Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
Unknown	0	broad.mit.edu	37	1	13418	13418	+	RNA	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:13418G>A	uc001aaa.3	+	3		c.661G>A			uc010nxq.1_Missense_Mutation_p.E61K|uc010nxr.1_RNA					Homo sapiens mRNA for DEAD/H box polypeptide 11 like 1 (DDX11L1 gene).																		CCACCACCCCGAGATCACATT	0.562													5	7					0	0	0.000157383	0	0
CDK11B	984	broad.mit.edu	37	1	1572329	1572330	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:1572329_1572330GG>AA	uc001agv.1	-	20	1840_1841	c.1729_1730CC>TT	c.(1729-1731)CCT>TTT	p.P577F	CDK11B_uc009vkj.2_Missense_Mutation_p.P234F|CDK11B_uc001ags.1_Missense_Mutation_p.P435F|CDK11B_uc001agt.1_Missense_Mutation_p.P360F|CDK11B_uc001aha.1_Missense_Mutation_p.P543F|CDK11B_uc001agw.1_Missense_Mutation_p.P532F|CDK11B_uc001agy.1_Missense_Mutation_p.P575F|CDK11B_uc001agx.1_Missense_Mutation_p.P566F|CDK11B_uc001agz.1_Missense_Mutation_p.P321F	NM_033486	NP_277021	P21127	CD11B_HUMAN	cell division cycle 2-like 1 (PITSLRE proteins)	590	Protein kinase.				apoptosis|cell proliferation|mitosis|regulation of cell growth|regulation of mRNA processing|regulation of transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity|protein binding			skin(1)	1						GGCCTTCAGAGGGGATCCGTAC	0.683													8	15					0	0	6.4e-05	0	0
AJAP1	55966	broad.mit.edu	37	1	4772234	4772234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:4772234C>T	uc001alm.1	+	2	685	c.304C>T	c.(304-306)CAC>TAC	p.H102Y	AJAP1_uc001aln.2_Missense_Mutation_p.H102Y	NM_001042478	NP_001035943	Q9UKB5	AJAP1_HUMAN	adherens junction associated protein 1	102	Extracellular (Potential).				cell adhesion	adherens junction|apical plasma membrane|basolateral plasma membrane|integral to membrane				lung(1)	1	all_cancers(77;0.071)|Ovarian(185;0.0721)	all_cancers(23;1.77e-36)|all_epithelial(116;1.26e-21)|all_lung(118;3.51e-08)|Lung NSC(185;3.47e-06)|all_neural(13;8.84e-06)|all_hematologic(16;7.61e-05)|Breast(487;0.000507)|Renal(390;0.0007)|Colorectal(325;0.00117)|Hepatocellular(190;0.0071)|Glioma(11;0.0155)|Myeloproliferative disorder(586;0.0258)|Ovarian(437;0.0409)|Lung SC(97;0.133)|Medulloblastoma(700;0.215)		Epithelial(90;3.89e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.97e-19)|GBM - Glioblastoma multiforme(42;3.71e-19)|Colorectal(212;4.57e-06)|COAD - Colon adenocarcinoma(227;0.00019)|Kidney(185;0.000969)|BRCA - Breast invasive adenocarcinoma(365;0.00122)|STAD - Stomach adenocarcinoma(132;0.00578)|KIRC - Kidney renal clear cell carcinoma(229;0.0126)|READ - Rectum adenocarcinoma(331;0.0689)		CAGACGGGCCCACAGGCCCCG	0.736													6	6					0	0	0.00116845	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887485	12887485	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:12887485G>A	uc001auk.2	-	3	568	c.372C>T	c.(370-372)CTC>CTT	p.L124L		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	124											0						GGAGGCAGGTGAGGTATTCAT	0.473													92	147					0	0	0.000781405	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12942930	12942930	+	Missense_Mutation	SNP	G	A	A	rs76269416		TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:12942930G>A	uc001aun.2	-	2	357	c.286C>T	c.(286-288)CGT>TGT	p.R96C		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	96										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CACCTGGGACGAACCCCTAGG	0.622													10	31					0	0	0.000673444	0	0
CELA2B	51032	broad.mit.edu	37	1	15813865	15813865	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:15813865G>A	uc001awl.2	+	7	750	c.725G>A	c.(724-726)GGT>GAT	p.G242D		NM_015849	NP_056933	P08218	CEL2B_HUMAN	elastase 2B preproprotein	242	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1						TCGGTCCTTGGTTGCAACTAC	0.602													38	42					0	0	0.000589545	0	0
SPEN	23013	broad.mit.edu	37	1	16255268	16255268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:16255268G>A	uc001axk.1	+	11	2737	c.2533G>A	c.(2533-2535)GAG>AAG	p.E845K	SPEN_uc010obp.1_Missense_Mutation_p.E804K	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	845					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		AAATGAGCGAGAGCAAAGCCC	0.463													20	20					0	0	0.000958276	0	0
NBPF1	55672	broad.mit.edu	37	1	16893770	16893770	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:16893770A>C	uc009vos.1	-	26	3856	c.2968T>G	c.(2968-2970)TCA>GCA	p.S990A	NBPF1_uc009vot.1_Missense_Mutation_p.S373A|NBPF1_uc001ayz.1_Missense_Mutation_p.S373A|NBPF1_uc010oce.1_Missense_Mutation_p.S644A	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	990	NBPF 6.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		AGATAACCTGAAGGAGTTGAA	0.488													10	464					0	0	0.000978159	0	0
ALDH4A1	8659	broad.mit.edu	37	1	19199413	19199413	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:19199413G>A	uc001bbb.2	-	15	1894	c.1618C>T	c.(1618-1620)CGC>TGC	p.R540C	ALDH4A1_uc010ocu.1_Missense_Mutation_p.R480C|ALDH4A1_uc001bbc.2_Missense_Mutation_p.R540C	NM_170726	NP_733844	P30038	AL4A1_HUMAN	aldehyde dehydrogenase 4A1 isoform a precursor	540					proline biosynthetic process|proline catabolic process	mitochondrial matrix	1-pyrroline-5-carboxylate dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|electron carrier activity				0		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00479)|BRCA - Breast invasive adenocarcinoma(304;3.67e-05)|Kidney(64;0.000182)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	NADH(DB00157)	GACGTCCAGCGCAGGATGTAG	0.587													21	29					0	0	0.00229938	0	0
HSPG2	3339	broad.mit.edu	37	1	22183635	22183635	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:22183635G>A	uc001bfj.2	-	44	5488	c.5448C>T	c.(5446-5448)ACC>ACT	p.T1816T	HSPG2_uc009vqd.2_Silent_p.T1817T	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	1816	Ig-like C2-type 3.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	CCATGGCTCGGGTGGGCAGTT	0.612													34	48					0	0	0.00195071	0	0
HMGCL	3155	broad.mit.edu	37	1	24143197	24143197	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:24143197G>A	uc001bib.2	-	4	360	c.316C>T	c.(316-318)CTG>TTG	p.L106L	HMGCL_uc010oec.1_Silent_p.L106L|HMGCL_uc009vqr.2_Intron|HMGCL_uc001bic.2_Silent_p.L81L|HMGCL_uc009vqs.1_Silent_p.L106L|HMGCL_uc001bid.1_Silent_p.L106L	NM_000191	NP_000182	P35914	HMGCL_HUMAN	3-hydroxy-3-methylglutaryl CoA lyase isoform 1	106					acetoacetic acid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA lyase activity|metal ion binding			central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Ovarian(437;0.00348)|Breast(348;0.0044)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.38e-24)|Colorectal(126;5.58e-08)|COAD - Colon adenocarcinoma(152;3.12e-06)|GBM - Glioblastoma multiforme(114;4.9e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000982)|KIRC - Kidney renal clear cell carcinoma(1967;0.0034)|STAD - Stomach adenocarcinoma(196;0.0128)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0856)|LUSC - Lung squamous cell carcinoma(448;0.188)		TTTGGGGTCAGGACTGGGTAG	0.502													44	67					0	0	0.000781405	0	0
SRRM1	10250	broad.mit.edu	37	1	24975472	24975472	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:24975472C>T	uc001bjm.2	+	4	581	c.357C>T	c.(355-357)ATC>ATT	p.I119I	SRRM1_uc010oel.1_Silent_p.I119I|SRRM1_uc009vrh.1_Silent_p.I80I|SRRM1_uc009vri.1_Silent_p.I36I|SRRM1_uc010oem.1_RNA	NM_005839	NP_005830	Q8IYB3	SRRM1_HUMAN	serine/arginine repetitive matrix 1	119	PWI.|Necessary for mRNA 3'-end cleavage and cytoplasmic accumulation.|Necessary for DNA and RNA-binding.				mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|nuclear matrix|nuclear speck	DNA binding|protein binding|RNA binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000946)|all_lung(284;0.00125)|Ovarian(437;0.00764)|Breast(348;0.0148)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0422)|OV - Ovarian serous cystadenocarcinoma(117;1.01e-24)|Colorectal(126;5.95e-08)|COAD - Colon adenocarcinoma(152;3.24e-06)|GBM - Glioblastoma multiforme(114;0.000148)|BRCA - Breast invasive adenocarcinoma(304;0.00177)|KIRC - Kidney renal clear cell carcinoma(1967;0.00348)|STAD - Stomach adenocarcinoma(196;0.00483)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.138)		TCGCGGGAATCCCTTCTGCTT	0.403													53	86					0	0	0.000781405	0	0
EPHA10	284656	broad.mit.edu	37	1	38230662	38230662	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:38230662C>T	uc009vvi.2	-	1	163	c.77G>A	c.(76-78)GGA>GAA	p.G26E	EPHA10_uc001cbw.3_Missense_Mutation_p.G26E	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	26						extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CCGCCAGGGTCCCAAAAGCAG	0.652													5	8					0	0	0.00116845	0	0
ZNF643	65243	broad.mit.edu	37	1	40928242	40928242	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:40928242G>A	uc001cfn.1	+	5	883	c.586G>A	c.(586-588)GAA>AAA	p.E196K	ZNF643_uc001cfl.1_Missense_Mutation_p.E94K|ZNF643_uc001cfm.1_Missense_Mutation_p.E62K	NM_023070	NP_075558	Q9UJL9	ZN643_HUMAN	zinc finger protein 643	196					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;5.25e-18)			TAATAAGCTAGAAAGCCAACA	0.418													49	49					0	0	0.000781405	0	0
CTPS	1503	broad.mit.edu	37	1	41454276	41454277	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:41454276_41454277CC>TT	uc001cgk.3	+	5	957_958	c.449_450CC>TT	c.(448-450)ACC>ATT	p.T150I	CTPS_uc010ojo.1_Intron|CTPS_uc010ojp.1_Missense_Mutation_p.T157I|CTPS_uc001cgl.3_Missense_Mutation_p.T150I|CTPS_uc010ojq.1_5'UTR	NM_001905	NP_001896	P17812	PYRG1_HUMAN	CTP synthase	150					CTP biosynthetic process|glutamine metabolic process|nucleobase, nucleoside and nucleotide interconversion|response to drug	cytosol	ATP binding|CTP synthase activity|protein binding				0	Ovarian(52;0.00579)|all_hematologic(146;0.0977)|Breast(333;0.1)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0255)			L-Glutamine(DB00130)	CTTGGTGGAACCGTGGGGGACA	0.436													40	53					0	0	6.4e-05	0	0
IPO13	9670	broad.mit.edu	37	1	44423758	44423758	+	Silent	SNP	C	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:44423758C>G	uc001ckx.2	+	8	2445	c.1650C>G	c.(1648-1650)ACC>ACG	p.T550T		NM_014652	NP_055467	O94829	IPO13_HUMAN	importin 13	550	HEAT 9.				protein import into nucleus	cytoplasm|nucleus	protein binding|protein transporter activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0821)				CTGTGTCCACCCTCAAGAAGA	0.567													3	54					0	0	0.000602214	0	0
CYP4A22	284541	broad.mit.edu	37	1	47610323	47610323	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:47610323C>T	uc001cqv.1	+	8	1050	c.999C>T	c.(997-999)ATC>ATT	p.I333I	CYP4A22_uc009vyo.2_Silent_p.I333I|CYP4A22_uc009vyp.2_Intron	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	333						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						TCTCCTGGATCCTCTATGCTC	0.592													6	19					0	0	0.00136819	0	0
USP24	23358	broad.mit.edu	37	1	55599781	55599781	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:55599781G>A	uc001cyg.3	-	27	2863	c.2863C>T	c.(2863-2865)CAG>TAG	p.Q955*		NM_015306	NP_056121	Q9UPU5	UBP24_HUMAN	ubiquitin specific protease 24	1115					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(6)|kidney(6)|breast(1)	13						AGGGCTTCCTGAATGGCTGGA	0.343													6	5					0	0	0.000157383	0	0
ZRANB2	9406	broad.mit.edu	37	1	71544186	71544186	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:71544186C>T	uc001dft.2	-	3	239	c.172G>A	c.(172-174)GAA>AAA	p.E58K	uc001dfu.1_5'Flank|ZRANB2_uc001dfs.2_Missense_Mutation_p.E58K	NM_203350	NP_976225	O95218	ZRAB2_HUMAN	zinc finger protein 265 isoform 1	58					mRNA processing|RNA splicing	nucleus	protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2						CGGCTCTTTTCTGCAAGTGTC	0.383													23	47					0	0	0.00127121	0	0
FUBP1	8880	broad.mit.edu	37	1	78430359	78430359	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:78430359G>A	uc001dii.2	-	10	898	c.809C>T	c.(808-810)TCA>TTA	p.S270L	FUBP1_uc001dih.3_RNA|FUBP1_uc010orm.1_Missense_Mutation_p.S291L	NM_003902	NP_003893	Q96AE4	FUBP1_HUMAN	far upstream element-binding protein	270					transcription from RNA polymerase II promoter	nucleus	protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding			central_nervous_system(2)|lung(1)	3						TCCTATTCTTGACCCATACTC	0.343													31	50					0	0	0.00058488	0	0
GBP4	115361	broad.mit.edu	37	1	89654350	89654350	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:89654350G>A	uc001dnb.2	-	8	1441	c.1325C>T	c.(1324-1326)TCT>TTT	p.S442F		NM_052941	NP_443173	Q96PP9	GBP4_HUMAN	guanylate binding protein 4	442						cytoplasm	GTP binding|GTPase activity				0				all cancers(265;0.00723)|Epithelial(280;0.0291)		TCCAGGAACAGAGAAAATTCC	0.448													76	83					0	0	0.000781405	0	0
HFM1	164045	broad.mit.edu	37	1	91742556	91742556	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:91742556G>C	uc001doa.3	-	31	3555	c.3455C>G	c.(3454-3456)ACA>AGA	p.T1152R	HFM1_uc009wdb.2_RNA|HFM1_uc010osu.1_Missense_Mutation_p.T831R|HFM1_uc001dob.3_Missense_Mutation_p.T340R|HFM1_uc010osv.1_Missense_Mutation_p.T836R	NM_001017975	NP_001017975	A2PYH4	HFM1_HUMAN	HFM1 protein	1152							ATP binding|ATP-dependent helicase activity|nucleic acid binding				0		all_lung(203;0.00961)|Lung NSC(277;0.0351)		all cancers(265;0.000481)|Epithelial(280;0.00863)|OV - Ovarian serous cystadenocarcinoma(397;0.126)|KIRC - Kidney renal clear cell carcinoma(1967;0.171)		ATGTCCACATGTATGTTTACT	0.328													3	100					0	0	0.00024832	0	0
HFM1	164045	broad.mit.edu	37	1	91843722	91843722	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:91843722C>T	uc001doa.3	-	11	1355	c.1255G>A	c.(1255-1257)GAA>AAA	p.E419K	HFM1_uc010osu.1_Missense_Mutation_p.E98K|HFM1_uc010osv.1_Missense_Mutation_p.E103K|HFM1_uc001doc.1_Missense_Mutation_p.E419K	NM_001017975	NP_001017975	A2PYH4	HFM1_HUMAN	HFM1 protein	419	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|nucleic acid binding				0		all_lung(203;0.00961)|Lung NSC(277;0.0351)		all cancers(265;0.000481)|Epithelial(280;0.00863)|OV - Ovarian serous cystadenocarcinoma(397;0.126)|KIRC - Kidney renal clear cell carcinoma(1967;0.171)		CCACGATTTTCATCTTTTACA	0.274													7	13					0	0	0.00198382	0	0
WDR47	22911	broad.mit.edu	37	1	109553968	109553968	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:109553968C>A	uc001dwj.2	-	5	1076	c.700G>T	c.(700-702)GGT>TGT	p.G234C	WDR47_uc001dwl.2_Missense_Mutation_p.G241C|WDR47_uc001dwi.2_Missense_Mutation_p.G234C|WDR47_uc001dwk.2_Missense_Mutation_p.G206C|WDR47_uc010ovf.1_Missense_Mutation_p.G161C	NM_001142551	NP_001136023	O94967	WDR47_HUMAN	WD repeat domain 47 isoform 3	234										ovary(1)	1		all_lung(203;0.00519)|all_epithelial(167;0.00611)|Lung NSC(277;0.00822)		Colorectal(144;0.0165)|Lung(183;0.0484)|COAD - Colon adenocarcinoma(174;0.128)|Epithelial(280;0.168)|all cancers(265;0.201)|LUSC - Lung squamous cell carcinoma(189;0.244)		CAACCATTACCACATAAGAGG	0.388													13	442					5.01169e-05	0.000270368	0.000566183	1	0
AMPD2	271	broad.mit.edu	37	1	110167981	110167982	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:110167981_110167982CC>TT	uc009wfh.1	+	3	852_853	c.310_311CC>TT	c.(310-312)CCC>TTC	p.P104F	AMPD2_uc009wfg.1_RNA|AMPD2_uc001dyb.1_Missense_Mutation_p.P23F|AMPD2_uc001dyc.1_Missense_Mutation_p.P104F|AMPD2_uc010ovr.1_Intron|AMPD2_uc010ovs.1_5'UTR|AMPD2_uc001dyd.1_5'Flank	NM_004037	NP_004028	Q01433	AMPD2_HUMAN	adenosine monophosphate deaminase 2 (isoform L)	104					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|breast(1)	3		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.0425)|all cancers(265;0.0884)|Colorectal(144;0.109)|Epithelial(280;0.111)|LUSC - Lung squamous cell carcinoma(189;0.228)		CCTGCCGGGCCCCGCCCCCTGC	0.678													15	19					0	0	6.4e-05	0	0
SLC6A17	388662	broad.mit.edu	37	1	110735292	110735292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:110735292C>T	uc009wfq.2	+	8	1732	c.1271C>T	c.(1270-1272)CCC>CTC	p.P424L	SLC6A17_uc001dze.1_Missense_Mutation_p.P22L	NM_001010898	NP_001010898	Q9H1V8	S6A17_HUMAN	solute carrier family 6, member 17	424	Extracellular (Potential).				alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity			ovary(1)|pancreas(1)	2		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		GGCCTTGACCCCTGCCTTCTG	0.607													9	15					0	0	0.000442599	0	0
MAGI3	260425	broad.mit.edu	37	1	114196509	114196509	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:114196509C>A	uc001edk.2	+	15	2679	c.2498C>A	c.(2497-2499)CCC>CAC	p.P833H	MAGI3_uc001edh.3_Missense_Mutation_p.P858H|MAGI3_uc001edi.3_Missense_Mutation_p.P833H|MAGI3_uc010owm.1_Missense_Mutation_p.P858H|MAGI3_uc001edj.2_Missense_Mutation_p.P554H	NM_001142782	NP_001136254	Q5TCQ9	MAGI3_HUMAN	membrane-associated guanylate kinase-related  3	858					apoptosis|interspecies interaction between organisms|intracellular signal transduction	nucleus|tight junction	ATP binding|guanylate kinase activity|protein binding			lung(3)|ovary(2)|central_nervous_system(1)	6	Lung SC(450;0.184)	all_cancers(81;2.34e-09)|all_epithelial(167;7.41e-09)|all_lung(203;7.13e-06)|Lung NSC(69;1.2e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		AATGGATCTCCCCGCCTGAAC	0.478													41	55					3.43241e-23	1.90174e-22	0.00222228	1	0
AMPD1	270	broad.mit.edu	37	1	115229505	115229505	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:115229505G>A	uc001efe.1	-	4	326	c.242C>T	c.(241-243)ACT>ATT	p.T81I	AMPD1_uc001eff.1_Missense_Mutation_p.T77I	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	81					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	CAAATTAACAGTCTTCCGTCC	0.388													18	31					0	0	0.000375601	0	0
NRAS	4893	broad.mit.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	T	T	rs121913254		TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:115256530G>T	uc009wgu.2	-	3	435	c.181C>A	c.(181-183)CAA>AAA	p.Q61K		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACTCTTCTTGTCCAGCTGTA	0.458	Q61K(HT1080_SOFT_TISSUE)|Q61K(OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(SKNAS_AUTONOMIC_GANGLIA)|Q61K(HCC15_LUNG)|Q61K(TYKNU_OVARY)|Q61K(SKNSH_AUTONOMIC_GANGLIA)|Q61K(HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(NCIH2087_LUNG)|Q61K(CHP212_AUTONOMIC_GANGLIA)|Q61K(HS944T_SKIN)|Q61K(M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(HS936T_SKIN)|Q61K(NCIH1299_LUNG)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			31	72					6.84511e-11	3.72544e-10	0.00058488	1	0
GABPB2	126626	broad.mit.edu	37	1	151076051	151076051	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:151076051C>T	uc001ewr.2	+	6	967	c.636C>T	c.(634-636)GCC>GCT	p.A212A	GABPB2_uc010pcp.1_Silent_p.A228A|GABPB2_uc001ews.2_Silent_p.A172A|GABPB2_uc001ewt.2_Intron	NM_144618	NP_653219	Q8TAK5	GABP2_HUMAN	GA repeat binding protein, beta 2	212					positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	protein heterodimerization activity|transcription regulatory region DNA binding				0				all cancers(107;7.17e-05)|GBM - Glioblastoma multiforme(94;0.000662)		ACCCCCATGCCTCAACAGTAC	0.443													51	33					0	0	0.000781405	0	0
HRNR	388697	broad.mit.edu	37	1	152191811	152191811	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:152191811T>G	uc001ezt.1	-	3	2370	c.2294A>C	c.(2293-2295)CAC>CCC	p.H765P		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	765	8.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTGTCGGCCGTGGCCCGAAGA	0.592													11	56					0	0	0.000978159	0	0
FLG2	388698	broad.mit.edu	37	1	152327317	152327317	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:152327317C>T	uc001ezw.3	-	3	3018	c.2945G>A	c.(2944-2946)GGA>GAA	p.G982E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	982	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGAGGATTTTCCTGAGCCTGA	0.498													128	76					0	0	0.000781405	0	0
SPRR3	6707	broad.mit.edu	37	1	152975748	152975748	+	Silent	SNP	G	A	A	rs61733607	byFrequency	TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:152975748G>A	uc001fax.3	+	3	402	c.252G>A	c.(250-252)AAG>AAA	p.K84K	SPRR3_uc001faz.3_Silent_p.K84K|SPRR3_uc001fay.2_Silent_p.K76K	NM_005416	NP_005407	Q9UBC9	SPRR3_HUMAN	small proline-rich protein 3	84	6.|14 X 8 AA approximate tandem repeats.				keratinization|peptide cross-linking|wound healing	cytoplasm	protein binding|structural molecule activity			skin(1)	1	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GTTGTACCAAGGTCCCTGAGC	0.597													7	15					0	0	0.000274275	0	0
S100A13	6284	broad.mit.edu	37	1	153598807	153598807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:153598807G>A	uc001fcf.3	-	2	301	c.142C>T	c.(142-144)CAT>TAT	p.H48Y	S100A13_uc001fcg.2_Missense_Mutation_p.H48Y|S100A13_uc009woh.2_Missense_Mutation_p.H48Y|S100A13_uc001fch.2_Missense_Mutation_p.H48Y|S100A13_uc001fci.2_Missense_Mutation_p.H48Y|S100A13_uc001fcj.2_Missense_Mutation_p.H48Y|S100A1_uc001fck.1_5'Flank|S100A1_uc001fcl.1_5'Flank	NM_001024213	NP_001019384	Q99584	S10AD_HUMAN	S100 calcium binding protein A13	48	EF-hand 1.				interleukin-1 alpha secretion|mast cell degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade	cytosol|extracellular space|nucleus|perinuclear region of cytoplasm	calcium ion binding|copper ion binding|fibroblast growth factor 1 binding|lipid binding|protein homodimerization activity|RAGE receptor binding|zinc ion binding				0	all_lung(78;1.84e-32)|Lung NSC(65;6.67e-31)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)		Amlexanox(DB01025)	TTGAGCAGATGGGGCAACTGC	0.537													51	150					0	0	0.000781405	0	0
GON4L	54856	broad.mit.edu	37	1	155732094	155732094	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:155732094G>A	uc001flz.2	-	23	4895	c.4798C>T	c.(4798-4800)CGG>TGG	p.R1600W	GON4L_uc009wrg.1_RNA|GON4L_uc001fly.1_Missense_Mutation_p.R1600W|GON4L_uc009wrh.1_Missense_Mutation_p.R1600W|GON4L_uc001fma.1_Missense_Mutation_p.R1600W|GON4L_uc001fmb.3_Missense_Mutation_p.R796W	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	1600					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					TTGCTGGCCCGAGCCCGACTT	0.542													19	11					0	0	0.00121646	0	0
OR10Z1	128368	broad.mit.edu	37	1	158576582	158576582	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:158576582G>A	uc010pio.1	+	1	354	c.354G>A	c.(352-354)ATG>ATA	p.M118I		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	118	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					TGGCTGCCATGGGCTTTGACA	0.552													11	21					0	0	0.000978159	0	0
FCRL6	343413	broad.mit.edu	37	1	159778988	159778988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:159778988G>A	uc001fud.3	+	4	599	c.557G>A	c.(556-558)GGT>GAT	p.G186D	FCRL6_uc010pix.1_3'UTR|FCRL6_uc001fuc.2_Missense_Mutation_p.G193D|FCRL6_uc009wsz.1_Intron|FCRL6_uc009wta.2_Missense_Mutation_p.G186D	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	186	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					GCCCCTGAGGGTGGCCAGGTC	0.662													29	9					0	0	0.000814825	0	0
SLAMF6	114836	broad.mit.edu	37	1	160461134	160461134	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:160461134G>A	uc001fwe.1	-	3	487	c.427C>T	c.(427-429)CAG>TAG	p.Q143*	SLAMF6_uc001fwd.1_Nonsense_Mutation_p.Q143*|SLAMF6_uc010pjh.1_Nonsense_Mutation_p.Q94*|SLAMF6_uc010pji.1_Nonsense_Mutation_p.Q32*|SLAMF6_uc010pjj.1_Nonsense_Mutation_p.Q32*|SLAMF6_uc009wtm.1_Nonsense_Mutation_p.Q94*	NM_052931	NP_443163	Q96DU3	SLAF6_HUMAN	activating NK receptor precursor	143	Extracellular (Potential).|Ig-like.					integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	all_cancers(52;1.05e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0923)			GTCATATTCTGAAATAGCTGA	0.433													30	18					0	0	0.00178596	0	0
PCP4L1	654790	broad.mit.edu	37	1	161253506	161253506	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:161253506G>A	uc001gad.2	+	2	306	c.58G>A	c.(58-60)GAA>AAA	p.E20K		NM_001102566	NP_001096036	A6NKN8	PC4L1_HUMAN	Purkinje cell protein 4 like 1	20											0	all_cancers(52;4.16e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			TGGCCAAGAGGAAAAAGGTGA	0.418													6	3					0	0	0.000157383	0	0
OLFML2B	25903	broad.mit.edu	37	1	161976240	161976240	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:161976240C>T	uc001gbu.2	-	4	994	c.570G>A	c.(568-570)AAG>AAA	p.K190K	OLFML2B_uc010pkq.1_Silent_p.K190K	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	190	Potential.									skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			GTTCATTTTCCTTGGTGAGGT	0.418													60	29					0	0	0.000781405	0	0
LRRC52	440699	broad.mit.edu	37	1	165532895	165532895	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:165532895G>A	uc001gde.2	+	2	832	c.776G>A	c.(775-777)GGA>GAA	p.G259E	LOC400794_uc001gdc.2_Intron|LOC400794_uc001gdd.2_Intron|LOC400794_uc009wvd.2_Intron	NM_001005214	NP_001005214	Q8N7C0	LRC52_HUMAN	leucine rich repeat containing 52 precursor	259	Helical; (Potential).					integral to membrane				ovary(1)	1	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)					TTCGCCGCGGGAACTGTGGCT	0.592													16	27					0	0	0.000958276	0	0
MAEL	84944	broad.mit.edu	37	1	166963267	166963267	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:166963267G>A	uc001gdy.1	+	5	555	c.484G>A	c.(484-486)GAA>AAA	p.E162K	MAEL_uc001gdz.1_Missense_Mutation_p.E131K|MAEL_uc009wvf.1_RNA	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	162					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						TATTATAGGTGAAATTCCACG	0.348													23	17					0	0	0.00047179	0	0
RCSD1	92241	broad.mit.edu	37	1	167666966	167666966	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:167666966G>A	uc001gem.2	+	6	1292	c.1105G>A	c.(1105-1107)GAA>AAA	p.E369K	RCSD1_uc010pli.1_Missense_Mutation_p.E339K	NM_052862	NP_443094	Q6JBY9	CPZIP_HUMAN	RCSD domain containing 1	369										ovary(2)|central_nervous_system(2)|skin(1)	5	all_hematologic(923;0.215)					AAAAGGCAAGGAAAAACAACA	0.627													9	4					0	0	0.000442599	0	0
DPT	1805	broad.mit.edu	37	1	168698205	168698205	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:168698205C>T	uc001gfp.2	-	1	224	c.208G>A	c.(208-210)GAC>AAC	p.D70N		NM_001937	NP_001928	Q07507	DERM_HUMAN	dermatopontin precursor	70	2 X 53-55 AA tandem repeats.|1-1.|3 X 6 AA repeats of D-R-[EQ]-W-[NQK]- [FY].|2-1.				cell adhesion	extracellular space|proteinaceous extracellular matrix				ovary(1)	1	all_hematologic(923;0.208)					CATTGTCTGTCAGAACCTTCC	0.582													14	32					0	0	0.000308642	0	0
FAM5B	57795	broad.mit.edu	37	1	177226357	177226357	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:177226357G>A	uc001glf.2	+	4	818	c.506G>A	c.(505-507)AGA>AAA	p.R169K	FAM5B_uc010pna.1_5'UTR|FAM5B_uc001glg.2_Missense_Mutation_p.R64K	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	169						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						AAACTGGGAAGAAAGACAGAG	0.542													16	55					0	0	0.000958276	0	0
CACNA1E	777	broad.mit.edu	37	1	181764090	181764090	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:181764090G>A	uc001gow.2	+	45	6154	c.5989G>A	c.(5989-5991)GAG>AAG	p.E1997K	CACNA1E_uc009wxs.2_Missense_Mutation_p.E1885K|CACNA1E_uc009wxt.2_Missense_Mutation_p.E1266K	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2040	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						ATTCTCCATGGAGCGAAGCAG	0.522													36	23					0	0	0.00170553	0	0
CACNA1E	777	broad.mit.edu	37	1	181767811	181767811	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:181767811C>T	uc001gow.2	+	47	6819	c.6654C>T	c.(6652-6654)GGC>GGT	p.G2218G	CACNA1E_uc009wxs.2_Silent_p.G2106G|CACNA1E_uc009wxt.2_Silent_p.G1487G	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2261	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CTAGCCTGGGCCGTTCCAACA	0.672													5	14					0	0	0.000602214	0	0
C1orf26	54823	broad.mit.edu	37	1	185143988	185143988	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:185143988C>T	uc001grg.3	+	5	823	c.709C>T	c.(709-711)CCT>TCT	p.P237S	C1orf26_uc001grh.3_Missense_Mutation_p.P237S	NM_001105518	NP_001098988	Q5T5J6	SWT1_HUMAN	hypothetical protein LOC54823	237											0						TTTCAAAATCCCTATAAAATC	0.353													84	42					0	0	0.000781405	0	0
HMCN1	83872	broad.mit.edu	37	1	186024788	186024788	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:186024788T>A	uc001grq.1	+	45	7355	c.7126T>A	c.(7126-7128)TAT>AAT	p.Y2376N		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	2376	Ig-like C2-type 21.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TGACAAAAAATATGACTTAAG	0.428													24	7					0	0	0.000878237	0	0
HMCN1	83872	broad.mit.edu	37	1	186062349	186062349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:186062349C>T	uc001grq.1	+	65	10200	c.9971C>T	c.(9970-9972)CCC>CTC	p.P3324L		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	3324	Ig-like C2-type 31.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						GCTACTAATCCCGCTGGAGAA	0.393													13	13					0	0	0.00185496	0	0
CRB1	23418	broad.mit.edu	37	1	197411332	197411332	+	Silent	SNP	G	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:197411332G>T	uc001gtz.2	+	11	4050	c.3915G>T	c.(3913-3915)CCG>CCT	p.P1305P	CRB1_uc010poz.1_Silent_p.P1281P|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Silent_p.P1193P|CRB1_uc010ppb.1_Silent_p.P769P|CRB1_uc010ppd.1_Silent_p.P786P|CRB1_uc001gub.1_3'UTR	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1305	Extracellular (Potential).|EGF-like 19; calcium-binding (Potential).				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding	p.P1305A(1)		ovary(5)|skin(3)|large_intestine(1)	9						CCTCTGATCCGTGTGTCAATG	0.493													37	96					3.61848e-18	1.99049e-17	0.00170553	1	0
LAD1	3898	broad.mit.edu	37	1	201356012	201356012	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:201356012C>T	uc001gwm.2	-	3	712	c.477G>A	c.(475-477)GAG>GAA	p.E159E	LAD1_uc009wzu.1_Silent_p.E181E	NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	159						basement membrane	structural molecule activity				0						CCACCAAGCTCTCCTCCTCCA	0.587													51	35					0	0	0.000781405	0	0
GPR37L1	9283	broad.mit.edu	37	1	202096948	202096948	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:202096948C>T	uc001gxj.2	+	2	773	c.710C>T	c.(709-711)CCC>CTC	p.P237L		NM_004767	NP_004758	O60883	ETBR2_HUMAN	G-protein coupled receptor 37 like 1 precursor	237	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			ovary(1)|central_nervous_system(1)	2						AGCACCCTGCCCAAGGTGAGG	0.632													41	23					0	0	0.00170553	0	0
MFSD4	148808	broad.mit.edu	37	1	205549978	205549978	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:205549978C>T	uc001hcv.3	+	3	705	c.619C>T	c.(619-621)CCA>TCA	p.P207S	MFSD4_uc010prk.1_Intron|MFSD4_uc010prl.1_RNA|MFSD4_uc010prm.1_Missense_Mutation_p.P152S	NM_181644	NP_857595	Q8N468	MFSD4_HUMAN	major facilitator superfamily domain containing	207					transmembrane transport	integral to membrane				skin(2)|central_nervous_system(1)	3	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			CCAGACGTTCCCAGGGCTGAC	0.622													25	15					0	0	0.00047179	0	0
IRF6	3664	broad.mit.edu	37	1	209974644	209974644	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:209974644G>A	uc001hhq.1	-	3	378	c.115C>T	c.(115-117)CCC>TCC	p.P39S	IRF6_uc010psm.1_Intron|IRF6_uc009xct.1_Missense_Mutation_p.P39S	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	39	IRF tryptophan pentad repeat.		P -> A (in VWS).		cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		TGTTTCCAGGGAATCTGGAAG	0.512										HNSCC(57;0.16)			29	85					0	0	0.001512	0	0
C1orf58	148362	broad.mit.edu	37	1	222904846	222904846	+	Silent	SNP	C	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:222904846C>A	uc001hnq.1	+	12	1532	c.1137C>A	c.(1135-1137)CCC>CCA	p.P379P	C1orf58_uc010put.1_Silent_p.P347P|C1orf58_uc010puu.1_Intron|C1orf58_uc010puv.1_Silent_p.P347P|uc001hnr.1_Intron|uc001hns.1_5'Flank	NM_144695	NP_653296	Q5VW32	BROX_HUMAN	Bro1-domain-containing protein	379	BRO1.					membrane					0				GBM - Glioblastoma multiforme(131;0.0667)		CCAAAAGACCCAAGGATGACA	0.353													13	246					0.00185496	0.00983448	0.00185496	1	0
SUSD4	55061	broad.mit.edu	37	1	223438088	223438088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:223438088C>T	uc001hnx.2	-	4	1242	c.608G>A	c.(607-609)GGG>GAG	p.G203E	SUSD4_uc001hny.3_Missense_Mutation_p.G203E|SUSD4_uc010puw.1_Missense_Mutation_p.G43E|SUSD4_uc001hnz.2_Missense_Mutation_p.G203E|SUSD4_uc010pux.1_Missense_Mutation_p.G132E	NM_017982	NP_060452	Q5VX71	SUSD4_HUMAN	sushi domain containing 4 isoform a	203	Sushi 3.|Extracellular (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(131;0.0611)		GATCACAGTCCCCACCGGGAA	0.512													41	25					0	0	0.000589545	0	0
LBR	3930	broad.mit.edu	37	1	225600318	225600318	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:225600318C>G	uc001hoy.2	-	8	1065	c.922G>C	c.(922-924)GTC>CTC	p.V308L	LBR_uc001hoz.2_Missense_Mutation_p.V308L|LBR_uc001hpa.1_Missense_Mutation_p.V308L	NM_002296	NP_002287	Q14739	LBR_HUMAN	lamin B receptor	308	Helical; (Potential).				cholesterol biosynthetic process	integral to nuclear inner membrane	chromo shadow domain binding|delta14-sterol reductase activity|DNA binding|lamin binding|receptor activity			ovary(1)|skin(1)	2	Breast(184;0.165)			GBM - Glioblastoma multiforme(131;0.117)		GTTCCGATGACTGCAGATGTC	0.388													3	90					0	0	6.4e-05	0	0
ZNF695	57116	broad.mit.edu	37	1	247151498	247151499	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:247151498_247151499GG>AA	uc009xgu.2	-	4	463_464	c.318_319CC>TT	c.(316-321)TTCCAA>TTTTAA	p.Q107*	ZNF695_uc001ica.2_RNA|ZNF695_uc001icb.1_RNA|ZNF695_uc009xgt.1_RNA|ZNF695_uc001ibx.2_Nonsense_Mutation_p.Q107*|ZNF695_uc001iby.2_Intron|ZNF695_uc001icc.2_Nonsense_Mutation_p.Q95*	NM_020394	NP_065127	Q8IW36	ZN695_HUMAN	zinc finger protein SBZF3	107					regulation of transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0	all_cancers(71;4.01e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			ATCACTTTTTGGAATGAAACTT	0.376													118	66					0	0	6.4e-05	0	0
NLRP3	114548	broad.mit.edu	37	1	247588892	247588892	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:247588892G>C	uc001icr.2	+	5	2285	c.2147G>C	c.(2146-2148)TGT>TCT	p.C716S	NLRP3_uc001ics.2_Missense_Mutation_p.C716S|NLRP3_uc001icu.2_Missense_Mutation_p.C716S|NLRP3_uc001icw.2_Missense_Mutation_p.C716S|NLRP3_uc001icv.2_Missense_Mutation_p.C716S|NLRP3_uc010pyw.1_Missense_Mutation_p.C714S|NLRP3_uc001ict.1_Missense_Mutation_p.C714S	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	716					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			CATGCTGCCTGTTCTCATGGG	0.522													10	41					0	0	0.000978159	0	0
OR2AK2	391191	broad.mit.edu	37	1	248129009	248129009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr1:248129009G>A	uc010pzd.1	+	1	376	c.376G>A	c.(376-378)GAA>AAA	p.E126K	OR2L13_uc001ids.2_Intron	NM_001004491	NP_001004491	Q8NG84	O2AK2_HUMAN	olfactory receptor, family 2, subfamily AK,	126	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			TGGTGGAACTGAAGCCCTTCT	0.443													40	144					0	0	0.000509022	0	0
USP6NL	9712	broad.mit.edu	37	10	11505081	11505081	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr10:11505081G>A	uc001ikt.3	-	15	2167	c.1846C>T	c.(1846-1848)CCG>TCG	p.P616S	USP6NL_uc001iks.1_Missense_Mutation_p.P633S	NM_014688	NP_055503	Q92738	US6NL_HUMAN	USP6 N-terminal like isoform 1	616						intracellular	Rab GTPase activator activity				0						AGCTGGGACGGATATCGTGCA	0.527													17	9					0	0	0.000958276	0	0
GPR158	57512	broad.mit.edu	37	10	25701363	25701363	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr10:25701363C>T	uc001isj.2	+	4	1356	c.1296C>T	c.(1294-1296)TTC>TTT	p.F432F		NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	432	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						TGCTCGACTTCGTTAGCATGC	0.478													29	13					0	0	0.00111076	0	0
SVIL	6840	broad.mit.edu	37	10	29775148	29775148	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr10:29775148G>A	uc001iut.1	-	26	5398	c.4645C>T	c.(4645-4647)CCA>TCA	p.P1549S	LOC387647_uc001iuq.1_Intron|SVIL_uc010qdw.1_Missense_Mutation_p.P463S|SVIL_uc001iuu.1_Missense_Mutation_p.P1123S|SVIL_uc009xlc.2_Missense_Mutation_p.P341S	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	1549	Interaction with NEB.				cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				TCTTCTTTTGGGTCTCCAGCA	0.393													28	8					0	0	0.00178596	0	0
C10orf71	118461	broad.mit.edu	37	10	50531295	50531295	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr10:50531295C>T	uc010qgp.1	+	3	1044	c.705C>T	c.(703-705)TTC>TTT	p.F235F		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	235											0						CCAGCAGCTTCCTCCCAGCAG	0.567													10	0					0	0	0.000673444	0	0
PTEN	5728	broad.mit.edu	37	10	89717741	89717741	+	Nonsense_Mutation	SNP	G	T	T	rs121909228		TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr10:89717741G>T	uc001kfb.2	+	8	1797	c.766G>T	c.(766-768)GAG>TAG	p.E256*		NM_000314	NP_000305	P60484	PTEN_HUMAN	phosphatase and tensin homolog	256	C2 tensin-type.				activation of mitotic anaphase-promoting complex activity|apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of cyclin-dependent protein kinase activity involved in G1/S|negative regulation of focal adhesion assembly|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	anaphase-promoting complex binding|enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.R55fs*1(4)|p.N212fs*1(2)|p.Y27fs*1(2)|p.E256K(2)|p.G165_*404del(1)|p.?(1)|p.G165_K342del(1)|p.D252_K263>AKE(1)|p.K254fs*39(1)|p.E256*(1)		endometrium(831)|central_nervous_system(657)|skin(121)|haematopoietic_and_lymphoid_tissue(101)|large_intestine(99)|prostate(97)|breast(73)|lung(65)|ovary(58)|thyroid(29)|stomach(29)|upper_aerodigestive_tract(25)|cervix(24)|liver(20)|vulva(17)|kidney(15)|NS(14)|soft_tissue(13)|urinary_tract(12)|eye(8)|pancreas(6)|salivary_gland(5)|bone(5)|biliary_tract(4)|autonomic_ganglia(2)|meninges(2)|testis(1)|oesophagus(1)	2334		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)		TATCAAAGTAGAGTTCTTCCA	0.373		31	D|Mis|N|F|S		glioma| prostate|endometrial	harmartoma|glioma| prostate|endometrial			Proteus_syndrome|Cowden_syndrome|Juvenile_Polyposis|Hereditary_Mixed_Polyposis_Syndrome_type_1|Bannayan-Riley-Ruvalcaba_syndrome	HNSCC(9;0.0022)|TCGA GBM(2;<1E-08)|TSP Lung(26;0.18)			10	11					0.000978159	0.00523102	0.000978159	1	0
LIPF	8513	broad.mit.edu	37	10	90429622	90429622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr10:90429622C>T	uc001kfg.1	+	5	617	c.451C>T	c.(451-453)CCA>TCA	p.P151S	LIPF_uc001kfh.1_Missense_Mutation_p.P128S|LIPF_uc010qmt.1_Missense_Mutation_p.P161S|LIPF_uc010qmu.1_Missense_Mutation_p.P118S	NM_004190	NP_004181	P07098	LIPG_HUMAN	lipase, gastric precursor	151					lipid catabolic process|triglyceride metabolic process	extracellular region	lipid binding|triglyceride lipase activity				0		Colorectal(252;0.0161)		Colorectal(12;3.91e-05)|COAD - Colon adenocarcinoma(12;5.43e-05)		ATATGACCTTCCAGCCACAAT	0.383													36	14					0	0	0.00128727	0	0
IDE	3416	broad.mit.edu	37	10	94291595	94291595	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr10:94291595C>A	uc001kia.2	-	4	647	c.571G>T	c.(571-573)GAG>TAG	p.E191*		NM_004969	NP_004960	P14735	IDE_HUMAN	insulin-degrading enzyme isoform 1 precursor	191					beta-amyloid metabolic process|bradykinin catabolic process|interspecies interaction between organisms|sex differentiation	cell surface|extracellular space|soluble fraction	ATP binding|metalloendopeptidase activity|protein homodimerization activity|signal transducer activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3					Bacitracin(DB00626)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	ACATTCTTCTCATGTTCTGAA	0.408													8	176					0.000442599	0.00237521	0.000442599	1	0
CYP2C19	1557	broad.mit.edu	37	10	96534969	96534969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr10:96534969G>A	uc010qnz.1	+	2	323	c.323G>A	c.(322-324)AGA>AAA	p.R108K	CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_Missense_Mutation_p.R86K	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	108					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	AGAGCTAACAGAGGATTTGGT	0.517													20	8					0	0	0.00047179	0	0
RRP12	23223	broad.mit.edu	37	10	99156022	99156022	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr10:99156022G>A	uc001knf.2	-	3	545	c.406C>T	c.(406-408)CGC>TGC	p.R136C	RRP12_uc010qou.1_Missense_Mutation_p.R136C|RRP12_uc009xvn.2_Missense_Mutation_p.R136C	NM_015179	NP_055994	Q5JTH9	RRP12_HUMAN	ribosomal RNA processing 12 homolog isoform 1	136						integral to membrane|nuclear membrane|nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3		Colorectal(252;0.162)		Epithelial(162;2.72e-09)|all cancers(201;1.76e-07)		CCCTGGGAGCGAATCACCTCA	0.562													17	5					0	0	0.00152264	0	0
WNT8B	7479	broad.mit.edu	37	10	102222964	102222964	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr10:102222964C>T	uc001krb.2	+	1	153	c.39C>T	c.(37-39)TTC>TTT	p.F13F		NM_003393	NP_003384	Q93098	WNT8B_HUMAN	wingless-type MMTV integration site family,	13					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|determination of dorsal identity|endoderm development|eye development|gastrulation|hypothalamus development|negative regulation of anterior neural cell fate commitment of the neural plate by Wnt receptor signaling pathway|otic placode formation|positive regulation of gene expression|response to estradiol stimulus|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			ovary(1)|breast(1)|large_intestine(1)|skin(1)	4		Colorectal(252;0.117)		Epithelial(162;1.87e-10)|all cancers(201;1.64e-08)		TCTGTCTTTTCACCTGTGTCC	0.438													19	9					0	0	0.00047179	0	0
GBF1	8729	broad.mit.edu	37	10	104128020	104128020	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr10:104128020G>A	uc001kux.1	+	22	2925	c.2685G>A	c.(2683-2685)CGG>CGA	p.R895R	GBF1_uc001kuy.1_Silent_p.R895R|GBF1_uc001kuz.1_Silent_p.R896R	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	895					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		GCTTGGTTCGGGAGAACTATG	0.517													35	12					0	0	0.000692331	0	0
DMBT1	1755	broad.mit.edu	37	10	124402887	124402887	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr10:124402887C>T	uc001lgk.1	+	53	7321	c.7215C>T	c.(7213-7215)CCC>CCT	p.P2405P	DMBT1_uc001lgl.1_Silent_p.P2395P|DMBT1_uc001lgm.1_Silent_p.P1777P|DMBT1_uc009xzz.1_Silent_p.P2404P|DMBT1_uc010qtx.1_Silent_p.P1125P|DMBT1_uc009yab.1_Silent_p.P1108P|DMBT1_uc009yac.1_Silent_p.P699P	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2405				P -> A (in Ref. 5; CAC44122).	epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TGCAGACCCCCCCACGCCGAG	0.647													10	1					0	0	0.000442599	0	0
DOCK1	1793	broad.mit.edu	37	10	128841377	128841377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr10:128841377C>T	uc001ljt.2	+	21	2151	c.2087C>T	c.(2086-2088)CCT>CTT	p.P696L	DOCK1_uc010qun.1_Missense_Mutation_p.P717L	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	696					apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		CATTTTAATCCTGTTTTGGAA	0.289													12	4					0	0	0.000308642	0	0
TUBGCP2	10844	broad.mit.edu	37	10	135103431	135103431	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr10:135103431G>A	uc001lmg.1	-	9	1614	c.1257C>T	c.(1255-1257)ATC>ATT	p.I419I	TUBGCP2_uc001lmf.1_Silent_p.I12I|TUBGCP2_uc010qvc.1_Silent_p.I447I|TUBGCP2_uc009ybk.1_Silent_p.I419I|TUBGCP2_uc010qvd.1_Silent_p.I289I|TUBGCP2_uc001lmh.1_RNA	NM_006659	NP_006650	Q9BSJ2	GCP2_HUMAN	tubulin, gamma complex associated protein 2	419					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytoplasmic microtubule|cytosol|spindle pole	protein binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.87e-06)|all cancers(32;8.98e-06)|Epithelial(32;1.15e-05)		AATCCTCCTGGATCCTCTCCT	0.572													15	5					0	0	0.00152264	0	0
MUC2	4583	broad.mit.edu	37	11	1097747	1097747	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:1097747C>T	uc001lsx.1	+	39	13953	c.13926C>T	c.(13924-13926)TCC>TCT	p.S4642S		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4642	VWFD 4.					inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	AGATCGTCTCCAACTGTGAGG	0.642													15	13					0	0	0.000308642	0	0
MUC2	4583	broad.mit.edu	37	11	1097792	1097792	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:1097792C>T	uc001lsx.1	+	39	13998	c.13971C>T	c.(13969-13971)TCC>TCT	p.S4657S		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4657	VWFD 4.					inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	ACGACCCCTCCAAGCCACACT	0.657													4	10					0	0	0.00024832	0	0
MUC5B	727897	broad.mit.edu	37	11	1263828	1263828	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:1263828C>G	uc009ycr.1	+	47	7923	c.7797C>G	c.(7795-7797)ATC>ATG	p.I2599M	MUC5B_uc001ltb.2_Missense_Mutation_p.I1909M	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	1906	7 X Cys-rich subdomain repeats.|11 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CGACCTGGATCCTCACAAAGC	0.637													15	36					0	0	0.000958276	0	0
MUC5B	727897	broad.mit.edu	37	11	1268882	1268882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:1268882C>T	uc009ycr.1	+	50	12482	c.12356C>T	c.(12355-12357)TCT>TTT	p.S4119F	MUC5B_uc001ltb.2_Missense_Mutation_p.S3594F	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	3591	7 X Cys-rich subdomain repeats.|Cys-rich subdomain 6.|Thr-rich.			Missing (in Ref. 6; AAB61398).	cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CCGGGGCCCTCTGGCGGGGAC	0.682													15	25					0	0	0.000958276	0	0
MUC5B	727897	broad.mit.edu	37	11	1269208	1269208	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:1269208G>A	uc009ycr.1	+	50	12808	c.12682G>A	c.(12682-12684)GCC>ACC	p.A4228T	MUC5B_uc001ltb.2_Missense_Mutation_p.A3703T	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	3700	7 X Cys-rich subdomain repeats.|11 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GACCACAACAGCCACTACGAC	0.652													66	54					0	0	0.000781405	0	0
MUC5B	727897	broad.mit.edu	37	11	1273722	1273722	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:1273722C>T	uc009ycr.1	+	53	16105	c.15979C>T	c.(15979-15981)CCT>TCT	p.P5327S	MUC5B_uc001ltb.2_Missense_Mutation_p.P5008S	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	5005					cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CTCCCCTGCCCCTGGCTGTGA	0.692													4	15					0	0	0.00024832	0	0
ZNF195	7748	broad.mit.edu	37	11	3381483	3381483	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:3381483G>A	uc001lxt.2	-	6	933	c.755C>T	c.(754-756)TCC>TTC	p.S252F	uc001lxr.2_5'Flank|ZNF195_uc001lxv.2_Missense_Mutation_p.S229F|ZNF195_uc001lxs.2_Missense_Mutation_p.S180F|ZNF195_uc010qxr.1_Missense_Mutation_p.S233F|ZNF195_uc009ydz.2_Missense_Mutation_p.S207F|ZNF195_uc001lxu.2_Missense_Mutation_p.S184F	NM_001130520	NP_001123992	O14628	ZN195_HUMAN	zinc finger protein 195 isoform 1	252	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Medulloblastoma(188;0.00106)|Breast(177;0.00328)|all_neural(188;0.00681)|Ovarian(85;0.00965)		BRCA - Breast invasive adenocarcinoma(625;0.0361)|LUSC - Lung squamous cell carcinoma(625;0.2)		CATTTGAAAGGATTTGCCACA	0.308													15	22					0	0	0.00074312	0	0
OR51G1	79324	broad.mit.edu	37	11	4944919	4944919	+	Silent	SNP	A	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:4944919A>G	uc010qyr.1	-	1	651	c.651T>C	c.(649-651)TTT>TTC	p.F217F		NM_001005237	NP_001005237	Q8NGK1	O51G1_HUMAN	olfactory receptor, family 51, subfamily G,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.58e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		CGTATGAGAGAAAGATGAGCA	0.547													8	10					0	0	0.000274275	0	0
OR10A6	390093	broad.mit.edu	37	11	7949881	7949881	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:7949881G>A	uc010rbh.1	-	1	329	c.329C>T	c.(328-330)GCT>GTT	p.A110V		NM_001004461	NP_001004461	Q8NH74	O10A6_HUMAN	olfactory receptor, family 10, subfamily A,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AAAACATTCAGCCCCACCAAA	0.388													4	8					0	0	0.00024832	0	0
OR10A3	26496	broad.mit.edu	37	11	7960996	7960996	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:7960996C>T	uc010rbi.1	-	1	72	c.72G>A	c.(70-72)CAG>CAA	p.Q24Q		NM_001003745	NP_001003745	P58181	O10A3_HUMAN	olfactory receptor, family 10, subfamily A,	24	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AGAGCTGCACCTGGAGCTCAG	0.408													7	16					0	0	0.00198382	0	0
MRVI1	10335	broad.mit.edu	37	11	10615060	10615060	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:10615060G>A	uc010rcc.1	-	17	2540	c.2154C>T	c.(2152-2154)TCC>TCT	p.S718S	uc001miu.2_Intron|MRVI1_uc001miw.2_Silent_p.S709S|MRVI1_uc010rcb.1_Silent_p.S710S|MRVI1_uc009ygb.1_Silent_p.S403S|MRVI1_uc001mix.2_Silent_p.S403S|MRVI1_uc001miz.2_Silent_p.S627S|MRVI1_uc009ygc.1_Silent_p.S627S|MRVI1_uc010rcd.1_Silent_p.S512S|MRVI1_uc009ygd.1_Silent_p.S403S|MRVI1_uc010rce.1_RNA	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	691					platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		AGGAGGGAATGGATGATGAGC	0.517													12	20					0	0	0.000219431	0	0
LGR4	55366	broad.mit.edu	37	11	27397858	27397858	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:27397858G>A	uc001mrj.3	-	13	1654	c.1169C>T	c.(1168-1170)TCT>TTT	p.S390F	LGR4_uc001mrk.3_Missense_Mutation_p.S366F	NM_018490	NP_060960	Q9BXB1	LGR4_HUMAN	leucine-rich repeat-containing G protein-coupled	390	LRR 14.|Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			ovary(1)	1						AATCCTTAGAGATATCAGGCC	0.239													39	55					0	0	0.000781405	0	0
KIF18A	81930	broad.mit.edu	37	11	28080511	28080511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:28080511G>A	uc001msc.2	-	13	2092	c.1910C>T	c.(1909-1911)ACC>ATC	p.T637I		NM_031217	NP_112494	Q8NI77	KI18A_HUMAN	kinesin family member 18A	637					blood coagulation|microtubule depolymerization|microtubule-based movement|mitotic metaphase plate congression|mitotic prometaphase|protein transport	caveola|cytosol|kinetochore microtubule|microtubule organizing center|nucleus|ruffle	actin binding|ATP binding|microtubule plus-end binding|plus-end-directed microtubule motor activity|tubulin-dependent ATPase activity|ubiquitin binding			ovary(2)	2						TTGTGGAAAGGTCATAAGAAC	0.368													28	35					0	0	0.000491102	0	0
EXT2	2132	broad.mit.edu	37	11	44193160	44193160	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:44193160G>A	uc001mxz.2	+	8	1508	c.1174_splice	c.e8-1	p.A392_splice	EXT2_uc010rfo.1_Splice_Site_p.A420_splice|EXT2_uc001mxy.2_Splice_Site_p.A405_splice|EXT2_uc009ykt.2_Intron|EXT2_uc001mya.2_Splice_Site_p.A425_splice	NM_207122	NP_997005	Q93063	EXT2_HUMAN	exostosin 2 isoform 2						glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction	Golgi membrane|integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity			lung(2)|breast(2)|skin(1)	5						TTTCTTTATAGGCCCGGTGGT	0.438			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses				32	40					0	0	0.000692331	0	0
OR4C12	283093	broad.mit.edu	37	11	50003317	50003317	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:50003317G>A	uc010ria.1	-	1	721	c.721C>T	c.(721-723)CAC>TAC	p.H241Y		NM_001005270	NP_001005270	Q96R67	OR4CC_HUMAN	olfactory receptor, family 4, subfamily C,	241	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						ACTATGATGTGAGAAATACAG	0.403													8	9					0	0	0.000157383	0	0
OR5F1	338674	broad.mit.edu	37	11	55761980	55761980	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:55761980C>T	uc010riv.1	-	1	122	c.122G>A	c.(121-123)GGA>GAA	p.G41E		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					CCCGAGATTTCCCAGTACTGT	0.428													9	12					0	0	0.000274275	0	0
OR10Q1	219960	broad.mit.edu	37	11	57995461	57995461	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:57995461C>T	uc010rkd.1	-	1	887	c.887G>A	c.(886-888)AGC>AAC	p.S296N		NM_001004471	NP_001004471	Q8NGQ4	O10Q1_HUMAN	olfactory receptor, family 10, subfamily Q,	296	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(21;0.0589)				GTTCCTAAGGCTGTAAAGCAA	0.547													31	54					0	0	0.00209593	0	0
OR4D9	390199	broad.mit.edu	37	11	59282431	59282431	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:59282431G>C	uc010rkv.1	+	1	46	c.46G>C	c.(46-48)GGA>CGA	p.G16R		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TACCTTCCTGGGAATTACTCA	0.393													3	50					0	0	6.4e-05	0	0
OR4D9	390199	broad.mit.edu	37	11	59283128	59283128	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:59283128C>T	uc010rkv.1	+	1	743	c.743C>T	c.(742-744)ACC>ATC	p.T248I		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	248	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACCGTGGTGACCCTGCATTTC	0.557													26	47					0	0	0.000720815	0	0
GIF	2694	broad.mit.edu	37	11	59610057	59610057	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:59610057C>T	uc001noi.2	-	4	419	c.371_splice	c.e4-1	p.S124_splice	GIF_uc010rkz.1_3'UTR	NM_005142	NP_005133	P27352	IF_HUMAN	gastric intrinsic factor (vitamin B synthesis)						cobalamin metabolic process|cobalamin transport|cobalt ion transport	apical plasma membrane|endosome|extracellular space|microvillus	cobalamin binding			ovary(1)|liver(1)	2						GCGTTGGGGCCTCCGAAGGGG	0.517													9	11					0	0	0.000274275	0	0
AHNAK	79026	broad.mit.edu	37	11	62288300	62288300	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:62288300C>T	uc001ntl.2	-	5	13889	c.13589G>A	c.(13588-13590)GGA>GAA	p.G4530E	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	4530					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TATCTTAGGTCCTTTCAAATT	0.433													31	26					0	0	0.000692331	0	0
BRMS1	25855	broad.mit.edu	37	11	66108330	66108330	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:66108330C>T	uc001ohp.1	-	6	597	c.450G>A	c.(448-450)CTG>CTA	p.L150L	BRMS1_uc001oho.1_Silent_p.L150L|BRMS1_uc009yre.2_5'UTR	NM_015399	NP_056214	Q9HCU9	BRMS1_HUMAN	breast cancer metastasis suppressor 1 isoform 1	150					apoptosis|negative regulation of anti-apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of transcription, DNA-dependent|positive regulation of anoikis|positive regulation of protein deacetylation|transcription, DNA-dependent	cytoplasm|nucleus	NF-kappaB binding				0						CATAGAGCAGCAGCTTCTCAC	0.632													6	12					0	0	0.00116845	0	0
PDE2A	5138	broad.mit.edu	37	11	72297142	72297142	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:72297142T>G	uc010rrc.1	-	14	1397	c.1154A>C	c.(1153-1155)AAG>ACG	p.K385T	PDE2A_uc001oso.2_Missense_Mutation_p.K364T|PDE2A_uc010rra.1_Missense_Mutation_p.K378T|PDE2A_uc001osn.2_Missense_Mutation_p.K129T|PDE2A_uc010rrb.1_Missense_Mutation_p.K376T|PDE2A_uc010rrd.1_Missense_Mutation_p.K270T	NM_002599	NP_002590	O00408	PDE2A_HUMAN	phosphodiesterase 2A isoform 1	385					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(2)|breast(1)|skin(1)	4			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	TTTCTGTTCCTTCTGGAAGGC	0.597											OREG0021196	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	46	57					0	0	0.000781405	0	0
KIAA1377	57562	broad.mit.edu	37	11	101849153	101849153	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:101849153C>T	uc001pgm.2	+	7	3191	c.2921C>T	c.(2920-2922)CCT>CTT	p.P974L	KIAA1377_uc001pgn.2_Missense_Mutation_p.P930L|KIAA1377_uc010run.1_Missense_Mutation_p.P775L	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	974							protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		AGACAAAACCCTGGATCTGTA	0.333													46	62					0	0	0.000781405	0	0
PDGFD	80310	broad.mit.edu	37	11	103818392	103818392	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:103818392A>C	uc001phq.2	-	4	943	c.571T>G	c.(571-573)TCA>GCA	p.S191A	PDGFD_uc001php.2_Missense_Mutation_p.S185A	NM_025208	NP_079484	Q9GZP0	PDGFD_HUMAN	platelet derived growth factor D isoform 1	191					positive regulation of cell division	endoplasmic reticulum lumen|extracellular region|Golgi membrane	growth factor activity			upper_aerodigestive_tract(1)|large_intestine(1)	2		Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Melanoma(852;0.0563)|all_neural(303;0.165)		BRCA - Breast invasive adenocarcinoma(274;0.00136)|Epithelial(105;0.111)		TTACTTACTGAAATAGAGCTT	0.453													11	17					0	0	0.00136819	0	0
ZBTB16	7704	broad.mit.edu	37	11	113934823	113934823	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:113934823G>A	uc001pop.2	+	2	1065	c.801G>A	c.(799-801)GGG>GGA	p.G267G	ZBTB16_uc001poo.1_Silent_p.G267G|ZBTB16_uc001poq.2_Silent_p.G267G	NM_006006	NP_005997	Q05516	ZBT16_HUMAN	promyelocytic leukemia zinc finger protein	267					apoptosis|central nervous system development|mesonephros development|myeloid cell differentiation|negative regulation of myeloid cell differentiation|negative regulation of transcription, DNA-dependent	nuclear speck|PML body|transcriptional repressor complex	protein homodimerization activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.79e-18)|all_epithelial(67;2.32e-10)|all_hematologic(158;2.96e-05)|Melanoma(852;0.000362)|Acute lymphoblastic leukemia(157;0.00108)|Breast(348;0.0104)|all_neural(223;0.0294)|Prostate(24;0.0318)|Medulloblastoma(222;0.0438)		BRCA - Breast invasive adenocarcinoma(274;6.75e-06)|Epithelial(105;0.000181)|all cancers(92;0.0018)		TCTCAGGAGGGATGGGGGACA	0.632													5	16					0	0	0.00116845	0	0
APOA5	116519	broad.mit.edu	37	11	116660969	116660969	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:116660969G>C	uc001ppr.2	-	3	984	c.976C>G	c.(976-978)CCA>GCA	p.P326A	ZNF259_uc001ppp.2_5'Flank|ZNF259_uc009yzd.2_5'Flank|ZNF259_uc001ppq.2_5'Flank|APOA5_uc009yze.2_Missense_Mutation_p.P326A|APOA5_uc009yzf.2_Missense_Mutation_p.P326A|APOA5_uc009yzg.2_Missense_Mutation_p.P352A	NM_052968	NP_443200	Q6Q788	APOA5_HUMAN	apolipoprotein AV precursor	326					acylglycerol homeostasis|cholesterol homeostasis|lipid transport|lipoprotein metabolic process|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of receptor-mediated endocytosis|positive regulation of triglyceride catabolic process|positive regulation of very-low-density lipoprotein particle remodeling|tissue regeneration|triglyceride catabolic process|triglyceride homeostasis	chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	enzyme binding|heparin binding|lipoprotein lipase activator activity|low-density lipoprotein particle receptor binding|phosphatidylcholine binding				0	all_hematologic(175;0.0487)	all_cancers(61;3.31e-09)|all_epithelial(67;8.03e-06)|Breast(348;0.0126)|Melanoma(852;0.0153)|Acute lymphoblastic leukemia(157;0.0257)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0433)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;4.93e-06)|all cancers(92;0.000123)|OV - Ovarian serous cystadenocarcinoma(223;0.149)		TGAAACTCTGGGGCGAAGGCA	0.597													4	217					0	0	0.000602214	0	0
RNF214	257160	broad.mit.edu	37	11	117150915	117150915	+	Nonsense_Mutation	SNP	T	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:117150915T>G	uc001pqt.2	+	8	1130	c.1085T>G	c.(1084-1086)TTA>TGA	p.L362*	RNF214_uc001pqu.2_Nonsense_Mutation_p.L362*|RNF214_uc010rxf.1_Nonsense_Mutation_p.L207*	NM_207343	NP_997226	Q8ND24	RN214_HUMAN	ring finger protein 214	362	Potential.						zinc ion binding				0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.88e-05)|Epithelial(105;0.000397)|all cancers(92;0.00258)		CGGAAAGAGTTACTGGTACTG	0.363													21	49					0	0	0.000586117	0	0
MLL	4297	broad.mit.edu	37	11	118373601	118373601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:118373601C>T	uc001pta.2	+	27	7008	c.6985C>T	c.(6985-6987)CCT>TCT	p.P2329S	MLL_uc001ptb.2_Missense_Mutation_p.P2332S	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	2329					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		CCCTGGAATTCCTAAACTGGC	0.453			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								22	40					0	0	0.000720815	0	0
HSPA8	3312	broad.mit.edu	37	11	122930895	122930895	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:122930895C>A	uc001pyo.2	-	4	571	c.493G>T	c.(493-495)GCT>TCT	p.A165S	HSPA8_uc009zbc.2_5'UTR|HSPA8_uc001pyp.2_Missense_Mutation_p.A165S|HSPA8_uc010rzu.1_Missense_Mutation_p.A88S|HSPA8_uc009zbd.1_Missense_Mutation_p.A165S|HSPA8_uc010rzv.1_Missense_Mutation_p.A165S	NM_006597	NP_006588	P11142	HSP7C_HUMAN	heat shock 70kDa protein 8 isoform 1	165					cellular membrane organization|interspecies interaction between organisms|mRNA metabolic process|negative regulation of transcription, DNA-dependent|neurotransmitter secretion|post-Golgi vesicle-mediated transport|protein folding|response to unfolded protein|transcription, DNA-dependent	cell surface|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|melanosome|plasma membrane|ribonucleoprotein complex	ATP binding|ATPase activity, coupled|protein binding			central_nervous_system(7)|lung(1)	8		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		TTGAGACCAGCAATAGTTCCA	0.423													6	60					0.00116845	0.00621621	0.00116845	1	0
HSPA8	3312	broad.mit.edu	37	11	122931462	122931462	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:122931462G>C	uc001pyo.2	-	3	328	c.250C>G	c.(250-252)CAG>GAG	p.Q84E	HSPA8_uc009zbc.2_5'Flank|HSPA8_uc001pyp.2_Missense_Mutation_p.Q84E|HSPA8_uc010rzu.1_Intron|HSPA8_uc009zbd.1_Missense_Mutation_p.Q84E|HSPA8_uc010rzv.1_Missense_Mutation_p.Q84E	NM_006597	NP_006588	P11142	HSP7C_HUMAN	heat shock 70kDa protein 8 isoform 1	84					cellular membrane organization|interspecies interaction between organisms|mRNA metabolic process|negative regulation of transcription, DNA-dependent|neurotransmitter secretion|post-Golgi vesicle-mediated transport|protein folding|response to unfolded protein|transcription, DNA-dependent	cell surface|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|melanosome|plasma membrane|ribonucleoprotein complex	ATP binding|ATPase activity, coupled|protein binding			central_nervous_system(7)|lung(1)	8		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		ATATCAGACTGGACAACAGCA	0.418													4	125					0	0	0.000602214	0	0
OR8D2	283160	broad.mit.edu	37	11	124189434	124189434	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:124189434G>A	uc010sah.1	-	1	660	c.660C>T	c.(658-660)TTC>TTT	p.F220F		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		TAGAGAAAATGAAAGCATAAG	0.448													9	8					0	0	0.000274275	0	0
WNK1	65125	broad.mit.edu	37	12	993389	993389	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:993389C>G	uc001qio.3	+	18	4331	c.3824C>G	c.(3823-3825)CCC>CGC	p.P1275R	WNK1_uc001qip.3_Missense_Mutation_p.P1028R|WNK1_uc001qir.3_Missense_Mutation_p.P448R	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	1275					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			AAAGTTTTCCCCAGTGAAATA	0.398													3	76					0	0	0.00116845	0	0
ANO2	57101	broad.mit.edu	37	12	5841763	5841763	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:5841763G>A	uc001qnm.2	-	15	1540	c.1468C>T	c.(1468-1470)CGA>TGA	p.R490*		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	495	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						ATTTTCTCTCGAACTTTGGTT	0.453													20	22					0	0	0.000375601	0	0
LEPREL2	10536	broad.mit.edu	37	12	6948168	6948169	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:6948168_6948169GG>AA	uc001qra.1	+	16	1944_1945	c.1910_1911GG>AA	c.(1909-1911)CGG>CAA	p.R637Q	LEPREL2_uc001qqz.1_Missense_Mutation_p.R444Q|LEPREL2_uc001qrb.1_Missense_Mutation_p.R444Q|GNB3_uc001qrc.2_5'Flank|GNB3_uc001qrd.2_5'Flank|GNB3_uc009zfe.2_5'Flank	NM_014262	NP_055077	Q8IVL6	P3H3_HUMAN	leprecan-like 2 precursor	637	Fe2OG dioxygenase.				negative regulation of cell proliferation	endoplasmic reticulum	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity				0					L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	CTCCAGGCTCGGGTGCGTCCTC	0.658													12	19					0	0	6.4e-05	0	0
C1S	716	broad.mit.edu	37	12	7177593	7177593	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:7177593G>A	uc001qsj.2	+	15	2424	c.1705G>A	c.(1705-1707)GGC>AGC	p.G569S	C1S_uc001qsk.2_Missense_Mutation_p.G569S|C1S_uc001qsl.2_Missense_Mutation_p.G569S|C1S_uc009zfr.2_Missense_Mutation_p.G402S|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	569	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	ACTGATCTCAGGCTGGGGCCG	0.532													7	8					0	0	0.00198382	0	0
CD163	9332	broad.mit.edu	37	12	7637779	7637779	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:7637779C>T	uc001qsz.3	-	11	2820	c.2692G>A	c.(2692-2694)GGA>AGA	p.G898R	CD163_uc001qta.3_Missense_Mutation_p.G898R|CD163_uc009zfw.2_Missense_Mutation_p.G931R	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	898	SRCR 8.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						GTGTCAGGTCCTTTTGGACAC	0.542													11	16					0	0	0.000978159	0	0
ATF7IP	55729	broad.mit.edu	37	12	14578044	14578044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:14578044G>A	uc001rbw.2	+	2	1353	c.1195G>A	c.(1195-1197)GAA>AAA	p.E399K	ATF7IP_uc010shs.1_Missense_Mutation_p.E399K|ATF7IP_uc001rbu.2_Missense_Mutation_p.E399K|ATF7IP_uc001rbv.1_Missense_Mutation_p.E399K|ATF7IP_uc001rbx.2_Missense_Mutation_p.E399K|ATF7IP_uc010sht.1_Missense_Mutation_p.E399K|ATF7IP_uc001rby.3_Missense_Mutation_p.E399K|ATF7IP_uc001rbz.1_Missense_Mutation_p.E399K|ATF7IP_uc001rca.2_Missense_Mutation_p.E399K|ATF7IP_uc001rcb.2_Missense_Mutation_p.E10K	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	399	Glu-rich.				DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						TGAAAAGAATGAAGATGAAAC	0.333													32	36					0	0	0.00178596	0	0
ATF7IP	55729	broad.mit.edu	37	12	14578046	14578046	+	Silent	SNP	A	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:14578046A>G	uc001rbw.2	+	2	1355	c.1197A>G	c.(1195-1197)GAA>GAG	p.E399E	ATF7IP_uc010shs.1_Silent_p.E399E|ATF7IP_uc001rbu.2_Silent_p.E399E|ATF7IP_uc001rbv.1_Silent_p.E399E|ATF7IP_uc001rbx.2_Silent_p.E399E|ATF7IP_uc010sht.1_Silent_p.E399E|ATF7IP_uc001rby.3_Silent_p.E399E|ATF7IP_uc001rbz.1_Silent_p.E399E|ATF7IP_uc001rca.2_Silent_p.E399E|ATF7IP_uc001rcb.2_Silent_p.E10E	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	399	Glu-rich.				DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						AAAAGAATGAAGATGAAACTT	0.333													29	35					0	0	0.00106085	0	0
H2AFJ	55766	broad.mit.edu	37	12	14927698	14927698	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:14927698G>A	uc009zia.2	+	1	429	c.294G>A	c.(292-294)CTG>CTA	p.L98L	H2AFJ_uc001rch.3_RNA	NM_177925	NP_808760	Q9BTM1	H2AJ_HUMAN	H2A histone family, member J	98					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)	1						ACAAGCTGCTGGGCAAAGTGA	0.597													20	30					0	0	0.000586117	0	0
PLCZ1	89869	broad.mit.edu	37	12	18854486	18854486	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:18854486C>T	uc010sid.1	-	9	1157	c.966G>A	c.(964-966)AAG>AAA	p.K322K	PLCZ1_uc001rdv.3_Silent_p.K218K|PLCZ1_uc001rdw.3_Silent_p.K63K|PLCZ1_uc001rdu.1_Silent_p.K104K|PLCZ1_uc009zil.1_RNA	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	322					intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					CCCCTGTTTCCTTGTCTTGAT	0.259													14	20					0	0	0.000219431	0	0
CAPRIN2	65981	broad.mit.edu	37	12	30862917	30862917	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:30862917C>G	uc001rji.1	-	18	4054	c.3303G>C	c.(3301-3303)TGG>TGC	p.W1101C	CAPRIN2_uc001rjf.1_3'UTR|CAPRIN2_uc001rjg.1_Missense_Mutation_p.W768C|CAPRIN2_uc001rjh.1_Missense_Mutation_p.W1051C|CAPRIN2_uc001rjj.1_Missense_Mutation_p.W767C|CAPRIN2_uc001rjk.3_3'UTR|CAPRIN2_uc001rjl.3_3'UTR	NM_001002259	NP_001002259	Q6IMN6	CAPR2_HUMAN	C1q domain containing 1 isoform 1	1101	C1q.				negative regulation of cell growth|negative regulation of translation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of transcription from RNA polymerase II promoter	mitochondrion|receptor complex	receptor binding|RNA binding			ovary(1)|central_nervous_system(1)	2	all_lung(12;1.13e-09)|Lung NSC(12;7.98e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					GCAGACGTAACCATATCTGGT	0.428													15	25					0	0	0.000219431	0	0
SYT10	341359	broad.mit.edu	37	12	33538203	33538203	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:33538203G>A	uc001rll.1	-	4	1398	c.1101C>T	c.(1099-1101)ATC>ATT	p.I367I	SYT10_uc009zju.1_Silent_p.I177I	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	367	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					GGGAAAACATGATTTCACCCA	0.398													5	7					0	0	0.00198382	0	0
KIF21A	55605	broad.mit.edu	37	12	39752106	39752107	+	Missense_Mutation	DNP	TT	AA	AA			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:39752106_39752107TT>AA	uc001rly.2	-	8	1234_1235	c.1088_1089AA>TT	c.(1087-1089)AAA>ATT	p.K363I	KIF21A_uc001rlx.2_Missense_Mutation_p.K363I|KIF21A_uc001rlz.2_Missense_Mutation_p.K363I|KIF21A_uc010skl.1_Missense_Mutation_p.K363I|KIF21A_uc001rma.1_Missense_Mutation_p.K371I	NM_017641	NP_060111	Q7Z4S6	KI21A_HUMAN	kinesin family member 21A	363					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(4)|pancreas(1)|lung(1)|skin(1)	7		Lung NSC(34;0.179)|all_lung(34;0.213)				GATTGGCGTATTTCAGGGTGTT	0.401													40	82					0	0	6.4e-05	0	0
ARID2	196528	broad.mit.edu	37	12	46205282	46205282	+	Silent	SNP	T	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:46205282T>G	uc001ros.1	+	4	366	c.366T>G	c.(364-366)CTT>CTG	p.L122L	ARID2_uc001ror.2_Silent_p.L122L	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	122					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		AGCCACAGCTTCCTATTGGTG	0.408													6	17					0	0	0.00198382	0	0
MLL2	8085	broad.mit.edu	37	12	49443655	49443655	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:49443655G>A	uc001rta.3	-	11	3716	c.3716C>T	c.(3715-3717)TCC>TTC	p.S1239F		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	1239					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CAACTCCATGGACAGGGAGCC	0.587			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			22	23					0	0	0.000375601	0	0
RACGAP1	29127	broad.mit.edu	37	12	50410446	50410446	+	Missense_Mutation	SNP	C	G	G	rs149682099		TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:50410446C>G	uc001rvt.2	-	4	363	c.53G>C	c.(52-54)CGG>CCG	p.R18P	RACGAP1_uc009zlm.1_Missense_Mutation_p.R18P|RACGAP1_uc001rvs.2_Missense_Mutation_p.R18P|RACGAP1_uc001rvu.2_Missense_Mutation_p.R18P	NM_013277	NP_037409	Q9H0H5	RGAP1_HUMAN	Rac GTPase activating protein 1	18					blood coagulation|cytokinesis, actomyosin contractile ring assembly|cytokinesis, initiation of separation|embryo development|microtubule-based movement|neuroblast proliferation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|spermatogenesis|sulfate transport	acrosomal vesicle|cytosol|microtubule|midbody|nucleus|spindle	alpha-tubulin binding|beta-tubulin binding|gamma-tubulin binding|GTPase activator activity|metal ion binding			kidney(1)	1						AATCTCCACCCGGCGCACAAG	0.443													4	144					0	0	0.00116845	0	0
KRT84	3890	broad.mit.edu	37	12	52777531	52777531	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:52777531G>A	uc001sah.1	-	2	646	c.598C>T	c.(598-600)CTC>TTC	p.L200F		NM_033045	NP_149034	Q9NSB2	KRT84_HUMAN	keratin, hair, basic, 4	200	Rod.|Coil 1A.					keratin filament	structural constituent of epidermis			skin(1)	1	all_hematologic(5;0.12)			BRCA - Breast invasive adenocarcinoma(357;0.189)		TGCTCTTGGAGGAAGCTCCAC	0.512													21	15					0	0	0.00229938	0	0
KRT6B	3854	broad.mit.edu	37	12	52845466	52845466	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:52845466C>T	uc001sak.2	-	1	445	c.397G>A	c.(397-399)GGA>AGA	p.G133R		NM_005555	NP_005546	P04259	K2C6B_HUMAN	keratin 6B	133	Head.				ectoderm development	keratin filament	structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.083)		TGGATGCCTCCAGGGGGGCAC	0.637													8	31					0	0	0.000442599	0	0
NPFF	8620	broad.mit.edu	37	12	53900650	53900651	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:53900650_53900651CC>TT	uc001sdw.1	-	3	415_416	c.251_252GG>AA	c.(250-252)TGG>TAA	p.W84*		NM_003717	NP_003708	O15130	NPFF_HUMAN	neuropeptide FF-amide peptide preproprotein	84					neuropeptide signaling pathway|synaptic transmission	extracellular region|soluble fraction	neuropeptide hormone activity				0						ATTCATTCCTCCAGGATCCCTG	0.564													28	50					0	0	6.4e-05	0	0
HOXC4	3221	broad.mit.edu	37	12	54448812	54448812	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:54448812C>T	uc001seu.2	+	4	1298	c.618C>T	c.(616-618)AAC>AAT	p.N206N	HOXC4_uc001sex.2_Silent_p.N206N	NM_014620	NP_055435	P09017	HXC4_HUMAN	homeobox C4	206	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGTTCCAAAACCGTCGCATGA	0.577													9	9					0	0	0.000274275	0	0
OR6C76	390326	broad.mit.edu	37	12	55820846	55820846	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:55820846G>A	uc010spm.1	+	1	809	c.809G>A	c.(808-810)GGA>GAA	p.G270E		NM_001005183	NP_001005183	A6NM76	O6C76_HUMAN	olfactory receptor, family 6, subfamily C,	270	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTGACAAAAGGAGTAGCTATA	0.403													6	13					0	0	0.00116845	0	0
OR6C2	341416	broad.mit.edu	37	12	55846191	55846191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:55846191C>T	uc001sgz.1	+	1	194	c.194C>T	c.(193-195)TCC>TTC	p.S65F		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	65	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						AGAAATTTTTCCTTCTTAGAA	0.398													10	16					0	0	0.000442599	0	0
IRAK3	11213	broad.mit.edu	37	12	66641485	66641485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:66641485C>T	uc001sth.2	+	12	1427	c.1325C>T	c.(1324-1326)ACT>ATT	p.T442I	IRAK3_uc010ssy.1_Missense_Mutation_p.T381I	NM_007199	NP_009130	Q9Y616	IRAK3_HUMAN	interleukin-1 receptor-associated kinase 3	442	Protein kinase.				interleukin-1-mediated signaling pathway|MyD88-dependent toll-like receptor signaling pathway|negative regulation of innate immune response|negative regulation of interleukin-12 production|negative regulation of interleukin-6 production|negative regulation of macrophage cytokine production|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein catabolic process|negative regulation of protein complex disassembly|negative regulation of toll-like receptor signaling pathway|negative regulation of tumor necrosis factor production|positive regulation of macrophage tolerance induction|positive regulation of NF-kappaB transcription factor activity|response to exogenous dsRNA|response to lipopolysaccharide|response to peptidoglycan	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein heterodimerization activity|protein homodimerization activity|protein serine/threonine kinase activity			lung(3)|ovary(2)|breast(2)|central_nervous_system(1)	8				GBM - Glioblastoma multiforme(28;0.0203)		GTTTTAAATACTCTTGAAAGT	0.338													12	30					0	0	0.00185496	0	0
TSPAN8	7103	broad.mit.edu	37	12	71533616	71533616	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:71533616C>T	uc009zrt.1	-	3	298	c.136G>A	c.(136-138)GAA>AAA	p.E46K	TSPAN8_uc001swk.1_Missense_Mutation_p.E46K|TSPAN8_uc001swj.1_Missense_Mutation_p.E46K	NM_004616	NP_004607	P19075	TSN8_HUMAN	transmembrane 4 superfamily member 3	46	Extracellular (Potential).				protein glycosylation	integral to membrane|lysosome	signal transducer activity			skin(2)|lung(1)|central_nervous_system(1)	4			LUSC - Lung squamous cell carcinoma(43;0.24)|OV - Ovarian serous cystadenocarcinoma(12;0.244)			CCTACATCTTCAGAACCAAAA	0.323													41	42					0	0	0.00195071	0	0
E2F7	144455	broad.mit.edu	37	12	77421669	77421669	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:77421669G>A	uc001sym.3	-	11	2370	c.2134C>T	c.(2134-2136)CCT>TCT	p.P712S	E2F7_uc009zse.2_Missense_Mutation_p.P199S	NM_203394	NP_976328	Q96AV8	E2F7_HUMAN	E2F transcription factor 7	712					cell cycle	transcription factor complex	DNA binding|identical protein binding			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3						TTACCTGCAGGAGACTGCACA	0.413													9	29					0	0	0.000978159	0	0
Unknown	0	broad.mit.edu	37	12	95228369	95228369	+	RNA	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:95228369C>T	uc001tdk.2	+	1		c.196C>T								Homo sapiens mRNA for keratin 19, partial cds, isolate:K19-141.																		AGGCACAGATCAAAGGCCTGA	0.542													10	9					0	0	0.000442599	0	0
ANKS1B	56899	broad.mit.edu	37	12	99223131	99223131	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:99223131C>T	uc001tge.1	-	19	3304	c.2887G>A	c.(2887-2889)GAA>AAA	p.E963K	ANKS1B_uc001tgf.1_Intron|ANKS1B_uc001tgk.2_Missense_Mutation_p.E260K|ANKS1B_uc010svd.1_5'UTR|ANKS1B_uc001tgd.1_Intron|ANKS1B_uc009ztq.2_5'UTR|ANKS1B_uc010sve.1_5'UTR|ANKS1B_uc001tgh.3_5'UTR|ANKS1B_uc001tgi.2_Missense_Mutation_p.E189K|ANKS1B_uc009ztr.2_Intron|ANKS1B_uc001tgj.2_Intron|ANKS1B_uc009ztp.2_5'UTR|ANKS1B_uc010svf.1_5'UTR|ANKS1B_uc001tgg.3_Intron|ANKS1B_uc010svg.1_Intron|ANKS1B_uc009zts.1_Missense_Mutation_p.E189K	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	963						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		CCACTGGGTTCCTGAATGGAA	0.443													11	13					0	0	0.00136819	0	0
SLC17A8	246213	broad.mit.edu	37	12	100813746	100813746	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:100813746G>A	uc010svi.1	+	12	1892	c.1579G>A	c.(1579-1581)GAA>AAA	p.E527K	SLC17A8_uc009ztx.2_Missense_Mutation_p.E477K	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	527	Cytoplasmic (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						TGACCAGGACGAATTAGCTGA	0.468													7	9					0	0	0.00198382	0	0
UTP20	27340	broad.mit.edu	37	12	101679413	101679413	+	Silent	SNP	C	T	T	rs143038674		TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:101679413C>T	uc001tia.1	+	3	348	c.192C>T	c.(190-192)TTC>TTT	p.F64F	UTP20_uc009ztz.1_Silent_p.F64F	NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	64					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						CAGAACACTTCGGTATTTTCT	0.333													26	28					0	0	0.000720815	0	0
STAB2	55576	broad.mit.edu	37	12	104126784	104126784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:104126784G>A	uc001tjw.2	+	51	5470	c.5284G>A	c.(5284-5286)GAC>AAC	p.D1762N	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1762	Extracellular (Potential).|FAS1 6.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TGTGTTTCAGGACTCAGGTTT	0.577													10	15					0	0	0.00136819	0	0
BTBD11	121551	broad.mit.edu	37	12	108013802	108013802	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:108013802G>A	uc001tmk.1	+	11	3013	c.2492G>A	c.(2491-2493)CGG>CAG	p.R831Q	BTBD11_uc009zut.1_Missense_Mutation_p.R712Q|BTBD11_uc001tmj.2_Missense_Mutation_p.R831Q|BTBD11_uc001tml.1_Missense_Mutation_p.R368Q	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	831	ANK 5.					integral to membrane	DNA binding			skin(2)|ovary(1)	3						GAGTCTTTGCGGATCGCCTTC	0.428													7	9					0	0	0.000274275	0	0
TRPV4	59341	broad.mit.edu	37	12	110236480	110236480	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:110236480G>A	uc001tpj.1	-	5	1186	c.1091C>T	c.(1090-1092)GCC>GTC	p.A364V	TRPV4_uc001tpg.1_Missense_Mutation_p.A330V|TRPV4_uc001tph.1_Missense_Mutation_p.A317V|TRPV4_uc001tpi.1_Missense_Mutation_p.A317V|TRPV4_uc001tpk.1_Missense_Mutation_p.A364V|TRPV4_uc001tpl.1_Missense_Mutation_p.A364V	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	364	Cytoplasmic (Potential).				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						GTTGAGCACGGCCTCCAGGTT	0.592													18	16					0	0	0.000375601	0	0
CCDC63	160762	broad.mit.edu	37	12	111336817	111336817	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:111336817G>A	uc001trv.1	+	10	1425	c.1230G>A	c.(1228-1230)TTG>TTA	p.L410L	CCDC63_uc010sye.1_Silent_p.L370L|CCDC63_uc001trw.1_Silent_p.L325L	NM_152591	NP_689804	Q8NA47	CCD63_HUMAN	coiled-coil domain containing 63	410	Potential.									skin(6)|ovary(1)|pancreas(1)	8						TGGATCTATTGAAGAACTCAG	0.498													11	18					0	0	0.000673444	0	0
CCDC64	92558	broad.mit.edu	37	12	120499591	120499591	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:120499591C>T	uc001txl.1	+	3	748	c.723C>T	c.(721-723)ACC>ACT	p.T241T	CCDC64_uc001txk.2_Silent_p.T241T|CCDC64_uc009zwv.1_RNA|CCDC64_uc010sze.1_5'Flank	NM_207311	NP_997194	Q6ZP65	BICR1_HUMAN	coiled-coil domain containing 64	241	Potential.				Golgi to secretory granule transport|neuron projection development	centrosome	dynactin binding|Rab GTPase binding			ovary(2)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					ACTCATCAACCAACCAGCACA	0.532													7	16					0	0	0.00198382	0	0
RNF10	9921	broad.mit.edu	37	12	121004729	121004729	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:121004729G>A	uc001typ.3	+	13	2470	c.1987G>A	c.(1987-1989)GGC>AGC	p.G663S	RNF10_uc010szk.1_RNA|RNF10_uc001tyq.3_Missense_Mutation_p.G574S	NM_014868	NP_055683	Q8N5U6	RNF10_HUMAN	ring finger protein 10	663					negative regulation of Schwann cell proliferation|positive regulation of myelination|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription regulatory region DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CAGCACCGAGGGCCATGGGGC	0.498													26	28					0	0	0.000720815	0	0
ACADS	35	broad.mit.edu	37	12	121175679	121175680	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:121175679_121175680GG>AA	uc001tza.3	+	5	630_631	c.512_513GG>AA	c.(511-513)CGG>CAA	p.R171Q	ACADS_uc010szl.1_Intron|ACADS_uc001tzb.3_Missense_Mutation_p.R98Q	NM_000017	NP_000008	P16219	ACADS_HUMAN	short-chain acyl-CoA dehydrogenase precursor	171						mitochondrial matrix	butyryl-CoA dehydrogenase activity			central_nervous_system(2)	2	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)	Lung NSC(355;0.163)			NADH(DB00157)	ACCACCGCCCGGGCCGAGGGCG	0.658													50	90					0	0	6.4e-05	0	0
SCARB1	949	broad.mit.edu	37	12	125298849	125298850	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:125298849_125298850CC>TT	uc001ugo.3	-	4	781_782	c.528_529GG>AA	c.(526-531)GTGGGT>GTAAGT	p.G177S	SCARB1_uc001ugn.3_Missense_Mutation_p.G177S|SCARB1_uc001ugm.3_Missense_Mutation_p.G177S|SCARB1_uc010tbd.1_Missense_Mutation_p.G177S|SCARB1_uc010tbe.1_Missense_Mutation_p.G136S|SCARB1_uc001ugp.3_Missense_Mutation_p.G177S	NM_005505	NP_005496	Q8WTV0	SCRB1_HUMAN	scavenger receptor class B, member 1 isoform 1	177	Extracellular (Potential).				adhesion to symbiont|cell adhesion|cholesterol efflux|cholesterol homeostasis|cholesterol import|detection of lipopolysaccharide|high-density lipoprotein particle clearance|high-density lipoprotein particle remodeling|lipopolysaccharide transport|lipoprotein metabolic process|positive regulation of cholesterol storage|positive regulation of endothelial cell migration|positive regulation of nitric-oxide synthase activity|recognition of apoptotic cell|reverse cholesterol transport|triglyceride homeostasis|wound healing	caveola	1-phosphatidylinositol binding|apolipoprotein A-I binding|high-density lipoprotein particle receptor activity|lipopolysaccharide receptor activity|low-density lipoprotein particle binding|phosphatidylserine binding|transporter activity			kidney(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000116)|Epithelial(86;0.000415)|all cancers(50;0.00395)	Phosphatidylserine(DB00144)	ATGATCTCACCCACAGTGCGGT	0.52													20	30					0	0	6.4e-05	0	0
GALNT9	50614	broad.mit.edu	37	12	132681656	132681656	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr12:132681656T>G	uc001ukc.3	-	11	1924	c.1808A>C	c.(1807-1809)CAC>CCC	p.H603P	GALNT9_uc009zyr.2_Missense_Mutation_p.H377P|GALNT9_uc001ukb.2_Missense_Mutation_p.H460P|GALNT9_uc001uka.2_Missense_Mutation_p.H237P	NM_001122636	NP_001116108	Q9HCQ5	GALT9_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	603	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.241)		OV - Ovarian serous cystadenocarcinoma(86;7.49e-08)|Epithelial(86;3.55e-07)|all cancers(50;2.09e-05)		GTGGGGTCAGTGCCGTGCGTG	0.637													10	34					0	0	0.00136819	0	0
NBEA	26960	broad.mit.edu	37	13	35738574	35738574	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr13:35738574C>T	uc001uvb.2	+	25	4367	c.4161C>T	c.(4159-4161)TCC>TCT	p.S1387S	NBEA_uc010abi.2_Silent_p.S78S	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1387						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		ACCTCATTTCCCAAATGGTAG	0.353													6	6					0	0	0.00198382	0	0
SOHLH2	54937	broad.mit.edu	37	13	36748872	36748872	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr13:36748872G>A	uc001uvj.2	-	7	865	c.776C>T	c.(775-777)GCC>GTC	p.A259V	SOHLH2_uc010tei.1_Missense_Mutation_p.A336V	NM_017826	NP_060296	Q9NX45	SOLH2_HUMAN	spermatogenesis and oogenesis specific basic	259					cell differentiation|multicellular organismal development|oogenesis|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;4.63e-08)|Epithelial(112;2.67e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00272)|BRCA - Breast invasive adenocarcinoma(63;0.00685)|GBM - Glioblastoma multiforme(144;0.0273)		GGCCATAACGGCTGGAGAGAT	0.363													36	33					0	0	0.00170553	0	0
LMO7	4008	broad.mit.edu	37	13	76427445	76427446	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr13:76427445_76427446GG>AA	uc001vjv.2	+	25	4643_4644	c.3883_3884GG>AA	c.(3883-3885)GGT>AAT	p.G1295N	LMO7_uc010thv.1_Missense_Mutation_p.G1246N|LMO7_uc010thw.1_Missense_Mutation_p.G1172N	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	1580						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		CTCCACCACAGGTGTGGCCACC	0.609													4	13					0	0	6.4e-05	0	0
FAM155A	728215	broad.mit.edu	37	13	107822874	107822874	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr13:107822874G>A	uc001vql.2	-	3	1864	c.1348C>T	c.(1348-1350)CTG>TTG	p.L450L		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	450						integral to membrane	binding			skin(1)	1						TTTTCTTCCAGCGTGTTGATG	0.517													24	30					0	0	0.00127121	0	0
ARHGEF7	8874	broad.mit.edu	37	13	111926203	111926203	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr13:111926203C>T	uc001vrs.2	+	11	1429	c.1179C>T	c.(1177-1179)AGC>AGT	p.S393S	ARHGEF7_uc001vrr.2_Silent_p.S372S|ARHGEF7_uc001vrt.2_Silent_p.S343S|ARHGEF7_uc010tjn.1_Intron|ARHGEF7_uc001vru.1_Silent_p.S215S|ARHGEF7_uc001vrv.3_Silent_p.S215S|ARHGEF7_uc001vrw.3_Silent_p.S215S|ARHGEF7_uc001vrx.3_Silent_p.S215S|ARHGEF7_uc010tjo.1_Silent_p.S290S|ARHGEF7_uc010tjp.1_Silent_p.S137S|ARHGEF7_uc010agn.1_Silent_p.S137S	NM_001113511	NP_001106983	Q14155	ARHG7_HUMAN	PAK-interacting exchange factor beta isoform c	393	DH.				apoptosis|epidermal growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_lung(23;3.96e-05)|Lung NSC(43;0.00156)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.188)			GTGCCAGCAGCCCTGGGATTC	0.557													13	48					0	0	0.000422831	0	0
Unknown	0	broad.mit.edu	37	14	22192426	22192426	+	RNA	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr14:22192426G>A	uc001wbn.2	+	2		c.329G>A								Homo sapiens mRNA for T cell receptor alpha variable 3, partial cds, clone: SEB 36.																		AGTTCCTTCTGAAATACATCA	0.453													23	30					0	0	0.00127121	0	0
ABHD4	63874	broad.mit.edu	37	14	23072902	23072902	+	Silent	SNP	A	C	C			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr14:23072902A>C	uc001wgm.2	+	4	627	c.558A>C	c.(556-558)GCA>GCC	p.A186A	ABHD4_uc010tmz.1_3'UTR|ABHD4_uc010tna.1_Silent_p.A186A|ABHD4_uc010tnb.1_Intron	NM_022060	NP_071343	Q8TB40	ABHD4_HUMAN	abhydrolase domain containing 4	186					lipid catabolic process		hydrolase activity			central_nervous_system(1)	1	all_cancers(95;5.49e-05)			GBM - Glioblastoma multiforme(265;0.0153)		AGATCCGTGCACCCCCAGCCT	0.552													15	28					0	0	0.000958276	0	0
ABHD4	63874	broad.mit.edu	37	14	23072910	23072911	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr14:23072910_23072911CC>AT	uc001wgm.2	+	4	635_636	c.566_567CC>AT	c.(565-567)GCC>GAT	p.A189D	ABHD4_uc010tmz.1_3'UTR|ABHD4_uc010tna.1_Missense_Mutation_p.A189D|ABHD4_uc010tnb.1_Intron	NM_022060	NP_071343	Q8TB40	ABHD4_HUMAN	abhydrolase domain containing 4	189					lipid catabolic process		hydrolase activity			central_nervous_system(1)	1	all_cancers(95;5.49e-05)			GBM - Glioblastoma multiforme(265;0.0153)		GCACCCCCAGCCTGGGTCAAAG	0.545													16	33					0	0	6.4e-05	0	0
NOVA1	4857	broad.mit.edu	37	14	26917279	26917279	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr14:26917279C>T	uc001wpy.2	-	5	1728	c.1410G>A	c.(1408-1410)CGG>CGA	p.R470R	NOVA1_uc001wpz.2_Silent_p.R446R|NOVA1_uc001wqa.2_Silent_p.R348R	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	473	KH 3.				locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		TGGTTACCTTCCGATTCCTTG	0.453													9	18					0	0	0.000274275	0	0
PSMC6	5706	broad.mit.edu	37	14	53173913	53173913	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr14:53173913C>T	uc010tqx.1	+	1	18	c.18C>T	c.(16-18)ATC>ATT	p.I6I	PSMC6_uc010tqv.1_Silent_p.I6I|PSMC6_uc010tqw.1_5'UTR	NM_002806	NP_002797	P62333	PRS10_HUMAN	proteasome 26S ATPase subunit 6	Error:Variant_position_missing_in_P62333_after_alignment					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding, bridging			lung(1)	1	Breast(41;0.176)					TTCCCGGCATCCCCTATGAGA	0.647													9	12					0	0	0.000442599	0	0
DACT1	51339	broad.mit.edu	37	14	59113370	59113370	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr14:59113370C>T	uc001xdw.2	+	4	2193	c.2029C>T	c.(2029-2031)CGG>TGG	p.R677W	DACT1_uc010trv.1_Missense_Mutation_p.R396W|DACT1_uc001xdx.2_Missense_Mutation_p.R640W|DACT1_uc010trw.1_Missense_Mutation_p.R396W	NM_016651	NP_057735	Q9NYF0	DACT1_HUMAN	dapper 1 isoform 1	677					multicellular organismal development|Wnt receptor signaling pathway	cytoplasm|nucleus				large_intestine(2)|lung(2)|ovary(1)	5						AACTGACTACCGGCGGTGGAA	0.721													7	11					0	0	0.000274275	0	0
RTN1	6252	broad.mit.edu	37	14	60194363	60194363	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr14:60194363C>T	uc001xen.1	-	3	1248	c.1039G>A	c.(1039-1041)GGG>AGG	p.G347R	RTN1_uc001xem.1_5'UTR	NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	347					neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		CTGCCTTTCCCCTGGGATTCT	0.572													10	12					0	0	0.00185496	0	0
PPM1A	5494	broad.mit.edu	37	14	60756565	60756565	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr14:60756565C>T	uc010apn.2	+	5	1396	c.994C>T	c.(994-996)CAT>TAT	p.H332Y	PPM1A_uc001xew.3_Missense_Mutation_p.H405Y|PPM1A_uc001xey.3_Missense_Mutation_p.H332Y	NM_021003	NP_066283	P35813	PPM1A_HUMAN	protein phosphatase 1A isoform 1	332					cell cycle arrest|insulin receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway|protein dephosphorylation|Wnt receptor signaling pathway	cytosol|nucleus|protein serine/threonine phosphatase complex	magnesium ion binding|manganese ion binding|protein serine/threonine phosphatase activity|signal transducer activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.046)		CGACTTAGTCCATGTGATGCG	0.428													11	17					0	0	0.000308642	0	0
GPHB5	122876	broad.mit.edu	37	14	63784530	63784530	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr14:63784530C>T	uc010apu.2	-	1	34	c.34G>A	c.(34-36)GCC>ACC	p.A12T	GPHB5_uc001xgc.2_Missense_Mutation_p.A2T	NM_145171	NP_660154	Q86YW7	GPHB5_HUMAN	glycoprotein beta 5	12						extracellular region	hormone activity			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00372)|all cancers(60;0.0226)|BRCA - Breast invasive adenocarcinoma(234;0.0978)		AGGAGGAGGGCCATGGGGCCA	0.582													7	12					0	0	0.000673444	0	0
PNMA1	9240	broad.mit.edu	37	14	74180022	74180022	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr14:74180022G>A	uc001xor.1	-	1	1107	c.321C>T	c.(319-321)CTC>CTT	p.L107L		NM_006029	NP_006020	Q8ND90	PNMA1_HUMAN	paraneoplastic antigen MA1	107					apoptosis|central nervous system development|inflammatory response to antigenic stimulus|spermatogenesis	cytoplasm|focal adhesion|nucleolus	protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00331)|KIRC - Kidney renal clear cell carcinoma(182;0.0797)		tagctaggaagaggtgcaatc	0													28	42					0	0	0.000720815	0	0
NEK9	91754	broad.mit.edu	37	14	75587855	75587855	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr14:75587855G>A	uc001xrl.2	-	3	574	c.420C>T	c.(418-420)ATC>ATT	p.I140I		NM_033116	NP_149107	Q8TD19	NEK9_HUMAN	NIMA-related kinase 9	140	Protein kinase.				cell division|mitosis	mitochondrion|nucleus	ATP binding|metal ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(2)|stomach(2)|ovary(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00718)		TCTGACGAAGGATTTTGTCAT	0.368													19	29					0	0	0.000375601	0	0
KIAA1409	57578	broad.mit.edu	37	14	94046521	94046521	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr14:94046521G>A	uc001ybv.1	+	16	2012	c.1929G>A	c.(1927-1929)ACG>ACA	p.T643T	KIAA1409_uc001ybs.1_Silent_p.T643T	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	820						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		ATGGAATCACGATGGGTTTAG	0.418													19	30					0	0	0.000720815	0	0
KIAA1409	57578	broad.mit.edu	37	14	94053205	94053205	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr14:94053205G>A	uc001ybv.1	+	19	2535	c.2452G>A	c.(2452-2454)GAT>AAT	p.D818N	KIAA1409_uc001ybs.1_Missense_Mutation_p.D818N	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	995						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		TGCCAGAAAAGATCACCCTCA	0.368													55	70					0	0	0.000781405	0	0
AK7	122481	broad.mit.edu	37	14	96924440	96924440	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr14:96924440C>G	uc001yfn.2	+	12	1292	c.1248C>G	c.(1246-1248)AAC>AAG	p.N416K		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	416	Adenylate kinase.|Potential.				cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		TTGCCCCTAACGATGTagggg	0.393													11	18					0	0	0.000673444	0	0
TDRD9	122402	broad.mit.edu	37	14	104493225	104493226	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr14:104493225_104493226CC>TT	uc001yom.3	+	28	3261_3262	c.3231_3232CC>TT	c.(3229-3234)GTCCTC>GTTTTC	p.L1078F	TDRD9_uc001yon.3_Missense_Mutation_p.L816F	NM_153046	NP_694591	Q8NDG6	TDRD9_HUMAN	tudor domain containing 9	1078					cell differentiation|DNA methylation involved in gamete generation|fertilization|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	nucleus|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0768)				TAAGAGACGTCCTCATCCAGCA	0.574													14	16					0	0	6.4e-05	0	0
ADAM6	8755	broad.mit.edu	37	14	106552558	106552558	+	RNA	SNP	C	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr14:106552558C>A	uc010tyt.1	-	1447		c.30277G>T								Parts of antibodies, mostly variable regions.												0						CCAAGCCTCCCCCAGACTCCA	0.552													11	15					9.05144e-12	4.93496e-11	0.00185496	1	0
ADAM6	8755	broad.mit.edu	37	14	106805454	106805454	+	RNA	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr14:106805454G>A	uc010tyt.1	-	360		c.13754C>T			uc001ysw.1_5'Flank					Parts of antibodies, mostly variable regions.												0						GTGAGGGACAGGGTCTGTGAA	0.617													10	30					0	0	0.000978159	0	0
ADAM6	8755	broad.mit.edu	37	14	107034769	107034769	+	RNA	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr14:107034769C>T	uc010tyt.1	-	154		c.7464G>A			uc001ysz.2_Missense_Mutation_p.S104N					Parts of antibodies, mostly variable regions.												0						GGCCTTCAGGCTGCTCCACTG	0.582													57	35					0	0	0.000781405	0	0
OR4M2	390538	broad.mit.edu	37	15	22368705	22368705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr15:22368705C>T	uc010tzu.1	+	1	130	c.130C>T	c.(130-132)CTT>TTT	p.L44F	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	44	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		AGGAAATATCCTTATCATTTG	0.408													19	82					0	0	0.00121646	0	0
OR4M2	390538	broad.mit.edu	37	15	22369378	22369378	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr15:22369378C>T	uc010tzu.1	+	1	803	c.803C>T	c.(802-804)TCC>TTC	p.S268F	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		GACTCGTTTTCCCTAGATAAA	0.423													6	33					0	0	0.00198382	0	0
C15orf2	23742	broad.mit.edu	37	15	24923572	24923572	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr15:24923572G>A	uc001ywo.2	+	1	3032	c.2558G>A	c.(2557-2559)GGG>GAG	p.G853E		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	853					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TTTTATATGGGGCTTCCTGGT	0.493													25	30					0	0	0.000720815	0	0
MGA	23269	broad.mit.edu	37	15	42042693	42042693	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr15:42042693C>T	uc010ucy.1	+	17	7069	c.6888C>T	c.(6886-6888)TTC>TTT	p.F2296F	MGA_uc010ucz.1_Silent_p.F2087F|MGA_uc010uda.1_Silent_p.F912F|MGA_uc001zoi.2_Silent_p.F510F	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	2257	Basic motif.					MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		GTGCTGACTTCACTGTTTTGG	0.423													11	11					0	0	0.000978159	0	0
ZSCAN29	146050	broad.mit.edu	37	15	43653764	43653764	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr15:43653764C>T	uc001zrk.1	-	5	2213	c.2066G>A	c.(2065-2067)CGG>CAG	p.R689Q	ZSCAN29_uc001zrj.1_Missense_Mutation_p.R569Q|ZSCAN29_uc010bdf.1_3'UTR|ZSCAN29_uc001zrl.1_RNA|ZSCAN29_uc010bdg.1_Missense_Mutation_p.R299Q	NM_152455	NP_689668	Q8IWY8	ZSC29_HUMAN	zinc finger protein 690	689	C2H2-type 1.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.97e-07)		TCGTGCACTCCGACTGAAGCT	0.433													18	21					0	0	0.000566183	0	0
ZSCAN29	146050	broad.mit.edu	37	15	43654012	43654013	+	Missense_Mutation	DNP	GC	AT	AT			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr15:43654012_43654013GC>AT	uc001zrk.1	-	5	1964_1965	c.1817_1818GC>AT	c.(1816-1818)GGC>GAT	p.G606D	ZSCAN29_uc001zrj.1_Missense_Mutation_p.G486D|ZSCAN29_uc010bdf.1_Missense_Mutation_p.A535I|ZSCAN29_uc001zrl.1_RNA|ZSCAN29_uc010bdg.1_Missense_Mutation_p.G216D	NM_152455	NP_689668	Q8IWY8	ZSC29_HUMAN	zinc finger protein 690	606					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.97e-07)		CACTCTCATTGCCTTTACCCTG	0.436													34	60					0	0	6.4e-05	0	0
CATSPER2P1	440278	broad.mit.edu	37	15	44028891	44028891	+	RNA	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr15:44028891G>A	uc001zss.2	-	4		c.890C>T				NR_002318				Homo sapiens cation channel, sperm associated 2 pseudogene 1, mRNA (cDNA clone IMAGE:5294645).												0						AATGATTGATGTTTAGTTTTA	0.254													4	5					0	0	0.00024832	0	0
C15orf43	145645	broad.mit.edu	37	15	45258435	45258435	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr15:45258435C>T	uc001zuk.2	+	5	445	c.428C>T	c.(427-429)TCC>TTC	p.S143F		NM_152448	NP_689661	Q8NHR7	CO043_HUMAN	hypothetical protein LOC145645	143											0		all_cancers(109;3.68e-08)|all_epithelial(112;1.05e-06)|Lung NSC(122;1.42e-05)|all_lung(180;0.000112)|Melanoma(134;0.0192)		all cancers(107;7.64e-17)|GBM - Glioblastoma multiforme(94;2.03e-06)		AAAGAATTATCCAAAAGGTAT	0.234													6	8					0	0	0.00116845	0	0
ONECUT1	3175	broad.mit.edu	37	15	53081678	53081678	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr15:53081678G>A	uc002aci.1	-	1	532	c.404C>T	c.(403-405)CCG>CTG	p.P135L		NM_004498	NP_004489	Q9UBC0	HNF6_HUMAN	one cut homeobox 1	135	Poly-His.				endocrine pancreas development	nucleus	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding				0				all cancers(107;0.0708)		gtggtggtgcgggtggtggtg	0.478													9	13					0	0	0.000673444	0	0
UNC13C	440279	broad.mit.edu	37	15	54792317	54792317	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr15:54792317G>A	uc002ack.2	+	19	5101	c.5101G>A	c.(5101-5103)GAA>AAA	p.E1701K		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1701	MHD1.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AGATGAAAACGAAGATGTGTC	0.348													6	8					0	0	0.000274275	0	0
NEDD4	4734	broad.mit.edu	37	15	56155188	56155188	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr15:56155188C>T	uc002adj.2	-	5	2154	c.1854G>A	c.(1852-1854)GAG>GAA	p.E618E	NEDD4_uc002adl.2_Silent_p.E199E|NEDD4_uc002adi.2_Silent_p.E546E|NEDD4_uc010ugj.1_Silent_p.E602E|NEDD4_uc010bfm.2_Silent_p.E601E|NEDD4_uc002adk.2_RNA	NM_198400	NP_006145	P46934	NEDD4_HUMAN	neural precursor cell expressed, developmentally	618	WW 1.|Mediates interaction with TNIK (By similarity).				development involved in symbiotic interaction|glucocorticoid receptor signaling pathway|negative regulation of sodium ion transport|negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage|negative regulation of vascular endothelial growth factor receptor signaling pathway|neuron projection development|positive regulation of nucleocytoplasmic transport|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein catabolic process|progesterone receptor signaling pathway|protein K63-linked ubiquitination|protein targeting to lysosome|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|receptor internalization|regulation of dendrite morphogenesis|response to calcium ion|transmission of virus	apicolateral plasma membrane|cell cortex|chromatin|cytosol|perinuclear region of cytoplasm|ubiquitin ligase complex	beta-2 adrenergic receptor binding|phosphoserine binding|phosphothreonine binding|proline-rich region binding|protein domain specific binding|RNA polymerase binding|sodium channel inhibitor activity|ubiquitin binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|breast(1)	4				all cancers(107;0.0299)|GBM - Glioblastoma multiforme(80;0.113)		TATCCTGCCTCTCTTCCCACC	0.473													11	20					0	0	0.000978159	0	0
SNX1	6642	broad.mit.edu	37	15	64418364	64418364	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr15:64418364G>A	uc002amv.2	+	6	633	c.597G>A	c.(595-597)GAG>GAA	p.E199E	SNX1_uc010bgv.2_5'UTR|SNX1_uc010uio.1_Silent_p.E199E|SNX1_uc002amw.2_Silent_p.E199E|SNX1_uc002amx.2_Silent_p.E134E|SNX1_uc002amy.2_Silent_p.E128E|SNX1_uc010bgw.2_Silent_p.E101E	NM_003099	NP_003090	Q13596	SNX1_HUMAN	sorting nexin 1 isoform a	199	PX.				cell communication|early endosome to Golgi transport|endocytosis|intracellular protein transport	early endosome membrane|Golgi apparatus	phosphatidylinositol binding|protein binding|protein transporter activity				0						AGCTTTCCGAGAAGCACTCTC	0.453													18	19					0	0	0.00074312	0	0
GLCE	26035	broad.mit.edu	37	15	69560649	69560649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr15:69560649C>T	uc002ary.1	+	5	1148	c.920C>T	c.(919-921)TCC>TTC	p.S307F		NM_015554	NP_056369	O94923	GLCE_HUMAN	D-glucuronyl C5-epimerase	307	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process|heparin biosynthetic process	Golgi membrane|integral to membrane	UDP-glucuronate 5'-epimerase activity			ovary(2)	2						GGAAGTGTGTCCGTGGTTCTA	0.373													17	27					0	0	0.000566183	0	0
SCAMP5	192683	broad.mit.edu	37	15	75310792	75310792	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr15:75310792G>A	uc002azk.1	+	6	591	c.429G>A	c.(427-429)ACG>ACA	p.T143T	SCAMP5_uc002azl.1_Silent_p.T143T|SCAMP5_uc002azm.1_Silent_p.T143T|SCAMP5_uc002azn.1_Silent_p.T151T|SCAMP5_uc010uly.1_Silent_p.T72T	NM_138967	NP_620417	Q8TAC9	SCAM5_HUMAN	secretory carrier membrane protein 5	143	Extracellular (Potential).				exocytosis|negative regulation of endocytosis|positive regulation of calcium ion-dependent exocytosis|positive regulation of cytokine secretion|protein transport|response to endoplasmic reticulum stress	cell junction|integral to membrane|recycling endosome membrane|synaptic vesicle membrane|trans-Golgi network membrane	protein binding			ovary(1)	1						TCTTCGGAACGAACATTGGCT	0.592													153	63					0	0	0.000781405	0	0
Unknown	0	broad.mit.edu	37	15	76071784	76071784	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr15:76071784C>T	uc010umm.1	+	3	296	c.219C>T	c.(217-219)ATC>ATT	p.I73I						SubName: Full=cDNA FLJ59077, highly similar to Golgin subfamily A member 6;																		CCGCAATAATCAATCAACTCA	0.502													8	6					0	0	0.000274275	0	0
AGPHD1	123688	broad.mit.edu	37	15	78819883	78819883	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr15:78819883C>T	uc010unc.1	+	4	752	c.639C>T	c.(637-639)ACC>ACT	p.T213T	AGPHD1_uc002bdt.2_Silent_p.T213T|AGPHD1_uc010ble.2_Silent_p.T213T	NM_001013619	NP_001013641	A2RU49	AGPD1_HUMAN	aminoglycoside phosphotransferase domain	213						cytoplasm	kinase activity				0						AAGTAATGACCAAATTAAGTC	0.368													18	95					0	0	0.00152264	0	0
FAH	2184	broad.mit.edu	37	15	80472540	80472540	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr15:80472540C>T	uc002bfj.2	+	13	1117	c.1035C>T	c.(1033-1035)CTC>CTT	p.L345L	FAH_uc002bfk.1_Silent_p.L345L|FAH_uc002bfm.1_Silent_p.L345L|FAH_uc002bfn.1_Silent_p.L275L|FAH_uc010bln.1_RNA|FAH_uc010blo.1_Intron	NM_000137	NP_000128	P16930	FAAA_HUMAN	fumarylacetoacetase	345					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	fumarylacetoacetase activity|metal ion binding				0						CGGGGGACCTCCTGGCTTCTG	0.642									Tyrosinemia_type_1				8	30					0	0	0.000274275	0	0
ZNF592	9640	broad.mit.edu	37	15	85327175	85327176	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr15:85327175_85327176GG>AA	uc002bld.2	+	4	1605_1606	c.1269_1270GG>AA	c.(1267-1272)GGGGAT>GGAAAT	p.D424N	ZNF592_uc010upb.1_RNA	NM_014630	NP_055445	Q92610	ZN592_HUMAN	zinc finger protein 592	424					cell death|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(2)	6			BRCA - Breast invasive adenocarcinoma(143;0.0587)			AGATGCCAGGGGATGAGGTGCC	0.594													21	11					0	0	6.4e-05	0	0
NTRK3	4916	broad.mit.edu	37	15	88420243	88420243	+	Silent	SNP	A	G	G	rs78821883		TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr15:88420243A>G	uc002bme.1	-	19	2605	c.2443T>C	c.(2443-2445)TTG>CTG	p.L815L	NTRK3_uc002bmh.2_Silent_p.L793L|NTRK3_uc002bmf.1_Silent_p.L801L	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	815	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			TTGATGTTCAACCGCTGCTGT	0.547			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			15	41					0	0	0.000219431	0	0
PEX11A	8800	broad.mit.edu	37	15	90226924	90226924	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr15:90226924G>A	uc002boi.2	-	3	523	c.428C>T	c.(427-429)TCC>TTC	p.S143F	PEX11A_uc010upy.1_RNA	NM_003847	NP_003838	O75192	PX11A_HUMAN	peroxisomal biogenesis factor 11 alpha	143	Lumenal (Potential).				cellular lipid metabolic process|peroxisome fission|signal transduction	integral to peroxisomal membrane					0	Lung NSC(78;0.0237)|all_lung(78;0.0478)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|BRCA - Breast invasive adenocarcinoma(143;0.128)			CATCTGCAGGGAGATTTCATA	0.493													37	91					0	0	0.00058488	0	0
PCSK6	5046	broad.mit.edu	37	15	101929704	101929704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr15:101929704C>T	uc002bwy.2	-	10	1589	c.1275G>A	c.(1273-1275)ATG>ATA	p.M425I	PCSK6_uc010bpd.2_Missense_Mutation_p.M295I|PCSK6_uc010bpe.2_Missense_Mutation_p.M425I|PCSK6_uc002bxa.2_Missense_Mutation_p.M425I|PCSK6_uc002bxb.2_Missense_Mutation_p.M425I|PCSK6_uc002bxc.1_Missense_Mutation_p.M425I|PCSK6_uc002bxd.1_Missense_Mutation_p.M425I|PCSK6_uc002bxe.2_Missense_Mutation_p.M425I|PCSK6_uc002bxg.1_Missense_Mutation_p.M425I	NM_002570	NP_002561	P29122	PCSK6_HUMAN	paired basic amino acid cleaving system 4	425	Catalytic.				glycoprotein metabolic process|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|regulation of BMP signaling pathway|secretion by cell	cell surface|endomembrane system|endoplasmic reticulum|extracellular matrix|extracellular space|Golgi lumen|membrane|soluble fraction	eukaryotic cell surface binding|heparin binding|nerve growth factor binding|serine-type endopeptidase activity			pancreas(2)	2	Lung NSC(78;0.00102)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000803)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			TGCCCGCCACCATGGGGGCAG	0.463													17	90					0	0	0.000958276	0	0
TBL3	10607	broad.mit.edu	37	16	2027165	2027165	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr16:2027165C>T	uc002cnu.1	+	15	1653	c.1551C>T	c.(1549-1551)TTC>TTT	p.F517F	TBL3_uc002cnv.1_Silent_p.F403F|TBL3_uc010bsb.1_Silent_p.F306F|TBL3_uc010bsc.1_Silent_p.F384F|TBL3_uc010uvt.1_5'UTR|TBL3_uc002cnw.1_5'Flank	NM_006453	NP_006444	Q12788	TBL3_HUMAN	transducin beta-like 3	517					G-protein signaling, coupled to cGMP nucleotide second messenger|rRNA processing	nucleolus|small-subunit processome	receptor signaling protein activity				0						TGGGTGTCTTCTCAGGCCACC	0.662													18	17					0	0	0.00074312	0	0
MEFV	4210	broad.mit.edu	37	16	3298935	3298935	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr16:3298935C>T	uc002cun.1	-	4	1370	c.1330G>A	c.(1330-1332)GGG>AGG	p.G444R		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	444					inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	TTCTCCTCCCCATAGGATCGC	0.532													42	99					0	0	0.000781405	0	0
HMOX2	3163	broad.mit.edu	37	16	4556932	4556932	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr16:4556932C>T	uc010bts.2	+	3	294	c.123C>T	c.(121-123)ACC>ACT	p.T41T	HMOX2_uc002cwr.3_Silent_p.T41T|HMOX2_uc002cwq.3_Silent_p.T41T|HMOX2_uc002cws.3_Silent_p.T95T|HMOX2_uc010btt.2_Silent_p.T41T|HMOX2_uc002cwt.2_Silent_p.T41T	NM_001127206	NP_001120678	P30519	HMOX2_HUMAN	heme oxygenase (decyclizing) 2	41					cellular iron ion homeostasis|heme catabolic process|heme oxidation|response to hypoxia|transmembrane transport	endoplasmic reticulum membrane|microsome|plasma membrane	electron carrier activity|heme oxygenase (decyclizing) activity|metal ion binding|protein binding				0					NADH(DB00157)	AGGAAGGGACCAAGGAAGCAC	0.512											OREG0023582	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	75	51					0	0	0.000781405	0	0
KIAA0430	9665	broad.mit.edu	37	16	15715603	15715603	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr16:15715603G>A	uc002ddr.2	-	12	2819	c.2626C>T	c.(2626-2628)CTC>TTC	p.L876F	KIAA0430_uc002ddq.2_Missense_Mutation_p.L710F|KIAA0430_uc010uzv.1_Missense_Mutation_p.L872F|KIAA0430_uc010uzw.1_Missense_Mutation_p.L875F	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	875						peroxisome	nucleotide binding|RNA binding				0						AGTAAAGAGAGTGATTTGCTG	0.393													25	25					0	0	0.00209593	0	0
ACSM2A	123876	broad.mit.edu	37	16	20471449	20471449	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr16:20471449C>T	uc010bwe.2	+	3	252	c.13C>T	c.(13-15)CGA>TGA	p.R5*	ACSM2A_uc010bwd.1_RNA|ACSM2A_uc010vax.1_Intron|ACSM2A_uc002dhf.3_Nonsense_Mutation_p.R5*|ACSM2A_uc002dhg.3_Nonsense_Mutation_p.R5*|ACSM2A_uc010vay.1_Intron	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	5					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						GCATTGGCTGCGAAAAGTTCA	0.488													11	9					0	0	0.00136819	0	0
PRKCB	5579	broad.mit.edu	37	16	24202548	24202548	+	Silent	SNP	A	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr16:24202548A>G	uc002dmd.2	+	16	2057	c.1860A>G	c.(1858-1860)AAA>AAG	p.K620K	PRKCB_uc002dme.2_Silent_p.K620K	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	620	AGC-kinase C-terminal.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	ATAAGCCAAAAGCTGTAAGTA	0.473													3	94					0	0	0.00024832	0	0
LCMT1	51451	broad.mit.edu	37	16	25175983	25175983	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr16:25175983C>A	uc002dnx.1	+	7	792	c.634C>A	c.(634-636)CTC>ATC	p.L212I	LCMT1_uc002dny.1_Missense_Mutation_p.L157I|LCMT1_uc002dnz.1_Missense_Mutation_p.L112I|LCMT1_uc002doa.1_Missense_Mutation_p.L57I	NM_016309	NP_057393	Q9UIC8	LCMT1_HUMAN	leucine carboxyl methyltransferase 1 isoform a	212							protein binding|protein C-terminal carboxyl O-methyltransferase activity|S-adenosylmethionine-dependent methyltransferase activity				0				GBM - Glioblastoma multiforme(48;0.0336)	L-Leucine(DB00149)	GTCCGCAAACCTCCTGAAGTG	0.443													20	49					1.00905e-13	5.51123e-13	0.00121646	1	0
ZNF629	23361	broad.mit.edu	37	16	30793710	30793710	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr16:30793710G>A	uc002dzs.1	-	3	2147	c.1939C>T	c.(1939-1941)CAG>TAG	p.Q647*		NM_001080417	NP_001073886	Q9UEG4	ZN629_HUMAN	zinc finger protein 629	647					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			Colorectal(24;0.198)			AAGCCCTCCTGACCCTCCGGC	0.657													4	7					0	0	0.00024832	0	0
CYLD	1540	broad.mit.edu	37	16	50813599	50813599	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr16:50813599C>T	uc002egp.1	+	9	1577	c.1162C>T	c.(1162-1164)CTT>TTT	p.L388F	CYLD_uc002ego.2_Missense_Mutation_p.L385F|CYLD_uc010cbs.1_Missense_Mutation_p.L385F|CYLD_uc002egq.1_Missense_Mutation_p.L385F|CYLD_uc002egr.1_Missense_Mutation_p.L385F|CYLD_uc002egs.1_Missense_Mutation_p.L385F	NM_015247	NP_056062	Q9NQC7	CYLD_HUMAN	ubiquitin carboxyl-terminal hydrolase CYLD	388	Interaction with TRIP.				cell cycle|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K63-linked deubiquitination|regulation of microtubule cytoskeleton organization|regulation of mitotic cell cycle|translation|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	cytosol|extrinsic to internal side of plasma membrane|microtubule|perinuclear region of cytoplasm|ribosome	proline-rich region binding|protein kinase binding|structural constituent of ribosome|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			skin(19)|large_intestine(3)|haematopoietic_and_lymphoid_tissue(3)|central_nervous_system(3)	28		all_cancers(37;0.0156)				TGCAAAATCTCTTACAGAGAT	0.373			Mis|N|F|S		cylindroma	cylindroma			Familial_Cylindromatosis|Multiple_Trichoepithelioma_Familial				15	34					0	0	0.000422831	0	0
CHD9	80205	broad.mit.edu	37	16	53265346	53265346	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr16:53265346T>C	uc002ehb.2	+	8	2466	c.2302T>C	c.(2302-2304)TTT>CTT	p.F768L	CHD9_uc002egy.2_Missense_Mutation_p.F768L|CHD9_uc002eha.1_Missense_Mutation_p.F768L|CHD9_uc002ehc.2_Missense_Mutation_p.F768L|CHD9_uc002ehd.2_Missense_Mutation_p.F294L	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	768					cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				AGAAGAACCATTTAACCCAGA	0.308													9	18					0	0	0.000673444	0	0
FAM192A	80011	broad.mit.edu	37	16	57188296	57188296	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr16:57188296G>A	uc010vhk.1	-	7	930	c.671C>T	c.(670-672)TCC>TTC	p.S224F	FAM192A_uc002ekz.3_Missense_Mutation_p.S223F|FAM192A_uc002ekv.3_Missense_Mutation_p.S146F|FAM192A_uc002ekw.3_Missense_Mutation_p.S223F|FAM192A_uc002ekx.3_Missense_Mutation_p.S223F|FAM192A_uc002eky.3_Missense_Mutation_p.S223F	NM_024946	NP_079222	Q9GZU8	F192A_HUMAN	NEFA-interacting nuclear protein NIP30	224						nucleus					0						GCTGGACTCGGAGTCGCTGCT	0.597													11	11					0	0	0.000978159	0	0
CSNK2A2	1459	broad.mit.edu	37	16	58220709	58220709	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr16:58220709G>A	uc002enc.2	-	3	410	c.268C>T	c.(268-270)CGT>TGT	p.R90C		NM_001896	NP_001887	P19784	CSK22_HUMAN	casein kinase 2, alpha prime polypeptide	90	Protein kinase.				axon guidance|Wnt receptor signaling pathway	cytosol|nucleus	ATP binding|protein N-terminus binding|protein serine/threonine kinase activity			central_nervous_system(1)	1						GTTCCACCACGAAGGTTCTCC	0.413													27	38					0	0	0.00178596	0	0
FHOD1	29109	broad.mit.edu	37	16	67281244	67281244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr16:67281244C>T	uc002esl.2	-	1	182	c.70G>A	c.(70-72)GAA>AAA	p.E24K	FHOD1_uc010ced.2_5'UTR|FHOD1_uc010vjh.1_5'UTR|SLC9A5_uc002esm.2_5'Flank|SLC9A5_uc010cee.2_5'Flank|SLC9A5_uc010vji.1_5'Flank	NM_013241	NP_037373	Q9Y613	FHOD1_HUMAN	formin homology 2 domain containing 1	24					actin cytoskeleton organization	cytoplasm|cytoskeleton|nucleus	actin binding			breast(2)|ovary(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.000691)|Epithelial(162;0.00462)|all cancers(182;0.0434)		TCGGTGTCTTCCAGGTACTGC	0.721													5	14					0	0	0.000602214	0	0
DDX19A	55308	broad.mit.edu	37	16	70404177	70404177	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr16:70404177C>T	uc002eyv.2	+	10	1143	c.1072C>T	c.(1072-1074)CAG>TAG	p.Q358*	DDX19B_uc010vly.1_Nonsense_Mutation_p.Q359*|DDX19A_uc002eys.2_Nonsense_Mutation_p.Q359*|DDX19A_uc010cfq.1_Nonsense_Mutation_p.Q113*|DDX19A_uc010cfr.2_Nonsense_Mutation_p.Q208*|DDX19A_uc010cfs.2_Nonsense_Mutation_p.Q181*|DDX19A_uc010vlz.1_Nonsense_Mutation_p.Q327*|DDX19A_uc010vma.1_Nonsense_Mutation_p.Q268*	NM_018332	NP_060802	Q9NUU7	DD19A_HUMAN	DDX19-like protein	358	Helicase C-terminal.				mRNA transport|protein transport|transmembrane transport	cytoplasm|nuclear membrane|nuclear pore	ATP binding|ATP-dependent helicase activity|RNA binding				0		Ovarian(137;0.221)				AGAAGGCCACCAGGTGGCTCT	0.483													14	18					0	0	0.000219431	0	0
PHLPP2	23035	broad.mit.edu	37	16	71748507	71748507	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr16:71748507G>A	uc002fax.2	-	1	198	c.192C>T	c.(190-192)CTC>CTT	p.L64L	PHLPP2_uc010cgf.2_Silent_p.L64L|PHLPP2_uc002fay.1_Silent_p.L64L	NM_015020	NP_055835	Q6ZVD8	PHLP2_HUMAN	PH domain and leucine rich repeat protein	64						cytoplasm|membrane|nucleus	metal ion binding|phosphoprotein phosphatase activity			ovary(1)|central_nervous_system(1)	2						TGCAAAGGACGAGATGTAAGT	0.393													16	18					0	0	0.000566183	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76573616	76573616	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr16:76573616G>A	uc002feu.1	+	22	3606	c.3221G>A	c.(3220-3222)GGA>GAA	p.G1074E	CNTNAP4_uc002fev.1_Missense_Mutation_p.G938E|CNTNAP4_uc010chb.1_Missense_Mutation_p.G1001E|CNTNAP4_uc002fex.1_Missense_Mutation_p.G1077E	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	1074	Extracellular (Potential).|Laminin G-like 4.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						CCCACTCTAGGAAGTTTGCAG	0.323													12	21					0	0	0.000978159	0	0
ATMIN	23300	broad.mit.edu	37	16	81077593	81077594	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr16:81077593_81077594GG>AA	uc002ffz.1	+	4	1508_1509	c.1490_1491GG>AA	c.(1489-1491)GGG>GAA	p.G497E	ATMIN_uc002fga.2_Missense_Mutation_p.G339E|ATMIN_uc010vnn.1_Missense_Mutation_p.G268E|ATMIN_uc002fgb.1_Missense_Mutation_p.G339E	NM_015251	NP_056066	O43313	ATMIN_HUMAN	ATM interactor	497					response to DNA damage stimulus	nucleus	zinc ion binding				0						CAAACCAGTGGGATAGAAAGTC	0.45													17	29					0	0	6.4e-05	0	0
PABPN1L	390748	broad.mit.edu	37	16	88932317	88932317	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr16:88932317G>A	uc010vpe.1	-	2	288	c.288C>T	c.(286-288)GCC>GCT	p.A96A	PABPN1L_uc010vpd.1_Silent_p.A96A|PABPN1L_uc002fmi.2_Silent_p.A96A|PABPN1L_uc002fmj.2_Silent_p.A96A	NM_001080487	NP_001073956	A6NDY0	EPAB2_HUMAN	similar to poly(A)binding protein nuclear-like	96						cytoplasm	nucleotide binding|RNA binding				0						CCTGCTCCATGGCACACACCT	0.687													4	12					0	0	0.000602214	0	0
ANKRD11	29123	broad.mit.edu	37	16	89346549	89346549	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr16:89346549C>T	uc002fmx.1	-	9	6862	c.6401G>A	c.(6400-6402)GGG>GAG	p.G2134E	ANKRD11_uc002fmy.1_Missense_Mutation_p.G2134E|ANKRD11_uc002fnc.1_Missense_Mutation_p.G2134E|ANKRD11_uc002fna.1_5'Flank|ANKRD11_uc002fnb.1_Missense_Mutation_p.G2091E	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	2134	Pro-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		GGAGAAGGGCCCCAGGTCCAG	0.667													4	5					0	0	0.00024832	0	0
ASPA	443	broad.mit.edu	37	17	3397658	3397658	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:3397658C>T	uc010ckg.2	+	6	740	c.649C>T	c.(649-651)CCC>TCC	p.P217S	SPATA22_uc010vrg.1_Intron|ASPA_uc002fvq.2_Missense_Mutation_p.P217S	NM_001128085	NP_001121557	P45381	ACY2_HUMAN	aspartoacylase	217					aspartate catabolic process	cytoplasm|nucleus	aminoacylase activity|aspartoacylase activity|hydrolase activity, acting on ester bonds|metal ion binding				0					L-Aspartic Acid(DB00128)	AGAATTTCCTCCCTGCGCCAT	0.303													88	124					0	0	0.000781405	0	0
ATP2A3	489	broad.mit.edu	37	17	3854905	3854905	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:3854905G>A	uc002fxb.1	-	4	445	c.294C>T	c.(292-294)CTC>CTT	p.L98L	ATP2A3_uc002fwx.1_Silent_p.L98L|ATP2A3_uc002fwy.1_Silent_p.L98L|ATP2A3_uc002fwz.1_Silent_p.L98L|ATP2A3_uc002fxa.1_Silent_p.L98L|ATP2A3_uc002fxc.1_Silent_p.L98L|ATP2A3_uc002fxd.1_Silent_p.L98L	NM_174955	NP_777615	Q93084	AT2A3_HUMAN	ATPase, Ca++ transporting, ubiquitous isoform b	98	Helical; Name=2; (By similarity).				ATP biosynthetic process|platelet activation	integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			ovary(3)|breast(1)|central_nervous_system(1)	5				LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766)		CGTTGGCCACGAGGATCAGCA	0.677													7	9					0	0	0.000157383	0	0
ZZEF1	23140	broad.mit.edu	37	17	3967729	3967730	+	Missense_Mutation	DNP	GG	AA	AA	rs112690569		TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:3967729_3967730GG>AA	uc002fxe.2	-	29	4707_4708	c.4643_4644CC>TT	c.(4642-4644)CCC>CTT	p.P1548L	ZZEF1_uc002fxh.2_5'Flank|ZZEF1_uc002fxi.2_5'UTR|ZZEF1_uc002fxj.1_Missense_Mutation_p.P161L	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	1548							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CTTTCACTGTGGGCACCAGTCT	0.589													36	51					0	0	6.4e-05	0	0
ENO3	2027	broad.mit.edu	37	17	4859297	4859297	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:4859297C>T	uc002gab.3	+	9	1020	c.926C>T	c.(925-927)TCG>TTG	p.S309L	ENO3_uc002gac.3_Missense_Mutation_p.S309L|ENO3_uc010vss.1_Missense_Mutation_p.S266L|ENO3_uc010vst.1_Missense_Mutation_p.S145L	NM_053013	NP_443739	P13929	ENOB_HUMAN	enolase 3	309					gluconeogenesis|glycolysis	phosphopyruvate hydratase complex	magnesium ion binding|phosphopyruvate hydratase activity			ovary(1)	1						TCCTTCCTCTCGGGGGTGAAC	0.502													28	44					0	0	0.00178596	0	0
SLC13A5	284111	broad.mit.edu	37	17	6604350	6604350	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:6604350C>T	uc002gdj.2	-	6	900	c.812G>A	c.(811-813)TGG>TAG	p.W271*	SLC13A5_uc010vtf.1_Nonsense_Mutation_p.W271*|SLC13A5_uc010clq.2_Nonsense_Mutation_p.W228*|SLC13A5_uc002gdk.2_Nonsense_Mutation_p.W254*|SLC13A5_uc002gdl.1_Nonsense_Mutation_p.W253*	NM_177550	NP_808218	Q86YT5	S13A5_HUMAN	solute carrier family 13, member 5 isoform a	271	Helical; (Potential).					integral to membrane	citrate transmembrane transporter activity				0						AAACTGGAGCCACAGCCAGGC	0.473													18	24					0	0	0.00121646	0	0
BCL6B	255877	broad.mit.edu	37	17	6930825	6930825	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:6930825G>A	uc002geg.2	+	9	1384	c.1327G>A	c.(1327-1329)GAC>AAC	p.D443N	BCL6B_uc010clt.1_Missense_Mutation_p.D444N	NM_181844	NP_862827	Q8N143	BCL6B_HUMAN	B-cell CLL/lymphoma 6, member B (zinc finger	443	C2H2-type 5.					nucleus	zinc ion binding			skin(1)	1						CCCACAGTGCGACCCCTGTGG	0.592													14	19					0	0	0.000219431	0	0
C17orf74	201243	broad.mit.edu	37	17	7329697	7329697	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:7329697C>T	uc002ggw.2	+	3	460	c.387C>T	c.(385-387)CGC>CGT	p.R129R	FGF11_uc010vtw.1_Intron	NM_175734	NP_783861	Q0P670	CQ074_HUMAN	hypothetical protein LOC201243	129	Arg-rich.					integral to membrane					0		Prostate(122;0.157)				gccgccgccgccgccaccgcc	0.413													19	28					0	0	0.00188189	0	0
FXR2	9513	broad.mit.edu	37	17	7496405	7496405	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:7496405G>A	uc002gia.1	-	13	1652	c.1425C>T	c.(1423-1425)ACC>ACT	p.T475T	SOX15_uc002ghz.1_5'Flank	NM_004860	NP_004851	P51116	FXR2_HUMAN	fragile X mental retardation syndrome related	475						cytosolic large ribosomal subunit	protein binding|RNA binding				0				READ - Rectum adenocarcinoma(115;0.17)		CTTCCCCTCGGGTTGGGGGAT	0.627													9	17					0	0	0.000442599	0	0
MYH1	4619	broad.mit.edu	37	17	10408560	10408560	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:10408560C>T	uc002gmo.2	-	21	2449	c.2355G>A	c.(2353-2355)CTG>CTA	p.L785L	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	785	IQ.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TCAGCTGGGCCAGCTTCTCAT	0.438													13	13					0	0	0.00185496	0	0
MYH2	4620	broad.mit.edu	37	17	10428305	10428305	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:10428305C>T	uc010coi.2	-	34	4868	c.4740G>A	c.(4738-4740)AGG>AGA	p.R1580R	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.R1580R|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1580	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CAGCAATTTTCCTATCAACCT	0.453													40	50					0	0	0.00222228	0	0
MYH2	4620	broad.mit.edu	37	17	10436640	10436640	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:10436640G>A	uc010coi.2	-	21	2531	c.2403C>T	c.(2401-2403)TTC>TTT	p.F801F	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.F801F|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	801	IQ.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CTCTTGCCAAGAACCCTCTGC	0.458													19	27					0	0	0.00121646	0	0
SMCR7	125170	broad.mit.edu	37	17	18166422	18166422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:18166422C>T	uc002gst.2	+	3	381	c.170C>T	c.(169-171)CCG>CTG	p.P57L	SMCR7_uc002gsu.2_Missense_Mutation_p.P57L|SMCR7_uc010vxq.1_Missense_Mutation_p.P68L	NM_139162	NP_631901	Q96C03	SMCR7_HUMAN	Smith-Magenis syndrome chromosome region,	57						integral to membrane	protein binding				0	all_neural(463;0.228)					GCCACTAGCCCGCGGGATGAG	0.582													12	23					0	0	0.000566183	0	0
UTP6	55813	broad.mit.edu	37	17	30202391	30202391	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:30202391C>T	uc002hgr.2	-	14	1250	c.1167G>A	c.(1165-1167)CTG>CTA	p.L389L	UTP6_uc002hgq.2_Silent_p.L205L|UTP6_uc010cst.2_Silent_p.L238L	NM_018428	NP_060898	Q9NYH9	UTP6_HUMAN	hepatocellular carcinoma-associated antigen 66	389					rRNA processing	nucleolus	binding			ovary(1)	1		all_hematologic(16;0.0149)|Ovarian(249;0.021)|Myeloproliferative disorder(56;0.0255)|Acute lymphoblastic leukemia(14;0.0257)|Breast(31;0.231)				CTGCCACTTCCAGAGCTTCCC	0.443													27	36					0	0	0.000491102	0	0
ACCN1	40	broad.mit.edu	37	17	32483320	32483320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:32483320C>T	uc002hhu.2	-	1	506	c.232G>A	c.(232-234)GAA>AAA	p.E78K		NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	78	Extracellular (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	GCCACCACTTCGTCCACCTTA	0.582													9	18					0	0	0.000673444	0	0
C17orf102	400591	broad.mit.edu	37	17	32904560	32904560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:32904560C>T	uc002hie.1	-	2	579	c.490G>A	c.(490-492)GAA>AAA	p.E164K		NM_207454	NP_997337	A2RUQ5	CQ102_HUMAN	hypothetical protein LOC400591	164										ovary(1)	1						aaagttagttccatgaggaca	0.229													6	11					0	0	0.00116845	0	0
Unknown	0	broad.mit.edu	37	17	37187251	37187251	+	RNA	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:37187251C>T	uc002hrd.1	+	1		c.1093C>T								Homo sapiens cDNA FLJ43826 fis, clone TESTI4002703.																		GACTACAGCTCCTCCAAAACA	0.488													3	3					0	0	6.4e-05	0	0
PPP1R1B	84152	broad.mit.edu	37	17	37791980	37791980	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:37791980G>A	uc002hrz.2	+	6	1032	c.565_splice	c.e6+1	p.E189_splice	PPP1R1B_uc002hsa.2_Splice_Site_p.E200_splice|PPP1R1B_uc010cvx.2_Splice_Site_p.E156_splice|PPP1R1B_uc002hsb.2_Splice_Site_p.E153_splice|PPP1R1B_uc002hsc.2_Splice_Site_p.E153_splice|STARD3_uc010weg.1_5'Flank|STARD3_uc002hsd.2_5'Flank|STARD3_uc010weh.1_5'Flank|STARD3_uc002hse.2_5'Flank|STARD3_uc010wei.1_5'Flank	NM_032192	NP_115568	Q9UD71	PPR1B_HUMAN	protein phosphatase 1, regulatory (inhibitor)						signal transduction	cytosol	protein kinase inhibitor activity|protein phosphatase inhibitor activity				0	Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|BRCA - Breast invasive adenocarcinoma(8;1.04e-44)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			GCACTAAGTGGTAAGGCTTGG	0.637													22	22					0	0	0.000586117	0	0
ZPBP2	124626	broad.mit.edu	37	17	38031536	38031536	+	Silent	SNP	G	A	A	rs35369677	byFrequency	TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:38031536G>A	uc002hte.2	+	7	891	c.738G>A	c.(736-738)CGG>CGA	p.R246R	ZPBP2_uc002htf.2_Silent_p.R224R	NM_199321	NP_955353	Q6X784	ZPBP2_HUMAN	zona pellucida binding protein 2 isoform 2	246					binding of sperm to zona pellucida	extracellular region				ovary(1)	1	Colorectal(19;0.000442)		Lung(15;0.00849)|LUSC - Lung squamous cell carcinoma(15;0.171)			ACTTTTTTCGGAGCCAAGCAT	0.373													19	42					0	0	0.00188189	0	0
PLEKHH3	79990	broad.mit.edu	37	17	40822634	40822635	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:40822634_40822635CC>TT	uc002iau.2	-	10	1977_1978	c.1510_1511GG>AA	c.(1510-1512)GGG>AAG	p.G504K	PLEKHH3_uc010cyl.1_RNA|PLEKHH3_uc002iat.1_RNA|PLEKHH3_uc002iav.2_RNA|PLEKHH3_uc010cym.1_Intron|PLEKHH3_uc002iaw.2_Missense_Mutation_p.G501K	NM_024927	NP_079203	Q7Z736	PKHH3_HUMAN	pleckstrin homology domain containing, family H	504	FERM.				signal transduction	cytoskeleton				large_intestine(1)|ovary(1)	2		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.14)		TGGGGACAGCCCCTCAGGGTGC	0.629													16	20					0	0	6.4e-05	0	0
UBTF	7343	broad.mit.edu	37	17	42284846	42284846	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:42284846C>T	uc002igb.2	-	19	2212	c.2145G>A	c.(2143-2145)GAG>GAA	p.E715E	UBTF_uc002igc.2_Silent_p.E678E|UBTF_uc010czs.2_Silent_p.E715E|UBTF_uc002igd.2_Silent_p.E678E|UBTF_uc010czt.2_Silent_p.E715E	NM_014233	NP_055048	P17480	UBF1_HUMAN	upstream binding transcription factor, RNA	715	Asp/Glu/Ser-rich (acidic).				positive regulation of transcription from RNA polymerase I promoter|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleolus|nucleoplasm	DNA binding|protein binding				0		Breast(137;0.00765)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.114)		CGCTCTCGTCCTCGCTGCTGG	0.493													9	11					0	0	0.000219431	0	0
FZD2	2535	broad.mit.edu	37	17	42636091	42636092	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:42636091_42636092GG>AA	uc002igx.1	+	1	1167_1168	c.1035_1036GG>AA	c.(1033-1038)TGGGTC>TGAATC	p.345_346WV>*I		NM_001466	NP_001457	Q14332	FZD2_HUMAN	frizzled 2 precursor	345_346	Helical; Name=3; (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|epithelial cell differentiation|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|positive regulation of cGMP metabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.189)		CCATCTGGTGGGTCATCCTGTC	0.619													11	31					0	0	6.4e-05	0	0
KIF2B	84643	broad.mit.edu	37	17	51901099	51901099	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:51901099C>T	uc002iua.2	+	1	861	c.705C>T	c.(703-705)ATC>ATT	p.I235I	uc010wna.1_Intron	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	235	Kinesin-motor.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						ACCTGGATATCATCACCGTCC	0.552													18	15					0	0	0.00074312	0	0
MTMR4	9110	broad.mit.edu	37	17	56572663	56572663	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:56572663G>A	uc002iwj.2	-	16	2950	c.2840C>T	c.(2839-2841)CCC>CTC	p.P947L		NM_004687	NP_004678	Q9NYA4	MTMR4_HUMAN	myotubularin related protein 4	947						cytoplasm|membrane	metal ion binding|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CCCAAAGCAGGGCCCTGTGGC	0.567													18	19					0	0	0.00121646	0	0
TEX14	56155	broad.mit.edu	37	17	56665017	56665017	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:56665017C>T	uc010dcz.1	-	17	2849	c.2731G>A	c.(2731-2733)GAA>AAA	p.E911K	TEX14_uc002iwr.1_Missense_Mutation_p.E905K|TEX14_uc002iws.1_Missense_Mutation_p.E905K|TEX14_uc010dda.1_Missense_Mutation_p.E685K	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	911						cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GAAACAGGTTCCACACTCATC	0.413											OREG0024616	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	31					0	0	0.000375601	0	0
APOH	350	broad.mit.edu	37	17	64219848	64219848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:64219848C>T	uc002jfn.3	-	4	442	c.383G>A	c.(382-384)GGA>GAA	p.G128E		NM_000042	NP_000033	P02749	APOH_HUMAN	apolipoprotein H precursor	128	Sushi 2.				blood coagulation, intrinsic pathway|negative regulation of angiogenesis|negative regulation of blood coagulation|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of myeloid cell apoptosis|negative regulation of smooth muscle cell apoptosis|plasminogen activation|positive regulation of lipoprotein lipase activity|triglyceride metabolic process|triglyceride transport	cell surface|chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	eukaryotic cell surface binding|glycoprotein binding|heparin binding|lipoprotein lipase activator activity|phospholipid binding				0			BRCA - Breast invasive adenocarcinoma(6;9.74e-08)			GCTCCATTTTCCTTCCTCAGT	0.333													25	39					0	0	0.00127121	0	0
CACNG4	27092	broad.mit.edu	37	17	65026607	65026607	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:65026607C>T	uc002jft.1	+	4	486	c.471C>T	c.(469-471)ATC>ATT	p.I157I		NM_014405	NP_055220	Q9UBN1	CCG4_HUMAN	voltage-dependent calcium channel gamma-4	157	Helical; (Potential).				membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane	voltage-gated calcium channel activity			central_nervous_system(1)	1	all_cancers(12;9.86e-11)		BRCA - Breast invasive adenocarcinoma(6;1.35e-07)			TCGGTATCATCGTCTACATTT	0.552													41	74					0	0	0.000781405	0	0
CD300A	11314	broad.mit.edu	37	17	72469892	72469892	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:72469892C>T	uc002jkv.2	+	2	579	c.258C>T	c.(256-258)TTC>TTT	p.F86F	CD300A_uc002jkw.2_Intron|CD300A_uc010dfr.2_Intron|CD300A_uc010dfs.2_Intron	NM_007261	NP_009192	Q9UGN4	CLM8_HUMAN	leukocyte membrane antigen	86	Extracellular (Potential).|Ig-like V-type.				cell adhesion	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2						ACCTCAGCTTCACAGTGACCC	0.532													17	22					0	0	0.00074312	0	0
GALK1	2584	broad.mit.edu	37	17	73758912	73758912	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:73758912G>C	uc010wsi.1	-	5	729	c.666C>G	c.(664-666)ATC>ATG	p.I222M	GALK1_uc002jpk.2_Missense_Mutation_p.I222M|GALK1_uc010wsj.1_3'UTR	NM_000154	NP_000145	P51570	GALK1_HUMAN	galactokinase 1	222					galactose catabolic process	cytosol	ATP binding|galactokinase activity|galactose binding				0	all_cancers(13;1.5e-07)		all cancers(21;1.03e-06)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			TAGAGTTGGTGATGAGCACGG	0.642													11	35					0	0	0.000978159	0	0
CANT1	124583	broad.mit.edu	37	17	76989811	76989811	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:76989811C>G	uc002jwn.2	-	6	1466	c.1027G>C	c.(1027-1029)GGC>CGC	p.G343R	CANT1_uc002jwk.2_Missense_Mutation_p.G343R|CANT1_uc002jwj.2_Missense_Mutation_p.G343R|CANT1_uc002jwl.2_Intron|CANT1_uc002jwm.1_RNA	NM_001159772	NP_001153244	Q8WVQ1	CANT1_HUMAN	calcium activated nucleotidase 1	343	Lumenal (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	endoplasmic reticulum membrane|Golgi cisterna membrane|integral to membrane	calcium ion binding|nucleoside-diphosphatase activity|signal transducer activity				0			BRCA - Breast invasive adenocarcinoma(99;0.0362)|OV - Ovarian serous cystadenocarcinoma(97;0.139)			GACGAGAAGCCGTGAGTGGGG	0.632			T	ETV4	prostate								16	21					0	0	0.000566183	0	0
Unknown	0	broad.mit.edu	37	17	78280188	78280188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:78280188C>T	uc002jyf.2	+	12	2490	c.2347C>T	c.(2347-2349)CGT>TGT	p.R783C	uc002jyg.1_Missense_Mutation_p.R514C	NM_020954	NP_066005			hypothetical protein LOC57714																		GCACCTGGGTCGTTTTCCTGC	0.488													21	28					0	0	0.00188189	0	0
RNF213	57674	broad.mit.edu	37	17	78319648	78319648	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr17:78319648C>T	uc002jyh.1	+	4	1955	c.1732C>T	c.(1732-1734)CAT>TAT	p.H578Y		NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			CCTGTGTGATCATATGGTGGA	0.478													43	46					0	0	0.000589545	0	0
COLEC12	81035	broad.mit.edu	37	18	346985	346985	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr18:346985G>C	uc002kkm.2	-	5	852	c.637C>G	c.(637-639)CAG>GAG	p.Q213E		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	213	Extracellular (Potential).				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				TGCTGCACCTGGGTCAGGTTC	0.493													3	59					0	0	0.00024832	0	0
METTL4	64863	broad.mit.edu	37	18	2566903	2566903	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr18:2566903G>A	uc002klh.3	-	2	1093	c.313C>T	c.(313-315)CAT>TAT	p.H105Y		NM_022840	NP_073751	Q8N3J2	METL4_HUMAN	methyltransferase like 4	105					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		methyltransferase activity|nucleic acid binding			kidney(1)|skin(1)	2						CATTCTTTATGAACAGCTGGA	0.328													24	37					0	0	0.00106085	0	0
PTPN2	5771	broad.mit.edu	37	18	12802114	12802114	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr18:12802114G>A	uc002krp.2	-	8	1089	c.895C>T	c.(895-897)CCT>TCT	p.P299S	PTPN2_uc002krl.2_Missense_Mutation_p.P299S|PTPN2_uc002krn.2_Missense_Mutation_p.P322S|PTPN2_uc002kro.2_Missense_Mutation_p.P299S|PTPN2_uc002krm.2_Missense_Mutation_p.P299S	NM_002828	NP_002819	P17706	PTN2_HUMAN	protein tyrosine phosphatase, non-receptor type	299					interferon-gamma-mediated signaling pathway|regulation of interferon-gamma-mediated signaling pathway	endoplasmic reticulum|nucleoplasm	protein binding			skin(2)	2		Lung NSC(161;8.94e-06)				TCAAAGGCAGGAGATAAGTCT	0.318													22	29					0	0	0.000586117	0	0
LAMA3	3909	broad.mit.edu	37	18	21523870	21523871	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr18:21523870_21523871GG>AA	uc002kuq.2	+	69	9231_9232	c.9145_9146GG>AA	c.(9145-9147)GGG>AAG	p.G3049K	LAMA3_uc002kur.2_Missense_Mutation_p.G2993K|LAMA3_uc002kus.3_Missense_Mutation_p.G1440K|LAMA3_uc002kut.3_Missense_Mutation_p.G1384K	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	3049	Laminin G-like 4.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTTTGCACTGGGGACAGATGGG	0.47													11	37					0	0	6.4e-05	0	0
DSG3	1830	broad.mit.edu	37	18	29039894	29039894	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr18:29039894G>A	uc002kws.2	+	6	713	c.604G>A	c.(604-606)GAA>AAA	p.E202K		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	202	Extracellular (Potential).|Cadherin 2.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TGTCTCTCAGGAACCAGCAGG	0.458													11	15					0	0	0.00136819	0	0
C18orf34	374864	broad.mit.edu	37	18	30803134	30803134	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr18:30803134C>T	uc002kxn.2	-	17	2010	c.1868G>A	c.(1867-1869)GGA>GAA	p.G623E	C18orf34_uc010dme.1_Missense_Mutation_p.G137E|C18orf34_uc010xbr.1_Missense_Mutation_p.G623E|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Intron|C18orf34_uc002kxp.2_Missense_Mutation_p.G623E	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	623										ovary(1)	1						CTTTACTTTTCCCACCTTTCT	0.299													7	7					0	0	0.00198382	0	0
ASXL3	80816	broad.mit.edu	37	18	31320290	31320290	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr18:31320290C>T	uc010dmg.1	+	11	2977	c.2922C>T	c.(2920-2922)ATC>ATT	p.I974I	ASXL3_uc002kxq.2_Silent_p.I681I	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	974					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						GCTTTGGAATCTGTAAGGAAA	0.443													4	9					0	0	0.000602214	0	0
SETBP1	26040	broad.mit.edu	37	18	42531392	42531392	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr18:42531392C>T	uc010dni.2	+	4	2383	c.2087C>T	c.(2086-2088)CCA>CTA	p.P696L		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	696						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		AAAGCTCCCCCAGAGACCAGC	0.488									Schinzel-Giedion_syndrome				5	13					0	0	0.00116845	0	0
MBD1	4152	broad.mit.edu	37	18	47803466	47803466	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr18:47803466G>A	uc010dow.1	-	3	656	c.219C>T	c.(217-219)GCC>GCT	p.A73A	MBD1_uc002lef.2_5'Flank|MBD1_uc002leg.2_Silent_p.A73A|MBD1_uc010xdi.1_Silent_p.A99A|MBD1_uc002leh.3_Silent_p.A73A|MBD1_uc002len.2_Silent_p.A73A|MBD1_uc002lei.3_Silent_p.A73A|MBD1_uc002lej.3_Silent_p.A73A|MBD1_uc002lek.3_Silent_p.A73A|MBD1_uc002lel.3_Silent_p.A73A|MBD1_uc002lem.3_Silent_p.A73A|MBD1_uc010xdj.1_Silent_p.A73A|MBD1_uc010xdk.1_Silent_p.A73A|MBD1_uc010dox.1_Silent_p.A73A|MBD1_uc002leo.2_Silent_p.A73A	NM_015846	NP_056671	Q9UIS9	MBD1_HUMAN	methyl-CpG binding domain protein 1 isoform 1	73					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|nuclear speck	methyl-CpG binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						GTACCTTGGGGGCTGGATAGC	0.532													4	12					0	0	0.000602214	0	0
NETO1	81832	broad.mit.edu	37	18	70526090	70526090	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr18:70526090C>T	uc002lkw.2	-	4	724	c.440G>A	c.(439-441)GGA>GAA	p.G147E	NETO1_uc002lkx.1_Missense_Mutation_p.G146E|NETO1_uc002lky.1_Missense_Mutation_p.G147E|NETO1_uc002lkz.2_Missense_Mutation_p.G146E	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	147	CUB 1.|Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		AGCTGAAAATCCCATAGATTC	0.328													17	22					0	0	0.000958276	0	0
DAZAP1	26528	broad.mit.edu	37	19	1434783	1434783	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:1434783C>T	uc002lsn.2	+	12	1285	c.1096C>T	c.(1096-1098)CCC>TCC	p.P366S	DAZAP1_uc002lsm.2_3'UTR|DAZAP1_uc002lso.2_Missense_Mutation_p.P365S|DAZAP1_uc002lsl.1_Missense_Mutation_p.P365S	NM_018959	NP_061832	Q96EP5	DAZP1_HUMAN	DAZ associated protein 1 isoform b	366	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleotide binding|RNA binding			breast(1)	1		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTTCTCAGACCCCAGCCAGCA	0.582													8	20					0	0	0.000442599	0	0
ZNF556	80032	broad.mit.edu	37	19	2877867	2877867	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:2877867G>A	uc002lwp.1	+	4	998	c.911G>A	c.(910-912)CGA>CAA	p.R304Q	ZNF556_uc002lwq.2_Missense_Mutation_p.R303Q	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	304	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCTTTCAACGACACGTGAGA	0.507													13	22					0	0	0.00136819	0	0
TLE6	79816	broad.mit.edu	37	19	2991913	2991913	+	Silent	SNP	G	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:2991913G>T	uc002lwu.2	+	13	1348	c.948G>T	c.(946-948)CCG>CCT	p.P316P	TLE6_uc002lwt.2_Silent_p.P439P|TLE6_uc010dtg.2_Silent_p.P439P|TLE6_uc002lwv.2_Silent_p.P220P	NM_024760	NP_079036	Q9H808	TLE6_HUMAN	transducin-like enhancer of split 6 isoform 2	316	WD 4.				regulation of transcription, DNA-dependent	nucleus				ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGGGGGTCCGGATGCCTGTC	0.582													4	26					0.00116845	0.00621621	0.00116845	1	0
ATCAY	85300	broad.mit.edu	37	19	3905638	3905638	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:3905638G>A	uc002lyy.3	+	4	773	c.343G>A	c.(343-345)GAA>AAA	p.E115K	ATCAY_uc010xhz.1_Missense_Mutation_p.E121K	NM_033064	NP_149053	Q86WG3	ATCAY_HUMAN	caytaxin	115					transport		protein binding			breast(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00485)|STAD - Stomach adenocarcinoma(1328;0.183)		GAATGGCAACGAACTGGAGTG	0.577													17	16					0	0	0.000958276	0	0
C3	718	broad.mit.edu	37	19	6694622	6694622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:6694622C>T	uc002mfm.2	-	24	3036	c.2974G>A	c.(2974-2976)GAG>AAG	p.E992K	C3_uc002mfl.2_5'Flank	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	992					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		ACGGCATCCTCTGTCATCTGG	0.632													8	17					0	0	0.000157383	0	0
MUC16	94025	broad.mit.edu	37	19	9077155	9077155	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:9077155C>T	uc002mkp.2	-	3	10495	c.10291G>A	c.(10291-10293)GAT>AAT	p.D3431N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3432	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GATGTCTGATCTGACCAAGAA	0.453													27	33					0	0	0.001512	0	0
ICAM4	3386	broad.mit.edu	37	19	10398009	10398009	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:10398009G>A	uc002mns.1	+	1	360	c.321G>A	c.(319-321)TGG>TGA	p.W107*	ICAM4_uc002mnr.1_Nonsense_Mutation_p.W107*|ICAM4_uc002mnt.1_Nonsense_Mutation_p.W107*|ICAM5_uc002mnu.3_5'Flank	NM_001544	NP_001535	Q14773	ICAM4_HUMAN	intercellular adhesion molecule 4 isoform 1	107	Ig-like C2-type 1.|Extracellular (Potential).				cell-cell adhesion|regulation of immune response	extracellular region|integral to membrane|plasma membrane	integrin binding			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(20;2.64e-09)|Epithelial(33;4.31e-06)|all cancers(31;9.75e-06)			TGAGGGCCTGGAGCTCCCTCG	0.677													7	8					0	0	0.00198382	0	0
TYK2	7297	broad.mit.edu	37	19	10479086	10479086	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:10479086G>A	uc002moc.3	-	4	580	c.202C>T	c.(202-204)CCT>TCT	p.P68S	TYK2_uc010dxe.2_Intron|TYK2_uc002mod.2_Missense_Mutation_p.P68S	NM_003331	NP_003322	P29597	TYK2_HUMAN	tyrosine kinase 2	68	FERM.				intracellular protein kinase cascade|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|large_intestine(2)|ovary(1)|breast(1)	9			OV - Ovarian serous cystadenocarcinoma(20;1.77e-09)|Epithelial(33;3.92e-06)|all cancers(31;8.95e-06)			AAGCAAGGAGGAGTGATACCT	0.547													15	36					0	0	0.000308642	0	0
DNM2	1785	broad.mit.edu	37	19	10934479	10934479	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:10934479C>T	uc002mps.1	+	17	1961	c.1797C>T	c.(1795-1797)GAC>GAT	p.D599D	DNM2_uc010dxk.2_Intron|DNM2_uc002mpt.1_Silent_p.D599D|DNM2_uc002mpv.1_Silent_p.D595D|DNM2_uc002mpu.1_Silent_p.D595D|DNM2_uc010dxl.1_Silent_p.D599D|DNM2_uc002mpw.2_Silent_p.D328D|DNM2_uc002mpx.1_5'UTR	NM_001005361	NP_001005361	P50570	DYN2_HUMAN	dynamin 2 isoform 2	599	PH.				G2/M transition of mitotic cell cycle|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|post-Golgi vesicle-mediated transport|receptor internalization|signal transduction|synaptic vesicle transport|transferrin transport	cell junction|cytosol|Golgi membrane|microtubule|postsynaptic density|postsynaptic membrane	GTP binding|GTPase activity|microtubule binding			central_nervous_system(2)|skin(2)|ovary(1)|breast(1)	6			Epithelial(33;4.17e-05)|all cancers(31;8.48e-05)			TCTACAAGGACCTGCGGCAGA	0.637													6	34					0	0	0.00116845	0	0
ZNF709	163051	broad.mit.edu	37	19	12577622	12577622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:12577622C>T	uc002mtv.3	-	2	207	c.46G>A	c.(46-48)GAG>AAG	p.E16K	ZNF709_uc002mtw.3_5'UTR|ZNF709_uc002mtx.3_Missense_Mutation_p.E16K	NM_152601	NP_689814	Q8N972	ZN709_HUMAN	zinc finger protein 709 isoform a	16	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCCCACTCCTCCTGGGTGAAG	0.468													26	38					0	0	0.000878237	0	0
ZNF791	163049	broad.mit.edu	37	19	12738711	12738711	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:12738711C>T	uc002mua.2	+	4	530	c.368C>T	c.(367-369)ACT>ATT	p.T123I	ZNF791_uc010xml.1_Missense_Mutation_p.T91I|ZNF791_uc010dyu.1_Missense_Mutation_p.T14I|ZNF791_uc010xmm.1_Missense_Mutation_p.T14I	NM_153358	NP_699189	Q3KP31	ZN791_HUMAN	zinc finger protein 791	123					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						AGGTCTCACACTGGATACGAG	0.423													58	72					0	0	0.000781405	0	0
CASP14	23581	broad.mit.edu	37	19	15164383	15164383	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:15164383G>A	uc010dzv.1	+	3	426	c.118G>A	c.(118-120)GAA>AAA	p.E40K	CASP14_uc002naf.2_Missense_Mutation_p.E40K	NM_012114	NP_036246	P31944	CASPE_HUMAN	caspase 14 precursor	40					apoptosis|cell differentiation|epidermis development|proteolysis	cytoplasm|nucleus	cysteine-type endopeptidase activity			skin(2)|ovary(1)|lung(1)	4						GGATGCTCTGGAACACATGTT	0.542													18	33					0	0	0.00188189	0	0
MYO9B	4650	broad.mit.edu	37	19	17283772	17283773	+	Splice_Site	DNP	GG	AA	AA			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:17283772_17283773GG>AA	uc010eak.2	+	13	2292	c.2140_splice	c.e13+1	p.G714_splice	MYO9B_uc002nfi.2_Splice_Site_p.G714_splice|MYO9B_uc002nfj.1_Splice_Site_p.G714_splice	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1						actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						AAAGGCTGCAGGTGGGAGCTGG	0.554													4	14					0	0	6.4e-05	0	0
UNC13A	23025	broad.mit.edu	37	19	17752257	17752257	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:17752257T>A	uc002nhd.2	-	21	2845	c.2845A>T	c.(2845-2847)ATT>TTT	p.I949F		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	861					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						TCGTCCACAATCTCCTGGGCT	0.567													19	15					0	0	0.00121646	0	0
NDUFA13	51079	broad.mit.edu	37	19	19646238	19646238	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:19646238C>T	uc010xqy.1	+	6	1027	c.768C>T	c.(766-768)TTC>TTT	p.F256F	YJEFN3_uc002nmt.1_Silent_p.F174F|YJEFN3_uc010ecf.1_Silent_p.F124F|YJEFN3_uc002nmu.1_RNA|CILP2_uc002nmv.3_5'Flank|CILP2_uc002nmw.3_5'Flank	NM_015965	NP_057049	Q9P0J0	NDUAD_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	Error:Variant_position_missing_in_Q9P0J0_after_alignment					apoptotic nuclear change|induction of apoptosis by extracellular signals|negative regulation of cell growth|negative regulation of transcription, DNA-dependent|negative regulation of translation|protein import into nucleus|reactive oxygen species metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain complex I|nucleoplasm	ATP binding|NADH dehydrogenase (ubiquinone) activity|protein binding				0					NADH(DB00157)	ACATCCCCTTCCTGAGCTACC	0.642													11	9					0	0	0.00185496	0	0
ZNF568	374900	broad.mit.edu	37	19	37440953	37440953	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:37440953C>T	uc002ofc.2	+	7	1413	c.898C>T	c.(898-900)CAT>TAT	p.H300Y	ZNF568_uc010efg.2_Intron|ZNF568_uc010xtn.1_Intron|ZNF568_uc002ofd.2_Missense_Mutation_p.H224Y|ZNF568_uc010efe.2_Missense_Mutation_p.H224Y|ZNF568_uc010eff.1_Intron	NM_198539	NP_940941	Q3ZCX4	ZN568_HUMAN	zinc finger protein 568	300	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CCACAGAATTCATACTGGGGA	0.378													16	14					0	0	0.000958276	0	0
DLL3	10683	broad.mit.edu	37	19	39989682	39989682	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:39989682A>G	uc002olx.2	+	1	126	c.68A>G	c.(67-69)CAG>CGG	p.Q23R	DLL3_uc010egq.2_Missense_Mutation_p.Q23R|DLL3_uc002olw.2_Missense_Mutation_p.Q23R	NM_016941	NP_058637	Q9NYJ7	DLL3_HUMAN	delta-like 3 protein isoform 1 precursor	23					Notch signaling pathway|skeletal system development	integral to membrane	Notch binding			central_nervous_system(2)|breast(1)	3	all_cancers(60;4.04e-06)|all_lung(34;1.77e-07)|Lung NSC(34;2.09e-07)|all_epithelial(25;1.13e-05)|Ovarian(47;0.159)		Epithelial(26;5.89e-26)|all cancers(26;1.96e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			TTCCTCCCCCAGGTCAGAGCC	0.662													10	31					0	0	0.000673444	0	0
CYP2A6	1548	broad.mit.edu	37	19	41352829	41352829	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:41352829G>A	uc002opl.3	-	5	803	c.782C>T	c.(781-783)CCC>CTC	p.P261L	CYP2A6_uc010ehe.1_Missense_Mutation_p.P57L|CYP2A6_uc010ehf.1_RNA	NM_000762	NP_000753	P11509	CP2A6_HUMAN	cytochrome P450, family 2, subfamily A,	261					coumarin catabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|enzyme binding|heme binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Chlorzoxazone(DB00356)|Diethylstilbestrol(DB00255)|Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Formoterol(DB00983)|Halothane(DB01159)|Letrozole(DB01006)|Methoxsalen(DB00553)|Metyrapone(DB01011)|Nicotine(DB00184)|Pilocarpine(DB01085)|Tolbutamide(DB01124)|Tranylcypromine(DB00752)	TGGGGAATTGGGATCCAGCGT	0.572													18	30					0	0	0.00152264	0	0
CYP2B6	1555	broad.mit.edu	37	19	41518636	41518636	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:41518636A>G	uc002opr.1	+	8	1217	c.1210A>G	c.(1210-1212)AAA>GAA	p.K404E	CYP2A7_uc002opo.2_Intron|CYP2B6_uc010xvu.1_Missense_Mutation_p.K204E	NM_000767	NP_000758	P20813	CP2B6_HUMAN	cytochrome P450, family 2, subfamily B,	404					cellular ketone metabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(20;0.00322)		Bupropion(DB01156)|Butalbital(DB00241)|Carbamazepine(DB00564)|Clopidogrel(DB00758)|Cyclophosphamide(DB00531)|Efavirenz(DB00625)|Ifosfamide(DB01181)|Memantine(DB01043)|Meperidine(DB00454)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Midazolam(DB00683)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicotine(DB00184)|Orphenadrine(DB01173)|Phenytoin(DB00252)|Propofol(DB00818)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Ticlopidine(DB00208)|Troleandomycin(DB01361)	CTACTTTGAAAAACCAGACGC	0.473													34	46					0	0	0.00111076	0	0
CYP2A13	1553	broad.mit.edu	37	19	41600331	41600331	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:41600331C>T	uc002opt.2	+	7	1164	c.1155C>T	c.(1153-1155)CTC>CTT	p.L385L		NM_000766	NP_000757	Q16696	CP2AD_HUMAN	cytochrome P450, family 2, subfamily A,	385					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|heme binding			ovary(2)|skin(1)	3					Clomipramine(DB01242)|Nicotine(DB00184)	ATTTCTTCCTCCCTAAGGTGC	0.552													9	17					0	0	0.000274275	0	0
CEACAM1	634	broad.mit.edu	37	19	43031325	43031325	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:43031325G>A	uc002otv.2	-	2	405	c.292C>T	c.(292-294)CGA>TGA	p.R98*	uc010eif.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron|CEACAM1_uc002otw.2_Nonsense_Mutation_p.R98*|CEACAM1_uc010eij.2_Nonsense_Mutation_p.R98*|CEACAM1_uc002otx.2_Nonsense_Mutation_p.R98*|CEACAM1_uc002oty.2_Nonsense_Mutation_p.R98*|CEACAM1_uc002otz.2_Nonsense_Mutation_p.R98*|CEACAM1_uc010eik.2_Nonsense_Mutation_p.R98*|CEACAM1_uc002oua.2_Nonsense_Mutation_p.R98*|CEACAM1_uc002oub.2_Nonsense_Mutation_p.R98*|CEACAM1_uc002ouc.2_Nonsense_Mutation_p.R98*	NM_001712	NP_001703	P13688	CEAM1_HUMAN	carcinoembryonic antigen-related cell adhesion	98	Ig-like V-type.|Extracellular (Potential).				angiogenesis|cell migration|homophilic cell adhesion|integrin-mediated signaling pathway	extracellular region|integral to plasma membrane|membrane fraction				ovary(1)|central_nervous_system(1)	2		Prostate(69;0.00682)		GBM - Glioblastoma multiforme(486;0.00148)	Arcitumomab(DB00113)	ATTGTCTCTCGACCGCTGTTT	0.483													47	77					0	0	0.000781405	0	0
PSG5	5673	broad.mit.edu	37	19	43679476	43679476	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:43679476C>T	uc002ovu.2	-	4	986	c.855G>A	c.(853-855)AAG>AAA	p.K285K	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Silent_p.K160K|PSG5_uc002ovx.2_Silent_p.K285K|PSG5_uc002ovv.2_Silent_p.K378K|PSG5_uc002ovw.2_Intron	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	285	Ig-like C2-type 2.				female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				GGATAGAGAGCTTTTGTCCTG	0.453													35	50					0	0	0.000692331	0	0
CEACAM19	56971	broad.mit.edu	37	19	45179592	45179592	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:45179592C>T	uc002ozo.3	+	3	954	c.474C>T	c.(472-474)ATC>ATT	p.I158I	CEACAM19_uc002ozp.3_Silent_p.I158I	NM_020219	NP_064604	Q7Z692	CEA19_HUMAN	carcinoembryonic antigen-related cell adhesion	158	Helical; (Potential).					integral to membrane					0	Lung NSC(12;0.00308)|all_lung(12;0.00806)	Prostate(69;0.0376)				ACGCTGGGATCCTGGCGGCCA	0.577													48	103					0	0	0.000781405	0	0
CCDC61	729440	broad.mit.edu	37	19	46511509	46511509	+	Silent	SNP	C	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:46511509C>G	uc002pdw.2	+	6	672	c.672C>G	c.(670-672)GGC>GGG	p.G224G		NM_001080402	NP_001073871			coiled-coil domain containing 61											ovary(1)	1		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00221)|GBM - Glioblastoma multiforme(486;0.0233)|Epithelial(262;0.164)		GGCTGGATGGCCAGAACACTC	0.667													3	11					0	0	0.00024832	0	0
SLC8A2	6543	broad.mit.edu	37	19	47935677	47935677	+	Silent	SNP	C	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:47935677C>A	uc002pgx.2	-	9	2414	c.2136G>T	c.(2134-2136)GGG>GGT	p.G712G	SLC8A2_uc010xyq.1_Silent_p.G468G|SLC8A2_uc010xyr.1_Silent_p.G175G|SLC8A2_uc010ele.2_Silent_p.G712G	NM_015063	NP_055878	Q9UPR5	NAC2_HUMAN	solute carrier family 8 member 2 precursor	712	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(1)	4		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)		OV - Ovarian serous cystadenocarcinoma(262;0.000501)|all cancers(93;0.00058)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0457)		CCTCCCGGGACCCGTCCTCCT	0.612													20	34					2.52088e-20	1.39169e-19	0.000375601	1	0
SLC8A2	6543	broad.mit.edu	37	19	47935679	47935679	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:47935679C>A	uc002pgx.2	-	9	2412	c.2134G>T	c.(2134-2136)GGG>TGG	p.G712W	SLC8A2_uc010xyq.1_Missense_Mutation_p.G468W|SLC8A2_uc010xyr.1_Missense_Mutation_p.G175W|SLC8A2_uc010ele.2_Missense_Mutation_p.G712W	NM_015063	NP_055878	Q9UPR5	NAC2_HUMAN	solute carrier family 8 member 2 precursor	712	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(1)	4		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)		OV - Ovarian serous cystadenocarcinoma(262;0.000501)|all cancers(93;0.00058)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0457)		TCCCGGGACCCGTCCTCCTCC	0.607													19	31					1.37657e-19	7.58591e-19	0.00188189	1	0
ELSPBP1	64100	broad.mit.edu	37	19	48523108	48523108	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:48523108G>A	uc002pht.2	+	5	643	c.488G>A	c.(487-489)GGA>GAA	p.G163E		NM_022142	NP_071425	Q96BH3	ESPB1_HUMAN	epididymal sperm binding protein 1 precursor	163	Fibronectin type-II 3.				single fertilization	extracellular region					0		all_cancers(25;8.7e-09)|all_lung(116;1.15e-06)|all_epithelial(76;1.17e-06)|Lung NSC(112;2.56e-06)|all_neural(266;0.0138)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000253)|all cancers(93;0.00129)|Epithelial(262;0.0314)|GBM - Glioblastoma multiforme(486;0.0606)		GATAAGGATGGAAAGTGGAGT	0.428													10	11					0	0	0.000978159	0	0
IRF3	3661	broad.mit.edu	37	19	50165495	50165495	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:50165495G>A	uc010end.1	-	6	1074	c.692C>T	c.(691-693)TCC>TTC	p.S231F	IRF3_uc002pos.1_5'Flank|IRF3_uc002pot.1_Intron|IRF3_uc002pox.1_Missense_Mutation_p.S231F|IRF3_uc002poy.1_Missense_Mutation_p.S231F|IRF3_uc002pou.2_Missense_Mutation_p.S231F|IRF3_uc002pov.2_Missense_Mutation_p.S85F|IRF3_uc002pow.2_Missense_Mutation_p.S231F|IRF3_uc002poz.1_Missense_Mutation_p.S231F|BCL2L12_uc002ppa.2_5'Flank|BCL2L12_uc002ppb.2_5'Flank	NM_001571	NP_001562	Q14653	IRF3_HUMAN	interferon regulatory factor 3	231	Involved in HERC5 binding.				interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|response to virus|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytosol|endosome membrane|nucleoplasm|plasma membrane	DNA binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(2)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.02)		TCCCACTTCGGACCCCACCAG	0.642													17	23					0	0	0.000422831	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52131193	52131193	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:52131193C>T	uc002pxe.2	-	5	1030	c.891G>A	c.(889-891)GGG>GGA	p.G297G		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	297	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		GCTCCAAGATCCCGGTATTGG	0.602													30	41					0	0	0.000692331	0	0
ZNF579	163033	broad.mit.edu	37	19	56090016	56090016	+	Silent	SNP	G	C	C			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:56090016G>C	uc002qlh.2	-	2	1043	c.990C>G	c.(988-990)CCC>CCG	p.P330P		NM_152600	NP_689813	Q8NAF0	ZN579_HUMAN	zinc finger protein 579	330					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.106)		TGCCCGCCGCGGGCAGCGGGG	0.751													11	13					0	0	0.000219431	0	0
NLRP11	204801	broad.mit.edu	37	19	56312966	56312966	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:56312966C>T	uc010ygf.1	-	7	2854	c.2143G>A	c.(2143-2145)GAG>AAG	p.E715K	NLRP11_uc002qlz.2_Missense_Mutation_p.E562K|NLRP11_uc002qmb.2_Missense_Mutation_p.E616K|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	715							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		CATGTGGGCTCGTGCAGGATG	0.498													26	37					0	0	0.000491102	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58563958	58563958	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:58563958G>A	uc002qrc.1	+	5	813	c.566G>A	c.(565-567)AGG>AAG	p.R189K		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	189					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		CTGCACACCAGGGCGGAGGCC	0.617													20	29					0	0	0.00152264	0	0
ZNF135	7694	broad.mit.edu	37	19	58573071	58573071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:58573071G>A	uc010yhq.1	+	3	253	c.157G>A	c.(157-159)GTG>ATG	p.V53M	ZNF135_uc002qre.2_Missense_Mutation_p.V53M|ZNF135_uc002qrd.1_Missense_Mutation_p.V11M|ZNF135_uc002qrf.2_Missense_Mutation_p.V11M|ZNF135_uc002qrg.2_Missense_Mutation_p.V11M|ZNF135_uc010yhr.1_Intron	NM_003436	NP_003427	B4DHH9	B4DHH9_HUMAN	zinc finger protein 135 isoform 2	53					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0161)		TCTGGTCTCTGTGGGTAAGGC	0.512													42	61					0	0	0.000781405	0	0
ZNF135	7694	broad.mit.edu	37	19	58578659	58578659	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:58578659C>T	uc010yhq.1	+	5	939	c.843C>T	c.(841-843)CCC>CCT	p.P281P	ZNF135_uc002qre.2_Silent_p.P269P|ZNF135_uc002qrd.1_Silent_p.P227P|ZNF135_uc002qrf.2_Silent_p.P227P|ZNF135_uc002qrg.2_Silent_p.P239P|ZNF135_uc010yhr.1_Silent_p.P90P	NM_003436	NP_003427	B4DHH9	B4DHH9_HUMAN	zinc finger protein 135 isoform 2	281					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0161)		GGGAGAAACCCTATAAATGCA	0.493													15	28					0	0	0.000308642	0	0
MFSD2B	388931	broad.mit.edu	37	2	24239723	24239723	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:24239723G>A	uc002reo.1	+	4	370	c.356G>A	c.(355-357)GGC>GAC	p.G119D	MFSD2B_uc010exz.1_RNA	NM_001080473	NP_001073942	A6NFX1	MFS2B_HUMAN	major facilitator superfamily domain containing	119	Helical; (Potential).				transport	integral to membrane				ovary(2)	2						AGGGTGCTGGGCTGCACCCCC	0.657													18	10					0	0	0.00188189	0	0
IFT172	26160	broad.mit.edu	37	2	27684212	27684212	+	Missense_Mutation	SNP	C	T	T	rs148237432		TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:27684212C>T	uc002rku.2	-	22	2417	c.2366G>A	c.(2365-2367)CGA>CAA	p.R789Q		NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	789					cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					CAGTTCCTCTCGGGTCAGCAC	0.567													29	26					0	0	0.001512	0	0
TRMT61B	55006	broad.mit.edu	37	2	29092696	29092696	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:29092696G>A	uc002rmm.2	-	1	480	c.448C>T	c.(448-450)CCC>TCC	p.P150S	TRMT61B_uc002rmn.2_Missense_Mutation_p.P150S|TRMT61B_uc010ezk.2_RNA	NM_017910	NP_060380	Q9BVS5	TR61B_HUMAN	tRNA methyltransferase 61 homolog B	150							tRNA (adenine-N1-)-methyltransferase activity				0						GCCTGAAAGGGTCTCTCTCTG	0.488													18	18					0	0	0.00152264	0	0
BIRC6	57448	broad.mit.edu	37	2	32800257	32800257	+	Silent	SNP	G	A	A	rs34145838		TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:32800257G>A	uc010ezu.2	+	66	13313	c.13179G>A	c.(13177-13179)CGG>CGA	p.R4393R		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	4393					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					CACTCTATCGGGCACTGCTGG	0.458													59	104					0	0	0.000781405	0	0
SOCS5	9655	broad.mit.edu	37	2	46986148	46986148	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:46986148C>G	uc002rvf.2	+	2	643	c.479C>G	c.(478-480)TCT>TGT	p.S160C	SOCS5_uc010yoe.1_Missense_Mutation_p.S129C|SOCS5_uc002rvg.2_Missense_Mutation_p.S160C	NM_014011	NP_054730	O75159	SOCS5_HUMAN	suppressor of cytokine signaling 5	160					cell growth|cytokine-mediated signaling pathway|intracellular signal transduction|negative regulation of signal transduction|negative regulation of T-helper 2 cell differentiation|positive regulation of T-helper 1 cell differentiation|regulation of growth					ovary(1)|lung(1)|central_nervous_system(1)	3		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.114)			GGCGTAAGTTCTGTACACGAC	0.468													34	21					0	0	0.00058488	0	0
SNRNP27	11017	broad.mit.edu	37	2	70130361	70130361	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:70130361C>T	uc002sfw.2	+	5	424	c.397C>T	c.(397-399)CAG>TAG	p.Q133*	SNRNP27_uc002sfv.2_RNA|SNRNP27_uc002sfx.2_Intron	NM_006857	NP_006848	Q8WVK2	SNR27_HUMAN	small nuclear ribonucleoprotein 27kDa	133					mRNA processing|RNA splicing	nucleus	nucleic acid binding				0						AAATGTCTCTCAGAAGAGGAA	0.328													33	87					0	0	0.00170553	0	0
ADD2	119	broad.mit.edu	37	2	70933406	70933406	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:70933406G>A	uc002sgz.2	-	3	600	c.135C>T	c.(133-135)TTC>TTT	p.F45F	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Silent_p.F45F|ADD2_uc002sha.2_Silent_p.F45F|ADD2_uc002sgx.2_Silent_p.F45F|ADD2_uc010fdt.1_Silent_p.F45F|ADD2_uc002shc.1_Silent_p.F45F|ADD2_uc002shd.1_Silent_p.F45F|ADD2_uc010fdu.1_Silent_p.F61F	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	45					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						CCATCAGGTTGAAGTCCTGCC	0.677													37	16					0	0	0.00148497	0	0
C2orf78	388960	broad.mit.edu	37	2	74042329	74042329	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:74042329C>T	uc002sjr.1	+	3	1100	c.979C>T	c.(979-981)CCA>TCA	p.P327S		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	327										ovary(2)	2						TGAGAGTAACCCATCACCTGA	0.458													27	19					0	0	0.00178596	0	0
WDR54	84058	broad.mit.edu	37	2	74650500	74650500	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:74650500G>A	uc002slb.2	+	4	400	c.340G>A	c.(340-342)GAT>AAT	p.D114N		NM_032118	NP_115494	Q9H977	WDR54_HUMAN	WD repeat domain 54	114											0						GGACTCTGGAGATGCCTCCCC	0.552													42	27					0	0	0.000509022	0	0
FAHD2B	151313	broad.mit.edu	37	2	97749751	97749751	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:97749751C>T	uc002sxm.2	-	7	967	c.816G>A	c.(814-816)GGG>GGA	p.G272G		NM_199336	NP_955368	Q6P2I3	FAH2B_HUMAN	fumarylacetoacetate hydrolase domain containing	272							hydrolase activity|metal ion binding				0						GGATGACATCCCCTGGGTAAA	0.557													16	7					0	0	0.00074312	0	0
IL1RL2	8808	broad.mit.edu	37	2	102805609	102805609	+	Silent	SNP	C	T	T	rs111747917	byFrequency	TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:102805609C>T	uc002tbs.2	+	3	258	c.132C>T	c.(130-132)TTC>TTT	p.F44F	IL1RL2_uc002tbt.2_Intron	NM_003854	NP_003845	Q9HB29	ILRL2_HUMAN	interleukin 1 receptor-like 2 precursor	44	Extracellular (Potential).|Ig-like C2-type 1.				cellular defense response|innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity			ovary(2)	2						ATTGTACATTCCCTCCCATAA	0.368													47	24					0	0	0.000781405	0	0
IL1RL2	8808	broad.mit.edu	37	2	102805736	102805736	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:102805736T>G	uc002tbs.2	+	3	385	c.259T>G	c.(259-261)TGG>GGG	p.W87G	IL1RL2_uc002tbt.2_Intron	NM_003854	NP_003845	Q9HB29	ILRL2_HUMAN	interleukin 1 receptor-like 2 precursor	87	Extracellular (Potential).|Ig-like C2-type 1.				cellular defense response|innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity			ovary(2)	2						CCCCATGGAATGGGGGGACTC	0.348													13	25					0	0	0.000422831	0	0
BCL2L11	10018	broad.mit.edu	37	2	111881335	111881336	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:111881335_111881336CC>TT	uc002tgv.1	+	2	301_302	c.13_14CC>TT	c.(13-15)CCT>TTT	p.P5F	BCL2L11_uc002tgt.1_Missense_Mutation_p.P5F|BCL2L11_uc002tgu.1_Missense_Mutation_p.P5F|BCL2L11_uc002tgw.1_RNA|BCL2L11_uc002tgx.1_RNA|BCL2L11_uc010fkd.1_RNA|BCL2L11_uc002tgy.1_RNA|BCL2L11_uc002tgz.1_Missense_Mutation_p.P5F|BCL2L11_uc010fke.1_RNA|BCL2L11_uc002tha.1_Missense_Mutation_p.P5F|BCL2L11_uc002thb.1_RNA|BCL2L11_uc002thc.1_RNA|BCL2L11_uc002thd.1_Missense_Mutation_p.P5F	NM_138621	NP_619527	O43521	B2L11_HUMAN	BCL2-like 11 isoform 1	5					activation of pro-apoptotic gene products|induction of apoptosis by extracellular signals|induction of apoptosis by intracellular signals|nerve growth factor receptor signaling pathway|positive regulation of protein homooligomerization|positive regulation of release of cytochrome c from mitochondria	cytosol|endomembrane system|mitochondrial outer membrane|plasma membrane	protein binding|protein binding				0						GGCAAAGCAACCTTCTGATGTA	0.421													31	32					0	0	6.4e-05	0	0
IL1B	3553	broad.mit.edu	37	2	113587996	113587996	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:113587996C>T	uc002tii.1	-	7	839	c.752G>A	c.(751-753)GGA>GAA	p.G251E	IL1B_uc002tih.1_Missense_Mutation_p.G220E	NM_000576	NP_000567	P01584	IL1B_HUMAN	interleukin 1, beta proprotein	251					activation of MAPK activity|anti-apoptosis|apoptosis|cell-cell signaling|cellular response to drug|cellular response to mechanical stimulus|cytokine-mediated signaling pathway|embryo implantation|fever generation|negative regulation of adiponectin secretion|negative regulation of cell proliferation|negative regulation of glucose transport|negative regulation of insulin receptor signaling pathway|negative regulation of lipid catabolic process|negative regulation of MAP kinase activity|positive regulation of angiogenesis|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of cell adhesion molecule production|positive regulation of cell division|positive regulation of fever generation|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of heterotypic cell-cell adhesion|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of interferon-gamma production|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of lipid catabolic process|positive regulation of membrane protein ectodomain proteolysis|positive regulation of mitosis|positive regulation of monocyte chemotactic protein-1 production|positive regulation of myosin light chain kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin secretion|positive regulation of protein export from nucleus|positive regulation of T cell proliferation|positive regulation vascular endothelial growth factor production|regulation of insulin secretion|sequestering of triglyceride|smooth muscle adaptation	cytosol|extracellular space	cytokine activity|growth factor activity|interleukin-1 receptor binding|protein domain specific binding			lung(3)|breast(1)	4					Anakinra(DB00026)|Minocycline(DB01017)|Procaterol(DB01366)	TTTGGTCCCTCCCAGGAAGAC	0.478													54	39					0	0	0.000781405	0	0
AMMECR1L	83607	broad.mit.edu	37	2	128627105	128627105	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:128627105C>T	uc002tpl.2	-	6	898	c.647G>A	c.(646-648)GGG>GAG	p.G216E	AMMECR1L_uc002tpm.2_Missense_Mutation_p.G216E	NM_031445	NP_113633	Q6DCA0	AMERL_HUMAN	AMME chromosomal region gene 1-like	216	AMMECR1.									central_nervous_system(1)	1	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.07)		AATTCGAATCCCATGGACCCC	0.383													20	26					0	0	0.00188189	0	0
YSK4	80122	broad.mit.edu	37	2	135745452	135745452	+	Silent	SNP	C	T	T	rs144042857		TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:135745452C>T	uc002tue.1	-	7	1021	c.990G>A	c.(988-990)TTG>TTA	p.L330L	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Silent_p.L217L|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Silent_p.L58L|YSK4_uc002tui.3_Silent_p.L347L	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	330							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		CAAAAGACACCAAAGACTGCC	0.398													39	29					0	0	0.00195071	0	0
LRP1B	53353	broad.mit.edu	37	2	141777653	141777653	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:141777653C>T	uc002tvj.1	-	12	2780	c.1808G>A	c.(1807-1809)GGC>GAC	p.G603D	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	603	Extracellular (Potential).|LDL-receptor class B 5.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CACAGCAATGCCCTCTACATT	0.363										TSP Lung(27;0.18)			18	9					0	0	0.00188189	0	0
BAZ2B	29994	broad.mit.edu	37	2	160289424	160289425	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:160289424_160289425GG>AA	uc002uao.2	-	9	2095_2096	c.1743_1744CC>TT	c.(1741-1746)TCCCAT>TCTTAT	p.H582Y	BAZ2B_uc002uap.2_Missense_Mutation_p.H580Y|BAZ2B_uc002uas.1_Missense_Mutation_p.H519Y|BAZ2B_uc002uaq.1_Missense_Mutation_p.H510Y|BAZ2B_uc002uar.1_Missense_Mutation_p.H155Y	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	582					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						TTTGCAGGATGGGAGTGATGCT	0.371													24	57					0	0	6.4e-05	0	0
LY75	4065	broad.mit.edu	37	2	160708726	160708726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:160708726G>A	uc002ubc.3	-	21	2938	c.2869C>T	c.(2869-2871)CCT>TCT	p.P957S	LY75_uc002ubb.3_Missense_Mutation_p.P957S|LY75_uc010fos.2_Missense_Mutation_p.P957S	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	957	Extracellular (Potential).				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		TTCTGAAAAGGAATCCATTGC	0.378													21	18					0	0	0.00229938	0	0
SCN9A	6335	broad.mit.edu	37	2	167162345	167162345	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:167162345G>A	uc010fpl.2	-	5	894	c.553C>T	c.(553-555)CGT>TGT	p.R185C	SCN9A_uc002udr.1_Missense_Mutation_p.R56C|SCN9A_uc002uds.1_Missense_Mutation_p.R56C|SCN9A_uc002udt.1_Missense_Mutation_p.R56C	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	185	I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CACGGGTCACGAAGAAAAGTG	0.378													38	35					0	0	0.00148497	0	0
SCN7A	6332	broad.mit.edu	37	2	167263091	167263091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:167263091G>A	uc002udu.1	-	25	4175	c.4048C>T	c.(4048-4050)CTC>TTC	p.L1350F		NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	1350	Helical; Voltage-sensor; Name=S4 of repeat IV; (By similarity).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						ATCCGTGAGAGAAGTATCAGT	0.453													8	31					0	0	0.000274275	0	0
XIRP2	129446	broad.mit.edu	37	2	168105217	168105217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:168105217G>A	uc002udx.2	+	8	7333	c.7315G>A	c.(7315-7317)GAT>AAT	p.D2439N	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.D2264N|XIRP2_uc010fpq.2_Missense_Mutation_p.D2217N|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2264					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TAATAAGAACGATTTTTCCCC	0.408													31	14					0	0	0.000509022	0	0
LRP2	4036	broad.mit.edu	37	2	170148842	170148842	+	Silent	SNP	G	C	C			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:170148842G>C	uc002ues.2	-	7	903	c.690C>G	c.(688-690)CCC>CCG	p.P230P	LRP2_uc010zdf.1_Silent_p.P230P	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	230	LDL-receptor class A 6.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	ATCGGCCACTGGGGCAAGTGA	0.463													3	32					0	0	0.000602214	0	0
AGPS	8540	broad.mit.edu	37	2	178326699	178326699	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:178326699C>A	uc002ull.2	+	9	996	c.949C>A	c.(949-951)CGC>AGC	p.R317S	AGPS_uc010zfb.1_Missense_Mutation_p.R227S	NM_003659	NP_003650	O00116	ADAS_HUMAN	alkyldihydroxyacetone phosphate synthase	317	FAD-binding PCMH-type.				ether lipid biosynthetic process	peroxisomal matrix|peroxisomal membrane|plasma membrane	alkylglycerone-phosphate synthase activity|flavin adenine dinucleotide binding|oxidoreductase activity			ovary(2)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0018)|Epithelial(96;0.00919)|all cancers(119;0.0358)			GGTATCTACTCGCGCATCAGG	0.333													5	72					0.00116845	0.00621621	0.00116845	1	0
TTN	7273	broad.mit.edu	37	2	179458812	179458812	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:179458812C>T	uc010zfg.1	-	246	50828	c.50604G>A	c.(50602-50604)AAG>AAA	p.K16868K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.K10563K|TTN_uc010zfi.1_Silent_p.K10496K|TTN_uc010zfj.1_Silent_p.K10371K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	17795							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGGTGTAGTCTTTATATGAG	0.463													31	27					0	0	0.0024448	0	0
TTN	7273	broad.mit.edu	37	2	179539817	179539817	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:179539817C>T	uc010zfg.1	-	145	30882	c.30658G>A	c.(30658-30660)GAA>AAA	p.E10220K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E6881K|TTN_uc010fre.1_Intron|TTN_uc010zfk.1_5'Flank|TTN_uc002una.1_RNA|TTN_uc010frf.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11147							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGTTTTTCTTCCACCTTCTTA	0.353													7	22					0	0	0.000274275	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187703747	187703747	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:187703747C>T	uc002upu.1	-	4	473	c.433G>A	c.(433-435)GAT>AAT	p.D145N		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	145					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			GAGCAGATATCCTCTGAATCA	0.358													40	39					0	0	0.000781405	0	0
HECW2	57520	broad.mit.edu	37	2	197086952	197086952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:197086952C>T	uc002utm.1	-	24	4312	c.4129G>A	c.(4129-4131)GAA>AAA	p.E1377K	HECW2_uc002utl.1_Missense_Mutation_p.E1021K	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	1377	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						AATACTTCTTCGTTCACAGTG	0.453													12	25					0	0	0.000308642	0	0
GTF3C3	9330	broad.mit.edu	37	2	197654673	197654673	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:197654673T>A	uc002uts.2	-	5	747	c.657A>T	c.(655-657)GAA>GAT	p.E219D	GTF3C3_uc010zgu.1_Missense_Mutation_p.E219D|GTF3C3_uc002utu.2_Missense_Mutation_p.E219D	NM_012086	NP_036218	Q9Y5Q9	TF3C3_HUMAN	general transcription factor IIIC, polypeptide	219	TPR 3.					transcription factor TFIIIC complex	DNA binding|protein binding			ovary(3)|breast(3)|pancreas(1)	7						GTCTAACCCATTCTTCTGTGT	0.348													21	49					0	0	0.000586117	0	0
VWC2L	402117	broad.mit.edu	37	2	215279272	215279272	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:215279272C>T	uc002vet.2	+	2	485	c.355C>T	c.(355-357)CAC>TAC	p.H119Y	VWC2L_uc010zjl.1_Missense_Mutation_p.H119Y	NM_001080500	NP_001073969	B2RUY7	VWC2L_HUMAN	von Willebrand factor C domain-containing	119	VWFC 2.					extracellular region					0						CTGTGAATATCACGGGAAAAA	0.373													14	8					0	0	0.00185496	0	0
VIL1	7429	broad.mit.edu	37	2	219289047	219289047	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:219289047C>T	uc002via.2	+	3	188	c.123C>T	c.(121-123)TTC>TTT	p.F41F	VIL1_uc010zke.1_Intron|VIL1_uc002vib.2_Silent_p.F41F|VIL1_uc002vic.1_Silent_p.F41F	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	41	Gelsolin-like 1.|Core.|Necessary for homodimerization.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GAAGCTTCTTCGATGGTGACT	0.592													35	80					0	0	0.000509022	0	0
RNF25	64320	broad.mit.edu	37	2	219530920	219530920	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:219530920G>A	uc002vit.2	-	6	479	c.391C>T	c.(391-393)CCT>TCT	p.P131S	RNF25_uc010fvw.2_Missense_Mutation_p.P19S	NM_022453	NP_071898	Q96BH1	RNF25_HUMAN	ring finger protein 25	131					positive regulation of NF-kappaB transcription factor activity	cytosol|nucleus	NF-kappaB binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Renal(207;0.0474)		Epithelial(149;6.99e-07)|all cancers(144;0.000129)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGGCCATGAGGGATGTTGTTA	0.512													11	27					0	0	0.000978159	0	0
ATG9A	79065	broad.mit.edu	37	2	220088413	220088413	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:220088413G>A	uc002vke.1	-	10	1679	c.1493C>T	c.(1492-1494)GCC>GTC	p.A498V	ATG9A_uc002vkd.1_RNA|ATG9A_uc002vkf.1_Missense_Mutation_p.A498V	NM_001077198	NP_001070666	Q7Z3C6	ATG9A_HUMAN	APG9 autophagy 9-like 1	498	Cytoplasmic (By similarity).				autophagic vacuole assembly|protein transport	autophagic vacuole membrane|cytoplasmic vesicle|Golgi apparatus|integral to membrane|late endosome membrane				skin(1)	1		Renal(207;0.0474)		Epithelial(149;1.37e-06)|all cancers(144;0.000222)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AATCTCCAGGGCCCGTGGGCG	0.537													24	21					0	0	0.00047179	0	0
SPEG	10290	broad.mit.edu	37	2	220337662	220337662	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:220337662C>T	uc010fwg.2	+	16	3991	c.3991C>T	c.(3991-3993)CAG>TAG	p.Q1331*		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1331	Fibronectin type-III 1.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GGGCTCGGACCAGTGGACGGC	0.657													12	18					0	0	0.000219431	0	0
SPEG	10290	broad.mit.edu	37	2	220355507	220355508	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:220355507_220355508GG>AA	uc010fwg.2	+	38	9214_9215	c.9214_9215GG>AA	c.(9214-9216)GGC>AAC	p.G3072N		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	3072	Protein kinase 2.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GCTGCTACAAGGCCTGGACTAC	0.594													16	45					0	0	6.4e-05	0	0
COL4A3	1285	broad.mit.edu	37	2	228147222	228147222	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:228147222G>A	uc002vom.1	+	32	2792	c.2630G>A	c.(2629-2631)GGA>GAA	p.G877E	COL4A3_uc002von.1_Missense_Mutation_p.G877E|COL4A3_uc002voo.1_Missense_Mutation_p.G877E|COL4A3_uc002vop.1_Missense_Mutation_p.G877E|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	877	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GGATATCCAGGAAATCCGGGA	0.438													26	26					0	0	0.00127121	0	0
WDR69	164781	broad.mit.edu	37	2	228783561	228783561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:228783561G>A	uc002vpn.1	+	11	1118	c.1039G>A	c.(1039-1041)GAA>AAA	p.E347K	WDR69_uc010zlw.1_Missense_Mutation_p.E332K|WDR69_uc002vpo.1_RNA	NM_178821	NP_849143	Q8N136	WDR69_HUMAN	WD repeat domain 69	347	WD 7.									breast(1)	1		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;1.22e-10)|all cancers(144;8.11e-08)|Lung(261;0.011)|LUSC - Lung squamous cell carcinoma(224;0.0148)		TCATGAAGGTGAAATTTCAAA	0.323													27	28					0	0	0.0024448	0	0
SLC16A14	151473	broad.mit.edu	37	2	230911218	230911218	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:230911218G>A	uc002vqd.1	-	4	987	c.624C>T	c.(622-624)CTC>CTT	p.L208L	FBXO36_uc010fxi.1_Intron|SLC16A14_uc002vqe.2_Silent_p.L208L|SLC16A14_uc002vqf.2_Silent_p.L208L	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	208	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		GGGGCCTCATGAGCGCCCCAC	0.552													15	40					0	0	0.000308642	0	0
PSMD1	5707	broad.mit.edu	37	2	232018339	232018339	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:232018339C>T	uc002vrn.1	+	19	2308	c.2177C>T	c.(2176-2178)GCC>GTC	p.A726V	PSMD1_uc002vrm.1_Missense_Mutation_p.A726V|PSMD1_uc010fxu.1_Missense_Mutation_p.A590V	NM_002807	NP_002798	Q99460	PSMD1_HUMAN	proteasome 26S non-ATPase subunit 1	726	PC 9.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	enzyme regulator activity|protein binding			ovary(1)|skin(1)	2		Ovarian(221;0.000626)|Medulloblastoma(418;0.0109)|Renal(207;0.0112)|Lung NSC(271;0.0538)|all_lung(227;0.0713)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;4e-26)|LUSC - Lung squamous cell carcinoma(224;0.0138)|Lung(119;0.0168)	Bortezomib(DB00188)	GATGTCATGGCCAAGTTTGGC	0.353													33	61					0	0	0.00195071	0	0
ARMC9	80210	broad.mit.edu	37	2	232137678	232137678	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:232137678C>T	uc002vrq.3	+	14	1333	c.1221C>T	c.(1219-1221)TAC>TAT	p.Y407Y	ARMC9_uc002vrp.3_Silent_p.Y407Y|ARMC9_uc002vrr.1_RNA	NM_025139	NP_079415	Q7Z3E5	ARMC9_HUMAN	armadillo repeat containing 9	407							binding			ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0744)|all_hematologic(139;0.0749)|Acute lymphoblastic leukemia(138;0.167)|Medulloblastoma(418;0.184)|Lung NSC(271;0.205)		Epithelial(121;1.43e-10)|LUSC - Lung squamous cell carcinoma(224;0.017)|Lung(119;0.0189)		GTCGCCTCTACCTTGCCCAGA	0.468													140	100					0	0	0.000781405	0	0
UGT1A7	54577	broad.mit.edu	37	2	234591029	234591029	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:234591029C>T	uc002vut.2	+	1	446	c.446C>T	c.(445-447)CCT>CTT	p.P149L	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Missense_Mutation_p.P149L	NM_019077	NP_061950	Q9HAW7	UD17_HUMAN	UDP glycosyltransferase 1 family, polypeptide A7	149					drug metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	drug binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;8.93e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000412)|Lung(119;0.00333)|LUSC - Lung squamous cell carcinoma(224;0.00746)		TTTCTCGATCCTTTTGATGCC	0.383													68	44					0	0	0.000781405	0	0
MLPH	79083	broad.mit.edu	37	2	238449075	238449075	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:238449075A>G	uc002vwt.2	+	10	1416	c.1189A>G	c.(1189-1191)AGT>GGT	p.S397G	MLPH_uc002vws.2_Missense_Mutation_p.S254G|MLPH_uc010fyt.1_Missense_Mutation_p.S369G|MLPH_uc002vwu.2_Missense_Mutation_p.S369G|MLPH_uc002vwv.2_Missense_Mutation_p.S329G|MLPH_uc002vww.2_Missense_Mutation_p.S345G|MLPH_uc002vwx.2_Missense_Mutation_p.S253G|MLPH_uc010fyu.2_Missense_Mutation_p.S149G	NM_024101	NP_077006	Q9BV36	MELPH_HUMAN	melanophilin isoform 1	397	Potential.						metal ion binding			ovary(1)	1		Breast(86;0.000381)|Renal(207;0.000966)|Ovarian(221;0.0695)|all_hematologic(139;0.095)|all_lung(227;0.17)|Melanoma(123;0.203)		Epithelial(121;1.17e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.02e-10)|Kidney(56;4.23e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.15e-07)|BRCA - Breast invasive adenocarcinoma(100;0.000439)|Lung(119;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0316)		CAGCAACGTCAGTGACCAGGA	0.627													24	16					0	0	0.000586117	0	0
RNPEPL1	57140	broad.mit.edu	37	2	241513566	241513566	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:241513566C>T	uc002vzi.2	+	5	875	c.282C>T	c.(280-282)ATC>ATT	p.I94I	RNPEPL1_uc010fzf.2_5'UTR|RNPEPL1_uc002vzj.2_5'Flank	NM_018226	NP_060696	Q9HAU8	RNPL1_HUMAN	arginyl aminopeptidase (aminopeptidase B)-like	94					leukotriene biosynthetic process|proteolysis		aminopeptidase activity|metallopeptidase activity|zinc ion binding			large_intestine(1)|skin(1)	2		all_epithelial(40;1.13e-11)|Breast(86;0.000169)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.204)|Melanoma(123;0.238)		Epithelial(32;3.05e-31)|all cancers(36;8.2e-29)|OV - Ovarian serous cystadenocarcinoma(60;8.55e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.12e-06)|Lung(119;0.00168)|Colorectal(34;0.005)|LUSC - Lung squamous cell carcinoma(224;0.00813)|COAD - Colon adenocarcinoma(134;0.0322)		CCTTCCCCATCGTGGCCATGG	0.622													5	33					0	0	0.00198382	0	0
D2HGDH	728294	broad.mit.edu	37	2	242707157	242707157	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:242707157G>A	uc002wce.1	+	10	1512	c.1339G>A	c.(1339-1341)GAG>AAG	p.E447K	D2HGDH_uc010fzq.1_Missense_Mutation_p.E313K|D2HGDH_uc002wcg.1_RNA|D2HGDH_uc002wch.2_RNA|D2HGDH_uc002wci.2_Missense_Mutation_p.E146K	NM_152783	NP_689996	Q8N465	D2HDH_HUMAN	D-2-hydroxyglutarate dehydrogenase precursor	447					2-oxoglutarate metabolic process|cellular protein metabolic process|response to cobalt ion|response to manganese ion|response to zinc ion	mitochondrial matrix	(R)-2-hydroxyglutarate dehydrogenase activity|flavin adenine dinucleotide binding|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;4.59e-33)|all cancers(36;9.89e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.89e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0833)		TGTGACGGCGGAGGCCTTCAG	0.692													12	35					0	0	0.000219431	0	0
NEU4	129807	broad.mit.edu	37	2	242755715	242755715	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:242755715C>T	uc010fzr.2	+	2	120	c.34C>T	c.(34-36)CTC>TTC	p.L12F	NEU4_uc002wcl.2_RNA|NEU4_uc002wcm.2_Missense_Mutation_p.L12F|NEU4_uc002wcn.1_Missense_Mutation_p.L24F|NEU4_uc002wco.1_Missense_Mutation_p.L12F|NEU4_uc002wcp.1_Missense_Mutation_p.L24F	NM_080741	NP_542779	Q8WWR8	NEUR4_HUMAN	sialidase 4	12						lysosomal lumen|organelle inner membrane	exo-alpha-sialidase activity|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;3.84e-33)|all cancers(36;8.08e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.41e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0825)		ACGGACAGTGCTCTTCGAGCG	0.697													22	17					0	0	0.000878237	0	0
BFSP1	631	broad.mit.edu	37	20	17475605	17475605	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr20:17475605G>T	uc002wpo.2	-	8	1151	c.1112C>A	c.(1111-1113)CCA>CAA	p.P371Q	BFSP1_uc002wpp.2_Missense_Mutation_p.P246Q|BFSP1_uc010zrn.1_Missense_Mutation_p.P232Q|BFSP1_uc010zro.1_Missense_Mutation_p.P232Q	NM_001195	NP_001186	Q12934	BFSP1_HUMAN	filensin isoform 1	371	Tail.					cytoplasm|intermediate filament|membrane	structural constituent of cytoskeleton|structural constituent of eye lens			central_nervous_system(1)	1						TTTTCTCCTTGGAACATTCTT	0.418													7	137					0.000442599	0.00237521	0.000442599	1	0
CSTL1	128817	broad.mit.edu	37	20	23421056	23421056	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr20:23421056C>T	uc002wte.2	+	2	398	c.152C>T	c.(151-153)TCC>TTC	p.S51F	CSTL1_uc010zsu.1_RNA|CSTL1_uc010zsv.1_RNA	NM_138283	NP_612140	Q9H114	CST1L_HUMAN	cystatin-like 1 precursor	51						extracellular region	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0993)|Lung NSC(19;0.235)					TTCATTCAATCCTACAACAAT	0.478													55	38					0	0	0.000781405	0	0
XKR7	343702	broad.mit.edu	37	20	30584444	30584444	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr20:30584444C>T	uc002wxe.2	+	3	1098	c.924C>T	c.(922-924)TTC>TTT	p.F308F		NM_001011718	NP_001011718	Q5GH72	XKR7_HUMAN	XK, Kell blood group complex subunit-related	308						integral to membrane				ovary(1)|breast(1)|skin(1)	3			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			GGCACCTGTTCAGCATTGCCG	0.642													24	19					0	0	0.000878237	0	0
DNMT3B	1789	broad.mit.edu	37	20	31375128	31375128	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr20:31375128G>A	uc002wyc.2	+	6	846	c.525G>A	c.(523-525)GAG>GAA	p.E175E	DNMT3B_uc010ztx.1_RNA|DNMT3B_uc010zty.1_RNA|DNMT3B_uc002wyd.2_Silent_p.E175E|DNMT3B_uc002wye.2_Silent_p.E175E|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_RNA|DNMT3B_uc010ztz.1_Silent_p.E133E|DNMT3B_uc010zua.1_Silent_p.E99E|DNMT3B_uc002wyf.2_Silent_p.E187E	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	175	Interaction with DNMT1 and DNMT3A.				negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						ACGACACAGAGGACACACATG	0.657													22	42					0	0	0.000375601	0	0
MYH7B	57644	broad.mit.edu	37	20	33578836	33578836	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr20:33578836C>T	uc002xbi.1	+	22	2313	c.2221C>T	c.(2221-2223)CAG>TAG	p.Q741*		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	699	Myosin head-like.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			GGTGCTACACCAGCTGCGCTG	0.622													16	37					0	0	0.000958276	0	0
MYH7B	57644	broad.mit.edu	37	20	33586218	33586218	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr20:33586218G>A	uc002xbi.1	+	31	4086	c.3994G>A	c.(3994-3996)GAA>AAA	p.E1332K		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	1290	Potential.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			ACTACAGACGGAAAGCGGTGA	0.657													49	35					0	0	0.000781405	0	0
C20orf117	140710	broad.mit.edu	37	20	35443718	35443718	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr20:35443718G>A	uc002xgd.1	-	5	1740	c.1413C>T	c.(1411-1413)CTC>CTT	p.L471L	C20orf117_uc002xge.1_RNA	NM_199181	NP_954650	O94964	K0889_HUMAN	hypothetical protein LOC140710 isoform 2	471											0		Myeloproliferative disorder(115;0.00874)				TGGCATGGATGAGCTTGGTGT	0.637													14	25					0	0	0.000219431	0	0
TTPAL	79183	broad.mit.edu	37	20	43108823	43108823	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr20:43108823C>T	uc002xmc.1	+	3	308	c.184C>T	c.(184-186)CGT>TGT	p.R62C	TTPAL_uc002xmd.1_Missense_Mutation_p.R62C|TTPAL_uc010ggr.1_5'UTR	NM_024331	NP_077307	Q9BTX7	TTPAL_HUMAN	tocopherol (alpha) transfer protein-like	62						intracellular	transporter activity			breast(1)	1						GCAGGCCCTTCGTGACATGGT	0.592													15	9					0	0	0.000422831	0	0
PI3	5266	broad.mit.edu	37	20	43804541	43804541	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr20:43804541C>T	uc002xng.2	+	2	143	c.119C>T	c.(118-120)CCA>CTA	p.P40L		NM_002638	NP_002629	P19957	ELAF_HUMAN	elafin preproprotein	40	SVP-1 clotting 1.|2 X tandem repeats of SVP-1 like motif.				copulation	proteinaceous extracellular matrix	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				GGCCGTGTTCCATTCAATGGA	0.448													26	59					0	0	0.000491102	0	0
PI3	5266	broad.mit.edu	37	20	43804764	43804764	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr20:43804764C>T	uc002xng.2	+	2	366	c.342C>T	c.(340-342)TTC>TTT	p.F114F		NM_002638	NP_002629	P19957	ELAF_HUMAN	elafin preproprotein	114	WAP.				copulation	proteinaceous extracellular matrix	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				TGGCCTGTTTCGTTCCCCAGT	0.567													28	13					0	0	0.00209593	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47628500	47628500	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr20:47628500C>T	uc002xtx.3	+	28	3949	c.3797C>T	c.(3796-3798)TCC>TTC	p.S1266F	ARFGEF2_uc010zyf.1_Missense_Mutation_p.S559F	NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	1266					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			GCCATCGATTCCTTTCAGGAT	0.478													43	95					0	0	0.000680045	0	0
KCNB1	3745	broad.mit.edu	37	20	47990378	47990378	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr20:47990378G>A	uc002xur.1	-	2	1883	c.1719C>T	c.(1717-1719)CCC>CCT	p.P573P	KCNB1_uc002xus.1_Silent_p.P573P	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	573	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			CTGTGCGAGTGGGCAGAGGGG	0.512													24	61					0	0	0.000586117	0	0
TSHZ2	128553	broad.mit.edu	37	20	51872921	51872921	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr20:51872921C>T	uc002xwo.2	+	2	3880	c.2924C>T	c.(2923-2925)TCG>TTG	p.S975L		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	975					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			TCCCGGGTATCGTCGGCTCAG	0.493													13	35					0	0	0.00185496	0	0
ZNF217	7764	broad.mit.edu	37	20	52199275	52199275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr20:52199275G>A	uc002xwq.3	-	1	362	c.91C>T	c.(91-93)CCG>TCG	p.P31S	ZNF217_uc010gij.1_Missense_Mutation_p.P23S	NM_006526	NP_006517	O75362	ZN217_HUMAN	zinc finger protein 217	31					negative regulation of transcription, DNA-dependent	histone deacetylase complex	protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|lung(1)|breast(1)	6	all_cancers(1;6.75e-17)|all_epithelial(1;1.76e-18)|Breast(2;3.83e-14)|Lung NSC(4;9.04e-07)|all_lung(4;2.5e-06)|Ovarian(1;0.0398)		BRCA - Breast invasive adenocarcinoma(1;9.88e-17)|Epithelial(1;1.56e-14)|all cancers(1;9.44e-13)|STAD - Stomach adenocarcinoma(23;0.0474)|Colorectal(105;0.198)			ATCTCCATCGGACTGCCAAGA	0.458													25	46					0	0	0.000720815	0	0
LIPI	149998	broad.mit.edu	37	21	15538740	15538740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr21:15538740C>T	uc002yjm.2	-	5	749	c.739G>A	c.(739-741)GAT>AAT	p.D247N	LIPI_uc010gkw.1_Intron	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	226					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		GGATAAAAATCTATATGTCCC	0.343													14	50					0	0	0.000219431	0	0
CYYR1	116159	broad.mit.edu	37	21	27840879	27840879	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr21:27840879G>A	uc002ymd.2	-	4	728	c.406C>T	c.(406-408)CCA>TCA	p.P136S	CYYR1_uc011ack.1_RNA|CYYR1_uc002yme.2_Missense_Mutation_p.P137S	NM_052954	NP_443186	Q96J86	CYYR1_HUMAN	cysteine and tyrosine-rich 1 protein precursor	136	Cytoplasmic (Potential).					integral to membrane					0						GGACCCTGTGGGGTGGGGGAG	0.537													16	17					0	0	0.000958276	0	0
DOPEY2	9980	broad.mit.edu	37	21	37619841	37619841	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr21:37619841C>T	uc002yvg.2	+	20	4803	c.4724C>T	c.(4723-4725)TCT>TTT	p.S1575F	DOPEY2_uc011aeb.1_Missense_Mutation_p.S1524F|DOPEY2_uc002yvh.2_Missense_Mutation_p.S426F	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	1575					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						GAAAACATTTCTCCAGATTAT	0.353													79	58					0	0	0.000781405	0	0
DSCR9	257203	broad.mit.edu	37	21	38593925	38593925	+	RNA	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr21:38593925G>A	uc010gnk.2	+	1		c.1037G>A								Homo sapiens mRNA, complete cds.												0						TACTCTGCATGAAGCCCTGGG	0.512													15	8					0	0	0.000219431	0	0
DSCAM	1826	broad.mit.edu	37	21	41710220	41710220	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr21:41710220G>A	uc002yyq.1	-	8	2043	c.1591C>T	c.(1591-1593)CCG>TCG	p.P531S	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	531	Extracellular (Potential).|Ig-like C2-type 6.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GAGTAATACGGATAGCCAATC	0.438													15	37					0	0	0.000308642	0	0
BACE2	25825	broad.mit.edu	37	21	42613747	42613747	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr21:42613747C>T	uc002yyw.2	+	4	1083	c.620C>T	c.(619-621)CCA>CTA	p.P207L	BACE2_uc002yyx.2_Missense_Mutation_p.P207L|BACE2_uc002yyy.2_Missense_Mutation_p.P207L	NM_012105	NP_036237	Q9Y5Z0	BACE2_HUMAN	beta-site APP-cleaving enzyme 2 isoform A	207	Extracellular (Potential).				membrane protein ectodomain proteolysis|negative regulation of amyloid precursor protein biosynthetic process|peptide hormone processing	cell surface|endoplasmic reticulum|endosome|Golgi apparatus|integral to membrane	aspartic-type endopeptidase activity			ovary(2)	2		Prostate(19;1.57e-07)|all_epithelial(19;0.0251)				CTCCCGCAGCCATCAAGTTCT	0.577													49	34					0	0	0.000781405	0	0
ITGB2	3689	broad.mit.edu	37	21	46309219	46309219	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr21:46309219C>T	uc002zgd.2	-	12	1893	c.1849G>A	c.(1849-1851)GGC>AGC	p.G617S	ITGB2_uc002zge.2_Missense_Mutation_p.G617S|ITGB2_uc002zgf.3_Missense_Mutation_p.G617S|ITGB2_uc011afl.1_Missense_Mutation_p.G539S|ITGB2_uc010gpw.2_Missense_Mutation_p.G560S|ITGB2_uc002zgg.2_Missense_Mutation_p.G617S	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	617	Extracellular (Potential).|Cysteine-rich tandem repeats.|IV.				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	GAGGGGCAGCCGGGGCACTCC	0.682													17	31					0	0	0.00188189	0	0
CLTCL1	8218	broad.mit.edu	37	22	19196487	19196487	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr22:19196487G>A	uc002zpb.2	-	21	3462	c.3387C>T	c.(3385-3387)ATC>ATT	p.I1129I	CLTCL1_uc011agv.1_Silent_p.I1129I|CLTCL1_uc011agw.1_Silent_p.I1129I|CLTCL1_uc011agt.1_5'Flank|CLTCL1_uc011agu.1_5'Flank|CLTCL1_uc010grm.1_5'UTR|CLTCL1_uc002zpe.2_Silent_p.I89I|CLTCL1_uc002zpd.1_Silent_p.I89I	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	1129	Proximal segment.|Heavy chain arm.				anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					CGTCCCCTCTGATATAGGAGT	0.537			T	?	ALCL								4	12					0	0	0.000602214	0	0
MAPK1	5594	broad.mit.edu	37	22	22127173	22127173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr22:22127173G>A	uc002zvn.2	-	7	1195	c.955C>T	c.(955-957)CCG>TCG	p.P319S	MAPK1_uc002zvo.2_Missense_Mutation_p.P319S|MAPK1_uc010gtk.1_Missense_Mutation_p.P275S	NM_002745	NP_002736	P28482	MK01_HUMAN	mitogen-activated protein kinase 1	319					activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle|epidermal growth factor receptor signaling pathway|ERK1 and ERK2 cascade|induction of apoptosis|innate immune response|insulin receptor signaling pathway|interspecies interaction between organisms|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|Ras protein signal transduction|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription, DNA-dependent	cytosol|nucleoplasm	ATP binding|DNA binding|MAP kinase activity|phosphatase binding|RNA polymerase II carboxy-terminal domain kinase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3	Colorectal(54;0.105)	all_lung(157;3.89e-05)		READ - Rectum adenocarcinoma(21;0.0689)	Arsenic trioxide(DB01169)	TCGTCACTCGGGTCGTAATAC	0.478													25	66					0	0	0.000878237	0	0
LOC96610	96610	broad.mit.edu	37	22	22663086	22663087	+	RNA	DNP	TA	GG	GG	rs1054157	by1000genomes	TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr22:22663086_22663087TA>GG	uc011aim.1	+	29		c.1859_1860TA>GG			LOC96610_uc011aiq.1_RNA|LOC96610_uc011aip.1_RNA|LOC96610_uc010gto.2_RNA					Parts of antibodies, mostly variable regions.												0						AGCTGCCACATAAGTTGTCCTT	0.302													5	34					0	0	6.4e-05	0	0
GSTT1	2952	broad.mit.edu	37	22	24376964	24376964	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr22:24376964G>A	uc002zze.3	-	4	439	c.386C>T	c.(385-387)TCT>TTT	p.S129F	GSTT1_uc002zzf.3_RNA|GSTT1_uc010gug.2_RNA|GSTT1_uc011ajl.1_Missense_Mutation_p.S11F|GSTT1_uc010guh.2_Intron	NM_000853	NP_000844	P30711	GSTT1_HUMAN	glutathione S-transferase theta 1	129	GST C-terminal.				glutathione metabolic process	cytosol|soluble fraction	glutathione peroxidase activity|glutathione transferase activity			ovary(1)	1					Glutathione(DB00143)	TGTCTGGGGAGATACTGGCTC	0.507									Myelodysplasia_and_Acute_Myeloid_Leukemia_(AML)_Familial				22	61					0	0	0.00047179	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659578	24659578	+	RNA	SNP	A	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr22:24659578A>G	uc002zzs.3	+	7		c.3310A>G			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						TGCGCAGGCCAACACTCACTG	0.617													4	19					0	0	0.00024832	0	0
SGSM1	129049	broad.mit.edu	37	22	25301148	25301148	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr22:25301148G>A	uc003abg.2	+	22	3134	c.2977G>A	c.(2977-2979)GAT>AAT	p.D993N	SGSM1_uc003abh.2_Missense_Mutation_p.D932N|SGSM1_uc010guu.1_Missense_Mutation_p.D938N|SGSM1_uc003abj.2_Missense_Mutation_p.D877N|SGSM1_uc003abi.1_Missense_Mutation_p.D913N	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	993	Rab-GAP TBC.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						GGTCATTCTGGATGATGGTGA	0.498													36	94					0	0	0.00170553	0	0
LRP5L	91355	broad.mit.edu	37	22	25753278	25753279	+	Silent	DNP	GG	AA	AA			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr22:25753278_25753279GG>AA	uc003abs.2	-	2	2846_2847	c.381_382CC>TT	c.(379-384)GCCCTG>GCTTTG	p.127_128AL>AL	LRP5L_uc011ajz.1_Silent_p.127_128AL>AL|LRP5L_uc010guw.1_Silent_p.127_128AL>AL	NM_182492	NP_872298	A4QPB2	LRP5L_HUMAN	low density lipoprotein receptor-related protein	127_128	LDL-receptor class B 3.										0						TGCAGGTCCAGGGCCAGGCCGT	0.609													20	17					0	0	6.4e-05	0	0
THOC5	8563	broad.mit.edu	37	22	29921856	29921856	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr22:29921856G>A	uc003afr.2	-	13	1481	c.1146C>T	c.(1144-1146)GCC>GCT	p.A382A	THOC5_uc003afq.2_Silent_p.A43A|THOC5_uc003afs.2_Silent_p.A382A|THOC5_uc003aft.2_Silent_p.A382A|THOC5_uc003afu.2_Silent_p.A382A|THOC5_uc010gvo.2_Silent_p.A126A	NM_001002878	NP_001002878	Q13769	THOC5_HUMAN	THO complex 5	382					intronless viral mRNA export from host nucleus|monocyte differentiation|mRNA processing|primitive hemopoiesis|RNA splicing	cytoplasm|intermediate filament cytoskeleton|THO complex part of transcription export complex	protein binding|RNA binding			breast(3)	3						TCAGCTCCATGGCAGTTGTCA	0.532													39	28					0	0	0.000781405	0	0
RFPL2	10739	broad.mit.edu	37	22	32587083	32587084	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr22:32587083_32587084GG>AA	uc003amg.3	-	5	1748_1749	c.812_813CC>TT	c.(811-813)ACC>ATT	p.T271I	RFPL2_uc003ame.3_Missense_Mutation_p.T210I|RFPL2_uc003amf.3_Missense_Mutation_p.T181I|RFPL2_uc003amh.3_Missense_Mutation_p.T181I	NM_001098527	NP_001091997	O75678	RFPL2_HUMAN	ret finger protein-like 2 isoform 2	271	B30.2/SPRY.						zinc ion binding			skin(1)	1						CAAGCTCTGTGGTCAGCTGGAT	0.584													34	17					0	0	6.4e-05	0	0
APOL3	80833	broad.mit.edu	37	22	36538042	36538042	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr22:36538042C>T	uc003aot.2	-	3	453	c.415G>A	c.(415-417)GAA>AAA	p.E139K	APOL3_uc003aoq.2_Missense_Mutation_p.E68K|APOL3_uc003aor.2_Missense_Mutation_p.E68K|APOL3_uc003aos.2_Missense_Mutation_p.E68K|APOL3_uc003aou.2_5'UTR|APOL3_uc003aov.2_5'UTR	NM_145640	NP_663615	O95236	APOL3_HUMAN	apolipoprotein L3 isoform 1	139					inflammatory response|lipoprotein metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|extracellular region	lipid binding|lipid transporter activity|signal transducer activity				0						TGCACATATTCGTCCTCAATA	0.428													43	22					0	0	0.000680045	0	0
KCNJ4	3761	broad.mit.edu	37	22	38822972	38822972	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr22:38822972T>G	uc003avs.1	-	2	1263	c.1166A>C	c.(1165-1167)GAG>GCG	p.E389A	KCNJ4_uc003avt.1_Missense_Mutation_p.E389A	NM_004981	NP_004972	P48050	IRK4_HUMAN	potassium inwardly-rectifying channel J4	389	Poly-Glu.|Cytoplasmic (By similarity).				synaptic transmission	basolateral plasma membrane|voltage-gated potassium channel complex	inward rectifier potassium channel activity|PDZ domain binding				0	Melanoma(58;0.0286)					AGCTGCCTCCTCCTCCATCTC	0.682													29	71					0	0	0.0024448	0	0
RRP7B	91695	broad.mit.edu	37	22	42970745	42970745	+	RNA	SNP	G	A	A	rs137060	by1000genomes	TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr22:42970745G>A	uc003bcs.2	-	7		c.837C>T			RRP7B_uc003bct.2_RNA					Homo sapiens cDNA FLJ90011 fis, clone HEMBA1000443, highly similar to Gastric cancer antigen Zg14.												0						CGGCTCAGTAGGGTCGGAATT	0.642													4	14					0	0	0.00024832	0	0
EFCAB6	64800	broad.mit.edu	37	22	43950763	43950764	+	Silent	DNP	GG	AA	AA			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr22:43950763_43950764GG>AA	uc003bdy.1	-	27	3848_3849	c.3633_3634CC>TT	c.(3631-3636)ATCCTG>ATTTTG	p.1211_1212IL>IL	EFCAB6_uc003bdz.1_Silent_p.1059_1060IL>IL|EFCAB6_uc010gzi.1_Silent_p.1059_1060IL>IL|EFCAB6_uc010gzj.1_Silent_p.437_438IL>IL	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1211_1212	EF-hand 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				TCGTCCGTCAGGATTTGGACGC	0.52													22	72					0	0	6.4e-05	0	0
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45122507	45122507	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr22:45122507C>T	uc003bfd.2	+	4	587	c.315C>T	c.(313-315)TTC>TTT	p.F105F	PRR5_uc003bew.1_Silent_p.F96F|PRR5_uc003bex.1_Silent_p.F10F|PRR5_uc010gzt.1_Silent_p.F128F|PRR5_uc010gzu.1_Silent_p.F69F|PRR5_uc003bey.1_Silent_p.F96F|PRR5_uc003bez.1_Silent_p.F10F|PRR5-ARHGAP8_uc003bfc.2_Silent_p.F105F|PRR5-ARHGAP8_uc011aqi.1_Silent_p.F96F|PRR5-ARHGAP8_uc011aqj.1_Silent_p.F10F|PRR5_uc003bfa.1_5'UTR|PRR5_uc003bfb.1_Silent_p.F105F|PRR5_uc003bfe.1_RNA|PRR5-ARHGAP8_uc003bfg.1_Silent_p.F10F	NM_181335	NP_851852			Rho GTPase activating protein 8 isoform 2											skin(2)	2						AGATTCGCTTCTATGAGGGTG	0.637													13	11					0	0	0.000308642	0	0
GRM7	2917	broad.mit.edu	37	3	7620516	7620516	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:7620516C>T	uc003bqm.2	+	8	2197	c.1923C>T	c.(1921-1923)ATC>ATT	p.I641I	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.I641I|GRM7_uc003bql.2_Silent_p.I641I|GRM7_uc003bqn.1_Silent_p.I224I|GRM7_uc010hch.1_Silent_p.I152I	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	641	Helical; Name=2; (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	TTTGCTACATCATCACTTTCC	0.498													25	52					0	0	0.00209593	0	0
CPNE9	151835	broad.mit.edu	37	3	9760195	9760195	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:9760195G>A	uc003bsd.2	+	16	1321	c.1150G>A	c.(1150-1152)GAG>AAG	p.E384K		NM_153635	NP_705899	Q8IYJ1	CPNE9_HUMAN	copine-like protein	384	VWFA.									ovary(2)	2	Medulloblastoma(99;0.227)					TGCGGGCATCGAGGGTGTGCT	0.552													29	23					0	0	0.001512	0	0
RAF1	5894	broad.mit.edu	37	3	12632392	12632392	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:12632392C>T	uc003bxf.3	-	12	1690	c.1275G>A	c.(1273-1275)GAG>GAA	p.E425E	RAF1_uc011aut.1_Silent_p.E210E|RAF1_uc011auu.1_Silent_p.E343E	NM_002880	NP_002871	P04049	RAF1_HUMAN	v-raf-1 murine leukemia viral oncogene homolog	425	Protein kinase.				activation of MAPKK activity|apoptosis|axon guidance|cell proliferation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of apoptosis|negative regulation of cell proliferation|negative regulation of protein complex assembly|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of peptidyl-serine phosphorylation|Ras protein signal transduction|synaptic transmission	cytosol|mitochondrial outer membrane|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity		ESRP1/RAF1(4)|SRGAP3/RAF1(4)	central_nervous_system(4)|prostate(4)|lung(2)|upper_aerodigestive_tract(1)|stomach(1)|liver(1)|ovary(1)	14					Sorafenib(DB00398)	GGCTGCTGCCCTCGCACCACT	0.473			T	SRGAP3	pilocytic astrocytoma				Noonan_syndrome				17	65					0	0	0.00121646	0	0
ZNF385D	79750	broad.mit.edu	37	3	21467001	21467001	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:21467001C>T	uc003cce.2	-	6	1243	c.835G>A	c.(835-837)GAA>AAA	p.E279K		NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	279	Matrin-type 3.					nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						AGTTGCGTTTCCGAGTTGACG	0.413													34	31					0	0	0.00170553	0	0
CNOT10	25904	broad.mit.edu	37	3	32811394	32811394	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:32811394C>T	uc003cfc.1	+	18	2275	c.2020C>T	c.(2020-2022)CAT>TAT	p.H674Y	CNOT10_uc003cfd.1_Missense_Mutation_p.H673Y|CNOT10_uc003cfe.1_Missense_Mutation_p.H647Y|CNOT10_uc010hfv.1_Intron|CNOT10_uc011axj.1_Missense_Mutation_p.H734Y|CNOT10_uc010hfw.1_Missense_Mutation_p.H369Y	NM_015442	NP_056257	Q9H9A5	CNOTA_HUMAN	CCR4-NOT transcription complex, subunit 10	674					nuclear-transcribed mRNA poly(A) tail shortening	cytosol	protein binding			central_nervous_system(1)|skin(1)	2						TTCAATGATCCATCCTAAAGA	0.448													54	47					0	0	0.000781405	0	0
DLEC1	9940	broad.mit.edu	37	3	38135151	38135151	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:38135151G>A	uc003cho.1	+	12	1833	c.1812G>A	c.(1810-1812)CAG>CAA	p.Q604Q	DLEC1_uc003chp.1_Silent_p.Q604Q|DLEC1_uc010hgv.1_Silent_p.Q604Q|DLEC1_uc003chr.1_5'UTR|DLEC1_uc010hgx.1_5'Flank|DLEC1_uc003chq.1_RNA	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	604					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		AAAAAAGCCAGCCAGACCCTG	0.473													50	34					0	0	0.000781405	0	0
SCN5A	6331	broad.mit.edu	37	3	38645454	38645454	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:38645454C>T	uc003cio.2	-	12	1833	c.1639G>A	c.(1639-1641)GAA>AAA	p.E547K	SCN5A_uc003cin.2_Missense_Mutation_p.E547K|SCN5A_uc003cil.3_Missense_Mutation_p.E547K|SCN5A_uc010hhi.2_Missense_Mutation_p.E547K|SCN5A_uc010hhk.2_Missense_Mutation_p.E547K|SCN5A_uc011ayr.1_Missense_Mutation_p.E547K|SCN5A_uc010hhj.1_Missense_Mutation_p.E158K	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	547					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GTGCTGTTTTCATCATCTGCA	0.612													20	11					0	0	0.00152264	0	0
SCN11A	11280	broad.mit.edu	37	3	38936362	38936362	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:38936362G>A	uc011ays.1	-	15	2696	c.2497C>T	c.(2497-2499)CAG>TAG	p.Q833*	SCN11A_uc010hhn.1_5'UTR	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	833					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	AGTGCTAACTGGACTTTAGTT	0.453													17	32					0	0	0.000422831	0	0
ZNF35	7584	broad.mit.edu	37	3	44700466	44700466	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:44700466G>A	uc003cnq.2	+	4	832	c.611G>A	c.(610-612)AGC>AAC	p.S204N	ZNF35_uc003cnr.2_Missense_Mutation_p.S44N	NM_003420	NP_003411	P13682	ZNF35_HUMAN	zinc finger protein 35	204	Globular domain.				cellular response to retinoic acid|spermatogenesis	nucleus|perinuclear region of cytoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(412;0.0228)		OV - Ovarian serous cystadenocarcinoma(275;2.49e-27)|KIRC - Kidney renal clear cell carcinoma(197;0.0475)|Kidney(197;0.0595)		GGAAAATATAGCCTTAATTCT	0.393													74	50					0	0	0.000781405	0	0
PLXNB1	5364	broad.mit.edu	37	3	48448229	48448230	+	Splice_Site	DNP	CC	TT	TT			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:48448229_48448230CC>TT	uc003csw.2	-	36	6498	c.6228_splice	c.e36+1	p.W2076_splice	PLXNB1_uc003cst.2_Splice_Site_p.W526_splice|PLXNB1_uc003csu.2_Splice_Site_p.W1893_splice|PLXNB1_uc003csx.2_Splice_Site_p.W2076_splice	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor						axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GGAGGCCTTACCCAGGACAGTT	0.594													10	3					0	0	6.4e-05	0	0
COL7A1	1294	broad.mit.edu	37	3	48626333	48626333	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:48626333C>T	uc003ctz.2	-	18	2411	c.2410G>A	c.(2410-2412)GCT>ACT	p.A804T		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	804	Nonhelical region (NC1).|Fibronectin type-III 7.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		AGTCTGTAAGCTGTGGCTCCA	0.622													37	14					0	0	0.000692331	0	0
MST1R	4486	broad.mit.edu	37	3	49924951	49924951	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:49924951C>T	uc003cxy.3	-	20	4256	c.3992G>A	c.(3991-3993)CGA>CAA	p.R1331Q	MST1R_uc011bdc.1_Missense_Mutation_p.R210Q	NM_002447	NP_002438	Q04912	RON_HUMAN	macrophage stimulating 1 receptor precursor	1331	Cytoplasmic (Potential).|Protein kinase.				cellular component movement|defense response|multicellular organismal development|positive regulation of cell proliferation|single fertilization|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|macrophage colony-stimulating factor receptor activity|protein binding			ovary(5)|lung(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.65e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00553)|Kidney(197;0.00625)		GAAGGTGGGTCGCACTGCTGG	0.557													18	48					0	0	0.00074312	0	0
DOCK3	1795	broad.mit.edu	37	3	51370636	51370636	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:51370636C>T	uc011bds.1	+	35	3586	c.3563C>T	c.(3562-3564)TCC>TTC	p.S1188F		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1188	DHR-2.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		ACCGGCATTTCCTTTGTGACC	0.532													52	39					0	0	0.000781405	0	0
LRIG1	26018	broad.mit.edu	37	3	66430815	66430815	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:66430815C>A	uc003dmx.2	-	19	3168	c.3154G>T	c.(3154-3156)GCC>TCC	p.A1052S	SLC25A26_uc011bft.1_RNA|LRIG1_uc011bfu.1_Missense_Mutation_p.A672S|LRIG1_uc003dmw.2_Missense_Mutation_p.A718S|LRIG1_uc010hnz.2_Missense_Mutation_p.A768S|LRIG1_uc010hoa.2_Missense_Mutation_p.A1029S	NM_015541	NP_056356	Q96JA1	LRIG1_HUMAN	leucine-rich repeats and immunoglobulin-like	1052	Cytoplasmic (Potential).					integral to membrane				skin(3)|ovary(2)	5		Lung NSC(201;0.0101)		BRCA - Breast invasive adenocarcinoma(55;0.00047)		AAGTACTGGGCTTCCGCGCGC	0.567													43	49					2.24893e-16	1.2349e-15	0.00222228	1	0
RYBP	23429	broad.mit.edu	37	3	72495776	72495776	+	Splice_Site	SNP	C	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:72495776C>A	uc003dpe.2	-	1	118	c.1_splice	c.e1-1	p.R1_splice		NM_012234	NP_036366	Q8N488	RYBP_HUMAN	RING1 and YY1 binding protein						apoptosis|histone H2A monoubiquitination|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleoplasm	DNA binding|protein binding|transcription corepressor activity|zinc ion binding				0		Prostate(10;0.00174)|Lung NSC(201;0.0659)|Myeloproliferative disorder(1037;0.204)		BRCA - Breast invasive adenocarcinoma(55;0.000197)|Epithelial(33;0.00068)|LUSC - Lung squamous cell carcinoma(21;0.00228)|Lung(16;0.00677)|KIRC - Kidney renal clear cell carcinoma(39;0.198)|Kidney(39;0.232)		TTTTGGCCTTCCGAGGAGTGG	0.542													4	32					2.56e-06	1.38836e-05	0.00024832	1	0
EPHA6	285220	broad.mit.edu	37	3	97439161	97439161	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:97439161C>T	uc010how.1	+	15	2884	c.2841C>T	c.(2839-2841)TTC>TTT	p.F947F	EPHA6_uc003drt.2_Silent_p.F339F|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	852	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						ACAGAAAATTCTCCTCAGCAA	0.458													31	28					0	0	0.00209593	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125824752	125824752	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:125824752G>A	uc003eim.1	-	22	2660	c.2470C>T	c.(2470-2472)CTG>TTG	p.L824L	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Silent_p.L723L|ALDH1L1_uc003ein.1_Silent_p.L359L	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	824	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	GCCCGAGACAGCACGGCATCC	0.607													20	14					0	0	0.00152264	0	0
UROC1	131669	broad.mit.edu	37	3	126220114	126220114	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:126220114C>T	uc003eiz.1	-	10	944	c.912G>A	c.(910-912)AGG>AGA	p.R304R	UROC1_uc010hsi.1_Silent_p.R364R	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	304					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		CCTTTTTTTTCCTTGCTTCCC	0.582													19	16					0	0	0.000375601	0	0
MBNL1	4154	broad.mit.edu	37	3	152174058	152174058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:152174058C>T	uc003ezm.2	+	7	1807	c.1018C>T	c.(1018-1020)CCC>TCC	p.P340S	MBNL1_uc003ezh.2_Missense_Mutation_p.P334S|MBNL1_uc003ezi.2_Missense_Mutation_p.P322S|MBNL1_uc003ezj.2_Missense_Mutation_p.P295S|MBNL1_uc003ezl.2_Intron|MBNL1_uc003ezp.2_Silent_p.F270F|MBNL1_uc003ezn.2_Missense_Mutation_p.P266S|MBNL1_uc003ezo.2_Missense_Mutation_p.P254S|MBNL1_uc010hvp.2_Intron	NM_207293	NP_997176	Q9NR56	MBNL1_HUMAN	muscleblind-like 1 isoform c	340					embryonic limb morphogenesis|in utero embryonic development|myoblast differentiation|nervous system development	nucleus|stress granule	double-stranded RNA binding|protein binding|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			TCCGAAAGTTCCCATGGTGCA	0.483													36	10					0	0	0.000814825	0	0
GOLIM4	27333	broad.mit.edu	37	3	167745580	167745580	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:167745580G>A	uc003ffe.2	-	12	1903	c.1559C>T	c.(1558-1560)CCA>CTA	p.P520L	GOLIM4_uc011bpe.1_Missense_Mutation_p.P521L|GOLIM4_uc011bpf.1_Missense_Mutation_p.P493L|GOLIM4_uc011bpg.1_Missense_Mutation_p.P492L	NM_014498	NP_055313	O00461	GOLI4_HUMAN	golgi integral membrane protein 4	520	Glu-rich.|Lumenal (Potential).				transport	cis-Golgi network|endocytic vesicle|endosome membrane|Golgi cisterna membrane|Golgi lumen|integral to membrane|nucleus				breast(4)|skin(1)	5						TCTATTACCTGGATCTCCTTC	0.458													38	115					0	0	0.000781405	0	0
SAMD7	344658	broad.mit.edu	37	3	169637367	169637367	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:169637367G>A	uc003fgd.2	+	3	348	c.81G>A	c.(79-81)GTG>GTA	p.V27V	SAMD7_uc003fge.2_Silent_p.V27V|SAMD7_uc011bpo.1_5'UTR	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	27										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			CTCCAACTGTGGACAGGTATT	0.413													34	34					0	0	0.000953801	0	0
SAMD7	344658	broad.mit.edu	37	3	169656259	169656259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:169656259C>T	uc003fgd.2	+	9	1573	c.1306C>T	c.(1306-1308)CCT>TCT	p.P436S	SAMD7_uc003fge.2_Missense_Mutation_p.P436S|SAMD7_uc011bpo.1_Missense_Mutation_p.P337S	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	436										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			TACAATAATTCCTAAAGGAAT	0.398													6	16					0	0	0.00116845	0	0
ZMAT3	64393	broad.mit.edu	37	3	178742978	178742978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:178742978G>A	uc003fjg.2	-	6	956	c.697C>T	c.(697-699)CCA>TCA	p.P233S	ZMAT3_uc010hxa.2_Missense_Mutation_p.P232S|ZMAT3_uc003fji.2_Missense_Mutation_p.P232S	NM_022470	NP_071915	Q9HA38	ZMAT3_HUMAN	p53 target zinc finger protein isoform 1	233					apoptosis|protein transport|regulation of growth|response to DNA damage stimulus|transmembrane transport	nucleolus	RNA binding|zinc ion binding			ovary(2)	2	all_cancers(143;3.31e-18)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;6.74e-27)|GBM - Glioblastoma multiforme(14;0.00448)|BRCA - Breast invasive adenocarcinoma(182;0.0527)			AGATCACGTGGAATTCTCTGC	0.423													29	9					0	0	0.00106085	0	0
MCF2L2	23101	broad.mit.edu	37	3	183014915	183014915	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:183014915G>A	uc003fli.1	-	12	1436	c.1346C>T	c.(1345-1347)TCC>TTC	p.S449F	MCF2L2_uc003flj.1_Missense_Mutation_p.S449F|MCF2L2_uc011bqr.1_Intron|uc003fln.1_RNA|uc003flo.2_5'Flank	NM_015078	NP_055893	Q86YR7	MF2L2_HUMAN	Rho family guanine-nucleotide exchange factor	449					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)|large_intestine(2)|breast(1)	5	all_cancers(143;1.26e-12)|Ovarian(172;0.0355)		all cancers(12;3.35e-44)|Epithelial(37;6.48e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			TACAGCTTGGGAAGCCAAGAG	0.532													23	26					0	0	0.00106085	0	0
EIF4G1	1981	broad.mit.edu	37	3	184035254	184035255	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:184035254_184035255CC>TT	uc003fnp.2	+	5	491_492	c.293_294CC>TT	c.(292-294)GCC>GTT	p.A98V	EIF4G1_uc003fno.1_Intron|EIF4G1_uc010hxw.1_Intron|EIF4G1_uc003fnt.2_Intron|EIF4G1_uc003fnq.2_Missense_Mutation_p.A11V|EIF4G1_uc003fnr.2_Intron|EIF4G1_uc010hxx.2_Missense_Mutation_p.A105V|EIF4G1_uc003fns.2_Missense_Mutation_p.A58V|EIF4G1_uc010hxy.2_Missense_Mutation_p.A105V|EIF4G1_uc010hxz.1_Missense_Mutation_p.A11V|EIF4G1_uc003fnv.3_Missense_Mutation_p.A98V|EIF4G1_uc003fnu.3_Missense_Mutation_p.A98V|EIF4G1_uc003fnw.2_Missense_Mutation_p.A105V	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	98					insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			TCCTACCCAGCCTCCCAGGGGG	0.614													29	29					0	0	6.4e-05	0	0
HTT	3064	broad.mit.edu	37	4	3129048	3129048	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr4:3129048C>T	uc011bvq.1	+	13	1611	c.1466C>T	c.(1465-1467)CCA>CTA	p.P489L		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	487					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		GTTTCCACTCCAGGGTCAGCA	0.522													9	13					0	0	0.000274275	0	0
EVC2	132884	broad.mit.edu	37	4	5690978	5690978	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr4:5690978G>A	uc003gij.2	-	5	666	c.612C>T	c.(610-612)CTC>CTT	p.L204L	EVC2_uc011bwb.1_5'UTR|EVC2_uc003gik.2_Silent_p.L124L	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	204						integral to membrane				large_intestine(3)|ovary(2)	5						TGTCCAGCAAGAGCAGCTCCG	0.527													36	30					0	0	0.000491102	0	0
MAN2B2	23324	broad.mit.edu	37	4	6588780	6588780	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr4:6588780T>A	uc003gjf.1	+	4	485	c.449T>A	c.(448-450)GTT>GAT	p.V150D	MAN2B2_uc003gje.1_Missense_Mutation_p.V150D|MAN2B2_uc011bwf.1_Missense_Mutation_p.V150D	NM_015274	NP_056089	Q9Y2E5	MA2B2_HUMAN	mannosidase, alpha, class 2B, member 2	150					mannose metabolic process	extracellular region	alpha-mannosidase activity|carbohydrate binding|zinc ion binding			ovary(2)	2						TCCTGGCACGTTGACCCGTTT	0.622													12	22					0	0	0.000219431	0	0
TBC1D19	55296	broad.mit.edu	37	4	26744181	26744181	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr4:26744181C>T	uc003gsf.3	+	18	1549	c.1279C>T	c.(1279-1281)CCC>TCC	p.P427S	TBC1D19_uc010iew.2_Missense_Mutation_p.P427S|TBC1D19_uc011bxu.1_Missense_Mutation_p.P362S	NM_018317	NP_060787	Q8N5T2	TBC19_HUMAN	TBC1 domain family, member 19	427	Rab-GAP TBC.					intracellular	Rab GTPase activator activity			breast(1)	1		Breast(46;0.0503)				AACTTATCTTCCCCAACTCTT	0.333													31	70					0	0	0.00058488	0	0
STIM2	57620	broad.mit.edu	37	4	27010621	27010621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr4:27010621C>T	uc003gsh.3	+	11	1987	c.1771C>T	c.(1771-1773)CCC>TCC	p.P591S	STIM2_uc003gsg.3_Missense_Mutation_p.P583S|STIM2_uc010iex.2_Missense_Mutation_p.P583S|STIM2_uc010iey.2_Missense_Mutation_p.P207S	NM_020860	NP_065911	Q9P246	STIM2_HUMAN	stromal interaction molecule 2	496	Cytoplasmic (Potential).				activation of store-operated calcium channel activity|calcium ion transport|cellular calcium ion homeostasis|negative regulation of calcium ion transport via store-operated calcium channel activity	endoplasmic reticulum membrane|integral to membrane|plasma membrane	calcium channel regulator activity|calcium ion binding|protein binding			central_nervous_system(1)|skin(1)	2		Breast(46;0.0503)				GTCACAATTTCCCGGTAAGTG	0.418													12	19					0	0	0.00185496	0	0
SRD5A3	79644	broad.mit.edu	37	4	56225634	56225634	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr4:56225634C>T	uc003hau.2	+	2	438	c.343C>T	c.(343-345)CTC>TTC	p.L115F		NM_024592	NP_078868	Q9H8P0	PORED_HUMAN	steroid 5 alpha-reductase 3	115	Cytoplasmic (Potential).				androgen biosynthetic process|dolichol metabolic process|dolichol-linked oligosaccharide biosynthetic process|polyprenol catabolic process	endoplasmic reticulum membrane|integral to membrane	3-oxo-5-alpha-steroid 4-dehydrogenase activity|oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor				0	all_cancers(7;0.0308)|all_lung(4;0.00195)|Lung NSC(11;0.00431)|all_epithelial(27;0.0425)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.0179)			GCTCAGAATTCTCGGGGCGGC	0.522													27	29					0	0	0.00127121	0	0
EPHA5	2044	broad.mit.edu	37	4	66467820	66467820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr4:66467820G>A	uc003hcy.2	-	3	642	c.449C>T	c.(448-450)ACC>ATC	p.T150I	EPHA5_uc003hcx.2_Missense_Mutation_p.T81I|EPHA5_uc003hcz.2_Missense_Mutation_p.T150I|EPHA5_uc011cah.1_Missense_Mutation_p.T150I|EPHA5_uc011cai.1_Missense_Mutation_p.T150I|EPHA5_uc003hda.2_Missense_Mutation_p.T150I	NM_004439	NP_004430	P54756	EPHA5_HUMAN	ephrin receptor EphA5 isoform a precursor	150	Extracellular (Potential).				cAMP-mediated signaling|neuron development	dendrite|external side of plasma membrane|integral to plasma membrane|neuronal cell body|perinuclear region of cytoplasm|rough endoplasmic reticulum	ATP binding|transmembrane-ephrin receptor activity			lung(19)|stomach(2)|ovary(2)|central_nervous_system(1)	24						CATATTAAAGGTTTCCTTACA	0.418										TSP Lung(17;0.13)			14	18					0	0	0.000219431	0	0
UGT2B10	7365	broad.mit.edu	37	4	69682355	69682355	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr4:69682355C>T	uc003hee.2	+	1	643	c.618C>T	c.(616-618)TTC>TTT	p.F206F	UGT2B10_uc011cam.1_Intron	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	206					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						AAATGACTTTCATGGAGAGGG	0.353													6	19					0	0	0.000157383	0	0
UGT2B28	54490	broad.mit.edu	37	4	70146802	70146802	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr4:70146802C>T	uc003hej.2	+	1	586	c.584C>T	c.(583-585)CCT>CTT	p.P195L	UGT2B28_uc010ihr.2_Missense_Mutation_p.P195L	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	195					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	TCCTACATACCTGTTGTTATG	0.393													8	15					0	0	0.000157383	0	0
ANKRD17	26057	broad.mit.edu	37	4	73968111	73968111	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr4:73968111C>T	uc003hgp.2	-	25	4672	c.4555G>A	c.(4555-4557)GAA>AAA	p.E1519K	ANKRD17_uc003hgo.2_Missense_Mutation_p.E1406K|ANKRD17_uc003hgq.2_Missense_Mutation_p.E1268K|ANKRD17_uc003hgr.2_Missense_Mutation_p.E1518K	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	1519	Potential.				interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TTAAGCTTTTCTTTTTCTTGA	0.234													21	32					0	0	0.00047179	0	0
AFF1	4299	broad.mit.edu	37	4	88035744	88035744	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr4:88035744C>T	uc003hqj.3	+	11	2145	c.1738C>T	c.(1738-1740)CCC>TCC	p.P580S	AFF1_uc011ccz.1_Missense_Mutation_p.P587S|AFF1_uc003hqk.3_Missense_Mutation_p.P580S|AFF1_uc011cda.1_Missense_Mutation_p.P218S	NM_005935	NP_005926	P51825	AFF1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	580						nucleus	sequence-specific DNA binding transcription factor activity			breast(1)	1		Acute lymphoblastic leukemia(40;0.0935)|all_hematologic(202;0.111)|Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000233)		AGCCCCCCACCCCGGAAAGAG	0.597													11	5					0	0	0.00185496	0	0
UBE2D3	7323	broad.mit.edu	37	4	103723774	103723774	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr4:103723774C>G	uc003hwk.2	-	5	603	c.142G>C	c.(142-144)GGT>CGT	p.G48R	UBE2D3_uc003hwi.2_Missense_Mutation_p.G48R|UBE2D3_uc003hwj.2_RNA|UBE2D3_uc003hwl.2_Missense_Mutation_p.G48R|UBE2D3_uc011cet.1_Missense_Mutation_p.G48R|UBE2D3_uc011ceu.1_Missense_Mutation_p.G48R|UBE2D3_uc003hwo.2_Missense_Mutation_p.G48R|UBE2D3_uc003hwp.2_Missense_Mutation_p.G48R|UBE2D3_uc003hwq.2_Missense_Mutation_p.G50R|UBE2D3_uc003hwr.2_Missense_Mutation_p.G48R	NM_181887	NP_871616	P61077	UB2D3_HUMAN	ubiquitin-conjugating enzyme E2D 3 isoform 1	48					apoptosis|BMP signaling pathway|DNA repair|negative regulation of type I interferon production|proteasomal ubiquitin-dependent protein catabolic process|protein K11-linked ubiquitination|protein K48-linked ubiquitination|protein monoubiquitination|transforming growth factor beta receptor signaling pathway	endosome membrane|plasma membrane	ATP binding|protein binding|ubiquitin-protein ligase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.13e-08)		AAGAATACACCGCCTTGATAT	0.318													3	47					0	0	0.00024832	0	0
ANK2	287	broad.mit.edu	37	4	114279687	114279687	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr4:114279687C>T	uc003ibe.3	+	38	10013	c.9913C>T	c.(9913-9915)CCT>TCT	p.P3305S	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Missense_Mutation_p.P607S|ANK2_uc011cgb.1_Missense_Mutation_p.P3320S	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	3272					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		ATCCAAAATTCCTGTAAGGAC	0.428													17	16					0	0	0.000422831	0	0
SYNPO2	171024	broad.mit.edu	37	4	119948321	119948321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr4:119948321G>A	uc003icm.3	+	3	993	c.797G>A	c.(796-798)AGA>AAA	p.R266K	SYNPO2_uc010ina.2_Missense_Mutation_p.R266K|SYNPO2_uc010inb.2_Missense_Mutation_p.R266K|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.R194K	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	266				SSGR -> IRHE (in Ref. 5; CAB51856).		nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						TCCAGTGGCAGAGAGTTGAGA	0.512													6	14					0	0	0.000157383	0	0
KIAA1109	84162	broad.mit.edu	37	4	123230600	123230601	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr4:123230600_123230601GG>AA	uc003ieh.2	+	57	10278_10279	c.10233_10234GG>AA	c.(10231-10236)GGGGAT>GGAAAT	p.D3412N	KIAA1109_uc003iel.1_Missense_Mutation_p.D1347N	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	3412					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						AAATTCATGGGGATTTAGTGAT	0.337													11	22					0	0	6.4e-05	0	0
BBS12	166379	broad.mit.edu	37	4	123664480	123664480	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr4:123664480C>T	uc003ieu.2	+	2	1626	c.1433C>T	c.(1432-1434)CCT>CTT	p.P478L		NM_152618	NP_689831	Q6ZW61	BBS12_HUMAN	Bardet-Biedl syndrome 12	478					cellular protein metabolic process	cilium	ATP binding			ovary(2)	2						AGAAGCAGCCCTTTGGATGTT	0.473									Bardet-Biedl_syndrome				28	26					0	0	0.001512	0	0
C4orf33	132321	broad.mit.edu	37	4	130032905	130032906	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr4:130032905_130032906CC>TT	uc003igu.3	+	6	923_924	c.559_560CC>TT	c.(559-561)CCG>TTG	p.P187L	C4orf33_uc010iod.2_Missense_Mutation_p.P187L	NM_173487	NP_775758	Q8N1A6	CD033_HUMAN	hypothetical protein LOC132321	187										upper_aerodigestive_tract(1)	1						GTGGAAACAACCGGAATCAGAC	0.342													8	13					0	0	6.4e-05	0	0
FNIP2	57600	broad.mit.edu	37	4	159790132	159790132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr4:159790132C>T	uc003iqe.3	+	13	2527	c.2344C>T	c.(2344-2346)CGG>TGG	p.R782W		NM_020840	NP_065891	Q9P278	FNIP2_HUMAN	folliculin interacting protein 2	782	Interaction with PRKAA1.				DNA damage response, signal transduction resulting in induction of apoptosis|protein phosphorylation|regulation of protein phosphorylation	cytoplasm	protein binding				0	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.00936)		TCCTCAGAATCGGCTTTCAGA	0.547													22	30					0	0	0.00229938	0	0
FSTL5	56884	broad.mit.edu	37	4	162421234	162421234	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr4:162421234C>T	uc003iqh.2	-	12	1828	c.1392G>A	c.(1390-1392)GTG>GTA	p.V464V	FSTL5_uc003iqi.2_Silent_p.V463V|FSTL5_uc010iqv.2_Silent_p.V454V	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	464						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		TGGGTTGTATCACTTTGATTC	0.318													6	18					0	0	0.00116845	0	0
ASB5	140458	broad.mit.edu	37	4	177142371	177142371	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr4:177142371C>T	uc003iuq.1	-	5	621	c.605G>A	c.(604-606)GGA>GAA	p.G202E	ASB5_uc003iup.1_Missense_Mutation_p.G149E	NM_080874	NP_543150	Q8WWX0	ASB5_HUMAN	ankyrin repeat and SOCS box-containing protein	202	ANK 5.				intracellular signal transduction					skin(2)	2		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.13e-20)|Epithelial(43;9.94e-18)|OV - Ovarian serous cystadenocarcinoma(60;2e-09)|GBM - Glioblastoma multiforme(59;0.000254)|STAD - Stomach adenocarcinoma(60;0.000653)|LUSC - Lung squamous cell carcinoma(193;0.0393)		GAGAGGAGTTCCCAAATGAGG	0.403													23	27					0	0	0.000375601	0	0
MTNR1A	4543	broad.mit.edu	37	4	187455461	187455461	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr4:187455461G>A	uc003izd.1	-	2	453	c.435C>T	c.(433-435)CTC>CTT	p.L145L		NM_005958	NP_005949	P48039	MTR1A_HUMAN	melatonin receptor 1A	145	Helical; Name=4; (Potential).				circadian rhythm|G-protein signaling, coupled to cyclic nucleotide second messenger|mating behavior	integral to plasma membrane	melatonin receptor activity			ovary(1)|skin(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5		all_cancers(14;6.39e-56)|all_epithelial(14;1.48e-41)|all_lung(41;2.45e-15)|Lung NSC(41;7.26e-15)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00335)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|Renal(120;0.0183)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;7.63e-12)|BRCA - Breast invasive adenocarcinoma(30;6.68e-07)|GBM - Glioblastoma multiforme(59;3.44e-05)|LUSC - Lung squamous cell carcinoma(40;0.000106)|STAD - Stomach adenocarcinoma(60;0.000279)|READ - Rectum adenocarcinoma(43;0.159)	Melatonin(DB01065)|Ramelteon(DB00980)	GCACGTAGCAGAGGGAGTTCT	0.572													9	22					0	0	0.000274275	0	0
TUBB4Q	56604	broad.mit.edu	37	4	190903785	190903785	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr4:190903785C>T	uc011clg.1	-	4	1198	c.1195G>A	c.(1195-1197)GAG>AAG	p.E399K		NM_020040	NP_064424	Q99867	TBB4Q_HUMAN	tubulin, beta polypeptide 4, member Q	400					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;4.1e-31)|Epithelial(3;1.44e-30)|OV - Ovarian serous cystadenocarcinoma(60;2.03e-15)|BRCA - Breast invasive adenocarcinoma(30;8.54e-06)|Lung(3;3.23e-05)|STAD - Stomach adenocarcinoma(60;8.24e-05)|LUSC - Lung squamous cell carcinoma(40;0.000184)|GBM - Glioblastoma multiforme(59;0.00839)|READ - Rectum adenocarcinoma(43;0.155)		TCCATGCCCTCGCCCGTGTAC	0.557													34	45					0	0	0.000491102	0	0
PDZD2	23037	broad.mit.edu	37	5	31983460	31983460	+	Missense_Mutation	SNP	C	T	T	rs34239074	byFrequency	TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:31983460C>T	uc003jhl.2	+	3	1064	c.676C>T	c.(676-678)CCT>TCT	p.P226S	PDZD2_uc003jhm.2_Missense_Mutation_p.P226S|PDZD2_uc011cnx.1_Missense_Mutation_p.P52S	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	226					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CTCCAGGCCTCCTGCCAACAA	0.577													13	28					0	0	0.00185496	0	0
NUP155	9631	broad.mit.edu	37	5	37341336	37341336	+	Silent	SNP	A	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:37341336A>G	uc003jku.1	-	11	1220	c.1102T>C	c.(1102-1104)TTA>CTA	p.L368L	NUP155_uc003jkt.1_Silent_p.L309L|NUP155_uc010iuz.1_Silent_p.L368L	NM_153485	NP_705618	O75694	NU155_HUMAN	nucleoporin 155kDa isoform 1	368					carbohydrate metabolic process|glucose transport|mRNA transport|nucleocytoplasmic transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore|transporter activity			ovary(1)	1	all_lung(31;0.000137)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CTAAAATATAACCTAACACCT	0.413													9	7					0	0	0.000673444	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41048429	41048429	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:41048429C>T	uc003jmj.3	-	16	2171	c.1681G>A	c.(1681-1683)GAA>AAA	p.E561K	HEATR7B2_uc003jmi.3_Missense_Mutation_p.E116K	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	561	HEAT 6.						binding			ovary(6)|central_nervous_system(2)	8						CTTGTACCTTCCAGAGGCTGC	0.453													7	23					0	0	0.000274275	0	0
PARP8	79668	broad.mit.edu	37	5	50090740	50090740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:50090740C>T	uc003jon.3	+	13	1099	c.917C>T	c.(916-918)TCT>TTT	p.S306F	PARP8_uc011cpz.1_Missense_Mutation_p.S198F|PARP8_uc003joo.2_Missense_Mutation_p.S306F|PARP8_uc003jop.2_Missense_Mutation_p.S306F	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	306						intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				AAACTGAAATCTGAGCAGGAC	0.468													17	18					0	0	0.000958276	0	0
GZMK	3003	broad.mit.edu	37	5	54320538	54320538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:54320538C>T	uc003jpl.1	+	2	159	c.115C>T	c.(115-117)CCA>TCA	p.P39S		NM_002104	NP_002095	P49863	GRAK_HUMAN	granzyme K precursor	39	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.183)				TCATTCCAGGCCATTTATGGC	0.448													12	6					0	0	0.00185496	0	0
GPR98	84059	broad.mit.edu	37	5	89938839	89938839	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:89938839G>A	uc003kju.2	+	13	2630	c.2534G>A	c.(2533-2535)AGA>AAA	p.R845K	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	845	Extracellular (Potential).|Calx-beta 6.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTGCTAGCAAGATTGGATGGG	0.343													20	35					0	0	0.00188189	0	0
GPR98	84059	broad.mit.edu	37	5	90016856	90016856	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:90016856C>T	uc003kju.2	+	45	9824	c.9728C>T	c.(9727-9729)TCT>TTT	p.S3243F	GPR98_uc003kjt.2_Missense_Mutation_p.S949F|GPR98_uc003kjv.2_Missense_Mutation_p.S843F	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3243	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GAGACAGTATCTGAAACAGCC	0.353													27	35					0	0	0.00106085	0	0
CHD1	1105	broad.mit.edu	37	5	98194037	98194037	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:98194037G>A	uc003knf.2	-	34	4782	c.4634C>T	c.(4633-4635)TCC>TTC	p.S1545F	CHD1_uc010jbn.2_Missense_Mutation_p.S271F	NM_001270	NP_001261	O14646	CHD1_HUMAN	chromodomain helicase DNA binding protein 1	1545					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|methylated histone residue binding			lung(2)|ovary(1)|breast(1)|pancreas(1)	5		all_cancers(142;5.36e-08)|all_epithelial(76;6.97e-11)|Lung NSC(167;0.000693)|Prostate(80;0.000986)|all_lung(232;0.00119)|Ovarian(225;0.024)|Colorectal(57;0.117)		COAD - Colon adenocarcinoma(37;0.0717)	Epirubicin(DB00445)	TCTATCAGAGGAATAACTGTC	0.338													36	40					0	0	0.000781405	0	0
PRR16	51334	broad.mit.edu	37	5	120022371	120022371	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:120022371G>A	uc003ksq.2	+	2	1045	c.882G>A	c.(880-882)ACG>ACA	p.T294T	PRR16_uc003ksp.2_Silent_p.T271T|PRR16_uc003ksr.2_Silent_p.T224T	NM_016644	NP_057728	Q569H4	PRR16_HUMAN	proline rich 16	294										pancreas(2)|ovary(1)	3		all_cancers(142;0.0464)|Prostate(80;0.00446)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.000126)|Epithelial(69;0.000331)|all cancers(49;0.00169)		CACAGAAGACGATCTTGAGGA	0.383													10	11					0	0	0.00185496	0	0
SNCAIP	9627	broad.mit.edu	37	5	121739548	121739548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:121739548G>A	uc003ksw.1	+	3	324	c.118G>A	c.(118-120)GAA>AAA	p.E40K	SNCAIP_uc011cwl.1_5'UTR|SNCAIP_uc010jct.2_Missense_Mutation_p.E40K|SNCAIP_uc003ksx.1_Missense_Mutation_p.E87K|SNCAIP_uc003ksy.1_Silent_p.T24T|SNCAIP_uc003ksz.1_Silent_p.T24T|SNCAIP_uc010jcu.2_Silent_p.T24T|SNCAIP_uc011cwm.1_Silent_p.T24T|SNCAIP_uc003kta.1_Silent_p.T22T|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Silent_p.T24T|SNCAIP_uc010jcx.1_Missense_Mutation_p.E40K	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	40					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		TACGCAAAACGAAGACAGATC	0.478													18	21					0	0	0.00152264	0	0
IL3	3562	broad.mit.edu	37	5	131398406	131398406	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:131398406G>A	uc003kwe.1	+	5	434	c.381G>A	c.(379-381)CGG>CGA	p.R127R		NM_000588	NP_000579	P08700	IL3_HUMAN	interleukin 3 precursor	127					cell-cell signaling|immune response|nervous system development|positive regulation of cell proliferation|positive regulation of DNA replication|positive regulation of survival gene product expression|positive regulation of tyrosine phosphorylation of Stat5 protein	extracellular space	cytokine activity|growth factor activity|interleukin-3 receptor binding			ovary(2)|central_nervous_system(1)	3		all_cancers(142;7.42e-12)|Lung NSC(810;4.25e-07)|all_lung(232;1.93e-06)|Prostate(281;0.00741)|Breast(839;0.0544)|Lung SC(612;0.122)|Ovarian(839;0.223)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	GBM - Glioblastoma multiforme(465;0.0161)|Lung(113;0.105)	Amlexanox(DB01025)	ATGAATTCCGGAGGAAACTGA	0.368											OREG0016762	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	43	44					0	0	0.000509022	0	0
LOC153328	153328	broad.mit.edu	37	5	135207568	135207568	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:135207568C>T	uc003laz.1	+	5	1012	c.840C>T	c.(838-840)CTC>CTT	p.L280L	LOC153328_uc003lba.2_Intron			Q6ZT89	S2548_HUMAN	RecName: Full=Putative mitochondrial carrier protein FLJ44862;	Error:Variant_position_missing_in_Q6ZT89_after_alignment					transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CCGGCCCTCTCCCACCTCAGT	0.458													11	17					0	0	0.00136819	0	0
HARS	3035	broad.mit.edu	37	5	140056385	140056385	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:140056385C>T	uc003lgv.2	-	10	1130	c.1048G>A	c.(1048-1050)GAG>AAG	p.E350K	HARS_uc003lgu.2_Missense_Mutation_p.E281K|HARS_uc011czm.1_Missense_Mutation_p.E310K|HARS_uc003lgw.2_Missense_Mutation_p.E330K|HARS_uc011czn.1_Missense_Mutation_p.E290K|HARS_uc010jfu.2_Missense_Mutation_p.E350K|HARS_uc011czo.1_Missense_Mutation_p.E276K|HARS_uc011czp.1_Missense_Mutation_p.E236K|HARS_uc011czq.1_Missense_Mutation_p.E240K	NM_002109	NP_002100	P12081	SYHC_HUMAN	histidyl-tRNA synthetase	350					histidyl-tRNA aminoacylation	cytosol	ATP binding|histidine-tRNA ligase activity			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		L-Histidine(DB00117)	CCCAGGGGCTCTTCCCCTGCC	0.607													15	32					0	0	0.00074312	0	0
PCDHA2	56146	broad.mit.edu	37	5	140174643	140174643	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:140174643C>T	uc003lhd.2	+	1	200	c.94C>T	c.(94-96)CGC>TGC	p.R32C	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.R32C|PCDHA2_uc011czy.1_Missense_Mutation_p.R32C	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	32	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGGCCAGCTCCGCTACTCCGT	0.682													12	24					0	0	0.000978159	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475705	140475705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:140475705C>T	uc003lil.2	+	1	1469	c.1331C>T	c.(1330-1332)TCC>TTC	p.S444F	PCDHB2_uc003lim.1_Missense_Mutation_p.S105F	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	444	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTGCTGGTCTCCGACGTCAAT	0.607													26	46					0	0	0.00127121	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553523	140553523	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:140553523G>A	uc003lit.2	+	1	1281	c.1107G>A	c.(1105-1107)AGG>AGA	p.R369R		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	369	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTGTTTTTAGGATTAGAGACA	0.463													13	23					0	0	0.000219431	0	0
PCDHGB2	56103	broad.mit.edu	37	5	140741831	140741831	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:140741831C>A	uc003ljs.1	+	1	2129	c.2129C>A	c.(2128-2130)GCA>GAA	p.A710E	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGA5_uc003lju.1_5'Flank|PCDHGB2_uc011dar.1_Missense_Mutation_p.A710E|PCDHGA5_uc011das.1_5'Flank	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	710	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGATTCTGGCAATCTCCCTG	0.582													20	40					3.8784e-16	2.12586e-15	0.00188189	1	0
PCDHGC4	56098	broad.mit.edu	37	5	140866970	140866970	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:140866970C>A	uc003lky.1	+	1	2230	c.2230C>A	c.(2230-2232)CCC>ACC	p.P744T	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc011dbb.1_Missense_Mutation_p.P744T|PCDHGC5_uc011dbc.1_5'Flank|PCDHGC5_uc003lla.1_5'Flank	NM_018928	NP_061751	Q9Y5F7	PCDGL_HUMAN	protocadherin gamma subfamily C, 4 isoform 1	744	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAGGGGCTTCCCCCTTCCAA	0.557													14	24					1.5842e-08	8.60674e-08	0.00185496	1	0
SPINK5	11005	broad.mit.edu	37	5	147475428	147475428	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:147475428G>A	uc003lox.2	+	10	915	c.842G>A	c.(841-843)GGA>GAA	p.G281E	SPINK5_uc010jgq.1_RNA|SPINK5_uc010jgs.1_Missense_Mutation_p.G253E|SPINK5_uc010jgr.2_Missense_Mutation_p.G262E|SPINK5_uc003low.2_Missense_Mutation_p.G281E|SPINK5_uc003loy.2_Missense_Mutation_p.G281E	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	281	Kazal-like 4.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAAAATTTGGGAAAAGCTGAA	0.363													13	14					0	0	0.00074312	0	0
FAT2	2196	broad.mit.edu	37	5	150908755	150908755	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:150908755C>T	uc003lue.3	-	14	10023	c.10010G>A	c.(10009-10011)GGT>GAT	p.G3337D	GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Missense_Mutation_p.G30D	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	3337	Cadherin 30.|Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GATGACGTCACCCACAAGGGC	0.517													19	28					0	0	0.00152264	0	0
SLIT3	6586	broad.mit.edu	37	5	168233537	168233537	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:168233537G>A	uc003mab.2	-	9	1269	c.849C>T	c.(847-849)CCC>CCT	p.P283P	SLIT3_uc010jjg.2_Silent_p.P283P|SLIT3_uc010jji.2_Silent_p.P283P|SLIT3_uc003mac.1_Silent_p.P80P	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	283	LRRNT 2.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGCACGTGCAGGGCGAAGGGC	0.567													17	20					0	0	0.00121646	0	0
FOXI1	2299	broad.mit.edu	37	5	169535099	169535099	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:169535099C>T	uc003mai.3	+	2	666	c.621C>T	c.(619-621)TTC>TTT	p.F207F	FOXI1_uc003maj.3_Intron	NM_012188	NP_036320	Q12951	FOXI1_HUMAN	forkhead box I1 isoform a	207	Fork-head.				epidermal cell fate specification|otic placode formation|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0267)|all_lung(126;0.04)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGAAAATGTTCGACAATGGAA	0.468									Pendred_syndrome				22	21					0	0	0.000375601	0	0
SNCB	6620	broad.mit.edu	37	5	176053500	176053500	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:176053500C>T	uc003mep.2	-	5	624	c.181G>A	c.(181-183)GAA>AAA	p.E61K	SNCB_uc003meq.2_Missense_Mutation_p.E61K|SNCB_uc010jke.1_Silent_p.R128R	NM_001001502	NP_001001502	Q16143	SYUB_HUMAN	beta-synuclein	61	4.|4 X 11 AA tandem repeats of [EGS]-K-T-K- [EQ]-[GQ]-V-X(4).						calcium ion binding|phospholipase inhibitor activity			ovary(1)	1	all_cancers(89;0.00222)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.00498)|all_neural(177;0.0212)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GAGGCCTGTTCCTTGGTTTTT	0.582													12	7					0	0	0.00136819	0	0
UNC5A	90249	broad.mit.edu	37	5	176301449	176301449	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:176301449G>T	uc003mey.2	+	8	1452	c.1260G>T	c.(1258-1260)GAG>GAT	p.E420D	UNC5A_uc010jkg.1_Missense_Mutation_p.E380D	NM_133369	NP_588610	Q6ZN44	UNC5A_HUMAN	netrin receptor Unc5h1 precursor	420	Cytoplasmic (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane|plasma membrane				skin(1)	1	all_cancers(89;0.000119)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTGAGGCCGAGGAGTTCGTCT	0.667													32	38					9.8876e-21	5.46841e-20	0.000953801	1	0
HK3	3101	broad.mit.edu	37	5	176308797	176308797	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:176308797G>A	uc003mfa.2	-	17	2381	c.2289C>T	c.(2287-2289)ATC>ATT	p.I763I	HK3_uc003mez.2_Silent_p.I319I	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	763	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AATGTAAAAGGATGTGGCGGA	0.552													20	29					0	0	0.00121646	0	0
FGFR4	2264	broad.mit.edu	37	5	176519776	176519776	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:176519776G>A	uc003mfl.2	+	8	1215	c.1048G>A	c.(1048-1050)GTG>ATG	p.V350M	FGFR4_uc003mfm.2_Missense_Mutation_p.V350M|FGFR4_uc011dfu.1_Missense_Mutation_p.V350M|FGFR4_uc011dfw.1_Missense_Mutation_p.V350M|FGFR4_uc003mfo.2_Missense_Mutation_p.V350M	NM_002011	NP_002002	P22455	FGFR4_HUMAN	fibroblast growth factor receptor 4 isoform 1	350	Extracellular (Potential).				insulin receptor signaling pathway|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity			lung(11)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|prostate(1)	16	all_cancers(89;5.93e-05)|Renal(175;0.000269)|Lung NSC(126;0.0088)|all_lung(126;0.0142)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		Palifermin(DB00039)	CTGGCTCACGGTGCTGCCAGG	0.647										TSP Lung(9;0.080)			10	19					0	0	0.000978159	0	0
DBN1	1627	broad.mit.edu	37	5	176895126	176895126	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:176895126A>G	uc003mgy.2	-	3	410	c.238T>C	c.(238-240)TAC>CAC	p.Y80H	DBN1_uc003mgx.2_Missense_Mutation_p.Y82H|DBN1_uc010jkn.1_5'UTR|DBN1_uc003mgz.1_Missense_Mutation_p.Y17H	NM_004395	NP_004386	Q16643	DREB_HUMAN	drebrin 1 isoform a	80	ADF-H.				actin filament organization|regulation of dendrite development|regulation of neuronal synaptic plasticity	actomyosin|cytoplasm|dendrite	actin binding|profilin binding			breast(3)|ovary(1)|lung(1)|skin(1)	6	all_cancers(89;2.17e-05)|Renal(175;0.000269)|Lung NSC(126;0.0014)|all_lung(126;0.0025)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			ATGAGCACGTATTTTGGCAGA	0.612													76	105					0	0	0.000781405	0	0
ZNF354B	117608	broad.mit.edu	37	5	178309840	178309840	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:178309840G>A	uc003mjl.2	+	5	613	c.387G>A	c.(385-387)GAG>GAA	p.E129E	ZNF354B_uc003mjm.2_Silent_p.E129E	NM_058230	NP_478137	Q96LW1	Z354B_HUMAN	zinc finger protein 354B	129					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	all_cancers(89;0.000639)|all_epithelial(37;0.000109)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TATATGAAGAGAAATTAAAGA	0.328													14	18					0	0	0.000308642	0	0
GRM6	2916	broad.mit.edu	37	5	178413290	178413290	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:178413290G>A	uc003mjr.2	-	8	2144	c.1965C>T	c.(1963-1965)CTC>CTT	p.L655L	GRM6_uc003mjq.2_5'Flank|GRM6_uc010jla.1_Silent_p.L238L|GRM6_uc003mjs.1_Silent_p.L275L	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	655	Helical; Name=3; (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		GGCCCAGGAAGAGCCTGCGGG	0.637													11	6					0	0	0.000978159	0	0
GRM6	2916	broad.mit.edu	37	5	178418561	178418561	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr5:178418561C>T	uc003mjr.2	-	3	901	c.722_splice	c.e3-1	p.G241_splice	GRM6_uc010jla.1_5'Flank|GRM6_uc003mjs.1_5'Flank	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor						detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		CAGACCCCCCCTGGGCGTTGG	0.617													26	33					0	0	0.000878237	0	0
FARS2	10667	broad.mit.edu	37	6	5431349	5431349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr6:5431349G>A	uc010jnv.1	+	4	1184	c.848G>A	c.(847-849)GGA>GAA	p.G283E	FARS2_uc003mwr.2_Missense_Mutation_p.G283E|FARS2_uc003mws.1_Missense_Mutation_p.G283E	NM_006567	NP_006558	O95363	SYFM_HUMAN	phenylalanyl-tRNA synthetase 2 precursor	283					phenylalanyl-tRNA aminoacylation|tRNA processing	mitochondrial matrix|soluble fraction	ATP binding|magnesium ion binding|phenylalanine-tRNA ligase activity|tRNA binding				0	Ovarian(93;0.11)	all_hematologic(90;0.0104)			L-Phenylalanine(DB00120)	AACTTTCATGGAGAATGGCTG	0.418													50	50					0	0	0.000781405	0	0
JARID2	3720	broad.mit.edu	37	6	15501623	15501623	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr6:15501623C>T	uc003nbj.2	+	8	2675	c.2431C>T	c.(2431-2433)CAC>TAC	p.H811Y	JARID2_uc011div.1_Missense_Mutation_p.H639Y|JARID2_uc011diw.1_Missense_Mutation_p.H773Y	NM_004973	NP_004964	Q92833	JARD2_HUMAN	jumonji, AT rich interactive domain 2 protein	811					central nervous system development|chromatin modification|negative regulation of histone methylation|positive regulation of histone H3-K9 methylation|stem cell differentiation|transcription, DNA-dependent		chromatin binding			ovary(2)|lung(1)|pancreas(1)	4	Breast(50;0.0142)|Ovarian(93;0.103)	all_hematologic(90;0.00612)				CAATGACTTCCACAAGTGCAT	0.587													17	25					0	0	0.00121646	0	0
HLA-F	3134	broad.mit.edu	37	6	29695792	29695792	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr6:29695792C>A	uc011dlx.1	+	8	1341	c.1217C>A	c.(1216-1218)TCC>TAC	p.S406Y	HLA-F_uc011dly.1_Intron|LOC285830_uc003nnp.2_Intron|LOC285830_uc011dlz.1_Intron	NM_018950	NP_061823	P30511	HLAF_HUMAN	major histocompatibility complex, class I, F	Error:Variant_position_missing_in_P30511_after_alignment					antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex	MHC class I receptor activity				0						gagcaattttcccaccagagg	0.189													31	49					8.4185e-14	4.60621e-13	0.0024448	1	0
LY6G6C	80740	broad.mit.edu	37	6	31687075	31687076	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr6:31687075_31687076AC>TT	uc003nwh.2	-	3	229_230	c.175_176GT>AA	c.(175-177)GTT>AAT	p.V59N	LY6G6C_uc010jtd.2_RNA	NM_025261	NP_079537	O95867	LY66C_HUMAN	lymphocyte antigen 6 complex G6C precursor	59	UPAR/Ly6.					anchored to membrane|plasma membrane					0						ATTGGAGAAAACCCACATCTTA	0.589													78	79					0	0	6.4e-05	0	0
C4A	720	broad.mit.edu	37	6	31997551	31997551	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr6:31997551C>T	uc011dpd.1	+	29	3936	c.3885C>T	c.(3883-3885)TTC>TTT	p.F1295F	C4A_uc011dpe.1_Silent_p.F1295F	NM_007293	NP_009224	P0C0L4	CO4A_HUMAN	complement component 4A preproprotein	1295					complement activation, classical pathway|inflammatory response|innate immune response	extracellular space	endopeptidase inhibitor activity				0						AGGGCAGCTTCCAAGGGGGAT	0.642													11	19					0	0	0.00136819	0	0
HLA-DOA	3111	broad.mit.edu	37	6	32975148	32975148	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr6:32975148C>T	uc003ocr.2	-	3	629	c.553G>A	c.(553-555)GAC>AAC	p.D185N	HLA-DOA_uc010juj.2_Missense_Mutation_p.D155N|HLA-DOA_uc010jui.2_Missense_Mutation_p.D185N	NM_002119	NP_002110	P06340	DOA_HUMAN	major histocompatibility complex, class II, DO	185	Extracellular (Potential).|Alpha-2.|Ig-like C1-type.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endosome membrane|integral to membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0						TCATAGACGTCCTCGGCTGAG	0.627													50	71					0	0	0.000781405	0	0
COL11A2	1302	broad.mit.edu	37	6	33137244	33137244	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr6:33137244C>T	uc003ocx.1	-	51	3942	c.3714G>A	c.(3712-3714)GAG>GAA	p.E1238E	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Silent_p.E1152E|COL11A2_uc003ocz.1_Silent_p.E1131E	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	1238	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						ACTCTCCTTTCTCTCCACGTT	0.622													14	30					0	0	0.000958276	0	0
UHRF1BP1	54887	broad.mit.edu	37	6	34825929	34825929	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr6:34825929G>C	uc003oju.3	+	14	2030	c.1796G>C	c.(1795-1797)CGG>CCG	p.R599P	UHRF1BP1_uc010jvm.1_RNA|UHRF1BP1_uc010jvn.2_RNA|UHRF1BP1_uc010jvo.2_RNA	NM_017754	NP_060224	Q6BDS2	URFB1_HUMAN	ICBP90 binding protein 1	599										ovary(3)	3						AAGAGAGAGCGGGCAGAGTTG	0.473													3	61					0	0	0.00024832	0	0
CLPS	1208	broad.mit.edu	37	6	35765063	35765063	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr6:35765063C>T	uc003ole.1	-	1	40	c.3G>A	c.(1-3)ATG>ATA	p.M1I	CLPS_uc003olf.1_Missense_Mutation_p.M1I	NM_001832	NP_001823	P04118	COL_HUMAN	colipase preproprotein	1					lipid catabolic process|lipid digestion|retinoid metabolic process|steroid metabolic process	extracellular region					0						GGATCTTCTCCATGGTGAGTG	0.602													29	67					0	0	0.00127121	0	0
UBR2	23304	broad.mit.edu	37	6	42613219	42613219	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr6:42613219C>T	uc011dur.1	+	21	2300	c.2300C>T	c.(2299-2301)CCT>CTT	p.P767L	UBR2_uc011dus.1_Missense_Mutation_p.P412L|UBR2_uc003osh.2_RNA	NM_015255	NP_056070	Q8IWV8	UBR2_HUMAN	ubiquitin protein ligase E3 component n-recognin	767					cellular response to leucine|chromatin silencing|histone H2A ubiquitination|negative regulation of TOR signaling cascade	nucleus|plasma membrane	leucine binding|zinc ion binding			ovary(3)|pancreas(1)	4	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.004)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.196)			AGATTTAGTCCTGGAGTTGGA	0.343													28	47					0	0	0.00127121	0	0
GTPBP2	54676	broad.mit.edu	37	6	43590398	43590399	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr6:43590398_43590399CC>TT	uc003ovs.2	-	10	1475_1476	c.1438_1439GG>AA	c.(1438-1440)GGG>AAG	p.G480K	GTPBP2_uc010jyv.2_Missense_Mutation_p.G392K|GTPBP2_uc003ovt.1_Missense_Mutation_p.G480K	NM_019096	NP_061969	Q9BX10	GTPB2_HUMAN	GTP binding protein 2	480							GTP binding|GTPase activity			liver(1)|skin(1)	2	all_cancers(18;9.36e-06)|Lung NSC(15;0.00161)|all_lung(25;0.004)		all cancers(41;0.000501)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.0826)|OV - Ovarian serous cystadenocarcinoma(102;0.167)			GTCAAAGTCCCCAAGCGCCAGT	0.574													55	69					0	0	6.4e-05	0	0
SPATS1	221409	broad.mit.edu	37	6	44310885	44310885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr6:44310885C>T	uc003oxk.2	+	1	400	c.53C>T	c.(52-54)TCC>TTC	p.S18F	SPATS1_uc003oxg.2_Intron|SPATS1_uc010jzb.2_5'UTR	NM_145026	NP_659463	Q496A3	SPAS1_HUMAN	spermatogenesis associated, serine-rich 1	18										skin(1)	1	all_lung(25;0.00469)|Ovarian(13;0.0273)|all_hematologic(164;0.208)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			CGTCTCCCCTCCATCTCAAGC	0.512													33	34					0	0	0.0024448	0	0
EFHC1	114327	broad.mit.edu	37	6	52344579	52344580	+	Missense_Mutation	DNP	CA	AC	AC			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr6:52344579_52344580CA>AC	uc003pap.3	+	9	1849_1850	c.1634_1635CA>AC	c.(1633-1635)GCA>GAC	p.A545D	EFHC1_uc011dwv.1_Missense_Mutation_p.A454D|EFHC1_uc011dww.1_Missense_Mutation_p.A526D	NM_018100	NP_060570	Q5JVL4	EFHC1_HUMAN	EF-hand domain (C-terminal) containing 1	545						axoneme|neuronal cell body	calcium ion binding|protein C-terminus binding			ovary(2)|skin(1)	3	Lung NSC(77;0.109)					GCTCCAGAAGCAGAAAGGTGTG	0.426													13	21					0	0	6.4e-05	0	0
BEND6	221336	broad.mit.edu	37	6	56846633	56846633	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr6:56846633G>A	uc010kab.2	+	2	611	c.25G>A	c.(25-27)GAA>AAA	p.E9K	BEND6_uc003pdg.2_RNA	NM_152731	NP_689944	Q5SZJ8	BEND6_HUMAN	BEN domain containing 6	9											0						GCAGACAGATGAAATTACCAA	0.378													41	60					0	0	0.00222228	0	0
COL19A1	1310	broad.mit.edu	37	6	70859924	70859924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr6:70859924C>T	uc003pfc.1	+	30	2141	c.2024C>T	c.(2023-2025)CCC>CTC	p.P675L	COL19A1_uc010kam.1_Missense_Mutation_p.P571L	NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	675	Triple-helical region 3 (COL3).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						CTGCCAGGCCCCCCAGGTGAC	0.488													15	17					0	0	0.000422831	0	0
IMPG1	3617	broad.mit.edu	37	6	76660470	76660470	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr6:76660470G>A	uc003pik.1	-	13	1763	c.1633C>T	c.(1633-1635)CAT>TAT	p.H545Y		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	545					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				TCCAAGAAATGATCTGGGACA	0.488													16	21					0	0	0.000958276	0	0
SNX14	57231	broad.mit.edu	37	6	86281875	86281876	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr6:86281875_86281876CC>TT	uc003pkr.2	-	4	589_590	c.396_397GG>AA	c.(394-399)AAGGTT>AAAATT	p.V133I	SNX14_uc003pkq.2_5'UTR|SNX14_uc011dzg.1_Missense_Mutation_p.V81I|SNX14_uc003pks.2_Missense_Mutation_p.V133I|SNX14_uc003pkt.2_Missense_Mutation_p.V133I	NM_153816	NP_722523	Q9Y5W7	SNX14_HUMAN	sorting nexin 14 isoform a	133	PXA.				cell communication|protein transport	integral to membrane	phosphatidylinositol binding|signal transducer activity				0		all_cancers(76;4.83e-07)|Acute lymphoblastic leukemia(125;3.3e-08)|Prostate(29;2.55e-07)|all_hematologic(105;3.66e-05)|all_epithelial(107;0.000695)|Lung NSC(302;0.197)|all_lung(197;0.24)		BRCA - Breast invasive adenocarcinoma(108;0.0423)		GATGCATCAACCTTGGAAGAAA	0.302													37	65					0	0	6.4e-05	0	0
ORC3L	23595	broad.mit.edu	37	6	88318858	88318858	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr6:88318858C>T	uc003pmh.2	+	7	668	c.624C>T	c.(622-624)AGC>AGT	p.S208S	ORC3L_uc011dzl.1_Silent_p.S208S|ORC3L_uc011dzm.1_Silent_p.S208S|ORC3L_uc011dzn.1_RNA|ORC3L_uc003pmg.2_Silent_p.S208S|ORC3L_uc003pmi.2_Silent_p.S208S|ORC3L_uc011dzo.1_Silent_p.S65S|ORC3L_uc011dzp.1_Silent_p.S65S	NM_012381	NP_036513	Q9UBD5	ORC3_HUMAN	origin recognition complex, subunit 3 isoform 2	208					cell cycle checkpoint|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	nuclear origin of replication recognition complex|nucleoplasm	DNA replication origin binding|protein binding				0		all_cancers(76;9.05e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;5.29e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.000114)		BRCA - Breast invasive adenocarcinoma(108;0.0469)		CTACTTCTAGCCAATGGCAGT	0.393													37	43					0	0	0.000953801	0	0
ANKRD6	22881	broad.mit.edu	37	6	90305674	90305674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr6:90305674C>T	uc003pni.3	+	3	501	c.160C>T	c.(160-162)CAT>TAT	p.H54Y	ANKRD6_uc003pne.3_Missense_Mutation_p.H54Y|ANKRD6_uc003pnf.3_Missense_Mutation_p.H54Y|ANKRD6_uc011dzy.1_Missense_Mutation_p.H54Y|ANKRD6_uc010kcd.2_Missense_Mutation_p.H54Y|LYRM2_uc010kce.1_Intron	NM_014942	NP_055757	Q9Y2G4	ANKR6_HUMAN	ankyrin repeat domain 6	54	ANK 2.						protein binding			ovary(2)|pancreas(1)	3		all_cancers(76;1.22e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.79e-07)|all_epithelial(107;1.83e-05)|Lung NSC(302;0.239)		BRCA - Breast invasive adenocarcinoma(108;0.0209)		CAATAAGGGCCATCTTCCTGT	0.512													10	13					0	0	0.00136819	0	0
NR2E1	7101	broad.mit.edu	37	6	108497890	108497891	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr6:108497890_108497891CC>TT	uc003psg.2	+	4	1198_1199	c.443_444CC>TT	c.(442-444)TCC>TTT	p.S148F		NM_003269	NP_003260	Q9Y466	NR2E1_HUMAN	nuclear receptor subfamily 2, group E, member 1	148					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(87;8.13e-05)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00866)|Colorectal(196;0.0637)		BRCA - Breast invasive adenocarcinoma(108;0.013)|Epithelial(106;0.0521)|all cancers(137;0.068)|OV - Ovarian serous cystadenocarcinoma(136;0.0689)		GCCGCGGTGTCCACCACTCCAG	0.718													7	0					0	0	6.4e-05	0	0
LPA	4018	broad.mit.edu	37	6	161071386	161071386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr6:161071386C>T	uc003qtl.2	-	3	313	c.193G>A	c.(193-195)GAA>AAA	p.E65K		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	2573	Kringle 23.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	GGGTAGTTTTCTGTGGTCCTA	0.418													47	11					0	0	0.000781405	0	0
DGKB	1607	broad.mit.edu	37	7	14378184	14378184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr7:14378184C>T	uc003ssz.2	-	22	2268	c.2081G>A	c.(2080-2082)AGG>AAG	p.R694K	DGKB_uc011jxt.1_Missense_Mutation_p.R675K|DGKB_uc003sta.2_Missense_Mutation_p.R694K|DGKB_uc011jxu.1_Missense_Mutation_p.R693K	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	694					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	GACGGTGGTCCTTTTGTCAGA	0.393													25	90					0	0	0.0024448	0	0
DNAH11	8701	broad.mit.edu	37	7	21678670	21678670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr7:21678670C>T	uc003svc.2	+	28	4977	c.4946C>T	c.(4945-4947)GCT>GTT	p.A1649V		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1649	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TCAAAAGGAGCTCAGCCTAAA	0.403									Kartagener_syndrome				8	33					0	0	0.000157383	0	0
RAPGEF5	9771	broad.mit.edu	37	7	22196451	22196451	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr7:22196451C>T	uc003svg.2	-	16	1467	c.1154G>A	c.(1153-1155)GGA>GAA	p.G385E	RAPGEF5_uc011jyl.1_Missense_Mutation_p.G66E	NM_012294	NP_036426	Q92565	RPGF5_HUMAN	Rap guanine nucleotide exchange factor (GEF) 5	235					nervous system development|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	nucleus	GTP-dependent protein binding|Rap guanyl-nucleotide exchange factor activity			ovary(1)	1						AGTCACAGTTCCTCTATGCTG	0.458													17	22					0	0	0.00188189	0	0
CCDC126	90693	broad.mit.edu	37	7	23682705	23682705	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr7:23682705A>T	uc003swl.2	+	4	851	c.394A>T	c.(394-396)AGA>TGA	p.R132*	CCDC126_uc003swm.2_Nonsense_Mutation_p.R132*|CCDC126_uc003swn.2_Nonsense_Mutation_p.R132*	NM_138771	NP_620126	Q96EE4	CC126_HUMAN	coiled-coil domain containing 126 precursor	132						extracellular region				ovary(1)|skin(1)	2						CACAAATAAAAGAACGAATGT	0.423													5	28					0	0	0.000602214	0	0
FKBP9	11328	broad.mit.edu	37	7	33014933	33014933	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr7:33014933G>A	uc003tdh.2	+	3	688	c.507G>A	c.(505-507)GTG>GTA	p.V169V	AVL9_uc011kai.1_Intron|FKBP9_uc011kak.1_RNA|FKBP9_uc011kal.1_Silent_p.V222V|FKBP9_uc003tdg.2_Silent_p.V169V|FKBP9_uc010kwm.2_Silent_p.V76V	NM_007270	NP_009201	O95302	FKBP9_HUMAN	FK506 binding protein 9 precursor	169	PPIase FKBP-type 2.				protein folding	endoplasmic reticulum|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity			central_nervous_system(13)|ovary(1)	14			GBM - Glioblastoma multiforme(11;0.0156)			CTGATTTTGTGAGGTACCACT	0.473													10	45					0	0	0.000978159	0	0
POU6F2	11281	broad.mit.edu	37	7	39243858	39243858	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr7:39243858C>T	uc003thb.1	+	3	257	c.215C>T	c.(214-216)TCA>TTA	p.S72L	POU6F2_uc010kxo.2_Missense_Mutation_p.S64L	NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	72					central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						CCAGCATTATCAGACCCAGGC	0.493													13	11					0	0	0.000219431	0	0
CDK13	8621	broad.mit.edu	37	7	40133922	40133922	+	Silent	SNP	T	C	C			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr7:40133922T>C	uc003thh.3	+	14	4164	c.3882T>C	c.(3880-3882)CCT>CCC	p.P1294P	CDK13_uc003thi.3_Silent_p.P1234P|CDK13_uc003thj.2_Silent_p.P345P|CDK13_uc003thk.2_Silent_p.P227P	NM_003718	NP_003709	Q14004	CDK13_HUMAN	cell division cycle 2-like 5 isoform 1	1294					alternative nuclear mRNA splicing, via spliceosome|hemopoiesis|interspecies interaction between organisms|phosphorylation of RNA polymerase II C-terminal domain|positive regulation of cell proliferation|regulation of mitosis	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|skin(2)|ovary(1)	5						TAACTGACCCTCATGCCGGAG	0.522													3	92					0	0	6.4e-05	0	0
AEBP1	165	broad.mit.edu	37	7	44152505	44152505	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr7:44152505G>A	uc003tkb.2	+	18	2871	c.2566G>A	c.(2566-2568)GGG>AGG	p.G856R	AEBP1_uc003tkc.3_Missense_Mutation_p.G431R|AEBP1_uc003tkd.2_Missense_Mutation_p.G106R	NM_001129	NP_001120	Q8IUX7	AEBP1_HUMAN	adipocyte enhancer binding protein 1 precursor	856	Interaction with PTEN (By similarity).				cell adhesion|muscle organ development|proteolysis|skeletal system development	cytoplasm|extracellular space|nucleus	DNA binding|metallocarboxypeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CCCCCGGACCGGGAGTGAGTC	0.662													57	70					0	0	0.000781405	0	0
ABCA13	154664	broad.mit.edu	37	7	48269475	48269475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr7:48269475C>T	uc003toq.2	+	7	711	c.686C>T	c.(685-687)TCC>TTC	p.S229F	ABCA13_uc003top.2_3'UTR|ABCA13_uc010kyr.2_5'UTR	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	229					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CAAACTTTTTCCCAGGTTTCT	0.408													127	107					0	0	0.000781405	0	0
COBL	23242	broad.mit.edu	37	7	51111375	51111375	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr7:51111375C>T	uc003tpr.3	-	8	1296	c.1111G>A	c.(1111-1113)GGG>AGG	p.G371R	COBL_uc003tps.2_Missense_Mutation_p.G428R|COBL_uc011kcl.1_Missense_Mutation_p.G371R|COBL_uc010kzc.2_Missense_Mutation_p.G371R|COBL_uc003tpp.3_Missense_Mutation_p.G157R|COBL_uc003tpq.3_Missense_Mutation_p.G312R	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	371										skin(3)|ovary(2)	5	Glioma(55;0.08)					CTGCCAGACCCCAGGGGCAGG	0.622													16	16					0	0	0.00074312	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113519570	113519570	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr7:113519570A>C	uc010ljy.1	-	4	1608	c.1577T>G	c.(1576-1578)GTT>GGT	p.V526G		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	526					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TTTTTCATTAACACCTAAATA	0.353													6	1					0	0	0.00116845	0	0
NUP205	23165	broad.mit.edu	37	7	135292009	135292009	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr7:135292009C>A	uc003vsw.2	+	22	3116	c.3085C>A	c.(3085-3087)CCT>ACT	p.P1029T		NM_015135	NP_055950	Q92621	NU205_HUMAN	nucleoporin 205kDa	1029					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6						GTTAGGTTGCCCTCGGACATG	0.438													5	41					0.000442599	0.00237521	0.000442599	1	0
TRYX3	136541	broad.mit.edu	37	7	141955395	141955395	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr7:141955395G>A	uc003vxb.2	-	2	459	c.139C>T	c.(139-141)CAC>TAC	p.H47Y	TRYX3_uc003vxc.3_Missense_Mutation_p.H47Y	NM_001001317	NP_001001317	Q8IYP2	PRS58_HUMAN	trypsin X3 precursor	47	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0	Melanoma(164;0.0272)					CAAAGCGGGTGGATCAGGACT	0.498													13	3					0	0	0.00136819	0	0
ANGPT2	285	broad.mit.edu	37	8	6372269	6372269	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr8:6372269C>G	uc003wqj.3	-	6	1290	c.961G>C	c.(961-963)GGG>CGG	p.G321R	MCPH1_uc003wqi.2_Intron|ANGPT2_uc003wqk.3_Missense_Mutation_p.G320R|ANGPT2_uc010lri.2_Missense_Mutation_p.G269R|ANGPT2_uc003wql.3_Missense_Mutation_p.G320R	NM_001147	NP_001138	O15123	ANGP2_HUMAN	angiopoietin 2 isoform a precursor	321	Fibrinogen C-terminal.				angiogenesis|blood coagulation|leukocyte migration|negative regulation of blood vessel endothelial cell migration|negative regulation of positive chemotaxis|Tie receptor signaling pathway	extracellular space	metal ion binding|receptor tyrosine kinase binding			upper_aerodigestive_tract(1)	1		Hepatocellular(245;0.0663)		Colorectal(4;0.0142)|READ - Rectum adenocarcinoma(4;0.19)|COAD - Colon adenocarcinoma(4;0.226)		ATTGTCCACCCGCCTCCTCCA	0.498													4	211					0	0	0.000602214	0	0
C8orf74	203076	broad.mit.edu	37	8	10557879	10557879	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr8:10557879C>T	uc003wtd.1	+	4	812	c.783C>T	c.(781-783)GCC>GCT	p.A261A	C8orf74_uc003wte.1_RNA	NM_001040032	NP_001035121	Q6P047	CH074_HUMAN	hypothetical protein LOC203076	261											0				COAD - Colon adenocarcinoma(149;0.0811)		ACCTCAACGCCCCCACCCCTA	0.592													9	25					0	0	0.000442599	0	0
CSGALNACT1	55790	broad.mit.edu	37	8	19316153	19316153	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr8:19316153C>T	uc011kyn.1	-	5	1699	c.635G>A	c.(634-636)GGG>GAG	p.G212E	CSGALNACT1_uc011kyo.1_Missense_Mutation_p.G212E|CSGALNACT1_uc003wzg.2_RNA|CSGALNACT1_uc011kyp.1_Missense_Mutation_p.G211E|CSGALNACT1_uc003wzh.2_RNA	NM_001130518	NP_001123990	Q8TDX6	CGAT1_HUMAN	chondroitin sulfate	212	Lumenal (Potential).				anatomical structure morphogenesis|cell proliferation|cell recognition|chondroitin sulfate biosynthetic process|chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process|extracellular matrix organization|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|heparin biosynthetic process|nervous system development|UDP-glucuronate metabolic process|UDP-N-acetylgalactosamine metabolic process	Golgi cisterna membrane|integral to Golgi membrane|soluble fraction	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|glucuronosyltransferase activity|glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|peptidoglycan glycosyltransferase activity			central_nervous_system(2)|ovary(1)	3				Colorectal(111;0.182)		TCGGTAGATCCCTGTTAAGAG	0.403													69	61					0	0	0.000781405	0	0
LGI3	203190	broad.mit.edu	37	8	22011507	22011507	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr8:22011507G>A	uc003xav.2	-	5	757	c.468C>T	c.(466-468)TTC>TTT	p.F156F	LGI3_uc010ltu.2_Silent_p.F132F	NM_139278	NP_644807	Q8N145	LGI3_HUMAN	leucine-rich repeat LGI family, member 3	156	LRR 3.				exocytosis	cell junction|extracellular region|synaptic vesicle|synaptosome				ovary(1)	1				Colorectal(74;0.00189)|COAD - Colon adenocarcinoma(73;0.0612)|READ - Rectum adenocarcinoma(644;0.0999)		CCAGGGGCCGGAAGATGTCTC	0.577													25	57					0	0	0.000878237	0	0
ADAM28	10863	broad.mit.edu	37	8	24171031	24171031	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr8:24171031G>A	uc003xdy.2	+	6	597	c.514G>A	c.(514-516)GAT>AAT	p.D172N	ADAM28_uc003xdx.2_Missense_Mutation_p.D172N|ADAM28_uc011kzz.1_Intron|ADAM28_uc011laa.1_RNA	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	172	Cysteine switch (By similarity).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		CTGTGGGATGGATGGTGTGTT	0.433													13	6					0	0	0.000566183	0	0
CDCA2	157313	broad.mit.edu	37	8	25340955	25340955	+	Missense_Mutation	SNP	C	T	T	rs144887977		TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr8:25340955C>T	uc003xep.1	+	9	1552	c.1073C>T	c.(1072-1074)CCG>CTG	p.P358L	PPP2R2A_uc003xek.2_Intron|CDCA2_uc011lae.1_Missense_Mutation_p.P358L|CDCA2_uc003xeq.1_Missense_Mutation_p.P343L|CDCA2_uc003xer.1_Missense_Mutation_p.P21L	NM_152562	NP_689775	Q69YH5	CDCA2_HUMAN	cell division cycle associated 2	358					cell division|mitosis	cytoplasm|nucleus					0		all_cancers(63;0.0378)|Ovarian(32;0.000878)|all_epithelial(46;0.0162)|Breast(100;0.0164)|Prostate(55;0.191)		UCEC - Uterine corpus endometrioid carcinoma (27;0.022)|Epithelial(17;1.37e-11)|Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0443)		GGGACTCATCCGAGCTTAATC	0.318													49	31					0	0	0.000781405	0	0
GSR	2936	broad.mit.edu	37	8	30550507	30550507	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr8:30550507C>T	uc003xih.1	-	8	952	c.861G>A	c.(859-861)GTG>GTA	p.V287V		NM_000637	NP_000628	P00390	GSHR_HUMAN	glutathione reductase precursor	287					cell redox homeostasis|nucleobase, nucleoside and nucleotide interconversion	cytosol|mitochondrion	electron carrier activity|glutathione-disulfide reductase activity			ovary(2)|pancreas(2)|central_nervous_system(1)	5				KIRC - Kidney renal clear cell carcinoma(542;0.105)|Kidney(114;0.125)	Carmustine(DB00262)|Glutathione(DB00143)|NADH(DB00157)	TCAGCACCTCCACGCCAGCGT	0.527													24	18					0	0	0.00106085	0	0
TEX15	56154	broad.mit.edu	37	8	30703654	30703654	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr8:30703654G>A	uc003xil.2	-	1	2880	c.2880C>T	c.(2878-2880)TCC>TCT	p.S960S		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	960										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		TTCGTCCTTGGGATAATGAAG	0.343													49	36					0	0	0.000781405	0	0
ADAM18	8749	broad.mit.edu	37	8	39468211	39468211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr8:39468211C>T	uc003xni.2	+	6	508	c.508C>T	c.(508-510)CCT>TCT	p.P170S	ADAM18_uc003xnh.2_Missense_Mutation_p.P170S|ADAM18_uc010lww.2_Intron|ADAM18_uc010lwx.2_Missense_Mutation_p.P170S	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	170					cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			CTACAAAGTTCCTTTAAACTC	0.323													9	32					0	0	0.000673444	0	0
C8orf4	56892	broad.mit.edu	37	8	40011117	40011117	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr8:40011117C>T	uc003xnq.1	+	1	129	c.66C>T	c.(64-66)ATC>ATT	p.I22I		NM_020130	NP_064515	Q9NR00	CH004_HUMAN	thyroid cancer-1	22					apoptosis					ovary(1)	1	Ovarian(28;0.0173)	all_cancers(7;5.34e-21)|all_epithelial(6;1.04e-14)|Lung NSC(58;9.35e-06)|all_lung(54;1.39e-05)|Hepatocellular(245;0.00745)|Breast(189;0.0334)|Colorectal(162;0.0815)|Myeloproliferative disorder(644;0.116)|Esophageal squamous(32;0.141)	LUSC - Lung squamous cell carcinoma(45;0.000149)	KIRC - Kidney renal clear cell carcinoma(67;0.0923)|Kidney(114;0.111)		GCCCATCCATCCATGGCTACC	0.517													12	39					0	0	0.00185496	0	0
AGPAT6	137964	broad.mit.edu	37	8	41456738	41456738	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr8:41456738T>A	uc003xnz.2	+	2	1019	c.80T>A	c.(79-81)CTC>CAC	p.L27H		NM_178819	NP_848934	Q86UL3	GPAT4_HUMAN	lysophosphatidic acid acyltransferase zeta	27					acyl-CoA metabolic process|lactation|phosphatidylcholine biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|membrane fraction	glycerol-3-phosphate O-acyltransferase activity				0	Ovarian(28;0.00769)|Colorectal(14;0.0202)|Lung SC(25;0.211)	all_lung(54;0.0131)|Lung NSC(58;0.0363)|Hepatocellular(245;0.0462)|Esophageal squamous(32;0.0844)	OV - Ovarian serous cystadenocarcinoma(14;0.00126)|Colorectal(10;0.0014)|Lung(22;0.00177)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0147)			ACCCTCCTTCTCGTTTTCATC	0.463													65	41					0	0	0.000781405	0	0
SDR16C5	195814	broad.mit.edu	37	8	57228681	57228681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr8:57228681C>T	uc003xsy.1	-	2	864	c.226G>A	c.(226-228)GGG>AGG	p.G76R	SDR16C5_uc010lyk.1_Missense_Mutation_p.G76R|SDR16C5_uc010lyl.1_Missense_Mutation_p.G76R	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	76					detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TCCTCATTCCCCTCCTTATTG	0.517													34	68					0	0	0.000814825	0	0
CHD7	55636	broad.mit.edu	37	8	61750375	61750375	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr8:61750375G>C	uc003xue.2	+	18	4811	c.4334G>C	c.(4333-4335)AGA>ACA	p.R1445T		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	1445	Helicase C-terminal.				central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			ATGAGTGGAAGAGAAAATGCT	0.388													5	18					0	0	0.00116845	0	0
PREX2	80243	broad.mit.edu	37	8	68864761	68864761	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr8:68864761C>T	uc003xxv.1	+	1	159	c.132C>T	c.(130-132)TTC>TTT	p.F44F	PREX2_uc003xxu.1_Silent_p.F44F|PREX2_uc011lez.1_Silent_p.F44F|PREX2_uc003xxt.2_Silent_p.F44F	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	44	DH.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						CGCTGGAGTTCCTGGTGTCGG	0.602													4	6					0	0	0.000602214	0	0
CNGB3	54714	broad.mit.edu	37	8	87588076	87588076	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr8:87588076C>T	uc003ydx.2	-	18	2432	c.2386G>A	c.(2386-2388)GAA>AAA	p.E796K	CNGB3_uc010maj.2_Missense_Mutation_p.E653K	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	796	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						AGAACCTCTTCTCCGCCCTCA	0.423													29	27					0	0	0.000692331	0	0
SLC26A7	115111	broad.mit.edu	37	8	92364064	92364064	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr8:92364064C>T	uc003yex.2	+	11	1445	c.1167C>T	c.(1165-1167)TTC>TTT	p.F389F	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Silent_p.F389F|SLC26A7_uc003yfa.2_Silent_p.F389F	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	389	Helical; (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			CTTGCATTTTCGTCCTTATAG	0.353													36	24					0	0	0.000680045	0	0
KIAA1429	25962	broad.mit.edu	37	8	95502190	95502190	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr8:95502190G>A	uc003ygo.1	-	23	5274	c.5261C>T	c.(5260-5262)CCA>CTA	p.P1754L	KIAA1429_uc010maz.1_RNA	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	1754					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			GGGTCGTAATGGTGGAAGAGG	0.423													34	33					0	0	0.00170553	0	0
UBR5	51366	broad.mit.edu	37	8	103279190	103279190	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr8:103279190G>A	uc003ykr.1	-	52	7440	c.7407C>T	c.(7405-7407)TCC>TCT	p.S2469S	UBR5_uc003yks.1_Silent_p.S2469S|UBR5_uc003ykq.2_5'UTR	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	2469	HECT.				cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			CCTTTTCTGAGGAGTCTACTA	0.358													62	157					0	0	0.000781405	0	0
PLEC	5339	broad.mit.edu	37	8	144998070	144998070	+	Silent	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr8:144998070C>T	uc003zaf.1	-	31	6608	c.6438G>A	c.(6436-6438)GAG>GAA	p.E2146E	PLEC_uc003zab.1_Silent_p.E2009E|PLEC_uc003zac.1_Silent_p.E2013E|PLEC_uc003zad.2_Silent_p.E2009E|PLEC_uc003zae.1_Silent_p.E1977E|PLEC_uc003zag.1_Silent_p.E1987E|PLEC_uc003zah.2_Silent_p.E1995E|PLEC_uc003zaj.2_Silent_p.E2036E	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	2146	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GCTCGACTTCCTCCAGCGCCG	0.756													16	10					0	0	0.00188189	0	0
PLEC	5339	broad.mit.edu	37	8	144998603	144998604	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr8:144998603_144998604CC>TT	uc003zaf.1	-	31	6074_6075	c.5904_5905GG>AA	c.(5902-5907)GCGGAG>GCAAAG	p.E1969K	PLEC_uc003zab.1_Missense_Mutation_p.E1832K|PLEC_uc003zac.1_Missense_Mutation_p.E1836K|PLEC_uc003zad.2_Missense_Mutation_p.E1832K|PLEC_uc003zae.1_Missense_Mutation_p.E1800K|PLEC_uc003zag.1_Missense_Mutation_p.E1810K|PLEC_uc003zah.2_Missense_Mutation_p.E1818K|PLEC_uc003zaj.2_Missense_Mutation_p.E1859K	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	1969	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						AGCACCCGCTCCGCCTCGGCCC	0.743													6	5					0	0	6.4e-05	0	0
PIGO	84720	broad.mit.edu	37	9	35093548	35093549	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr9:35093548_35093549GT>AA	uc003zwd.2	-	5	1204_1205	c.808_809AC>TT	c.(808-810)ACA>TTA	p.T270L	PIGO_uc003zwc.1_Missense_Mutation_p.T270L|PIGO_uc003zwe.2_Missense_Mutation_p.T270L|PIGO_uc003zwf.2_Missense_Mutation_p.T270L|PIGO_uc003zwg.1_5'UTR	NM_032634	NP_116023	Q8TEQ8	PIGO_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	270					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	transferase activity			large_intestine(1)|ovary(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			TACCAGCAGTGTGTCATTCTCC	0.485													8	2					0	0	6.4e-05	0	0
ZNF658	26149	broad.mit.edu	37	9	40773146	40773146	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr9:40773146C>G	uc004abs.2	-	5	2281	c.2129G>C	c.(2128-2130)GGG>GCG	p.G710A	ZNF658_uc010mmm.1_Intron|ZNF658_uc010mmn.1_Missense_Mutation_p.G710A	NM_033160	NP_149350	Q5TYW1	ZN658_HUMAN	zinc finger protein 658	710					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		GGGTTTCTCCCCCGTGTGAAT	0.403													4	163					0	0	0.000602214	0	0
GNAQ	2776	broad.mit.edu	37	9	80646121	80646121	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr9:80646121G>A	uc004akw.2	-	1	72	c.31C>T	c.(31-33)CTG>TTG	p.L11L		NM_002072	NP_002063	P50148	GNAQ_HUMAN	guanine nucleotide binding protein (G protein),	11					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|glutamate signaling pathway|negative regulation of protein kinase activity|platelet activation|protein ADP-ribosylation|protein stabilization|regulation of action potential|regulation of catenin import into nucleus	cytoplasm|heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activator activity|GTPase activity|signal transducer activity			eye(136)|skin(44)|meninges(11)|ovary(1)|kidney(1)	193						TCCTCGCTCAGGCAGCACGCC	0.682			Mis		uveal melanoma								15	8					0	0	0.000566183	0	0
PTCH1	5727	broad.mit.edu	37	9	98231241	98231241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr9:98231241G>A	uc004avk.3	-	14	2230	c.2042C>T	c.(2041-2043)CCG>CTG	p.P681L	PTCH1_uc010mro.2_Missense_Mutation_p.P530L|PTCH1_uc010mrp.2_Missense_Mutation_p.P530L|PTCH1_uc010mrq.2_Missense_Mutation_p.P530L|PTCH1_uc004avl.3_Missense_Mutation_p.P530L|PTCH1_uc010mrr.2_Missense_Mutation_p.P615L|PTCH1_uc004avm.3_Missense_Mutation_p.P680L|PTCH1_uc010mrs.1_Missense_Mutation_p.P349L	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	681	Cytoplasmic (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity	p.P681L(1)		skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				CTCGGAGCGCGGCTCAGCGGT	0.622									Basal_Cell_Nevus_syndrome				37	6					0	0	0.00111076	0	0
COL15A1	1306	broad.mit.edu	37	9	101748303	101748303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr9:101748303C>T	uc004azb.1	+	3	763	c.557C>T	c.(556-558)CCC>CTC	p.P186L	COL15A1_uc004aza.2_Missense_Mutation_p.P186L	NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	186	TSP N-terminal.				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				AGCCGCATCCCCTTCCAGCGG	0.572													41	8					0	0	0.00128727	0	0
GRIN3A	116443	broad.mit.edu	37	9	104449164	104449164	+	Missense_Mutation	SNP	C	T	T	rs145326290	by1000genomes	TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr9:104449164C>T	uc004bbp.1	-	2	1619	c.1018G>A	c.(1018-1020)GAA>AAA	p.E340K	GRIN3A_uc004bbq.1_Missense_Mutation_p.E340K	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	340	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	GTTGTAATTTCGAAAATCCGC	0.517													21	4					0	0	0.00188189	0	0
TRAF1	7185	broad.mit.edu	37	9	123667328	123667328	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr9:123667328G>A	uc004bku.1	-	8	1793	c.1221C>T	c.(1219-1221)TTC>TTT	p.F407F	TRAF1_uc011lyg.1_Silent_p.F285F|TRAF1_uc010mvl.1_Silent_p.F407F	NM_005658	NP_005649	Q13077	TRAF1_HUMAN	TNF receptor-associated factor 1	407	MATH.				apoptosis|positive regulation of NF-kappaB transcription factor activity|protein complex assembly|regulation of apoptosis|signal transduction	cytoplasm	protein binding|zinc ion binding			skin(2)|ovary(1)	3						TGCACTTGAGGAACATTGTGT	0.587													37	3					0	0	0.00195071	0	0
RABGAP1	23637	broad.mit.edu	37	9	125852639	125852639	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr9:125852639T>A	uc011lzh.1	+	21	2737	c.2603T>A	c.(2602-2604)ATT>AAT	p.I868N	RABGAP1_uc004bnl.3_RNA|RABGAP1_uc011lzj.1_Missense_Mutation_p.I207N	NM_012197	NP_036329	Q9Y3P9	RBGP1_HUMAN	RAB GTPase activating protein 1	868	Potential.				cell cycle	centrosome|cytosol|microtubule associated complex	Rab GTPase activator activity|tubulin binding			ovary(3)|kidney(2)	5						ACCAGCAAGATTGCACTACGG	0.478													21	4					0	0	0.00047179	0	0
RABGAP1	23637	broad.mit.edu	37	9	125852642	125852642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr9:125852642C>T	uc011lzh.1	+	21	2740	c.2606C>T	c.(2605-2607)GCA>GTA	p.A869V	RABGAP1_uc004bnl.3_RNA|RABGAP1_uc011lzj.1_Missense_Mutation_p.A208V	NM_012197	NP_036329	Q9Y3P9	RBGP1_HUMAN	RAB GTPase activating protein 1	869	Potential.				cell cycle	centrosome|cytosol|microtubule associated complex	Rab GTPase activator activity|tubulin binding			ovary(3)|kidney(2)	5						AGCAAGATTGCACTACGGAAG	0.473													19	4					0	0	0.00229938	0	0
C9orf119	375757	broad.mit.edu	37	9	131048271	131048271	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr9:131048271A>G	uc004bup.2	+	4	602	c.602A>G	c.(601-603)AAT>AGT	p.N201S	C9orf119_uc010mxx.1_Missense_Mutation_p.N201S	NM_001040011	NP_001035100	Q1ZZU3	SWI5_HUMAN	hypothetical protein LOC375757	201					double-strand break repair via homologous recombination	Swi5-Sfr1 complex	protein binding				0						CACGAGTACAATGACATCAAG	0.527													56	10					0	0	0.000781405	0	0
SPTAN1	6709	broad.mit.edu	37	9	131329157	131329158	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr9:131329157_131329158CC>TT	uc004bvl.3	+	2	251_252	c.138_139CC>TT	c.(136-141)TTCCAG>TTTTAG	p.Q47*	SPTAN1_uc011mbg.1_Nonsense_Mutation_p.Q47*|SPTAN1_uc011mbh.1_Nonsense_Mutation_p.Q59*|SPTAN1_uc004bvm.3_Nonsense_Mutation_p.Q47*|SPTAN1_uc004bvn.3_Nonsense_Mutation_p.Q47*	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	47	Spectrin 2.				actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						CCTATCGATTCCAGTTCTTTCA	0.47													59	7					0	0	6.4e-05	0	0
CACNA1B	774	broad.mit.edu	37	9	140991032	140991032	+	Silent	SNP	C	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr9:140991032C>A	uc004cog.2	+	36	5336	c.5191C>A	c.(5191-5193)CGG>AGG	p.R1731R	CACNA1B_uc004coi.2_Silent_p.R943R|CACNA1B_uc004cok.1_RNA|CACNA1B_uc010ncp.1_Intron	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1731	EF-hand.|Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	TGAGTTCATCCGGGTCTGGGC	0.562													4	34					0.000602214	0.00322615	0.000602214	1	0
SFRS17A	8227	broad.mit.edu	37	X	1718147	1718147	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chrX:1718147G>A	uc004cqa.2	+	4	1170	c.974G>A	c.(973-975)AGG>AAG	p.R325K	SFRS17A_uc010ncx.1_Missense_Mutation_p.R325K|SFRS17A_uc004cqb.2_RNA|ASMT_uc004cqd.2_Intron	NM_005088	NP_005079	Q02040	AK17A_HUMAN	DNA segment on chromosome X and Y (unique) 155	325					B cell activation|mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|signal transduction	nuclear speck|spliceosomal complex	nucleotide binding|protein binding|RNA binding				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CTTCGCAAGAGGGAGCAGAAG	0.577													14	17					0	0	0.00185496	0	0
MXRA5	25878	broad.mit.edu	37	X	3235265	3235265	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chrX:3235265G>A	uc004crg.3	-	6	6614	c.6457C>T	c.(6457-6459)CCG>TCG	p.P2153S		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2153	Ig-like C2-type 6.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GTCCTCCGCGGGGAGGTGCCC	0.697													7	0					0	0	0.00198382	0	0
PNPLA4	8228	broad.mit.edu	37	X	7868853	7868853	+	Silent	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chrX:7868853G>A	uc011mhq.1	-	7	798	c.636C>T	c.(634-636)TCC>TCT	p.S212S	PNPLA4_uc011mhr.1_Silent_p.S212S|PNPLA4_uc011mhs.1_Silent_p.S125S	NM_004650	NP_004641	P41247	PLPL4_HUMAN	patatin-like phospholipase domain containing 4	212					lipid catabolic process		triglyceride lipase activity				0		Colorectal(8;0.0329)|Medulloblastoma(8;0.232)				GGTTTGCCAGGGACAACTAGA	0.358													6	2					0	0	0.000157383	0	0
DDX3X	1654	broad.mit.edu	37	X	41202597	41202598	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chrX:41202597_41202598CC>TT	uc004dfe.2	+	7	1527_1528	c.672_673CC>TT	c.(670-675)GCCCAA>GCTTAA	p.Q225*	DDX3X_uc010nhf.1_Nonsense_Mutation_p.Q209*|DDX3X_uc004dff.2_Nonsense_Mutation_p.Q225*|DDX3X_uc011mkq.1_Nonsense_Mutation_p.Q209*|DDX3X_uc011mkr.1_Nonsense_Mutation_p.Q225*|DDX3X_uc011mks.1_Intron|DDX3X_uc004dfg.2_RNA|DDX3X_uc011mkt.1_RNA	NM_001356	NP_001347	O00571	DDX3X_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3	225	Helicase ATP-binding.|ATP.				interspecies interaction between organisms	cytoplasm|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding|RNA binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6						TGGCTTGTGCCCAAACAGGTAA	0.272										HNSCC(61;0.18)			13	1					0	0	6.4e-05	0	0
TSIX	9383	broad.mit.edu	37	X	73046495	73046495	+	RNA	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chrX:73046495C>T	uc004ebn.2	+	1		c.34456C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						CTTGGGATTTCCCCAGGTCTT	0.443													31	4					0	0	0.00209593	0	0
ZCCHC5	203430	broad.mit.edu	37	X	77912605	77912605	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chrX:77912605C>T	uc004edc.1	-	2	1609	c.1313G>A	c.(1312-1314)CGT>CAT	p.R438H		NM_152694	NP_689907	Q8N8U3	ZCHC5_HUMAN	zinc finger, CCHC domain containing 5	438							nucleic acid binding|zinc ion binding			ovary(1)	1						TTTGTGCCAACGGACCCATTC	0.547													11	1					0	0	0.00136819	0	0
ZCCHC18	644353	broad.mit.edu	37	X	103358981	103358982	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chrX:103358981_103358982CC>TT	uc011msh.1	+	3	1495_1496	c.179_180CC>TT	c.(178-180)ACC>ATT	p.T60I	MCART6_uc004elu.2_Intron|ZCCHC18_uc011msg.1_Intron	NM_001143978	NP_001137450	P0CG32	ZCC18_HUMAN	zinc finger, CCHC domain containing 18	60							nucleic acid binding|zinc ion binding				0						GGGAAAGAAACCTTTGAAAACT	0.49													5	0					0	0	6.4e-05	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	105011256	105011256	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chrX:105011256G>A	uc004elz.1	+	11	2419	c.1663G>A	c.(1663-1665)GAA>AAA	p.E555K		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	555	Cytoplasmic (Potential).|TIR.				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						CTTAGTATATGAAATGCCCAT	0.423													32	5					0	0	0.00178596	0	0
COL4A6	1288	broad.mit.edu	37	X	107408127	107408128	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chrX:107408127_107408128GG>AT	uc004enw.3	-	39	4055_4056	c.3952_3953CC>AT	c.(3952-3954)CCT>ATT	p.P1318I	COL4A6_uc004env.3_Missense_Mutation_p.P1317I|COL4A6_uc011msn.1_Missense_Mutation_p.P1293I|COL4A6_uc010npk.2_Missense_Mutation_p.P1293I|COL4A6_uc010npj.2_5'Flank	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	1318	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						TAGCTCTCCAGGGAGGCCAGAA	0.599									Alport_syndrome_with_Diffuse_Leiomyomatosis				14	4					0	0	6.4e-05	0	0
MAGEA3	4102	broad.mit.edu	37	X	151935815	151935815	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chrX:151935815G>A	uc004fgp.2	-	3	561	c.352C>T	c.(352-354)CAT>TAT	p.H118Y		NM_005362	NP_005353	P43357	MAGA3_HUMAN	melanoma antigen family A, 3	118	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					AGCAGAAAATGAACCAACTCG	0.537													47	9					0	0	0.000781405	0	0
F8	2157	broad.mit.edu	37	X	154158047	154158047	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chrX:154158047G>A	uc004fmt.2	-	14	4189	c.4018C>T	c.(4018-4020)CCA>TCA	p.P1340S		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1340	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	TCTTCTAGTGGGAGTCTGAAT	0.418													21	1					0	0	0.00229938	0	0
MMP12	4321	broad.mit.edu	37	11	102738795	102738796	+	Frame_Shift_Ins	INS	-	T	T	rs68192524		TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:102738795_102738796insT	uc001phk.2	-	5	674_675	c.629_630insA	c.(628-630)ACCfs	p.T210fs		NM_002426	NP_002417	P39900	MMP12_HUMAN	matrix metalloproteinase 12 preproprotein	210					positive regulation of epithelial cell proliferation involved in wound healing|proteolysis|wound healing, spreading of epidermal cells	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.014)	Acetohydroxamic Acid(DB00551)	AGGAACAAGTGGTGCCTAAGAA	0.416													3	6	---	---	---	---					
ATM	472	broad.mit.edu	37	11	108106555	108106556	+	Frame_Shift_Ins	INS	-	GGTTA	GGTTA			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr11:108106555_108106556insGGTTA	uc001pkb.1	+	5	875_876	c.490_491insGGTTA	c.(490-492)TGGfs	p.W164fs	ATM_uc009yxr.1_Frame_Shift_Ins_p.W164fs	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	164					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		TCAGCAACAGTGGTTAGGTATG	0.371			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			14	57	---	---	---	---					
BRD7	29117	broad.mit.edu	37	16	50357594	50357595	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr16:50357594_50357595insA	uc002egf.1	-	13	1413_1414	c.1346_1347insT	c.(1345-1347)TTGfs	p.L449fs	BRD7_uc002ege.1_Frame_Shift_Ins_p.L449fs	NM_013263	NP_037395	Q9NPI1	BRD7_HUMAN	bromodomain containing 7	449					cell cycle|negative regulation of cell proliferation|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of histone acetylation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|nucleus	histone acetyl-lysine binding|p53 binding|transcription coactivator activity|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding				0		all_cancers(37;0.0127)				GGCACGTGGCCAAAAACTCATG	0.446													17	22	---	---	---	---					
DDX49	54555	broad.mit.edu	37	19	19039092	19039093	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr19:19039092_19039093delCT	uc002nkq.1	+	13	1476_1477	c.1419_1420delCT	c.(1417-1422)CACTCAfs	p.H473fs	HOMER3_uc002nko.1_Intron|HOMER3_uc002nkp.1_Intron|DDX49_uc002nkr.1_RNA|DDX49_uc002nks.1_Frame_Shift_Del_p.H366fs	NM_019070	NP_061943	Q9Y6V7	DDX49_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	473_474							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1			Epithelial(12;0.0289)			CTGGGTCCCACTCAGGCCCAGT	0.658													2	4	---	---	---	---					
ALMS1	7840	broad.mit.edu	37	2	73613180	73613181	+	Frame_Shift_Del	DEL	CC	-	-			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr2:73613180_73613181delCC	uc002sje.1	+	2	298_299	c.187_188delCC	c.(187-189)CCCfs	p.P63fs	ALMS1_uc002sjf.1_Frame_Shift_Del_p.P62fs	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	62	Glu-rich.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						TCACTACGGGCCCCAGCATCTG	0.673													2	4	---	---	---	---					
ZNF197	10168	broad.mit.edu	37	3	44685004	44685005	+	Frame_Shift_Del	DEL	GT	-	-			TCGA-EE-A2GN-06A-11D-A196-08	TCGA-EE-A2GN-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	10bb1a92-901e-4a14-80f4-5e88f997754b	65d9054f-653a-4a10-9e25-1fe617481aa2	g.chr3:44685004_44685005delGT	uc003cnm.2	+	6	2588_2589	c.2382_2383delGT	c.(2380-2385)GAGTGTfs	p.E794fs	ZNF197_uc003cnn.2_Intron|ZNF197_uc003cno.2_Intron|ZNF197_uc003cnp.2_Intron	NM_006991	NP_008922	O14709	ZN197_HUMAN	zinc finger protein 197 isoform 1	794_795	C2H2-type 16.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|skin(1)	4				KIRC - Kidney renal clear cell carcinoma(197;0.0478)|Kidney(197;0.0598)		AGTGTGATGAGTGTGGCAAATG	0.421													21	58	---	---	---	---					
