	0.557													15	14					0	0	0.006122	0	0
CLEC10A	10462	broad.mit.edu	37	17	6982116	6982116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:6982116C>T	uc002gek.2	-	2	319	c.16G>A	c.(16-18)GAA>AAA	p.E6K	CLEC10A_uc002gej.2_Missense_Mutation_p.E6K|CLEC10A_uc002gel.2_Missense_Mutation_p.E6K|CLEC10A_uc010clv.1_Missense_Mutation_p.E6K	NM_182906	NP_878910	Q8IUN9	CLC10_HUMAN	C-type lectin, superfamily member 14 isoform 1	6	Endocytosis signal (Potential).|Cytoplasmic (Potential).				endocytosis|innate immune response	integral to membrane|plasma membrane	sugar binding				0						TGGAAGTTTTCATACGTCCTT	0.428													52	129					0	0	0.014410	0	0
DNAH9	1770	broad.mit.edu	37	17	11687643	11687643	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:11687643C>T	uc002gne.2	+	41	7916	c.7848C>T	c.(7846-7848)TCC>TCT	p.S2616S	DNAH9_uc010coo.2_Silent_p.S1910S	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2616	AAA 3 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TTGTCCTCTCCTTCCCGGGGG	0.532													91	110					0	0	0.014410	0	0
RICH2	9912	broad.mit.edu	37	17	12847412	12847412	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:12847412G>C	uc002gnr.3	+	10	1087	c.760G>C	c.(760-762)GGG>CGG	p.G254R	RICH2_uc010vvk.1_Missense_Mutation_p.G254R|RICH2_uc010vvl.1_Missense_Mutation_p.G254R|RICH2_uc002gns.3_Missense_Mutation_p.G54R|RICH2_uc010vvm.1_Missense_Mutation_p.G254R|RICH2_uc010vvn.1_RNA|RICH2_uc002gnt.1_5'UTR	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	254					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						GCCTTCCTTCGGGAAGCCGCT	0.587													10	14					0	0	0.008291	0	0
TEKT3	64518	broad.mit.edu	37	17	15234783	15234783	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:15234783G>A	uc002gon.2	-	3	307	c.120C>T	c.(118-120)TCC>TCT	p.S40S		NM_031898	NP_114104	Q9BXF9	TEKT3_HUMAN	tektin 3	40					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0877)		GGGTCAAATTGGAGTGGGGAA	0.537													18	37					0	0	0.004990	0	0
TRPV2	51393	broad.mit.edu	37	17	16330068	16330068	+	Silent	SNP	G	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:16330068G>T	uc002gpy.2	+	7	1495	c.1128G>T	c.(1126-1128)CTG>CTT	p.L376L	TRPV2_uc002gpz.2_Intron	NM_016113	NP_057197	Q9Y5S1	TRPV2_HUMAN	transient receptor potential cation channel,	376	Cytoplasmic (Potential).|Required for interaction with SLC50A1 (By similarity).				sensory perception	integral to plasma membrane|melanosome	calcium channel activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		TGGAGCCCCTGAACAAACTGC	0.517													25	27					3.28513e-13	3.66555e-13	0.003954	1	0
MYO15A	51168	broad.mit.edu	37	17	18060493	18060493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:18060493C>T	uc010vxh.1	+	49	9075	c.8737C>T	c.(8737-8739)CGC>TGC	p.R2913C	MYO15A_uc010vxi.1_Missense_Mutation_p.R177C|MYO15A_uc010vxj.1_Missense_Mutation_p.R112C|MYO15A_uc010vxk.1_Intron|MYO15A_uc010vxl.1_5'Flank|MYO15A_uc002gsl.2_5'Flank|MYO15A_uc010vxm.1_5'Flank	NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	2913	Tail.|SH3.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CTGCGTGGTTCGCAGGAAGGT	0.662													7	7					0	0	0.003080	0	0
FBXW10	10517	broad.mit.edu	37	17	18647600	18647600	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:18647600C>T	uc002guk.2	+	1	275	c.43C>T	c.(43-45)CGT>TGT	p.R15C	FBXW10_uc002guj.2_Missense_Mutation_p.R15C|FBXW10_uc002gul.2_Missense_Mutation_p.R15C|FBXW10_uc010cqh.1_Missense_Mutation_p.R15C	NM_031456	NP_113644	Q5XX13	FBW10_HUMAN	F-box and WD-40 domain protein 10	15										ovary(1)	1						CCCCTATTTTCGTTGTGAGAA	0.493													61	98					0	0	0.014410	0	0
SLC5A10	125206	broad.mit.edu	37	17	18923669	18923669	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:18923669C>T	uc002guu.1	+	15	1757	c.1716C>T	c.(1714-1716)TTC>TTT	p.F572F	SLC5A10_uc002gur.1_Silent_p.F542F|SLC5A10_uc002gut.1_Silent_p.F588F|SLC5A10_uc002guv.1_Silent_p.F545F|SLC5A10_uc010vyl.1_Silent_p.F536F	NM_001042450	NP_001035915	A0PJK1	SC5AA_HUMAN	solute carrier family 5 (sodium/glucose	572	Cytoplasmic (Potential).				sodium ion transport|transmembrane transport	integral to membrane	transporter activity			ovary(1)	1						AACACGCCTTCTGGGCCCGTG	0.542													56	42					0	0	0.014410	0	0
MAPK7	5598	broad.mit.edu	37	17	19284080	19284080	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:19284080C>T	uc002gvn.2	+	4	944	c.558C>T	c.(556-558)TCC>TCT	p.S186S	B9D1_uc010cqm.1_5'Flank|B9D1_uc002gvl.3_5'Flank|MAPK7_uc002gvo.2_Silent_p.S47S|MAPK7_uc002gvq.2_Silent_p.S186S|MAPK7_uc002gvp.2_Silent_p.S186S	NM_139033	NP_620602	Q13164	MK07_HUMAN	mitogen-activated protein kinase 7 isoform 1	186	Necessary for oligomerization (By similarity).|Protein kinase.				cell cycle|cell differentiation|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase activity|protein binding			central_nervous_system(4)|lung(3)|stomach(1)|skin(1)	9	all_cancers(12;2.87e-05)|all_epithelial(12;0.00114)|Hepatocellular(7;0.00345)|Breast(13;0.206)					TGAAGCCCTCCAACCTATTGG	0.552													10	11					0	0	0.006214	0	0
SUPT6H	6830	broad.mit.edu	37	17	27003316	27003316	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:27003316C>T	uc002hby.2	+	7	855	c.765C>T	c.(763-765)CCC>CCT	p.P255P	SUPT6H_uc010crt.2_Silent_p.P255P	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	255					chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					GAGTGCGCCCCAAGAAGACCA	0.458													18	70					0	0	0.007413	0	0
SLFN11	91607	broad.mit.edu	37	17	33690205	33690205	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:33690205G>A	uc010ctp.2	-	4	1064	c.622C>T	c.(622-624)CCT>TCT	p.P208S	SLFN11_uc010ctq.2_Missense_Mutation_p.P208S|SLFN11_uc002hjh.3_Missense_Mutation_p.P208S|SLFN11_uc002hjg.3_Missense_Mutation_p.P208S|SLFN11_uc010ctr.2_Missense_Mutation_p.P208S	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	208						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TGAGACTCAGGAAAAGGCAGG	0.413													28	61					0	0	0.006320	0	0
PEX12	5193	broad.mit.edu	37	17	33904921	33904921	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:33904921C>T	uc002hjp.2	-	1	736	c.120G>A	c.(118-120)GTG>GTA	p.V40V		NM_000286	NP_000277	O00623	PEX12_HUMAN	peroxisomal biogenesis factor 12	40	Cytoplasmic (Potential).				protein import into peroxisome matrix	integral to peroxisomal membrane	protein C-terminus binding|zinc ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TTACCTTGACCACATGCTGAA	0.438													40	34					0	0	0.014410	0	0
MYO19	80179	broad.mit.edu	37	17	34866603	34866603	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:34866603G>A	uc010wcy.1	-	14	2131	c.1139C>T	c.(1138-1140)GCC>GTC	p.A380V	MYO19_uc002hmw.2_Missense_Mutation_p.A380V|MYO19_uc010cuu.2_RNA|MYO19_uc010wcz.1_RNA	NM_001163735	NP_001157207	Q96H55	MYO19_HUMAN	myosin XIX isoform 2	380	Myosin head-like.					mitochondrial outer membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)	1		Breast(25;0.00957)|Ovarian(249;0.17)	Kidney(155;0.104)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		GATCAGTTTGGCCAGGCAGTC	0.607													10	4					0	0	0.006214	0	0
KRTAP4-4	84616	broad.mit.edu	37	17	39316469	39316469	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:39316469G>A	uc002hwc.2	-	1	515	c.475C>T	c.(475-477)CAT>TAT	p.H159Y		NM_032524	NP_115913	Q9BYR3	KRA44_HUMAN	keratin associated protein 4.4	159						keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			TGGCCACAATGGGGCCTGTAG	0.617													30	15					0	0	0.010818	0	0
KRT32	3882	broad.mit.edu	37	17	39620632	39620632	+	Missense_Mutation	SNP	G	A	A	rs147094229		TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:39620632G>A	uc002hwr.2	-	4	833	c.772C>T	c.(772-774)CCG>TCG	p.P258S		NM_002278	NP_002269	Q14532	K1H2_HUMAN	keratin 32	258	Linker 12.|Rod.				epidermis development	intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000812)				AGGTCCACCGGGGGTGCAGCG	0.577													15	16					0	0	0.003163	0	0
WNK4	65266	broad.mit.edu	37	17	40933287	40933287	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:40933287G>A	uc002ibj.2	+	1	592	c.571G>A	c.(571-573)GGG>AGG	p.G191R	WNK4_uc010wgx.1_5'UTR|WNK4_uc002ibk.1_5'Flank	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	191	Protein kinase.				intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		GGTGTATCGAGGGCTAGACAC	0.617													11	42					0	0	0.010729	0	0
TTLL6	284076	broad.mit.edu	37	17	46862366	46862366	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:46862366C>T	uc010wlo.1	-	14	1994	c.1959G>A	c.(1957-1959)TCG>TCA	p.S653S	TTLL6_uc002iob.2_Silent_p.S346S|TTLL6_uc010dbi.2_RNA|TTLL6_uc002ioc.2_Silent_p.S406S|TTLL6_uc002iod.2_Silent_p.S500S	NM_001130918	NP_001124390	Q8N841	TTLL6_HUMAN	tubulin tyrosine ligase-like family, member 6	605						cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity				0						GCTCCAACTTCGAGCTGCTGA	0.458													30	83					0	0	0.009535	0	0
GNGT2	2793	broad.mit.edu	37	17	47284745	47284745	+	Missense_Mutation	SNP	C	T	T	rs144009787		TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:47284745C>T	uc002ioo.1	-	3	347	c.40G>A	c.(40-42)GAG>AAG	p.E14K	ABI3_uc002ioq.1_5'Flank|ABI3_uc002iop.1_5'Flank	NM_031498	NP_113686	O14610	GBGT2_HUMAN	guanine nucleotide binding protein-gamma	14					G-protein coupled receptor protein signaling pathway|phototransduction|synaptic transmission	extracellular region|heterotrimeric G-protein complex	GTPase activity|signal transducer activity				0			Epithelial(5;6.37e-06)|all cancers(6;6.36e-05)			TGCTCCACCTCCATCTTCAAC	0.542													32	142					0	0	0.008361	0	0
OR4D2	124538	broad.mit.edu	37	17	56247483	56247483	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:56247483C>T	uc010wnp.1	+	1	467	c.467C>T	c.(466-468)TCT>TTT	p.S156F		NM_001004707	NP_001004707	P58180	OR4D2_HUMAN	olfactory receptor, family 4, subfamily D,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						TTTGTCCACTCTATTGTCCAG	0.567													45	125					0	0	0.010771	0	0
BZRAP1	9256	broad.mit.edu	37	17	56387343	56387343	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:56387343C>T	uc002ivx.3	-	21	4747	c.3876G>A	c.(3874-3876)AGG>AGA	p.R1292R	BZRAP1_uc010dcs.2_Silent_p.R1232R|BZRAP1_uc010wnt.1_Silent_p.R1292R	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1292						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CCCCATTCTCCCTGATGCTGT	0.493													30	45					0	0	0.003755	0	0
BZRAP1	9256	broad.mit.edu	37	17	56393446	56393447	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:56393446_56393447GG>AA	uc002ivx.3	-	16	2906_2907	c.2035_2036CC>TT	c.(2035-2037)CCG>TTG	p.P679L	BZRAP1_uc010dcs.2_Missense_Mutation_p.P619L|BZRAP1_uc010wnt.1_Missense_Mutation_p.P679L	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	679	SH3 1.					mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					AGCTGTCAGCGGAAGCTCTGCT	0.52													55	85					0	0	0.004672	0	0
TBX4	9496	broad.mit.edu	37	17	59560639	59560639	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:59560639G>A	uc002izi.2	+	8	1445	c.1400G>A	c.(1399-1401)GGA>GAA	p.G467E	TBX4_uc010ddo.2_Missense_Mutation_p.G468E|TBX4_uc010woy.1_Missense_Mutation_p.G468E	NM_018488	NP_060958	P57082	TBX4_HUMAN	T-box 4	467					leg morphogenesis|skeletal system morphogenesis	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						CAGCCACCAGGAAATGCCCAC	0.647													38	54					0	0	0.006230	0	0
TLK2	11011	broad.mit.edu	37	17	60689781	60689781	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:60689781G>A	uc010ddp.2	+	23	2442	c.2174G>A	c.(2173-2175)CGA>CAA	p.R725Q	TLK2_uc002izx.3_Missense_Mutation_p.R551Q|TLK2_uc002izz.3_Missense_Mutation_p.R703Q|TLK2_uc002jaa.3_Missense_Mutation_p.R671Q|TLK2_uc010wpd.1_Missense_Mutation_p.R671Q	NM_006852	NP_006843	Q86UE8	TLK2_HUMAN	tousled-like kinase 2 isoform A	725	Protein kinase.				cell cycle|chromatin modification|intracellular signal transduction|regulation of chromatin assembly or disassembly|response to DNA damage stimulus	nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(1)|kidney(1)	2						TTGGCCTACCGAAAGGAGGAC	0.537													44	51					0	0	0.014410	0	0
CACNG4	27092	broad.mit.edu	37	17	65020989	65020989	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:65020989C>T	uc002jft.1	+	3	333	c.318C>T	c.(316-318)GCC>GCT	p.A106A		NM_014405	NP_055220	Q9UBN1	CCG4_HUMAN	voltage-dependent calcium channel gamma-4	106	Extracellular (Potential).				membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane	voltage-gated calcium channel activity			central_nervous_system(1)	1	all_cancers(12;9.86e-11)		BRCA - Breast invasive adenocarcinoma(6;1.35e-07)			TCGTGCGAGCCTCCAGCGTCT	0.637													65	78					0	0	0.014410	0	0
WIPI1	55062	broad.mit.edu	37	17	66447029	66447029	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:66447029G>A	uc010dey.2	-	3	264	c.173C>T	c.(172-174)CCG>CTG	p.P58L	WIPI1_uc002jhd.3_RNA|WIPI1_uc010wqo.1_5'UTR|WIPI1_uc002jhe.3_RNA	NM_017983	NP_060453	Q5MNZ9	WIPI1_HUMAN	WD repeat domain, phosphoinositide interacting	58					macroautophagy|vesicle targeting, trans-Golgi to endosome	autophagic vacuole membrane|clathrin-coated vesicle|cytosol|endosome membrane|PAS complex|pre-autophagosomal structure membrane|trans-Golgi network	androgen receptor binding|estrogen receptor binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding				0						GTAGACGTCCGGGATTTCATC	0.557													21	46					0	0	0.010504	0	0
ABCA8	10351	broad.mit.edu	37	17	66890438	66890438	+	Missense_Mutation	SNP	G	A	A	rs143022668	byFrequency	TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:66890438G>A	uc002jhp.2	-	21	2971	c.2792C>T	c.(2791-2793)TCG>TTG	p.S931L	ABCA8_uc002jhq.2_Missense_Mutation_p.S971L|ABCA8_uc010wqq.1_Missense_Mutation_p.S971L|ABCA8_uc010wqr.1_Missense_Mutation_p.S910L|ABCA8_uc002jhr.2_Missense_Mutation_p.S971L	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	931						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					GCATGCTAACGAAAAGCTGTA	0.313													9	22					0	0	0.008291	0	0
ABCA6	23460	broad.mit.edu	37	17	67094154	67094154	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:67094154G>A	uc002jhw.1	-	23	3202	c.3027C>T	c.(3025-3027)CTC>CTT	p.L1009L		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	1009	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					ACCCAGTCCAGAGTCCTATGT	0.348													15	33					0	0	0.004007	0	0
UNC13D	201294	broad.mit.edu	37	17	73827385	73827385	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:73827385T>A	uc002jpp.2	-	26	2872	c.2492A>T	c.(2491-2493)GAG>GTG	p.E831V	UNC13D_uc010wsk.1_Missense_Mutation_p.E831V|UNC13D_uc002jpq.1_3'UTR	NM_199242	NP_954712	Q70J99	UN13D_HUMAN	unc-13 homolog D	831	MHD2.				positive regulation of exocytosis|regulation of mast cell degranulation	exocytic vesicle|late endosome|lysosome|membrane|recycling endosome	protein binding			upper_aerodigestive_tract(1)|skin(1)	2			all cancers(21;2.11e-06)|Epithelial(20;2.32e-06)|BRCA - Breast invasive adenocarcinoma(9;0.000618)|LUSC - Lung squamous cell carcinoma(166;0.154)			GGCGGCCGCCTCCACCAGCAC	0.662									Familial_Hemophagocytic_Lymphohistiocytosis				10	45					0	0	0.008291	0	0
TNRC6C	57690	broad.mit.edu	37	17	76045235	76045235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:76045235C>T	uc002jud.2	+	4	692	c.92C>T	c.(91-93)CCT>CTT	p.P31L	TNRC6C_uc002juf.2_Missense_Mutation_p.P31L|TNRC6C_uc002jue.2_Missense_Mutation_p.P31L	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	31	Sufficient for interaction with argonaute family proteins.				gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			GTCCAAAGCCCTTCTAATCAG	0.562													30	49					0	0	0.009535	0	0
NPLOC4	55666	broad.mit.edu	37	17	79539070	79539070	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:79539070G>A	uc002kat.3	-	13	1508	c.1326C>T	c.(1324-1326)CCC>CCT	p.P442P	NPLOC4_uc002kau.3_Silent_p.P442P|NPLOC4_uc010wur.1_Silent_p.P281P|NPLOC4_uc002kas.2_5'Flank	NM_017921	NP_060391	Q8TAT6	NPL4_HUMAN	nuclear protein localization 4	442					cellular membrane fusion|ER-associated protein catabolic process|Golgi organization	cytosol|endoplasmic reticulum|nuclear outer membrane-endoplasmic reticulum membrane network|nucleus	zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			CCACAGGCAGGGGCCGGGCCA	0.562													8	23					0	0	0.003080	0	0
FOXK2	3607	broad.mit.edu	37	17	80529660	80529660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr17:80529660C>T	uc002kfn.2	+	4	994	c.823C>T	c.(823-825)CCC>TCC	p.P275S	FOXK2_uc002kfm.1_Missense_Mutation_p.P275S|FOXK2_uc010diu.2_Missense_Mutation_p.P275S	NM_004514	NP_004505	Q01167	FOXK2_HUMAN	forkhead box K2	275	Fork-head.				embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0	Breast(20;0.00106)|all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.0371)|BRCA - Breast invasive adenocarcinoma(99;0.0415)			TACGATGGCTCCCGACAAACA	0.443													15	22					0	0	0.004007	0	0
ENOSF1	55556	broad.mit.edu	37	18	683327	683327	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr18:683327G>A	uc002kku.3	-	11	870	c.795C>T	c.(793-795)TCC>TCT	p.S265S	ENOSF1_uc002kkt.3_Silent_p.S183S|ENOSF1_uc010dke.2_RNA|ENOSF1_uc010dkf.2_Silent_p.S286S|ENOSF1_uc002kkv.3_Silent_p.S252S|ENOSF1_uc002kkw.3_Silent_p.S84S|ENOSF1_uc002kkx.3_Silent_p.S189S	NM_017512	NP_059982	Q7L5Y1	ENOF1_HUMAN	enolase superfamily 1 isoform rTS beta	265					cellular amino acid catabolic process	mitochondrion	isomerase activity|metal ion binding			ovary(1)	1						TGGCCAGCTTGGACATCCACT	0.567													56	125					0	0	0.014410	0	0
MC5R	4161	broad.mit.edu	37	18	13826521	13826521	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr18:13826521C>T	uc010xaf.1	+	1	757	c.757C>T	c.(757-759)CCG>TCG	p.P253S		NM_005913	NP_005904	P33032	MC5R_HUMAN	melanocortin 5 receptor	253	Helical; Name=6; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocortin receptor activity|protein binding			ovary(3)|lung(2)|breast(1)	6						GTGCTGGGCCCCGTTCTTCCT	0.577													31	121					0	0	0.007291	0	0
POTEC	388468	broad.mit.edu	37	18	14542924	14542924	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr18:14542924C>T	uc010dln.2	-	1	676	c.222G>A	c.(220-222)GGG>GGA	p.G74G	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	74										skin(3)	3						TCGTGCCGCTCCCCCTGCAGC	0.567													16	284					0	0	0.007413	0	0
ANKRD30B	374860	broad.mit.edu	37	18	14763875	14763875	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr18:14763875G>A	uc010dlo.2	+	7	1191	c.1011G>A	c.(1009-1011)AGG>AGA	p.R337R	ANKRD30B_uc010xak.1_RNA	NM_001145029	NP_001138501	Q9BXX2	AN30B_HUMAN	ankyrin repeat domain 30B	337										ovary(1)|skin(1)	2						AAACACCTAGGAAAATTTTGA	0.418													3	10					0	0	0.004672	0	0
LAMA3	3909	broad.mit.edu	37	18	21330936	21330936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr18:21330936C>T	uc002kuq.2	+	5	825	c.739C>T	c.(739-741)CAC>TAC	p.H247Y	LAMA3_uc010dlv.1_Missense_Mutation_p.H247Y|LAMA3_uc002kur.2_Missense_Mutation_p.H247Y	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	247	Laminin N-terminal.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TACTTTCTCTCACACCCTGAG	0.448													49	43					0	0	0.014410	0	0
ZNF521	25925	broad.mit.edu	37	18	22807313	22807313	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr18:22807313T>A	uc002kvk.2	-	4	816	c.569A>T	c.(568-570)AAG>ATG	p.K190M	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.K190M|ZNF521_uc002kvl.2_Translation_Start_Site	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	190	C2H2-type 4.				cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					TAAGTGGATCTTCAAGTGATC	0.488			T	PAX5	ALL								38	37					0	0	0.004878	0	0
DSG4	147409	broad.mit.edu	37	18	28970666	28970666	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr18:28970666C>T	uc002kwq.2	+	6	700	c.565C>T	c.(565-567)CAT>TAT	p.H189Y	DSG4_uc002kwr.2_Missense_Mutation_p.H189Y	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	189	Cadherin 2.|Extracellular (Potential).		Missing (in LAH1).		homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TGAAGAAAATCATCTGAATTC	0.408													17	71					0	0	0.006122	0	0
WBP11P1	441818	broad.mit.edu	37	18	30091984	30091984	+	RNA	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr18:30091984G>A	uc010dmc.2	+	1		c.359G>A				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						CCGAGACATGGAGAAATTGGA	0.403													19	22					0	0	0.006122	0	0
SYT4	6860	broad.mit.edu	37	18	40853626	40853626	+	Silent	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr18:40853626T>C	uc002law.2	-	2	1137	c.768A>G	c.(766-768)GAA>GAG	p.E256E	SYT4_uc010dng.2_Intron|SYT4_uc010xcm.1_Silent_p.E238E|SYT4_uc010dnh.2_Intron	NM_020783	NP_065834	Q9H2B2	SYT4_HUMAN	synaptotagmin IV	256	Phospholipid binding (Probable).|C2 1.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			skin(5)	5						GAATTAGAACTTCCCCAATGA	0.353													17	25					0	0	0.004990	0	0
SYT4	6860	broad.mit.edu	37	18	40853629	40853629	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr18:40853629C>T	uc002law.2	-	2	1134	c.765G>A	c.(763-765)GGG>GGA	p.G255G	SYT4_uc010dng.2_Intron|SYT4_uc010xcm.1_Silent_p.G237G|SYT4_uc010dnh.2_Intron	NM_020783	NP_065834	Q9H2B2	SYT4_HUMAN	synaptotagmin IV	255	Phospholipid binding (Probable).|C2 1.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			skin(5)	5						TTAGAACTTCCCCAATGATAT	0.353													18	25					0	0	0.004990	0	0
PSTPIP2	9050	broad.mit.edu	37	18	43591154	43591154	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr18:43591154C>T	uc002lbp.3	-	5	443	c.347G>A	c.(346-348)CGA>CAA	p.R116Q	PSTPIP2_uc002lbq.3_Missense_Mutation_p.R116Q	NM_024430	NP_077748	Q9H939	PPIP2_HUMAN	proline-serine-threonine phosphatase interacting	116	Potential.					membrane				ovary(1)	1						AACCTTTTTTCGTTGTAGTTT	0.428													78	103					0	0	0.014410	0	0
TCEB3C	162699	broad.mit.edu	37	18	44554605	44554605	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr18:44554605G>A	uc010xdb.1	-	1	1845	c.1609C>T	c.(1609-1611)CGA>TGA	p.R537*	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	537					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						TTGTAGTCTCGAATTGCCTTG	0.418													9	475					0	0	0.008871	0	0
MYO5B	4645	broad.mit.edu	37	18	47480796	47480796	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr18:47480796C>T	uc002leb.2	-	13	1843	c.1555G>A	c.(1555-1557)GGA>AGA	p.G519R	MYO5B_uc002lec.1_Missense_Mutation_p.G518R	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	519	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TGGTCAGTTCCTTTGGGGACC	0.577													30	38					0	0	0.009535	0	0
ONECUT2	9480	broad.mit.edu	37	18	55143924	55143924	+	Missense_Mutation	SNP	C	T	T	rs3745073		TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr18:55143924C>T	uc002lgo.2	+	2	1516	c.1484C>T	c.(1483-1485)TCG>TTG	p.S495L		NM_004852	NP_004843	O95948	ONEC2_HUMAN	one cut domain, family member 2	495					organ morphogenesis	nucleus	sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3		Colorectal(73;0.234)		READ - Rectum adenocarcinoma(59;0.227)|Colorectal(16;0.245)		GGGGGCTCCTCGTCCACCTCC	0.557													7	38					0	0	0.003080	0	0
SERPINB4	6318	broad.mit.edu	37	18	61326686	61326686	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr18:61326686C>T	uc002ljg.2	-	3	324	c.298G>A	c.(298-300)GAG>AAG	p.E100K	SERPINB3_uc002lji.2_Missense_Mutation_p.E100K|SERPINB3_uc010dqa.2_Missense_Mutation_p.E100K|SERPINB3_uc010dqb.2_Missense_Mutation_p.E100K			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;	100					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						ATCTTCAGCTCATATGCATCA	0.393													36	49					0	0	0.006999	0	0
CD226	10666	broad.mit.edu	37	18	67562948	67562948	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr18:67562948G>A	uc010dqo.2	-	3	1163	c.716C>T	c.(715-717)ACT>ATT	p.T239I	CD226_uc002lkm.3_Missense_Mutation_p.T239I	NM_006566	NP_006557	Q15762	CD226_HUMAN	CD226 molecule precursor	239	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion|cell recognition|positive regulation of Fc receptor mediated stimulatory signaling pathway|positive regulation of immunoglobulin mediated immune response|positive regulation of mast cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target	cell surface|integral to plasma membrane|membrane raft	cell adhesion molecule binding|integrin binding|protein kinase binding|receptor activity				0		Esophageal squamous(42;0.129)				CTCGGCTACAGTCAATCTCAT	0.507													60	97					0	0	0.014410	0	0
SHC2	25759	broad.mit.edu	37	19	430738	430738	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:430738G>A	uc002loq.3	-	9	1120	c.1120C>T	c.(1120-1122)CCT>TCT	p.P374S	SHC2_uc002lop.3_Missense_Mutation_p.P115S	NM_012435	NP_036567	P98077	SHC2_HUMAN	SHC (Src homology 2 domain containing)	374	CH1.				insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol					0		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTTAGAGAAGGAGATGGGCCC	0.637													17	14					0	0	0.010504	0	0
REXO1	57455	broad.mit.edu	37	19	1818750	1818750	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:1818750C>T	uc002lua.3	-	9	2952	c.2857G>A	c.(2857-2859)GGG>AGG	p.G953R	REXO1_uc010dsq.2_Missense_Mutation_p.G262R|REXO1_uc010xgs.1_5'UTR|MIR1909_hsa-mir-1909|MI0008330_5'Flank|REXO1_uc010dsp.1_RNA	NM_020695	NP_065746	Q8N1G1	REXO1_HUMAN	transcription elongation factor B polypeptide 3	953						nucleus	exonuclease activity|nucleic acid binding				0		Ovarian(11;1.78e-06)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ATTGCGCCCCCGGGCCGCTCT	0.667													7	24					0	0	0.001984	0	0
GNA15	2769	broad.mit.edu	37	19	3155863	3155863	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:3155863G>A	uc002lxf.2	+	5	915	c.657G>A	c.(655-657)TGG>TGA	p.W219*		NM_002068	NP_002059	P30679	GNA15_HUMAN	guanine nucleotide binding protein (G protein),	219					activation of phospholipase C activity by dopamine receptor signaling pathway|activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation	heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			skin(2)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;7.04e-05)|OV - Ovarian serous cystadenocarcinoma(105;5.08e-113)|Epithelial(107;6.19e-111)|all cancers(105;6.19e-103)|BRCA - Breast invasive adenocarcinoma(158;0.00145)|STAD - Stomach adenocarcinoma(1328;0.184)		GTAAGAAATGGATCCATTGTT	0.597													16	23					0	0	0.004990	0	0
TJP3	27134	broad.mit.edu	37	19	3743959	3743959	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:3743959G>A	uc010xhv.1	+	14	1965	c.1965G>A	c.(1963-1965)GTG>GTA	p.V655V	TJP3_uc010xhs.1_Silent_p.V622V|TJP3_uc010xht.1_Silent_p.V586V|TJP3_uc010xhu.1_Silent_p.V631V|TJP3_uc010xhw.1_Silent_p.V641V	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	636	Guanylate kinase-like.					tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCCGGTAGTGATCCTGGGAC	0.448													47	51					0	0	0.014410	0	0
UHRF1	29128	broad.mit.edu	37	19	4911012	4911012	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:4911012G>A	uc002mbo.2	+	2	283	c.115G>A	c.(115-117)GAG>AAG	p.E39K	uc002mbn.1_5'Flank|UHRF1_uc010xik.1_Intron|UHRF1_uc010duf.2_RNA|UHRF1_uc002mbp.2_Missense_Mutation_p.E52K	NM_001048201	NP_001041666	Q96T88	UHRF1_HUMAN	ubiquitin-like with PHD and ring finger domains	39	Ubiquitin-like.				cell cycle|cell proliferation|DNA repair|regulation of transcription from RNA polymerase II promoter	nucleus	acid-amino acid ligase activity|methyl-CpG binding|methylated histone residue binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0276)		GTTCCACGTGGAGCCAGGCCT	0.642											OREG0025176	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	71					0	0	0.003954	0	0
TUBB4	10382	broad.mit.edu	37	19	6501335	6501335	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:6501335G>A	uc002mfg.1	-	3	347	c.240C>T	c.(238-240)CCC>CCT	p.P80P	TUBB4_uc002mff.1_Silent_p.P8P	NM_006087	NP_006078	P04350	TBB4_HUMAN	tubulin, beta 4	80					'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(2)	2		Hepatocellular(1079;0.00213)|Renal(1328;0.0183)		Lung(535;3.23e-05)|STAD - Stomach adenocarcinoma(1328;8.24e-05)|GBM - Glioblastoma multiforme(1328;0.00839)|READ - Rectum adenocarcinoma(264;0.155)		TCTGACCGAAGGGGCCAGAAC	0.577													8	17					0	0	0.003080	0	0
C3	718	broad.mit.edu	37	19	6697719	6697719	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:6697719C>T	uc002mfm.2	-	20	2589	c.2527G>A	c.(2527-2529)GAG>AAG	p.E843K		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	843					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TCCACCTGCTCGTTTCGAACA	0.587													24	15					0	0	0.002780	0	0
FBN3	84467	broad.mit.edu	37	19	8174214	8174214	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:8174214G>A	uc002mjf.2	-	35	4536	c.4515C>T	c.(4513-4515)TCC>TCT	p.S1505S		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1505	TB 6.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CGGCACTGCAGGAAATGCCAC	0.602													31	27					0	0	0.012213	0	0
ZNF414	84330	broad.mit.edu	37	19	8576722	8576722	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:8576722G>A	uc002mkf.2	-	5	771	c.653C>T	c.(652-654)CCC>CTC	p.P218L	ZNF414_uc002mke.3_Missense_Mutation_p.P218L|ZNF414_uc010dwf.2_Missense_Mutation_p.P207L	NM_032370	NP_115746	Q96IQ9	ZN414_HUMAN	zinc finger protein 414 isoform 2	218					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTCCGGCGCGGGCGGCTCTCG	0.751													8	6					0	0	0.004482	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8656921	8656921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:8656921G>A	uc002mkj.1	-	14	1928	c.1654C>T	c.(1654-1656)CCG>TCG	p.P552S	ADAMTS10_uc002mki.1_Silent_p.G42G|ADAMTS10_uc002mkk.1_Missense_Mutation_p.P184S	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	552	TSP type-1 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						GGAGTCCACGGCCCCCAGGCT	0.682													23	9					0	0	0.004656	0	0
MUC16	94025	broad.mit.edu	37	19	9007535	9007535	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:9007535C>G	uc002mkp.2	-	43	39637	c.39433G>C	c.(39433-39435)GTT>CTT	p.V13145L	MUC16_uc010dwi.2_5'Flank|MUC16_uc010dwj.2_5'Flank|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13147	Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCAAGGTCAACTGTGGAAGTC	0.527													8	27					0	0	0.003080	0	0
MUC16	94025	broad.mit.edu	37	19	9061785	9061785	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:9061785G>A	uc002mkp.2	-	3	25865	c.25661C>T	c.(25660-25662)TCT>TTT	p.S8554F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8556	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCTTCCACAGAGGGAAGGCT	0.507													10	19					0	0	0.006214	0	0
MUC16	94025	broad.mit.edu	37	19	9076829	9076829	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:9076829G>A	uc002mkp.2	-	3	10821	c.10617C>T	c.(10615-10617)TCC>TCT	p.S3539S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3540	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGATGGTGGTGGAGATACCTG	0.542													47	118					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	9085565	9085565	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:9085565T>C	uc002mkp.2	-	1	6454	c.6250A>G	c.(6250-6252)AGT>GGT	p.S2084G		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2084	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTAGTTGAACTTGGGTTTGAA	0.483													41	121					0	0	0.010771	0	0
MUC16	94025	broad.mit.edu	37	19	9086535	9086535	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:9086535C>T	uc002mkp.2	-	1	5484	c.5280G>A	c.(5278-5280)GTG>GTA	p.V1760V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1760	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTATGAATTCCACATCAGGAG	0.498													16	58					0	0	0.003163	0	0
ZNF560	147741	broad.mit.edu	37	19	9577647	9577647	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:9577647T>A	uc002mlp.1	-	10	2186	c.1976A>T	c.(1975-1977)AAT>ATT	p.N659I	ZNF560_uc010dwr.1_Missense_Mutation_p.N553I	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	659	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						TTCACATGCATTACATTTATA	0.388													42	32					0	0	0.008740	0	0
ZNF440	126070	broad.mit.edu	37	19	11942602	11942602	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:11942602T>A	uc002msp.1	+	4	767	c.611T>A	c.(610-612)TTT>TAT	p.F204Y		NM_152357	NP_689570	Q8IYI8	ZN440_HUMAN	zinc finger protein 440	204	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAATGTAAGTTTTGTGGGAAA	0.373													33	63					0	0	0.003755	0	0
RFX1	5989	broad.mit.edu	37	19	14083763	14083763	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:14083763G>A	uc002mxv.2	-	9	1378	c.1106C>T	c.(1105-1107)TCC>TTC	p.S369F	RFX1_uc010dzi.2_Missense_Mutation_p.S369F	NM_002918	NP_002909	P22670	RFX1_HUMAN	regulatory factor X1	369					immune response	nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			lung(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(19;6.67e-23)			AGTGCTGGTGGAGCTGGCGAC	0.463													3	12					0	0	0.004672	0	0
LPHN1	22859	broad.mit.edu	37	19	14274081	14274081	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:14274081G>A	uc010xnn.1	-	6	843	c.547C>T	c.(547-549)CGC>TGC	p.R183C	LPHN1_uc010xno.1_Missense_Mutation_p.R178C|uc002myf.2_Intron	NM_001008701	NP_001008701	O94910	LPHN1_HUMAN	latrophilin 1 isoform 1 precursor	183	Olfactomedin-like.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			ovary(2)|lung(2)|central_nervous_system(1)	5						GTGTCCGTGCGGTAGGGGATC	0.657													18	32					0	0	0.004990	0	0
GIPC1	10755	broad.mit.edu	37	19	14589320	14589320	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:14589320G>A	uc002myt.2	-	9	1180	c.910C>T	c.(910-912)CTG>TTG	p.L304L	GIPC1_uc002myu.2_Silent_p.L304L|GIPC1_uc002myv.2_Silent_p.L207L|GIPC1_uc002myw.2_Silent_p.L207L|GIPC1_uc002myx.2_Silent_p.L304L|GIPC1_uc002myy.2_Silent_p.L207L	NM_005716	NP_005707	O14908	GIPC1_HUMAN	regulator of G-protein signalling 19 interacting	304					endothelial cell migration|G-protein coupled receptor protein signaling pathway|glutamate secretion|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|protein targeting|regulation of protein stability|regulation of synaptic plasticity|synaptic transmission	cell cortex|dendritic shaft|dendritic spine|membrane fraction|soluble fraction|synaptic vesicle|vesicle membrane	actin binding|myosin binding|protein homodimerization activity|receptor binding				0						CGTTCGTCCAGGGCCTCGGCC	0.622													21	18					0	0	0.008871	0	0
CHERP	10523	broad.mit.edu	37	19	16632418	16632418	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:16632418G>A	uc002nei.1	-	12	2102	c.2028C>T	c.(2026-2028)CTC>CTT	p.L676L	MED26_uc002nee.2_Intron|CHERP_uc010xpg.1_Silent_p.L215L	NM_006387	NP_006378	Q8IWX8	CHERP_HUMAN	calcium homeostasis endoplasmic reticulum	676	Pro-rich.				cellular calcium ion homeostasis|negative regulation of cell proliferation|nervous system development|RNA processing	endoplasmic reticulum|perinuclear region of cytoplasm	RNA binding			ovary(2)	2						TGGGGGGTGGGAGGCGGATGT	0.652													20	24					0	0	0.012319	0	0
TMEM38A	79041	broad.mit.edu	37	19	16799182	16799182	+	Nonstop_Mutation	SNP	G	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:16799182G>C	uc002nes.2	+	6	991	c.900G>C	c.(898-900)TAG>TAC	p.*300Y		NM_024074	NP_076979	Q9H6F2	TM38A_HUMAN	transmembrane protein 38A	300						integral to membrane|nuclear membrane|sarcoplasmic reticulum membrane	potassium channel activity			central_nervous_system(2)|ovary(1)	3						AGGCGGATTAGGGGGTGGCCC	0.582													11	22					0	0	0.010729	0	0
MYO9B	4650	broad.mit.edu	37	19	17305746	17305747	+	Nonsense_Mutation	DNP	GG	AT	AT			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:17305746_17305747GG>AT	uc010eak.2	+	22	3662_3663	c.3510_3511GG>AT	c.(3508-3513)AAGGAG>AAATAG	p.E1171*	MYO9B_uc002nfi.2_Nonsense_Mutation_p.E1171*|MYO9B_uc002nfj.1_Nonsense_Mutation_p.E1171*	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	1171	Tail.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						AGTCCTGCAAGGAGGAGAGTGC	0.559													17	40					0	0	0.004672	0	0
DMKN	93099	broad.mit.edu	37	19	36001153	36001153	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:36001153C>T	uc002nzm.3	-	6	1103	c.920G>A	c.(919-921)GGA>GAA	p.G307E	DMKN_uc002nzj.2_5'UTR|DMKN_uc002nzk.3_5'UTR|DMKN_uc002nzl.3_Missense_Mutation_p.G20E|DMKN_uc002nzo.3_Missense_Mutation_p.G246E|DMKN_uc002nzn.3_Missense_Mutation_p.G246E|DMKN_uc002nzw.2_5'UTR|DMKN_uc002nzr.2_5'UTR|DMKN_uc002nzp.2_5'UTR|DMKN_uc002nzq.2_5'UTR|DMKN_uc002nzt.2_5'UTR|DMKN_uc002nzs.2_5'UTR|DMKN_uc002nzu.2_5'UTR|DMKN_uc002nzv.2_5'UTR|DMKN_uc010xsv.1_5'UTR|DMKN_uc010xsw.1_Missense_Mutation_p.G20E|DMKN_uc002nzx.3_RNA|DMKN_uc002nzy.3_RNA|DMKN_uc002nzz.2_RNA|DMKN_uc002oac.3_Missense_Mutation_p.G307E|DMKN_uc010eeb.2_Missense_Mutation_p.G307E|DMKN_uc002oaa.3_Missense_Mutation_p.G307E|DMKN_uc002oab.3_Missense_Mutation_p.G307E	NM_033317	NP_201574	Q6E0U4	DMKN_HUMAN	dermokine isoform 2 precursor	307	Gly-rich.					extracellular region				large_intestine(1)|ovary(1)|skin(1)	3	all_lung(56;1.89e-08)|Lung NSC(56;2.9e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			GGTGCTGGATCCCTGCAGGGG	0.582											OREG0025431	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	5					0	0	0.004672	0	0
ZNF420	147923	broad.mit.edu	37	19	37618929	37618929	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:37618929C>T	uc002ofl.2	+	5	1251	c.1036C>T	c.(1036-1038)CGG>TGG	p.R346W		NM_144689	NP_653290	Q8TAQ5	ZN420_HUMAN	zinc finger protein 420	346	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GGCCTTTATTCGGGGCTCACT	0.408													38	31					0	0	0.005524	0	0
ZNF793	390927	broad.mit.edu	37	19	38028549	38028549	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:38028549G>A	uc010efm.2	+	8	1431	c.989G>A	c.(988-990)CGA>CAA	p.R330Q	ZNF793_uc010xts.1_Missense_Mutation_p.R330Q|ZNF793_uc010efo.2_Intron	NM_001013659	NP_001013681	Q6ZN11	ZN793_HUMAN	zinc finger protein 793	330	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AATGTACATCGAAAAATGCAC	0.458													9	16					0	0	0.006214	0	0
RYR1	6261	broad.mit.edu	37	19	38959954	38959954	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:38959954C>T	uc002oit.2	+	27	3696	c.3566C>T	c.(3565-3567)CCC>CTC	p.P1189L	RYR1_uc002oiu.2_Missense_Mutation_p.P1189L	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1189	6 X approximate repeats.|Cytoplasmic.|B30.2/SPRY 2.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GGCTTCCTGCCCGTCTGCAGC	0.353													17	57					0	0	0.004007	0	0
RYR1	6261	broad.mit.edu	37	19	38996454	38996454	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:38996454G>A	uc002oit.2	+	54	8539	c.8409G>A	c.(8407-8409)GAG>GAA	p.E2803E	RYR1_uc002oiu.2_Silent_p.E2803E|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2803	5.|Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	AGGACAAAGAGATTTACCGCT	0.567													8	29					0	0	0.004482	0	0
PAPL	390928	broad.mit.edu	37	19	39589776	39589776	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:39589776C>T	uc002oki.2	+	4	773	c.499C>T	c.(499-501)CAT>TAT	p.H167Y	PAPL_uc010egl.2_Missense_Mutation_p.H167Y	NM_001004318	NP_001004318	Q6ZNF0	PAPL_HUMAN	iron/zinc purple acid phosphatase-like protein	167						extracellular region	acid phosphatase activity|metal ion binding				0						CGCCGTTCTCCATGTGGGTGA	0.388													16	44					0	0	0.007413	0	0
FCGBP	8857	broad.mit.edu	37	19	40424418	40424418	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:40424418C>T	uc002omp.3	-	4	1793	c.1785G>A	c.(1783-1785)CTG>CTA	p.L595L		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	595	VWFD 1.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GGCTGAGTGCCAGCTGGCAGT	0.632													12	36					0	0	0.010729	0	0
CEACAM5	1048	broad.mit.edu	37	19	42225069	42225069	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:42225069T>C	uc002ork.2	+	8	2120	c.1999T>C	c.(1999-2001)TCC>CCC	p.S667P	CEACAM5_uc002orj.1_Missense_Mutation_p.S666P|CEACAM5_uc002orl.2_Missense_Mutation_p.S667P	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	667	Ig-like 7.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		CCGCAATAATTCCATAGTCAA	0.468													16	48					0	0	0.004990	0	0
RPS19	6223	broad.mit.edu	37	19	42373237	42373237	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:42373237C>T	uc002ort.2	+	4	681	c.309C>T	c.(307-309)GTC>GTT	p.V103V		NM_001022	NP_001013	P39019	RS19_HUMAN	ribosomal protein S19	103					endocrine pancreas development|erythrocyte differentiation|gas transport|positive regulation of cellular component movement|response to extracellular stimulus|ribosomal small subunit biogenesis|rRNA processing|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit|nucleolus	protein binding|RNA binding|structural constituent of ribosome				0						CCCGCCGGGTCCTCCAAGCCC	0.607									Diamond-Blackfan_Anemia				8	29					0	0	0.004482	0	0
PSG1	5669	broad.mit.edu	37	19	43373139	43373139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:43373139C>T	uc002ovb.2	-	4	895	c.757G>A	c.(757-759)GAG>AAG	p.E253K	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Missense_Mutation_p.E253K|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Missense_Mutation_p.E253K|PSG1_uc010eio.1_Missense_Mutation_p.E253K|PSG1_uc002oux.1_Missense_Mutation_p.E182K|PSG1_uc002ouy.1_Intron|PSG1_uc002ouz.1_Missense_Mutation_p.E253K|PSG1_uc002ova.1_Missense_Mutation_p.E160K|PSG1_uc002ovc.2_Missense_Mutation_p.E160K|PSG1_uc002ovd.1_Missense_Mutation_p.E253K	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	253	Ig-like C2-type 2.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				TCCTTATTCTCCCTGGGGTTT	0.488													93	93					0	0	0.014410	0	0
PSG1	5669	broad.mit.edu	37	19	43382078	43382078	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:43382078G>A	uc002ovb.2	-	2	555	c.417C>T	c.(415-417)ACC>ACT	p.T139T	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Silent_p.T139T|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Silent_p.T139T|PSG1_uc010eio.1_Silent_p.T139T|PSG1_uc002oux.1_Silent_p.T68T|PSG1_uc002ouy.1_Silent_p.T139T|PSG1_uc002ouz.1_Silent_p.T139T|PSG1_uc002ova.1_Silent_p.T139T|PSG1_uc002ovc.2_Silent_p.T139T|PSG1_uc002ovd.1_Silent_p.T139T	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	139	Ig-like V-type.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				GTAAGGTGAAGGTGAAACGTC	0.527													106	80					0	0	0.014410	0	0
HIF3A	64344	broad.mit.edu	37	19	46838214	46838214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:46838214C>T	uc002peh.2	+	14	1912	c.1883C>T	c.(1882-1884)ACC>ATC	p.T628I	HIF3A_uc002pej.1_Missense_Mutation_p.T415I|HIF3A_uc002pek.2_Missense_Mutation_p.T572I|HIF3A_uc010xxy.1_Missense_Mutation_p.T559I|HIF3A_uc002pel.2_Missense_Mutation_p.T626I|HIF3A_uc010xxz.1_Missense_Mutation_p.T577I	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	628					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		GACCCCAGCACCCCACTCCTG	0.597													26	32					0	0	0.005443	0	0
ZC3H4	23211	broad.mit.edu	37	19	47569895	47569896	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:47569895_47569896GG>AA	uc002pga.3	-	15	3667_3668	c.3629_3630CC>TT	c.(3628-3630)ACC>ATT	p.T1210I	ZC3H4_uc002pgb.1_RNA	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4	1210							nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		TGTCCGTGGGGGTGCCCCCATC	0.693													21	9					0	0	0.004672	0	0
FGF21	26291	broad.mit.edu	37	19	49259616	49259616	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:49259616G>A	uc002pkn.1	+	2	695	c.123G>A	c.(121-123)GGG>GGA	p.G41G	FUT1_uc002pkk.2_5'Flank|FUT1_uc002pkl.1_5'Flank|FUT1_uc002pkm.1_5'Flank|FGF21_uc002pko.1_Silent_p.G41G	NM_019113	NP_061986	Q9NSA1	FGF21_HUMAN	fibroblast growth factor 21 precursor	41					cell-cell signaling|positive regulation of ERK1 and ERK2 cascade|positive regulation of glucose import	extracellular region|soluble fraction	growth factor activity			breast(1)	1		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		TGCAATTCGGGGGCCAAGTCC	0.632													12	27					0	0	0.001855	0	0
MED25	81857	broad.mit.edu	37	19	50333362	50333362	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:50333362C>T	uc002ppw.1	+	7	759	c.706C>T	c.(706-708)CCA>TCA	p.P236S	MED25_uc010ybe.1_Intron|MED25_uc002ppx.1_Missense_Mutation_p.P17S	NM_030973	NP_112235	Q71SY5	MED25_HUMAN	mediator complex subunit 25	236	Pro-rich.			P -> L (in Ref. 2; CAE84581 and 4; CAB66680).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm				ovary(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00822)|GBM - Glioblastoma multiforme(134;0.0122)		TGGCTCAGCCCCAGGCCCCCT	0.632													24	103					0	0	0.005443	0	0
HAS1	3036	broad.mit.edu	37	19	52222589	52222590	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:52222589_52222590GG>AA	uc002pxo.1	-	2	606_607	c.571_572CC>TT	c.(571-573)CCT>TTT	p.P191F	HAS1_uc010epc.1_5'Flank|HAS1_uc010epd.1_Missense_Mutation_p.P156F|HAS1_uc002pxn.1_Missense_Mutation_p.P198F|HAS1_uc002pxp.1_Missense_Mutation_p.P190F	NM_001523	NP_001514	Q92839	HAS1_HUMAN	hyaluronan synthase 1	191	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane	hyaluronan synthase activity|protein binding			ovary(1)|pancreas(1)	2		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00102)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		CAGCCGCCCAGGATCCTCCGCC	0.579													4	13					0	0	0.004672	0	0
FPR3	2359	broad.mit.edu	37	19	52327427	52327427	+	Silent	SNP	C	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:52327427C>A	uc002pxt.1	+	2	610	c.426C>A	c.(424-426)GCC>GCA	p.A142A		NM_002030	NP_002021	P25089	FPR3_HUMAN	formyl peptide receptor-like 2	142	Helical; Name=4; (Potential).				cellular component movement|chemotaxis	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(4)|breast(1)|skin(1)	6						TGAGTCTGGCCAAGAGGGTGA	0.483													12	38					0.000978159	0.00108322	0.010729	1	0
ZNF160	90338	broad.mit.edu	37	19	53572807	53572807	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:53572807T>A	uc010eqk.2	-	7	1396	c.980A>T	c.(979-981)TAC>TTC	p.Y327F	ZNF160_uc002qaq.3_Missense_Mutation_p.Y327F|ZNF160_uc002qar.3_Missense_Mutation_p.Y327F	NM_001102603	NP_001096073	Q9HCG1	ZN160_HUMAN	zinc finger protein 160	327	C2H2-type 3.				hemopoiesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(134;0.02)		AGTTGCAAGGTATGAATTGTG	0.403													18	59					0	0	0.004990	0	0
ZNF677	342926	broad.mit.edu	37	19	53741769	53741769	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:53741769C>T	uc002qbf.1	-	5	396	c.211G>A	c.(211-213)GAA>AAA	p.E71K	ZNF677_uc002qbg.1_Missense_Mutation_p.E71K	NM_182609	NP_872415	Q86XU0	ZN677_HUMAN	zinc finger protein 677	71	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00352)		TTATTATTTTCCTTTGGTGAT	0.338													10	43					0	0	0.008291	0	0
ZNF677	342926	broad.mit.edu	37	19	53747073	53747073	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:53747073G>A	uc002qbf.1	-	4	278	c.93C>T	c.(91-93)GCC>GCT	p.A31A	ZNF677_uc002qbg.1_Silent_p.A31A|ZNF677_uc002qbh.2_RNA	NM_182609	NP_872415	Q86XU0	ZN677_HUMAN	zinc finger protein 677	31	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00352)		CCCTGTACAAGGCCCTCTGGG	0.483													38	23					0	0	0.004878	0	0
BIRC8	112401	broad.mit.edu	37	19	53793072	53793072	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:53793072C>T	uc002qbk.2	-	1	1804	c.556G>A	c.(556-558)GAG>AAG	p.E186K		NM_033341	NP_203127	Q96P09	BIRC8_HUMAN	baculoviral IAP repeat-containing 8	186					apoptosis		zinc ion binding			lung(1)	1				GBM - Glioblastoma multiforme(134;0.00304)		CAAAGCTTCTCCTCTTGCAGA	0.433													21	39					0	0	0.008871	0	0
LILRB2	10288	broad.mit.edu	37	19	54782844	54782844	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:54782844C>T	uc002qfb.2	-	6	1044	c.778G>A	c.(778-780)GGG>AGG	p.G260R	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Missense_Mutation_p.G260R|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Missense_Mutation_p.G260R|LILRB2_uc010yet.1_Missense_Mutation_p.G144R|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	260	Extracellular (Potential).|Ig-like C2-type 3.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TCACGTTCCCCCTCCTTGTAC	0.647													14	47					0	0	0.002450	0	0
LILRA5	353514	broad.mit.edu	37	19	54818732	54818732	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:54818732C>T	uc002qfe.2	-	7	986	c.866G>A	c.(865-867)AGC>AAC	p.S289N	LILRA5_uc002qff.2_Missense_Mutation_p.S277N	NM_021250	NP_067073	A6NI73	LIRA5_HUMAN	leukocyte immunoglobulin-like receptor subfamily	289	Helical; (Potential).				innate immune response	extracellular region|integral to membrane	receptor activity			upper_aerodigestive_tract(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GCTTCTCTGGCTGTGCCAATC	0.522													16	51					0	0	0.004007	0	0
NLRP4	147945	broad.mit.edu	37	19	56370173	56370173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:56370173C>T	uc002qmd.3	+	3	1836	c.1414C>T	c.(1414-1416)CAT>TAT	p.H472Y	NLRP4_uc002qmf.2_Missense_Mutation_p.H397Y|NLRP4_uc010etf.2_Missense_Mutation_p.H303Y	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	472	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		CCACCTTGATCATCCTCACCC	0.478													37	75					0	0	0.004289	0	0
NLRP13	126204	broad.mit.edu	37	19	56424631	56424631	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:56424631C>T	uc010ygg.1	-	5	577	c.552G>A	c.(550-552)ATG>ATA	p.M184I		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	184							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		GTTCAGCCTTCATGTTCTCTC	0.433													34	123					0	0	0.004289	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56704196	56704196	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:56704196C>T	uc010ygh.1	-	1	226	c.226G>A	c.(226-228)GAC>AAC	p.D76N		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	76	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						GTGTGGAGGTCGGGCCTCAGC	0.557													16	10					0	0	0.004007	0	0
ZNF211	10520	broad.mit.edu	37	19	58146045	58146045	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:58146045T>C	uc002qpq.2	+	2	319	c.139T>C	c.(139-141)TGG>CGG	p.W47R	ZNF211_uc010yhb.1_Missense_Mutation_p.W51R|ZNF211_uc002qpp.2_Missense_Mutation_p.W60R|ZNF211_uc002qpr.2_Missense_Mutation_p.W59R|ZNF211_uc002qps.2_Missense_Mutation_p.W60R|ZNF211_uc002qpt.2_Missense_Mutation_p.W59R|ZNF211_uc010yhc.1_Missense_Mutation_p.W59R|ZNF211_uc010yhd.1_5'UTR|ZNF211_uc010yhe.1_5'UTR	NM_198855	NP_942152	Q13398	ZN211_HUMAN	zinc finger protein 211 isoform 2	47	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CTGGGAGGAATGGGATCTCCT	0.483													41	41					0	0	0.008740	0	0
ZNF671	79891	broad.mit.edu	37	19	58238788	58238788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr19:58238788G>A	uc002qpz.3	-	1	208	c.109C>T	c.(109-111)CCT>TCT	p.P37S	ZNF776_uc002qpx.2_Intron|ZNF671_uc010eug.2_5'UTR|ZNF671_uc010yhf.1_5'UTR	NM_024833	NP_079109	Q8TAW3	ZN671_HUMAN	zinc finger protein 671	37					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		TCCGCCATAGGACCGTGGGCG	0.687													6	14					0	0	0.001168	0	0
SNTG2	54221	broad.mit.edu	37	2	1243529	1243529	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:1243529G>A	uc002qwq.2	+	11	997	c.869G>A	c.(868-870)TGC>TAC	p.C290Y	SNTG2_uc010ewi.2_Missense_Mutation_p.C163Y	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	290					central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		GCGAACAAATGCTGCTCTCCT	0.478													9	17					0	0	0.008291	0	0
ODC1	4953	broad.mit.edu	37	2	10580980	10580980	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:10580980T>C	uc010exg.1	-	12	1690	c.1256A>G	c.(1255-1257)CAA>CGA	p.Q419R	ODC1_uc002ran.1_Missense_Mutation_p.Q105R|ODC1_uc002rao.1_Missense_Mutation_p.Q419R|ODC1_uc010yjd.1_Missense_Mutation_p.Q289R	NM_002539	NP_002530	P11926	DCOR_HUMAN	ornithine decarboxylase 1	419					polyamine biosynthetic process|regulation of cellular amino acid metabolic process|response to virus	cytosol	ornithine decarboxylase activity|protein binding			ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.161)	Pyridoxal Phosphate(DB00114)|Spermine(DB00127)	GTTCTGGAATTGCTGCATGAG	0.498													29	54					0	0	0.009535	0	0
KCNS3	3790	broad.mit.edu	37	2	18113407	18113407	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:18113407C>T	uc002rcv.2	+	3	1583	c.1132C>T	c.(1132-1134)CCG>TCG	p.P378S	KCNS3_uc002rcw.2_Missense_Mutation_p.P378S	NM_002252	NP_002243	Q9BQ31	KCNS3_HUMAN	potassium voltage-gated channel	378	Segment H5 (pore-forming) (Potential).				energy reserve metabolic process|regulation of insulin secretion	Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity	p.P378L(1)		ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					AGACACCCACCCGGTCACCTT	0.557													29	29					0	0	0.006320	0	0
APOB	338	broad.mit.edu	37	2	21250882	21250882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:21250882C>T	uc002red.2	-	14	2013	c.1885G>A	c.(1885-1887)GAC>AAC	p.D629N		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	629	Vitellogenin.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTTCTGAAGTCCATGACAGTT	0.363													115	322					0	0	0.014410	0	0
GPR113	165082	broad.mit.edu	37	2	26539791	26539791	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:26539791C>T	uc002rhe.3	-	4	491	c.491G>A	c.(490-492)AGA>AAA	p.R164K	GPR113_uc010yky.1_Missense_Mutation_p.R95K|GPR113_uc002rhb.1_5'UTR|GPR113_uc010eyk.1_Missense_Mutation_p.R105K|GPR113_uc002rhc.1_Intron|GPR113_uc002rhd.1_RNA	NM_001145168	NP_001138640	Q8IZF5	GP113_HUMAN	G-protein coupled receptor 113 isoform 1	164	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGTTGTGAGTCTGAGGCCAGT	0.592													20	18					0	0	0.010504	0	0
CLIP4	79745	broad.mit.edu	37	2	29356623	29356623	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:29356623C>T	uc002rmv.2	+	5	709	c.470C>T	c.(469-471)GCT>GTT	p.A157V	CLIP4_uc002rmu.2_Missense_Mutation_p.A157V|CLIP4_uc010ezm.1_Missense_Mutation_p.A157V|CLIP4_uc002rmw.2_RNA|CLIP4_uc010ymn.1_Missense_Mutation_p.A139V	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	157	ANK 2.									ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					TTGCATTATGCTGCTTATTTT	0.368													13	27					0	0	0.001855	0	0
XDH	7498	broad.mit.edu	37	2	31560586	31560586	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:31560586A>G	uc002rnv.1	-	35	3951	c.3872T>C	c.(3871-3873)GTG>GCG	p.V1291A		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	1291					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	GAGTTCCTTCACGTTATTACC	0.567													52	36					0	0	0.014410	0	0
XDH	7498	broad.mit.edu	37	2	31621532	31621532	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:31621532C>T	uc002rnv.1	-	5	419	c.340G>A	c.(340-342)GGG>AGG	p.G114R		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	114					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	GTGCAGAACCCGCACTGGGAG	0.552													34	106					0	0	0.013726	0	0
TTC27	55622	broad.mit.edu	37	2	32875264	32875264	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:32875264C>T	uc002rom.2	+	5	835	c.604C>T	c.(604-606)CTG>TTG	p.L202L	TTC27_uc010ymx.1_Silent_p.L152L	NM_017735	NP_060205	Q6P3X3	TTC27_HUMAN	tetratricopeptide repeat domain 27	202							protein binding			central_nervous_system(1)	1						ACGCTCACCTCTGCTTTTTAC	0.398													27	78					0	0	0.006320	0	0
PKDCC	91461	broad.mit.edu	37	2	42284396	42284396	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:42284396G>A	uc002rsg.2	+	6	1437	c.1258G>A	c.(1258-1260)GAA>AAA	p.E420K		NM_138370	NP_612379	Q504Y2	PKDCC_HUMAN	protein kinase-like protein SgK493	420	Protein kinase.				cell differentiation|embryonic digestive tract development|lung alveolus development|negative regulation of Golgi to plasma membrane protein transport|ossification|palate development|positive regulation of bone mineralization|positive regulation of chondrocyte differentiation|protein transport	Golgi apparatus	ATP binding|protein kinase activity			breast(1)	1						CATCCCCCAGGAAGACTACCG	0.557													63	54					0	0	0.014410	0	0
OXER1	165140	broad.mit.edu	37	2	42990265	42990265	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:42990265G>A	uc002rss.2	-	1	1137	c.1055C>T	c.(1054-1056)CCC>CTC	p.P352L		NM_148962	NP_683765	Q8TDS5	OXER1_HUMAN	G-protein coupled receptor TG1019	352	Helical; Name=7; (Potential).				regulation of cAMP biosynthetic process	integral to membrane|plasma membrane	5(S)-hydroxyperoxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding|5-hydroxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding|5-oxo-6E,8Z,11Z,14Z-icosatetraenoic acid binding|G-protein coupled receptor activity			breast(1)	1						GTAGAGCACGGGGTCCAGGAC	0.652													22	21					0	0	0.014323	0	0
SRBD1	55133	broad.mit.edu	37	2	45774702	45774702	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:45774702G>A	uc002rus.2	-	13	1801	c.1725C>T	c.(1723-1725)TTC>TTT	p.F575F	SRBD1_uc010yoc.1_Silent_p.F94F	NM_018079	NP_060549	Q8N5C6	SRBD1_HUMAN	S1 RNA binding domain 1	575					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		hydrolase activity, acting on ester bonds|RNA binding			central_nervous_system(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)	LUSC - Lung squamous cell carcinoma(58;0.0917)|Lung(47;0.154)			CCGCCTCTCGGAAGCCTTGTC	0.328													10	19					0	0	0.010729	0	0
NRXN1	9378	broad.mit.edu	37	2	50780137	50780137	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:50780137C>T	uc010fbq.2	-	9	2944	c.1467G>A	c.(1465-1467)AGG>AGA	p.R489R	NRXN1_uc002rxb.3_Silent_p.R121R|NRXN1_uc002rxe.3_Silent_p.R449R|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			ATAATTCCAGCCTCACATCAT	0.393													18	89					0	0	0.012319	0	0
NRXN1	9378	broad.mit.edu	37	2	50847263	50847263	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:50847263G>A	uc010fbq.2	-	8	2814	c.1337C>T	c.(1336-1338)ACC>ATC	p.T446I	NRXN1_uc002rxb.3_Missense_Mutation_p.T78I|NRXN1_uc002rxe.3_Missense_Mutation_p.T406I|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CCCCAGCATGGTATAATCTTC	0.478													17	16					0	0	0.004990	0	0
DYSF	8291	broad.mit.edu	37	2	71741043	71741043	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:71741043G>A	uc002sie.2	+	6	1031	c.655G>A	c.(655-657)GAT>AAT	p.D219N	DYSF_uc010feg.2_Missense_Mutation_p.D250N|DYSF_uc010feh.2_Missense_Mutation_p.D219N|DYSF_uc002sig.3_Missense_Mutation_p.D219N|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.D219N|DYSF_uc010fef.2_Missense_Mutation_p.D250N|DYSF_uc010fei.2_Missense_Mutation_p.D250N|DYSF_uc010fek.2_Missense_Mutation_p.D251N|DYSF_uc010fej.2_Missense_Mutation_p.D220N|DYSF_uc010fel.2_Missense_Mutation_p.D220N|DYSF_uc010feo.2_Missense_Mutation_p.D251N|DYSF_uc010fem.2_Missense_Mutation_p.D220N|DYSF_uc010fen.2_Missense_Mutation_p.D251N|DYSF_uc002sif.2_Missense_Mutation_p.D220N	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	219	Cytoplasmic (Potential).|C2 2.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CAAACCGCAGGATTTCCAGGT	0.572													5	24					0	0	0.000602	0	0
KCMF1	56888	broad.mit.edu	37	2	85270737	85270738	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:85270737_85270738GG>AA	uc002sox.3	+	4	719_720	c.375_376GG>AA	c.(373-378)ACGGAT>ACAAAT	p.D126N		NM_020122	NP_064507	Q9P0J7	KCMF1_HUMAN	potassium channel modulatory factor 1	126						intracellular	ligase activity|zinc ion binding			ovary(2)	2						ATCATGTCACGGATGACTTTGC	0.381													15	19					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	2	89156800	89156800	+	RNA	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:89156800G>A	uc002sti.1	-	1		c.3475C>T			uc002stj.1_RNA					Homo sapiens cDNA FLJ46682 fis, clone TRACH3011082, moderately similar to Ig kappa chain V-III region HAH precursor.																		GTCCCCTGTGGAAAAAGGGTC	0.547													4	11					0	0	0.009096	0	0
PROM2	150696	broad.mit.edu	37	2	95942031	95942031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:95942031C>T	uc002suh.1	+	4	687	c.554C>T	c.(553-555)CCC>CTC	p.P185L	PROM2_uc002sui.2_Missense_Mutation_p.P185L|PROM2_uc002suj.2_5'UTR|PROM2_uc002suk.2_Missense_Mutation_p.P185L|PROM2_uc002sul.2_5'UTR	NM_144707	NP_653308	Q8N271	PROM2_HUMAN	prominin 2 precursor	185	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|cilium membrane|integral to membrane|microvillus membrane				ovary(1)	1						CAGATGGGCCCCAGCATCGAG	0.607													19	61					0	0	0.007413	0	0
PROM2	150696	broad.mit.edu	37	2	95954256	95954257	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:95954256_95954257GG>AA	uc002suh.1	+	22	2493_2494	c.2360_2361GG>AA	c.(2359-2361)TGG>TAA	p.W787*	PROM2_uc002sui.2_Nonsense_Mutation_p.W787*|PROM2_uc002suj.2_Nonsense_Mutation_p.W441*|PROM2_uc002suk.2_Nonsense_Mutation_p.W787*|PROM2_uc002sul.2_Nonsense_Mutation_p.W313*|PROM2_uc002sum.2_RNA	NM_144707	NP_653308	Q8N271	PROM2_HUMAN	prominin 2 precursor	787	Helical; (Potential).					apical plasma membrane|basolateral plasma membrane|cilium membrane|integral to membrane|microvillus membrane				ovary(1)	1						TGCCTGGCATGGTGCACCTTCT	0.594													19	54					0	0	0.004672	0	0
VWA3B	200403	broad.mit.edu	37	2	98846523	98846523	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:98846523G>A	uc002syo.2	+	16	2425	c.2161G>A	c.(2161-2163)GAA>AAA	p.E721K	VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Missense_Mutation_p.E240K|VWA3B_uc002sym.2_Missense_Mutation_p.E721K|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.E378K|VWA3B_uc002syp.1_Missense_Mutation_p.E113K|VWA3B_uc002syq.1_5'UTR|VWA3B_uc002syr.1_Missense_Mutation_p.E38K	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	721										ovary(3)|large_intestine(2)|skin(1)	6						GCATCAAAAGGAAATCTGTTC	0.358													15	28					0	0	0.004007	0	0
MGAT4A	11320	broad.mit.edu	37	2	99272887	99272887	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:99272887G>A	uc002sze.2	-	7	940	c.626C>T	c.(625-627)TCA>TTA	p.S209L	MGAT4A_uc010yvm.1_Missense_Mutation_p.S81L|MGAT4A_uc010fil.2_5'UTR|MGAT4A_uc010fim.1_Missense_Mutation_p.S81L	NM_012214	NP_036346	Q9UM21	MGT4A_HUMAN	alpha-1,3-mannosyl-glycoprotein	209	Lumenal (Potential).				N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	extracellular region|Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			skin(1)	1						TTCAGGGGGTGATATGACTTC	0.373													57	61					0	0	0.014410	0	0
IL1RL1	9173	broad.mit.edu	37	2	102959875	102959875	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:102959875A>C	uc002tbu.1	+	8	1241	c.970A>C	c.(970-972)ATT>CTT	p.I324L	IL1RL1_uc010ywa.1_Missense_Mutation_p.S207R|IL18R1_uc002tbw.3_Intron|IL1RL1_uc002tbv.2_Missense_Mutation_p.S324R	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	324	Extracellular (Potential).				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						GAAAAATCCAAGTAAGGAGTG	0.443													59	52					0	0	0.014410	0	0
TGFBRAP1	9392	broad.mit.edu	37	2	105883952	105883952	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:105883952G>A	uc002tcq.2	-	12	2555	c.2471C>T	c.(2470-2472)CCC>CTC	p.P824L	TGFBRAP1_uc010fjc.2_Missense_Mutation_p.P593L|TGFBRAP1_uc002tcr.3_Missense_Mutation_p.P824L|uc002tcp.2_5'Flank	NM_004257	NP_004248	Q8WUH2	TGFA1_HUMAN	transforming growth factor, beta receptor	824					regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|membrane	SMAD binding|small GTPase regulator activity|transforming growth factor beta receptor binding			central_nervous_system(1)|skin(1)	2						CTCACAAAAGGGATTTTGGCA	0.473													21	46					0	0	0.014323	0	0
NCK2	8440	broad.mit.edu	37	2	106497949	106497949	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:106497949C>T	uc002tdg.2	+	4	834	c.392C>T	c.(391-393)TCC>TTC	p.S131F	NCK2_uc002tdh.2_Intron|NCK2_uc002tdi.2_Missense_Mutation_p.S131F	NM_003581	NP_003572	O43639	NCK2_HUMAN	NCK adaptor protein 2 isoform A	131	SH3 2.				axon guidance|epidermal growth factor receptor signaling pathway|negative regulation of cell proliferation|positive regulation of actin filament polymerization|positive regulation of T cell proliferation|regulation of epidermal growth factor receptor activity|regulation of translation|signal complex assembly|T cell activation	cytosol|endoplasmic reticulum	cytoskeletal adaptor activity|receptor signaling complex scaffold activity			ovary(1)|lung(1)	2						GATGAGTTGTCCCTGGTGAAG	0.642													14	36					0	0	0.002450	0	0
RGPD3	653489	broad.mit.edu	37	2	107041611	107041611	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:107041611C>T	uc010ywi.1	-	20	2869	c.2812G>A	c.(2812-2814)GAA>AAA	p.E938K		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	938					intracellular transport		binding			ovary(1)	1						AGAGGCTTTTCACTTTTCTTT	0.408													62	178					0	0	0.014410	0	0
RGPD4	285190	broad.mit.edu	37	2	108487252	108487252	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:108487252G>A	uc010ywk.1	+	20	2874	c.2792G>A	c.(2791-2793)GGA>GAA	p.G931E	RGPD4_uc002tdu.2_Missense_Mutation_p.G118E|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	931					intracellular transport		binding			skin(2)	2						TCGGAACCAGGAAATCAAGAA	0.408													82	164					0	0	0.014410	0	0
SLC5A7	60482	broad.mit.edu	37	2	108626859	108626859	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:108626859G>A	uc002tdv.2	+	9	1561	c.1285G>A	c.(1285-1287)GGA>AGA	p.G429R	SLC5A7_uc010ywm.1_Missense_Mutation_p.G182R|SLC5A7_uc010fjj.2_Missense_Mutation_p.G429R|SLC5A7_uc010ywn.1_Missense_Mutation_p.G316R	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	429	Extracellular (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	CTTTGTTAAGGGAACCAACAC	0.488													15	49					0	0	0.002450	0	0
ANAPC1	64682	broad.mit.edu	37	2	112592251	112592251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:112592251C>T	uc002thi.2	-	19	2561	c.2314G>A	c.(2314-2316)GAG>AAG	p.E772K		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	772					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						AACTTAAGCTCCTCATACACA	0.378													9	25					0	0	0.006214	0	0
MERTK	10461	broad.mit.edu	37	2	112702606	112702606	+	Silent	SNP	C	T	T	rs148690514	byFrequency	TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:112702606C>T	uc002thk.1	+	3	674	c.552C>T	c.(550-552)ATC>ATT	p.I184I	MERTK_uc002thl.1_Silent_p.I8I	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	184	Extracellular (Potential).|Ig-like C2-type 1.				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						ATGAAGAGATCGTGTCTGATC	0.398													8	20					0	0	0.004482	0	0
MERTK	10461	broad.mit.edu	37	2	112779006	112779006	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:112779006G>T	uc002thk.1	+	17	2319	c.2197G>T	c.(2197-2199)GAT>TAT	p.D733Y	MERTK_uc002thl.1_Missense_Mutation_p.D557Y	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	733	Protein kinase.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						TAGGTTGCGAGATGACATGAC	0.458													21	54					5.45024e-15	6.08797e-15	0.003330	1	0
CKAP2L	150468	broad.mit.edu	37	2	113514357	113514357	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:113514357C>T	uc002tie.2	-	4	670	c.591G>A	c.(589-591)AGG>AGA	p.R197R	CKAP2L_uc002tif.2_Intron|CKAP2L_uc010yxp.1_Silent_p.R32R|CKAP2L_uc010yxq.1_Silent_p.R32R	NM_152515	NP_689728	Q8IYA6	CKP2L_HUMAN	cytoskeleton associated protein 2-like	197						centrosome					0						GATCTGGCTTCCTCTCAGGTT	0.338													22	26					0	0	0.010504	0	0
IL1F10	84639	broad.mit.edu	37	2	113832373	113832373	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:113832373G>A	uc002tiu.2	+	4	267	c.192G>A	c.(190-192)GGG>GGA	p.G64G	IL1F10_uc002tiv.2_Silent_p.G64G|IL1F10_uc002tiw.2_Silent_p.G56G	NM_173161	NP_775184	Q8WWZ1	IL1FA_HUMAN	interleukin 1 family, member 10	64						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity			ovary(1)	1						TCCAGGGAGGGAGCCGCTGCC	0.587													15	48					0	0	0.003163	0	0
MARCO	8685	broad.mit.edu	37	2	119739049	119739049	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:119739049G>A	uc002tln.1	+	9	963	c.831G>A	c.(829-831)GGG>GGA	p.G277G	MARCO_uc010yyf.1_Silent_p.G199G	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	277	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						GAGCCCAGGGGAGTAAAGGTG	0.532													8	29					0	0	0.003080	0	0
FAM123C	205147	broad.mit.edu	37	2	131520963	131520963	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:131520963G>A	uc002trw.2	+	2	1508	c.1318G>A	c.(1318-1320)GAT>AAT	p.D440N	FAM123C_uc010fmv.2_Missense_Mutation_p.D440N|FAM123C_uc010fms.1_Missense_Mutation_p.D440N|FAM123C_uc010fmt.1_Missense_Mutation_p.D440N|FAM123C_uc010fmu.1_Missense_Mutation_p.D440N	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	440										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		CAGCCCAGATGATGACCTGTG	0.662													29	29					0	0	0.009535	0	0
NCKAP5	344148	broad.mit.edu	37	2	133540838	133540838	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:133540838G>A	uc002ttp.2	-	14	3920	c.3546C>T	c.(3544-3546)TCC>TCT	p.S1182S	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1182							protein binding				0						TCACAGCCACGGAACTTTTGG	0.488													19	30					0	0	0.007413	0	0
LCT	3938	broad.mit.edu	37	2	136564929	136564929	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:136564929G>A	uc002tuu.1	-	9	3953	c.3942C>T	c.(3940-3942)GTC>GTT	p.V1314V		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1314	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GAGACCAGGCGACATACCCTC	0.527													36	36					0	0	0.006230	0	0
THSD7B	80731	broad.mit.edu	37	2	137814229	137814229	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:137814229C>T	uc002tva.1	+	2	286	c.286C>T	c.(286-288)CGG>TGG	p.R96W	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_5'UTR	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AGTCAAGCCTCGGACTGCAGA	0.537													21	34					0	0	0.008871	0	0
THSD7B	80731	broad.mit.edu	37	2	137928475	137928475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:137928475C>T	uc002tva.1	+	6	1597	c.1597C>T	c.(1597-1599)CGT>TGT	p.R533C	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.R423C	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CCTGGGACATCGTATTCTGAA	0.502													8	18					0	0	0.004482	0	0
LRP1B	53353	broad.mit.edu	37	2	141777598	141777598	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:141777598C>T	uc002tvj.1	-	12	2835	c.1863G>A	c.(1861-1863)AGG>AGA	p.R621R	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	621	Extracellular (Potential).|LDL-receptor class B 6.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TAATGGTTTTCCTATGGCCAT	0.418										TSP Lung(27;0.18)			26	60					0	0	0.008361	0	0
ZEB2	9839	broad.mit.edu	37	2	145157783	145157783	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:145157783G>A	uc002tvu.2	-	8	1451	c.971C>T	c.(970-972)TCC>TTC	p.S324F	ZEB2_uc002tvv.2_Missense_Mutation_p.S318F|ZEB2_uc010zbm.1_Missense_Mutation_p.S295F|ZEB2_uc010fnp.2_Intron|ZEB2_uc010fnq.1_Missense_Mutation_p.S353F	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	324	C2H2-type 4; atypical.					cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		CGAACTGTAGGAACCAGAATG	0.373													9	22					0	0	0.008291	0	0
MBD5	55777	broad.mit.edu	37	2	149221446	149221446	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:149221446C>T	uc002twm.3	+	8	1343	c.355C>T	c.(355-357)CCA>TCA	p.P119S	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.P119S	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	119						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		CATGGAAGCCCCACATCCTTC	0.443													29	32					0	0	0.012213	0	0
NEB	4703	broad.mit.edu	37	2	152484039	152484039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:152484039C>T	uc010fnx.2	-	65	9603	c.9412G>A	c.(9412-9414)GAT>AAT	p.D3138N		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3138	Nebulin 85.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TTACTCACATCGCTCTGGAGG	0.473													41	120					0	0	0.009718	0	0
NEB	4703	broad.mit.edu	37	2	152529052	152529052	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:152529052G>A	uc010fnx.2	-	37	4321	c.4130C>T	c.(4129-4131)ACC>ATC	p.T1377I		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1377					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GCTGGTTTTGGTGTTCTCATA	0.483													29	65					0	0	0.006320	0	0
NEB	4703	broad.mit.edu	37	2	152534256	152534256	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:152534256C>T	uc010fnx.2	-	34	3788	c.3597G>A	c.(3595-3597)TGG>TGA	p.W1199*		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1199					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TGCCTTTCATCCAGTTGTTGT	0.458													71	175					0	0	0.014410	0	0
ACVR1C	130399	broad.mit.edu	37	2	158406693	158406693	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:158406693G>A	uc002tzk.3	-	4	999	c.756C>T	c.(754-756)TTC>TTT	p.F252F	ACVR1C_uc002tzl.3_Silent_p.F172F|ACVR1C_uc010fof.2_Intron|ACVR1C_uc010foe.2_Silent_p.F202F	NM_145259	NP_660302	Q8NER5	ACV1C_HUMAN	activin A receptor, type IC isoform 1	252	Protein kinase.|Cytoplasmic (Potential).				apoptosis|cell differentiation|regulation of apoptosis	activin receptor complex	activin receptor activity, type I|ATP binding|transforming growth factor beta receptor activity			lung(3)|ovary(2)|skin(2)	7						CAGCAGCAATGAAACCAAGGA	0.388													26	45					0	0	0.007291	0	0
LY75	4065	broad.mit.edu	37	2	160688295	160688295	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:160688295G>A	uc002ubc.3	-	28	3913	c.3844C>T	c.(3844-3846)CCA>TCA	p.P1282S	LY75_uc002ubb.3_Missense_Mutation_p.P1282S|LY75_uc010fos.2_Missense_Mutation_p.P1282S	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	1282	Extracellular (Potential).|C-type lectin 8.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		TGTGATTTTGGATCTGTTGAA	0.279													12	35					0	0	0.010729	0	0
PLA2R1	22925	broad.mit.edu	37	2	160901663	160901663	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:160901663C>A	uc002ube.1	-	2	322	c.115G>T	c.(115-117)GGA>TGA	p.G39*	PLA2R1_uc010zcp.1_Nonsense_Mutation_p.G39*|PLA2R1_uc002ubf.2_Nonsense_Mutation_p.G39*	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	39	Extracellular (Potential).|Ricin B-type lectin.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						ACAAATATTCCTTTATCTGAA	0.378													10	26					2.17888e-05	2.41551e-05	0.006214	1	0
GCG	2641	broad.mit.edu	37	2	163002103	163002103	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:163002103G>A	uc002ucc.2	-	4	438	c.339C>T	c.(337-339)GGC>GGT	p.G113G		NM_002054	NP_002045	P01275	GLUC_HUMAN	glucagon preproprotein	113					cell proliferation|cellular response to glucagon stimulus|energy reserve metabolic process|feeding behavior|regulation of insulin secretion	plasma membrane|soluble fraction	hormone activity				0					Exenatide(DB01276)|Phentolamine(DB00692)	TGGCAGCTTGGCCTTCCAAAT	0.418													120	75					0	0	0.014410	0	0
GAD1	2571	broad.mit.edu	37	2	171716242	171716242	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:171716242G>A	uc002ugi.2	+	17	2057	c.1635G>A	c.(1633-1635)CTG>CTA	p.L545L	GAD1_uc010fqc.2_Silent_p.L164L	NM_000817	NP_000808	Q99259	DCE1_HUMAN	glutamate decarboxylase 1 isoform GAD67	545					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion|protein-pyridoxal-5-phosphate linkage	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|plasma membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(1)	1					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	TCAAAGCCCTGATGATGGAGT	0.483													19	14					0	0	0.008871	0	0
TTN	7273	broad.mit.edu	37	2	179437594	179437594	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:179437594C>T	uc010zfg.1	-	275	65785	c.65561G>A	c.(65560-65562)AGA>AAA	p.R21854K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R15549K|TTN_uc010zfi.1_Missense_Mutation_p.R15482K|TTN_uc010zfj.1_Missense_Mutation_p.R15357K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22781							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGGCAGCATTCTGTCTTCAGC	0.483													23	23					0	0	0.002780	0	0
TTN	7273	broad.mit.edu	37	2	179569645	179569645	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:179569645C>T	uc010zfg.1	-	101	26145	c.25921G>A	c.(25921-25923)GAA>AAA	p.E8641K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E5302K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9568							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATACAAGTTCCTCAAATTCC	0.308													63	75					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179611959	179611959	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:179611959C>T	uc002unb.2	-	46	15392	c.15168G>A	c.(15166-15168)GGG>GGA	p.G5056G	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	1163							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTAGTGTCTCCCCTGGGGGTG	0.498													27	46					0	0	0.005443	0	0
TTN	7273	broad.mit.edu	37	2	179615421	179615421	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:179615421C>T	uc002unb.2	-	46	11930	c.11706G>A	c.(11704-11706)AAG>AAA	p.K3902K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCAAATCATCCTTTTTTATTC	0.328													26	23					0	0	0.003330	0	0
TTN	7273	broad.mit.edu	37	2	179647604	179647604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:179647604C>T	uc010zfg.1	-	18	3253	c.3029G>A	c.(3028-3030)AGC>AAC	p.S1010N	TTN_uc010zfh.1_Missense_Mutation_p.S964N|TTN_uc010zfi.1_Missense_Mutation_p.S964N|TTN_uc010zfj.1_Missense_Mutation_p.S964N|TTN_uc002unb.2_Missense_Mutation_p.S1010N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1010							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAATCGCCCGCTGTCTTCCGC	0.498													29	27					0	0	0.008361	0	0
CCDC141	285025	broad.mit.edu	37	2	179720119	179720119	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:179720119C>T	uc002unf.1	-	9	1347	c.1290G>A	c.(1288-1290)AAG>AAA	p.K430K		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	430							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			CCAAATTCTTCTTGTAATCTG	0.343													23	32					0	0	0.003954	0	0
ITGA4	3676	broad.mit.edu	37	2	182388248	182388248	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:182388248C>T	uc002unu.2	+	19	2921	c.2158C>T	c.(2158-2160)CAT>TAT	p.H720Y	ITGA4_uc010frj.1_Missense_Mutation_p.H202Y|ITGA4_uc002unv.2_5'UTR	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	720	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	ATATGTAGATCATCTCTCAAG	0.328													7	23					0	0	0.001984	0	0
ZNF804A	91752	broad.mit.edu	37	2	185463672	185463672	+	Translation_Start_Site	SNP	G	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:185463672G>T	uc002uph.2	+	1	580	c.-14G>T	c.(-16--12)GAGGC>GATGC			NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A							intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						cggcggaggaggcggcggctg	0.353													13	16					1.67942e-08	1.86582e-08	0.006122	1	0
ZNF804A	91752	broad.mit.edu	37	2	185801739	185801739	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:185801739G>A	uc002uph.2	+	4	2210	c.1616G>A	c.(1615-1617)GGA>GAA	p.G539E		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	539						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TGTGATTCTGGAAAAAATGAG	0.343													11	30					0	0	0.008291	0	0
ANKAR	150709	broad.mit.edu	37	2	190557052	190557052	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:190557052C>T	uc002uqw.1	+	3	898	c.898C>T	c.(898-900)CAC>TAC	p.H300Y	ANKAR_uc002uqu.2_RNA|ANKAR_uc002uqv.1_Missense_Mutation_p.H371Y	NM_144708	NP_653309	Q7Z5J8	ANKAR_HUMAN	ankyrin and armadillo repeat containing	371						integral to membrane	binding			ovary(2)|pancreas(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0256)|all cancers(119;0.0744)			CCAGAATTTTCACTACAAAGA	0.318													16	17					0	0	0.003163	0	0
DNAH7	56171	broad.mit.edu	37	2	196799425	196799425	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:196799425C>T	uc002utj.3	-	21	3462	c.3361G>A	c.(3361-3363)GAA>AAA	p.E1121K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1121	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ACCTCTCCTTCGCTGCTCTTC	0.403													55	42					0	0	0.014410	0	0
HECW2	57520	broad.mit.edu	37	2	197183308	197183308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:197183308C>T	uc002utm.1	-	9	2489	c.2306G>A	c.(2305-2307)GGG>GAG	p.G769E	HECW2_uc002utl.1_Missense_Mutation_p.G413E	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	769	Interaction with TP73.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						GGCAGTTGCCCCTTCACAGGT	0.622													27	27					0	0	0.008361	0	0
HECW2	57520	broad.mit.edu	37	2	197189781	197189781	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:197189781G>A	uc002utm.1	-	6	847	c.664C>T	c.(664-666)CCC>TCC	p.P222S	HECW2_uc002utl.1_5'UTR	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	222	C2.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						GCACAGGTGGGGAAACTGCTC	0.488													57	155					0	0	0.014410	0	0
PLCL1	5334	broad.mit.edu	37	2	198950711	198950711	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:198950711C>T	uc010fsp.2	+	2	2761	c.2470C>T	c.(2470-2472)CGG>TGG	p.R824W	PLCL1_uc002uuv.3_Missense_Mutation_p.R745W	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	824					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	GCCTGGATATCGGCATGTTCC	0.453													17	38					0	0	0.006122	0	0
CFLAR	8837	broad.mit.edu	37	2	202028672	202028672	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:202028672G>A	uc002uxb.3	+	10	1871	c.1419G>A	c.(1417-1419)AAG>AAA	p.K473K	CFLAR_uc002uxc.3_Silent_p.K438K|CFLAR_uc010zhl.1_Silent_p.K377K|CFLAR_uc002uxd.3_Silent_p.K473K|CFLAR_uc010fsy.2_RNA|CFLAR_uc010fsx.2_3'UTR|CFLAR_uc002uxg.2_Silent_p.K228K	NM_003879	NP_003870	O15519	CFLAR_HUMAN	CASP8 and FADD-like apoptosis regulator isoform	473	Interaction with caspase-8.|Interaction with TRAF1 and TRAF2.|Interaction with caspase-8 subunits p18 and p10.				anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|interspecies interaction between organisms|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteolysis		cysteine-type endopeptidase activity|protein binding				0						CTCTGAGAAAGAAACTTATCC	0.269													7	21					0	0	0.003080	0	0
PTH2R	5746	broad.mit.edu	37	2	209358274	209358274	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:209358274G>A	uc002vdb.2	+	13	1756	c.1543G>A	c.(1543-1545)GAA>AAA	p.E515K	PTH2R_uc010zjb.1_Missense_Mutation_p.E526K|PTH2R_uc010fuo.1_Intron	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	515	Cytoplasmic (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		GGAGACCAAGGAAGATAGTGG	0.522													26	26					0	0	0.004656	0	0
ERBB4	2066	broad.mit.edu	37	2	212652844	212652844	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:212652844G>A	uc002veg.1	-	4	560	c.462C>T	c.(460-462)TTC>TTT	p.F154F	ERBB4_uc002veh.1_Silent_p.F154F|ERBB4_uc010zji.1_Silent_p.F154F|ERBB4_uc010zjj.1_Silent_p.F154F|ERBB4_uc010fut.1_Silent_p.F154F	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	154	Extracellular (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		CATAACAAAGGAATTTGTTCT	0.353										TSP Lung(8;0.080)			19	15					0	0	0.006122	0	0
TMEM169	92691	broad.mit.edu	37	2	216964891	216964891	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:216964891C>T	uc010zjr.1	+	4	846	c.520C>T	c.(520-522)CTT>TTT	p.L174F	TMEM169_uc010zjs.1_Missense_Mutation_p.L174F|TMEM169_uc002vfw.2_Missense_Mutation_p.L174F|TMEM169_uc002vfv.3_Missense_Mutation_p.L174F	NM_001142310	NP_001135782	Q96HH4	TM169_HUMAN	transmembrane protein 169	174	Helical; (Potential).					integral to membrane				ovary(1)	1		Renal(323;0.0651)		Epithelial(149;6.44e-06)|all cancers(144;0.000398)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGTTTTCATCCTTTCTTTTGT	0.512													51	62					0	0	0.014410	0	0
SPEG	10290	broad.mit.edu	37	2	220354408	220354408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:220354408G>A	uc010fwg.2	+	36	8668	c.8668G>A	c.(8668-8670)GGG>AGG	p.G2890R		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2890	Pro-rich.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CACTCCTCAAGGGGTTAAACC	0.617													50	126					0	0	0.014410	0	0
EPHA4	2043	broad.mit.edu	37	2	222347196	222347196	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:222347196G>A	uc002vmq.2	-	5	1236	c.1194C>T	c.(1192-1194)GTC>GTT	p.V398V	EPHA4_uc002vmr.2_Silent_p.V398V|EPHA4_uc010zlm.1_Silent_p.V339V|EPHA4_uc010zln.1_Silent_p.V398V	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	398	Extracellular (Potential).|Fibronectin type-III 1.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		CAGTGATGGAGACTTTGGTGG	0.498													152	145					0	0	0.014410	0	0
DIS3L2	129563	broad.mit.edu	37	2	233201319	233201320	+	Nonsense_Mutation	DNP	CG	TT	TT			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:233201319_233201320CG>TT	uc010fxz.2	+	21	2913_2914	c.2637_2638CG>TT	c.(2635-2640)CCCGAG>CCTTAG	p.E880*	DIS3L2_uc002vsm.3_RNA|DIS3L2_uc002vso.2_RNA|DIS3L2_uc002vsp.1_RNA	NM_152383	NP_689596	Q8IYB7	DI3L2_HUMAN	DIS3 mitotic control homolog (S.	880							exonuclease activity|ribonuclease activity|RNA binding			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(139;0.00809)|Renal(207;0.0113)|Acute lymphoblastic leukemia(138;0.0195)|all_lung(227;0.0465)|Lung NSC(271;0.136)		Epithelial(121;1.6e-13)|BRCA - Breast invasive adenocarcinoma(100;0.00104)|LUSC - Lung squamous cell carcinoma(224;0.0109)|Lung(119;0.0149)		ACGGTGAGCCCGAGGACTCAAG	0.559													10	9					0	0	0.004672	0	0
INPP5D	3635	broad.mit.edu	37	2	234106901	234106901	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:234106901C>T	uc010zmo.1	+	24	3007	c.2854C>T	c.(2854-2856)CCG>TCG	p.P952S	INPP5D_uc010zmp.1_Missense_Mutation_p.P951S	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	952	Pro-rich.				apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		CAAGGACTCCCCGCTGGGGCC	0.652													28	17					0	0	0.008361	0	0
COL6A3	1293	broad.mit.edu	37	2	238243405	238243405	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:238243405G>A	uc002vwl.2	-	41	9378	c.9093C>T	c.(9091-9093)TCC>TCT	p.S3031S	COL6A3_uc002vwo.2_Silent_p.S2825S|COL6A3_uc010znj.1_Silent_p.S2424S|COL6A3_uc002vwj.2_Silent_p.S412S	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	3031	Fibronectin type-III.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TCAGAACCAGGGACTGATCAT	0.572													20	34					0	0	0.012319	0	0
COL6A3	1293	broad.mit.edu	37	2	238267874	238267874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:238267874C>T	uc002vwl.2	-	19	6614	c.6329G>A	c.(6328-6330)GGA>GAA	p.G2110E	COL6A3_uc002vwo.2_Missense_Mutation_p.G1904E|COL6A3_uc010znj.1_Missense_Mutation_p.G1503E	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2110	Triple-helical region.|Collagen-like 2.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		ACCATCCAGTCCAATTTCTCC	0.408													39	29					0	0	0.005524	0	0
AGXT	189	broad.mit.edu	37	2	241808382	241808383	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:241808382_241808383CC>TT	uc002waa.3	+	1	221_222	c.100_101CC>TT	c.(100-102)CCT>TTT	p.P34F	AGXT_uc010zoi.1_Missense_Mutation_p.P34F	NM_000030	NP_000021	P21549	SPYA_HUMAN	alanine-glyoxylate aminotransferase	34					glyoxylate metabolic process|protein targeting to peroxisome	mitochondrial matrix|peroxisomal matrix	alanine-glyoxylate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|serine-pyruvate transaminase activity				0		all_epithelial(40;1.61e-15)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)	Glycine(DB00145)|L-Alanine(DB00160)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	TTCCAACCTGCCTCCTCGCATC	0.649													20	40					0	0	0.004672	0	0
AGXT	189	broad.mit.edu	37	2	241808385	241808385	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:241808385C>T	uc002waa.3	+	1	224	c.103C>T	c.(103-105)CCT>TCT	p.P35S	AGXT_uc010zoi.1_Missense_Mutation_p.P35S	NM_000030	NP_000021	P21549	SPYA_HUMAN	alanine-glyoxylate aminotransferase	35					glyoxylate metabolic process|protein targeting to peroxisome	mitochondrial matrix|peroxisomal matrix	alanine-glyoxylate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|serine-pyruvate transaminase activity				0		all_epithelial(40;1.61e-15)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)	Glycine(DB00145)|L-Alanine(DB00160)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	CAACCTGCCTCCTCGCATCAT	0.657													22	40					0	0	0.007291	0	0
C20orf194	25943	broad.mit.edu	37	20	3277506	3277506	+	Splice_Site	SNP	A	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:3277506A>T	uc002wii.2	-	23	2069	c.2018_splice	c.e23+1	p.L673_splice	C20orf194_uc002wij.3_Splice_Site_p.L412_splice|C20orf194_uc002wik.2_Splice_Site_p.L347_splice	NM_001009984	NP_001009984	Q5TEA3	CT194_HUMAN	hypothetical protein LOC25943												0						GCAGCCACTTACAATCTCTTT	0.453													51	195					0	0	0.014410	0	0
CDS2	8760	broad.mit.edu	37	20	5170841	5170841	+	Silent	SNP	C	T	T	rs138757559	byFrequency	TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:5170841C>T	uc002wls.2	+	13	1556	c.1299C>T	c.(1297-1299)ATC>ATT	p.I433I	CDS2_uc010zqt.1_RNA|CDS2_uc002wlu.2_3'UTR|CDS2_uc010zqu.1_Silent_p.I313I|CDS2_uc002wlv.2_Silent_p.I335I|CDS2_uc010zqv.1_Silent_p.I203I	NM_003818	NP_003809	O95674	CDS2_HUMAN	phosphatidate cytidylyltransferase 2	433					phospholipid biosynthetic process	integral to membrane|mitochondrial inner membrane	phosphatidate cytidylyltransferase activity				0						CTCATCTGATCGACAAAGGGA	0.562													19	16					0	0	0.008871	0	0
PROKR2	128674	broad.mit.edu	37	20	5283198	5283198	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:5283198C>T	uc010zqw.1	-	2	643	c.643G>A	c.(643-645)GAT>AAT	p.D215N	PROKR2_uc010zqx.1_Missense_Mutation_p.D215N|PROKR2_uc010zqy.1_Missense_Mutation_p.D215N	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	215	Extracellular (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						AGCTGCTGATCCACAGGCCAG	0.517										HNSCC(71;0.22)			41	53					0	0	0.006230	0	0
PLCB4	5332	broad.mit.edu	37	20	9449315	9449315	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:9449315G>A	uc002wnf.2	+	34	3446	c.3310G>A	c.(3310-3312)GAA>AAA	p.E1104K	PLCB4_uc010gbx.2_Missense_Mutation_p.E1116K|PLCB4_uc002wne.2_Missense_Mutation_p.E1104K|PLCB4_uc002wnh.2_Missense_Mutation_p.E951K	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	1104					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AGCAGAACGGGAAAGGTAAGT	0.418													32	40					0	0	0.009535	0	0
ANKRD5	63926	broad.mit.edu	37	20	10030446	10030446	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:10030446C>T	uc002wno.2	+	7	1622	c.1229C>T	c.(1228-1230)TCG>TTG	p.S410L	uc002wnn.1_Intron|ANKRD5_uc002wnp.2_Missense_Mutation_p.S410L|ANKRD5_uc010gbz.2_Missense_Mutation_p.S221L	NM_022096	NP_071379	Q9NU02	ANKR5_HUMAN	ankyrin repeat domain protein 5	410							calcium ion binding			ovary(1)|breast(1)	2						GTCTTAGGATCGTATGGACCT	0.408													34	58					0	0	0.003755	0	0
CRNKL1	51340	broad.mit.edu	37	20	20024146	20024146	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:20024146T>C	uc002wrs.2	-	8	1477	c.1445A>G	c.(1444-1446)GAA>GGA	p.E482G		NM_016652	NP_057736	Q9BZJ0	CRNL1_HUMAN	crooked neck-like 1 protein	482	HAT 8.				spliceosome assembly	catalytic step 2 spliceosome|cytoplasm|nuclear speck	RNA binding			ovary(2)|large_intestine(1)	3						CTTCACTTCTTCTTCGTACTG	0.398													58	77					0	0	0.014410	0	0
DEFB116	245930	broad.mit.edu	37	20	29891167	29891167	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:29891167C>T	uc010ztm.1	-	2	157	c.157G>A	c.(157-159)GAA>AAA	p.E53K		NM_001037731	NP_001032820	Q30KQ4	DB116_HUMAN	beta-defensin 116 precursor	53					defense response to bacterium	extracellular region					0	all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			ATTTCATATTCTCTGCAGGCG	0.448													60	186					0	0	0.014410	0	0
POFUT1	23509	broad.mit.edu	37	20	30804475	30804475	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:30804475T>A	uc002wxp.2	+	4	542	c.493T>A	c.(493-495)TTT>ATT	p.F165I	POFUT1_uc002wxo.2_Missense_Mutation_p.F165I|POFUT1_uc010ztt.1_Missense_Mutation_p.F57I|POFUT1_uc010ztu.1_Intron	NM_015352	NP_056167	Q9H488	OFUT1_HUMAN	protein O-fucosyltransferase 1 isoform 1	165					fucose metabolic process|Notch signaling pathway|O-glycan processing|regulation of transcription, DNA-dependent	endoplasmic reticulum|membrane	peptide-O-fucosyltransferase activity			breast(1)	1			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			GTCGGAGCTTTTTACAGGCAT	0.512													55	70					0	0	0.014410	0	0
NCOA6	23054	broad.mit.edu	37	20	33334674	33334674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:33334674C>T	uc002xav.2	-	11	5422	c.2851G>A	c.(2851-2853)GAA>AAA	p.E951K	NCOA6_uc002xaw.2_Missense_Mutation_p.E951K	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	951	NCOA1-binding region.|Gln-rich.|CREBBP-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						ATTCCTTGTTCTCCAGGCAAC	0.388													31	43					0	0	0.004289	0	0
MYH7B	57644	broad.mit.edu	37	20	33581950	33581950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:33581950G>A	uc002xbi.1	+	25	2664	c.2572G>A	c.(2572-2574)GAT>AAT	p.D858N		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	816	IQ.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			CCTCCCTAGGGATGCGCTGTT	0.552													71	78					0	0	0.014410	0	0
DLGAP4	22839	broad.mit.edu	37	20	35060252	35060252	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:35060252C>T	uc002xff.2	+	3	567	c.132C>T	c.(130-132)GCC>GCT	p.A44A	DLGAP4_uc010zvp.1_Silent_p.A44A	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	44					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				CCCGCGAGGCCCGCTTCCCCG	0.672													20	32					0	0	0.012319	0	0
SAMHD1	25939	broad.mit.edu	37	20	35575208	35575208	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:35575208C>T	uc002xgh.1	-	2	339	c.209_splice	c.e2-1	p.E70_splice		NM_015474	NP_056289	Q9Y3Z3	SAMH1_HUMAN	SAM domain- and HD domain-containing protein 1						defense response to virus|innate immune response|regulation of innate immune response	nucleus	metal ion binding|phosphoric diester hydrolase activity				0		Myeloproliferative disorder(115;0.00878)				ATTTCATTTTCTATGGAAGAA	0.328													9	11					0	0	0.008291	0	0
FAM83D	81610	broad.mit.edu	37	20	37580266	37580266	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:37580266C>T	uc002xjg.2	+	4	992	c.951C>T	c.(949-951)TTC>TTT	p.F317F		NM_030919	NP_112181	Q9H4H8	FA83D_HUMAN	hypothetical protein LOC81610	287					cell division|mitosis	cytoplasm|spindle pole				ovary(3)	3		Myeloproliferative disorder(115;0.00878)				ATCTGGAGTTCCGAATCCTGT	0.448													24	55					0	0	0.002780	0	0
PTPRT	11122	broad.mit.edu	37	20	40714436	40714436	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:40714436C>T	uc002xkg.2	-	28	4088	c.3904G>A	c.(3904-3906)GAG>AAG	p.E1302K	PTPRT_uc010ggj.2_Missense_Mutation_p.E1321K|PTPRT_uc010ggi.2_Missense_Mutation_p.E505K	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1302	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GAGACGAACTCCACCTGGATG	0.552													47	57					0	0	0.014410	0	0
PTPRT	11122	broad.mit.edu	37	20	41306689	41306689	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:41306689C>T	uc002xkg.2	-	7	1154	c.970G>A	c.(970-972)GAA>AAA	p.E324K	PTPRT_uc010ggj.2_Missense_Mutation_p.E324K	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	324	Extracellular (Potential).|Fibronectin type-III 1.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TATTCCACTTCCTTCAGGATG	0.567													19	87					0	0	0.010504	0	0
ADA	100	broad.mit.edu	37	20	43251473	43251473	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:43251473G>A	uc002xmj.2	-	8	905	c.777C>T	c.(775-777)TTC>TTT	p.F259F	ADA_uc010ggt.2_RNA	NM_000022	NP_000013	P00813	ADA_HUMAN	adenosine deaminase	259					adenosine catabolic process|cell adhesion|hypoxanthine salvage|inosine biosynthetic process|negative regulation of adenosine receptor signaling pathway|purine nucleotide salvage|purine ribonucleoside monophosphate biosynthetic process|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation	cell junction|cytoplasmic membrane-bounded vesicle lumen|cytosol|external side of plasma membrane|lysosome	adenosine deaminase activity|protein binding|zinc ion binding			pancreas(2)|ovary(1)	3		all_lung(126;1.24e-07)|Lung NSC(126;1.94e-07)|Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)		Adenosine(DB00640)|Cladribine(DB00242)|Dipyridamole(DB00975)|Erythromycin(DB00199)|Fludarabine(DB01073)|Idoxuridine(DB00249)|Nelarabine(DB01280)|Pentostatin(DB00552)|Theophylline(DB00277)|Vidarabine(DB00194)	CGCTTACCTCGAAGTGCATGT	0.602									Adenosine_Deaminase_Deficiency				72	99					0	0	0.014410	0	0
SEMG1	6406	broad.mit.edu	37	20	43836379	43836379	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:43836379G>A	uc002xni.2	+	2	498	c.441G>A	c.(439-441)GGG>GGA	p.G147G	SEMG1_uc002xnj.2_Silent_p.G147G|SEMG2_uc010ggz.2_Intron|SEMG1_uc002xnh.2_Silent_p.G147G	NM_003007	NP_002998	P04279	SEMG1_HUMAN	semenogelin I preproprotein	147					insemination|sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(2)	2		Myeloproliferative disorder(115;0.0122)				AAGATCAGGGGAATAGCCCAT	0.423													17	39					0	0	0.004990	0	0
TNNC2	7125	broad.mit.edu	37	20	44453199	44453199	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:44453199C>G	uc002xpr.2	-	3	200	c.134G>C	c.(133-135)AGG>ACG	p.R45T		NM_003279	NP_003270	P02585	TNNC2_HUMAN	fast skeletal muscle troponin C	45	EF-hand 1.				muscle filament sliding|regulation of muscle contraction|skeletal muscle contraction	cytosol|troponin complex	calcium ion binding			upper_aerodigestive_tract(1)	1		Myeloproliferative disorder(115;0.0122)				GCCCAGCATCCTCATCACCGT	0.617													29	41					0	0	0.009535	0	0
PREX1	57580	broad.mit.edu	37	20	47258999	47258999	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:47258999G>A	uc002xtw.1	-	28	3653	c.3630C>T	c.(3628-3630)ATC>ATT	p.I1210I	PREX1_uc002xtv.1_Silent_p.I507I	NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	1210					actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			TGTCAGATGGGATCCGCATGT	0.567													20	35					0	0	0.003330	0	0
CSE1L	1434	broad.mit.edu	37	20	47707330	47707330	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:47707330C>T	uc002xty.2	+	20	2367	c.2233C>T	c.(2233-2235)CAC>TAC	p.H745Y	CSE1L_uc010zyg.1_Missense_Mutation_p.H528Y|CSE1L_uc010ghx.2_Missense_Mutation_p.H689Y|CSE1L_uc010ghy.2_Missense_Mutation_p.H366Y|CSE1L_uc010zyh.1_Missense_Mutation_p.H394Y	NM_001316	NP_001307	P55060	XPO2_HUMAN	CSE1 chromosome segregation 1-like protein	745					apoptosis|cell proliferation|intracellular protein transport	cytoplasm|nucleus	importin-alpha export receptor activity			large_intestine(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000491)|Colorectal(8;0.198)			AGCAAATGACCACCAAGGTTT	0.363													37	58					0	0	0.004878	0	0
KCNB1	3745	broad.mit.edu	37	20	47990024	47990024	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:47990024G>A	uc002xur.1	-	2	2237	c.2073C>T	c.(2071-2073)TAC>TAT	p.Y691Y	KCNB1_uc002xus.1_Silent_p.Y691Y	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	691	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GAGGGTCATGGTACATCCCTA	0.562													22	36					0	0	0.002780	0	0
DOK5	55816	broad.mit.edu	37	20	53208205	53208205	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:53208205G>A	uc002xwy.2	+	5	680	c.460G>A	c.(460-462)GAA>AAA	p.E154K	DOK5_uc010gin.2_Missense_Mutation_p.E46K|DOK5_uc002xwz.2_Intron	NM_018431	NP_060901	Q9P104	DOK5_HUMAN	docking protein 5	154	IRS-type PTB.						insulin receptor binding			ovary(1)	1			Colorectal(105;0.202)			TGTACATGGCGAATGTGCCTT	0.438													51	71					0	0	0.014410	0	0
PCK1	5105	broad.mit.edu	37	20	56140810	56140810	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:56140810G>A	uc002xyn.3	+	10	1982	c.1819G>A	c.(1819-1821)GAA>AAA	p.E607K	PCK1_uc010zzm.1_Missense_Mutation_p.E290K	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	607					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			CCTCCCCTGTGAAATCGAGAG	0.458													22	21					0	0	0.003330	0	0
ZBP1	81030	broad.mit.edu	37	20	56186787	56186787	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:56186787G>A	uc002xyo.2	-	6	1151	c.870C>T	c.(868-870)CCC>CCT	p.P290P	ZBP1_uc010gjm.2_Silent_p.P289P|ZBP1_uc002xyp.2_Silent_p.P215P	NM_030776	NP_110403	Q9H171	ZBP1_HUMAN	Z-DNA binding protein 1 isoform a	290						cytoplasm|nucleus	double-stranded RNA adenosine deaminase activity|left-handed Z-DNA binding|RNA binding			ovary(2)	2	Lung NSC(12;0.000545)|all_lung(29;0.00195)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;7.87e-13)|Epithelial(14;3.26e-09)|all cancers(14;3.62e-08)			AGTTACCTGGGGGGCTGCCAG	0.612													21	16					0	0	0.002780	0	0
LAMA5	3911	broad.mit.edu	37	20	60921188	60921188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:60921188C>T	uc002ycq.2	-	10	1433	c.1366G>A	c.(1366-1368)GAG>AAG	p.E456K		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	456	Laminin EGF-like 3.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCACACCGCTCCCCAGAGAAG	0.647													7	34					0	0	0.001984	0	0
CHRNA4	1137	broad.mit.edu	37	20	61990991	61990991	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:61990991G>A	uc002yes.2	-	2	315	c.137C>T	c.(136-138)TCC>TTC	p.S46F	CHRNA4_uc002yet.1_Intron|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_5'UTR|CHRNA4_uc002yev.1_5'UTR|CHRNA4_uc010gkf.1_5'UTR	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	46	Extracellular (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	GTTGTAACCGGAGAAGAGTTT	0.652													23	33					0	0	0.008361	0	0
OPRL1	4987	broad.mit.edu	37	20	62724272	62724272	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:62724272C>T	uc002yic.2	+	3	601	c.199C>T	c.(199-201)CTG>TTG	p.L67L	OPRL1_uc002yid.2_Silent_p.L67L|OPRL1_uc002yif.3_Silent_p.L67L	NM_182647	NP_872588	P41146	OPRX_HUMAN	opiate receptor-like 1	67	Helical; Name=1; (Potential).				elevation of cytosolic calcium ion concentration|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception	integral to plasma membrane	protein binding|X-opioid receptor activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;4.74e-11)|all_epithelial(29;1.33e-12)|Lung NSC(23;3.27e-09)|all_lung(23;1.02e-08)					CGGAGGGCTCCTGGGGAACTG	0.642													27	39					0	0	0.006320	0	0
BAGE2	85319	broad.mit.edu	37	21	11049620	11049620	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr21:11049620C>T	uc002yit.1	-	4	489	c.281G>A	c.(280-282)CGA>CAA	p.R94Q		NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CATCTTCCTTCGCTATAATTA	0.373													14	114					0	0	0.006122	0	0
KRTAP19-4	337971	broad.mit.edu	37	21	31869219	31869219	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr21:31869219C>T	uc011acz.1	-	1	210	c.210G>A	c.(208-210)ACG>ACA	p.T70T		NM_181610	NP_853641	Q3LI73	KR194_HUMAN	keratin associated protein 19-4	70						intermediate filament				ovary(2)	2						CCTCTGATATCGTGTCCTCAG	0.408													69	22					0	0	0.014410	0	0
PRDM15	63977	broad.mit.edu	37	21	43243672	43243672	+	Splice_Site	SNP	A	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr21:43243672A>G	uc002yzq.1	-	21	2970	c.2859_splice	c.e21+1	p.K953_splice	PRDM15_uc002yzo.2_Splice_Site_p.K624_splice|PRDM15_uc002yzp.2_Splice_Site_p.K644_splice|PRDM15_uc002yzr.1_Splice_Site_p.K644_splice	NM_022115	NP_071398	P57071	PRD15_HUMAN	PR domain containing 15 isoform 1						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CGCGATCGACACCTTGAAGTG	0.493													3	1					0	0	0.004672	0	0
UBASH3A	53347	broad.mit.edu	37	21	43863433	43863433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr21:43863433C>T	uc002zbe.2	+	13	1679	c.1643C>T	c.(1642-1644)CCC>CTC	p.P548L	UBASH3A_uc002zbf.2_Missense_Mutation_p.P510L|UBASH3A_uc010gpc.2_RNA|UBASH3A_uc010gpd.2_RNA|UBASH3A_uc010gpe.2_Intron	NM_018961	NP_061834	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing,	548	Phosphatase-like.					cytosol|nucleus				ovary(3)	3						CCCGCGTTTCCCCTGTCCGCC	0.592													6	3					0	0	0.001984	0	0
PRMT2	3275	broad.mit.edu	37	21	48064319	48064320	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr21:48064319_48064320CC>TT	uc002zjx.2	+	5	560_561	c.246_247CC>TT	c.(244-249)AACCAT>AATTAT	p.H83Y	PRMT2_uc002zjw.2_Missense_Mutation_p.H83Y|PRMT2_uc002zjy.2_Missense_Mutation_p.H83Y|PRMT2_uc010gqm.2_Missense_Mutation_p.H83Y|PRMT2_uc011aga.1_Missense_Mutation_p.H83Y|PRMT2_uc011agb.1_Missense_Mutation_p.H83Y|PRMT2_uc011agc.1_Missense_Mutation_p.H83Y|PRMT2_uc002zjz.1_5'UTR	NM_206962	NP_996845	P55345	ANM2_HUMAN	HMT1 hnRNP methyltransferase-like 1	83	Interaction with RB1 (By similarity).|SH3.				developmental cell growth|induction of apoptosis|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of NF-kappaB transcription factor activity|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of androgen receptor signaling pathway	cytosol|nucleus	androgen receptor binding|estrogen receptor binding|histone-arginine N-methyltransferase activity|peroxisome proliferator activated receptor binding|progesterone receptor binding|protein homodimerization activity|retinoic acid receptor binding|signal transducer activity|thyroid hormone receptor binding|transcription coactivator activity			ovary(1)	1	Breast(49;0.247)	Lung NSC(3;0.245)		Epithelial(3;1.03e-07)|OV - Ovarian serous cystadenocarcinoma(3;4.68e-07)|all cancers(3;7.48e-07)|Colorectal(79;0.167)|Lung(125;0.203)|LUSC - Lung squamous cell carcinoma(216;0.23)|READ - Rectum adenocarcinoma(84;0.248)		TTCCGGCAAACCATGTGGGGAA	0.51													56	21					0	0	0.004672	0	0
CCT8L2	150160	broad.mit.edu	37	22	17072798	17072798	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr22:17072798C>T	uc002zlp.1	-	1	903	c.643G>A	c.(643-645)GAT>AAT	p.D215N		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	215					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				AGGCAGGAATCCTCCAGTGTC	0.612													15	86					0	0	0.004990	0	0
TRMT2A	27037	broad.mit.edu	37	22	20102127	20102127	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr22:20102127G>A	uc002zrk.1	-	8	1418	c.1203C>T	c.(1201-1203)ACC>ACT	p.T401T	TRMT2A_uc002zrl.1_Silent_p.T401T|TRMT2A_uc002zrm.1_Silent_p.T223T|TRMT2A_uc002zrn.1_Silent_p.T401T|RANBP1_uc011ahl.1_5'Flank|RANBP1_uc002zro.1_5'Flank|RANBP1_uc002zrp.2_5'Flank	NM_182984	NP_892029	Q8IZ69	TRM2A_HUMAN	HpaII tiny fragments locus 9C	401					RNA processing		nucleotide binding|RNA binding|RNA methyltransferase activity			breast(1)	1						AGATCCGGAAGGTCAGCCCTA	0.632													49	100					0	0	0.014410	0	0
PI4KA	5297	broad.mit.edu	37	22	21073016	21073016	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr22:21073016G>A	uc002zsz.3	-	44	5268	c.5037C>T	c.(5035-5037)TTC>TTT	p.F1679F	PI4KA_uc010gsp.2_Silent_p.F72F|PI4KA_uc002zsy.3_Silent_p.F489F	NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	1679	Pleckstrin homology (PH) domain conferring phosphoinositide binding specificity (By similarity).				phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			TCTTGTTAAAGAAATCAAACT	0.473													38	53					0	0	0.006230	0	0
LOC96610	96610	broad.mit.edu	37	22	22550605	22550605	+	RNA	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr22:22550605C>T	uc011aim.1	+	11		c.1099C>T								Parts of antibodies, mostly variable regions.												0						ACTCTGCCTCCCTCACCATCT	0.542													27	29					0	0	0.006320	0	0
PRAME	23532	broad.mit.edu	37	22	22892525	22892525	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr22:22892525G>A	uc002zwf.2	-	4	732	c.576C>T	c.(574-576)TTC>TTT	p.F192F	LOC96610_uc011aim.1_Intron|PRAME_uc011air.1_Silent_p.F176F|PRAME_uc010gtr.2_Silent_p.F192F|PRAME_uc002zwg.2_Silent_p.F192F|PRAME_uc002zwh.2_Silent_p.F192F|PRAME_uc002zwi.2_Silent_p.F192F|PRAME_uc002zwj.2_Silent_p.F192F|PRAME_uc002zwk.2_Silent_p.F192F	NM_206956	NP_996839	P78395	PRAME_HUMAN	preferentially expressed antigen in melanoma	192					apoptosis|cell differentiation|negative regulation of apoptosis|negative regulation of cell differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|regulation of growth|transcription, DNA-dependent	nucleus|plasma membrane	retinoic acid receptor binding			central_nervous_system(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)|all_lung(157;4.03e-05)		READ - Rectum adenocarcinoma(21;0.0649)		TGAGGTAGGAGAACAATTCAT	0.453													37	58					0	0	0.008740	0	0
IGLL1	3543	broad.mit.edu	37	22	23917246	23917246	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr22:23917246C>T	uc002zxd.2	-	2	348	c.230G>A	c.(229-231)TGG>TAG	p.W77*	IGLL1_uc002zxe.2_Intron	NM_020070	NP_064455	P15814	IGLL1_HUMAN	immunoglobulin lambda-like polypeptide 1 isoform	77					immune response	extracellular region|membrane					0						GGGGCCAGTCCAGGAGCCGCG	0.632													9	59					0	0	0.010729	0	0
RGL4	266747	broad.mit.edu	37	22	24036575	24036575	+	Missense_Mutation	SNP	C	G	G	rs143837743	byFrequency	TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr22:24036575C>G	uc002zxn.2	+	5	2124	c.954C>G	c.(952-954)ATC>ATG	p.I318M	LOC91316_uc002zxh.3_5'Flank|LOC91316_uc002zxi.3_5'Flank|LOC91316_uc002zxk.3_RNA|LOC91316_uc010gua.2_Intron|LOC91316_uc002zxl.3_Intron|LOC91316_uc011aiz.1_RNA|LOC91316_uc002zxm.3_RNA|RGL4_uc002zxo.2_Missense_Mutation_p.I318M|RGL4_uc002zxp.1_Missense_Mutation_p.I182M|RGL4_uc002zxq.2_Missense_Mutation_p.I182M	NM_153615	NP_705843	Q8IZJ4	RGDSR_HUMAN	ral guanine nucleotide dissociation	318	Ras-GEF.				small GTPase mediated signal transduction	cytoplasmic membrane-bounded vesicle	guanyl-nucleotide exchange factor activity			ovary(1)	1						TGCACGTCATCGTCTCTGCTC	0.572													8	42					0	0	0.003080	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659591	24659591	+	RNA	SNP	A	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr22:24659591A>G	uc002zzs.3	+	7		c.3323A>G			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						ACTCACTGACATCGAAGGCTG	0.632													3	13					0	0	0.004672	0	0
CRYBB2	1415	broad.mit.edu	37	22	25623851	25623851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr22:25623851G>A	uc003abp.1	+	4	253	c.205G>A	c.(205-207)GGC>AGC	p.G69S		NM_000496	NP_000487	P43320	CRBB2_HUMAN	crystallin, beta B2	69	Beta/gamma crystallin 'Greek key' 2.				response to stimulus|visual perception		structural constituent of eye lens				0						CAACTGCAAGGGCGAGCAGTT	0.587													53	93					0	0	0.014410	0	0
MYO18B	84700	broad.mit.edu	37	22	26219584	26219584	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr22:26219584C>T	uc003abz.1	+	13	2884	c.2634C>T	c.(2632-2634)ATC>ATT	p.I878I	MYO18B_uc003aca.1_Silent_p.I759I|MYO18B_uc010guy.1_Silent_p.I759I|MYO18B_uc010guz.1_Silent_p.I759I|MYO18B_uc011aka.1_Silent_p.I32I|MYO18B_uc011akb.1_Silent_p.I391I	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	878	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						TTCGACAGATCATCCAGCAAA	0.587													92	138					0	0	0.014410	0	0
MYO18B	84700	broad.mit.edu	37	22	26422964	26422964	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr22:26422964G>A	uc003abz.1	+	43	7274	c.7024G>A	c.(7024-7026)GAA>AAA	p.E2342K	MYO18B_uc003aca.1_Missense_Mutation_p.E2223K|MYO18B_uc010guy.1_Missense_Mutation_p.E2224K|MYO18B_uc010guz.1_Missense_Mutation_p.E2222K|MYO18B_uc011aka.1_Missense_Mutation_p.E1496K|MYO18B_uc011akb.1_Missense_Mutation_p.E1855K|MYO18B_uc010gva.1_Missense_Mutation_p.E325K|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2342						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CCTACTCCCCGAAAAGTCGAA	0.562													47	57					0	0	0.014410	0	0
PLA2G3	50487	broad.mit.edu	37	22	31532705	31532705	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr22:31532705T>G	uc003aka.2	-	6	1409	c.1280A>C	c.(1279-1281)AAG>ACG	p.K427T		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	427					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						AGGGGCCAGCTTGAAGCAGGT	0.577													84	106					0	0	0.014410	0	0
LIMK2	3985	broad.mit.edu	37	22	31663806	31663806	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr22:31663806C>T	uc003akh.2	+	10	1318	c.1173C>T	c.(1171-1173)TTC>TTT	p.F391F	LIMK2_uc003akg.2_Silent_p.F308F|LIMK2_uc003aki.2_Silent_p.F145F|LIMK2_uc003akj.2_Silent_p.F370F|LIMK2_uc003akk.2_Silent_p.F370F|LIMK2_uc011aln.1_Silent_p.F308F	NM_005569	NP_005560	P53671	LIMK2_HUMAN	LIM domain kinase 2 isoform 2a	391	Protein kinase.					mitochondrion|nucleus	ATP binding|protein serine/threonine kinase activity|zinc ion binding			ovary(2)	2						TGCTCAAGTTCATTGGTGTGC	0.527													39	47					0	0	0.006230	0	0
TOM1	10043	broad.mit.edu	37	22	35729441	35729442	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr22:35729441_35729442CC>TT	uc003ann.2	+	10	1103_1104	c.978_979CC>TT	c.(976-981)GGCCCT>GGTTCT	p.P327S	TOM1_uc011ami.1_Missense_Mutation_p.P294S|TOM1_uc011amj.1_Missense_Mutation_p.P170S|TOM1_uc003ans.2_Missense_Mutation_p.P170S|TOM1_uc011amk.1_Missense_Mutation_p.P289S|TOM1_uc003anp.2_Missense_Mutation_p.P327S|TOM1_uc011aml.1_Missense_Mutation_p.P282S|TOM1_uc003ano.2_RNA|TOM1_uc003anq.2_Missense_Mutation_p.P321S|TOM1_uc003anr.2_Missense_Mutation_p.P170S	NM_005488	NP_005479	O60784	TOM1_HUMAN	target of myb1 isoform 1	327					endocytosis|endosome transport|intracellular protein transport	cytosol|early endosome|membrane	protein binding			ovary(1)	1						TCGACATGGGCCCTGACCCAGC	0.609													16	35					0	0	0.004672	0	0
C1QTNF6	114904	broad.mit.edu	37	22	37581424	37581424	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr22:37581424G>A	uc003aqw.1	-	1	571	c.66C>T	c.(64-66)ATC>ATT	p.I22I	C1QTNF6_uc003aqx.1_Silent_p.I41I|C1QTNF6_uc003aqy.1_Silent_p.I41I|C1QTNF6_uc003aqz.1_RNA	NM_182486	NP_872292	Q9BXI9	C1QT6_HUMAN	C1q and tumor necrosis factor related protein 6	22						collagen					0						CCACCATAGGGATCTCACACA	0.597													31	41					0	0	0.009535	0	0
CACNA1I	8911	broad.mit.edu	37	22	40045903	40045903	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr22:40045903C>T	uc003ayc.2	+	10	1965	c.1965C>T	c.(1963-1965)GTC>GTT	p.V655V	CACNA1I_uc003ayd.2_Silent_p.V620V|CACNA1I_uc003aye.2_Silent_p.V570V|CACNA1I_uc003ayf.2_Silent_p.V535V	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	655	Helical; Name=S1 of repeat II; (Potential).|II.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	TCAACACCGTCAGCATGGGCA	0.687													21	43					0	0	0.006320	0	0
CACNA1I	8911	broad.mit.edu	37	22	40064311	40064311	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr22:40064311C>T	uc003ayc.2	+	24	4119	c.4119C>T	c.(4117-4119)CTC>CTT	p.L1373L	CACNA1I_uc003ayd.2_Silent_p.L1338L|CACNA1I_uc003aye.2_Silent_p.L1288L|CACNA1I_uc003ayf.2_Silent_p.L1253L	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1373	Extracellular (Potential).|III.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	TGATGTCCCTCTTTGTCCTGG	0.572													18	25					0	0	0.012319	0	0
FAM19A5	25817	broad.mit.edu	37	22	49103614	49103614	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr22:49103614C>T	uc003bim.3	+	3	465	c.348C>T	c.(346-348)GGC>GGT	p.G116G	FAM19A5_uc003bio.3_Silent_p.G109G	NM_001082967	NP_001076436	Q7Z5A7	F19A5_HUMAN	family with sequence similarity 19 (chemokine	116						extracellular region|integral to membrane				large_intestine(1)	1		all_cancers(38;2.95e-11)|all_epithelial(38;3.07e-10)|all_lung(38;2.89e-05)|Breast(42;0.000396)|Lung NSC(38;0.000471)|Ovarian(80;0.00934)|Lung SC(80;0.195)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0227)|BRCA - Breast invasive adenocarcinoma(115;0.119)		ACCGGTCAGGCTGGACGTGCA	0.592													69	74					0	0	0.014410	0	0
SRGAP3	9901	broad.mit.edu	37	3	9036073	9036073	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:9036073C>T	uc003brf.1	-	19	3038	c.2362G>A	c.(2362-2364)GGC>AGC	p.G788S	SRGAP3_uc003brg.1_Missense_Mutation_p.G764S	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	788					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		CCATCCACGCCGTTGTGCCGG	0.517			T	RAF1	pilocytic astrocytoma								28	58					0	0	0.006320	0	0
SLC6A1	6529	broad.mit.edu	37	3	11067514	11067514	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:11067514C>T	uc010hdq.2	+	9	1316	c.905C>T	c.(904-906)TCC>TTC	p.S302F		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	302	Helical; Name=6; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	GGCCTGGGGTCCCTGATCGCT	0.537													22	77					0	0	0.003330	0	0
MKRN2	23609	broad.mit.edu	37	3	12610448	12610448	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:12610448C>T	uc003bxd.2	+	2	157	c.101C>T	c.(100-102)TCC>TTC	p.S34F	MKRN2_uc003bxe.2_Missense_Mutation_p.S34F|MKRN2_uc011aus.1_Intron	NM_014160	NP_054879	Q9H000	MKRN2_HUMAN	makorin ring finger protein 2	34	C3H1-type 2.					intracellular	ligase activity|nucleic acid binding|zinc ion binding				0						AGCAAACCGTCCACCATCTGC	0.488													20	32					0	0	0.014323	0	0
DLEC1	9940	broad.mit.edu	37	3	38087107	38087107	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:38087107G>A	uc003cho.1	+	2	506	c.485G>A	c.(484-486)CGG>CAG	p.R162Q	DLEC1_uc003chp.1_Missense_Mutation_p.R162Q|DLEC1_uc010hgv.1_Missense_Mutation_p.R162Q	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	162					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		GCCCAAGCACGGGCTATTGCG	0.493													28	61					0	0	0.009535	0	0
SCN10A	6336	broad.mit.edu	37	3	38739846	38739846	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:38739846G>A	uc003ciq.2	-	27	4865	c.4865C>T	c.(4864-4866)TCT>TTT	p.S1622F		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1622	IV.|Helical; Name=S5 of repeat IV; (Potential).				sensory perception	voltage-gated sodium channel complex		p.S1622F(1)		ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	ACCGAAGATAGAGTAGATGAA	0.547													34	84					0	0	0.003271	0	0
SCN11A	11280	broad.mit.edu	37	3	38927694	38927694	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:38927694C>T	uc011ays.1	-	16	3070	c.2871G>A	c.(2869-2871)ACG>ACA	p.T957T	SCN11A_uc010hhn.1_Intron	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	957					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CTCTCTGGCTCGTGGGCTTCT	0.443													29	34					0	0	0.009535	0	0
CSRNP1	64651	broad.mit.edu	37	3	39185379	39185379	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:39185379C>T	uc003cjg.2	-	5	1151	c.937G>A	c.(937-939)GAG>AAG	p.E313K	CSRNP1_uc003cjh.2_Missense_Mutation_p.E313K	NM_033027	NP_149016	Q96S65	CSRN1_HUMAN	AXIN1 up-regulated 1	313					apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(4)|skin(1)	5						GCAGGGGCCTCCAGCTCCCTA	0.602													8	27					0	0	0.003080	0	0
ZNF619	285267	broad.mit.edu	37	3	40529712	40529712	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:40529712C>T	uc011azb.1	+	6	2109	c.1831C>T	c.(1831-1833)CCT>TCT	p.P611S	ZNF619_uc010hhz.2_Missense_Mutation_p.P562S|ZNF619_uc003ckj.2_Missense_Mutation_p.P555S|ZNF619_uc011azc.1_Missense_Mutation_p.P571S|ZNF619_uc011azd.1_Missense_Mutation_p.P527S|ZNF619_uc011aza.1_Missense_Mutation_p.P513S	NM_001145082	NP_001138554	E9PCD9	E9PCD9_HUMAN	zinc finger protein 619 isoform 1	611					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		GAGCCCGAATCCTTTGTCTCA	0.473													24	66					0	0	0.003954	0	0
SNRK	54861	broad.mit.edu	37	3	43389431	43389431	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:43389431C>T	uc003cms.3	+	7	2012	c.1680C>T	c.(1678-1680)TTC>TTT	p.F560F	SNRK_uc003cmt.3_Silent_p.F560F|SNRK_uc010hik.2_Silent_p.F560F|SNRK_uc011azr.1_Silent_p.F354F	NM_017719	NP_060189	Q9NRH2	SNRK_HUMAN	SNF related kinase	560					myeloid cell differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.0636)|Kidney(284;0.0792)		ATAGCGGGTTCACCTACTCCT	0.637													30	27					0	0	0.012213	0	0
ANO10	55129	broad.mit.edu	37	3	43591317	43591317	+	Silent	SNP	A	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:43591317A>G	uc003cmv.2	-	11	1863	c.1692T>C	c.(1690-1692)GTT>GTC	p.V564V	ANO10_uc011azs.1_Silent_p.V564V|ANO10_uc003cmw.2_Silent_p.V498V|ANO10_uc010hil.2_Silent_p.V374V|ANO10_uc011azt.1_Silent_p.V453V	NM_018075	NP_060545	Q9NW15	ANO10_HUMAN	transmembrane protein 16K	564	Helical; (Potential).				cell death	chloride channel complex	chloride channel activity			ovary(2)	2						CCACAGATATAACACTCATCG	0.358													11	34					0	0	0.013537	0	0
BSN	8927	broad.mit.edu	37	3	49662608	49662608	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:49662608C>T	uc003cxe.3	+	2	539	c.425C>T	c.(424-426)CCC>CTC	p.P142L		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	142					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GGGCGGTCCCCCTCAGTGTCA	0.647													30	15					0	0	0.008361	0	0
DNAH1	25981	broad.mit.edu	37	3	52433084	52433084	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:52433084G>A	uc011bef.1	+	76	12569	c.12308G>A	c.(12307-12309)TGG>TAG	p.W4103*	DNAH1_uc003ddv.2_Nonsense_Mutation_p.W961*	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	4168					ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CTGCAGGCCTGGATCCAAGAT	0.542													114	87					0	0	0.014410	0	0
ITIH4	3700	broad.mit.edu	37	3	52852126	52852126	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:52852126G>A	uc003dfz.2	-	20	2274	c.2238C>T	c.(2236-2238)CTC>CTT	p.L746L	ITIH4_uc011bel.1_Silent_p.L460L|ITIH4_uc003dfy.2_Intron|ITIH4_uc011bem.1_Silent_p.L751L|ITIH4_uc011ben.1_Silent_p.L716L	NM_002218	NP_002209	Q14624	ITIH4_HUMAN	inter-alpha (globulin) inhibitor H4	746					acute-phase response|hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		GGTCCACACAGAGCCGCTCCA	0.667													33	34					0	0	0.004289	0	0
LRTM1	57408	broad.mit.edu	37	3	54959009	54959009	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:54959009A>C	uc003dhl.2	-	2	375	c.241T>G	c.(241-243)TTG>GTG	p.L81V	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	81	Extracellular (Potential).|LRR 2.					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		TTGTTGGACAAGTTTAAGGTC	0.448													13	34					0	0	0.001855	0	0
CACNA2D3	55799	broad.mit.edu	37	3	55038833	55038833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:55038833G>A	uc003dhf.2	+	32	2782	c.2734G>A	c.(2734-2736)GAA>AAA	p.E912K	CACNA2D3_uc003dhg.1_Missense_Mutation_p.E818K|CACNA2D3_uc003dhh.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	912	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		AGCCAACAAGGAAAGCAGCGA	0.458													11	60					0	0	0.010729	0	0
CACNA2D3	55799	broad.mit.edu	37	3	55052300	55052300	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:55052300C>T	uc003dhf.2	+	35	2991	c.2943C>T	c.(2941-2943)ACC>ACT	p.T981T	CACNA2D3_uc003dhg.1_Silent_p.T887T|CACNA2D3_uc003dhh.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	981	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		CTGAGCGCACCATCAAGGAGA	0.478													8	20					0	0	0.006214	0	0
ERC2	26059	broad.mit.edu	37	3	55922539	55922539	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:55922539C>T	uc003dhr.1	-	14	2698	c.2442G>A	c.(2440-2442)CAG>CAA	p.Q814Q	ERC2_uc003dhq.1_RNA|ERC2_uc003dht.1_Silent_p.Q293Q	NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	814	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		CATCCAGTTCCTGTCTGGTCT	0.517													48	123					0	0	0.014410	0	0
CADPS	8618	broad.mit.edu	37	3	62543093	62543093	+	Silent	SNP	G	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:62543093G>T	uc003dll.2	-	10	2100	c.1740C>A	c.(1738-1740)ACC>ACA	p.T580T	CADPS_uc003dlk.1_Silent_p.T84T|CADPS_uc003dlm.2_Silent_p.T580T|CADPS_uc003dln.2_Silent_p.T580T	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	580	PH.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		GCTGGGGGTCGGTGTAATCCA	0.463													67	59					2.60599e-31	2.93637e-31	0.014410	1	0
ROBO2	6092	broad.mit.edu	37	3	77612324	77612324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:77612324G>A	uc003dpy.3	+	11	2169	c.1526G>A	c.(1525-1527)GGA>GAA	p.G509E	ROBO2_uc003dpz.2_Missense_Mutation_p.G513E|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.G513E	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	509	Extracellular (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		ATAGAGTCTGGAGCAACAATC	0.433													14	23					0	0	0.001855	0	0
CADM2	253559	broad.mit.edu	37	3	85935391	85935391	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:85935391G>A	uc003dqj.2	+	4	1042	c.416G>A	c.(415-417)GGT>GAT	p.G139D	CADM2_uc003dqk.2_Missense_Mutation_p.G148D|CADM2_uc003dql.2_Missense_Mutation_p.G141D	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	139	Ig-like C2-type 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		GTTATGGAGGGTGACTTGATG	0.383													10	29					0	0	0.008291	0	0
CADM2	253559	broad.mit.edu	37	3	85961612	85961612	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:85961612G>A	uc003dqj.2	+	5	1218	c.592G>A	c.(592-594)GGA>AGA	p.G198R	CADM2_uc003dqk.2_Missense_Mutation_p.G207R|CADM2_uc003dql.2_Missense_Mutation_p.G200R	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	198	Ig-like C2-type 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		GAGTGATGATGGAGTGGCGGT	0.453													15	29					0	0	0.004990	0	0
VGLL3	389136	broad.mit.edu	37	3	87017746	87017746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:87017746C>T	uc003dqn.2	-	3	1295	c.931G>A	c.(931-933)GAT>AAT	p.D311N		NM_016206	NP_057290	A8MV65	VGLL3_HUMAN	colon carcinoma related protein	311					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	all_cancers(8;0.109)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00241)|Lung(72;0.00712)		TTACCTGTATCGAATCCCACG	0.393													4	36					0	0	0.009096	0	0
EPHA6	285220	broad.mit.edu	37	3	97356763	97356763	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:97356763G>A	uc010how.1	+	14	2664	c.2621G>A	c.(2620-2622)CGA>CAA	p.R874Q	EPHA6_uc011bgp.1_3'UTR|EPHA6_uc003drs.3_Missense_Mutation_p.R266Q|EPHA6_uc003drr.3_Missense_Mutation_p.R266Q|EPHA6_uc003drt.2_Missense_Mutation_p.R266Q|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	779	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						GGAATGCTCCGAGGCATTGCA	0.423													52	119					0	0	0.014410	0	0
EPHA6	285220	broad.mit.edu	37	3	97466295	97466295	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:97466295G>A	uc010how.1	+	17	3200	c.3157G>A	c.(3157-3159)GAA>AAA	p.E1053K	EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	958	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						TGAAGTTCCGGAATATCCTTT	0.378													5	12					0	0	0.000602	0	0
MYH15	22989	broad.mit.edu	37	3	108129561	108129561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:108129561G>A	uc003dxa.1	-	32	4481	c.4424C>T	c.(4423-4425)TCC>TTC	p.S1475F		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1475	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CAACGCCTGGGACTCCTCGTG	0.597													11	41					0	0	0.013537	0	0
DZIP3	9666	broad.mit.edu	37	3	108363029	108363029	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:108363029A>T	uc003dxd.2	+	14	1582	c.1160A>T	c.(1159-1161)AAG>ATG	p.K387M	DZIP3_uc003dxf.1_Missense_Mutation_p.K387M|DZIP3_uc011bhm.1_Intron|DZIP3_uc003dxe.1_Missense_Mutation_p.K387M|DZIP3_uc003dxg.1_Missense_Mutation_p.K110M	NM_014648	NP_055463	Q86Y13	DZIP3_HUMAN	DAZ interacting protein 3, zinc finger	387					protein polyubiquitination	cytoplasm	polyubiquitin binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						CCTATCTTCAAGCTTGATTAT	0.323													23	27					0	0	0.003330	0	0
TIGIT	201633	broad.mit.edu	37	3	114014634	114014634	+	Missense_Mutation	SNP	G	A	A	rs146935299	by1000genomes	TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:114014634G>A	uc003ebg.1	+	2	338	c.304G>A	c.(304-306)GAT>AAT	p.D102N		NM_173799	NP_776160	Q495A1	TIGIT_HUMAN	T cell immunoreceptor with Ig and ITIM domains	102	Extracellular (Potential).|Ig-like V-type.				negative regulation of interleukin-12 production|negative regulation of T cell activation|positive regulation of interleukin-10 production	cell surface|integral to membrane|plasma membrane	protein binding			central_nervous_system(1)	1						GACCGTGAACGATACAGGGGA	0.567													26	26					0	0	0.004656	0	0
HGD	3081	broad.mit.edu	37	3	120360465	120360465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:120360465C>T	uc003edw.2	-	11	1220	c.850G>A	c.(850-852)GTT>ATT	p.V284I	HGD_uc003edv.2_Missense_Mutation_p.V143I	NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	284					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		GAGTTGATAACCATGAAATTC	0.502													52	36					0	0	0.014410	0	0
HGD	3081	broad.mit.edu	37	3	120369647	120369647	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:120369647G>A	uc003edw.2	-	6	778	c.408C>T	c.(406-408)TTC>TTT	p.F136F	HGD_uc003edv.2_5'UTR	NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	136					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		TATTGCAGAGGAAAATGTGGA	0.483													36	92					0	0	0.006230	0	0
ARGFX	503582	broad.mit.edu	37	3	121289566	121289566	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:121289566G>A	uc003eef.2	+	2	101	c.6G>A	c.(4-6)AGG>AGA	p.R2R		NM_001012659	NP_001012677	A6NJG6	ARGFX_HUMAN	arginine-fifty homeobox	2						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(114;0.152)		AAACCATGAGGAACAGAATGG	0.473													27	31					0	0	0.007291	0	0
ARGFX	503582	broad.mit.edu	37	3	121289648	121289648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:121289648G>A	uc003eef.2	+	2	183	c.88G>A	c.(88-90)GAT>AAT	p.D30N		NM_001012659	NP_001012677	A6NJG6	ARGFX_HUMAN	arginine-fifty homeobox	30						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(114;0.152)		ACCACCACAGGATCCAGCTAG	0.443													26	34					0	0	0.005443	0	0
ILDR1	286676	broad.mit.edu	37	3	121720271	121720271	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:121720271C>T	uc003ees.2	-	5	636	c.530G>A	c.(529-531)GGA>GAA	p.G177E	ILDR1_uc003eeq.2_Missense_Mutation_p.G189E|ILDR1_uc003eer.2_Missense_Mutation_p.G177E|ILDR1_uc010hrg.2_Intron	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	177	Helical; (Potential).					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		GAGGAGGGCTCCCAGGATGAT	0.547													6	26					0	0	0.001168	0	0
PARP9	83666	broad.mit.edu	37	3	122274841	122274841	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:122274841G>A	uc010hri.2	-	4	427	c.282C>T	c.(280-282)ACC>ACT	p.T94T	PARP9_uc003eff.3_Silent_p.T59T|PARP9_uc011bjs.1_Silent_p.T59T|PARP9_uc003efg.2_Intron|PARP9_uc003efi.2_Silent_p.T59T|PARP9_uc003efh.2_Silent_p.T94T|PARP9_uc003efj.2_Silent_p.T59T	NM_001146102	NP_001139574	Q8IXQ6	PARP9_HUMAN	poly (ADP-ribose) polymerase family, member 9	94					cell migration	cytosol|nucleus	NAD+ ADP-ribosyltransferase activity|protein binding			ovary(1)|pancreas(1)|prostate(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0519)		GAGAGACCAGGGTAGAGATAC	0.413													16	19					0	0	0.003163	0	0
KALRN	8997	broad.mit.edu	37	3	124414982	124414982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:124414982G>A	uc003ehg.2	+	54	7706	c.7579G>A	c.(7579-7581)GAT>AAT	p.D2527N	KALRN_uc003ehk.2_Missense_Mutation_p.D830N	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2526	Ig-like C2-type.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						TGTCCCTAGTGATTCTGGAGA	0.483													45	112					0	0	0.014410	0	0
UROC1	131669	broad.mit.edu	37	3	126224622	126224622	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:126224622G>A	uc003eiz.1	-	8	767	c.735C>T	c.(733-735)GTC>GTT	p.V245V	UROC1_uc010hsi.1_Silent_p.V245V	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	245					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		GCCCAGAGGTGACAAAGACCT	0.597													17	32					0	0	0.007413	0	0
CPNE4	131034	broad.mit.edu	37	3	131404763	131404763	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:131404763G>A	uc003eok.2	-	6	982	c.547C>T	c.(547-549)CGT>TGT	p.R183C	CPNE4_uc011blq.1_Missense_Mutation_p.R201C|CPNE4_uc003eol.2_Missense_Mutation_p.R201C|CPNE4_uc003eom.2_Missense_Mutation_p.R183C	NM_130808	NP_570720	Q96A23	CPNE4_HUMAN	copine IV	183	C2 2.									upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TCATTCATACGAAAAATTTCC	0.383													6	21					0	0	0.001168	0	0
COPB2	9276	broad.mit.edu	37	3	139092233	139092233	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:139092233T>C	uc003etf.3	-	9	1046	c.916A>G	c.(916-918)ATG>GTG	p.M306V	COPB2_uc011bmv.1_Missense_Mutation_p.M277V|COPB2_uc010hui.2_Missense_Mutation_p.M277V	NM_004766	NP_004757	P35606	COPB2_HUMAN	coatomer protein complex, subunit beta 2 (beta	306					COPI coating of Golgi vesicle|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol	protein binding|structural molecule activity			ovary(2)	2						TCCATGGACATGGCAGGTTCC	0.398													13	37					0	0	0.003163	0	0
SLC25A36	55186	broad.mit.edu	37	3	140695203	140695203	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:140695203C>T	uc003etr.2	+	7	1079	c.844C>T	c.(844-846)CGT>TGT	p.R282C	SLC25A36_uc003ets.2_Missense_Mutation_p.R281C|SLC25A36_uc003etq.2_Missense_Mutation_p.R125C|SLC25A36_uc011bmz.1_Missense_Mutation_p.R256C	NM_001104647	NP_001098117	Q96CQ1	S2536_HUMAN	solute carrier family 25, member 36 isoform a	282	Solcar 3.				response to estradiol stimulus|transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0						GTCTCTTTATCGTGGTCTGAC	0.403													12	37					0	0	0.010729	0	0
AGTR1	185	broad.mit.edu	37	3	148459398	148459398	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:148459398G>A	uc003ewg.2	+	4	1022	c.576G>A	c.(574-576)CCG>CCA	p.P192P	AGTR1_uc003ewh.2_Silent_p.P192P|AGTR1_uc003ewi.2_Silent_p.P192P|AGTR1_uc003ewj.2_Silent_p.P192P|AGTR1_uc003ewk.2_Silent_p.P192P	NM_031850	NP_114038	P30556	AGTR1_HUMAN	angiotensin II receptor, type 1	192	Extracellular (Potential).				calcium-mediated signaling|cell chemotaxis|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|kidney development|low-density lipoprotein particle remodeling|positive regulation of cellular protein metabolic process|positive regulation of cholesterol esterification|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of phospholipase A2 activity|positive regulation of reactive oxygen species metabolic process|regulation of cell growth|regulation of cell proliferation|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|Rho protein signal transduction		acetyltransferase activator activity|angiotensin type I receptor activity|angiotensin type II receptor activity|bradykinin receptor binding|protein heterodimerization activity				0			LUSC - Lung squamous cell carcinoma(72;0.127)|Lung(72;0.152)		Candesartan(DB00796)|Eprosartan(DB00876)|Forasartan(DB01342)|Irbesartan(DB01029)|Losartan(DB00678)|Olmesartan(DB00275)|Saprisartan(DB01347)|Spironolactone(DB00421)|Tasosartan(DB01349)|Telmisartan(DB00966)|Valsartan(DB00177)	CAACCCTCCCGATAGGGCTGG	0.393													29	32					0	0	0.007291	0	0
FAM194A	131831	broad.mit.edu	37	3	150384765	150384765	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:150384765G>A	uc003eyg.2	-	13	1594	c.1537C>T	c.(1537-1539)CAA>TAA	p.Q513*	FAM194A_uc003eyh.2_Nonsense_Mutation_p.Q367*	NM_152394	NP_689607	Q7L0X2	F194A_HUMAN	hypothetical protein LOC131831	513										skin(2)|ovary(1)	3						TTGCCGGCTTGATCTGAATAT	0.368													62	43					0	0	0.014410	0	0
GPR171	29909	broad.mit.edu	37	3	150916724	150916724	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:150916724C>T	uc003eyq.3	-	3	690	c.450G>A	c.(448-450)ATG>ATA	p.M150I	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_013308	NP_037440	O14626	GP171_HUMAN	G protein-coupled receptor 171	150	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TGGGAATCATCATATTTGGCA	0.378													30	27					0	0	0.010818	0	0
VEPH1	79674	broad.mit.edu	37	3	157178109	157178109	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:157178109G>A	uc003fbj.1	-	4	707	c.390C>T	c.(388-390)ATC>ATT	p.I130I	VEPH1_uc003fbk.1_Silent_p.I130I|VEPH1_uc010hvu.1_Silent_p.I130I|VEPH1_uc003fbm.2_Silent_p.I130I|VEPH1_uc003fbn.2_Silent_p.I130I	NM_024621	NP_078897	Q14D04	MELT_HUMAN	ventricular zone expressed PH domain homolog 1	130						plasma membrane				breast(3)|ovary(1)|lung(1)	5			Lung(72;0.0272)|LUSC - Lung squamous cell carcinoma(72;0.0461)			CTGCAATGGGGATGGCTAATG	0.393													37	29					0	0	0.003755	0	0
ZBBX	79740	broad.mit.edu	37	3	167031864	167031864	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:167031864C>T	uc003fep.2	-	16	1638	c.1315G>A	c.(1315-1317)GAA>AAA	p.E439K	ZBBX_uc011bpc.1_Missense_Mutation_p.E439K|ZBBX_uc003feq.2_Missense_Mutation_p.E410K	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	439						intracellular	zinc ion binding			ovary(2)	2						ATGCCATTTTCATATGGAAAG	0.289													25	51					0	0	0.003954	0	0
FNDC3B	64778	broad.mit.edu	37	3	172046830	172046830	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:172046830C>T	uc003fhy.2	+	12	1515	c.1343C>T	c.(1342-1344)ACA>ATA	p.T448I	FNDC3B_uc003fhz.3_Missense_Mutation_p.T448I|FNDC3B_uc003fia.2_Missense_Mutation_p.T379I	NM_022763	NP_073600	Q53EP0	FND3B_HUMAN	fibronectin type III domain containing 3B	448	Fibronectin type-III 2.			T -> A (in Ref. 3; BAG37083).		endoplasmic reticulum|integral to membrane				ovary(2)|breast(1)	3	all_cancers(22;1.01e-18)|Ovarian(172;0.00167)|Breast(254;0.165)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)	GBM - Glioblastoma multiforme(1;0.0494)		ATGGGGTACACATTCAGGCTG	0.483													28	102					0	0	0.007291	0	0
EPHB3	2049	broad.mit.edu	37	3	184299085	184299085	+	Missense_Mutation	SNP	C	T	T	rs143430250	byFrequency	TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:184299085C>T	uc003foz.2	+	15	3214	c.2777C>T	c.(2776-2778)ACC>ATC	p.T926I		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	926	Cytoplasmic (Potential).|SAM.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			GATTACACAACCTTCACGACA	0.562													49	48					0	0	0.014410	0	0
HRG	3273	broad.mit.edu	37	3	186394992	186394992	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:186394992C>T	uc003fqq.2	+	7	921	c.898C>T	c.(898-900)CCT>TCT	p.P300S		NM_000412	NP_000403	P04196	HRG_HUMAN	histidine-rich glycoprotein precursor	300	Pro-rich.				fibrinolysis|platelet activation|platelet degranulation	extracellular region|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding			ovary(1)|central_nervous_system(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0683)		ACCCCCACCTCCTCCAGATGA	0.532													47	33					0	0	0.014410	0	0
TP63	8626	broad.mit.edu	37	3	189587118	189587118	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:189587118C>T	uc003fry.2	+	9	1224	c.1135C>T	c.(1135-1137)CGT>TGT	p.R379C	TP63_uc003frx.2_Missense_Mutation_p.R379C|TP63_uc003frz.2_Missense_Mutation_p.R379C|TP63_uc010hzc.1_Missense_Mutation_p.R379C|TP63_uc003fsa.2_Missense_Mutation_p.R285C|TP63_uc003fsb.2_Missense_Mutation_p.R285C|TP63_uc003fsc.2_Missense_Mutation_p.R285C|TP63_uc003fsd.2_Missense_Mutation_p.R285C|TP63_uc010hzd.1_Missense_Mutation_p.R200C|TP63_uc003fse.1_Missense_Mutation_p.R256C	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	379	Interaction with HIPK2.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		ACCAGCGTTTCGTCAGAACAC	0.348									Hay-Wells_syndrome	HNSCC(45;0.13)			12	28					0	0	0.003163	0	0
SDHAP1	255812	broad.mit.edu	37	3	195701304	195701304	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:195701304C>T	uc011btq.1	-	8	1189	c.560G>A	c.(559-561)GGC>GAC	p.G187D	SDHAP1_uc003fvx.3_RNA|SDHAP1_uc011btp.1_RNA					SubName: Full=cDNA FLJ56858, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						AGGGCACATGCCTGACCAGAC	0.572													6	39					0	0	0.001984	0	0
FAM193A	8603	broad.mit.edu	37	4	2695495	2695495	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:2695495A>C	uc010icl.2	+	14	2464	c.2113A>C	c.(2113-2115)ACA>CCA	p.T705P	FAM193A_uc010ick.2_Missense_Mutation_p.T905P|FAM193A_uc003gfd.2_Missense_Mutation_p.T705P|FAM193A_uc011bvm.1_Missense_Mutation_p.T727P|FAM193A_uc011bvn.1_Missense_Mutation_p.T705P|FAM193A_uc011bvo.1_RNA|FAM193A_uc010icm.2_RNA|FAM193A_uc003gfe.2_Missense_Mutation_p.T559P	NM_003704	NP_003695	P78312	F193A_HUMAN	hypothetical protein LOC8603	705										ovary(3)	3						ATTCCCCAAAACAGCAACCAC	0.607													65	78					0	0	0.014410	0	0
FAM193A	8603	broad.mit.edu	37	4	2701659	2701659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:2701659C>T	uc010icl.2	+	17	3238	c.2887C>T	c.(2887-2889)CCT>TCT	p.P963S	FAM193A_uc010ick.2_Missense_Mutation_p.P1163S|FAM193A_uc003gfd.2_Missense_Mutation_p.P963S|FAM193A_uc011bvm.1_Missense_Mutation_p.P985S|FAM193A_uc011bvn.1_Missense_Mutation_p.P963S|FAM193A_uc011bvo.1_RNA|FAM193A_uc010icm.2_RNA|FAM193A_uc003gfe.2_Missense_Mutation_p.P817S	NM_003704	NP_003695	P78312	F193A_HUMAN	hypothetical protein LOC8603	963										ovary(3)	3						AGAGTCTGTTCCTAACTCTGG	0.473													31	54					0	0	0.009535	0	0
RGS12	6002	broad.mit.edu	37	4	3318942	3318942	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:3318942C>T	uc003ggw.2	+	2	1949	c.1045C>T	c.(1045-1047)CAC>TAC	p.H349Y	RGS12_uc003ggu.2_Missense_Mutation_p.H349Y|RGS12_uc010ics.1_Intron|RGS12_uc011bvr.1_RNA|RGS12_uc003ggv.2_Missense_Mutation_p.H349Y|RGS12_uc003ggx.1_Missense_Mutation_p.H349Y	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	349						condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		CTTGTTTAATCACAAGATCCA	0.607													36	101					0	0	0.003271	0	0
Unknown	0	broad.mit.edu	37	4	9241988	9241988	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:9241988G>T	uc011bwo.1	+	1	1133	c.881G>T	c.(880-882)TGG>TTG	p.W294L						RecName: Full=Ubiquitin carboxyl-terminal hydrolase 17-like protein 2;          EC=3.1.2.15; AltName: Full=Ubiquitin thioesterase 17-like protein 2; AltName: Full=Ubiquitin-specific-processing protease 17-like protein 2; AltName: Full=Deubiquitinating enzyme 17-like protein 2; AltName: Full=Deubiquitinating protein 3;          Short=DUB-3;																		AAGAGTGAATGGGAAAGACAT	0.522													12	43					1.08611e-07	1.20536e-07	0.010729	1	0
DRD5	1816	broad.mit.edu	37	4	9783797	9783797	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:9783797C>T	uc003gmb.3	+	1	540	c.144C>T	c.(142-144)ACC>ACT	p.T48T		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	48	Helical; Name=1; (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	GCCTGCTGACCCTACTCATCA	0.677													10	14					0	0	0.008291	0	0
WDR1	9948	broad.mit.edu	37	4	10105519	10105519	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:10105519C>T	uc003gmf.2	-	3	512	c.229_splice	c.e3+1	p.D77_splice	WDR1_uc003gmg.2_Intron	NM_017491	NP_059830	O75083	WDR1_HUMAN	WD repeat-containing protein 1 isoform 1						platelet activation|platelet degranulation|sensory perception of sound	cytoskeleton|cytosol|extracellular region	actin binding			ovary(2)|pancreas(1)	3				STAD - Stomach adenocarcinoma(129;0.000703)|Colorectal(103;0.0057)|LUSC - Lung squamous cell carcinoma(721;0.0232)		CCATACAGTACCTCCGGAGGC	0.642													4	6					0	0	0.000602	0	0
FGFBP2	83888	broad.mit.edu	37	4	15964408	15964408	+	Silent	SNP	G	A	A	rs141225215		TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:15964408G>A	uc003gon.2	-	1	452	c.345C>T	c.(343-345)TCC>TCT	p.S115S		NM_031950	NP_114156	Q9BYJ0	FGFP2_HUMAN	killer-specific secretory protein of 37 kDa	115						extracellular space	growth factor binding				0						CCCTGCACACGGATGGCCTAA	0.647													19	54					0	0	0.008871	0	0
NCAPG	64151	broad.mit.edu	37	4	17829963	17829963	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:17829963C>T	uc003gpp.2	+	12	1892	c.1716C>T	c.(1714-1716)TCC>TCT	p.S572S	NCAPG_uc011bxj.1_Silent_p.S81S	NM_022346	NP_071741	Q9BPX3	CND3_HUMAN	chromosome condensation protein G	572					cell division|mitotic chromosome condensation	condensin complex|cytoplasm|nucleus	protein binding			large_intestine(1)	1				STAD - Stomach adenocarcinoma(129;0.18)		AGCAGATGTCCATTTCAACAG	0.343													22	44					0	0	0.004656	0	0
SLIT2	9353	broad.mit.edu	37	4	20493457	20493457	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:20493457C>T	uc003gpr.1	+	9	1053	c.849C>T	c.(847-849)ATC>ATT	p.I283I	SLIT2_uc003gps.1_Silent_p.I283I	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	283	LRRNT 2.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						GCAACAATATCGTAGACTGTC	0.433													52	73					0	0	0.014410	0	0
SLIT2	9353	broad.mit.edu	37	4	20620478	20620478	+	Missense_Mutation	SNP	G	A	A	rs147726667		TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:20620478G>A	uc003gpr.1	+	37	4640	c.4436G>A	c.(4435-4437)CGA>CAA	p.R1479Q	SLIT2_uc003gps.1_Missense_Mutation_p.R1471Q	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1479	CTCK.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						AAGGTGTCCCGATTAGAGTGC	0.507													25	18					0	0	0.002780	0	0
TLR6	10333	broad.mit.edu	37	4	38829400	38829400	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:38829400T>A	uc003gtm.2	-	1	1761	c.1695A>T	c.(1693-1695)GAA>GAT	p.E565D	TLR6_uc010ifg.1_Missense_Mutation_p.E565D	NM_006068	NP_006059	Q9Y2C9	TLR6_HUMAN	toll-like receptor 6 precursor	565	LRRCT.|Extracellular (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to diacyl bacterial lipopeptide|defense response to bacterium|detection of diacyl bacterial lipopeptide|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-6 biosynthetic process|positive regulation of JUN kinase activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	integral to plasma membrane|phagocytic vesicle membrane	lipopeptide binding|transmembrane receptor activity			ovary(2)	2						CTCTATAACTTTCTGGGTAGT	0.428													70	89					0	0	0.014410	0	0
RHOH	399	broad.mit.edu	37	4	40245215	40245215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:40245215C>T	uc003guz.2	+	3	933	c.209C>T	c.(208-210)CCC>CTC	p.P70L		NM_004310	NP_004301	Q15669	RHOH_HUMAN	ras homolog gene family, member H precursor	70					negative regulation of I-kappaB kinase/NF-kappaB cascade|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|T cell differentiation	cytosol|mitochondrion|plasma membrane	GTP binding|GTPase inhibitor activity|kinase inhibitor activity|Rho GTPase binding			ovary(1)|lung(1)	2						AGCATCCGGCCCCTGTCCTAC	0.547													28	22					0	0	0.008361	0	0
GRXCR1	389207	broad.mit.edu	37	4	43032542	43032542	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:43032542G>A	uc003gwt.2	+	4	858	c.858G>A	c.(856-858)AAG>AAA	p.K286K		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	286					cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						AGCGTTGTAAGAACTGTGCTG	0.378													56	90					0	0	0.014410	0	0
GABRA2	2555	broad.mit.edu	37	4	46252598	46252598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:46252598C>T	uc003gxc.3	-	9	1756	c.1083G>A	c.(1081-1083)ATG>ATA	p.M361I	GABRA2_uc010igc.2_Missense_Mutation_p.M361I|GABRA2_uc011bzc.1_Missense_Mutation_p.M366I	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	361	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TGTTCTGTATCATAACGGAAG	0.398													68	88					0	0	0.014410	0	0
TECRL	253017	broad.mit.edu	37	4	65175549	65175549	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:65175549T>C	uc003hcv.2	-	6	761	c.652A>G	c.(652-654)ATA>GTA	p.I218V	TECRL_uc003hcw.2_Missense_Mutation_p.I218V	NM_001010874	NP_001010874	Q5HYJ1	TECRL_HUMAN	steroid 5 alpha-reductase 2-like 2	218	Helical; (Potential).				lipid metabolic process	cytoplasm|integral to membrane	oxidoreductase activity, acting on the CH-CH group of donors				0						CTCACCATTATCAAATTTTTC	0.333													60	55					0	0	0.014410	0	0
UGT2B28	54490	broad.mit.edu	37	4	70156464	70156464	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:70156464G>A	uc003hej.2	+	5	1247	c.1245G>A	c.(1243-1245)CTG>CTA	p.L415L	UGT2B28_uc010ihr.2_Intron	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	415					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	CTGTTAGACTGGACTTCCACA	0.438													63	85					0	0	0.014410	0	0
UGT2B4	7363	broad.mit.edu	37	4	70351018	70351018	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:70351018C>T	uc003hek.3	-	5	1265	c.1218G>A	c.(1216-1218)ATG>ATA	p.M406I	UGT2B4_uc011cap.1_Missense_Mutation_p.M270I|UGT2B4_uc003hel.3_Intron	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	406					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						CCTTGGCCTTCATGTGTGCAA	0.448													87	126					0	0	0.014410	0	0
C4orf40	401137	broad.mit.edu	37	4	71024285	71024285	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:71024285C>T	uc003hfa.3	+	4	389	c.316C>T	c.(316-318)CCT>TCT	p.P106S	C4orf40_uc003hfb.3_Missense_Mutation_p.P106S	NM_214711	NP_999876	Q6MZM9	CD040_HUMAN	hypothetical protein LOC401137 precursor	106						extracellular region					0						TCCTCTCCCTCCTAGGGGTTT	0.527													110	148					0	0	0.014410	0	0
NPFFR2	10886	broad.mit.edu	37	4	73003804	73003804	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:73003804G>A	uc003hgg.2	+	3	780	c.682G>A	c.(682-684)GGA>AGA	p.G228R	NPFFR2_uc010iig.1_Missense_Mutation_p.G10R|NPFFR2_uc003hgi.2_Missense_Mutation_p.G129R|NPFFR2_uc003hgh.2_Missense_Mutation_p.G126R	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	228	Helical; Name=3; (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			ATTGGTCCAGGGAATATCTGT	0.398													25	33					0	0	0.009535	0	0
PPEF2	5470	broad.mit.edu	37	4	76794331	76794331	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:76794331G>A	uc003hix.2	-	12	1812	c.1455C>T	c.(1453-1455)ATC>ATT	p.I485I	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Silent_p.I485I	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	485	Catalytic.				detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			CATGTGAACGGATCAGGAATT	0.478													33	51					0	0	0.013726	0	0
WDFY3	23001	broad.mit.edu	37	4	85594125	85594125	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:85594125C>T	uc003hpd.2	-	68	10885	c.10477G>A	c.(10477-10479)GAA>AAA	p.E3493K	WDFY3_uc003hpc.2_Missense_Mutation_p.E248K	NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	3493	FYVE-type.					cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		CGTTTGATTTCAGATTGAAAG	0.408													32	46					0	0	0.013726	0	0
MMRN1	22915	broad.mit.edu	37	4	90874301	90874301	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:90874301C>A	uc003hst.2	+	8	3490	c.3419C>A	c.(3418-3420)CCG>CAG	p.P1140Q	MMRN1_uc010iku.2_Missense_Mutation_p.P443Q|MMRN1_uc011cds.1_Missense_Mutation_p.P882Q	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	1140	C1q.				cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		TTTAGAATTCCGTATCTTGGA	0.363													25	51					9.57634e-11	1.06737e-10	0.003330	1	0
ADH1C	126	broad.mit.edu	37	4	100264011	100264011	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:100264011C>T	uc003huu.2	-	8	854	c.769G>A	c.(769-771)GAA>AAA	p.E257K		NM_000669	NP_000660	P00326	ADH1G_HUMAN	class I alcohol dehydrogenase, gamma subunit	257					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	TCAGTCATTTCCTTTAGCACT	0.458									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				206	262					0	0	0.014410	0	0
CENPE	1062	broad.mit.edu	37	4	104096030	104096030	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:104096030G>A	uc003hxb.1	-	16	1600	c.1510C>T	c.(1510-1512)CGT>TGT	p.R504C	CENPE_uc003hxc.1_Missense_Mutation_p.R504C	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	504	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TAGTCAGCACGAAGTGAGTTC	0.269													4	4					0	0	0.009096	0	0
ARSJ	79642	broad.mit.edu	37	4	114824226	114824226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:114824226C>T	uc003ibq.1	-	2	1892	c.1004G>A	c.(1003-1005)GGA>GAA	p.G335E	ARSJ_uc010imu.1_Missense_Mutation_p.G335E|ARSJ_uc010imv.1_Missense_Mutation_p.G163E	NM_024590	NP_078866	Q5FYB0	ARSJ_HUMAN	arylsulfatase J precursor	335						extracellular region	arylsulfatase activity|metal ion binding			ovary(1)	1		Ovarian(17;0.0035)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00194)		GTTACTCCCTCCTGCCGTAGG	0.463													32	46					0	0	0.008361	0	0
PCDH18	54510	broad.mit.edu	37	4	138451383	138451383	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:138451383T>C	uc003ihe.3	-	1	2247	c.1860A>G	c.(1858-1860)ATA>ATG	p.I620M	PCDH18_uc003ihf.3_Missense_Mutation_p.I613M|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.I400M|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	620	Cadherin 6.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TACCTGCTACTATGGCGCAGC	0.448													101	143					0	0	0.014410	0	0
GYPE	2996	broad.mit.edu	37	4	144801625	144801625	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:144801625C>T	uc003ijj.2	-	2	131	c.75G>A	c.(73-75)GTG>GTA	p.V25V	GYPE_uc010ion.2_RNA|GYPE_uc003ijk.3_Silent_p.V25V	NM_198682	NP_941391	P15421	GLPE_HUMAN	glycophorin E precursor	25	Extracellular (Potential).					integral to plasma membrane					0	all_hematologic(180;0.158)					TGTGCATTGCCACACCAGTGG	0.383													14	118					0	0	0.006122	0	0
EDNRA	1909	broad.mit.edu	37	4	148407088	148407088	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:148407088G>A	uc003iky.2	+	2	947	c.255G>A	c.(253-255)GTG>GTA	p.V85V	EDNRA_uc011cid.1_Intron|EDNRA_uc010ipe.1_Silent_p.V85V|EDNRA_uc010ipf.1_RNA|EDNRA_uc010ipg.1_Silent_p.V85V	NM_001957	NP_001948	P25101	EDNRA_HUMAN	endothelin receptor type A isoform a precursor	85	Helical; Name=1; (Potential).				activation of adenylate cyclase activity|artery smooth muscle contraction|cell proliferation|glucose transport|respiratory gaseous exchange	integral to plasma membrane	endothelin-A receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)|breast(1)	2	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.154)	Bosentan(DB00559)	TTAACACTGTGATATCTTGTA	0.428													29	52					0	0	0.009535	0	0
FGB	2244	broad.mit.edu	37	4	155487143	155487143	+	Missense_Mutation	SNP	C	T	T	rs2227434	byFrequency	TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:155487143C>T	uc003ioa.3	+	2	337	c.298C>T	c.(298-300)CCA>TCA	p.P100S	FGB_uc010ipu.1_RNA|FGB_uc003iob.3_Missense_Mutation_p.P97S|FGB_uc010ipv.2_Intron|FGB_uc010ipw.2_Missense_Mutation_p.P97S|FGB_uc003ioc.3_Intron	NM_005141	NP_005132	P02675	FIBB_HUMAN	fibrinogen, beta chain preproprotein	100			Missing (in New York-1).		platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen|soluble fraction	chaperone binding|eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	TCACGCTGACCCAGACCTGGT	0.532													14	21					0	0	0.002450	0	0
NPY5R	4889	broad.mit.edu	37	4	164272439	164272439	+	Silent	SNP	G	A	A	rs144160203	byFrequency	TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:164272439G>A	uc003iqn.2	+	4	1196	c.1014G>A	c.(1012-1014)GAG>GAA	p.E338E		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	338	Cytoplasmic (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				CTTGCTTTGAGATAAAACCTG	0.388													31	23					0	0	0.007291	0	0
TLL1	7092	broad.mit.edu	37	4	167012279	167012280	+	Splice_Site	DNP	GG	AA	AA			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:167012279_167012280GG>AA	uc003irh.1	+	19	3090	c.2443_splice	c.e19-1	p.A815_splice	TLL1_uc011cjn.1_Splice_Site_p.A838_splice|TLL1_uc011cjo.1_Splice_Site_p.A639_splice	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor						cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		ttttaaaaaaGGCCTTTAGTGA	0.292													7	11					0	0	0.004672	0	0
DDX60	55601	broad.mit.edu	37	4	169158505	169158505	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:169158505G>A	uc003irp.2	-	32	4635	c.4343C>T	c.(4342-4344)TCT>TTT	p.S1448F		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1448							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		AACAAGATTAGAAGGTTCATG	0.338													3	24					0	0	0.010729	0	0
PALLD	23022	broad.mit.edu	37	4	169589400	169589400	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:169589400G>A	uc011cjx.1	+	3	1179	c.968G>A	c.(967-969)GGA>GAA	p.G323E	PALLD_uc003iru.2_Missense_Mutation_p.G323E|PALLD_uc003irv.2_5'UTR	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	323	Ig-like C2-type 1.				cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		CACTGTGAGGGAGGGGACCTC	0.507									Pancreatic_Cancer_Familial_Clustering_of				36	39					0	0	0.004878	0	0
PALLD	23022	broad.mit.edu	37	4	169630191	169630191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:169630191C>T	uc011cjx.1	+	9	1725	c.1514C>T	c.(1513-1515)ACC>ATC	p.T505I	PALLD_uc003iru.2_Missense_Mutation_p.T505I|PALLD_uc003irv.2_Missense_Mutation_p.T123I	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	505	Ig-like C2-type 2.				cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		GAGATTTGCACCCTAGTTATC	0.443									Pancreatic_Cancer_Familial_Clustering_of				13	91					0	0	0.001855	0	0
ADAM29	11086	broad.mit.edu	37	4	175898197	175898197	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:175898197G>A	uc003iuc.2	+	5	2191	c.1521G>A	c.(1519-1521)AGG>AGA	p.R507R	ADAM29_uc003iud.2_Silent_p.R507R|ADAM29_uc010irr.2_Silent_p.R507R|ADAM29_uc011cki.1_Silent_p.R507R	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	507	Cys-rich.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		AGTGTAGGAGGATTTTTGGTG	0.448													50	40					0	0	0.014410	0	0
ADAM29	11086	broad.mit.edu	37	4	175898960	175898960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:175898960C>T	uc003iuc.2	+	5	2954	c.2284C>T	c.(2284-2286)CCT>TCT	p.P762S	ADAM29_uc003iud.2_Missense_Mutation_p.P762S|ADAM29_uc010irr.2_Missense_Mutation_p.P762S|ADAM29_uc011cki.1_Missense_Mutation_p.P762S	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	762	Cytoplasmic (Potential).|9 X 9 AA approximate repeats.|3.				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		GAGTCAACCTCCTGTGACACC	0.572													28	86					0	0	0.009535	0	0
TLR3	7098	broad.mit.edu	37	4	187004681	187004681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:187004681C>T	uc003iyq.2	+	4	1942	c.1841C>T	c.(1840-1842)TCA>TTA	p.S614L	TLR3_uc011ckz.1_Missense_Mutation_p.S337L|TLR3_uc003iyr.2_Missense_Mutation_p.S337L	NM_003265	NP_003256	O15455	TLR3_HUMAN	toll-like receptor 3 precursor	614	LRR 22.|Lumenal (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|defense response to bacterium|defense response to virus|detection of virus|hyperosmotic response|I-kappaB phosphorylation|inflammatory response|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of osteoclast differentiation|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|toll-like receptor 3 signaling pathway	endoplasmic reticulum membrane|endosome membrane|integral to plasma membrane	double-stranded RNA binding|transmembrane receptor activity			ovary(2)|prostate(1)|lung(1)|breast(1)	5		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(30;1.14e-05)|GBM - Glioblastoma multiforme(59;0.000107)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.16)		TCTCTAAAGTCATTGAACCTT	0.368													30	19					0	0	0.013726	0	0
FAT1	2195	broad.mit.edu	37	4	187549725	187549725	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:187549725G>A	uc003izf.2	-	8	4704	c.4516C>T	c.(4516-4518)CGT>TGT	p.R1506C		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	1506	Extracellular (Potential).|Cadherin 13.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						GGATCAAGACGAAATTTCTTG	0.463										HNSCC(5;0.00058)			16	20					0	0	0.003163	0	0
TRIML1	339976	broad.mit.edu	37	4	189061057	189061057	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr4:189061057C>T	uc003izm.1	+	1	460	c.345C>T	c.(343-345)TTC>TTT	p.F115F		NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	115					multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		GAAGCGCCTTCGTAGCCCAGA	0.612													10	23					0	0	0.008291	0	0
ZDHHC11	79844	broad.mit.edu	37	5	840733	840733	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:840733G>A	uc011cma.1	-	5	1045	c.661C>T	c.(661-663)CTC>TTC	p.L221F	ZDHHC11_uc003jbj.2_RNA|ZDHHC11_uc010itd.1_RNA|ZDHHC11_uc003jbk.2_Missense_Mutation_p.L8F	NM_024786	NP_079062	Q9H8X9	ZDH11_HUMAN	zinc finger, DHHC-type containing 11	221						integral to membrane	acyltransferase activity|zinc ion binding			skin(1)|pancreas(1)	2			Epithelial(17;0.000445)|all cancers(22;0.00176)|OV - Ovarian serous cystadenocarcinoma(19;0.00227)|Lung(60;0.0863)			AACAGGGGGAGGAACAGCAGC	0.592													89	241					0	0	0.014410	0	0
DNAH5	1767	broad.mit.edu	37	5	13824376	13824376	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:13824376C>T	uc003jfd.2	-	39	6553	c.6511G>A	c.(6511-6513)GCC>ACC	p.A2171T		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2171					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ATTGGATTGGCTCTTTTTGCT	0.443									Kartagener_syndrome				18	22					0	0	0.007413	0	0
TRIO	7204	broad.mit.edu	37	5	14280524	14280524	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:14280524C>T	uc003jff.2	+	3	332	c.326C>T	c.(325-327)TCC>TTC	p.S109F	TRIO_uc003jfg.2_RNA|TRIO_uc011cna.1_Missense_Mutation_p.S60F	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	109	CRAL-TRIO.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					AGACTCATTTCCTATCTAGCC	0.458													12	35					0	0	0.003163	0	0
Unknown	0	broad.mit.edu	37	5	33162691	33162691	+	RNA	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:33162691G>A	uc003jhx.2	+	1		c.426G>A								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		AGGAAGAAGAGATTTTAAACA	0.473													4	6					0	0	0.009096	0	0
AGXT2	64902	broad.mit.edu	37	5	35026524	35026524	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:35026524T>G	uc003jjf.2	-	8	940	c.861A>C	c.(859-861)GAA>GAC	p.E287D	AGXT2_uc003jje.1_5'Flank|AGXT2_uc011com.1_Missense_Mutation_p.E287D	NM_031900	NP_114106	Q9BYV1	AGT2_HUMAN	alanine-glyoxylate aminotransferase 2 precursor	287					glyoxylate metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	(R)-3-amino-2-methylpropionate-pyruvate transaminase activity|alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(3)|skin(1)	4	all_lung(31;4.52e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)	GBM - Glioblastoma multiforme(108;0.181)	Glycine(DB00145)|L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)	CTTGAATAGGTTCTGCGAAAA	0.358													9	30					0	0	0.013537	0	0
PRLR	5618	broad.mit.edu	37	5	35084649	35084649	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:35084649T>G	uc003jjm.2	-	5	826	c.296A>C	c.(295-297)TAC>TCC	p.Y99S	PRLR_uc003jjg.1_Missense_Mutation_p.Y99S|PRLR_uc003jjh.1_Missense_Mutation_p.Y99S|PRLR_uc003jji.1_Missense_Mutation_p.Y28S|PRLR_uc003jjj.1_Missense_Mutation_p.Y99S|PRLR_uc003jjk.1_Missense_Mutation_p.Y28S|PRLR_uc003jjl.3_Intron|PRLR_uc010iuw.1_Missense_Mutation_p.Y28S	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	99	Fibronectin type-III 1.|Extracellular (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	CATCATGATGTATGTCCTCCA	0.483													72	63					0	0	0.014410	0	0
UGT3A1	133688	broad.mit.edu	37	5	35965629	35965630	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:35965629_35965630CC>TT	uc003jjv.1	-	4	858_859	c.701_702GG>AA	c.(700-702)AGG>AAA	p.R234K	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Missense_Mutation_p.R234K|UGT3A1_uc011cor.1_Missense_Mutation_p.R200K|UGT3A1_uc003jjy.1_Missense_Mutation_p.R180K	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	234	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			ACAAAACTGGCCTAGAGCCTTC	0.436													34	29					0	0	0.004672	0	0
UGT3A1	133688	broad.mit.edu	37	5	35965889	35965889	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:35965889C>T	uc003jjv.1	-	4	599	c.442G>A	c.(442-444)GAT>AAT	p.D148N	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Missense_Mutation_p.D148N|UGT3A1_uc011cor.1_Missense_Mutation_p.D114N|UGT3A1_uc003jjy.1_Missense_Mutation_p.D94N	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	148	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GAACAGAAATCAAATGCTTCA	0.393													10	31					0	0	0.008291	0	0
FYB	2533	broad.mit.edu	37	5	39134964	39134964	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:39134964C>T	uc003jls.2	-	7	1735	c.1668G>A	c.(1666-1668)AGG>AGA	p.R556R	FYB_uc003jlt.2_Silent_p.R556R|FYB_uc003jlu.2_Silent_p.R556R|FYB_uc011cpl.1_Silent_p.R566R	NM_199335	NP_955367	O15117	FYB_HUMAN	FYN binding protein (FYB-120/130) isoform 2	556	SH3.				cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			ovary(2)	2	all_lung(31;0.000343)		Epithelial(62;0.235)			CACATGAACCCCTTGCTGTTC	0.433													10	34					0	0	0.013537	0	0
C6	729	broad.mit.edu	37	5	41186306	41186306	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:41186306G>A	uc003jmk.2	-	6	802	c.592C>T	c.(592-594)CAT>TAT	p.H198Y	C6_uc003jml.1_Missense_Mutation_p.H198Y	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	198	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				GCCAGAAAATGAAACCTAGAA	0.353													10	29					0	0	0.008291	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64492946	64492946	+	Silent	SNP	A	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:64492946A>G	uc003jtp.2	-	21	3422	c.2608T>C	c.(2608-2610)TTG>CTG	p.L870L	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	870	TSP type-1 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		TTGTCATCCAACCTTTTACAG	0.438													15	35					0	0	0.004007	0	0
PDE8B	8622	broad.mit.edu	37	5	76645262	76645262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:76645262G>A	uc003kfa.2	+	8	940	c.895G>A	c.(895-897)GAA>AAA	p.E299K	PDE8B_uc003kfb.2_Missense_Mutation_p.E279K|PDE8B_uc003kfc.2_Missense_Mutation_p.E299K|PDE8B_uc003kfd.2_Intron|PDE8B_uc003kfe.2_Intron	NM_003719	NP_003710	O95263	PDE8B_HUMAN	phosphodiesterase 8B isoform 1	299	PAS.				cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity				0		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		CCCAGCCTTCGAAAGGATGAT	0.502													62	161					0	0	0.014410	0	0
ANKRD32	84250	broad.mit.edu	37	5	94030836	94030836	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:94030836C>A	uc003kkr.3	+	21	3076	c.2996C>A	c.(2995-2997)ACC>AAC	p.T999N	ANKRD32_uc003kks.2_Missense_Mutation_p.T363N	NM_032290	NP_115666	Q9BQI6	ANR32_HUMAN	ankyrin repeat domain 32	999										ovary(2)	2		all_cancers(142;1.51e-09)|all_epithelial(76;4.68e-12)|all_lung(232;5.94e-05)|Ovarian(174;0.000953)|Lung NSC(167;0.00105)|Colorectal(57;0.122)|Lung SC(612;0.152)		all cancers(79;3.88e-18)		CATAAAGAAACCACCAGTGTT	0.348													8	40					2.74318e-10	3.05423e-10	0.006214	1	0
SLCO6A1	133482	broad.mit.edu	37	5	101748841	101748841	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:101748841C>T	uc003knn.2	-	9	1651	c.1479G>A	c.(1477-1479)GGG>GGA	p.G493G	SLCO6A1_uc003kno.2_Silent_p.G240G|SLCO6A1_uc003knp.2_Silent_p.G493G|SLCO6A1_uc003knq.2_Silent_p.G431G	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	493	Extracellular (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		TTCCCAACTTCCCTGTTCTGT	0.308													12	14					0	0	0.001855	0	0
KCNN2	3781	broad.mit.edu	37	5	113698918	113698918	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:113698918T>C	uc003kqo.2	+	1	903	c.446T>C	c.(445-447)ATG>ACG	p.M149T		NM_021614	NP_067627	Q9H2S1	KCNN2_HUMAN	small conductance calcium-activated potassium	149	Helical; Name=Segment S1; (Potential).					integral to membrane	calmodulin binding|small conductance calcium-activated potassium channel activity			ovary(2)	2		all_cancers(142;2.86e-05)|all_epithelial(76;9.33e-06)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Breast(839;0.159)|Lung NSC(810;0.174)|all_lung(232;0.206)		OV - Ovarian serous cystadenocarcinoma(64;1.89e-08)|Epithelial(69;2.04e-08)|all cancers(49;3.74e-06)|COAD - Colon adenocarcinoma(37;0.142)|Colorectal(14;0.195)		ATCGTGGTCATGGTCATCGAG	0.637													13	13					0	0	0.001855	0	0
SNCAIP	9627	broad.mit.edu	37	5	121761086	121761086	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:121761086G>A	uc003ksw.1	+	5	1248	c.1042G>A	c.(1042-1044)GAA>AAA	p.E348K	SNCAIP_uc011cwl.1_Intron|SNCAIP_uc010jct.2_Missense_Mutation_p.E348K|SNCAIP_uc003ksx.1_Missense_Mutation_p.E395K|SNCAIP_uc003ksy.1_Intron|SNCAIP_uc003ksz.1_Intron|SNCAIP_uc010jcu.2_Intron|SNCAIP_uc011cwm.1_Intron|SNCAIP_uc003kta.1_Intron|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.E42K|SNCAIP_uc010jcx.1_Intron	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	348					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		AATTCACGACGAAAATGGAAA	0.438													53	68					0	0	0.014410	0	0
SNCAIP	9627	broad.mit.edu	37	5	121767736	121767736	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:121767736G>A	uc003ksw.1	+	6	1461	c.1255G>A	c.(1255-1257)GAT>AAT	p.D419N	SNCAIP_uc011cwl.1_5'UTR|SNCAIP_uc010jct.2_Missense_Mutation_p.D419N|SNCAIP_uc003ksx.1_Missense_Mutation_p.D466N|SNCAIP_uc003ksy.1_Missense_Mutation_p.D53N|SNCAIP_uc003ksz.1_Missense_Mutation_p.D53N|SNCAIP_uc010jcu.2_Intron|SNCAIP_uc011cwm.1_Missense_Mutation_p.D53N|SNCAIP_uc003kta.1_Missense_Mutation_p.D51N|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.D113N|SNCAIP_uc010jcx.1_Missense_Mutation_p.D359N	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	419	ANK 3.				cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		TTGTTCTAAGGATTTTCCAAG	0.408													24	24					0	0	0.006320	0	0
KIF3A	11127	broad.mit.edu	37	5	132056301	132056301	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:132056301G>A	uc003kxo.2	-	5	770	c.616C>T	c.(616-618)CGT>TGT	p.R206C	KIF3A_uc003kxn.2_Missense_Mutation_p.R165C|KIF3A_uc011cxf.1_Missense_Mutation_p.R206C|KIF3A_uc003kxp.2_Missense_Mutation_p.R206C	NM_007054	NP_008985	Q9Y496	KIF3A_HUMAN	kinesin family member 3A	206	Kinesin-motor.				blood coagulation|organelle organization|plus-end-directed vesicle transport along microtubule	centrosome|cytosol|kinesin II complex|spindle microtubule	ATP binding|plus-end-directed microtubule motor activity|protein binding			pancreas(1)	1		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CTATACTTACGATTTTTGTGG	0.363													9	7					0	0	0.004482	0	0
AFF4	27125	broad.mit.edu	37	5	132234065	132234065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:132234065G>A	uc003kyd.2	-	10	1654	c.1246C>T	c.(1246-1248)CAT>TAT	p.H416Y	AFF4_uc011cxk.1_Missense_Mutation_p.H94Y|AFF4_uc003kye.1_Missense_Mutation_p.H416Y	NM_014423	NP_055238	Q9UHB7	AFF4_HUMAN	ALL1 fused gene from 5q31	416	Ser-rich.				transcription from RNA polymerase II promoter	mitochondrion|nucleolus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|kidney(2)|skin(1)	5		all_cancers(142;0.145)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TCACTATTATGGTGTGAAGGT	0.388													27	21					0	0	0.005443	0	0
DDX46	9879	broad.mit.edu	37	5	134117686	134117686	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:134117686G>A	uc003kzw.2	+	8	1123	c.955G>A	c.(955-957)GAA>AAA	p.E319K	DDX46_uc003kzv.1_RNA	NM_014829	NP_055644	Q7L014	DDX46_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	319					mRNA processing|RNA splicing	Cajal body|nuclear speck	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			AAAGCTTCTAGAACCAGTTGA	0.343													10	30					0	0	0.008291	0	0
FAM53C	51307	broad.mit.edu	37	5	137680705	137680705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:137680705C>T	uc003lcv.2	+	4	798	c.328C>T	c.(328-330)CCT>TCT	p.P110S	FAM53C_uc003lcw.2_Missense_Mutation_p.P110S|FAM53C_uc011cyq.1_Intron|FAM53C_uc011cyr.1_Intron	NM_001135647	NP_001129119	Q9NYF3	FA53C_HUMAN	hypothetical protein LOC51307	110										ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			TCCTGTGCCCCCTGCCCCTCC	0.662													29	50					0	0	0.006320	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475519	140475519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:140475519G>A	uc003lil.2	+	1	1283	c.1145G>A	c.(1144-1146)AGG>AAG	p.R382K	PCDHB2_uc003lim.1_Missense_Mutation_p.R43K	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	382	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GACAACGGAAGGATGGTGTGC	0.473													7	31					0	0	0.001984	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475983	140475983	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:140475983G>A	uc003lil.2	+	1	1747	c.1609G>A	c.(1609-1611)GAC>AAC	p.D537N	PCDHB2_uc003lim.1_Missense_Mutation_p.D198N	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	537	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGGCGCCGCAGACCGCGGCTC	0.687													17	53					0	0	0.006122	0	0
PCDHB10	56126	broad.mit.edu	37	5	140574090	140574090	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:140574090C>T	uc003lix.2	+	1	2139	c.1965C>T	c.(1963-1965)ACC>ACT	p.T655T		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	655	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCTCGGCCACCGCCACGCTGC	0.711													30	8					0	0	0.006320	0	0
PCDHB11	56125	broad.mit.edu	37	5	140581450	140581450	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:140581450C>T	uc003liy.2	+	1	2103	c.2103C>T	c.(2101-2103)TTC>TTT	p.F701F	PCDHB11_uc011daj.1_Silent_p.F336F	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	701	Helical; (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTTCGCTCTTCCTCTTCTCGG	0.692													47	88					0	0	0.014410	0	0
PCDHB11	56125	broad.mit.edu	37	5	140581661	140581661	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:140581661C>T	uc003liy.2	+	1	2314	c.2314C>T	c.(2314-2316)CCT>TCT	p.P772S	PCDHB11_uc011daj.1_Missense_Mutation_p.P407S	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	772	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACCGGTTATCCCTAATATCCA	0.433													17	32					0	0	0.004990	0	0
PCDHB12	56124	broad.mit.edu	37	5	140589325	140589325	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:140589325C>T	uc003liz.2	+	1	1035	c.846C>T	c.(844-846)TCC>TCT	p.S282S	PCDHB12_uc011dak.1_Intron	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	282	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATACCTTTTCCCATGCCTCAG	0.408													27	89					0	0	0.003954	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140723999	140723999	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:140723999C>T	uc003ljm.1	+	1	399	c.399C>T	c.(397-399)TTC>TTT	p.F133F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGA3_uc011dap.1_Silent_p.F133F	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	133	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCCTAATTTCCCAACAGAGG	0.338													7	30					0	0	0.003080	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140731541	140731541	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:140731541G>A	uc003ljo.1	+	1	1714	c.1714G>A	c.(1714-1716)GAT>AAT	p.D572N	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Missense_Mutation_p.D572N	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	572	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCCCTCTTCGATATGGTGCC	0.662													12	32					0	0	0.012319	0	0
PCDHGB6	56100	broad.mit.edu	37	5	140788198	140788198	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:140788198C>T	uc003lkj.1	+	1	429	c.429C>T	c.(427-429)TTC>TTT	p.F143F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lki.1_Silent_p.F143F	NM_018926	NP_061749	Q9Y5F9	PCDGI_HUMAN	protocadherin gamma subfamily B, 6 isoform 1	143	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAGAAATTTTCGAATCTGCAT	0.348													8	33					0	0	0.006214	0	0
PCDHGA11	56105	broad.mit.edu	37	5	140803070	140803070	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:140803070C>T	uc003lkq.1	+	1	2534	c.2276C>T	c.(2275-2277)TCT>TTT	p.S759F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lko.1_Missense_Mutation_p.S759F|PCDHGA11_uc003lkp.1_Intron|PCDHGB8P_uc011daz.1_5'Flank	NM_018914	NP_061737	Q9Y5H2	PCDGB_HUMAN	protocadherin gamma subfamily A, 11 isoform 1	759	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACGAGGTCTCTCTCATTGCG	0.567													26	28					0	0	0.006320	0	0
FAT2	2196	broad.mit.edu	37	5	150922725	150922725	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:150922725G>A	uc003lue.3	-	9	7976	c.7963C>T	c.(7963-7965)CAG>TAG	p.Q2655*	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	2655	Cadherin 23.|Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCAAGGGTCTGATTTTCCAAT	0.473													38	31					0	0	0.006230	0	0
ODZ2	57451	broad.mit.edu	37	5	167489189	167489189	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:167489189C>T	uc010jjd.2	+	7	1434	c.1434C>T	c.(1432-1434)TTC>TTT	p.F478F	ODZ2_uc003lzq.2_Silent_p.F357F|ODZ2_uc003lzr.3_Silent_p.F246F	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		AGCCCCAGTTCTTAAAGTTCA	0.488													12	46					0	0	0.010729	0	0
ODZ2	57451	broad.mit.edu	37	5	167551955	167551955	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:167551955G>A	uc010jjd.2	+	11	2109	c.2109G>A	c.(2107-2109)AGG>AGA	p.R703R	ODZ2_uc003lzr.3_Silent_p.R471R|ODZ2_uc003lzt.3_Silent_p.R67R|ODZ2_uc010jje.2_5'UTR|uc003lzs.1_Intron	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		AGCTGGCGAGGGTCCAGTGCC	0.617													7	13					0	0	0.001984	0	0
FOXI1	2299	broad.mit.edu	37	5	169533105	169533105	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:169533105C>T	uc003mai.3	+	1	189	c.144C>T	c.(142-144)TCC>TCT	p.S48S	FOXI1_uc003maj.3_Silent_p.S48S	NM_012188	NP_036320	Q12951	FOXI1_HUMAN	forkhead box I1 isoform a	48	Pro-rich.				epidermal cell fate specification|otic placode formation|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0267)|all_lung(126;0.04)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGCGGCCCTCCTTCGAGGGGG	0.687									Pendred_syndrome				18	13					0	0	0.008871	0	0
LMAN2	10960	broad.mit.edu	37	5	176764160	176764160	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:176764160G>A	uc003mge.2	-	6	1004	c.767C>T	c.(766-768)TCC>TTC	p.S256F	LMAN2_uc003mgd.2_Missense_Mutation_p.S256F	NM_006816	NP_006807	Q12907	LMAN2_HUMAN	lectin, mannose-binding 2 precursor	256	Lumenal (Potential).|L-type lectin-like.				protein transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	metal ion binding|sugar binding				0	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGTGCCGGCGGAGGCCCCGAA	0.642													15	19					0	0	0.006122	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178555107	178555107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr5:178555107C>T	uc003mjw.2	-	17	2470	c.2470G>A	c.(2470-2472)GGA>AGA	p.G824R		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	824	Spacer.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		CGGGTGTCTCCCACCGGGATG	0.577													20	21					0	0	0.010504	0	0
C6orf145	221749	broad.mit.edu	37	6	3727859	3727860	+	Missense_Mutation	DNP	GG	AA	AA	rs138093421	byFrequency	TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:3727859_3727860GG>AA	uc003mvt.2	-	4	984_985	c.503_504CC>TT	c.(502-504)ACC>ATT	p.T168I		NM_183373	NP_899229	Q5TGL8	CF145_HUMAN	hypothetical protein LOC221749	168					cell communication		phosphatidylinositol binding			breast(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				CTATTGTTTCGGTATTTGCTAA	0.436													28	43					0	0	0.004672	0	0
ATXN1	6310	broad.mit.edu	37	6	16327065	16327065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:16327065G>A	uc003nbt.2	-	8	2448	c.1477C>T	c.(1477-1479)CCG>TCG	p.P493S	ATXN1_uc010jpi.2_Missense_Mutation_p.P493S|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	493					cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				CTGCCGACCGGGATGAGCAGG	0.667													92	123					0	0	0.014410	0	0
BTN2A2	10385	broad.mit.edu	37	6	26390244	26390244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:26390244C>T	uc003nhq.2	+	5	822	c.736C>T	c.(736-738)CCC>TCC	p.P246S	BTN2A2_uc011dkf.1_Missense_Mutation_p.P130S|BTN2A2_uc011dkg.1_Missense_Mutation_p.P152S|BTN2A2_uc003nhr.2_Missense_Mutation_p.P130S|BTN2A2_uc011dkh.1_Missense_Mutation_p.P36S|BTN2A2_uc003nhs.2_Missense_Mutation_p.P246S|BTN2A2_uc003nht.2_Missense_Mutation_p.P246S|BTN2A2_uc011dki.1_5'UTR	NM_006995	NP_008926	Q8WVV5	BT2A2_HUMAN	butyrophilin, subfamily 2, member A2 isoform a	246	Extracellular (Potential).				negative regulation of activated T cell proliferation|negative regulation of cellular metabolic process|negative regulation of cytokine secretion	integral to membrane					0						ATCCTTTATGCCCAGCGCATC	0.493													51	102					0	0	0.014410	0	0
ZNF165	7718	broad.mit.edu	37	6	28056993	28056993	+	Silent	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:28056993T>C	uc003nkg.2	+	5	2287	c.1203T>C	c.(1201-1203)GGT>GGC	p.G401G	ZNF165_uc003nkh.2_Silent_p.G401G|ZNF165_uc003nki.3_Silent_p.G401G|ZSCAN12P1_uc003nkj.3_5'Flank	NM_003447	NP_003438	P49910	ZN165_HUMAN	zinc finger protein 165	401	C2H2-type 4.				viral reproduction	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GACCCTTTGGTTGCAAAGAAT	0.448													39	69					0	0	0.007835	0	0
KIAA1949	170954	broad.mit.edu	37	6	30653724	30653724	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:30653724G>A	uc003nra.2	-	2	303	c.72C>T	c.(70-72)GGC>GGT	p.G24G	KIAA1949_uc003nrb.3_Silent_p.G24G	NM_001134870	NP_001128342	Q6NYC8	PHTNS_HUMAN	phostensin	24						cytoplasm|cytoskeleton	actin binding				0						CTTTCTCTCGGCCTCGAACGG	0.677													90	105					0	0	0.014410	0	0
NFKBIL1	4795	broad.mit.edu	37	6	31525547	31525547	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:31525547C>T	uc003nub.2	+	3	596	c.477C>T	c.(475-477)GCC>GCT	p.A159A	NFKBIL1_uc011dnr.1_Silent_p.A136A|NFKBIL1_uc011dns.1_Silent_p.A136A|NFKBIL1_uc011dnt.1_RNA|NFKBIL1_uc003nuc.2_Silent_p.A159A	NM_005007	NP_004998	Q9UBC1	IKBL1_HUMAN	nuclear factor of kappa light polypeptide gene	159					cytoplasmic sequestering of transcription factor		protein binding				0						AAGATGATGCCTCCAAGGAGC	0.562													28	52					0	0	0.008361	0	0
EHMT2	10919	broad.mit.edu	37	6	31855893	31855893	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:31855893G>A	uc003nxz.1	-	13	1680	c.1670C>T	c.(1669-1671)CCG>CTG	p.P557L	EHMT2_uc003nxx.1_5'Flank|EHMT2_uc003nxy.1_Missense_Mutation_p.P348L|EHMT2_uc011don.1_Missense_Mutation_p.P580L|EHMT2_uc003nya.1_Missense_Mutation_p.P523L	NM_006709	NP_006700	Q96KQ7	EHMT2_HUMAN	euchromatic histone-lysine N-methyltransferase 2	557					DNA methylation|peptidyl-lysine dimethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			ovary(1)	1						AGTGCCGGCCGGTGGGGTCAC	0.642													131	149					0	0	0.014410	0	0
RING1	6015	broad.mit.edu	37	6	33177794	33177794	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:33177794G>A	uc003odk.2	+	4	536	c.342G>A	c.(340-342)CGG>CGA	p.R114R	RING1_uc011dqx.1_Silent_p.R114R|RING1_uc003odl.2_Silent_p.R85R	NM_002931	NP_002922	Q06587	RING1_HUMAN	ring finger protein 1	114	Necessary for transcriptional repression (By similarity).				histone H2A monoubiquitination|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear speck|PcG protein complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						ATCCTAGCCGGGAGGAATACG	0.572													18	18					0	0	0.004990	0	0
C6orf222	389384	broad.mit.edu	37	6	36287321	36287322	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:36287321_36287322CC>TT	uc003oly.2	-	11	1912_1913	c.1734_1735GG>AA	c.(1732-1737)CTGGTA>CTAATA	p.V579I		NM_001010903	NP_001010903	P0C671	CF222_HUMAN	hypothetical protein LOC389384	579										skin(2)|ovary(1)|breast(1)	4						AGGGTGGCTACCAGCTTGCTGA	0.52													40	53					0	0	0.004672	0	0
BTBD9	114781	broad.mit.edu	37	6	38560427	38560427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:38560427G>A	uc003ooa.3	-	5	1315	c.739C>T	c.(739-741)CCT>TCT	p.P247S	BTBD9_uc003ony.3_Missense_Mutation_p.P179S|BTBD9_uc010jwv.2_Missense_Mutation_p.P179S|BTBD9_uc010jww.2_RNA|BTBD9_uc010jwx.2_Missense_Mutation_p.P247S	NM_052893	NP_443125	Q96Q07	BTBD9_HUMAN	BTB (POZ) domain containing 9 isoform a	247					cell adhesion						0						ATGGCATCAGGAGACAGCAGT	0.478													12	66					0	0	0.001855	0	0
DNAH8	1769	broad.mit.edu	37	6	38851743	38851743	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:38851743A>T	uc003ooe.1	+	54	8177	c.7577A>T	c.(7576-7578)AAT>ATT	p.N2526I		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GATGATATTAATATGCCTGTG	0.333													26	30					0	0	0.004656	0	0
DNAH8	1769	broad.mit.edu	37	6	38906668	38906668	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:38906668G>A	uc003ooe.1	+	77	11860	c.11260G>A	c.(11260-11262)GAA>AAA	p.E3754K	DNAH8_uc003oog.1_Missense_Mutation_p.E203K|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AGGCCTATACGAAAACCACAA	0.373													10	42					0	0	0.010729	0	0
LRFN2	57497	broad.mit.edu	37	6	40360426	40360426	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:40360426G>A	uc003oph.1	-	3	2091	c.1626C>T	c.(1624-1626)ATC>ATT	p.I542I		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	542	Helical; (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					GCGTGGCCACGATGATGCCCC	0.612													15	24					0	0	0.003163	0	0
NCR2	9436	broad.mit.edu	37	6	41318535	41318535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:41318535G>A	uc003oqh.2	+	5	851	c.764G>A	c.(763-765)AGA>AAA	p.R255K	NCR2_uc003oqi.2_3'UTR|NCR2_uc003oqj.2_3'UTR	NM_004828	NP_004819	O95944	NCTR2_HUMAN	natural cytotoxicity triggering receptor 2	255	Cytoplasmic (Potential).				cellular defense response	integral to plasma membrane	transmembrane receptor activity			ovary(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					cctgtagagagagaaatatta	0.144													16	27					0	0	0.003163	0	0
ZNF318	24149	broad.mit.edu	37	6	43325409	43325409	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:43325409G>A	uc003oux.2	-	3	721	c.643C>T	c.(643-645)CCC>TCC	p.P215S	ZNF318_uc003ouw.2_RNA	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	215					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			CCCAAGAAGGGACTGAGAGGC	0.493													64	79					0	0	0.014410	0	0
ABCC10	89845	broad.mit.edu	37	6	43400499	43400499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:43400499C>T	uc003ouy.1	+	3	996	c.781C>T	c.(781-783)CGT>TGT	p.R261C	ABCC10_uc003ouz.1_Missense_Mutation_p.R218C|ABCC10_uc010jyo.1_5'Flank	NM_033450	NP_258261	Q5T3U5	MRP7_HUMAN	ATP-binding cassette, sub-family C, member 10	261						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(6)|central_nervous_system(1)	7	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			CTACCTGGCTCGTGTCTTCCA	0.652													23	26					0	0	0.002780	0	0
HSP90AB1	3326	broad.mit.edu	37	6	44217799	44217799	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:44217799A>G	uc003oxa.1	+	5	640	c.556A>G	c.(556-558)AAA>GAA	p.K186E	HSP90AB1_uc011dvr.1_Missense_Mutation_p.K176E|HSP90AB1_uc003oxb.1_Missense_Mutation_p.K186E|HSP90AB1_uc011dvs.1_Missense_Mutation_p.K6E|HSP90AB1_uc003oxc.1_5'UTR	NM_007355	NP_031381	P08238	HS90B_HUMAN	heat shock 90kDa protein 1, beta	186					axon guidance|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of nitric oxide biosynthetic process|protein folding|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to unfolded protein	cytosol|melanosome	ATP binding|nitric-oxide synthase regulator activity|TPR domain binding|unfolded protein binding			lung(3)|breast(1)	4	all_cancers(18;1.7e-05)|all_lung(25;0.00747)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			CCTCCATCTTAAAGAAGATCA	0.443													22	46					0	0	0.008361	0	0
GPR116	221395	broad.mit.edu	37	6	46847774	46847774	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:46847774C>T	uc003oyo.3	-	9	1106	c.817G>A	c.(817-819)GAA>AAA	p.E273K	GPR116_uc003oyp.3_Intron|GPR116_uc003oyq.3_Missense_Mutation_p.E273K|GPR116_uc010jzi.1_5'UTR|GPR116_uc003oyr.2_Missense_Mutation_p.E273K	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	273	Ig-like 1.|SEA.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			AAATTGCTTTCATCTGGAAAC	0.423													9	32					0	0	0.006214	0	0
FAM83B	222584	broad.mit.edu	37	6	54806270	54806270	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:54806270C>T	uc003pck.2	+	5	2617	c.2501C>T	c.(2500-2502)TCC>TTC	p.S834F		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	834	Poly-Ser.									ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					AAGCATTCTTCCTCATCGAAT	0.378													7	31					0	0	0.001984	0	0
FAM83B	222584	broad.mit.edu	37	6	54806429	54806429	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:54806429C>A	uc003pck.2	+	5	2776	c.2660C>A	c.(2659-2661)CCA>CAA	p.P887Q		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	887										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					GCCTCTGCCCCAAGATTTAAC	0.448													35	33					3.33393e-15	3.72808e-15	0.004878	1	0
HCRTR2	3062	broad.mit.edu	37	6	55039580	55039580	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:55039580C>T	uc003pcl.2	+	1	510	c.195C>T	c.(193-195)TTC>TTT	p.F65F	HCRTR2_uc010jzv.2_RNA|HCRTR2_uc010jzu.1_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	65	Helical; Name=1; (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			TCATCGTGTTCGTCGTGGCTC	0.597													41	40					0	0	0.011902	0	0
BAI3	577	broad.mit.edu	37	6	70042883	70042883	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:70042883G>A	uc003pev.3	+	24	3619	c.3171G>A	c.(3169-3171)AAG>AAA	p.K1057K	BAI3_uc010kak.2_Silent_p.K1057K|BAI3_uc011dxx.1_Silent_p.K263K|BAI3_uc003pex.1_Silent_p.K187K	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1057	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				TAGATAAAAAGCTCAAACACA	0.383													13	18					0	0	0.013537	0	0
IMPG1	3617	broad.mit.edu	37	6	76712689	76712689	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:76712689G>A	uc003pik.1	-	12	1367	c.1237C>T	c.(1237-1239)CCT>TCT	p.P413S		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	413					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				TCAACAGGAGGAAGTTCTGGA	0.423													24	31					0	0	0.005443	0	0
CNR1	1268	broad.mit.edu	37	6	88853935	88853935	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:88853935G>A	uc011dzq.1	-	2	4622	c.1059C>T	c.(1057-1059)ATC>ATT	p.I353I	CNR1_uc010kbz.2_Silent_p.I353I|CNR1_uc011dzr.1_Silent_p.I353I|CNR1_uc011dzs.1_Silent_p.I353I|CNR1_uc003pmq.3_Silent_p.I353I|CNR1_uc011dzt.1_Silent_p.I353I|CNR1_uc010kca.2_Silent_p.I320I	NM_001160260	NP_001153732	P21554	CNR1_HUMAN	cannabinoid receptor 1 isoform a	353	Helical; Name=6; (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding			skin(2)	2		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	CCCAGCAGATGATCAACACCA	0.527													26	111					0	0	0.003330	0	0
MDN1	23195	broad.mit.edu	37	6	90405637	90405637	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:90405637G>A	uc003pnn.1	-	61	9574	c.9458C>T	c.(9457-9459)TCC>TTC	p.S3153F		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	3153					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		CTGCCGCCGGGACTCTGGGAG	0.617													52	79					0	0	0.014410	0	0
MDN1	23195	broad.mit.edu	37	6	90424464	90424464	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:90424464G>A	uc003pnn.1	-	46	6983	c.6867C>T	c.(6865-6867)TTC>TTT	p.F2289F		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	2289					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		CCATCGAGAGGAAAAGTCTAG	0.428													13	43					0	0	0.001855	0	0
ATG5	9474	broad.mit.edu	37	6	106740973	106740973	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:106740973G>A	uc003prf.2	-	4	598	c.245C>T	c.(244-246)CCA>CTA	p.P82L	ATG5_uc010kdb.2_Missense_Mutation_p.P82L|ATG5_uc003prg.2_Missense_Mutation_p.P4L|ATG5_uc010kdc.2_Intron	NM_004849	NP_004840	Q9H1Y0	ATG5_HUMAN	APG5 autophagy 5-like	82					apoptosis|autophagic vacuole assembly|negative regulation of type I interferon production|post-translational protein modification	autophagic vacuole|pre-autophagosomal structure membrane	protein binding			large_intestine(1)	1	Breast(9;0.0296)	all_cancers(87;0.000301)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.0612)|Lung NSC(302;0.216)	BRCA - Breast invasive adenocarcinoma(8;0.00802)	OV - Ovarian serous cystadenocarcinoma(136;0.128)|Epithelial(106;0.159)|all cancers(137;0.18)		CAAACCAATTGGATAATGCCT	0.303													42	12					0	0	0.014410	0	0
FIG4	9896	broad.mit.edu	37	6	110098168	110098168	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:110098168C>T	uc003ptt.2	+	16	2009	c.1794C>T	c.(1792-1794)TTC>TTT	p.F598F	FIG4_uc011eau.1_Silent_p.F321F	NM_014845	NP_055660	Q92562	FIG4_HUMAN	Sac domain-containing inositol phosphatase 3	598				F -> S (in Ref. 2; BAD96452).	cell death	endosome membrane	protein binding			ovary(1)	1		all_cancers(87;8.63e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.000124)|all_lung(197;0.0187)|Colorectal(196;0.0492)|Lung SC(18;0.0548)		OV - Ovarian serous cystadenocarcinoma(136;0.0355)|Epithelial(106;0.038)|all cancers(137;0.0425)|BRCA - Breast invasive adenocarcinoma(108;0.079)		TGGGAGTTTTCCATCCCACTG	0.363													29	7					0	0	0.006320	0	0
LAMA2	3908	broad.mit.edu	37	6	129371187	129371187	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:129371187G>A	uc003qbn.2	+	2	342	c.237G>A	c.(235-237)AGG>AGA	p.R79R	LAMA2_uc003qbo.2_Silent_p.R79R	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	79	Laminin N-terminal.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		AGCCTGTGAGGAACCCGCAGT	0.453													24	4					0	0	0.004656	0	0
SLC2A12	154091	broad.mit.edu	37	6	134350739	134350739	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:134350739C>T	uc003qem.1	-	2	395	c.224G>A	c.(223-225)AGC>AAC	p.S75N		NM_145176	NP_660159	Q8TD20	GTR12_HUMAN	solute carrier family 2 (facilitated glucose	75	Extracellular (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity			ovary(1)	1	Breast(56;0.214)|Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0101)|GBM - Glioblastoma multiforme(68;0.0123)		CTCATGGCAGCTCAGGGCTAA	0.527													34	5					0	0	0.012213	0	0
PDE7B	27115	broad.mit.edu	37	6	136476825	136476825	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:136476825G>A	uc003qgp.2	+	8	943	c.640G>A	c.(640-642)GAT>AAT	p.D214N	uc003qgq.1_Intron|PDE7B_uc003qgr.2_Missense_Mutation_p.D266N	NM_018945	NP_061818	Q9NP56	PDE7B_HUMAN	phosphodiesterase 7B	214	Catalytic (By similarity).	Divalent metal cation 1 (By similarity).|Divalent metal cation 2 (By similarity).			signal transduction|synaptic transmission	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(1)	1	Colorectal(23;0.24)			OV - Ovarian serous cystadenocarcinoma(155;0.0136)|GBM - Glioblastoma multiforme(68;0.0147)	Dyphylline(DB00651)|Ketotifen(DB00920)	AGCAGCACACGATGTGGACCA	0.488													20	3					0	0	0.012319	0	0
SLC22A2	6582	broad.mit.edu	37	6	160662605	160662605	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:160662605G>A	uc003qtf.2	-	9	1572	c.1402C>T	c.(1402-1404)CAC>TAC	p.H468Y	SLC22A2_uc003qte.1_Missense_Mutation_p.H468Y	NM_003058	NP_003049	O15244	S22A2_HUMAN	solute carrier family 22 member 2	468	Helical; (Potential).				body fluid secretion|neurotransmitter biosynthetic process|neurotransmitter secretion	integral to plasma membrane|membrane fraction	neurotransmitter transporter activity|organic cation transmembrane transporter activity			breast(1)|skin(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.28e-17)|BRCA - Breast invasive adenocarcinoma(81;6.29e-06)		GAACAGATGTGGACGCCAAGA	0.468													34	6					0	0	0.003755	0	0
PLG	5340	broad.mit.edu	37	6	161160199	161160199	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:161160199G>A	uc003qtm.3	+	16	2040	c.1977G>A	c.(1975-1977)TTG>TTA	p.L659L		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	659	Peptidase S1.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	GGCTGTTCTTGGAGCCCACAC	0.493													50	15					0	0	0.014410	0	0
MAP3K4	4216	broad.mit.edu	37	6	161523006	161523007	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:161523006_161523007CC>TT	uc003qtn.2	+	18	3899_3900	c.3757_3758CC>TT	c.(3757-3759)CCC>TTC	p.P1253F	MAP3K4_uc010kkc.1_Missense_Mutation_p.P1249F|MAP3K4_uc003qto.2_Missense_Mutation_p.P1203F|MAP3K4_uc011efz.1_RNA|MAP3K4_uc011ega.1_Missense_Mutation_p.P706F|MAP3K4_uc003qtp.2_Missense_Mutation_p.P189F|MAP3K4_uc003qtq.2_5'UTR	NM_005922	NP_005913	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	1253					activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			ovary(3)|lung(3)|skin(2)|stomach(1)	9		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		TCACTCAAGCCCCACGGAGGAG	0.436													18	7					0	0	0.004672	0	0
UNC93A	54346	broad.mit.edu	37	6	167717489	167717489	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:167717489G>T	uc003qvq.2	+	5	883	c.708G>T	c.(706-708)AAG>AAT	p.K236N	UNC93A_uc003qvr.2_Missense_Mutation_p.K194N	NM_018974	NP_061847	Q86WB7	UN93A_HUMAN	unc-93 homolog A isoform 1	236						integral to membrane|plasma membrane					0		Breast(66;7.62e-05)|Ovarian(120;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		aaggagagaagaaatcagtac	0.294													19	35					1.67942e-08	1.86582e-08	0.006122	1	0
EIF3B	8662	broad.mit.edu	37	7	2418375	2418375	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:2418375C>T	uc003slx.2	+	16	2289	c.2206C>T	c.(2206-2208)CGT>TGT	p.R736C	EIF3B_uc003sly.2_Missense_Mutation_p.R736C|EIF3B_uc003sma.2_Missense_Mutation_p.R464C|EIF3B_uc003smb.2_RNA	NM_003751	NP_003742	P55884	EIF3B_HUMAN	eukaryotic translation initiation factor 3,	736					regulation of translational initiation	cytosol|eukaryotic translation initiation factor 3 complex	nucleotide binding|protein complex scaffold|translation initiation factor activity				0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0833)|OV - Ovarian serous cystadenocarcinoma(56;7.76e-14)		ACAGAAGGATCGTTTGAGTCA	0.458													18	13					0	0	0.006122	0	0
CARD11	84433	broad.mit.edu	37	7	2979485	2979485	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:2979485C>T	uc003smv.2	-	6	1166	c.762G>A	c.(760-762)AAG>AAA	p.K254K		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	254	Potential.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		CAATGTCATTCTTCAGTTTTA	0.473			Mis		DLBCL								92	77					0	0	0.014410	0	0
THSD7A	221981	broad.mit.edu	37	7	11418702	11418702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:11418702C>T	uc003ssf.3	-	25	5048	c.4796G>A	c.(4795-4797)GGG>GAG	p.G1599E	uc003ssb.2_Intron|THSD7A_uc003ssd.3_Missense_Mutation_p.G103E	NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	1599	Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		TTCACCTGGCCCAAATGGCTG	0.453										HNSCC(18;0.044)			27	31					0	0	0.004656	0	0
ETV1	2115	broad.mit.edu	37	7	13935631	13935631	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:13935631G>A	uc011jxq.1	-	14	2033	c.1294C>T	c.(1294-1296)CCA>TCA	p.P432S	ETV1_uc011jxn.1_Missense_Mutation_p.P392S|ETV1_uc011jxo.1_Missense_Mutation_p.P329S|ETV1_uc011jxp.1_Missense_Mutation_p.P374S|ETV1_uc003ssw.3_Missense_Mutation_p.P409S|ETV1_uc003ssx.2_RNA|ETV1_uc011jxr.1_Missense_Mutation_p.P414S|ETV1_uc011jxs.1_Missense_Mutation_p.P414S	NM_004956	NP_004947	P50549	ETV1_HUMAN	ets variant gene 1 isoform a	432					transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		TMPRSS2/ETV1(24)|EWSR1/ETV1(7)	prostate(24)|soft_tissue(4)|bone(3)|lung(2)|central_nervous_system(1)|ovary(1)	35						TTCAGCAGTGGACGCTGATTA	0.498			T	EWSR1|TMPRSS2|SLC45A3|C15orf21|HNRNPA2B1. ACSL3	Ewing sarcoma|prostate								25	20					0	0	0.003330	0	0
DNAH11	8701	broad.mit.edu	37	7	21856294	21856294	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:21856294G>A	uc003svc.2	+	65	10594	c.10563G>A	c.(10561-10563)CTG>CTA	p.L3521L		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3521	AAA 5 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GAATGGACCTGAAAGTCACAC	0.448									Kartagener_syndrome				28	21					0	0	0.009535	0	0
RAPGEF5	9771	broad.mit.edu	37	7	22347999	22347999	+	Silent	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:22347999T>C	uc003svg.2	-	5	493	c.180A>G	c.(178-180)CAA>CAG	p.Q60Q		NM_012294	NP_036426	Q92565	RPGF5_HUMAN	Rap guanine nucleotide exchange factor (GEF) 5	Error:Variant_position_missing_in_Q92565_after_alignment					nervous system development|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	nucleus	GTP-dependent protein binding|Rap guanyl-nucleotide exchange factor activity			ovary(1)	1						GAGGCACAAGTTGCAGTAAAA	0.373													4	11					0	0	0.001168	0	0
SKAP2	8935	broad.mit.edu	37	7	26724414	26724414	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:26724414C>T	uc003syc.2	-	11	1221	c.928G>A	c.(928-930)GGA>AGA	p.G310R	SKAP2_uc011jzi.1_Missense_Mutation_p.G138R|SKAP2_uc011jzj.1_Missense_Mutation_p.G295R	NM_003930	NP_003921	O75563	SKAP2_HUMAN	src kinase associated phosphoprotein 2	310	SH3.				B cell activation|cell junction assembly|protein complex assembly|signal transduction	cytosol|plasma membrane	SH3/SH2 adaptor activity			pancreas(1)	1						GAAAAAGCTCCAGTACAATCC	0.378													9	36					0	0	0.008291	0	0
GHRHR	2692	broad.mit.edu	37	7	31014610	31014610	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:31014610C>T	uc003tbx.2	+	9	885	c.837C>T	c.(835-837)TCC>TCT	p.S279S	GHRHR_uc003tbw.1_Silent_p.S279S|GHRHR_uc003tby.2_Silent_p.S215S|GHRHR_uc003tbz.2_Missense_Mutation_p.P46S	NM_000823	NP_000814	Q02643	GHRHR_HUMAN	growth hormone releasing hormone receptor	279	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation|positive regulation of growth hormone secretion|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of multicellular organism growth|response to estrogen stimulus|response to glucocorticoid stimulus	cell surface|integral to membrane|nuclear inner membrane|nuclear matrix|nuclear outer membrane|plasma membrane|stored secretory granule	growth factor binding|growth hormone-releasing hormone receptor activity|peptide hormone binding			ovary(2)|lung(1)|breast(1)|large_intestine(1)	5					Sermorelin(DB00010)	ACGACACCTCCCCCTACTGGT	0.587											OREG0017943	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	36	95					0	0	0.010771	0	0
ELMO1	9844	broad.mit.edu	37	7	37272719	37272719	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:37272719G>A	uc003tfk.1	-	8	837	c.530C>T	c.(529-531)TCG>TTG	p.S177L	ELMO1_uc011kbc.1_Missense_Mutation_p.S81L|ELMO1_uc010kxg.1_Missense_Mutation_p.S177L	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	177					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						GAACGCCACCGAAAATGTATC	0.463													23	49					0	0	0.006320	0	0
Unknown	0	broad.mit.edu	37	7	38370226	38370226	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:38370226C>T	uc010kxj.1	-	2	208	c.72G>A	c.(70-72)GGG>GGA	p.G24G	uc010kxk.1_RNA					SubName: Full=Putative uncharacterized protein ENSP00000374866;																		ACTTTGTTCTCCCTTCCAAGT	0.438													33	43					0	0	0.004878	0	0
ZMIZ2	83637	broad.mit.edu	37	7	44806175	44806175	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:44806175G>A	uc003tlr.2	+	18	2691	c.2568G>A	c.(2566-2568)ACG>ACA	p.T856T	ZMIZ2_uc003tlq.2_Silent_p.T798T|ZMIZ2_uc003tls.2_Silent_p.T830T|ZMIZ2_uc003tlt.2_Silent_p.T479T|ZMIZ2_uc010kyj.2_Silent_p.T378T|ZMIZ2_uc003tlu.2_Silent_p.T137T|ZMIZ2_uc010kyk.1_5'Flank	NM_031449	NP_113637	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2 isoform 1	856	Pro-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			ovary(2)|large_intestine(2)|breast(1)	5						TAGGACCTACGGGTGAACTGG	0.662													42	50					0	0	0.009718	0	0
PKD1L1	168507	broad.mit.edu	37	7	47913522	47913522	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:47913522C>T	uc003tny.1	-	24	3871	c.3871G>A	c.(3871-3873)GGA>AGA	p.G1291R		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1291	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						CAGTCATTTCCATGGTAGCGG	0.517													8	62					0	0	0.004482	0	0
HUS1	3364	broad.mit.edu	37	7	48018031	48018031	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:48018031T>A	uc003tod.1	-	3	470	c.340A>T	c.(340-342)ACG>TCG	p.T114S	HUS1_uc003toe.1_Missense_Mutation_p.T114S|HUS1_uc011kce.1_RNA	NM_004507	NP_004498	O60921	HUS1_HUMAN	HUS1 checkpoint protein	114					DNA damage checkpoint|DNA replication	Golgi apparatus|nucleolus|nucleoplasm	protein binding			ovary(2)|lung(2)|kidney(1)	5		Breast(660;0.00139)				ACGGAGACCGTGAGGCAGGGA	0.448								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					37	46					0	0	0.003755	0	0
ABCA13	154664	broad.mit.edu	37	7	48312681	48312681	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:48312681A>C	uc003toq.2	+	17	3443	c.3418A>C	c.(3418-3420)AAG>CAG	p.K1140Q	ABCA13_uc010kyr.2_Missense_Mutation_p.K643Q	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	1140					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TGTGTTCAACAAGTTTATGTC	0.348													17	80					0	0	0.004990	0	0
ABCA13	154664	broad.mit.edu	37	7	48316082	48316082	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:48316082C>T	uc003toq.2	+	17	6844	c.6819C>T	c.(6817-6819)TCC>TCT	p.S2273S	ABCA13_uc010kyr.2_Silent_p.S1776S	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	2273					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CATTCTTCTCCCTTTTTCTAA	0.343													14	38					0	0	0.003163	0	0
POM121L12	285877	broad.mit.edu	37	7	53103598	53103598	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:53103598C>T	uc003tpz.2	+	1	250	c.234C>T	c.(232-234)ATC>ATT	p.I78I		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	78											0						CCCACCTCATCGAGGTGCGGC	0.716													20	45					0	0	0.012319	0	0
LOC643955	643955	broad.mit.edu	37	7	62758752	62758752	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:62758752C>T	uc011kdj.1	-	2	126	c.58G>A	c.(58-60)GAC>AAC	p.D20N		NR_003952				Homo sapiens cDNA clone IMAGE:30377995, containing frame-shift errors.												0						ATAGCTATGTCTCTGAATGTC	0.403													13	75					0	0	0.012319	0	0
AUTS2	26053	broad.mit.edu	37	7	70255264	70255264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:70255264C>T	uc003tvw.3	+	19	3805	c.3062C>T	c.(3061-3063)TCG>TTG	p.S1021L	AUTS2_uc003tvx.3_Missense_Mutation_p.S997L|AUTS2_uc011keg.1_Missense_Mutation_p.S473L	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	1021										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		CCCCTGGCCTCGATGCCCATG	0.682													5	23					0	0	0.000602	0	0
CALN1	83698	broad.mit.edu	37	7	71275429	71275429	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:71275429G>A	uc003twa.3	-	5	951	c.424C>T	c.(424-426)CAT>TAT	p.H142Y	CALN1_uc003twb.3_Missense_Mutation_p.H184Y|CALN1_uc003twc.3_Missense_Mutation_p.H142Y	NM_001017440	NP_001017440	Q9BXU9	CABP8_HUMAN	calneuron 1 isoform 2	142	Cytoplasmic (Potential).					Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|plasma membrane	calcium ion binding			skin(1)	1		all_cancers(73;0.069)|Lung NSC(55;0.0658)|all_lung(88;0.0912)|all_epithelial(88;0.161)				CGGAAGGCATGATAGAGAATG	0.448													66	42					0	0	0.014410	0	0
STYXL1	51657	broad.mit.edu	37	7	75630321	75630321	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:75630321C>T	uc003uej.3	-	8	871	c.698_splice	c.e8-1	p.E233_splice	STYXL1_uc003uef.2_Intron|STYXL1_uc011kgf.1_Intron|STYXL1_uc011kgg.1_Intron|STYXL1_uc003ueh.2_Splice_Site_p.E95_splice|STYXL1_uc003uek.3_Splice_Site_p.E137_splice|STYXL1_uc003uel.2_Splice_Site_p.E233_splice|STYXL1_uc003uem.2_Splice_Site_p.E233_splice|STYXL1_uc010ldg.1_Intron|STYXL1_uc010ldh.1_Splice_Site_p.E233_splice|STYXL1_uc003uen.1_Intron	NM_016086	NP_057170	Q9Y6J8	STYL1_HUMAN	map kinase phosphatase-like protein MK-STYX						intracellular signal transduction|protein dephosphorylation	intracellular	protein binding|protein tyrosine/serine/threonine phosphatase activity				0						TGGTGAATTTCTGCAAAAAGA	0.557													26	60					0	0	0.004656	0	0
CCDC146	57639	broad.mit.edu	37	7	76889382	76889382	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:76889382C>T	uc003uga.2	+	8	942	c.815C>T	c.(814-816)TCC>TTC	p.S272F	CCDC146_uc010ldp.2_Missense_Mutation_p.S18F	NM_020879	NP_065930	Q8IYE0	CC146_HUMAN	coiled-coil domain containing 146	272	Potential.									ovary(1)|central_nervous_system(1)	2		all_cancers(73;0.128)|all_lung(88;0.0986)|all_epithelial(88;0.163)|Myeloproliferative disorder(862;0.205)				CTAAATGACTCCCTAAAGAAA	0.294													61	44					0	0	0.014410	0	0
PCLO	27445	broad.mit.edu	37	7	82784725	82784726	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:82784725_82784726GG>AA	uc003uhx.2	-	2	1520_1521	c.1231_1232CC>TT	c.(1231-1233)CCA>TTA	p.P411L	PCLO_uc003uhv.2_Missense_Mutation_p.P411L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	362	Gln-rich.|Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTGCTGGGTTGGAGGCTTTGCT	0.579													97	64					0	0	0.004672	0	0
ZNF804B	219578	broad.mit.edu	37	7	88964217	88964217	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:88964217C>A	uc011khi.1	+	4	2459	c.1921C>A	c.(1921-1923)CCC>ACC	p.P641T		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	641						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			TAAATTGATTCCCTGCAGTCC	0.428										HNSCC(36;0.09)			29	13					3.80469e-20	4.26374e-20	0.009535	1	0
CALCR	799	broad.mit.edu	37	7	93101800	93101800	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:93101800C>T	uc003umv.1	-	6	632	c.371_splice	c.e6-1	p.E124_splice	CALCR_uc003ums.1_Splice_Site|CALCR_uc003umt.1_Splice_Site|CALCR_uc003umu.1_Splice_Site_p.E106_splice|CALCR_uc003umw.2_Splice_Site_p.E106_splice	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor						activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	GTAACCTTTTCTGTTAATGAA	0.308													9	48					0	0	0.004482	0	0
TMEM130	222865	broad.mit.edu	37	7	98457947	98457947	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:98457947C>T	uc003upo.2	-	3	595	c.406G>A	c.(406-408)GAC>AAC	p.D136N	TMEM130_uc011kiq.1_Missense_Mutation_p.D117N|TMEM130_uc011kir.1_Missense_Mutation_p.D136N|TMEM130_uc003upn.2_Missense_Mutation_p.D34N	NM_001134450	NP_001127922	Q8N3G9	TM130_HUMAN	transmembrane protein 130 isoform a	136	Extracellular (Potential).					Golgi membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(62;4.05e-09)|all_epithelial(64;2.62e-09)|Lung NSC(181;0.01)|all_lung(186;0.0115)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			ACAACAAGGTCCCCCACGAGG	0.552													29	19					0	0	0.003271	0	0
PCOLCE	5118	broad.mit.edu	37	7	100200132	100200132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:100200132C>T	uc003uvo.2	+	1	251	c.53C>T	c.(52-54)GCC>GTC	p.A18V	uc011kjy.1_RNA|PCOLCE_uc011kkb.1_Missense_Mutation_p.A18V|PCOLCE_uc010lhb.1_RNA	NM_002593	NP_002584	Q15113	PCOC1_HUMAN	procollagen C-endopeptidase enhancer	18					multicellular organismal development	extracellular space	collagen binding|heparin binding|peptidase activator activity				0	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					ACTGCCTGCGCCCTGCTGCCT	0.642													70	38					0	0	0.014410	0	0
MUC17	140453	broad.mit.edu	37	7	100679004	100679004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:100679004C>T	uc003uxp.1	+	3	4360	c.4307C>T	c.(4306-4308)TCT>TTT	p.S1436F	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1436	Extracellular (Potential).|Ser-rich.|22.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GCCACTTCATCTCCTACAACT	0.517													66	243					0	0	0.014410	0	0
RINT1	60561	broad.mit.edu	37	7	105182879	105182879	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:105182879C>T	uc003vda.1	+	4	529	c.298C>T	c.(298-300)CCT>TCT	p.P100S	RINT1_uc010ljj.1_Intron	NM_021930	NP_068749	Q6NUQ1	RINT1_HUMAN	RAD50 interactor 1	100					cell cycle|G2/M transition DNA damage checkpoint|protein transport|vesicle-mediated transport	endoplasmic reticulum membrane	protein binding			ovary(3)|central_nervous_system(1)	4						ATCAGAAATTCCTAAAAGAAT	0.299													11	57					0	0	0.008291	0	0
CDHR3	222256	broad.mit.edu	37	7	105658498	105658498	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:105658498G>A	uc003vdl.3	+	12	1741	c.1633G>A	c.(1633-1635)GAA>AAA	p.E545K	CDHR3_uc003vdk.2_Intron|CDHR3_uc003vdm.3_Missense_Mutation_p.E532K|CDHR3_uc011klt.1_Missense_Mutation_p.E457K|CDHR3_uc003vdn.2_Intron	NM_152750	NP_689963	Q6ZTQ4	CDHR3_HUMAN	hypothetical protein LOC222256 precursor	545	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						CACCAACAACGAAGACACAAG	0.493													8	30					0	0	0.006214	0	0
LAMB4	22798	broad.mit.edu	37	7	107704409	107704409	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:107704409G>A	uc010ljo.1	-	22	2942	c.2858C>T	c.(2857-2859)TCT>TTT	p.S953F	LAMB4_uc003vey.2_Missense_Mutation_p.S953F|LAMB4_uc010ljp.1_5'UTR	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	953	Laminin EGF-like 9.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						GAAACCAGTAGAGCATTCTCC	0.473													31	75					0	0	0.010818	0	0
PNPLA8	50640	broad.mit.edu	37	7	108142951	108142951	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:108142951C>A	uc003vff.1	-	6	1749	c.1342G>T	c.(1342-1344)GAT>TAT	p.D448Y	PNPLA8_uc003vfg.1_RNA|PNPLA8_uc003vfh.1_Missense_Mutation_p.D448Y|PNPLA8_uc003vfi.1_Missense_Mutation_p.D348Y|PNPLA8_uc003vfj.1_Missense_Mutation_p.D448Y|PNPLA8_uc003vfk.1_Missense_Mutation_p.D348Y	NM_015723	NP_056538	Q9NP80	PLPL8_HUMAN	patatin-like phospholipase domain containing 8	448	Patatin.				fatty acid metabolic process|lipid catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|membrane fraction|perinuclear region of cytoplasm|peroxisomal membrane	ATP binding|calcium-independent phospholipase A2 activity|lysophospholipase activity			breast(2)	2						CCTCCACCATCAATTGAGAGA	0.289													73	36					9.13743e-30	1.02734e-29	0.014410	1	0
PPP1R3A	5506	broad.mit.edu	37	7	113519888	113519888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:113519888C>T	uc010ljy.1	-	4	1290	c.1259G>A	c.(1258-1260)GGA>GAA	p.G420E		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	420					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						ACTAGTATCTCCCAATGATGG	0.398													22	121					0	0	0.014323	0	0
WNT2	7472	broad.mit.edu	37	7	116960676	116960676	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:116960676C>T	uc003viz.2	-	2	555	c.255G>A	c.(253-255)TGG>TGA	p.W85*	WNT2_uc003vja.2_Missense_Mutation_p.E11K	NM_003391	NP_003382	P09544	WNT2_HUMAN	wingless-type MMTV integration site family	85					atrial cardiac muscle tissue morphogenesis|canonical Wnt receptor signaling pathway|cardiac epithelial to mesenchymal transition|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|dorsal/ventral axis specification|iris morphogenesis|labyrinthine layer blood vessel development|lens development in camera-type eye|lung induction|mammary gland epithelium development|neuron differentiation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of fibroblast proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|proteinaceous extracellular matrix	cytokine activity|frizzled binding|frizzled-2 binding|signal transducer activity			breast(2)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	7	all_epithelial(6;2.24e-06)|Lung NSC(10;0.000936)|all_lung(10;0.00109)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		TGTTGCAATTCCAGCGGTGCT	0.592													11	14					0	0	0.001855	0	0
C7orf58	79974	broad.mit.edu	37	7	120911467	120911467	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:120911467G>A	uc003vjq.3	+	22	3298	c.2851G>A	c.(2851-2853)GGA>AGA	p.G951R		NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	951						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					GGGGAAGTGTGGATGTCATTT	0.333													57	34					0	0	0.014410	0	0
SPAM1	6677	broad.mit.edu	37	7	123599727	123599727	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:123599727G>A	uc003vld.2	+	6	1636	c.1234G>A	c.(1234-1236)GGT>AGT	p.G412S	SPAM1_uc003vle.2_Missense_Mutation_p.G412S|SPAM1_uc011koa.1_Missense_Mutation_p.G68S|SPAM1_uc003vlf.3_Missense_Mutation_p.G412S|SPAM1_uc010lku.2_Missense_Mutation_p.G412S	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	412					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	ACTTGAGAAAGGTGGAAAGTT	0.398													11	58					0	0	0.010729	0	0
GRM8	2918	broad.mit.edu	37	7	126409978	126409978	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:126409978C>T	uc003vlr.2	-	6	1609	c.1298G>A	c.(1297-1299)CGA>CAA	p.R433Q	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.R433Q|GRM8_uc010lkz.1_RNA|GRM8_uc003vlu.1_Missense_Mutation_p.R154Q	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	433	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	GGTACTCATTCGTGGACAAAG	0.403										HNSCC(24;0.065)			41	25					0	0	0.010771	0	0
PAX4	5078	broad.mit.edu	37	7	127254549	127254549	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:127254549C>T	uc010lld.1	-	3	605	c.399G>A	c.(397-399)CGG>CGA	p.R133R	PAX4_uc003vmf.2_Silent_p.R131R|PAX4_uc003vmg.1_Silent_p.R133R|PAX4_uc003vmh.2_Silent_p.R131R	NM_006193	NP_006184	O43316	PAX4_HUMAN	paired box 4	141			R -> W (confers susceptibility to ketosis-prone diabetes mellitus).		cell differentiation|endocrine pancreas development|organ morphogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GTGACCTGAGCCGTGTGCACG	0.463													4	9					0	0	0.009096	0	0
TNPO3	23534	broad.mit.edu	37	7	128626824	128626824	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:128626824G>A	uc003vol.1	-	12	2023	c.1649C>T	c.(1648-1650)TCC>TTC	p.S550F	TNPO3_uc010llx.1_5'Flank|TNPO3_uc003vom.1_Missense_Mutation_p.S484F|TNPO3_uc010lly.1_Missense_Mutation_p.S584F|TNPO3_uc010llz.1_Intron	NM_012470	NP_036602	Q9Y5L0	TNPO3_HUMAN	transportin 3	550					splicing factor protein import into nucleus	cytoplasm|nucleus	protein binding|receptor activity			ovary(2)|skin(2)|lung(1)	5						CAACAGGAAGGAATCGAGGGA	0.488													24	69					0	0	0.004656	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453137	+	Missense_Mutation	DNP	AC	TT	TT	rs121913378		TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:140453136_140453137AC>TT	uc003vwc.3	-	15	1859_1860	c.1798_1799GT>AA	c.(1798-1800)GTG>AAG	p.V600K		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAGA	0.366	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)|V600M(IGR1_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				47	25					0	0	0.004672	0	0
MGAM	8972	broad.mit.edu	37	7	141734562	141734562	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:141734562G>A	uc003vwy.2	+	16	1934	c.1880G>A	c.(1879-1881)GGA>GAA	p.G627E		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	627	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CATTGGTTAGGAGACAACACT	0.522													37	12					0	0	0.004878	0	0
MGAM	8972	broad.mit.edu	37	7	141755362	141755362	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:141755362G>A	uc003vwy.2	+	28	3373	c.3319G>A	c.(3319-3321)GAC>AAC	p.D1107N		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1107	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TTTCAGTTGGGACTCTCAGCT	0.453													24	89					0	0	0.006320	0	0
PDIA4	9601	broad.mit.edu	37	7	148702402	148702402	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:148702402G>A	uc003wff.2	-	9	1635	c.1353C>T	c.(1351-1353)GCC>GCT	p.A451A		NM_004911	NP_004902	P13667	PDIA4_HUMAN	protein disulfide isomerase A4 precursor	451					cell redox homeostasis|glycerol ether metabolic process|protein secretion	endoplasmic reticulum lumen|melanosome	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			lung(5)|ovary(1)	6	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00385)			CGTCCGCAATGGCAAAGGTGT	0.587											OREG0018420	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	90	50					0	0	0.014410	0	0
KCNH2	3757	broad.mit.edu	37	7	150656679	150656680	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:150656679_150656680GG>AA	uc003wic.2	-	3	465_466	c.452_453CC>TT	c.(451-453)CCC>CTT	p.P151L	KCNH2_uc011kux.1_Missense_Mutation_p.P55L|KCNH2_uc003wie.2_Missense_Mutation_p.P151L	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	151	Cytoplasmic (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	GCCAGCTGGTGGGGGGGCCCCG	0.589													14	69					0	0	0.004672	0	0
ABCB8	11194	broad.mit.edu	37	7	150732708	150732708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:150732708C>T	uc003wil.3	+	7	950	c.857C>T	c.(856-858)TCC>TTC	p.S286F	ABCB8_uc003wii.2_Missense_Mutation_p.S306F|ABCB8_uc003wij.3_Missense_Mutation_p.S269F|ABCB8_uc010lpw.1_Missense_Mutation_p.S88F|ABCB8_uc010lpx.2_Missense_Mutation_p.S269F|ABCB8_uc011kvd.1_Missense_Mutation_p.S181F|ABCB8_uc003wim.3_Missense_Mutation_p.S64F|ABCB8_uc003wik.3_Missense_Mutation_p.S269F	NM_007188	NP_009119	Q9NUT2	ABCB8_HUMAN	ATP-binding cassette, sub-family B, member 8	286	ABC transmembrane type-1.					ATP-binding cassette (ABC) transporter complex|integral to membrane|membrane fraction|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGCCTGGTGTCCCTGTCCATG	0.647													51	26					0	0	0.014410	0	0
NUB1	51667	broad.mit.edu	37	7	151052945	151052945	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:151052945C>T	uc003wjx.2	+	6	584	c.579C>T	c.(577-579)TTC>TTT	p.F193F	NUB1_uc003wjv.2_RNA|NUB1_uc003wjw.2_Silent_p.F169F|NUB1_uc010lqb.2_RNA|NUB1_uc003wjy.2_RNA|NUB1_uc011kvj.1_Intron|NUB1_uc010lqc.2_RNA	NM_016118	NP_057202	Q9Y5A7	NUB1_HUMAN	NEDD8 ultimate buster-1	169	Potential.				positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|response to interferon-gamma|response to tumor necrosis factor|ubiquitin-dependent protein catabolic process	nucleus	protein binding				0			OV - Ovarian serous cystadenocarcinoma(82;0.00569)	UCEC - Uterine corpus endometrioid carcinoma (81;0.172)		GGAAAAACTTCCAGTTAGAGG	0.428													5	24					0	0	0.000602	0	0
HTR5A	3361	broad.mit.edu	37	7	154875939	154875939	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:154875939G>A	uc003wlu.1	+	2	880	c.816G>A	c.(814-816)GGG>GGA	p.G272G		NM_024012	NP_076917	P47898	5HT5A_HUMAN	5-hydroxytryptamine receptor 5A	272	Cytoplasmic (By similarity).					integral to plasma membrane	serotonin receptor activity			ovary(2)|large_intestine(1)	3	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0238)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		AGCCAGAAGGGGACACGTGGC	0.602													40	16					0	0	0.006230	0	0
CSMD1	64478	broad.mit.edu	37	8	3265606	3265606	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:3265606A>C	uc011kwk.1	-	14	2279	c.1889T>G	c.(1888-1890)TTT>TGT	p.F630C	CSMD1_uc011kwj.1_Missense_Mutation_p.F22C	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	630	Extracellular (Potential).|CUB 4.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CTCAACATCAAAATCATTAAA	0.433													9	26					0	0	0.010729	0	0
CSMD1	64478	broad.mit.edu	37	8	3265640	3265640	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:3265640G>C	uc011kwk.1	-	14	2245	c.1855C>G	c.(1855-1857)CCA>GCA	p.P619A	CSMD1_uc011kwj.1_Missense_Mutation_p.P11A	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	619	Extracellular (Potential).|CUB 4.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CGACTTCCTGGCTCCGAGATA	0.408													5	21					0	0	0.001168	0	0
PINX1	54984	broad.mit.edu	37	8	10622952	10622952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:10622952C>T	uc003wth.2	-	7	979	c.946G>A	c.(946-948)GAA>AAA	p.E316K	SOX7_uc011kwz.1_Intron|PINX1_uc003wti.2_3'UTR	NM_017884	NP_060354	Q96BK5	PINX1_HUMAN	PIN2-interacting protein 1	316	Telomerase inhibitory domain (TID).				mitotic metaphase plate congression|negative regulation of cell proliferation	chromosome, telomeric region|condensed chromosome kinetochore|mitochondrion|nuclear chromosome|nucleolus|spindle	protein binding|telomerase inhibitor activity|telomeric RNA binding			lung(1)|kidney(1)|skin(1)	3				Kidney(29;0.0595)|COAD - Colon adenocarcinoma(149;0.105)|KIRC - Kidney renal clear cell carcinoma(542;0.201)		ACTAGCGTTTCTTCTAGTGTA	0.532													7	25					0	0	0.001984	0	0
XKR6	286046	broad.mit.edu	37	8	10756182	10756182	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:10756182G>A	uc003wtk.1	-	3	1233	c.1206C>T	c.(1204-1206)ATC>ATT	p.I402I		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	402						integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		TTCCGCCATGGATGATCCAGA	0.502													22	27					0	0	0.002780	0	0
SGCZ	137868	broad.mit.edu	37	8	14412356	14412356	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:14412356C>T	uc003wwq.2	-	2	779	c.119G>A	c.(118-120)GGA>GAA	p.G40E	SGCZ_uc010lss.2_Missense_Mutation_p.G27E	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	27	Cytoplasmic (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		TCCATAAATTCCCACTGGGTA	0.368													24	110					0	0	0.004656	0	0
TNFRSF10A	8797	broad.mit.edu	37	8	23049351	23049351	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:23049351C>T	uc003xda.2	-	10	1328	c.1263G>A	c.(1261-1263)CGG>CGA	p.R421R		NM_003844	NP_003835	O00220	TR10A_HUMAN	tumor necrosis factor receptor superfamily,	421	Cytoplasmic (Potential).|Death.				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors		caspase activator activity|death receptor activity|TRAIL binding|transcription factor binding			central_nervous_system(3)|ovary(2)|skin(1)	6		Prostate(55;0.0421)|Breast(100;0.14)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)		TCGAGGCGTTCCGTCCAGTTT	0.512													29	85					0	0	0.010818	0	0
SLC25A37	51312	broad.mit.edu	37	8	23429126	23429126	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:23429126A>G	uc003xdo.2	+	4	928	c.775A>G	c.(775-777)AAG>GAG	p.K259E	SLC25A37_uc003xdp.2_RNA|SLC25A37_uc010ltz.2_RNA|SLC25A37_uc003xdq.2_RNA|uc003xds.2_5'Flank	NM_016612	NP_057696	Q9NYZ2	MFRN1_HUMAN	solute carrier family 25, member 37	259	Solcar 3.				ion transport|iron ion homeostasis	integral to membrane|mitochondrial inner membrane					0		Prostate(55;0.114)		Colorectal(74;0.0198)|COAD - Colon adenocarcinoma(73;0.0751)		GGACGTCTGTAAGACCCTTCT	0.672													8	23					0	0	0.003080	0	0
ADAM7	8756	broad.mit.edu	37	8	24342831	24342831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:24342831C>T	uc003xeb.2	+	10	1030	c.917C>T	c.(916-918)CCA>CTA	p.P306L	ADAM7_uc003xec.2_Missense_Mutation_p.P78L	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	306	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		ATTTCTTATCCAGGGGGTATG	0.338													15	60					0	0	0.012319	0	0
NEFM	4741	broad.mit.edu	37	8	24775166	24775166	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:24775166G>A	uc003xed.3	+	3	1831	c.1798G>A	c.(1798-1800)GAG>AAG	p.E600K	NEFM_uc011lac.1_Intron|NEFM_uc010lue.2_Missense_Mutation_p.E224K	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	600	Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		TACCAAGGAGGAGCTGGTGGC	0.303													20	15					0	0	0.010504	0	0
CDCA2	157313	broad.mit.edu	37	8	25364185	25364185	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:25364185C>T	uc003xep.1	+	15	2482	c.2003C>T	c.(2002-2004)TCG>TTG	p.S668L	PPP2R2A_uc003xek.2_Intron|CDCA2_uc011lae.1_3'UTR|CDCA2_uc003xeq.1_Missense_Mutation_p.S653L|CDCA2_uc003xer.1_Missense_Mutation_p.S331L	NM_152562	NP_689775	Q69YH5	CDCA2_HUMAN	cell division cycle associated 2	668					cell division|mitosis	cytoplasm|nucleus					0		all_cancers(63;0.0378)|Ovarian(32;0.000878)|all_epithelial(46;0.0162)|Breast(100;0.0164)|Prostate(55;0.191)		UCEC - Uterine corpus endometrioid carcinoma (27;0.022)|Epithelial(17;1.37e-11)|Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0443)		AGTTCCTCATCGCTTGGCAAT	0.313													9	52					0	0	0.006214	0	0
WRN	7486	broad.mit.edu	37	8	30969258	30969258	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:30969258T>C	uc003xio.3	+	19	3004	c.2216T>C	c.(2215-2217)GTT>GCT	p.V739A	WRN_uc010lvk.2_Missense_Mutation_p.V206A	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	739					base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		TATTTAGAAGTTAGGCGAAAA	0.383			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				16	45					0	0	0.004990	0	0
KCNU1	157855	broad.mit.edu	37	8	36793308	36793308	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:36793308G>A	uc010lvw.2	+	27	3407	c.3320G>A	c.(3319-3321)TGG>TAG	p.W1107*		NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	1107	Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		CAAATAGCATGGAATCAGAGT	0.378													43	93					0	0	0.014410	0	0
GPR124	25960	broad.mit.edu	37	8	37697721	37697721	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:37697721C>T	uc003xkj.2	+	17	2957	c.2594C>T	c.(2593-2595)ACC>ATC	p.T865I	GPR124_uc010lvy.2_Missense_Mutation_p.T648I	NM_032777	NP_116166	Q96PE1	GP124_HUMAN	G protein-coupled receptor 124 precursor	865	Cytoplasmic (Potential).				central nervous system development|endothelial cell migration|neuropeptide signaling pathway|regulation of angiogenesis|regulation of chemotaxis|sprouting angiogenesis	integral to membrane|plasma membrane	G-protein coupled receptor activity			large_intestine(2)|ovary(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)			AAGGAGCTCACCTGGAGGGCA	0.612													27	30					0	0	0.004656	0	0
ADAM9	8754	broad.mit.edu	37	8	38879213	38879213	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:38879213C>T	uc003xmr.2	+	8	802	c.724C>T	c.(724-726)CTG>TTG	p.L242L	ADAM9_uc011lcf.1_RNA|ADAM9_uc011lcg.1_RNA|ADAM9_uc010lwr.2_RNA	NM_003816	NP_003807	Q13443	ADAM9_HUMAN	ADAM metallopeptidase domain 9 isoform 1	242	Extracellular (Potential).|Peptidase M12B.				activation of MAPKK activity|cell-cell adhesion mediated by integrin|cell-matrix adhesion|keratinocyte differentiation|monocyte activation|PMA-inducible membrane protein ectodomain proteolysis|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell adhesion mediated by integrin|positive regulation of keratinocyte migration|positive regulation of macrophage fusion|positive regulation of membrane protein ectodomain proteolysis|positive regulation of protein secretion|response to calcium ion|response to glucocorticoid stimulus|response to hydrogen peroxide|response to manganese ion|response to tumor necrosis factor|transforming growth factor beta receptor signaling pathway	extracellular space|extracellular space|integral to membrane|intrinsic to external side of plasma membrane	collagen binding|integrin binding|laminin binding|metalloendopeptidase activity|protein kinase C binding|SH3 domain binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_lung(54;0.00292)|Lung NSC(58;0.0115)|Hepatocellular(245;0.0153)	LUSC - Lung squamous cell carcinoma(45;2.74e-07)			GATGATTCTCCTGGCAAACTA	0.363													40	20					0	0	0.009718	0	0
ADAM32	203102	broad.mit.edu	37	8	39091417	39091417	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:39091417G>A	uc003xmt.3	+	16	1880	c.1635_splice	c.e16-1	p.R545_splice	ADAM32_uc011lch.1_Splice_Site_p.R446_splice|ADAM32_uc003xmu.3_Splice_Site_p.R439_splice|ADAM32_uc003xmv.2_Intron	NM_145004	NP_659441	Q8TC27	ADA32_HUMAN	a disintegrin and metalloprotease domain 32						proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)|kidney(1)	3		all_cancers(7;3e-05)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00771)|Breast(189;0.0503)	LUSC - Lung squamous cell carcinoma(45;6.2e-07)|Colorectal(1;0.00699)|READ - Rectum adenocarcinoma(1;0.146)			TATGTTTTCAGGAATCTTATA	0.313													3	7					0	0	0.004672	0	0
ADAM18	8749	broad.mit.edu	37	8	39495126	39495126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:39495126C>T	uc003xni.2	+	9	731	c.731C>T	c.(730-732)TCC>TTC	p.S244F	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.S220F	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	244	Peptidase M12B.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			AACCAGATTTCCACCAGTGGG	0.363													8	27					0	0	0.006214	0	0
ADAM18	8749	broad.mit.edu	37	8	39505984	39505984	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:39505984C>T	uc003xni.2	+	12	1168	c.1168C>T	c.(1168-1170)CAA>TAA	p.Q390*	ADAM18_uc010lww.2_Intron|ADAM18_uc010lwx.2_Nonsense_Mutation_p.Q366*	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	390	Disintegrin.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			ACATCAAAATCAACCAGTGTG	0.333													4	22					0	0	0.009096	0	0
OPRK1	4986	broad.mit.edu	37	8	54147319	54147319	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:54147319C>T	uc003xrh.1	-	2	985	c.610G>A	c.(610-612)GAC>AAC	p.D204N	OPRK1_uc003xri.1_Missense_Mutation_p.D204N|OPRK1_uc010lyc.1_Missense_Mutation_p.D115N	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	204	Extracellular (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	CTGCTCTTACCTTCCCTGACT	0.413													7	48					0	0	0.003080	0	0
PLAG1	5324	broad.mit.edu	37	8	57079149	57079149	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:57079149G>A	uc003xsq.3	-	3	1607	c.1156C>T	c.(1156-1158)CCT>TCT	p.P386S	PLAG1_uc003xsr.3_Missense_Mutation_p.P386S|PLAG1_uc010lyi.2_Missense_Mutation_p.P386S|PLAG1_uc010lyj.2_Missense_Mutation_p.P304S	NM_001114635	NP_001108107	Q6DJT9	PLAG1_HUMAN	pleiomorphic adenoma gene 1 isoform b	386	Activates transcription; Inhibition of nuclear import due to lack of NLS and KPNA2 interaction.|Massively activates transcription.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding		CTNNB1/PLAG1(60)|FGFR1_ENST00000447712/PLAG1(28)|CHCHD7/PLAG1(12)|LIFR_ENST00000263409/PLAG1(10)|HAS2/PLAG1(10)|COL1A2/PLAG1(3)|TCEA1_ENST00000521604/PLAG1(3)	salivary_gland(113)|soft_tissue(13)|lung(1)|central_nervous_system(1)|breast(1)	129		all_lung(136;0.0548)|Lung NSC(129;0.0718)|all_epithelial(80;0.125)	Epithelial(17;0.00179)|all cancers(17;0.0125)			CCAATCTGAGGATCCAACCCT	0.483			T	TCEA1|LIFR|CTNNB1|CHCHD7	salivary adenoma								70	48					0	0	0.014410	0	0
TOX	9760	broad.mit.edu	37	8	59851871	59851871	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:59851871G>A	uc003xtw.1	-	3	622	c.401C>T	c.(400-402)TCC>TTC	p.S134F		NM_014729	NP_055544	O94900	TOX_HUMAN	thymus high mobility group box protein TOX	134						nucleus	DNA binding			kidney(2)|lung(1)|skin(1)	4		all_cancers(86;0.165)|Myeloproliferative disorder(644;0.00452)|all_lung(136;0.036)|Lung NSC(129;0.0464)|all_epithelial(80;0.0607)				CACAGAAATGGAATTAGAAAG	0.473													34	42					0	0	0.004878	0	0
ZFHX4	79776	broad.mit.edu	37	8	77763759	77763759	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:77763759C>T	uc003yav.2	+	10	4854	c.4467C>T	c.(4465-4467)TTC>TTT	p.F1489F	ZFHX4_uc003yau.1_Silent_p.F1534F|ZFHX4_uc003yaw.1_Silent_p.F1489F	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1489						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TGGAAAAATTCCTTGATCCAT	0.398										HNSCC(33;0.089)			9	36					0	0	0.010729	0	0
ZFHX4	79776	broad.mit.edu	37	8	77776277	77776277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:77776277C>T	uc003yav.2	+	11	10579	c.10192C>T	c.(10192-10194)CCA>TCA	p.P3398S		NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	3394						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GCTTCGTGTCCCAGTCAGCAA	0.448										HNSCC(33;0.089)			9	23					0	0	0.008291	0	0
CA1	759	broad.mit.edu	37	8	86253845	86253845	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:86253845C>T	uc003ydh.2	-	3	220	c.20G>A	c.(19-21)GGA>GAA	p.G7E	CA13_uc003ydf.1_Intron|CA1_uc010mae.1_Missense_Mutation_p.G7E|CA1_uc003ydi.2_Missense_Mutation_p.G7E	NM_001738	NP_001729	P00915	CAH1_HUMAN	carbonic anhydrase I	7					one-carbon metabolic process	Golgi apparatus	carbonate dehydratase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_lung(136;4.89e-06)			Acetazolamide(DB00819)|Amlodipine(DB00381)|Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Brinzolamide(DB01194)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Dichlorphenamide(DB01144)|Ethinamate(DB01031)|Ethoxzolamide(DB00311)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Levetiracetam(DB01202)|Methazolamide(DB00703)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)|Verapamil(DB00661)|Zonisamide(DB00909)	GTCATCATATCCCCAGTCTGG	0.323													8	41					0	0	0.006214	0	0
REXO1L1	254958	broad.mit.edu	37	8	86574480	86574480	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:86574480C>G	uc011lfw.1	-	1	789	c.743G>C	c.(742-744)CGT>CCT	p.R248P		NM_172239	NP_758439	Q8IX06	GOR_HUMAN	exonuclease GOR	416	GOR1-125 epitope.					cytoplasm|nucleus	exonuclease activity|nucleic acid binding				0						GGTGCCACAACGGCAGCAGAC	0.682													3	31					0	0	0.004672	0	0
GRHL2	79977	broad.mit.edu	37	8	102585948	102585948	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:102585948G>A	uc010mbu.2	+	6	1117	c.787G>A	c.(787-789)GGG>AGG	p.G263R	GRHL2_uc011lhi.1_Missense_Mutation_p.G263R	NM_024915	NP_079191	Q6ISB3	GRHL2_HUMAN	transcription factor CP2-like 3	263						cytoplasm|nucleus	DNA binding			ovary(2)|skin(1)	3	all_cancers(14;4.39e-08)|all_epithelial(15;4.09e-10)|Lung NSC(17;7.11e-06)|all_lung(17;1.44e-05)		Epithelial(11;5.81e-09)|all cancers(13;3.81e-07)|OV - Ovarian serous cystadenocarcinoma(57;0.000213)			TCAGAAGCAGGGGGAGGGCCC	0.507													15	40					0	0	0.003163	0	0
ZFPM2	23414	broad.mit.edu	37	8	106814923	106814923	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:106814923C>T	uc003ymd.2	+	8	2636	c.2613C>T	c.(2611-2613)GCC>GCT	p.A871A	ZFPM2_uc011lhs.1_Silent_p.A602A	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	871	C2HC-type 4.				blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			ACTATCTGGCCCACAAGCAGA	0.507													9	19					0	0	0.004482	0	0
RSPO2	340419	broad.mit.edu	37	8	109001367	109001367	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:109001367C>T	uc003yms.2	-	3	858	c.200G>A	c.(199-201)GGG>GAG	p.G67E	RSPO2_uc003ymq.2_5'UTR|RSPO2_uc003ymr.2_Intron	NM_178565	NP_848660	Q6UXX9	RSPO2_HUMAN	R-spondin family, member 2 precursor	67					Wnt receptor signaling pathway	extracellular region	heparin binding			skin(3)|ovary(2)|pancreas(1)|lung(1)	7			OV - Ovarian serous cystadenocarcinoma(57;1.55e-09)			CTGGCGCATCCCTTCTCTTCG	0.473													25	49					0	0	0.003330	0	0
TMEM74	157753	broad.mit.edu	37	8	109796576	109796576	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:109796576A>C	uc003ymy.1	-	2	857	c.752T>G	c.(751-753)ATG>AGG	p.M251R	TMEM74_uc003ymx.2_Intron	NM_153015	NP_694560	Q96NL1	TMM74_HUMAN	transmembrane protein 74	251	Helical; (Potential).				autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(57;3.08e-10)			CATGGACATCATTAACAAGCA	0.542													14	34					0	0	0.004007	0	0
SYBU	55638	broad.mit.edu	37	8	110655095	110655095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:110655095G>A	uc003ynj.3	-	2	254	c.91C>T	c.(91-93)CGG>TGG	p.R31W	SYBU_uc003yni.3_Missense_Mutation_p.R28W|SYBU_uc003ynk.3_Intron|SYBU_uc010mco.2_Missense_Mutation_p.R30W|SYBU_uc003ynl.3_Missense_Mutation_p.R30W|SYBU_uc010mcp.2_Missense_Mutation_p.R31W|SYBU_uc010mcq.2_Missense_Mutation_p.R31W|SYBU_uc003yno.3_Intron|SYBU_uc010mcr.2_Missense_Mutation_p.R31W|SYBU_uc003ynm.3_Missense_Mutation_p.R30W|SYBU_uc003ynn.3_Missense_Mutation_p.R30W|SYBU_uc010mcs.2_Intron|SYBU_uc010mct.2_Missense_Mutation_p.R31W|SYBU_uc010mcu.2_Missense_Mutation_p.R30W|SYBU_uc003ynp.3_Intron|SYBU_uc010mcv.2_Missense_Mutation_p.R31W|uc003ynq.1_5'Flank	NM_001099754	NP_001093224	Q9NX95	SYBU_HUMAN	Golgi-localized syntaphilin-related protein	31	Sufficient for interaction with KIF5B.					cytoplasmic membrane-bounded vesicle|cytoskeleton|Golgi membrane|integral to membrane				ovary(1)	1						ATATGGGGCCGAAGAATCAAC	0.502													32	80					0	0	0.012213	0	0
CSMD3	114788	broad.mit.edu	37	8	113318249	113318250	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:113318249_113318250GG>AT	uc003ynu.2	-	51	8216_8217	c.8057_8058CC>AT	c.(8056-8058)ACC>AAT	p.T2686N	CSMD3_uc003yns.2_Missense_Mutation_p.T1888N|CSMD3_uc003ynt.2_Missense_Mutation_p.T2646N|CSMD3_uc011lhx.1_Missense_Mutation_p.T2582N	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2686	Extracellular (Potential).|Sushi 15.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CACAGCGAGGGGTCTTGTTATG	0.347										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			54	40					0	0	0.004672	0	0
CSMD3	114788	broad.mit.edu	37	8	113988153	113988153	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:113988153G>A	uc003ynu.2	-	7	1414	c.1255C>T	c.(1255-1257)CCA>TCA	p.P419S	CSMD3_uc003ynt.2_Missense_Mutation_p.P379S|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	419	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GTATCTGCTGGATGAGGAGAG	0.468										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			29	67					0	0	0.007291	0	0
TNFRSF11B	4982	broad.mit.edu	37	8	119936747	119936747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:119936747G>A	uc003yon.3	-	5	1395	c.1072C>T	c.(1072-1074)CCC>TCC	p.P358S		NM_002546	NP_002537	O00300	TR11B_HUMAN	osteoprotegerin precursor	358	Death 2.				apoptosis|skeletal system development		cytokine activity|receptor activity			central_nervous_system(2)	2	all_cancers(13;3.71e-26)|Lung NSC(37;1.69e-07)|Ovarian(258;0.018)|all_neural(195;0.0592)|Hepatocellular(40;0.234)		STAD - Stomach adenocarcinoma(47;0.00193)			ACAGTTTTGGGAAAGTGGTAC	0.413													89	81					0	0	0.014410	0	0
DENND3	22898	broad.mit.edu	37	8	142176349	142176349	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:142176349G>A	uc003yvy.2	+	12	1652	c.1374G>A	c.(1372-1374)AAG>AAA	p.K458K	DENND3_uc010mep.2_Silent_p.K419K|DENND3_uc003yvz.1_Silent_p.K142K	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	458										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			CCTCCCGGAAGTCCTCGCACC	0.542													43	118					0	0	0.010771	0	0
EPPK1	83481	broad.mit.edu	37	8	144945250	144945250	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:144945250G>A	uc003zaa.1	-	1	2185	c.2172C>T	c.(2170-2172)ATC>ATT	p.I724I		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	724	Plectin 14.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CGCCCGTGGCGATCTGGGCCT	0.662													29	57					0	0	0.005443	0	0
ZNF34	80778	broad.mit.edu	37	8	145998669	145998669	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr8:145998669C>T	uc003zdy.3	-	6	1767	c.1665G>A	c.(1663-1665)CGG>CGA	p.R555R	ZNF34_uc010mgb.2_Silent_p.R452R|ZNF34_uc003zdx.3_Silent_p.R534R	NM_030580	NP_085057	Q8IZ26	ZNF34_HUMAN	zinc finger protein 34	555					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.221)	OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;5.18e-38)|all cancers(56;4.41e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.0179)		AGAAGTCCTCCCGGAGGTGAA	0.602													9	22					0	0	0.004482	0	0
SH3GL2	6456	broad.mit.edu	37	9	17747095	17747095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:17747095G>A	uc003zna.2	+	2	365	c.77G>A	c.(76-78)GGA>GAA	p.G26E	SH3GL2_uc011lmx.1_5'UTR|SH3GL2_uc011lmy.1_5'UTR	NM_003026	NP_003017	Q99962	SH3G2_HUMAN	SH3-domain GRB2-like 2	26	BAR.|Binds and tubulates liposomes (By similarity).				axon guidance|central nervous system development|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport	cytosol|Golgi membrane|plasma membrane	identical protein binding|lipid binding			skin(1)	1				GBM - Glioblastoma multiforme(50;2.71e-10)|Lung(42;0.203)		GGAGCTGAAGGAACCAAGCTA	0.358													14	3					0	0	0.004007	0	0
IFNA21	3452	broad.mit.edu	37	9	21166467	21166467	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:21166467G>A	uc003zom.2	-	1	193	c.145C>T	c.(145-147)CCT>TCT	p.P49S		NM_002175	NP_002166	P01568	IFN21_HUMAN	interferon, alpha 21 precursor	49					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding	p.P49H(1)		central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(5;1.93e-187)|Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		CAGGAGAAAGGAGAGATTCTT	0.517													78	21					0	0	0.014410	0	0
IFNA16	3449	broad.mit.edu	37	9	21217032	21217032	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:21217032G>A	uc003zor.1	-	1	279	c.273C>T	c.(271-273)TTC>TTT	p.F91F	IFNA14_uc003zoo.1_Intron	NM_002173	NP_002164	P05015	IFN16_HUMAN	interferon, alpha 16 precursor	91					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			skin(1)	1				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		CCTTTGTGCTGAAGAGATTGA	0.478													65	14					0	0	0.014410	0	0
RECK	8434	broad.mit.edu	37	9	36102143	36102143	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:36102143G>A	uc003zyv.2	+	12	1437	c.1351G>A	c.(1351-1353)GAA>AAA	p.E451K	RECK_uc003zyw.2_Missense_Mutation_p.E323K|RECK_uc003zyx.2_RNA	NM_021111	NP_066934	O95980	RECK_HUMAN	RECK protein precursor	451						anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)	3			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)			CAAATTCCCTGAAGACCACAC	0.373													7	25					0	0	0.001984	0	0
TMEM2	23670	broad.mit.edu	37	9	74349793	74349793	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:74349793G>A	uc011lsa.1	-	6	1862	c.1322C>T	c.(1321-1323)TCC>TTC	p.S441F	TMEM2_uc010mos.2_Intron|TMEM2_uc011lsb.1_RNA	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	441						integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		TTGGTACATGGAATAGTCTGT	0.438													53	16					0	0	0.014410	0	0
C9orf64	84267	broad.mit.edu	37	9	86554458	86554458	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:86554458G>A	uc004anb.2	-	4	1242	c.994C>T	c.(994-996)CCG>TCG	p.P332S	C9orf64_uc004anc.2_Missense_Mutation_p.P191S	NM_032307	NP_115683	Q5T6V5	CI064_HUMAN	hypothetical protein LOC84267	332											0						CGATGAAACGGAATTCCTTTC	0.373													20	6					0	0	0.007413	0	0
KLF4	9314	broad.mit.edu	37	9	110249674	110249674	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:110249674A>G	uc004bdh.2	-	3	1595	c.974T>C	c.(973-975)CTG>CCG	p.L325P	KLF4_uc004bdf.1_Missense_Mutation_p.L284P|KLF4_uc004bdg.2_Missense_Mutation_p.L334P	NM_004235	NP_004226	O43474	KLF4_HUMAN	Kruppel-like factor 4 (gut)	334	Pro-rich.				fat cell differentiation|mesodermal cell fate determination|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|stem cell maintenance|transcription from RNA polymerase II promoter	nucleus	RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor recruiting transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(2)|lung(1)	3						AGGAAGCGGCAGGGCAGGGTG	0.662													5	0					0	0	0.000602	0	0
SVEP1	79987	broad.mit.edu	37	9	113173882	113173882	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:113173882G>A	uc010mtz.2	-	37	6446	c.6109C>T	c.(6109-6111)CGG>TGG	p.R2037W	SVEP1_uc010mty.2_5'UTR	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2037	Sushi 11.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CCAAAGAGCCGATGGGCAGTC	0.572													16	4					0	0	0.004990	0	0
MUSK	4593	broad.mit.edu	37	9	113547266	113547266	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:113547266G>A	uc004bey.2	+	11	1654	c.1556G>A	c.(1555-1557)CGA>CAA	p.R519Q	MUSK_uc004bez.1_Missense_Mutation_p.R99Q	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	519	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						TATTGCTGCCGAAGAAGAAAA	0.358													27	51					0	0	0.008361	0	0
PAPPA	5069	broad.mit.edu	37	9	118974126	118974126	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:118974126C>T	uc004bjn.2	+	4	2214	c.1833C>T	c.(1831-1833)TCC>TCT	p.S611S	PAPPA_uc011lxp.1_Intron|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	611					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						AACACAAGTCCTGTGGTGACC	0.527													107	29					0	0	0.014410	0	0
C5	727	broad.mit.edu	37	9	123780002	123780002	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:123780002G>A	uc004bkv.2	-	13	1665	c.1635C>T	c.(1633-1635)ATC>ATT	p.I545I	C5_uc010mvm.1_Silent_p.I545I|C5_uc010mvn.1_Silent_p.I545I	NM_001735	NP_001726	P01031	CO5_HUMAN	complement component 5 preproprotein	545					activation of MAPK activity|chemotaxis|complement activation, alternative pathway|complement activation, classical pathway|cytolysis|G-protein coupled receptor protein signaling pathway|inflammatory response|negative regulation of macrophage chemotaxis|positive regulation of chemokine secretion|positive regulation vascular endothelial growth factor production	extracellular space|membrane attack complex	chemokine activity|endopeptidase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(323;4.98e-53)|GBM - Glioblastoma multiforme(294;0.0242)	Eculizumab(DB01257)	CTCCTGTGACGATGTAATAGA	0.398													22	12					0	0	0.002780	0	0
OR1N2	138882	broad.mit.edu	37	9	125316149	125316149	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:125316149C>T	uc011lyx.1	+	1	701	c.701C>T	c.(700-702)TCC>TTC	p.S234F		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	234	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						ATCGTCTTCTCCTATGTCCGC	0.522													65	15					0	0	0.014410	0	0
RC3H2	54542	broad.mit.edu	37	9	125617595	125617595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:125617595G>A	uc010mwc.1	-	15	2924	c.2683C>T	c.(2683-2685)CCC>TCC	p.P895S	RC3H2_uc004bnc.2_RNA|RC3H2_uc004bnd.1_Missense_Mutation_p.P895S|RC3H2_uc004bne.3_Missense_Mutation_p.P895S	NM_001100588	NP_001094058	Q9HBD1	RC3H2_HUMAN	ring finger and CCCH-type zinc finger domains 2	895						cell surface|endomembrane system|membrane|membrane fraction|perinuclear region of cytoplasm	DNA binding|zinc ion binding			ovary(2)|lung(2)	4						TCACTAAAGGGAATTATTGGA	0.433													17	9					0	0	0.004007	0	0
GAPVD1	26130	broad.mit.edu	37	9	128088795	128088795	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:128088795G>A	uc010mwx.2	+	12	2285	c.1959G>A	c.(1957-1959)GAG>GAA	p.E653E	GAPVD1_uc011lzs.1_Silent_p.E653E|GAPVD1_uc004bpp.2_Silent_p.E653E|GAPVD1_uc004bpq.2_Silent_p.E653E|GAPVD1_uc004bpr.2_Silent_p.E632E|GAPVD1_uc004bps.2_Silent_p.E653E|GAPVD1_uc010mwy.1_Silent_p.E512E	NM_015635	NP_056450	Q14C86	GAPD1_HUMAN	GTPase activating protein and VPS9 domains 1	653					endocytosis|regulation of protein transport|regulation of small GTPase mediated signal transduction|signal transduction	cytosol|endosome|membrane	GTPase activating protein binding|GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CAGTGAGTGAGACCTGGAGTA	0.398													40	12					0	0	0.006230	0	0
SH2D3C	10044	broad.mit.edu	37	9	130507009	130507009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:130507009G>A	uc004bsc.2	-	7	1776	c.1634C>T	c.(1633-1635)CCC>CTC	p.P545L	SH2D3C_uc010mxo.2_Missense_Mutation_p.P385L|SH2D3C_uc004bry.2_Missense_Mutation_p.P387L|SH2D3C_uc004brz.3_Missense_Mutation_p.P191L|SH2D3C_uc011mak.1_Missense_Mutation_p.P191L|SH2D3C_uc004bsa.2_Missense_Mutation_p.P388L|SH2D3C_uc004bsb.2_Missense_Mutation_p.P477L	NM_170600	NP_733745	Q8N5H7	SH2D3_HUMAN	SH2 domain containing 3C isoform a	545					JNK cascade|small GTPase mediated signal transduction	cytoplasm|membrane	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			ovary(1)	1						TTCCACGATGGGGACTGTGAA	0.597													72	18					0	0	0.014410	0	0
CEL	1056	broad.mit.edu	37	9	135942234	135942234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:135942234C>T	uc010naa.1	+	6	704	c.688C>T	c.(688-690)CCC>TCC	p.P230S		NM_001807	NP_001798	P19835	CEL_HUMAN	carboxyl ester lipase precursor	227					cholesterol catabolic process|fatty acid catabolic process|intestinal cholesterol absorption|intestinal lipid catabolic process|pancreatic juice secretion|protein esterification	cytosol|extracellular space	acylglycerol lipase activity|carboxylesterase activity|heparin binding|sterol esterase activity|triglyceride lipase activity			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.03e-40)|Epithelial(140;3.58e-37)|GBM - Glioblastoma multiforme(294;0.00164)|READ - Rectum adenocarcinoma(205;0.196)		GACCCTCTCCCCCTACAACAA	0.642													64	18					0	0	0.014410	0	0
COL5A1	1289	broad.mit.edu	37	9	137707437	137707437	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:137707437C>T	uc004cfe.2	+	51	4412	c.4030C>T	c.(4030-4032)CCT>TCT	p.P1344S		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1344	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		AGTGGGTTTTCCTGGAGATCC	0.622													9	2					0	0	0.008291	0	0
CAMSAP1	157922	broad.mit.edu	37	9	138719414	138719414	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:138719414G>A	uc004cgr.3	-	8	1062	c.1062C>T	c.(1060-1062)CAC>CAT	p.H354H	CAMSAP1_uc004cgq.3_Silent_p.H244H|CAMSAP1_uc010nbg.2_Silent_p.H76H	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	354						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		TGCTCTTCTGGTGTAACACTG	0.527													6	21					0	0	0.001168	0	0
NOTCH1	4851	broad.mit.edu	37	9	139401833	139401833	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:139401833G>A	uc004chz.2	-	22	3567	c.3567C>T	c.(3565-3567)TCC>TCT	p.S1189S	NOTCH1_uc004cia.1_Silent_p.S419S	NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	1189	Extracellular (Potential).|EGF-like 31; calcium-binding (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		GGCAGGGGTGGGAGAGGCACT	0.687			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			6	9					0	0	0.001168	0	0
LCN15	389812	broad.mit.edu	37	9	139658369	139658369	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:139658369G>A	uc004cjd.2	-	2	214	c.189C>T	c.(187-189)ATC>ATT	p.I63I		NM_203347	NP_976222	Q6UWW0	LCN15_HUMAN	lipocalin 15 precursor	63					lipid metabolic process	extracellular region	binding|transporter activity				0						CTGTGGGCCTGATGGCCCTGG	0.647													62	53					0	0	0.014410	0	0
GRIN1	2902	broad.mit.edu	37	9	140040183	140040183	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:140040183C>T	uc004clk.2	+	3	729	c.399C>T	c.(397-399)ATC>ATT	p.I133I	GRIN1_uc004cli.1_5'UTR|GRIN1_uc004clj.1_Silent_p.I130I|GRIN1_uc004cll.2_Silent_p.I133I|GRIN1_uc004clm.2_Silent_p.I133I|GRIN1_uc004cln.2_Silent_p.I130I|GRIN1_uc004clo.2_Silent_p.I130I	NM_007327	NP_015566	Q05586	NMDZ1_HUMAN	NMDA receptor 1 isoform NR1-3 precursor	133	Extracellular (Potential).				ionotropic glutamate receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|regulation of excitatory postsynaptic membrane potential|response to ethanol|visual learning	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane|synaptic vesicle|synaptosome	calcium ion binding|calmodulin binding|extracellular-glutamate-gated ion channel activity|glutamate binding|glycine binding			skin(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;6.87e-05)|Epithelial(140;0.00095)	L-Glutamic Acid(DB00142)|Orphenadrine(DB01173)	CGCAGAGCATCCACCTGAGCT	0.697													15	17					0	0	0.007413	0	0
GRIN1	2902	broad.mit.edu	37	9	140058347	140058347	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:140058347G>A	uc004clk.2	+	18	2910	c.2580G>A	c.(2578-2580)AAG>AAA	p.K860K	GRIN1_uc004cli.1_Silent_p.K535K|GRIN1_uc004clj.1_Silent_p.K857K|GRIN1_uc004cll.2_Silent_p.K860K|GRIN1_uc004clm.2_Silent_p.K860K|GRIN1_uc004cln.2_Silent_p.K878K|GRIN1_uc004clo.2_Silent_p.K878K	NM_007327	NP_015566	Q05586	NMDZ1_HUMAN	NMDA receptor 1 isoform NR1-3 precursor	860	Cytoplasmic (Potential).				ionotropic glutamate receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|regulation of excitatory postsynaptic membrane potential|response to ethanol|visual learning	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane|synaptic vesicle|synaptosome	calcium ion binding|calmodulin binding|extracellular-glutamate-gated ion channel activity|glutamate binding|glycine binding			skin(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;6.87e-05)|Epithelial(140;0.00095)	L-Glutamic Acid(DB00142)|Orphenadrine(DB01173)	TGTGGCGGAAGAACCTGCAGG	0.652													35	26					0	0	0.003755	0	0
TUBBP5	643224	broad.mit.edu	37	9	141070111	141070111	+	Silent	SNP	T	C	C	rs139643347	by1000genomes	TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:141070111T>C	uc004com.2	+	3	270	c.9T>C	c.(7-9)TCT>TCC	p.S3S	TUBBP5_uc010ncq.2_Silent_p.S117S					RecName: Full=Putative tubulin beta-4q chain;												0						CCATGGACTCTGTGCGCTCGG	0.697													4	64					0	0	0.001984	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071110	141071110	+	Silent	SNP	A	G	G			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:141071110A>G	uc004com.2	+	4	774	c.513A>G	c.(511-513)CCA>CCG	p.P171P	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						TGCGCTTCCCAGGCCAGCTGA	0.597													3	39					0	0	0.000602	0	0
MXRA5	25878	broad.mit.edu	37	X	3235770	3235770	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chrX:3235770C>T	uc004crg.3	-	6	6109	c.5952G>A	c.(5950-5952)TGG>TGA	p.W1984*		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1984	Ig-like C2-type 4.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CAGGGAAGATCCAGGAAATTT	0.582													26	5					0	0	0.006320	0	0
BEND2	139105	broad.mit.edu	37	X	18195771	18195771	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chrX:18195771C>T	uc004cyj.3	-	10	1702	c.1548G>A	c.(1546-1548)AAG>AAA	p.K516K	BEND2_uc010nfb.2_Silent_p.K425K	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	516	BEN 1.									ovary(3)|kidney(1)|central_nervous_system(1)	5						TCAGGATTTCCTTGGAGAACA	0.423													202	20					0	0	0.014410	0	0
FAM47C	442444	broad.mit.edu	37	X	37027408	37027408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chrX:37027408G>A	uc004ddl.1	+	1	939	c.925G>A	c.(925-927)GAG>AAG	p.E309K		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	309										ovary(3)	3						TCTCTGCCTGGAGCCTCCCAA	0.592													25	25					0	0	0.004656	0	0
BMP15	9210	broad.mit.edu	37	X	50659473	50659473	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chrX:50659473G>A	uc011mnw.1	+	2	1045	c.1045G>A	c.(1045-1047)GAC>AAC	p.D349N		NM_005448	NP_005439	O95972	BMP15_HUMAN	bone morphogenetic protein 15 precursor	349					female gamete generation|granulosa cell development|ovarian follicle development	extracellular space	cytokine activity|growth factor activity			ovary(2)	2	Ovarian(276;0.236)					TCAGTTGGTGGACCAGAGTGT	0.463													54	5					0	0	0.014410	0	0
SSX7	280658	broad.mit.edu	37	X	52681972	52681972	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chrX:52681972C>T	uc004dqx.1	-	3	291	c.132G>A	c.(130-132)GAG>GAA	p.E44E		NM_173358	NP_775494	Q7RTT5	SSX7_HUMAN	synovial sarcoma, X breakpoint 7	44	KRAB-related.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding			skin(1)	1	Ovarian(276;0.236)					AGCTGATTTTCTCCAAGGATT	0.378													32	8					0	0	0.013726	0	0
SMC1A	8243	broad.mit.edu	37	X	53436194	53436194	+	Silent	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chrX:53436194G>A	uc004dsg.2	-	9	1413	c.1344C>T	c.(1342-1344)TCC>TCT	p.S448S	SMC1A_uc011moe.1_Silent_p.S426S|SMC1A_uc011mof.1_Silent_p.S214S	NM_006306	NP_006297	Q14683	SMC1A_HUMAN	structural maintenance of chromosomes 1A	448	Potential.				cell cycle checkpoint|cell division|DNA repair|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic sister chromatid cohesion|mitotic spindle organization|negative regulation of DNA endoreduplication|nuclear mRNA splicing, via spliceosome|response to radiation|signal transduction in response to DNA damage	cohesin core heterodimer|condensed chromosome kinetochore|condensed nuclear chromosome|cytoplasm|meiotic cohesin complex|nucleoplasm	ATP binding|chromatin binding|microtubule motor activity|protein heterodimerization activity			ovary(5)|central_nervous_system(1)	6						GCTCTTCTAGGGACTGCCTAC	0.542													9	0					0	0	0.006214	0	0
MED12	9968	broad.mit.edu	37	X	70341598	70341598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chrX:70341598C>T	uc004dyy.2	+	7	1232	c.1033C>T	c.(1033-1035)CCC>TCC	p.P345S	MED12_uc011mpq.1_Missense_Mutation_p.P345S|MED12_uc004dyz.2_Missense_Mutation_p.P345S|MED12_uc004dza.2_Missense_Mutation_p.P192S	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	345					androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					ACCCTCGACTCCCTTTAGTGA	0.557													36	10					0	0	0.005524	0	0
ERCC6L	54821	broad.mit.edu	37	X	71425174	71425175	+	Missense_Mutation	DNP	CC	TT	TT	rs78660817		TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chrX:71425174_71425175CC>TT	uc004eaq.1	-	2	3539_3540	c.3442_3443GG>AA	c.(3442-3444)GGA>AAA	p.G1148K	PIN4_uc004eao.1_Intron|ERCC6L_uc004eap.1_Missense_Mutation_p.G1025K	NM_017669	NP_060139	Q2NKX8	ERC6L_HUMAN	excision repair protein ERCC6-like	1148					cell division|mitotic prometaphase	condensed chromosome kinetochore|cytosol	ATP binding|DNA binding|helicase activity|protein binding			ovary(3)	3	Renal(35;0.156)					CAGTGTTTCTCCGGAAGGATCC	0.5													43	5					0	0	0.004672	0	0
KIAA2022	340533	broad.mit.edu	37	X	73962071	73962071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chrX:73962071G>A	uc004eby.2	-	3	2938	c.2321C>T	c.(2320-2322)TCT>TTT	p.S774F		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	774					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						ATGAAATTCAGATAGACGGGA	0.388													34	53					0	0	0.010818	0	0
CPXCR1	53336	broad.mit.edu	37	X	88008944	88008944	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chrX:88008944T>C	uc004efd.3	+	3	788	c.529T>C	c.(529-531)TAT>CAT	p.Y177H	CPXCR1_uc004efc.3_Missense_Mutation_p.Y177H	NM_033048	NP_149037	Q8N123	CPXCR_HUMAN	CPX chromosome region, candidate 1	177						intracellular	zinc ion binding			ovary(3)	3						AAAGCGAAAATATATAGCATG	0.428													17	13					0	0	0.006122	0	0
NXF3	56000	broad.mit.edu	37	X	102339395	102339395	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chrX:102339395G>A	uc004eju.2	-	3	297	c.226C>T	c.(226-228)CGG>TGG	p.R76W	NXF3_uc010noi.1_5'Flank|NXF3_uc011mrw.1_Missense_Mutation_p.R76W|NXF3_uc011mrx.1_5'UTR	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	76						cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						CTGCCTTTCCGATTATAGGGT	0.433													22	39					0	0	0.003954	0	0
CHRDL1	91851	broad.mit.edu	37	X	109963152	109963152	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chrX:109963152C>T	uc004eou.3	-	6	801	c.452G>A	c.(451-453)GGA>GAA	p.G151E	CHRDL1_uc004eov.2_Missense_Mutation_p.G145E|CHRDL1_uc004eow.2_Missense_Mutation_p.G150E|CHRDL1_uc010nps.2_Missense_Mutation_p.G150E|CHRDL1_uc004eot.2_Intron|CHRDL1_uc011mss.1_Intron|CHRDL1_uc004eox.3_Missense_Mutation_p.G144E	NM_001143981	NP_001137453	Q9BU40	CRDL1_HUMAN	chordin-like 1 isoform 1 precursor	144	VWFC 2.				BMP signaling pathway|cell differentiation|nervous system development|ossification	extracellular region					0						ATACACGTTTCCCTCCTGCCA	0.463													45	4					0	0	0.009718	0	0
TRPC5	7224	broad.mit.edu	37	X	111020103	111020103	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chrX:111020103C>T	uc004epl.1	-	11	3279	c.2360G>A	c.(2359-2361)AGT>AAT	p.S787N		NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	787	Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						AGCCCCACCACTGCCATCATT	0.478													146	18					0	0	0.014410	0	0
TRPC5	7224	broad.mit.edu	37	X	111155741	111155741	+	Silent	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chrX:111155741C>T	uc004epl.1	-	3	1597	c.678G>A	c.(676-678)GAG>GAA	p.E226E	TRPC5_uc004epm.1_Silent_p.E226E	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	226	Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						GCTCCTTGAGCTCCCAGCCCA	0.552													116	20					0	0	0.014410	0	0
ODZ1	10178	broad.mit.edu	37	X	123680790	123680790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chrX:123680790C>T	uc004euj.2	-	15	2649	c.2585G>A	c.(2584-2586)CGA>CAA	p.R862Q	ODZ1_uc011muj.1_Missense_Mutation_p.R861Q|ODZ1_uc010nqy.2_Missense_Mutation_p.R862Q	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	862	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						GAATTTGATTCGATCATAAAA	0.408													48	7					0	0	0.013114	0	0
CNGA2	1260	broad.mit.edu	37	X	150907032	150907032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chrX:150907032C>T	uc004fey.1	+	2	301	c.77C>T	c.(76-78)GCC>GTC	p.A26V		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	26	Cytoplasmic (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GCCATCAAGGCCAATGGCAAA	0.502													19	32					0	0	0.007413	0	0
XPR1	9213	broad.mit.edu	37	1	180849298	180849298	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr1:180849298delC	uc001goi.2	+	14	2087	c.1895delC	c.(1894-1896)GCCfs	p.A632fs	XPR1_uc009wxn.2_Frame_Shift_Del_p.A567fs	NM_004736	NP_004727	Q9UBH6	XPR1_HUMAN	xenotropic and polytropic retrovirus receptor	632	EXS.|Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity				0						ATCTCTGTGGCCCCCCTGAAC	0.507													64	40	---	---	---	---					
MLEC	9761	broad.mit.edu	37	12	121134166	121134168	+	In_Frame_Del	DEL	GAA	-	-			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr12:121134166_121134168delGAA	uc001tyy.1	+	5	848_850	c.697_699delGAA	c.(697-699)GAAdel	p.E238del		NM_014730	NP_055545	Q14165	MLEC_HUMAN	malectin precursor	238	Poly-Glu.|Lumenal (Potential).				post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	carbohydrate binding			ovary(1)	1						gaaagaagaggaagaagaagaag	0.404													8	411	---	---	---	---					
ZNF598	90850	broad.mit.edu	37	16	2049882	2049883	+	In_Frame_Ins	INS	-	TCC	TCC	rs141374045	by1000genomes	TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr16:2049882_2049883insTCC	uc002cof.1	-	11	1682_1683	c.1667_1668insGGA	c.(1666-1668)GAC>GAGGAC	p.555_556insE	ZNF598_uc002coe.1_5'UTR	NM_178167	NP_835461	Q86UK7	ZN598_HUMAN	zinc finger protein 598	555_556						intracellular	zinc ion binding			lung(1)|breast(1)	2						CCGGGCCGCCGTCCTCCTCCTC	0.703													6	13	---	---	---	---					
ICA1L	130026	broad.mit.edu	37	2	203682140	203682140	+	Splice_Site	DEL	C	-	-			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr2:203682140delC	uc002uzh.1	-	7	848	c.684_splice	c.e7+1	p.Q228_splice	ICA1L_uc002uzi.1_Splice_Site_p.Q228_splice	NM_138468	NP_612477	Q8NDH6	ICA1L_HUMAN	islet cell autoantigen 1,69kDa-like isoform 1												0						GAGGTGGGTACCTGGTAGGTA	0.383													140	126	---	---	---	---					
SLCO4A1	28231	broad.mit.edu	37	20	61303154	61303164	+	Frame_Shift_Del	DEL	CGGAGTCTTCA	-	-	rs149499822	byFrequency	TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr20:61303154_61303164delCGGAGTCTTCA	uc002ydb.1	+	12	2283_2293	c.2078_2088delCGGAGTCTTCA	c.(2077-2088)TCGGAGTCTTCAfs	p.S693fs	SLCO4A1_uc002ydc.1_Intron|SLCO4A1_uc002yde.1_Frame_Shift_Del_p.S95fs	NM_016354	NP_057438	Q96BD0	SO4A1_HUMAN	solute carrier organic anion transporter family	693_696	Cytoplasmic (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(1)	1	Breast(26;3.65e-08)		BRCA - Breast invasive adenocarcinoma(19;2.33e-06)			AAGCCCCTGTCGGAGTCTTCAGATGGCCTGG	0.640													18	106	---	---	---	---					
CLDN1	9076	broad.mit.edu	37	3	190039919	190039920	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr3:190039919_190039920insC	uc003fsh.2	-	1	296_297	c.76_77insG	c.(76-78)GCCfs	p.A26fs		NM_021101	NP_066924	O95832	CLD1_HUMAN	claudin 1	26	Helical; (Potential).				calcium-independent cell-cell adhesion|interspecies interaction between organisms	integral to plasma membrane|tight junction	identical protein binding|structural molecule activity			lung(1)	1	all_cancers(143;2.95e-10)|Ovarian(172;0.0512)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.015)		CTGGGGCAGGGCAGTGCTGACG	0.658													31	74	---	---	---	---					
RIMS1	22999	broad.mit.edu	37	6	72952079	72952079	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr6:72952079delA	uc003pga.2	+	10	2097	c.2020delA	c.(2020-2022)AACfs	p.N674fs	RIMS1_uc011dyb.1_Frame_Shift_Del_p.N300fs|RIMS1_uc003pgc.2_Frame_Shift_Del_p.N300fs|RIMS1_uc010kaq.2_Frame_Shift_Del_p.N148fs|RIMS1_uc011dyc.1_Frame_Shift_Del_p.N148fs|RIMS1_uc010kar.2_Frame_Shift_Del_p.N67fs|RIMS1_uc011dyd.1_Frame_Shift_Del_p.N133fs|RIMS1_uc003pgb.3_Frame_Shift_Del_p.N300fs|RIMS1_uc010kas.1_Frame_Shift_Del_p.N133fs	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	674	PDZ.				calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				AGAAGTTTACAACATTATTTT	0.308													4	7	---	---	---	---					
ASZ1	136991	broad.mit.edu	37	7	117003732	117003734	+	In_Frame_Del	DEL	CTA	-	-			TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr7:117003732_117003734delCTA	uc003vjb.2	-	13	1407_1409	c.1344_1346delTAG	c.(1342-1347)AGTAGA>AGA	p.S448del	ASZ1_uc011kno.1_In_Frame_Del_p.S439del|ASZ1_uc011knp.1_In_Frame_Del_p.S240del	NM_130768	NP_570124	Q8WWH4	ASZ1_HUMAN	ankyrin repeat, SAM and basic leucine zipper	448					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(10;0.00156)|all_lung(10;0.00175)		STAD - Stomach adenocarcinoma(10;0.000512)			CTTCAAAATTCTACTATTCCATG	0.320													36	33	---	---	---	---					
SNAPC4	6621	broad.mit.edu	37	9	139277995	139277997	+	In_Frame_Del	DEL	GCT	-	-	rs35266724		TCGA-EE-A2GB-06A-11D-A197-08	TCGA-EE-A2GB-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f1d9a5b7-b819-458b-aadc-c95bf555c623	50d0e663-73a7-4eed-a158-a481ba0d5349	g.chr9:139277995_139277997delGCT	uc004chh.2	-	15	1633_1635	c.1624_1626delAGC	c.(1624-1626)AGCdel	p.S542del		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	542					snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		CGTCCTCCTCgctgctgctgctg	0.473													4	5	---	---	---	---					
